Query 028651
Match_columns 206
No_of_seqs 283 out of 1872
Neff 8.5
Searched_HMMs 29240
Date Tue Mar 26 00:59:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f3j_A RNA and export factor b 100.0 8.5E-34 2.9E-38 219.8 14.8 154 1-178 15-168 (177)
2 3ulh_A THO complex subunit 4; 99.9 5.9E-23 2E-27 145.6 12.5 102 72-175 5-106 (107)
3 4fxv_A ELAV-like protein 1; RN 99.9 6.4E-23 2.2E-27 144.0 12.1 80 97-176 18-98 (99)
4 3s8s_A Histone-lysine N-methyl 99.9 1.3E-21 4.6E-26 139.9 12.6 82 96-177 4-86 (110)
5 2kt5_A RNA and export factor-b 99.9 2.8E-21 9.7E-26 140.6 12.6 105 74-180 13-117 (124)
6 2fy1_A RNA-binding motif prote 99.9 4.3E-21 1.5E-25 138.4 13.0 84 96-179 5-88 (116)
7 2cpz_A CUG triplet repeat RNA- 99.9 5.6E-21 1.9E-25 137.2 13.6 84 97-180 24-108 (115)
8 3bs9_A Nucleolysin TIA-1 isofo 99.9 3.5E-21 1.2E-25 131.2 11.9 82 96-177 4-86 (87)
9 2dnz_A Probable RNA-binding pr 99.9 4.6E-21 1.6E-25 132.8 12.5 84 96-179 3-87 (95)
10 3ex7_B RNA-binding protein 8A; 99.9 1.3E-21 4.5E-26 142.6 10.1 88 93-180 17-105 (126)
11 2do4_A Squamous cell carcinoma 99.9 9.5E-21 3.2E-25 132.6 12.8 84 96-179 15-98 (100)
12 2dnm_A SRP46 splicing factor; 99.9 2.9E-21 9.8E-26 136.0 10.2 86 94-179 9-95 (103)
13 2dgs_A DAZ-associated protein 99.9 8.8E-21 3E-25 132.6 12.5 86 95-181 7-93 (99)
14 4f25_A Polyadenylate-binding p 99.9 4.5E-21 1.5E-25 138.0 11.3 81 97-178 4-84 (115)
15 2dgo_A Cytotoxic granule-assoc 99.9 2.5E-20 8.4E-25 133.7 15.1 86 96-181 13-99 (115)
16 2jrs_A RNA-binding protein 39; 99.9 2.8E-21 9.7E-26 137.6 10.0 88 91-178 19-107 (108)
17 1whw_A Hypothetical protein ri 99.9 9.8E-21 3.3E-25 132.2 12.6 84 96-179 6-90 (99)
18 2do0_A HnRNP M, heterogeneous 99.9 3E-20 1E-24 133.0 15.0 83 96-178 13-95 (114)
19 2lxi_A RNA-binding protein 10; 99.9 1.2E-21 4E-26 135.4 7.2 82 98-179 1-85 (91)
20 2cq0_A Eukaryotic translation 99.9 8.5E-21 2.9E-25 133.6 11.8 84 96-179 13-97 (103)
21 1x5s_A Cold-inducible RNA-bind 99.9 7.8E-21 2.7E-25 133.5 11.5 85 95-179 9-94 (102)
22 1x5u_A Splicing factor 3B subu 99.8 7.5E-21 2.6E-25 134.2 11.4 84 96-179 13-97 (105)
23 2lkz_A RNA-binding protein 5; 99.8 1.8E-21 6.3E-26 135.6 8.0 82 95-176 6-94 (95)
24 2cqb_A Peptidyl-prolyl CIS-tra 99.8 6.2E-21 2.1E-25 134.0 10.8 85 96-180 10-95 (102)
25 3md1_A Nuclear and cytoplasmic 99.8 1.2E-20 4.2E-25 127.4 11.9 81 98-178 1-82 (83)
26 1h2v_Z 20 kDa nuclear CAP bind 99.8 2E-20 6.8E-25 141.3 13.8 88 94-181 35-123 (156)
27 2cqc_A Arginine/serine-rich sp 99.8 1.3E-20 4.3E-25 130.5 11.6 81 96-176 13-94 (95)
28 2dnh_A Bruno-like 5, RNA bindi 99.8 2.1E-20 7.2E-25 131.9 12.9 84 96-179 13-99 (105)
29 2cqd_A RNA-binding region cont 99.8 2.4E-20 8.3E-25 134.0 13.3 82 96-178 15-97 (116)
30 1x4h_A RNA-binding protein 28; 99.8 1.6E-20 5.6E-25 133.7 12.2 86 95-180 12-104 (111)
31 2d9p_A Polyadenylate-binding p 99.8 1.5E-20 5E-25 132.4 11.7 84 96-180 13-96 (103)
32 1x5t_A Splicing factor 3B subu 99.8 9.6E-21 3.3E-25 131.5 10.5 84 96-179 3-88 (96)
33 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1E-20 3.5E-25 128.4 10.3 80 96-175 5-85 (85)
34 2cq3_A RNA-binding protein 9; 99.8 4.5E-20 1.6E-24 129.8 14.0 85 96-181 13-97 (103)
35 2e5h_A Zinc finger CCHC-type a 99.8 1.2E-20 4.2E-25 130.4 10.8 80 96-175 14-94 (94)
36 1p27_B RNA-binding protein 8A; 99.8 1.4E-20 4.7E-25 133.1 11.3 84 95-178 20-104 (106)
37 2x1f_A MRNA 3'-END-processing 99.8 1.7E-20 5.7E-25 130.5 11.3 83 97-179 1-84 (96)
38 2ywk_A Putative RNA-binding pr 99.8 1.4E-20 4.8E-25 130.4 10.9 81 96-176 14-94 (95)
39 2la6_A RNA-binding protein FUS 99.8 1.8E-20 6.2E-25 131.0 11.3 84 92-175 7-99 (99)
40 1u6f_A Tcubp1, RNA-binding pro 99.8 2.8E-20 9.6E-25 137.8 13.0 87 94-180 38-125 (139)
41 2dgv_A HnRNP M, heterogeneous 99.8 2.1E-20 7.1E-25 128.8 11.3 84 95-179 5-88 (92)
42 2dhg_A TRNA selenocysteine ass 99.8 1.7E-20 5.7E-25 132.2 11.0 84 96-179 7-92 (104)
43 3p5t_L Cleavage and polyadenyl 99.8 2.4E-21 8.1E-26 133.4 6.3 81 99-179 2-85 (90)
44 1wi8_A EIF-4B, eukaryotic tran 99.8 2E-20 6.7E-25 132.0 11.0 84 96-181 13-98 (104)
45 2cph_A RNA binding motif prote 99.8 3.2E-20 1.1E-24 131.3 11.9 84 96-179 13-99 (107)
46 2dgp_A Bruno-like 4, RNA bindi 99.8 2.1E-20 7.2E-25 132.1 10.8 85 95-179 10-98 (106)
47 1oo0_B CG8781-PA, drosophila Y 99.8 2.4E-20 8.1E-25 132.8 10.9 85 94-178 22-107 (110)
48 2div_A TRNA selenocysteine ass 99.8 2.8E-20 9.7E-25 129.9 10.8 83 96-178 7-95 (99)
49 2cpf_A RNA binding motif prote 99.8 3.4E-20 1.1E-24 129.3 11.0 84 96-179 3-90 (98)
50 2dng_A Eukaryotic translation 99.8 6.5E-20 2.2E-24 129.1 12.6 82 96-179 13-95 (103)
51 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.2E-19 4.2E-24 127.6 13.9 83 96-179 13-95 (103)
52 2cpe_A RNA-binding protein EWS 99.8 3.4E-20 1.2E-24 132.6 10.9 84 96-179 13-105 (113)
53 1x4c_A Splicing factor, argini 99.8 1.1E-19 3.7E-24 129.2 13.1 78 97-180 14-96 (108)
54 2dgx_A KIAA0430 protein; RRM d 99.8 6.4E-20 2.2E-24 127.7 11.7 81 96-178 7-91 (96)
55 2dgw_A Probable RNA-binding pr 99.8 1.1E-19 3.9E-24 124.9 12.6 81 96-178 8-88 (91)
56 4a8x_A RNA-binding protein wit 99.8 4.1E-20 1.4E-24 126.1 10.0 82 97-178 3-86 (88)
57 2cqg_A TDP-43, TAR DNA-binding 99.8 1.8E-19 6E-24 126.8 13.5 84 96-181 13-97 (103)
58 3ucg_A Polyadenylate-binding p 99.8 9.1E-20 3.1E-24 124.7 11.5 79 98-177 6-85 (89)
59 2kxn_B Transformer-2 protein h 99.8 3.2E-20 1.1E-24 136.3 9.6 83 96-178 44-127 (129)
60 3ns6_A Eukaryotic translation 99.8 1E-20 3.4E-25 132.9 6.6 81 97-177 5-93 (100)
61 2dh8_A DAZ-associated protein 99.8 4.2E-20 1.4E-24 130.4 9.9 85 96-181 14-99 (105)
62 1x4a_A Splicing factor, argini 99.8 1.8E-19 6.3E-24 128.0 13.1 82 96-179 20-101 (109)
63 2khc_A Testis-specific RNP-typ 99.8 4.3E-20 1.5E-24 133.0 9.6 80 96-175 38-118 (118)
64 2cqp_A RNA-binding protein 12; 99.8 3.2E-20 1.1E-24 129.4 8.5 83 96-178 13-96 (98)
65 3s7r_A Heterogeneous nuclear r 99.8 1.6E-19 5.5E-24 123.1 11.5 79 95-174 8-87 (87)
66 2dis_A Unnamed protein product 99.8 1.7E-19 5.7E-24 128.1 11.5 85 96-180 6-95 (109)
67 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.6E-19 5.6E-24 137.6 12.3 85 95-179 69-154 (165)
68 3n9u_C Cleavage and polyadenyl 99.8 1E-19 3.5E-24 137.8 11.0 82 97-178 54-138 (156)
69 2dgu_A Heterogeneous nuclear r 99.8 3.7E-19 1.3E-23 125.3 13.0 82 93-181 6-87 (103)
70 1sjq_A Polypyrimidine tract-bi 99.8 8.2E-20 2.8E-24 129.2 9.5 81 96-181 14-96 (105)
71 1s79_A Lupus LA protein; RRM, 99.8 7.2E-20 2.5E-24 129.3 8.9 79 97-176 10-88 (103)
72 2ek1_A RNA-binding protein 12; 99.8 3.4E-20 1.2E-24 128.4 7.0 80 97-176 14-94 (95)
73 2kn4_A Immunoglobulin G-bindin 99.8 2.3E-19 7.7E-24 135.6 12.0 84 96-179 68-152 (158)
74 1p1t_A Cleavage stimulation fa 99.8 2.9E-20 1E-24 130.8 6.6 83 97-179 7-90 (104)
75 2dnq_A RNA-binding protein 4B; 99.8 3.7E-19 1.2E-23 122.2 11.7 78 95-179 5-82 (90)
76 1x4e_A RNA binding motif, sing 99.8 1.9E-20 6.6E-25 127.2 5.1 80 96-175 3-83 (85)
77 2cpy_A RNA-binding protein 12; 99.8 2.9E-20 9.9E-25 133.5 6.2 82 96-178 13-95 (114)
78 2fc9_A NCL protein; structure 99.8 2.9E-19 9.8E-24 125.3 11.0 80 96-178 13-92 (101)
79 2rs2_A Musashi-1, RNA-binding 99.8 2.3E-19 8E-24 127.8 10.5 83 96-179 23-106 (109)
80 2cpi_A CCR4-NOT transcription 99.8 2.5E-19 8.7E-24 127.9 10.7 83 96-178 13-102 (111)
81 3r27_A HnRNP L, heterogeneous 99.8 2.9E-19 1E-23 125.2 10.7 79 95-178 18-98 (100)
82 2wbr_A GW182, gawky, LD47780P; 99.8 1.8E-19 6.2E-24 122.6 9.3 74 97-175 6-79 (89)
83 1x4b_A Heterogeneous nuclear r 99.8 2.4E-19 8.1E-24 128.8 10.5 81 98-179 27-108 (116)
84 1wez_A HnRNP H', FTP-3, hetero 99.8 1.2E-19 4.1E-24 127.9 8.7 81 96-178 13-93 (102)
85 2lea_A Serine/arginine-rich sp 99.8 5.4E-20 1.8E-24 136.1 7.1 83 97-179 46-129 (135)
86 2err_A Ataxin-2-binding protei 99.8 1.8E-19 6.1E-24 128.4 9.5 83 94-177 25-107 (109)
87 1wg5_A Heterogeneous nuclear r 99.8 2.9E-19 1E-23 126.1 10.4 82 96-178 13-95 (104)
88 1x5o_A RNA binding motif, sing 99.8 4E-19 1.4E-23 127.2 11.1 81 97-177 24-112 (114)
89 2nlw_A Eukaryotic translation 99.8 1.7E-19 5.9E-24 127.5 9.0 83 94-177 11-100 (105)
90 2db1_A Heterogeneous nuclear r 99.8 2E-19 6.7E-24 130.0 9.2 82 96-178 15-99 (118)
91 2cq1_A PTB-like protein L; RRM 99.8 7.8E-19 2.7E-23 123.6 11.8 80 96-180 13-94 (101)
92 3pgw_S U1-70K; protein-RNA com 99.8 6E-19 2.1E-23 153.8 13.7 89 96-184 100-189 (437)
93 2jwn_A Embryonic polyadenylate 99.8 5.3E-19 1.8E-23 128.4 11.2 80 98-178 36-116 (124)
94 2cq4_A RNA binding motif prote 99.8 1.7E-19 5.8E-24 129.2 8.5 80 98-178 25-105 (114)
95 1why_A Hypothetical protein ri 99.8 5.4E-19 1.8E-23 123.0 10.7 78 96-178 15-94 (97)
96 2j76_E EIF-4B, EIF4B, eukaryot 99.8 6.5E-20 2.2E-24 128.6 6.0 83 94-178 15-99 (100)
97 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 4.7E-19 1.6E-23 130.9 11.0 78 97-174 62-140 (140)
98 2fc8_A NCL protein; structure 99.8 6.4E-19 2.2E-23 123.6 11.1 81 96-179 13-94 (102)
99 2cpx_A Hypothetical protein FL 99.8 7.9E-20 2.7E-24 131.0 6.4 85 96-180 23-108 (115)
100 2m2b_A RNA-binding protein 10; 99.8 9.3E-20 3.2E-24 133.9 6.7 82 96-178 21-109 (131)
101 2mss_A Protein (musashi1); RNA 99.8 1.1E-19 3.8E-24 120.5 6.4 74 100-174 1-75 (75)
102 2a3j_A U1 small nuclear ribonu 99.8 6.8E-19 2.3E-23 128.9 11.2 84 93-178 24-111 (127)
103 2ki2_A SS-DNA binding protein 99.8 5.5E-20 1.9E-24 126.2 4.9 80 99-179 2-82 (90)
104 2jvr_A Nucleolar protein 3; RN 99.8 3.4E-19 1.2E-23 127.5 8.9 80 96-178 26-106 (111)
105 2hvz_A Splicing factor, argini 99.8 3.9E-19 1.3E-23 124.5 9.0 76 99-178 1-76 (101)
106 2hgl_A HNRPF protein, heteroge 99.8 2.8E-19 9.7E-24 132.4 8.6 80 97-177 43-125 (136)
107 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.3E-19 4.3E-24 120.7 6.0 75 99-174 1-76 (77)
108 3beg_B Splicing factor, argini 99.8 3.7E-19 1.3E-23 128.0 8.7 77 97-179 15-96 (115)
109 2dgt_A RNA-binding protein 30; 99.8 2E-18 6.8E-23 119.0 12.0 78 95-179 7-84 (92)
110 2ad9_A Polypyrimidine tract-bi 99.8 6.4E-19 2.2E-23 127.4 9.9 80 96-180 29-110 (119)
111 1wex_A Hypothetical protein (r 99.8 1.2E-18 4.1E-23 123.2 11.1 79 96-179 13-93 (104)
112 1x4g_A Nucleolysin TIAR; struc 99.8 1.3E-18 4.5E-23 123.6 11.4 79 96-179 23-101 (109)
113 2cqh_A IGF-II mRNA-binding pro 99.8 6.6E-19 2.3E-23 121.6 9.5 79 95-179 5-85 (93)
114 1wel_A RNA-binding protein 12; 99.8 2.1E-19 7.2E-24 130.8 7.4 81 97-178 24-105 (124)
115 1nu4_A U1A RNA binding domain; 99.8 2.6E-19 8.8E-24 124.4 7.5 83 95-179 5-91 (97)
116 2dnn_A RNA-binding protein 12; 99.8 4.1E-19 1.4E-23 126.7 8.4 77 98-176 16-92 (109)
117 1x4d_A Matrin 3; structural ge 99.8 5.6E-19 1.9E-23 124.5 8.6 78 96-178 13-93 (102)
118 2cpd_A Apobec-1 stimulating pr 99.8 4.1E-18 1.4E-22 118.9 13.0 78 95-179 12-91 (99)
119 3q2s_C Cleavage and polyadenyl 99.8 4.6E-19 1.6E-23 142.2 9.2 80 97-176 67-149 (229)
120 2e5j_A Methenyltetrahydrofolat 99.8 9.3E-19 3.2E-23 121.9 9.6 79 96-178 17-95 (97)
121 2ytc_A PRE-mRNA-splicing facto 99.8 1.3E-18 4.5E-23 117.9 10.1 75 96-175 10-85 (85)
122 2dnp_A RNA-binding protein 14; 99.8 2E-18 6.9E-23 118.5 11.1 77 96-179 7-83 (90)
123 2hgn_A Heterogeneous nuclear r 99.8 8.6E-20 3E-24 135.6 4.2 81 97-179 45-125 (139)
124 2xnq_A Nuclear polyadenylated 99.8 3.1E-18 1.1E-22 119.4 11.8 78 93-177 17-95 (97)
125 2cpj_A Non-POU domain-containi 99.8 1.4E-18 4.9E-23 121.3 10.0 79 96-179 13-91 (99)
126 2krb_A Eukaryotic translation 99.8 4.3E-19 1.5E-23 119.5 6.7 73 98-171 1-80 (81)
127 3lqv_A PRE-mRNA branch site pr 99.8 1.9E-18 6.5E-23 123.8 10.5 80 96-177 6-85 (115)
128 2la4_A Nuclear and cytoplasmic 99.8 1.1E-18 3.6E-23 122.3 8.9 76 96-176 25-100 (101)
129 2jvo_A Nucleolar protein 3; nu 99.8 1.6E-18 5.6E-23 123.2 10.0 78 95-179 28-105 (108)
130 1fj7_A Nucleolin RBD1, protein 99.8 1.1E-19 3.7E-24 127.4 3.3 82 96-179 15-97 (101)
131 2hgm_A HNRPF protein, heteroge 99.8 6.7E-19 2.3E-23 128.6 7.4 80 95-176 39-120 (126)
132 3egn_A RNA-binding protein 40; 99.8 1.5E-18 5.3E-23 129.1 9.5 88 93-180 40-133 (143)
133 4f02_A Polyadenylate-binding p 99.8 3.9E-18 1.3E-22 134.9 12.4 83 96-178 13-96 (213)
134 2kvi_A Nuclear polyadenylated 99.8 1.8E-18 6.3E-23 120.2 9.1 77 95-178 7-84 (96)
135 2lcw_A RNA-binding protein FUS 99.6 3.3E-20 1.1E-24 133.4 0.0 83 97-179 6-97 (116)
136 1fjc_A Nucleolin RBD2, protein 99.8 1.2E-18 4.1E-23 120.9 7.9 79 96-178 14-92 (96)
137 1wf1_A RNA-binding protein RAL 99.8 3.5E-18 1.2E-22 121.6 10.3 75 97-178 26-101 (110)
138 2lmi_A GRSF-1, G-rich sequence 99.8 3.8E-19 1.3E-23 126.2 5.2 82 95-177 8-92 (107)
139 1x4f_A Matrin 3; structural ge 99.8 1.9E-18 6.6E-23 123.6 8.1 79 96-179 23-104 (112)
140 1whx_A Hypothetical protein ri 99.8 3.3E-18 1.1E-22 122.2 9.3 76 98-178 10-85 (111)
141 2dha_A FLJ20171 protein; RRM d 99.8 1.3E-18 4.6E-23 126.6 7.3 80 97-177 22-105 (123)
142 2xs2_A Deleted in azoospermia- 99.8 1.5E-18 5E-23 121.8 7.3 80 97-178 8-87 (102)
143 2e5g_A U6 snRNA-specific termi 99.8 8.6E-18 3E-22 116.2 10.9 77 97-179 7-84 (94)
144 1iqt_A AUF1, heterogeneous nuc 99.8 5.4E-19 1.8E-23 117.1 4.5 74 100-174 1-75 (75)
145 1fxl_A Paraneoplastic encephal 99.8 1.1E-17 3.9E-22 125.9 12.4 81 98-178 2-83 (167)
146 1x5p_A Negative elongation fac 99.7 3.3E-17 1.1E-21 114.0 13.1 77 96-179 13-89 (97)
147 1wg1_A KIAA1579 protein, homol 99.7 5.4E-18 1.9E-22 115.9 8.9 76 97-178 4-79 (88)
148 3md3_A Nuclear and cytoplasmic 99.7 1.7E-17 6E-22 124.8 12.5 82 94-175 83-165 (166)
149 2e44_A Insulin-like growth fac 99.7 7E-18 2.4E-22 117.0 9.5 78 97-177 14-92 (96)
150 2i2y_A Fusion protein consists 99.7 5.8E-18 2E-22 126.9 9.5 79 95-177 70-148 (150)
151 2qfj_A FBP-interacting repress 99.7 1.6E-17 5.4E-22 130.6 12.3 83 97-179 124-207 (216)
152 1b7f_A Protein (SXL-lethal pro 99.7 1.1E-17 3.9E-22 126.3 10.2 82 97-178 2-84 (168)
153 2diu_A KIAA0430 protein; struc 99.7 1.9E-17 6.4E-22 113.8 9.6 76 97-181 7-88 (96)
154 3md3_A Nuclear and cytoplasmic 99.7 2.9E-17 9.9E-22 123.6 11.6 80 99-178 1-80 (166)
155 1sjr_A Polypyrimidine tract-bi 99.7 2.5E-17 8.4E-22 125.0 11.2 80 96-178 44-125 (164)
156 2j8a_A Histone-lysine N-methyl 99.7 1.4E-17 4.8E-22 120.8 8.8 78 99-176 3-95 (136)
157 3zzy_A Polypyrimidine tract-bi 99.7 3.9E-17 1.3E-21 119.5 11.0 78 97-178 27-107 (130)
158 2yh0_A Splicing factor U2AF 65 99.7 4.8E-17 1.6E-21 126.2 12.1 83 96-178 112-195 (198)
159 2g4b_A Splicing factor U2AF 65 99.7 4E-17 1.4E-21 123.9 11.4 80 96-175 92-172 (172)
160 1l3k_A Heterogeneous nuclear r 99.7 3.8E-17 1.3E-21 126.5 11.4 83 95-178 10-93 (196)
161 1l3k_A Heterogeneous nuclear r 99.7 5.5E-17 1.9E-21 125.6 11.3 84 96-180 102-186 (196)
162 4f02_A Polyadenylate-binding p 99.7 5.1E-17 1.7E-21 128.5 11.1 81 97-178 102-182 (213)
163 2cq2_A Hypothetical protein LO 99.7 3.1E-17 1.1E-21 117.5 8.5 77 96-177 23-106 (114)
164 3tyt_A Heterogeneous nuclear r 99.7 6.4E-17 2.2E-21 127.6 10.8 78 97-178 3-81 (205)
165 2cjk_A Nuclear polyadenylated 99.7 2.6E-17 9E-22 124.3 8.1 79 98-177 87-166 (167)
166 2e5i_A Heterogeneous nuclear r 99.7 1.1E-16 3.7E-21 116.5 10.8 76 99-179 26-104 (124)
167 3nmr_A Cugbp ELAV-like family 99.7 1.3E-16 4.4E-21 121.1 11.2 79 97-175 94-175 (175)
168 1b7f_A Protein (SXL-lethal pro 99.7 1.7E-16 5.8E-21 119.8 11.8 79 96-174 87-168 (168)
169 2hzc_A Splicing factor U2AF 65 99.7 8.3E-17 2.8E-21 109.3 8.7 70 97-172 5-85 (87)
170 3d2w_A TAR DNA-binding protein 99.7 9.9E-17 3.4E-21 110.1 9.1 75 96-178 9-85 (89)
171 2dnl_A Cytoplasmic polyadenyla 99.7 9.2E-17 3.2E-21 115.1 9.2 77 96-175 6-86 (114)
172 2bz2_A Negative elongation fac 99.7 1.4E-16 4.6E-21 115.6 9.7 76 96-178 37-112 (121)
173 2qfj_A FBP-interacting repress 99.7 1.2E-16 4E-21 125.6 9.9 80 98-177 28-108 (216)
174 2pe8_A Splicing factor 45; RRM 99.7 5.2E-16 1.8E-20 109.8 12.2 80 97-176 7-93 (105)
175 2voo_A Lupus LA protein; RNA-b 99.7 2.3E-16 7.9E-21 123.3 11.0 79 98-177 109-187 (193)
176 1fxl_A Paraneoplastic encephal 99.7 2.8E-16 9.7E-21 118.2 11.2 78 97-174 87-167 (167)
177 1wf0_A TDP-43, TAR DNA-binding 99.7 5.5E-17 1.9E-21 110.7 6.3 77 97-179 4-80 (88)
178 3nmr_A Cugbp ELAV-like family 99.7 3.2E-16 1.1E-20 118.9 10.8 83 97-179 2-90 (175)
179 3pgw_A U1-A; protein-RNA compl 99.7 4.3E-16 1.5E-20 127.6 11.9 82 95-178 6-91 (282)
180 1fje_B Nucleolin RBD12, protei 99.7 2.5E-16 8.6E-21 120.0 9.6 77 97-177 98-174 (175)
181 3u1l_A PRE-mRNA-splicing facto 99.7 2.8E-16 9.6E-21 126.4 8.8 80 95-179 131-231 (240)
182 3smz_A Protein raver-1, ribonu 99.6 9.2E-16 3.1E-20 125.8 11.5 84 96-179 182-266 (284)
183 2ghp_A U4/U6 snRNA-associated 99.6 7.7E-16 2.6E-20 126.7 10.7 82 95-177 207-291 (292)
184 2adc_A Polypyrimidine tract-bi 99.6 4.6E-16 1.6E-20 124.2 8.8 78 96-177 32-110 (229)
185 2cjk_A Nuclear polyadenylated 99.6 3.7E-16 1.3E-20 117.9 7.6 79 97-177 2-81 (167)
186 2dit_A HIV TAT specific factor 99.6 4E-15 1.4E-19 106.2 12.4 80 97-179 14-104 (112)
187 3smz_A Protein raver-1, ribonu 99.6 4.5E-15 1.5E-19 121.6 14.1 82 97-178 94-176 (284)
188 3pgw_A U1-A; protein-RNA compl 99.6 2.6E-15 9E-20 122.9 11.6 77 95-175 204-281 (282)
189 3tyt_A Heterogeneous nuclear r 99.6 2.2E-15 7.4E-20 118.7 9.2 78 96-174 121-204 (205)
190 1jmt_A Splicing factor U2AF 35 99.6 8.1E-16 2.8E-20 108.6 5.2 73 103-175 20-104 (104)
191 2ghp_A U4/U6 snRNA-associated 99.6 6.6E-15 2.3E-19 121.1 11.3 83 97-179 116-199 (292)
192 1qm9_A Polypyrimidine tract-bi 99.6 1.4E-15 4.9E-20 118.2 6.7 77 98-178 3-80 (198)
193 1fje_B Nucleolin RBD12, protei 99.6 5.6E-16 1.9E-20 118.1 4.0 83 95-178 10-92 (175)
194 1qm9_A Polypyrimidine tract-bi 99.6 3.1E-15 1E-19 116.3 8.0 78 96-177 118-197 (198)
195 2adc_A Polypyrimidine tract-bi 99.6 5.8E-15 2E-19 117.8 9.7 78 96-177 149-228 (229)
196 3sde_A Paraspeckle component 1 99.6 6E-15 2.1E-19 120.0 9.7 77 95-176 19-95 (261)
197 3v4m_A Splicing factor U2AF 65 99.6 9.9E-15 3.4E-19 103.2 9.5 80 97-176 4-96 (105)
198 3sde_A Paraspeckle component 1 99.6 1.5E-14 5.2E-19 117.6 11.1 82 97-178 95-180 (261)
199 2yh0_A Splicing factor U2AF 65 99.6 4.8E-14 1.6E-18 109.1 12.4 76 97-178 3-89 (198)
200 2g4b_A Splicing factor U2AF 65 99.6 1.8E-14 6.2E-19 109.1 9.6 76 97-178 3-89 (172)
201 3ue2_A Poly(U)-binding-splicin 99.5 4.6E-14 1.6E-18 101.7 10.2 80 97-176 19-108 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.5E-13 5.1E-18 96.2 11.8 77 98-180 10-93 (100)
203 3tht_A Alkylated DNA repair pr 99.5 1.6E-13 5.3E-18 115.8 9.0 76 95-175 15-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 1.2E-12 4E-17 93.8 10.0 78 96-176 5-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 6E-12 2E-16 90.7 9.6 83 91-178 11-97 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 8.7E-12 3E-16 84.8 7.7 73 97-177 6-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 2.3E-10 7.9E-15 78.2 7.1 73 96-176 13-94 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 1.5E-09 5.2E-14 85.8 11.4 81 96-176 122-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.5 6.1E-07 2.1E-11 62.6 9.3 72 97-173 20-96 (117)
210 1wey_A Calcipressin 1; structu 98.2 6E-06 2E-10 57.2 6.8 75 97-176 4-83 (104)
211 2dhx_A Poly (ADP-ribose) polym 98.1 8E-05 2.7E-09 51.4 11.6 73 96-176 6-83 (104)
212 1uw4_A UPF3X; nonsense mediate 98.0 7.3E-05 2.5E-09 50.7 10.2 78 99-176 2-87 (91)
213 1wwh_A Nucleoporin 35, nucleop 97.8 5.8E-05 2E-09 53.6 6.5 73 96-175 22-95 (119)
214 1whv_A Poly(A)-specific ribonu 97.5 0.00057 1.9E-08 46.6 7.7 54 98-159 16-69 (100)
215 2l08_A Regulator of nonsense t 97.3 0.00048 1.6E-08 47.1 5.4 78 98-175 9-94 (97)
216 3ctr_A Poly(A)-specific ribonu 97.2 0.00044 1.5E-08 47.3 5.0 54 99-160 7-60 (101)
217 2kn4_A Immunoglobulin G-bindin 96.8 0.0014 4.9E-08 48.2 4.5 34 128-162 3-36 (158)
218 3p3d_A Nucleoporin 53; structu 96.6 0.0051 1.7E-07 44.2 6.3 77 98-176 7-98 (132)
219 3pq1_A Poly(A) RNA polymerase; 96.4 0.002 6.9E-08 56.0 3.8 56 98-158 53-108 (464)
220 2i2y_A Fusion protein consists 96.1 0.0041 1.4E-07 45.4 3.6 40 136-176 10-50 (150)
221 3d45_A Poly(A)-specific ribonu 91.2 0.62 2.1E-05 40.9 7.7 55 98-160 440-494 (507)
222 1b34_A Protein (small nuclear 90.3 0.071 2.4E-06 37.6 0.7 8 8-15 75-82 (119)
223 2g0c_A ATP-dependent RNA helic 82.1 3.1 0.00011 26.1 5.2 68 100-175 2-75 (76)
224 4e8u_A Putative uncharacterize 72.6 19 0.00064 26.8 7.6 57 99-157 13-81 (172)
225 4eyt_A Telomerase associated p 68.2 23 0.00079 23.4 7.9 57 96-159 10-66 (129)
226 3fry_A Probable copper-exporti 58.6 27 0.00092 20.9 6.6 55 99-159 7-61 (73)
227 3lpe_A Putative transcription 37.2 84 0.0029 20.3 5.4 34 125-162 40-73 (92)
228 4a4j_A Pacszia, cation-transpo 37.0 60 0.0021 18.7 4.6 55 99-158 4-61 (69)
229 2v94_A RPS24, 30S ribosomal pr 36.0 70 0.0024 21.7 4.9 47 108-155 37-89 (107)
230 3dxs_X Copper-transporting ATP 34.6 70 0.0024 18.7 6.6 56 99-159 4-63 (74)
231 1xn9_A 30S ribosomal protein S 34.1 57 0.002 21.9 4.2 47 108-155 28-80 (101)
232 1ywx_A 30S ribosomal protein S 33.7 67 0.0023 21.6 4.5 46 108-154 28-79 (102)
233 3h7h_B Transcription elongatio 31.3 97 0.0033 20.8 5.0 36 124-163 40-75 (106)
234 3pgw_S U1-70K; protein-RNA com 29.7 4 0.00014 35.0 -2.8 14 115-128 9-22 (437)
235 3fut_A Dimethyladenosine trans 29.6 65 0.0022 25.4 4.6 29 99-128 111-139 (271)
236 3ts2_A Protein LIN-28 homolog 27.6 8.2 0.00028 27.9 -1.0 28 113-147 2-29 (148)
237 3uzu_A Ribosomal RNA small sub 25.8 41 0.0014 26.7 2.7 31 99-129 115-145 (279)
238 2cu1_A Mitogen-activated prote 25.4 1.6E+02 0.0053 19.8 5.6 67 104-178 22-89 (103)
239 2xzm_P RPS24E; ribosome, trans 24.3 1.1E+02 0.0038 22.0 4.5 47 108-155 31-83 (149)
240 1qyr_A KSGA, high level kasuga 23.8 81 0.0028 24.4 4.1 24 99-122 91-114 (252)
241 2i3t_B Spindle assembly checkp 23.7 32 0.0011 20.2 1.2 12 3-14 23-34 (54)
242 2g1d_A 30S ribosomal protein S 22.1 59 0.002 21.7 2.5 46 108-154 29-80 (98)
243 3ced_A Methionine import ATP-b 22.1 1.7E+02 0.0058 19.0 5.9 62 99-160 21-86 (98)
244 2i9x_A Putative septation prot 22.0 1.2E+02 0.0042 19.6 4.0 25 124-148 5-30 (87)
245 4bby_A Alkyldihydroxyacetoneph 22.0 51 0.0018 29.6 2.9 54 106-159 351-408 (658)
246 2gpv_G Nuclear receptor corepr 21.9 41 0.0014 16.3 1.2 9 6-14 2-10 (26)
247 2g9o_A Copper-transporting ATP 21.5 1.5E+02 0.0052 18.2 5.1 56 99-159 5-64 (90)
248 1aw0_A Menkes copper-transport 21.2 1.2E+02 0.0042 17.0 4.2 56 99-159 5-64 (72)
249 3tqs_A Ribosomal RNA small sub 20.9 43 0.0015 26.1 1.9 29 100-128 98-126 (255)
250 3u5c_Y RP50, 40S ribosomal pro 20.5 2.3E+02 0.0079 20.0 6.5 46 108-154 33-84 (135)
251 1yg0_A COP associated protein; 20.4 1.2E+02 0.0041 16.6 5.8 55 100-159 4-61 (66)
No 1
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=100.00 E-value=8.5e-34 Score=219.83 Aligned_cols=154 Identities=44% Similarity=0.754 Sum_probs=117.5
Q ss_pred CCCCCCCCHHHHHhhcCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhccccCCCCCCCc
Q 028651 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRGPLSNARPSSYTIAKSFRRTRNFPWQH 80 (206)
Q Consensus 1 m~~~~~~sld~ii~~~~~~~r~~~~~~~~r~~~r~~g~g~~~~~~~g~g~~r~~~~~~~r~~~~~~~~~~~r~~~~~w~~ 80 (206)
||++|||||||||+++++..|+ + |++++.++ ..++.+.+..|+++|... +.....|+|
T Consensus 15 m~~~ld~sLDdii~~~r~~~r~-~-----r~~~~r~~------------~~~~~~~g~~r~~~y~~~----~~~~~~w~~ 72 (177)
T 2f3j_A 15 MADKMDMSLDDIIKLNRNQRRV-N-----RGGGPRRN------------RPAIARGGRNRPAPYSRP----KPLPDKWQH 72 (177)
T ss_dssp CCCSSSCCHHHHHHHHHTCCSC-S-----SSCCSSSS------------SCCCTTTSSTTTCCSSSC----CCCTTCSSC
T ss_pred hhhhhccCHHHHHhhcccCCCC-C-----CCCCCCCC------------CCCCCCCCcCCCCCCCCC----cCccccccc
Confidence 8999999999999965443211 1 11100000 001111123445555522 256778999
Q ss_pred hhhhhhhhhcCCCCCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhC
Q 028651 81 DLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (206)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~ 160 (206)
+.|++.. .......++++|||+|||+.+++++|+++|+.||.|..|.|+.++++.++|||||+|.+.++|++|++.||
T Consensus 73 d~~~~~~--~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~ln 150 (177)
T 2f3j_A 73 DLFDSGC--GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK 150 (177)
T ss_dssp SSSCSSC--CCCSSCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHST
T ss_pred ccccccc--CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhC
Confidence 9988765 23345567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeCCeeEEEEEecCCC
Q 028651 161 NVLLDGKPMKIEVVGTNA 178 (206)
Q Consensus 161 g~~i~g~~i~V~~a~~~~ 178 (206)
+..|+|+.|+|+|+....
T Consensus 151 g~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 151 GVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp TCBCSSSBCEEEEESSGG
T ss_pred CCEECCEEEEEEEecCCC
Confidence 999999999999998654
No 2
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.90 E-value=5.9e-23 Score=145.61 Aligned_cols=102 Identities=49% Similarity=0.882 Sum_probs=79.4
Q ss_pred cCCCCCCCchhhhhhhhhcCCCCCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHH
Q 028651 72 RTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSD 151 (206)
Q Consensus 72 r~~~~~w~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~ 151 (206)
+..+..|.|+.+..... ......+.++|||+|||+.+++++|+++|+.||.|..|.|+.++++.++|||||+|.+.++
T Consensus 5 r~~~~~~~~~~~~~~~~--~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 82 (107)
T 3ulh_A 5 KQLPDKWQHDLFDSGFG--GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKAD 82 (107)
T ss_dssp ---------------------CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHH
T ss_pred cCCCcccccccccCCCC--CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHH
Confidence 44667799988876553 3445567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEEec
Q 028651 152 AFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 152 A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
|++|++.||+..|+|+.|+|+++.
T Consensus 83 a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 83 ALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHhCCCEeCCcEEEEEEeC
Confidence 999999999999999999999986
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=6.4e-23 Score=144.05 Aligned_cols=80 Identities=34% Similarity=0.474 Sum_probs=77.4
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
.+++|||+|||+++|+++|+++|+.||.|..|.++.++ +|.++|||||+|.+.++|++|++.||+..|+|+.|+|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 57899999999999999999999999999999999998 89999999999999999999999999999999999999997
Q ss_pred C
Q 028651 176 T 176 (206)
Q Consensus 176 ~ 176 (206)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=139.86 Aligned_cols=82 Identities=13% Similarity=0.187 Sum_probs=78.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 357899999999999999999999999999999999998 7999999999999999999999999999999999999999
Q ss_pred cCC
Q 028651 175 GTN 177 (206)
Q Consensus 175 ~~~ 177 (206)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 754
No 5
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.86 E-value=2.8e-21 Score=140.61 Aligned_cols=105 Identities=47% Similarity=0.855 Sum_probs=92.0
Q ss_pred CCCCCCchhhhhhhhhcCCCCCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHH
Q 028651 74 RNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAF 153 (206)
Q Consensus 74 ~~~~w~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~ 153 (206)
....|.++.+.+.. .........++|||+|||+++++++|+++|+.||.|..|.|..++++.++|||||+|.+.++|+
T Consensus 13 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~ 90 (124)
T 2kt5_A 13 DPDKWQHDLFDSGC--GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADAL 90 (124)
T ss_dssp CCCCCCCCCCCCCC--CCCCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHH
T ss_pred CCccccccccccCC--CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHH
Confidence 34568887766544 2334556789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEEecCCCCC
Q 028651 154 AALKRYNNVLLDGKPMKIEVVGTNAEI 180 (206)
Q Consensus 154 ~Ai~~l~g~~i~g~~i~V~~a~~~~~~ 180 (206)
+|++.||+..|+|+.|+|+++.+....
T Consensus 91 ~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 117 (124)
T 2kt5_A 91 KAMKQYKGVPLDGRPMDIQLVASQIDL 117 (124)
T ss_dssp HHHHHHTTEESSSCEEEEEEECCTTCC
T ss_pred HHHHHcCCCEECCcEEEEEEeCCCCCC
Confidence 999999999999999999999876543
No 6
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=4.3e-21 Score=138.37 Aligned_cols=84 Identities=21% Similarity=0.341 Sum_probs=79.9
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
...++|||+|||+++++++|+++|+.||.|..|.|..++++.++|||||+|.+.++|++|++.||+..|+|+.|+|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 028651 176 TNAE 179 (206)
Q Consensus 176 ~~~~ 179 (206)
+...
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7654
No 7
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=5.6e-21 Score=137.17 Aligned_cols=84 Identities=19% Similarity=0.318 Sum_probs=79.8
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|++++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 56899999999999999999999999999999999998 89999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 028651 176 TNAEI 180 (206)
Q Consensus 176 ~~~~~ 180 (206)
++...
T Consensus 104 ~~~~~ 108 (115)
T 2cpz_A 104 SKNDS 108 (115)
T ss_dssp CSCCC
T ss_pred CCCcC
Confidence 76643
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=3.5e-21 Score=131.22 Aligned_cols=82 Identities=20% Similarity=0.345 Sum_probs=76.2
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++.||+..++|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 357899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCC
Q 028651 175 GTN 177 (206)
Q Consensus 175 ~~~ 177 (206)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 865
No 9
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.6e-21 Score=132.84 Aligned_cols=84 Identities=27% Similarity=0.479 Sum_probs=79.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.++++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 467999999999999999999999999999999999998 7999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 028651 175 GTNAE 179 (206)
Q Consensus 175 ~~~~~ 179 (206)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 10
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=1.3e-21 Score=142.62 Aligned_cols=88 Identities=27% Similarity=0.410 Sum_probs=81.4
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEE
Q 028651 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (206)
Q Consensus 93 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 171 (206)
....+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 344567899999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EEecCCCCC
Q 028651 172 EVVGTNAEI 180 (206)
Q Consensus 172 ~~a~~~~~~ 180 (206)
+++.+....
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999876543
No 11
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=9.5e-21 Score=132.62 Aligned_cols=84 Identities=21% Similarity=0.386 Sum_probs=79.5
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.++.++++.++|||||+|.+.++|++|++.||+..|+|+.|+|+++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 028651 176 TNAE 179 (206)
Q Consensus 176 ~~~~ 179 (206)
++..
T Consensus 95 ~~~~ 98 (100)
T 2do4_A 95 SGPS 98 (100)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7653
No 12
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=136.00 Aligned_cols=86 Identities=24% Similarity=0.336 Sum_probs=80.4
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEE
Q 028651 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (206)
Q Consensus 94 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 172 (206)
...+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 33467999999999999999999999999999999999998 79999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 028651 173 VVGTNAE 179 (206)
Q Consensus 173 ~a~~~~~ 179 (206)
++++...
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9987654
No 13
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=8.8e-21 Score=132.55 Aligned_cols=86 Identities=15% Similarity=0.294 Sum_probs=79.8
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
..+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++ ||+..|+|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3467999999999999999999999999999999999998 89999999999999999999998 899999999999999
Q ss_pred ecCCCCCC
Q 028651 174 VGTNAEIP 181 (206)
Q Consensus 174 a~~~~~~~ 181 (206)
+.++....
T Consensus 86 a~~~~~~~ 93 (99)
T 2dgs_A 86 AEPRDSKS 93 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCCcccC
Confidence 99766433
No 14
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=4.5e-21 Score=137.99 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=75.1
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
..++|||+|||+++++++|+++|+.||.|..|+|+.++. .++|||||+|.+.++|++||+.||+..|+|+.|.|.++.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 467899999999999999999999999999999999864 3789999999999999999999999999999999999986
Q ss_pred CC
Q 028651 177 NA 178 (206)
Q Consensus 177 ~~ 178 (206)
..
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 15
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=2.5e-20 Score=133.74 Aligned_cols=86 Identities=21% Similarity=0.398 Sum_probs=80.9
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 457899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 028651 175 GTNAEIP 181 (206)
Q Consensus 175 ~~~~~~~ 181 (206)
.+....+
T Consensus 93 ~~~~~~~ 99 (115)
T 2dgo_A 93 TRKPPAP 99 (115)
T ss_dssp SCCCCCS
T ss_pred cCCCCCC
Confidence 9876543
No 16
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=137.63 Aligned_cols=88 Identities=28% Similarity=0.464 Sum_probs=81.7
Q ss_pred CCCCCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeE
Q 028651 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169 (206)
Q Consensus 91 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i 169 (206)
.+....+.++|||+|||+.+++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455677999999999999999999999999999999999997 88999999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 028651 170 KIEVVGTNA 178 (206)
Q Consensus 170 ~V~~a~~~~ 178 (206)
+|++++++.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999998764
No 17
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=9.8e-21 Score=132.25 Aligned_cols=84 Identities=23% Similarity=0.358 Sum_probs=80.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 467899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 028651 175 GTNAE 179 (206)
Q Consensus 175 ~~~~~ 179 (206)
.++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 98654
No 18
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=3e-20 Score=133.02 Aligned_cols=83 Identities=28% Similarity=0.469 Sum_probs=78.7
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.|+.++++.++|||||+|.+.++|++|++.||+..|+|+.|+|+++.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
...
T Consensus 93 ~~~ 95 (114)
T 2do0_A 93 RAL 95 (114)
T ss_dssp CCC
T ss_pred cCC
Confidence 644
No 19
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=135.42 Aligned_cols=82 Identities=18% Similarity=0.273 Sum_probs=75.9
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccC-CeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhC-CceeCCeeEEEEEe
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYN-NVLLDGKPMKIEVV 174 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~-g~~i~g~~i~V~~a 174 (206)
+++|||+|||+++|+++|+++|+.|| .|.+|+|+.++ ++.++|||||+|.+.++|++|++.++ +..|+|+.|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 89999999998 89999999999999999999999874 56899999999999
Q ss_pred cCCCC
Q 028651 175 GTNAE 179 (206)
Q Consensus 175 ~~~~~ 179 (206)
.+++.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87653
No 20
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.5e-21 Score=133.57 Aligned_cols=84 Identities=25% Similarity=0.381 Sum_probs=79.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 357999999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 028651 175 GTNAE 179 (206)
Q Consensus 175 ~~~~~ 179 (206)
.++..
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87653
No 21
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.8e-21 Score=133.46 Aligned_cols=85 Identities=21% Similarity=0.399 Sum_probs=80.1
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
..+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467999999999999999999999999999999999987 889999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 028651 174 VGTNAE 179 (206)
Q Consensus 174 a~~~~~ 179 (206)
+.+...
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 997664
No 22
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.5e-21 Score=134.22 Aligned_cols=84 Identities=24% Similarity=0.371 Sum_probs=79.8
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 028651 175 GTNAE 179 (206)
Q Consensus 175 ~~~~~ 179 (206)
.+...
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 87654
No 23
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=1.8e-21 Score=135.59 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=75.8
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCC--eEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCc----eeCCe
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGE--LKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNV----LLDGK 167 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~--v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~----~i~g~ 167 (206)
...-.||||+|||+++|+++|+++|++||. |.+|+++.|+ ++.++|||||+|.+.++|++|++.||+. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345689999999999999999999999995 6789999998 8999999999999999999999999996 59999
Q ss_pred eEEEEEecC
Q 028651 168 PMKIEVVGT 176 (206)
Q Consensus 168 ~i~V~~a~~ 176 (206)
.|.|+||++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999975
No 24
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.2e-21 Score=133.96 Aligned_cols=85 Identities=22% Similarity=0.304 Sum_probs=80.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 467999999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 028651 175 GTNAEI 180 (206)
Q Consensus 175 ~~~~~~ 180 (206)
.+....
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 25
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=1.2e-20 Score=127.43 Aligned_cols=81 Identities=21% Similarity=0.392 Sum_probs=77.1
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
+++|||+|||+++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|++|++.||+..++|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999997 899999999999999999999999999999999999999987
Q ss_pred CC
Q 028651 177 NA 178 (206)
Q Consensus 177 ~~ 178 (206)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 26
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=2e-20 Score=141.31 Aligned_cols=88 Identities=30% Similarity=0.359 Sum_probs=81.7
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEE
Q 028651 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (206)
Q Consensus 94 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 172 (206)
...+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+|+.|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999998 78999999999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 028651 173 VVGTNAEIP 181 (206)
Q Consensus 173 ~a~~~~~~~ 181 (206)
|+++.....
T Consensus 115 ~a~~~~~~~ 123 (156)
T 1h2v_Z 115 WDAGFKEGR 123 (156)
T ss_dssp EESCCCTTC
T ss_pred ECCCCCCcC
Confidence 998765443
No 27
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=130.54 Aligned_cols=81 Identities=30% Similarity=0.392 Sum_probs=77.2
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 356899999999999999999999999999999999998 7899999999999999999999999999999999999998
Q ss_pred cC
Q 028651 175 GT 176 (206)
Q Consensus 175 ~~ 176 (206)
++
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 28
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=2.1e-20 Score=131.90 Aligned_cols=84 Identities=20% Similarity=0.332 Sum_probs=79.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC---eeEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG---KPMKIE 172 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g---~~i~V~ 172 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.|+.++++.++|||||+|.+.++|++|++.||+..+.+ +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred EecCCCC
Q 028651 173 VVGTNAE 179 (206)
Q Consensus 173 ~a~~~~~ 179 (206)
++.+...
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9998664
No 29
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=134.04 Aligned_cols=82 Identities=26% Similarity=0.390 Sum_probs=77.4
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++.|++ .|+|+.|+|+++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 357999999999999999999999999999999999998 899999999999999999999999998 899999999999
Q ss_pred cCCC
Q 028651 175 GTNA 178 (206)
Q Consensus 175 ~~~~ 178 (206)
....
T Consensus 94 ~~~~ 97 (116)
T 2cqd_A 94 YLGA 97 (116)
T ss_dssp TTTC
T ss_pred ccCC
Confidence 8654
No 30
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=133.68 Aligned_cols=86 Identities=20% Similarity=0.378 Sum_probs=80.4
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhC------CceeCCe
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYN------NVLLDGK 167 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~------g~~i~g~ 167 (206)
..+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++.|| +..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3467899999999999999999999999999999999998 78999999999999999999999999 9999999
Q ss_pred eEEEEEecCCCCC
Q 028651 168 PMKIEVVGTNAEI 180 (206)
Q Consensus 168 ~i~V~~a~~~~~~ 180 (206)
.|+|.++.++...
T Consensus 92 ~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 92 QLKVDLAVTRDEA 104 (111)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCccC
Confidence 9999999876543
No 31
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=132.36 Aligned_cols=84 Identities=24% Similarity=0.443 Sum_probs=79.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|++|++.||+..|+|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 35789999999999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 028651 176 TNAEI 180 (206)
Q Consensus 176 ~~~~~ 180 (206)
++...
T Consensus 92 ~~~~~ 96 (103)
T 2d9p_A 92 RKEER 96 (103)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 86643
No 32
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.6e-21 Score=131.47 Aligned_cols=84 Identities=20% Similarity=0.323 Sum_probs=79.2
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEE-EEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY-AIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v-~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
.+.++|||+|||+++++++|+++|+.||.|..| .|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357999999999999999999999999999999 999996 899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 028651 174 VGTNAE 179 (206)
Q Consensus 174 a~~~~~ 179 (206)
+.+...
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987653
No 33
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=1e-20 Score=128.38 Aligned_cols=80 Identities=24% Similarity=0.354 Sum_probs=76.2
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 467999999999999999999999999999999999986 8899999999999999999999999999999999999997
Q ss_pred c
Q 028651 175 G 175 (206)
Q Consensus 175 ~ 175 (206)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 34
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.5e-20 Score=129.81 Aligned_cols=85 Identities=20% Similarity=0.390 Sum_probs=78.5
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
...++|||+|||+++++++|+++|+.||.|..|.|+.+..+ ++|||||+|.+.++|++|++.||+..|+|+.|+|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 35799999999999999999999999999999999998754 89999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 028651 176 TNAEIP 181 (206)
Q Consensus 176 ~~~~~~ 181 (206)
+.....
T Consensus 92 ~~~~~~ 97 (103)
T 2cq3_A 92 ARVMTN 97 (103)
T ss_dssp SSCCCC
T ss_pred cCCCCC
Confidence 866433
No 35
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=130.42 Aligned_cols=80 Identities=28% Similarity=0.409 Sum_probs=76.2
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|+|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 356899999999999999999999999999999999998 7899999999999999999999999999999999999997
Q ss_pred c
Q 028651 175 G 175 (206)
Q Consensus 175 ~ 175 (206)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 36
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=133.09 Aligned_cols=84 Identities=29% Similarity=0.445 Sum_probs=79.2
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
..++++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3456899999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred ecCCC
Q 028651 174 VGTNA 178 (206)
Q Consensus 174 a~~~~ 178 (206)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98754
No 37
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=1.7e-20 Score=130.47 Aligned_cols=83 Identities=19% Similarity=0.313 Sum_probs=78.7
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
++++|||+|||+++++++|+++|+.||.|..|.+..++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999997 79999999999999999999999999999999999999998
Q ss_pred CCCC
Q 028651 176 TNAE 179 (206)
Q Consensus 176 ~~~~ 179 (206)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7653
No 38
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=130.38 Aligned_cols=81 Identities=25% Similarity=0.427 Sum_probs=77.2
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.|+.++++.++|||||+|.+.++|++|++.||+..|+|+.|+|++++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 35689999999999999999999999999999999999988999999999999999999999999999999999999986
Q ss_pred C
Q 028651 176 T 176 (206)
Q Consensus 176 ~ 176 (206)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 39
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=131.00 Aligned_cols=84 Identities=23% Similarity=0.419 Sum_probs=78.4
Q ss_pred CCCCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEE--------EEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCc
Q 028651 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR--------YAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNV 162 (206)
Q Consensus 92 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~ 162 (206)
+....+.++|||+|||+++++++|+++|+.||.|.. |.++.++ ++.++|||||+|.+.++|++|++.||+.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344456899999999999999999999999999999 9999997 8999999999999999999999999999
Q ss_pred eeCCeeEEEEEec
Q 028651 163 LLDGKPMKIEVVG 175 (206)
Q Consensus 163 ~i~g~~i~V~~a~ 175 (206)
.|+|+.|+|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999974
No 40
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=2.8e-20 Score=137.77 Aligned_cols=87 Identities=21% Similarity=0.287 Sum_probs=80.9
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEE
Q 028651 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (206)
Q Consensus 94 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 172 (206)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998 78999999999999999999999999999999999999
Q ss_pred EecCCCCC
Q 028651 173 VVGTNAEI 180 (206)
Q Consensus 173 ~a~~~~~~ 180 (206)
++.+....
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99986543
No 41
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=2.1e-20 Score=128.77 Aligned_cols=84 Identities=20% Similarity=0.318 Sum_probs=78.3
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
..+.++|||+|||+++++++|+++|+.||.|..|.+..+ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 346799999999999999999999999999999999884 7889999999999999999999999999999999999999
Q ss_pred cCCCC
Q 028651 175 GTNAE 179 (206)
Q Consensus 175 ~~~~~ 179 (206)
++...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87653
No 42
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=132.23 Aligned_cols=84 Identities=21% Similarity=0.343 Sum_probs=79.5
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhc-cCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCce-eCCeeEEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSE-IGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL-LDGKPMKIEV 173 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~-i~g~~i~V~~ 173 (206)
.+.++|||+|||+++++++|+++|+. ||.|..|.|+.++++.++|||||+|.+.++|++|++.||+.. |+|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 46799999999999999999999999 999999999999999999999999999999999999999999 9999999999
Q ss_pred ecCCCC
Q 028651 174 VGTNAE 179 (206)
Q Consensus 174 a~~~~~ 179 (206)
+.+...
T Consensus 87 a~~~~~ 92 (104)
T 2dhg_A 87 AIPKAS 92 (104)
T ss_dssp CCCCCS
T ss_pred ccCCCc
Confidence 987654
No 43
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=2.4e-21 Score=133.36 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=71.8
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccC--CeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
.+|||+|||+++++++|+++|+.|| .|..|.++.++ +|.++|||||+|.+.++|++|++.||+..|+|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999998 89999999999999999999999999999999999999998
Q ss_pred CCCC
Q 028651 176 TNAE 179 (206)
Q Consensus 176 ~~~~ 179 (206)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 44
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=131.99 Aligned_cols=84 Identities=19% Similarity=0.303 Sum_probs=78.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-C-CCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N-GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~-g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
.+.++|||+|||+++++++|+++|+.|| |..|.|+.++ + +.++|||||+|.+.++|++|+ .||+..|+|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 9999999998 5 899999999999999999999 9999999999999999
Q ss_pred ecCCCCCC
Q 028651 174 VGTNAEIP 181 (206)
Q Consensus 174 a~~~~~~~ 181 (206)
+.++....
T Consensus 91 a~~~~~~~ 98 (104)
T 1wi8_A 91 ADQAQDKD 98 (104)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 99866433
No 45
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.2e-20 Score=131.31 Aligned_cols=84 Identities=26% Similarity=0.378 Sum_probs=79.4
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEEC-C-CCCCceEEEEEEccHHHHHHHHHHh-CCceeCCeeEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-K-NGRPSGSAEVVYARRSDAFAALKRY-NNVLLDGKPMKIE 172 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~-~-~g~~~G~afV~f~~~~~A~~Ai~~l-~g~~i~g~~i~V~ 172 (206)
...++|||+|||+++++++|+++|+.||.|..|.|+.+ + ++.++|||||+|.+.++|++|++.| |+..|+|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 46799999999999999999999999999999999998 4 8999999999999999999999999 9999999999999
Q ss_pred EecCCCC
Q 028651 173 VVGTNAE 179 (206)
Q Consensus 173 ~a~~~~~ 179 (206)
++.++..
T Consensus 93 ~a~~~~~ 99 (107)
T 2cph_A 93 WADSEVT 99 (107)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9997654
No 46
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=2.1e-20 Score=132.11 Aligned_cols=85 Identities=19% Similarity=0.394 Sum_probs=79.3
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCcee---CCeeEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLL---DGKPMK 170 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i---~g~~i~ 170 (206)
..+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..+ .++.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 3467899999999999999999999999999999999998 799999999999999999999999999987 899999
Q ss_pred EEEecCCCC
Q 028651 171 IEVVGTNAE 179 (206)
Q Consensus 171 V~~a~~~~~ 179 (206)
|.++.+...
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987653
No 47
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=2.4e-20 Score=132.80 Aligned_cols=85 Identities=26% Similarity=0.431 Sum_probs=79.6
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEE
Q 028651 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (206)
Q Consensus 94 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 172 (206)
...+.++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 33467899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred EecCCC
Q 028651 173 VVGTNA 178 (206)
Q Consensus 173 ~a~~~~ 178 (206)
++.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 998754
No 48
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=129.88 Aligned_cols=83 Identities=23% Similarity=0.356 Sum_probs=78.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeE-EEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCee----E
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELK-RYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP----M 169 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~-~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~----i 169 (206)
.+.++|||+|||+++++++|+++|+.||.|. .|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4579999999999999999999999999999 99999998 8999999999999999999999999999999999 9
Q ss_pred EEEEecCCC
Q 028651 170 KIEVVGTNA 178 (206)
Q Consensus 170 ~V~~a~~~~ 178 (206)
+|.|+++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998654
No 49
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=129.26 Aligned_cols=84 Identities=25% Similarity=0.435 Sum_probs=77.5
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCC--C--CCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN--G--RPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~--g--~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 171 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.|+.++. | .++|||||+|.+.++|++|++.||+..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3578999999999999999999999999999999998763 3 78999999999999999999999999999999999
Q ss_pred EEecCCCC
Q 028651 172 EVVGTNAE 179 (206)
Q Consensus 172 ~~a~~~~~ 179 (206)
.++.+...
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987653
No 50
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=6.5e-20 Score=129.07 Aligned_cols=82 Identities=21% Similarity=0.370 Sum_probs=77.1
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|+.|| |..|.|+.++ ++.++|||||+|.+.++|++|+ .||+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4578999999999999999999999996 9999999998 7999999999999999999999 89999999999999999
Q ss_pred cCCCC
Q 028651 175 GTNAE 179 (206)
Q Consensus 175 ~~~~~ 179 (206)
.+...
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87553
No 51
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-19 Score=127.59 Aligned_cols=83 Identities=30% Similarity=0.308 Sum_probs=77.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
...++|||+|||+++++++|+++|+.||.|..|.|+.++.. ++|||||+|.+.++|++|++.||+..|.|+.|+|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 45799999999999999999999999999999999998743 68999999999999999999999999999999999998
Q ss_pred CCCC
Q 028651 176 TNAE 179 (206)
Q Consensus 176 ~~~~ 179 (206)
++..
T Consensus 92 ~~~~ 95 (103)
T 2cqi_A 92 TPSS 95 (103)
T ss_dssp CTTC
T ss_pred CCcc
Confidence 7553
No 52
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=132.59 Aligned_cols=84 Identities=29% Similarity=0.504 Sum_probs=79.1
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeE--------EEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCC
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELK--------RYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~--------~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g 166 (206)
.+.++|||+|||+++++++|+++|+.||.|. .|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4679999999999999999999999999999 69999996 89999999999999999999999999999999
Q ss_pred eeEEEEEecCCCC
Q 028651 167 KPMKIEVVGTNAE 179 (206)
Q Consensus 167 ~~i~V~~a~~~~~ 179 (206)
+.|+|.++.+...
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999987654
No 53
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-19 Score=129.21 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=73.1
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC-----eeEEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG-----KPMKI 171 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g-----~~i~V 171 (206)
..++|||+|||+++++++|+++|+.||.|..|.|+.+ |||||+|.+.++|++||+.||+..|+| +.|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 5789999999999999999999999999999999875 799999999999999999999999999 99999
Q ss_pred EEecCCCCC
Q 028651 172 EVVGTNAEI 180 (206)
Q Consensus 172 ~~a~~~~~~ 180 (206)
+++.+....
T Consensus 88 ~~a~~~~~~ 96 (108)
T 1x4c_A 88 KVDGPRSPS 96 (108)
T ss_dssp EESSCCSCC
T ss_pred EeCCCCCCC
Confidence 999986543
No 54
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.4e-20 Score=127.68 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=75.8
Q ss_pred CCCCEEEEeCCCCCCcHHHHH----HHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 171 (206)
...++|||+|||+++++++|+ ++|+.||.|..|.|+.++.+ +|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 457899999999999999999 99999999999999988854 889999999999999999999999999999999
Q ss_pred EEecCCC
Q 028651 172 EVVGTNA 178 (206)
Q Consensus 172 ~~a~~~~ 178 (206)
+++++..
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9998755
No 55
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=124.93 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=77.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
...++|||+|||+++++++|+++|+.| .|..|.|+.+.++.++|||||+|.+.++|++|++ ||+..|+|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 457899999999999999999999999 9999999999889999999999999999999999 99999999999999998
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
+..
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 754
No 56
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=4.1e-20 Score=126.08 Aligned_cols=82 Identities=27% Similarity=0.359 Sum_probs=76.1
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCC-CceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGR-PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~-~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
..++|||+|||+++++++|+++|+.||.|..|.++.+. ++. ++|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 46899999999999999999999999999999999887 444 8999999999999999999999999999999999999
Q ss_pred cCCC
Q 028651 175 GTNA 178 (206)
Q Consensus 175 ~~~~ 178 (206)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 57
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=126.77 Aligned_cols=84 Identities=19% Similarity=0.287 Sum_probs=77.8
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++. +..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEEec
Confidence 457899999999999999999999999999999999998 799999999999999999999984 78999999999999
Q ss_pred cCCCCCC
Q 028651 175 GTNAEIP 181 (206)
Q Consensus 175 ~~~~~~~ 181 (206)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cqg_A 91 NSKQSQD 97 (103)
T ss_dssp CTTCCCC
T ss_pred CCCCcCC
Confidence 9876544
No 58
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=9.1e-20 Score=124.69 Aligned_cols=79 Identities=27% Similarity=0.497 Sum_probs=75.9
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
.++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|+ .||+..|+|+.|+|+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4899999999999999999999999999999999998 8999999999999999999999 9999999999999999986
Q ss_pred C
Q 028651 177 N 177 (206)
Q Consensus 177 ~ 177 (206)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 59
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=3.2e-20 Score=136.28 Aligned_cols=83 Identities=30% Similarity=0.394 Sum_probs=78.7
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+|+.|+|+|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 457899999999999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred cCCC
Q 028651 175 GTNA 178 (206)
Q Consensus 175 ~~~~ 178 (206)
.++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8754
No 60
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=1e-20 Score=132.85 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=77.0
Q ss_pred CCCEEEEeCCCC------CCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCC-ee
Q 028651 97 VGTKLYVSNLHP------GVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG-KP 168 (206)
Q Consensus 97 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g-~~ 168 (206)
.+++|||+|||+ ++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 368999999999 99999999999999999999999998 79999999999999999999999999999999 99
Q ss_pred EEEEEecCC
Q 028651 169 MKIEVVGTN 177 (206)
Q Consensus 169 i~V~~a~~~ 177 (206)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999753
No 61
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.2e-20 Score=130.42 Aligned_cols=85 Identities=24% Similarity=0.290 Sum_probs=79.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
...++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++. |+..|+|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 357999999999999999999999999999999999997 899999999999999999999999 999999999999999
Q ss_pred cCCCCCC
Q 028651 175 GTNAEIP 181 (206)
Q Consensus 175 ~~~~~~~ 181 (206)
.+....+
T Consensus 93 ~~~~~~~ 99 (105)
T 2dh8_A 93 TPRGMQP 99 (105)
T ss_dssp CCSSCCT
T ss_pred cCCCCCC
Confidence 8766433
No 62
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=128.01 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=75.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|++|++.||+..|+|+.|+|++++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 35689999999999999999999999999999998554 5588999999999999999999999999999999999998
Q ss_pred CCCC
Q 028651 176 TNAE 179 (206)
Q Consensus 176 ~~~~ 179 (206)
+...
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7553
No 63
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=4.3e-20 Score=133.03 Aligned_cols=80 Identities=20% Similarity=0.301 Sum_probs=75.9
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|+|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 457899999999999999999999999999999999997 8999999999999999999999999999999999999997
Q ss_pred c
Q 028651 175 G 175 (206)
Q Consensus 175 ~ 175 (206)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 64
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-20 Score=129.35 Aligned_cols=83 Identities=22% Similarity=0.247 Sum_probs=76.7
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
...++|||+|||+++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 356899999999999999999999999999888777776 8899999999999999999999999999999999999998
Q ss_pred cCCC
Q 028651 175 GTNA 178 (206)
Q Consensus 175 ~~~~ 178 (206)
..+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7643
No 65
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=1.6e-19 Score=123.08 Aligned_cols=79 Identities=22% Similarity=0.409 Sum_probs=74.0
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
..+.++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++. ++..|+|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 3467999999999999999999999999999999999998 799999999999999999999965 88899999999987
Q ss_pred e
Q 028651 174 V 174 (206)
Q Consensus 174 a 174 (206)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 66
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=128.08 Aligned_cols=85 Identities=14% Similarity=0.206 Sum_probs=77.8
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCC-eEEEEEE-ECC-CCCCceEEEEEEccHHHHHHHHHHhC--CceeCCeeEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGE-LKRYAIH-FDK-NGRPSGSAEVVYARRSDAFAALKRYN--NVLLDGKPMK 170 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~-~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~--g~~i~g~~i~ 170 (206)
.+.++|||+|||+++++++|+++|+.||. |..|.++ .++ ++.++|||||+|.+.++|++|++.|| +..|+|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999998 9999998 666 78999999999999999999999996 5899999999
Q ss_pred EEEecCCCCC
Q 028651 171 IEVVGTNAEI 180 (206)
Q Consensus 171 V~~a~~~~~~ 180 (206)
|.|+.+....
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999986643
No 67
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=1.6e-19 Score=137.65 Aligned_cols=85 Identities=26% Similarity=0.433 Sum_probs=79.1
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 028651 174 VGTNAE 179 (206)
Q Consensus 174 a~~~~~ 179 (206)
+.+...
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 987653
No 68
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=137.81 Aligned_cols=82 Identities=20% Similarity=0.329 Sum_probs=76.9
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccC--CeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
..++|||+|||+++++++|+++|+.|| .|..|.|+.++ +|.++|||||+|.+.++|++||+.||+..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 99999999998 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 028651 174 VGTNA 178 (206)
Q Consensus 174 a~~~~ 178 (206)
+.+..
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97543
No 69
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.81 E-value=3.7e-19 Score=125.27 Aligned_cols=82 Identities=26% Similarity=0.354 Sum_probs=74.4
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEE
Q 028651 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (206)
Q Consensus 93 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 172 (206)
....+.++|||+|||+++++++|+++|+.||.|..|.++ ++||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 344567999999999999999999999999999999986 4599999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 028651 173 VVGTNAEIP 181 (206)
Q Consensus 173 ~a~~~~~~~ 181 (206)
++.+.....
T Consensus 79 ~a~~~~~~~ 87 (103)
T 2dgu_A 79 FAKPPDQKR 87 (103)
T ss_dssp ECCCCCCCC
T ss_pred EcCCCcccc
Confidence 998876544
No 70
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.2e-20 Score=129.15 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=73.5
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCC--ceeCCeeEEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKIEV 173 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g--~~i~g~~i~V~~ 173 (206)
.+.++|||+|||+++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.|++ ..|+|+.|.|.+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45799999999999999999999999999999999864 68999999999999999998864 789999999999
Q ss_pred ecCCCCCC
Q 028651 174 VGTNAEIP 181 (206)
Q Consensus 174 a~~~~~~~ 181 (206)
++++....
T Consensus 89 A~~~~~~~ 96 (105)
T 1sjq_A 89 SNHKELKT 96 (105)
T ss_dssp CSSSSCCC
T ss_pred cCCCCCCc
Confidence 98766443
No 71
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.2e-20 Score=129.34 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=75.4
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
..++|||+|||+++|+++|+++|+.||.|..|.|+.++.+.++|||||+|.+.++|++|++ +++..|+|+.|.|.++.+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 4589999999999999999999999999999999999889999999999999999999999 899999999999999875
No 72
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=3.4e-20 Score=128.41 Aligned_cols=80 Identities=23% Similarity=0.264 Sum_probs=74.2
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
..++|||+|||+++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999988888876 88999999999999999999999999999999999999876
Q ss_pred C
Q 028651 176 T 176 (206)
Q Consensus 176 ~ 176 (206)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 73
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=2.3e-19 Score=135.55 Aligned_cols=84 Identities=25% Similarity=0.362 Sum_probs=79.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
...++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 028651 175 GTNAE 179 (206)
Q Consensus 175 ~~~~~ 179 (206)
.+...
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 97653
No 74
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.9e-20 Score=130.84 Aligned_cols=83 Identities=19% Similarity=0.516 Sum_probs=78.5
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
+.++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35899999999999999999999999999999999997 88999999999999999999999999999999999999998
Q ss_pred CCCC
Q 028651 176 TNAE 179 (206)
Q Consensus 176 ~~~~ 179 (206)
+...
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 7653
No 75
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.7e-19 Score=122.20 Aligned_cols=78 Identities=22% Similarity=0.320 Sum_probs=72.7
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
..+.++|||+|||+++++++|+++|+.||.|..|.+. +|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 3467999999999999999999999999999999987 579999999999999999999999999999999999
Q ss_pred cCCCC
Q 028651 175 GTNAE 179 (206)
Q Consensus 175 ~~~~~ 179 (206)
.+...
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 76
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-20 Score=127.15 Aligned_cols=80 Identities=21% Similarity=0.271 Sum_probs=75.1
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 467999999999999999999999999999999999997 8999999999999999999999999999999999988665
Q ss_pred c
Q 028651 175 G 175 (206)
Q Consensus 175 ~ 175 (206)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 77
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.9e-20 Score=133.47 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=77.2
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCe-EEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGEL-KRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v-~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|+.||.| ..|.|+.++++.++|||||+|.+.++|++||+. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 357899999999999999999999999999 889999999999999999999999999999988 999999999999999
Q ss_pred cCCC
Q 028651 175 GTNA 178 (206)
Q Consensus 175 ~~~~ 178 (206)
.+..
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8654
No 78
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=125.25 Aligned_cols=80 Identities=25% Similarity=0.420 Sum_probs=73.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
.+.++|||+|||+++++++|+++|+.||.| .++.+.++.++|||||+|.+.++|++|++.||+..|+|+.|+|+++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 357999999999999999999999999976 56666788999999999999999999999999999999999999998
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
++.
T Consensus 90 ~~~ 92 (101)
T 2fc9_A 90 PRG 92 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 79
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=2.3e-19 Score=127.80 Aligned_cols=83 Identities=23% Similarity=0.334 Sum_probs=75.8
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
...++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++.+ +..|+|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 457899999999999999999999999999999999998 7999999999999999999999986 59999999999999
Q ss_pred cCCCC
Q 028651 175 GTNAE 179 (206)
Q Consensus 175 ~~~~~ 179 (206)
.+...
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87654
No 80
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=127.92 Aligned_cols=83 Identities=28% Similarity=0.452 Sum_probs=76.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHH---HHHhccCCeEEEEEEECC-CC---CCceEEEEEEccHHHHHHHHHHhCCceeCCee
Q 028651 96 EVGTKLYVSNLHPGVTNDDIR---ELFSEIGELKRYAIHFDK-NG---RPSGSAEVVYARRSDAFAALKRYNNVLLDGKP 168 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~---~~F~~~G~v~~v~i~~~~-~g---~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 168 (206)
...++|||+|||+++++++|+ ++|++||.|..|.|+.+. ++ .++|||||+|.+.++|++|++.||+..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356899999999999999999 999999999999999887 33 56699999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 028651 169 MKIEVVGTNA 178 (206)
Q Consensus 169 i~V~~a~~~~ 178 (206)
|+|.++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998765
No 81
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=125.17 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=72.2
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCce--eCCeeEEEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL--LDGKPMKIE 172 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~--i~g~~i~V~ 172 (206)
..++++|||+|||+++++++|+++|++||.|.+|.++. .+|||||+|.+.++|++|++.|++.. |.|+.|.|+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 34689999999999999999999999999999999875 46899999999999999999999864 889999999
Q ss_pred EecCCC
Q 028651 173 VVGTNA 178 (206)
Q Consensus 173 ~a~~~~ 178 (206)
+++.+.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998764
No 82
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.8e-19 Score=122.63 Aligned_cols=74 Identities=23% Similarity=0.262 Sum_probs=70.4
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
.+..|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|++|++.||+..+.|+.|.|.+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 368899999999999999999999999999999875 68999999999999999999999999999999999985
No 83
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=128.83 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=77.2
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+. ++..|+|+.|.|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 5899999999999999999999999999999999997 799999999999999999999998 99999999999999988
Q ss_pred CCC
Q 028651 177 NAE 179 (206)
Q Consensus 177 ~~~ 179 (206)
...
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 664
No 84
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=127.91 Aligned_cols=81 Identities=25% Similarity=0.390 Sum_probs=74.8
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
...++|||+|||+++++++|+++|+.||.+ .|.|+.+++++++|||||+|.+.++|++||+ +|+..|+++.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 356899999999999999999999999954 9999999999999999999999999999995 69999999999999988
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
+..
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 85
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=5.4e-20 Score=136.07 Aligned_cols=83 Identities=24% Similarity=0.352 Sum_probs=78.8
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|++++
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46899999999999999999999999999999999988 89999999999999999999999999999999999999998
Q ss_pred CCCC
Q 028651 176 TNAE 179 (206)
Q Consensus 176 ~~~~ 179 (206)
+...
T Consensus 126 ~~~~ 129 (135)
T 2lea_A 126 YGRP 129 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 86
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=128.37 Aligned_cols=83 Identities=19% Similarity=0.370 Sum_probs=76.8
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 94 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
.....++|||+|||+++++++|+++|+.||.|..|.+..++. .++|||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 344678999999999999999999999999999999998864 3889999999999999999999999999999999999
Q ss_pred ecCC
Q 028651 174 VGTN 177 (206)
Q Consensus 174 a~~~ 177 (206)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9875
No 87
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=126.15 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=76.4
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEE-EEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
...++|||+|||+++++++|+++|+.||.|.. |.|+.+.+++++|||||+|.+.++|++||+. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 35689999999999999999999999999987 8888888999999999999999999999998 999999999999998
Q ss_pred cCCC
Q 028651 175 GTNA 178 (206)
Q Consensus 175 ~~~~ 178 (206)
....
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7654
No 88
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=127.18 Aligned_cols=81 Identities=19% Similarity=0.337 Sum_probs=76.5
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCcee--------CCee
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL--------DGKP 168 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i--------~g~~ 168 (206)
..++|||+|||+++++++|+++|+.||.|..|.|+.++++.++|||||+|.+.++|++|++.||+..| .+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~ 103 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEP 103 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999 5778
Q ss_pred EEEEEecCC
Q 028651 169 MKIEVVGTN 177 (206)
Q Consensus 169 i~V~~a~~~ 177 (206)
|.|.|+.+.
T Consensus 104 l~v~~a~p~ 112 (114)
T 1x5o_A 104 LLCKFSGPS 112 (114)
T ss_dssp BEEEECCCS
T ss_pred eeEEccCCC
Confidence 999999864
No 89
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=127.54 Aligned_cols=83 Identities=18% Similarity=0.297 Sum_probs=75.9
Q ss_pred CCCCCCEEEEeCCCCCC------cHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCe
Q 028651 94 GIEVGTKLYVSNLHPGV------TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK 167 (206)
Q Consensus 94 ~~~~~~~l~V~nLp~~~------te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~ 167 (206)
.....++|||+|||+.+ ++++|+++|+.||.|..|.|+ ..+|.++|||||+|.+.++|++|++.|||..|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 33457899999999999 889999999999999999988 45889999999999999999999999999999998
Q ss_pred -eEEEEEecCC
Q 028651 168 -PMKIEVVGTN 177 (206)
Q Consensus 168 -~i~V~~a~~~ 177 (206)
.|+|.++.+.
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998754
No 90
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.80 E-value=2e-19 Score=129.99 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=76.7
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCC---eEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGE---LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~---v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 172 (206)
...++|||+|||+++++++|+++|+.||. |..|.|+.+++|+++|||||+|.+.++|++||+ ||+..|+|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 35689999999999999999999999998 899999999989999999999999999999999 89999999999999
Q ss_pred EecCCC
Q 028651 173 VVGTNA 178 (206)
Q Consensus 173 ~a~~~~ 178 (206)
++....
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987543
No 91
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.8e-19 Score=123.57 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=72.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHh--CCceeCCeeEEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY--NNVLLDGKPMKIEV 173 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l--~g~~i~g~~i~V~~ 173 (206)
.++++|||+|||+++++++|+++|+.||.|..|.++.+ +|||||+|.+.++|++|++.| ++..|.|+.|.|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 35789999999999999999999999999999988764 789999999999999999987 46789999999999
Q ss_pred ecCCCCC
Q 028651 174 VGTNAEI 180 (206)
Q Consensus 174 a~~~~~~ 180 (206)
++.+...
T Consensus 88 a~~~~~~ 94 (101)
T 2cq1_A 88 SNHKELK 94 (101)
T ss_dssp CSCSSCC
T ss_pred cCcccCc
Confidence 9976543
No 92
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=6e-19 Score=153.78 Aligned_cols=89 Identities=22% Similarity=0.397 Sum_probs=81.7
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+.||+++|.++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCCCCCccc
Q 028651 175 GTNAEIPLQA 184 (206)
Q Consensus 175 ~~~~~~~~~~ 184 (206)
.+.......+
T Consensus 180 ~~~~~~~~~~ 189 (437)
T 3pgw_S 180 RGRTVKGWRP 189 (437)
T ss_pred CCCCCCCCCC
Confidence 9766544333
No 93
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=5.3e-19 Score=128.37 Aligned_cols=80 Identities=31% Similarity=0.510 Sum_probs=76.2
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
.++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|+ .||+..|+|+.|+|+++++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 5899999999999999999999999999999999997 8999999999999999999999 7999999999999999986
Q ss_pred CC
Q 028651 177 NA 178 (206)
Q Consensus 177 ~~ 178 (206)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 94
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-19 Score=129.21 Aligned_cols=80 Identities=19% Similarity=0.340 Sum_probs=76.1
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|+ .||+..|+|+.|+|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 5899999999999999999999999999999999998 7899999999999999999999 9999999999999999986
Q ss_pred CC
Q 028651 177 NA 178 (206)
Q Consensus 177 ~~ 178 (206)
..
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 95
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.4e-19 Score=123.02 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=72.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeC--CeeEEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD--GKPMKIEV 173 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~--g~~i~V~~ 173 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.+..+ +|||||+|.+.++|++|++.||+..|+ |+.|+|++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 35689999999999999999999999999999988753 689999999999999999999999999 99999999
Q ss_pred ecCCC
Q 028651 174 VGTNA 178 (206)
Q Consensus 174 a~~~~ 178 (206)
++++.
T Consensus 90 a~~~~ 94 (97)
T 1why_A 90 AKSGP 94 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98754
No 96
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=6.5e-20 Score=128.59 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=74.6
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC--CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEE
Q 028651 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK--NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (206)
Q Consensus 94 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~--~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 171 (206)
.....++|||+|||+++++++|+++|+.|| |..|.|+.++ ++.++|||||+|.+.++|++|+ .||+..|+|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345679999999999999999999999999 9999999986 7999999999999999999999 89999999999999
Q ss_pred EEecCCC
Q 028651 172 EVVGTNA 178 (206)
Q Consensus 172 ~~a~~~~ 178 (206)
+++.+..
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998754
No 97
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=130.92 Aligned_cols=78 Identities=24% Similarity=0.368 Sum_probs=74.4
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
+.++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|++|
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 46899999999999999999999999999999999997 8999999999999999999999999999999999999885
No 98
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.4e-19 Score=123.57 Aligned_cols=81 Identities=23% Similarity=0.341 Sum_probs=74.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|+.| ..|.++.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 467999999999999999999999977 367788887 8899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 028651 175 GTNAE 179 (206)
Q Consensus 175 ~~~~~ 179 (206)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 2fc8_A 90 KPKGE 94 (102)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 87654
No 99
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.9e-20 Score=131.00 Aligned_cols=85 Identities=33% Similarity=0.434 Sum_probs=73.7
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 457999999999999999999999999998433222222 7889999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 028651 175 GTNAEI 180 (206)
Q Consensus 175 ~~~~~~ 180 (206)
.+....
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 976643
No 100
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.79 E-value=9.3e-20 Score=133.94 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=77.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEE--EEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCc----eeCCee
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKR--YAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNV----LLDGKP 168 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~--v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~----~i~g~~ 168 (206)
...++|||+|||+++++++|+++|+.||.|.. |+|+.++ ++.++|||||+|.+. +|++|++.||+. .|+|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45789999999999999999999999999977 9999999 999999999999999 999999999999 999999
Q ss_pred EEEEEecCCC
Q 028651 169 MKIEVVGTNA 178 (206)
Q Consensus 169 i~V~~a~~~~ 178 (206)
|+|+++.+..
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998754
No 101
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1.1e-19 Score=120.47 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=70.9
Q ss_pred EEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 100 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
+|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++ ||+..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998 89999999999999999999998 8999999999999875
No 102
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=6.8e-19 Score=128.86 Aligned_cols=84 Identities=21% Similarity=0.384 Sum_probs=75.1
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHH----HHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCee
Q 028651 93 SGIEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP 168 (206)
Q Consensus 93 ~~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 168 (206)
....+.++|||+|||+.+++++|+ ++|++||.|..|.+. .++.++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 334567899999999999999875 699999999988764 46788999999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 028651 169 MKIEVVGTNA 178 (206)
Q Consensus 169 i~V~~a~~~~ 178 (206)
|+|.|++.+.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999998765
No 103
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=5.5e-20 Score=126.19 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=72.9
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 177 (206)
++|||+|||+++++++|+++|+.||.|..|.+..++ ++.++|||||+|.+.+ |++|++.||+..++|+.|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999999998 7999999999999999 99999999999999999999999876
Q ss_pred CC
Q 028651 178 AE 179 (206)
Q Consensus 178 ~~ 179 (206)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 104
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=3.4e-19 Score=127.48 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=72.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccC-CeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
...++|||+|||+++++++|+++|+.|| .|..+.+... .++|||||+|.+.++|++||+.||+..|+|+.|+|+++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3568999999999999999999999999 8999988532 47899999999999999999999999999999999998
Q ss_pred cCCC
Q 028651 175 GTNA 178 (206)
Q Consensus 175 ~~~~ 178 (206)
...+
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7543
No 105
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=3.9e-19 Score=124.54 Aligned_cols=76 Identities=26% Similarity=0.396 Sum_probs=72.4
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 178 (206)
++|||+|||+++++++|+++|+.||.|..|.++.+ ++|||||+|.+.++|++|++.||+..++|+.|+|+++.+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999999876 78899999999999999999999999999999999998765
No 106
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=2.8e-19 Score=132.37 Aligned_cols=80 Identities=18% Similarity=0.203 Sum_probs=75.8
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCC---eEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGE---LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~---v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
..++|||+|||+++|+++|+++|+.||. |..|.|+.++.|+++|||||+|.+.++|++||+ ||+..|+|+.|.|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 4689999999999999999999999999 889999999989999999999999999999999 999999999999999
Q ss_pred ecCC
Q 028651 174 VGTN 177 (206)
Q Consensus 174 a~~~ 177 (206)
+...
T Consensus 122 a~~~ 125 (136)
T 2hgl_A 122 SHRT 125 (136)
T ss_dssp CCHH
T ss_pred CChH
Confidence 8643
No 107
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-19 Score=120.66 Aligned_cols=75 Identities=24% Similarity=0.368 Sum_probs=72.1
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
++|||+|||+++++++|+++|++||.|..|.++.++ ++.++|||||+|.+.++|++|++.++ ..++|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999998 79999999999999999999999999 9999999999986
No 108
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.78 E-value=3.7e-19 Score=127.97 Aligned_cols=77 Identities=21% Similarity=0.391 Sum_probs=66.7
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCee-----EEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP-----MKI 171 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~-----i~V 171 (206)
..++|||+|||+++++++|+++|+.||.|..|.|+.+ |||||+|.+.++|++||+.||+..|+|+. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 4689999999999999999999999999999999765 89999999999999999999999999998 777
Q ss_pred EEecCCCC
Q 028651 172 EVVGTNAE 179 (206)
Q Consensus 172 ~~a~~~~~ 179 (206)
..+.+...
T Consensus 89 ~~~~~~~~ 96 (115)
T 3beg_B 89 KVDGPRSP 96 (115)
T ss_dssp EECC----
T ss_pred ccCCCCCC
Confidence 77665443
No 109
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=118.98 Aligned_cols=78 Identities=29% Similarity=0.397 Sum_probs=72.0
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
..+.++|||+|||+++++++|+++|+.||.|..|.+.. +||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34679999999999999999999999999999999864 49999999999999999999999999999999999
Q ss_pred cCCCC
Q 028651 175 GTNAE 179 (206)
Q Consensus 175 ~~~~~ 179 (206)
.+...
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 87653
No 110
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.4e-19 Score=127.38 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=73.1
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCC--ceeCCeeEEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKIEV 173 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g--~~i~g~~i~V~~ 173 (206)
.++++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.|++ ..|.|+.|+|.+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 46789999999999999999999999999999999864 68999999999999999999874 689999999999
Q ss_pred ecCCCCC
Q 028651 174 VGTNAEI 180 (206)
Q Consensus 174 a~~~~~~ 180 (206)
++++...
T Consensus 104 a~~k~~~ 110 (119)
T 2ad9_A 104 SNHKELK 110 (119)
T ss_dssp CSSSSCC
T ss_pred ccCCCCC
Confidence 9876644
No 111
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=123.25 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=71.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCC--ceeCCeeEEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKIEV 173 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g--~~i~g~~i~V~~ 173 (206)
.++++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.|++ ..|+|+.|.|+|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 46789999999999999999999999999999998753 68999999999999999998865 459999999999
Q ss_pred ecCCCC
Q 028651 174 VGTNAE 179 (206)
Q Consensus 174 a~~~~~ 179 (206)
++.+..
T Consensus 88 a~~~~~ 93 (104)
T 1wex_A 88 STSKRI 93 (104)
T ss_dssp CSSSSC
T ss_pred ccCccc
Confidence 987653
No 112
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=123.65 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=73.9
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
...++|||+|||+++++++|+++|+.||.|..|.|+.+ +|||||+|.+.++|++|++.||+..|+|+.|+|.|++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 35789999999999999999999999999999999875 6899999999999999999999999999999999998
Q ss_pred CCCC
Q 028651 176 TNAE 179 (206)
Q Consensus 176 ~~~~ 179 (206)
+...
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
No 113
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.6e-19 Score=121.55 Aligned_cols=79 Identities=33% Similarity=0.415 Sum_probs=70.9
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCC-eEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCC-ceeCCeeEEEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGE-LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN-VLLDGKPMKIE 172 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g-~~i~g~~i~V~ 172 (206)
..+.++|||+|||+++++++|+++|+.||. |..+.+. ++|||||+|.+.++|++|++.||+ ..|+|+.|+|+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 346789999999999999999999999999 6666653 478999999999999999999999 99999999999
Q ss_pred EecCCCC
Q 028651 173 VVGTNAE 179 (206)
Q Consensus 173 ~a~~~~~ 179 (206)
++.++..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9987654
No 114
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-19 Score=130.75 Aligned_cols=81 Identities=17% Similarity=0.329 Sum_probs=73.3
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEE-EEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYA-IHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~-i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
..++|||+|||+++++++|+++|+.||.|..+. +..+.++.++|||||+|.+.++|++||+ ||+..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 468999999999999999999999999998844 4444599999999999999999999999 99999999999999997
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
...
T Consensus 103 ~~~ 105 (124)
T 1wel_A 103 KKG 105 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 115
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.78 E-value=2.6e-19 Score=124.42 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=75.3
Q ss_pred CCCCCEEEEeCCCCCCcHHHHH----HHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 170 (206)
..++++|||+|||+++++++|+ ++|+.||.|..|.+.. ++.++|||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 3467999999999999999999 9999999999998863 566789999999999999999999999999999999
Q ss_pred EEEecCCCC
Q 028651 171 IEVVGTNAE 179 (206)
Q Consensus 171 V~~a~~~~~ 179 (206)
|+++.++..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999987653
No 116
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4.1e-19 Score=126.69 Aligned_cols=77 Identities=19% Similarity=0.345 Sum_probs=73.1
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
..+|||+|||+++++++|+++|+.| .|..|.|+.+++|+++|||||+|.+.++|++|| .+|+..|+|+.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4799999999999999999999999 899999999999999999999999999999999 6899999999999988864
No 117
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.6e-19 Score=124.46 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=70.9
Q ss_pred CCCCEEEEeCCCC-CCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCC--ceeCCeeEEEE
Q 028651 96 EVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKIE 172 (206)
Q Consensus 96 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g--~~i~g~~i~V~ 172 (206)
.++++|||+|||+ ++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.||+ ..|+|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 3578999999999 9999999999999999999999864 47999999999999999999886 46999999999
Q ss_pred EecCCC
Q 028651 173 VVGTNA 178 (206)
Q Consensus 173 ~a~~~~ 178 (206)
++....
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 998644
No 118
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.1e-18 Score=118.94 Aligned_cols=78 Identities=28% Similarity=0.429 Sum_probs=71.5
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhcc--CCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEI--GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 172 (206)
..+.++|||+|||+++++++|+++|+.| |.|..|.+. +|||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3467899999999999999999999999 999998874 5799999999999999999999999999999999
Q ss_pred EecCCCC
Q 028651 173 VVGTNAE 179 (206)
Q Consensus 173 ~a~~~~~ 179 (206)
++++...
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9987653
No 119
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=4.6e-19 Score=142.22 Aligned_cols=80 Identities=20% Similarity=0.266 Sum_probs=75.7
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccC--CeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
..++|||+||++++++++|+++|+.|| .|..|.|+.++ +++++|||||+|.+.++|++||+.||+..|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467999999999999999999999999 99999999998 999999999999999999999999999999999999999
Q ss_pred ecC
Q 028651 174 VGT 176 (206)
Q Consensus 174 a~~ 176 (206)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 120
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.3e-19 Score=121.86 Aligned_cols=79 Identities=16% Similarity=0.339 Sum_probs=71.8
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
...++|||+|||+++++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|++|++.||+..|+|+.|+|+++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3578999999999999999999999999997 666653 578999999999999999999999999999999999998
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 121
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=117.91 Aligned_cols=75 Identities=24% Similarity=0.403 Sum_probs=70.4
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHh-CCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY-NNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l-~g~~i~g~~i~V~~a 174 (206)
...++|||+|||+++++++|+++|+.||.|..|.+.. ++|||||+|.+.++|++|++.| ++..++|+.|+|+|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 4578999999999999999999999999999999986 4689999999999999999998 999999999999997
Q ss_pred c
Q 028651 175 G 175 (206)
Q Consensus 175 ~ 175 (206)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 122
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=118.46 Aligned_cols=77 Identities=23% Similarity=0.340 Sum_probs=71.6
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.++. +||||+|.+.++|++|++.||+..|+|+.|+|.++.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 4678999999999999999999999999999999874 499999999999999999999999999999999998
Q ss_pred CCCC
Q 028651 176 TNAE 179 (206)
Q Consensus 176 ~~~~ 179 (206)
+...
T Consensus 80 ~~~~ 83 (90)
T 2dnp_A 80 KGQK 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 123
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.78 E-value=8.6e-20 Score=135.61 Aligned_cols=81 Identities=23% Similarity=0.361 Sum_probs=75.5
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
..++|||+|||+++|+++|+++|+.|| |..|.|+.+++++++|||||+|.+.++|++|| .+|+..|+++.|+|.++.+
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence 468999999999999999999999999 77999999999999999999999999999999 7899999999999999887
Q ss_pred CCC
Q 028651 177 NAE 179 (206)
Q Consensus 177 ~~~ 179 (206)
...
T Consensus 123 ~~~ 125 (139)
T 2hgn_A 123 TGA 125 (139)
T ss_dssp SCC
T ss_pred CCC
Confidence 553
No 124
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.78 E-value=3.1e-18 Score=119.44 Aligned_cols=78 Identities=21% Similarity=0.367 Sum_probs=71.2
Q ss_pred CCCCCCCEEEEeCCCC-CCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEE
Q 028651 93 SGIEVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (206)
Q Consensus 93 ~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 171 (206)
....+.++|||+|||+ ++++++|+++|+.||.|..|.+. +|||||+|.+.++|++|++.||+..++|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445689999999998 99999999999999999999983 689999999999999999999999999999999
Q ss_pred EEecCC
Q 028651 172 EVVGTN 177 (206)
Q Consensus 172 ~~a~~~ 177 (206)
+++++.
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 999864
No 125
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=121.27 Aligned_cols=79 Identities=27% Similarity=0.418 Sum_probs=73.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
.+.++|||+|||+++++++|+++|+.||.|..|.+.. .+|||||+|.+.++|++|++.||+..|+|+.|+|+++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 4578999999999999999999999999999999985 36899999999999999999999999999999999998
Q ss_pred CCCC
Q 028651 176 TNAE 179 (206)
Q Consensus 176 ~~~~ 179 (206)
+...
T Consensus 88 ~~~~ 91 (99)
T 2cpj_A 88 HSAS 91 (99)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7553
No 126
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=4.3e-19 Score=119.55 Aligned_cols=73 Identities=21% Similarity=0.348 Sum_probs=68.0
Q ss_pred CCEEEEeCCCCCC------cHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCe-eEE
Q 028651 98 GTKLYVSNLHPGV------TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK-PMK 170 (206)
Q Consensus 98 ~~~l~V~nLp~~~------te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~-~i~ 170 (206)
+++|||+|||+.+ ++++|+++|++||.|..|.++ ..+|.++|||||+|.+.++|++|++.|||..|+|+ .|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3789999999999 789999999999999999987 45889999999999999999999999999999999 887
Q ss_pred E
Q 028651 171 I 171 (206)
Q Consensus 171 V 171 (206)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 127
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=1.9e-18 Score=123.82 Aligned_cols=80 Identities=23% Similarity=0.362 Sum_probs=74.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
.++++|||+|||+++++++|+++|+.||.|..|.++.+ +.++|||||+|.+.++|++|++.||+..++|+.|.|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 46789999999999999999999999999999999865 4468999999999999999999999999999999999998
Q ss_pred CC
Q 028651 176 TN 177 (206)
Q Consensus 176 ~~ 177 (206)
+.
T Consensus 84 ~~ 85 (115)
T 3lqv_A 84 AN 85 (115)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 128
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.1e-18 Score=122.32 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=71.4
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
...++|||+|||+++++++|+++|+.||.|..|.+. .++|||||+|.+.++|++|++.||+..|+|+.|+|.|++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 357899999999999999999999999999999987 367899999999999999999999999999999999987
Q ss_pred C
Q 028651 176 T 176 (206)
Q Consensus 176 ~ 176 (206)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 129
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=1.6e-18 Score=123.24 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=72.4
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
....++|||+|||+++++++|+++|+.||.|..|.+. +|||||+|.+.++|++|++.||+..|+|+.|.|+++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 3467999999999999999999999999999999987 689999999999999999999999999999999999
Q ss_pred cCCCC
Q 028651 175 GTNAE 179 (206)
Q Consensus 175 ~~~~~ 179 (206)
.++..
T Consensus 101 ~~~~~ 105 (108)
T 2jvo_A 101 KLPAK 105 (108)
T ss_dssp SCCC-
T ss_pred cCCCC
Confidence 87653
No 130
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-19 Score=127.40 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=73.8
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
...++|||+|||+++++++|+++|+.||.|.. .++.+. ++.++|||||+|.+.++|++|++ ||+..|+|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999998887 455554 78899999999999999999999 9999999999999999
Q ss_pred cCCCC
Q 028651 175 GTNAE 179 (206)
Q Consensus 175 ~~~~~ 179 (206)
.+...
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87653
No 131
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.77 E-value=6.7e-19 Score=128.63 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=73.6
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeE--EEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELK--RYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~--~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 172 (206)
....++|||+|||+++++++|+++|+.| .|. .|.|+.+++|+++|||||+|.+.++|++||+. ++..|+|+.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 3457899999999999999999999999 677 89999998899999999999999999999986 7799999999999
Q ss_pred EecC
Q 028651 173 VVGT 176 (206)
Q Consensus 173 ~a~~ 176 (206)
++..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8864
No 132
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=129.06 Aligned_cols=88 Identities=27% Similarity=0.360 Sum_probs=75.9
Q ss_pred CCCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEE------EEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC
Q 028651 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY------AIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (206)
Q Consensus 93 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v------~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g 166 (206)
....++++|||+|||+++++++|+++|+.||.|..| .+....++.++|||||+|.+.++|++|++.||+..|+|
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 345678999999999999999999999999998764 22222478899999999999999999999999999999
Q ss_pred eeEEEEEecCCCCC
Q 028651 167 KPMKIEVVGTNAEI 180 (206)
Q Consensus 167 ~~i~V~~a~~~~~~ 180 (206)
+.|.|.++++....
T Consensus 120 ~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 120 KPMVVQFARSARPK 133 (143)
T ss_dssp EECEEEECCCSCC-
T ss_pred cEEEEEECCCCCCc
Confidence 99999999875543
No 133
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.77 E-value=3.9e-18 Score=134.88 Aligned_cols=83 Identities=31% Similarity=0.392 Sum_probs=77.4
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|++|++.+|+..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 457899999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred cCCC
Q 028651 175 GTNA 178 (206)
Q Consensus 175 ~~~~ 178 (206)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7544
No 134
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.8e-18 Score=120.19 Aligned_cols=77 Identities=22% Similarity=0.353 Sum_probs=71.1
Q ss_pred CCCCCEEEEeCCCC-CCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 95 IEVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 95 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
..+.++|||+|||+ ++++++|+++|+.||.|..|.+. +|||||+|.+.++|++|++.||+..+.|+.|.|++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34689999999999 99999999999999999999984 67999999999999999999999999999999999
Q ss_pred ecCCC
Q 028651 174 VGTNA 178 (206)
Q Consensus 174 a~~~~ 178 (206)
+.+..
T Consensus 80 a~~~~ 84 (96)
T 2kvi_A 80 SSSNA 84 (96)
T ss_dssp EECCC
T ss_pred cCcCC
Confidence 98765
No 135
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=3.3e-20 Score=133.41 Aligned_cols=83 Identities=24% Similarity=0.461 Sum_probs=78.3
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEE--------EEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCe
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKR--------YAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK 167 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~ 167 (206)
+.++|||+|||+++++++|+++|+.||.|.. |.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 5789999999999999999999999999998 8999987 789999999999999999999999999999999
Q ss_pred eEEEEEecCCCC
Q 028651 168 PMKIEVVGTNAE 179 (206)
Q Consensus 168 ~i~V~~a~~~~~ 179 (206)
.|+|+++.++..
T Consensus 86 ~l~V~~a~~~~~ 97 (116)
T 2lcw_A 86 PIKVSFATRRAD 97 (116)
Confidence 999999987653
No 136
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=120.88 Aligned_cols=79 Identities=22% Similarity=0.425 Sum_probs=71.9
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
.+.++|||+|||+++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|++|++.||+..|+|+.|.|.++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 356899999999999999999999999987766 3467889999999999999999999999999999999999998
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
++.
T Consensus 90 ~~~ 92 (96)
T 1fjc_A 90 EKG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 137
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=3.5e-18 Score=121.58 Aligned_cols=75 Identities=25% Similarity=0.486 Sum_probs=70.2
Q ss_pred CCCEEEEeCCCCC-CcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
..++|||+|||++ +++++|+++|+.||.|..|.+ ++|||||+|.+.++|++|++.||+..|+|+.|+|+++.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4689999999999 999999999999999999998 46899999999999999999999999999999999998
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
++.
T Consensus 99 ~~~ 101 (110)
T 1wf1_A 99 EPK 101 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 138
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-19 Score=126.21 Aligned_cols=82 Identities=13% Similarity=0.213 Sum_probs=76.4
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCC---eEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGE---LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 171 (206)
....++|||+|||+++++++|+++|+.||. |..|.|+.++.|.++|||||+|.+.++|++|++ +|+..|+|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 346789999999999999999999999888 899999999889999999999999999999999 8999999999999
Q ss_pred EEecCC
Q 028651 172 EVVGTN 177 (206)
Q Consensus 172 ~~a~~~ 177 (206)
.++.+.
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 998753
No 139
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=123.58 Aligned_cols=79 Identities=20% Similarity=0.330 Sum_probs=71.3
Q ss_pred CCCCEEEEeCCCCC-CcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhC--CceeCCeeEEEE
Q 028651 96 EVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN--NVLLDGKPMKIE 172 (206)
Q Consensus 96 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~--g~~i~g~~i~V~ 172 (206)
.++++|||+|||++ +++++|+++|++||.|.+|.|+. .+|||||+|.+.++|++|++.|| +..|+|+.|+|.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 35789999999998 99999999999999999999974 57899999999999999999886 466999999999
Q ss_pred EecCCCC
Q 028651 173 VVGTNAE 179 (206)
Q Consensus 173 ~a~~~~~ 179 (206)
++.....
T Consensus 98 ~a~~~~~ 104 (112)
T 1x4f_A 98 LSEKYKK 104 (112)
T ss_dssp EECSCSS
T ss_pred ECccccc
Confidence 9987654
No 140
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-18 Score=122.21 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=71.1
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 177 (206)
.++|||+|||+++++++|+++|++||.|..|.|+. .+|||||+|.+.++|++|++.||+..|+|+.|.|+|+...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 58999999999999999999999999999998864 5689999999999999999999999999999999999865
Q ss_pred C
Q 028651 178 A 178 (206)
Q Consensus 178 ~ 178 (206)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 141
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=126.59 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=74.3
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCe----EEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGEL----KRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v----~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 172 (206)
..++|||+|||+++|+++|+++|+.||.| ..|.|+.+++|+++|||||+|.+.++|++||+. |+..|+++.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 46899999999999999999999999875 689999999999999999999999999999997 9999999999999
Q ss_pred EecCC
Q 028651 173 VVGTN 177 (206)
Q Consensus 173 ~a~~~ 177 (206)
.+...
T Consensus 101 ~a~~~ 105 (123)
T 2dha_A 101 RSTAA 105 (123)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 142
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=1.5e-18 Score=121.80 Aligned_cols=80 Identities=19% Similarity=0.353 Sum_probs=75.8
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
..++|||+|||+++++++|+++|+.||.|..|.++.++++.++|||||+|.+.++|++|++ ++..|+|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4689999999999999999999999999999999999999999999999999999999998 89999999999999986
Q ss_pred CC
Q 028651 177 NA 178 (206)
Q Consensus 177 ~~ 178 (206)
..
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 143
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.6e-18 Score=116.25 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=69.3
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
..++|||+|||+++++++|+++|+.||.|..| +.++ ++. ||||+|.+.++|++|++ ||+..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 46899999999999999999999999999987 5554 555 99999999999999999 99999999999999887
Q ss_pred CCCC
Q 028651 176 TNAE 179 (206)
Q Consensus 176 ~~~~ 179 (206)
+...
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6553
No 144
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=5.4e-19 Score=117.06 Aligned_cols=74 Identities=19% Similarity=0.387 Sum_probs=70.3
Q ss_pred EEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 100 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
+|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++. ++..++|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999987 799999999999999999999986 899999999999875
No 145
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=1.1e-17 Score=125.94 Aligned_cols=81 Identities=30% Similarity=0.436 Sum_probs=77.8
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
.++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++.||+..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5899999999999999999999999999999999998 899999999999999999999999999999999999999986
Q ss_pred CC
Q 028651 177 NA 178 (206)
Q Consensus 177 ~~ 178 (206)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 146
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-17 Score=113.96 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=70.7
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
.+.++|||+|| ++++++|+++|+.||.|..|.|. .++|||||+|.+.++|++|++.||+..|+|+.|+|.++.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 35789999996 89999999999999999999985 467899999999999999999999999999999999998
Q ss_pred CCCC
Q 028651 176 TNAE 179 (206)
Q Consensus 176 ~~~~ 179 (206)
++..
T Consensus 86 ~~~~ 89 (97)
T 1x5p_A 86 KQPM 89 (97)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7653
No 147
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.75 E-value=5.4e-18 Score=115.93 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
..++|||+|||+++++++|+++|++| .|..|.+. .++|||||+|.+.++|++|++.||+..++|+.|+|+++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46899999999999999999999999 99999885 4789999999999999999999999999999999999976
Q ss_pred CC
Q 028651 177 NA 178 (206)
Q Consensus 177 ~~ 178 (206)
+.
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 148
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.7e-17 Score=124.81 Aligned_cols=82 Identities=21% Similarity=0.392 Sum_probs=77.6
Q ss_pred CCCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEE
Q 028651 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (206)
Q Consensus 94 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~ 172 (206)
...+.++|||+|||+++++++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34467899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred Eec
Q 028651 173 VVG 175 (206)
Q Consensus 173 ~a~ 175 (206)
|++
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 149
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=7e-18 Score=116.97 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=71.2
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEE-EEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRY-AIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v-~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
..++|||+|||+++++++|+++|+.||.|..| .++.++. .+.|||+|.+.++|++|++.||+..|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 46899999999999999999999999999999 4777652 2449999999999999999999999999999999998
Q ss_pred CC
Q 028651 176 TN 177 (206)
Q Consensus 176 ~~ 177 (206)
+.
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 150
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.74 E-value=5.8e-18 Score=126.89 Aligned_cols=79 Identities=23% Similarity=0.343 Sum_probs=74.0
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
....++|||+|||+++++++|+++|+.||.|..|.++.+ ++|||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 345789999999999999999999999999999999876 6899999999999999999999999999999999999
Q ss_pred cCC
Q 028651 175 GTN 177 (206)
Q Consensus 175 ~~~ 177 (206)
.++
T Consensus 146 ~~~ 148 (150)
T 2i2y_A 146 NGE 148 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 875
No 151
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=1.6e-17 Score=130.59 Aligned_cols=83 Identities=22% Similarity=0.408 Sum_probs=79.1
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
..++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|.+|++.||+..|+|+.|.|.++.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 46899999999999999999999999999999999997 89999999999999999999999999999999999999998
Q ss_pred CCCC
Q 028651 176 TNAE 179 (206)
Q Consensus 176 ~~~~ 179 (206)
+...
T Consensus 204 ~~~~ 207 (216)
T 2qfj_A 204 TPPM 207 (216)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7653
No 152
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.74 E-value=1.1e-17 Score=126.34 Aligned_cols=82 Identities=26% Similarity=0.352 Sum_probs=78.0
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
++++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++.||+..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999987 89999999999999999999999999999999999999998
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 153
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=113.81 Aligned_cols=76 Identities=25% Similarity=0.276 Sum_probs=67.9
Q ss_pred CCCE-EEEeCCCCCCcHHH----HHHHHhcc-CCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEE
Q 028651 97 VGTK-LYVSNLHPGVTNDD----IRELFSEI-GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (206)
Q Consensus 97 ~~~~-l~V~nLp~~~te~~----L~~~F~~~-G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 170 (206)
+..| |||.|||+.+++++ |+++|+.| |.|.+| ++ |+|||+|.+.++|++|++.|||..+.|++|+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 4555 99999999999988 55899999 599998 23 8999999999999999999999999999999
Q ss_pred EEEecCCCCCC
Q 028651 171 IEVVGTNAEIP 181 (206)
Q Consensus 171 V~~a~~~~~~~ 181 (206)
|.+|++..+.-
T Consensus 78 v~~A~~~sd~~ 88 (96)
T 2diu_A 78 VSFTPKNRELC 88 (96)
T ss_dssp EESSCCSCCCC
T ss_pred EEecCCCccee
Confidence 99999877644
No 154
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.9e-17 Score=123.59 Aligned_cols=80 Identities=29% Similarity=0.363 Sum_probs=75.6
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 178 (206)
++|||+|||+++++++|+++|+.||.|..|.++.++++.++|||||+|.+.++|++|++.||+..+.|+.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 48999999999999999999999999999999999988899999999999999999999999999999999999997654
No 155
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.73 E-value=2.5e-17 Score=125.01 Aligned_cols=80 Identities=19% Similarity=0.173 Sum_probs=72.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC--eeEEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKIEV 173 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g--~~i~V~~ 173 (206)
....+|||+||++.+++++|+++|++||.|.+|.|.... .+|||||+|.+.++|++|++.|||..|.+ +.|+|+|
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 344678999999999999999999999999999987542 57899999999999999999999999965 9999999
Q ss_pred ecCCC
Q 028651 174 VGTNA 178 (206)
Q Consensus 174 a~~~~ 178 (206)
+++..
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 99764
No 156
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.4e-17 Score=120.76 Aligned_cols=78 Identities=18% Similarity=0.314 Sum_probs=71.3
Q ss_pred CEEEEeCC----CCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEcc----HHH----HHHHHH--HhCCce
Q 028651 99 TKLYVSNL----HPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYAR----RSD----AFAALK--RYNNVL 163 (206)
Q Consensus 99 ~~l~V~nL----p~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~----~~~----A~~Ai~--~l~g~~ 163 (206)
++|||+|| |+.+++++|+++|+.||+|.+|.++.|+ ||.++|||||+|.+ +++ |.+|++ .||+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999 99999999999995 333 888988 789999
Q ss_pred eCCeeEEEEEecC
Q 028651 164 LDGKPMKIEVVGT 176 (206)
Q Consensus 164 i~g~~i~V~~a~~ 176 (206)
|+|+.|+|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 157
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.72 E-value=3.9e-17 Score=119.54 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=70.8
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceE-EEEEEccHHHHHHHHHHhCCceeCC--eeEEEEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGS-AEVVYARRSDAFAALKRYNNVLLDG--KPMKIEV 173 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~-afV~f~~~~~A~~Ai~~l~g~~i~g--~~i~V~~ 173 (206)
.--.|||+||++.+|+++|+++|++||.|.+|.+... .+|| |||+|.+.++|++|++.|||..|.+ +.|+|+|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 3457889999999999999999999999999988764 3677 9999999999999999999999988 8999999
Q ss_pred ecCCC
Q 028651 174 VGTNA 178 (206)
Q Consensus 174 a~~~~ 178 (206)
+++..
T Consensus 103 ak~~~ 107 (130)
T 3zzy_A 103 SKLTS 107 (130)
T ss_dssp CSCSS
T ss_pred cCCCc
Confidence 98765
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.72 E-value=4.8e-17 Score=126.18 Aligned_cols=83 Identities=23% Similarity=0.369 Sum_probs=79.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
...++|||+|||+++++++|+++|+.||.|..|.+..++ ++.++|||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 467999999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCC
Q 028651 175 GTNA 178 (206)
Q Consensus 175 ~~~~ 178 (206)
.++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 159
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.72 E-value=4e-17 Score=123.88 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=76.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
...++|||+|||+++++++|+++|+.||.|..|.+..++ ++.++|||||+|.+.++|++|++.||+..|+|+.|.|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 346899999999999999999999999999999999997 8999999999999999999999999999999999999997
Q ss_pred c
Q 028651 175 G 175 (206)
Q Consensus 175 ~ 175 (206)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 160
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=3.8e-17 Score=126.54 Aligned_cols=83 Identities=23% Similarity=0.296 Sum_probs=76.5
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
....++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++. ++..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 3457899999999999999999999999999999999998 799999999999999999999987 89999999999999
Q ss_pred ecCCC
Q 028651 174 VGTNA 178 (206)
Q Consensus 174 a~~~~ 178 (206)
+.+..
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 87654
No 161
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=5.5e-17 Score=125.61 Aligned_cols=84 Identities=15% Similarity=0.313 Sum_probs=75.1
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
...++|||+|||+++++++|+++|+.||.|..|.++.+. ++.++|||||+|.+.++|.+|++. ++..|+|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 356899999999999999999999999999999999998 899999999999999999999987 799999999999999
Q ss_pred cCCCCC
Q 028651 175 GTNAEI 180 (206)
Q Consensus 175 ~~~~~~ 180 (206)
.++...
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 987654
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=5.1e-17 Score=128.46 Aligned_cols=81 Identities=19% Similarity=0.337 Sum_probs=75.0
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
...+|||+|||+++++++|+++|+.||.|..|.|+.+.. .++|||||+|.+.++|++|++.|||..|+|+.|+|.++.+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 357899999999999999999999999999999998864 3789999999999999999999999999999999999986
Q ss_pred CC
Q 028651 177 NA 178 (206)
Q Consensus 177 ~~ 178 (206)
+.
T Consensus 181 ~~ 182 (213)
T 4f02_A 181 RK 182 (213)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 163
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.1e-17 Score=117.48 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=69.6
Q ss_pred CCCCEEEE--eCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCcee-----CCee
Q 028651 96 EVGTKLYV--SNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL-----DGKP 168 (206)
Q Consensus 96 ~~~~~l~V--~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i-----~g~~ 168 (206)
.+..+||| +||++++++++|+++|++||.|..|.|+. .+|||||+|.+.++|++|++.|||..| .+..
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 45789999 66999999999999999999999998763 368999999999999999999999998 6889
Q ss_pred EEEEEecCC
Q 028651 169 MKIEVVGTN 177 (206)
Q Consensus 169 i~V~~a~~~ 177 (206)
|.|.++..-
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999999753
No 164
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.70 E-value=6.4e-17 Score=127.56 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=72.7
Q ss_pred CCCEEEEeCCC-CCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLH-PGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp-~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
++++|||+||| +.+++++|+++|+.||.|.+|+|+.+ .+|||||+|.+.++|++||+.|||..|.|+.|.|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 57899999999 89999999999999999999999865 47899999999999999999999999999999999997
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
...
T Consensus 79 ~~~ 81 (205)
T 3tyt_A 79 QPA 81 (205)
T ss_dssp CSC
T ss_pred CCc
Confidence 554
No 165
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=2.6e-17 Score=124.32 Aligned_cols=79 Identities=19% Similarity=0.343 Sum_probs=75.5
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
.++|||+|||+++++++|+++|+.||.|..+.+..++ ++.++|||||+|.+.++|++|++ +++..|+|+.|+|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5799999999999999999999999999999999997 89999999999999999999998 799999999999999987
Q ss_pred C
Q 028651 177 N 177 (206)
Q Consensus 177 ~ 177 (206)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 166
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=1.1e-16 Score=116.49 Aligned_cols=76 Identities=21% Similarity=0.150 Sum_probs=68.3
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceE-EEEEEccHHHHHHHHHHhCCceeCC--eeEEEEEec
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGS-AEVVYARRSDAFAALKRYNNVLLDG--KPMKIEVVG 175 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~-afV~f~~~~~A~~Ai~~l~g~~i~g--~~i~V~~a~ 175 (206)
..|||+||++.+++++|+++|++||.|..|.|... .|| |||+|.+.++|+.|++.|||..|.| +.|+|.+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 45789999999999999999999999999998652 276 9999999999999999999999987 689999998
Q ss_pred CCCC
Q 028651 176 TNAE 179 (206)
Q Consensus 176 ~~~~ 179 (206)
+...
T Consensus 101 ~~~l 104 (124)
T 2e5i_A 101 PTRL 104 (124)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 7653
No 167
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=1.3e-16 Score=121.14 Aligned_cols=79 Identities=25% Similarity=0.406 Sum_probs=74.2
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeC---CeeEEEEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD---GKPMKIEV 173 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~---g~~i~V~~ 173 (206)
..++|||+|||+++++++|+++|+.||.|..|.++.++++.++|||||+|.+.++|++|++.|||..+. +++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 568999999999999999999999999999999999999999999999999999999999999998776 48999999
Q ss_pred ec
Q 028651 174 VG 175 (206)
Q Consensus 174 a~ 175 (206)
|.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 168
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=1.7e-16 Score=119.84 Aligned_cols=79 Identities=35% Similarity=0.616 Sum_probs=75.2
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCC--eeEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKIE 172 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g--~~i~V~ 172 (206)
...++|||.|||..+++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|++.||+..++| ++|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 456899999999999999999999999999999999998 89999999999999999999999999999988 999999
Q ss_pred Ee
Q 028651 173 VV 174 (206)
Q Consensus 173 ~a 174 (206)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 169
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.69 E-value=8.3e-17 Score=109.33 Aligned_cols=70 Identities=21% Similarity=0.464 Sum_probs=65.5
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhcc----C-------CeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeC
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEI----G-------ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~ 165 (206)
+.++|||+|||+++++++|+++|+.| | .|..+.+..+ +|||||+|.+.++|++|+ .||+..|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 46899999999999999999999999 8 8999988753 789999999999999999 99999999
Q ss_pred CeeEEEE
Q 028651 166 GKPMKIE 172 (206)
Q Consensus 166 g~~i~V~ 172 (206)
|+.|+|+
T Consensus 79 g~~l~V~ 85 (87)
T 2hzc_A 79 GQSLKIR 85 (87)
T ss_dssp TEECEEE
T ss_pred CeEEEEe
Confidence 9999986
No 170
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=9.9e-17 Score=110.08 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=63.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCce--eCCeeEEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL--LDGKPMKIEV 173 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~--i~g~~i~V~~ 173 (206)
.+.++|||+|||+++++++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|++ +++.. +.|+.|.|.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 45799999999999999999999999999999999875 78999999999999984 45544 5699999999
Q ss_pred ecCCC
Q 028651 174 VGTNA 178 (206)
Q Consensus 174 a~~~~ 178 (206)
+.++.
T Consensus 81 a~~k~ 85 (89)
T 3d2w_A 81 AEPKH 85 (89)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 88654
No 171
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=9.2e-17 Score=115.05 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=66.7
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-C---CCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N---GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~---g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 171 (206)
...++|||+|||+++++++|+++|++||.|. +.++.+. + |.++|||||+|.+.++|++||+.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 7777776 4 7999999999999999999999983 467777666
Q ss_pred EEec
Q 028651 172 EVVG 175 (206)
Q Consensus 172 ~~a~ 175 (206)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5544
No 172
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.69 E-value=1.4e-16 Score=115.59 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=70.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
.+.++|||+|| ++++++|+++|+.||.|..|.+. .++|||||+|.+.++|++|++.||+..|+|+.|+|.++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 46789999996 69999999999999999999986 467899999999999999999999999999999999998
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
+..
T Consensus 110 ~~~ 112 (121)
T 2bz2_A 110 KQP 112 (121)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.68 E-value=1.2e-16 Score=125.60 Aligned_cols=80 Identities=26% Similarity=0.409 Sum_probs=73.5
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
.++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++.||+..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 5899999999999999999999999999999999998 899999999999999999999999999999999999988765
Q ss_pred C
Q 028651 177 N 177 (206)
Q Consensus 177 ~ 177 (206)
.
T Consensus 108 ~ 108 (216)
T 2qfj_A 108 I 108 (216)
T ss_dssp C
T ss_pred c
Confidence 4
No 174
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.68 E-value=5.2e-16 Score=109.79 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=72.0
Q ss_pred CCCEEEEeCCCC-----CCcHHHHHHHHhccCCeEEEEEEECC--CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeE
Q 028651 97 VGTKLYVSNLHP-----GVTNDDIRELFSEIGELKRYAIHFDK--NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169 (206)
Q Consensus 97 ~~~~l~V~nLp~-----~~te~~L~~~F~~~G~v~~v~i~~~~--~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i 169 (206)
++++|+|.||.. +-++++|+++|++||.|.+|.|+.++ ++.++|||||+|.+.++|++|++.|||..++|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 578999999952 23689999999999999999999986 36889999999999999999999999999999999
Q ss_pred EEEEecC
Q 028651 170 KIEVVGT 176 (206)
Q Consensus 170 ~V~~a~~ 176 (206)
.|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999864
No 175
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=2.3e-16 Score=123.29 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=74.0
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~ 177 (206)
.++|||+|||+++++++|+++|+.||.|..|.|+.+.++.++|||||+|.+.++|++|++.++ ..|+|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 589999999999999999999999999999999999889999999999999999999998764 5999999999998764
No 176
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.68 E-value=2.8e-16 Score=118.24 Aligned_cols=78 Identities=26% Similarity=0.423 Sum_probs=73.4
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCee--EEEEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP--MKIEV 173 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~--i~V~~ 173 (206)
..++|||+|||+.+++++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|++|++.|||..++|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 46899999999999999999999999999999999998 8999999999999999999999999999999975 88877
Q ss_pred e
Q 028651 174 V 174 (206)
Q Consensus 174 a 174 (206)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 177
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.5e-17 Score=110.74 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=66.7
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
+.++|||+|||+++++++|+++|+.||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.++.|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 5799999999999999999999999999999998765 789999999999999865332 3556999999999987
Q ss_pred CCC
Q 028651 177 NAE 179 (206)
Q Consensus 177 ~~~ 179 (206)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=3.2e-16 Score=118.94 Aligned_cols=83 Identities=19% Similarity=0.368 Sum_probs=74.5
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CC--CCceEEEEEEccHHHHHHHHHHhCCceeC---CeeEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NG--RPSGSAEVVYARRSDAFAALKRYNNVLLD---GKPMK 170 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g--~~~G~afV~f~~~~~A~~Ai~~l~g~~i~---g~~i~ 170 (206)
..++|||+|||+++++++|+++|+.||.|..|.++.++ ++ .++|||||+|.+.++|++|++.||+..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998 44 79999999999999999999999998775 57888
Q ss_pred EEEecCCCC
Q 028651 171 IEVVGTNAE 179 (206)
Q Consensus 171 V~~a~~~~~ 179 (206)
+.++.....
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888776543
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=4.3e-16 Score=127.62 Aligned_cols=82 Identities=23% Similarity=0.434 Sum_probs=75.5
Q ss_pred CCCCCEEEEeCCCCCCcHHHHH----HHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 170 (206)
..+.++|||+|||+++++++|+ ++|+.||.|..|.+.. ++.++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 3568999999999999999966 8999999999998875 678999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 028651 171 IEVVGTNA 178 (206)
Q Consensus 171 V~~a~~~~ 178 (206)
|.|+....
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99997655
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=2.5e-16 Score=119.99 Aligned_cols=77 Identities=22% Similarity=0.432 Sum_probs=71.6
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
..++|||+|||+++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.||+..|+|+.|+|.|+.+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 56899999999999999999999999987766 55788999999999999999999999999999999999999987
Q ss_pred C
Q 028651 177 N 177 (206)
Q Consensus 177 ~ 177 (206)
+
T Consensus 174 k 174 (175)
T 1fje_B 174 K 174 (175)
T ss_dssp C
T ss_pred C
Confidence 5
No 181
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.65 E-value=2.8e-16 Score=126.36 Aligned_cols=80 Identities=19% Similarity=0.302 Sum_probs=71.4
Q ss_pred CCCCCEEEEeCCCCCC---------cHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCcee-
Q 028651 95 IEVGTKLYVSNLHPGV---------TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL- 164 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i- 164 (206)
....++|||+||+..+ ++++|+++|++||.|..|.|+. ++|||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 4567899999999998 7999999999999999999985 578999999999999999999999999
Q ss_pred -----------CCeeEEEEEecCCCC
Q 028651 165 -----------DGKPMKIEVVGTNAE 179 (206)
Q Consensus 165 -----------~g~~i~V~~a~~~~~ 179 (206)
.|+.|.|.||++++.
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999997653
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.65 E-value=9.2e-16 Score=125.79 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=79.4
Q ss_pred CCCCEEEEeCCCCCC-cHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGV-TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~-te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
...++|||.|||+++ ++++|+++|+.||.|..|.|..+.+|.++|+|||+|.+.++|.+|++.|||..|+|+.|.|.|+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC 261 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEe
Confidence 457899999999995 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 028651 175 GTNAE 179 (206)
Q Consensus 175 ~~~~~ 179 (206)
.+...
T Consensus 262 ~~~~~ 266 (284)
T 3smz_A 262 APGPP 266 (284)
T ss_dssp CSSSC
T ss_pred cCCCc
Confidence 87654
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.64 E-value=7.7e-16 Score=126.73 Aligned_cols=82 Identities=20% Similarity=0.341 Sum_probs=76.6
Q ss_pred CCCCCEEEEeCCCCC-CcHHHHHHHHhccCCeEEEEEEECCC--CCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEE
Q 028651 95 IEVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKN--GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~--g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 171 (206)
....++|||.|||++ +++++|+++|+.||.|..|.++.+.+ +.++|||||+|.+.++|.+|+ .||+..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 346789999999999 99999999999999999999999886 999999999999999999999 99999999999999
Q ss_pred EEecCC
Q 028651 172 EVVGTN 177 (206)
Q Consensus 172 ~~a~~~ 177 (206)
.|+.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999875
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=4.6e-16 Score=124.23 Aligned_cols=78 Identities=33% Similarity=0.448 Sum_probs=73.4
Q ss_pred CCCCEEEEeCCCC-CCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 96 EVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
.++++|||+|||+ ++++++|+++|+.||.|..|.++.++ +|||||+|.+.++|++|++.||+..|.|+.|.|.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4679999999999 99999999999999999999998874 689999999999999999999999999999999999
Q ss_pred cCC
Q 028651 175 GTN 177 (206)
Q Consensus 175 ~~~ 177 (206)
...
T Consensus 108 ~~~ 110 (229)
T 2adc_A 108 KHQ 110 (229)
T ss_dssp SCC
T ss_pred cCc
Confidence 865
No 185
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=3.7e-16 Score=117.94 Aligned_cols=79 Identities=24% Similarity=0.385 Sum_probs=72.9
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
++++|||+|||+++++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++. +..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 36899999999999999999999999999999999997 899999999999999999999985 678999999998876
Q ss_pred CC
Q 028651 176 TN 177 (206)
Q Consensus 176 ~~ 177 (206)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 43
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4e-15 Score=106.17 Aligned_cols=80 Identities=16% Similarity=0.388 Sum_probs=69.6
Q ss_pred CCCEEEEeCCCCCCc-----------HHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeC
Q 028651 97 VGTKLYVSNLHPGVT-----------NDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (206)
Q Consensus 97 ~~~~l~V~nLp~~~t-----------e~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~ 165 (206)
++++|+|.||..... +++|+++|++||.|..|.| .++. ++|||||+|.+.++|++|++.|||..|+
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~--~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH--PDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC--TTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC--CCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 578999999944332 5799999999999999965 5543 7899999999999999999999999999
Q ss_pred CeeEEEEEecCCCC
Q 028651 166 GKPMKIEVVGTNAE 179 (206)
Q Consensus 166 g~~i~V~~a~~~~~ 179 (206)
|+.|+|.++.+...
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999987554
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.63 E-value=4.5e-15 Score=121.63 Aligned_cols=82 Identities=21% Similarity=0.334 Sum_probs=78.1
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-CCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
..++|||+|||+++++++|+++|+.||.|..+.++.+. ++.++|||||+|.+.++|.+|++.||+..++|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 46899999999999999999999999999999999998 89999999999999999999999999999999999999998
Q ss_pred CCC
Q 028651 176 TNA 178 (206)
Q Consensus 176 ~~~ 178 (206)
+..
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 654
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=2.6e-15 Score=122.93 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=71.7
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeC-CeeEEEEE
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIEV 173 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~-g~~i~V~~ 173 (206)
..+.++|||+|||.++++++|+++|+.||.|..|.++.++ +|||||+|.+.++|++|++.||+..|+ |+.|+|+|
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 3457899999999999999999999999999999998653 589999999999999999999999999 99999999
Q ss_pred ec
Q 028651 174 VG 175 (206)
Q Consensus 174 a~ 175 (206)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=2.2e-15 Score=118.75 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=69.7
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCe--EEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCe----eE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGEL--KRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK----PM 169 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v--~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~----~i 169 (206)
.++++|||+|||+++++++|+++|+.||.| ..+++..+. +..+|||||+|.+.++|.+||..||+..|.|. ++
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 457899999999999999999999999999 889888776 45569999999999999999999999999887 57
Q ss_pred EEEEe
Q 028651 170 KIEVV 174 (206)
Q Consensus 170 ~V~~a 174 (206)
.|.|+
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77665
No 190
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=8.1e-16 Score=108.59 Aligned_cols=73 Identities=22% Similarity=0.385 Sum_probs=65.1
Q ss_pred EeCCCCCCcHHHHHHHH------------hccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEE
Q 028651 103 VSNLHPGVTNDDIRELF------------SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (206)
Q Consensus 103 V~nLp~~~te~~L~~~F------------~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 170 (206)
+.||++.+++++|+++| ++||.|..|.|+.+.++.++|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 55677777887777666 999999999999888888999999999999999999999999999999999
Q ss_pred EEEec
Q 028651 171 IEVVG 175 (206)
Q Consensus 171 V~~a~ 175 (206)
|.++.
T Consensus 100 v~~sp 104 (104)
T 1jmt_A 100 AELSP 104 (104)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99863
No 191
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.59 E-value=6.6e-15 Score=121.10 Aligned_cols=83 Identities=17% Similarity=0.253 Sum_probs=71.4
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccC-CeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEec
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~ 175 (206)
..++|||+|||+++++++|+++|+.|| .|..|.++.++.+.++|||||+|.+.++|++|++.||+..|+|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999998888899999999999999999999999999999999999998
Q ss_pred CCCC
Q 028651 176 TNAE 179 (206)
Q Consensus 176 ~~~~ 179 (206)
+...
T Consensus 196 ~~~~ 199 (292)
T 2ghp_A 196 PLEK 199 (292)
T ss_dssp CC--
T ss_pred CCcc
Confidence 6543
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=1.4e-15 Score=118.20 Aligned_cols=77 Identities=34% Similarity=0.466 Sum_probs=72.2
Q ss_pred CCEEEEeCCCC-CCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 028651 98 GTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 98 ~~~l~V~nLp~-~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~ 176 (206)
+++|||+|||+ ++++++|+++|+.||.|..|.++.++ +|||||+|.+.++|++|++.||+..+.|+.|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 68999999999 99999999999999999999998764 67999999999999999999999999999999999986
Q ss_pred CC
Q 028651 177 NA 178 (206)
Q Consensus 177 ~~ 178 (206)
..
T Consensus 79 ~~ 80 (198)
T 1qm9_A 79 QN 80 (198)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.59 E-value=5.6e-16 Score=118.07 Aligned_cols=83 Identities=18% Similarity=0.208 Sum_probs=71.5
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
..+.++|||+|||+++++++|+++|..||.+..+.+....++.++|||||+|.+.++|++|++ ||+..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 346799999999999999999999999987665333333367899999999999999999995 9999999999999999
Q ss_pred cCCC
Q 028651 175 GTNA 178 (206)
Q Consensus 175 ~~~~ 178 (206)
.+..
T Consensus 89 ~~~~ 92 (175)
T 1fje_B 89 KGRD 92 (175)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 8654
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.58 E-value=3.1e-15 Score=116.32 Aligned_cols=78 Identities=22% Similarity=0.320 Sum_probs=72.3
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccC-CeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeC-CeeEEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIEV 173 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~-g~~i~V~~ 173 (206)
.+.++|||+|||..+++++|+++|+.|| .|..|.+..+ .+|+|||+|.+.++|++|++.||+..++ |+.|+|.|
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 4579999999999999999999999999 9999998664 3689999999999999999999999999 99999999
Q ss_pred ecCC
Q 028651 174 VGTN 177 (206)
Q Consensus 174 a~~~ 177 (206)
++++
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9864
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.58 E-value=5.8e-15 Score=117.79 Aligned_cols=78 Identities=22% Similarity=0.320 Sum_probs=72.2
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccC-CeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeC-CeeEEEEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIEV 173 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~-g~~i~V~~ 173 (206)
.+.++|||+|||+++++++|+++|+.|| .|..|.++.+ .+|||||+|.+.++|++|++.||+..++ |+.|+|.|
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 4579999999999999999999999999 9999998653 4689999999999999999999999999 99999999
Q ss_pred ecCC
Q 028651 174 VGTN 177 (206)
Q Consensus 174 a~~~ 177 (206)
++++
T Consensus 225 a~~~ 228 (229)
T 2adc_A 225 SKST 228 (229)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 9864
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=6e-15 Score=119.99 Aligned_cols=77 Identities=23% Similarity=0.367 Sum_probs=71.5
Q ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEe
Q 028651 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (206)
Q Consensus 95 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a 174 (206)
....++|||+|||+++|+++|+++|+.||.|..|.+.. ++|||||+|.+.++|++|++.||+..|.|+.|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 34568999999999999999999999999999999864 4789999999999999999999999999999999998
Q ss_pred cC
Q 028651 175 GT 176 (206)
Q Consensus 175 ~~ 176 (206)
.+
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.58 E-value=9.9e-15 Score=103.15 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=70.3
Q ss_pred CCCEEEEeCC--CCCCc--------HHHHHHHHhccCCeEEEEEEECCC---CCCceEEEEEEccHHHHHHHHHHhCCce
Q 028651 97 VGTKLYVSNL--HPGVT--------NDDIRELFSEIGELKRYAIHFDKN---GRPSGSAEVVYARRSDAFAALKRYNNVL 163 (206)
Q Consensus 97 ~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~v~~v~i~~~~~---g~~~G~afV~f~~~~~A~~Ai~~l~g~~ 163 (206)
+++.|.|.|+ |..+. +++|++.|++||.|.+|.|+.+.. +.++|++||+|.+.++|++|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5789999998 43443 368999999999999999998873 3678999999999999999999999999
Q ss_pred eCCeeEEEEEecC
Q 028651 164 LDGKPMKIEVVGT 176 (206)
Q Consensus 164 i~g~~i~V~~a~~ 176 (206)
++|+.|.|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999864
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=1.5e-14 Score=117.60 Aligned_cols=82 Identities=29% Similarity=0.460 Sum_probs=75.0
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhC-CceeC---CeeEEEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN-NVLLD---GKPMKIE 172 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~-g~~i~---g~~i~V~ 172 (206)
+.++|||+|||+.+++++|+++|+.||.|..|.++.+.+|.++|||||+|.+.++|.+|++.|| +..+. +++|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 5689999999999999999999999999999999999999999999999999999999999995 45554 8999999
Q ss_pred EecCCC
Q 028651 173 VVGTNA 178 (206)
Q Consensus 173 ~a~~~~ 178 (206)
++....
T Consensus 175 ~~~~~~ 180 (261)
T 3sde_A 175 PMEQFD 180 (261)
T ss_dssp ECCCEE
T ss_pred eccccC
Confidence 987643
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.55 E-value=4.8e-14 Score=109.10 Aligned_cols=76 Identities=18% Similarity=0.404 Sum_probs=67.3
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhcc----C-------CeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeC
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEI----G-------ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~ 165 (206)
..++|||+|||+++++++|+++|+.| | .|..+.+. .++|||||+|.+.++|++|+ .||+..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 46899999999999999999999999 5 56666653 46899999999999999999 89999999
Q ss_pred CeeEEEEEecCCC
Q 028651 166 GKPMKIEVVGTNA 178 (206)
Q Consensus 166 g~~i~V~~a~~~~ 178 (206)
|+.|.|.++....
T Consensus 77 g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 77 GQSLKIRRPHDYQ 89 (198)
T ss_dssp TEEEEEECCCCCC
T ss_pred CceEEEeCCCCCC
Confidence 9999999987653
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.55 E-value=1.8e-14 Score=109.11 Aligned_cols=76 Identities=18% Similarity=0.375 Sum_probs=68.2
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhcc----C-------CeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeC
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEI----G-------ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~ 165 (206)
+.++|||+|||+++++++|+++|+.| | .|..+.+.. ++|||||+|.+.++|++|+ .||+..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 46899999999999999999999999 6 777777654 5789999999999999999 89999999
Q ss_pred CeeEEEEEecCCC
Q 028651 166 GKPMKIEVVGTNA 178 (206)
Q Consensus 166 g~~i~V~~a~~~~ 178 (206)
|+.|.|.++....
T Consensus 77 g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 77 GQSLKIRRPHDYQ 89 (172)
T ss_dssp TEECEEECCSSCC
T ss_pred CceeeecCCcccC
Confidence 9999999877543
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.54 E-value=4.6e-14 Score=101.75 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=70.2
Q ss_pred CCCEEEEeCCC--CCC---cHHHHHHHHhccCCeEEEEEEECCC-----CCCceEEEEEEccHHHHHHHHHHhCCceeCC
Q 028651 97 VGTKLYVSNLH--PGV---TNDDIRELFSEIGELKRYAIHFDKN-----GRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (206)
Q Consensus 97 ~~~~l~V~nLp--~~~---te~~L~~~F~~~G~v~~v~i~~~~~-----g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g 166 (206)
++++|+|.||- .++ .++||++.|++||.|.+|.|+.++. +.++|++||+|.+.++|++|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 57899999993 222 3689999999999999999998862 4577999999999999999999999999999
Q ss_pred eeEEEEEecC
Q 028651 167 KPMKIEVVGT 176 (206)
Q Consensus 167 ~~i~V~~a~~ 176 (206)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.5e-13 Score=96.20 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=64.3
Q ss_pred CCEEEEeCCC-------CCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEE
Q 028651 98 GTKLYVSNLH-------PGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (206)
Q Consensus 98 ~~~l~V~nLp-------~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 170 (206)
..+|.|.-.. ..+++++|+++|++||.|..|.|+ +.++|||||+|.+.++|+.|++.+++ +.++.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 3566665433 568999999999999999999998 36889999999999999999998544 6799999
Q ss_pred EEEecCCCCC
Q 028651 171 IEVVGTNAEI 180 (206)
Q Consensus 171 V~~a~~~~~~ 180 (206)
|.|+.++...
T Consensus 84 V~~a~~~~~~ 93 (100)
T 2d9o_A 84 ISWLEGQPQD 93 (100)
T ss_dssp EECSSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.46 E-value=1.6e-13 Score=115.80 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=65.6
Q ss_pred CCCCCEEEEeC--CCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeC---Ce--
Q 028651 95 IEVGTKLYVSN--LHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD---GK-- 167 (206)
Q Consensus 95 ~~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~---g~-- 167 (206)
..++.+|||+| |++.+|+++|+++|++||.|..|.+.. .+|||||+|.+.++|++|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 45678999999 588999999999999999999987753 5789999999999999999999998873 44
Q ss_pred eEEEEEec
Q 028651 168 PMKIEVVG 175 (206)
Q Consensus 168 ~i~V~~a~ 175 (206)
.|.|.++.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 57777764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.42 E-value=1.2e-12 Score=93.79 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=65.8
Q ss_pred CCCCEEEEeCC--CCCC--------cHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeC
Q 028651 96 EVGTKLYVSNL--HPGV--------TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (206)
Q Consensus 96 ~~~~~l~V~nL--p~~~--------te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~ 165 (206)
.+++.|.+.|+ +.+. .+++|++.|++||.|.+|.|..+. .+|++||+|.+.++|++|++.|||..++
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35788999998 2221 135789999999999999886542 5899999999999999999999999999
Q ss_pred CeeEEEEEecC
Q 028651 166 GKPMKIEVVGT 176 (206)
Q Consensus 166 g~~i~V~~a~~ 176 (206)
|+.|.|.++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999864
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=6e-12 Score=90.66 Aligned_cols=83 Identities=23% Similarity=0.290 Sum_probs=72.7
Q ss_pred CCCCCCCCCEEEEeCCCCC-CcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEcc-HHHHHHHHHHhC--CceeCC
Q 028651 91 GISGIEVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR-RSDAFAALKRYN--NVLLDG 166 (206)
Q Consensus 91 ~~~~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~-~~~A~~Ai~~l~--g~~i~g 166 (206)
+.....+++.|||+||+++ +++++|+++|+.||.|.+|.+..+.. .|||.|.+ .++|..|++.|| +..|++
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 3455678999999999999 99999999999999999999988754 69999999 899999999995 688999
Q ss_pred eeEEEEEecCCC
Q 028651 167 KPMKIEVVGTNA 178 (206)
Q Consensus 167 ~~i~V~~a~~~~ 178 (206)
..+++++.....
T Consensus 86 ~~~~~evL~Gee 97 (121)
T 1owx_A 86 KEVTWEVLEGEV 97 (121)
T ss_dssp SSEEEEECCHHH
T ss_pred cEEEEEECCCHH
Confidence 999998876433
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=8.7e-12 Score=84.81 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=62.8
Q ss_pred CCCEEEEeCCCC----CCcH----HHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCee
Q 028651 97 VGTKLYVSNLHP----GVTN----DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP 168 (206)
Q Consensus 97 ~~~~l~V~nLp~----~~te----~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 168 (206)
+..||+|..++. ++.. .+|.+.|++||.|..+++..+ .+||+|.+.++|.+|++ |||..++|+.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 467888887762 3333 578999999999999999876 38999999999999998 9999999999
Q ss_pred EEEEEecCC
Q 028651 169 MKIEVVGTN 177 (206)
Q Consensus 169 i~V~~a~~~ 177 (206)
|+|++++++
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999999864
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=2.3e-10 Score=78.18 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=62.1
Q ss_pred CCCCEEEEeCCCCC-----CcH----HHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC
Q 028651 96 EVGTKLYVSNLHPG-----VTN----DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (206)
Q Consensus 96 ~~~~~l~V~nLp~~-----~te----~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g 166 (206)
++..||+|..++.+ +.. .+|.+.|+.||.|..+++..+ -+||+|.+.++|.+||+ |||..++|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeeeCC
Confidence 35689999988743 222 468999999999999999887 49999999999999998 99999999
Q ss_pred eeEEEEEecC
Q 028651 167 KPMKIEVVGT 176 (206)
Q Consensus 167 ~~i~V~~a~~ 176 (206)
+.|+|.+..+
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999987543
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.06 E-value=1.5e-09 Score=85.81 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=67.2
Q ss_pred CCCCEEEEeCC-----CCCCcHHHHHHHHhccCCeEEEEEEECC-----CCCCceEEEEEEccHHHHHHHHHHhCCceeC
Q 028651 96 EVGTKLYVSNL-----HPGVTNDDIRELFSEIGELKRYAIHFDK-----NGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (206)
Q Consensus 96 ~~~~~l~V~nL-----p~~~te~~L~~~F~~~G~v~~v~i~~~~-----~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~ 165 (206)
.....+.+.|+ ...-.+++|.+.|++||.|..+.|+.+. ++.++|++||+|.+.++|++|++.|||..++
T Consensus 122 ~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~ 201 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 201 (222)
T ss_dssp CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred cccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC
Confidence 34455666665 2234567899999999999999998654 3488999999999999999999999999999
Q ss_pred CeeEEEEEecC
Q 028651 166 GKPMKIEVVGT 176 (206)
Q Consensus 166 g~~i~V~~a~~ 176 (206)
|+.|.|.++..
T Consensus 202 gr~i~~~~~~~ 212 (222)
T 3dxb_A 202 GRKVVAEVYDQ 212 (222)
T ss_dssp SSBCEEEECCH
T ss_pred CeEEEEEEcCH
Confidence 99999999763
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.54 E-value=6.1e-07 Score=62.61 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=65.9
Q ss_pred CCCEEEEeCCCCCCcHHHHHHHHhcc-----CCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEE
Q 028651 97 VGTKLYVSNLHPGVTNDDIRELFSEI-----GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te~~L~~~F~~~-----G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 171 (206)
..++|-+-|||.+++++.|+.++..+ |.+..+.+..|. +-|+|+|.+...|-+|.-.|+|.+|+|+.|++
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 46899999999999999999999999 999999998863 47999999999999999999999999999998
Q ss_pred EE
Q 028651 172 EV 173 (206)
Q Consensus 172 ~~ 173 (206)
.-
T Consensus 95 gT 96 (117)
T 2l9w_A 95 GT 96 (117)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.15 E-value=6e-06 Score=57.20 Aligned_cols=75 Identities=16% Similarity=0.137 Sum_probs=63.2
Q ss_pred CCCEEEEeCCCCCCcH-----HHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEE
Q 028651 97 VGTKLYVSNLHPGVTN-----DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (206)
Q Consensus 97 ~~~~l~V~nLp~~~te-----~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V 171 (206)
-.++|+|.||+.++-. +.++++|..|+++........ -.-..|.|.+.++|.+|-..||+..+.|+.|+|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3588999999886632 567899999998888766653 336789999999999999999999999999999
Q ss_pred EEecC
Q 028651 172 EVVGT 176 (206)
Q Consensus 172 ~~a~~ 176 (206)
.++.+
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99874
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=8e-05 Score=51.36 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=60.9
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhc-----cCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEE
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSE-----IGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~-----~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~ 170 (206)
....+|.|.|||+.+.++.|.-+|+. -|+|..+.... +-|+|+|.+.+.|++.++. ..+.|++..|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 35689999999999999999999976 15888887753 4899999999999999876 56889999999
Q ss_pred EEEecC
Q 028651 171 IEVVGT 176 (206)
Q Consensus 171 V~~a~~ 176 (206)
|.-..+
T Consensus 78 V~P~~~ 83 (104)
T 2dhx_A 78 LRPAPP 83 (104)
T ss_dssp EEECCC
T ss_pred EEcCCC
Confidence 966544
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.03 E-value=7.3e-05 Score=50.72 Aligned_cols=78 Identities=14% Similarity=0.277 Sum_probs=62.2
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-C--CCCceEEEEEEccHHHHHHHHHHhCCceeCCe-----eEE
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N--GRPSGSAEVVYARRSDAFAALKRYNNVLLDGK-----PMK 170 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~--g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~-----~i~ 170 (206)
++|.|.+||+++||+++.+.+.....+.....+..+ + -....-|||.|.+.+++..-.+.++|..+-+. ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 589999999999999999999988887777766655 2 22446899999999999999999999887332 345
Q ss_pred EEEecC
Q 028651 171 IEVVGT 176 (206)
Q Consensus 171 V~~a~~ 176 (206)
|++|.-
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 666653
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.78 E-value=5.8e-05 Score=53.60 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=58.4
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCC-eeEEEEEe
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG-KPMKIEVV 174 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g-~~i~V~~a 174 (206)
...+.|.|-+.|+.. -..|..+|++||.|.+.... . ...+..|.|.++.+|++|+.. ||..|++ -.|-|...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~--~---~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS--N---TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC--S---SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC--C---CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 346889999999885 56678899999999987762 1 223999999999999999987 9999985 56777665
Q ss_pred c
Q 028651 175 G 175 (206)
Q Consensus 175 ~ 175 (206)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.48 E-value=0.00057 Score=46.61 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=44.5
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHh
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 159 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l 159 (206)
...++| +.|.++...||.++|+.||.| .|..+.|- .|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC------eEEEEecCHHHHHHHHHhc
Confidence 455666 999999999999999999843 45555542 8999999999999999876
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.27 E-value=0.00048 Score=47.07 Aligned_cols=78 Identities=13% Similarity=0.253 Sum_probs=56.0
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECC-C-C-CCceEEEEEEccHHHHHHHHHHhCCceeCCe-----eE
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N-G-RPSGSAEVVYARRSDAFAALKRYNNVLLDGK-----PM 169 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~-~-g-~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~-----~i 169 (206)
+-+|.|..||+++||+++.+.+..+-.+.....+..+ + + ..-.-|||.|.+.++...-.+.++|..+-+. +.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 5689999999999999998888766454333322222 1 1 1235789999999999999999999886332 45
Q ss_pred EEEEec
Q 028651 170 KIEVVG 175 (206)
Q Consensus 170 ~V~~a~ 175 (206)
.|++|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566664
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.24 E-value=0.00044 Score=47.27 Aligned_cols=54 Identities=22% Similarity=0.178 Sum_probs=45.1
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhC
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~ 160 (206)
..++| +.|.++...||.++|+.|| -..|..+.|- .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 45566 9999999999999999998 4456666552 89999999999999999764
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.75 E-value=0.0014 Score=48.20 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=27.8
Q ss_pred EEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCc
Q 028651 128 YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV 162 (206)
Q Consensus 128 v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~ 162 (206)
+.|..+.. .++||+||+|.+.++|++|++.+++.
T Consensus 3 ~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 3 YKLILNGK-TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEecCc-cccchhHHHHHHHHhHHHHHHhhccc
Confidence 45555553 58999999999999999999988763
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.61 E-value=0.0051 Score=44.20 Aligned_cols=77 Identities=14% Similarity=0.212 Sum_probs=55.8
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEE-EEEEE------------CC-CC-CCceEEEEEEccHHHHHHHHHHhCCc
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHF------------DK-NG-RPSGSAEVVYARRSDAFAALKRYNNV 162 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~-v~i~~------------~~-~g-~~~G~afV~f~~~~~A~~Ai~~l~g~ 162 (206)
.+.|.|-+.|++.+. .+.+.|++||.|.+ +.+.. .+ .. ....+..|+|+++.+|.+||.. ||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 467888899776654 46678999999876 21110 00 00 1235889999999999999987 999
Q ss_pred eeCCeeEEEEEecC
Q 028651 163 LLDGKPMKIEVVGT 176 (206)
Q Consensus 163 ~i~g~~i~V~~a~~ 176 (206)
.|+|..|-|....+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888877654
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.42 E-value=0.002 Score=56.05 Aligned_cols=56 Identities=7% Similarity=0.067 Sum_probs=42.4
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHH
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~ 158 (206)
.++|+|. .|..+++.+|.++|++||+|..+.+..+. .-||.|+|.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHhc
Confidence 4889997 79999999999999999999999877542 25999999999988877654
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.12 E-value=0.0041 Score=45.36 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=36.4
Q ss_pred CCCceEEEEEEccHHHHHHHHHHh-CCceeCCeeEEEEEecC
Q 028651 136 GRPSGSAEVVYARRSDAFAALKRY-NNVLLDGKPMKIEVVGT 176 (206)
Q Consensus 136 g~~~G~afV~f~~~~~A~~Ai~~l-~g~~i~g~~i~V~~a~~ 176 (206)
...+|+++|+|.+.++|++|++.| |+..++| .|.+.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 357899999999999999999999 9999999 999988765
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.24 E-value=0.62 Score=40.92 Aligned_cols=55 Identities=22% Similarity=0.232 Sum_probs=43.7
Q ss_pred CCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhC
Q 028651 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (206)
Q Consensus 98 ~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~ 160 (206)
...++|+ +|..+...+|.++|+.||.+ .|..+.+ -.|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 4556665 89999999999999999843 4444332 279999999999999999885
No 222
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=90.30 E-value=0.071 Score=37.64 Aligned_cols=8 Identities=25% Similarity=0.563 Sum_probs=4.5
Q ss_pred CHHHHHhh
Q 028651 8 SLDDIIKS 15 (206)
Q Consensus 8 sld~ii~~ 15 (206)
.+|.++.+
T Consensus 75 ~~d~~l~~ 82 (119)
T 1b34_A 75 PLDTLLVD 82 (119)
T ss_dssp CHHHHTC-
T ss_pred ccchhHhh
Confidence 56666654
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=82.06 E-value=3.1 Score=26.12 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=42.6
Q ss_pred EEEEeC-CCCCCcHHHHHHHHhccCC-----eEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEE
Q 028651 100 KLYVSN-LHPGVTNDDIRELFSEIGE-----LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (206)
Q Consensus 100 ~l~V~n-Lp~~~te~~L~~~F~~~G~-----v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~ 173 (206)
++||.. --..+...+|..++..-+. |-.+.+..+ |.||+-.. +.+..+++.|++..+.|+.+.|+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEE
Confidence 455531 1344667788888875443 455666433 88998875 478889999999999999999987
Q ss_pred ec
Q 028651 174 VG 175 (206)
Q Consensus 174 a~ 175 (206)
+.
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=72.58 E-value=19 Score=26.81 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=38.8
Q ss_pred CEEEEeCCCC-C--------CcHHHHHHHH--hccCCeEEEEEEECCCCCCceEEEEEEcc-HHHHHHHHH
Q 028651 99 TKLYVSNLHP-G--------VTNDDIRELF--SEIGELKRYAIHFDKNGRPSGSAEVVYAR-RSDAFAALK 157 (206)
Q Consensus 99 ~~l~V~nLp~-~--------~te~~L~~~F--~~~G~v~~v~i~~~~~g~~~G~afV~f~~-~~~A~~Ai~ 157 (206)
-++.|-|+|. . ....+|.+.| +.|.++. |...+...| +.|+++|.|.+ ......|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChHHHHHHHH
Confidence 4567778876 2 3447899977 8997655 666676654 67899999974 444455544
No 225
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=68.23 E-value=23 Score=23.43 Aligned_cols=57 Identities=11% Similarity=0.163 Sum_probs=45.0
Q ss_pred CCCCEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHh
Q 028651 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 159 (206)
Q Consensus 96 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l 159 (206)
...+-|.|-|+|..+-..++.-.....|---.|..+ .|.|.+.|.+.++..-|+..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHH
Confidence 467889999999999988887666666654455443 368999999999999998876
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=58.55 E-value=27 Score=20.90 Aligned_cols=55 Identities=11% Similarity=0.015 Sum_probs=43.4
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHh
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 159 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l 159 (206)
.++.|.++.-.--...|+..+.. ..|..+.+.. ..+.+.|+|.+.++...+|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~-----~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL-----NEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS-----SEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc-----cCCEEEEEECCHHHHHHHHHHc
Confidence 57889999888788889999988 8888888765 3457888888667777788763
No 227
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=37.24 E-value=84 Score=20.35 Aligned_cols=34 Identities=15% Similarity=0.020 Sum_probs=26.1
Q ss_pred eEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCc
Q 028651 125 LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV 162 (206)
Q Consensus 125 v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~ 162 (206)
|..+.++. ...||.||++...++...+++...+.
T Consensus 40 i~~v~vP~----~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASE----SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECT----TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEec----ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 55555543 27899999999998888888877764
No 228
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=37.05 E-value=60 Score=18.66 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=40.5
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEc---cHHHHHHHHHH
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA---RRSDAFAALKR 158 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~---~~~~A~~Ai~~ 158 (206)
.++.|.++.-.--...+...+.....|..+.+... .+.+.|+|. +.++..++++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA-----LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCHHHHHHHHHH
Confidence 46788888877677889999998888888888664 346778874 34566666665
No 229
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=35.98 E-value=70 Score=21.69 Aligned_cols=47 Identities=13% Similarity=0.173 Sum_probs=28.7
Q ss_pred CCCcHHHHHHHHhc-cC---CeEEEEEEECC--CCCCceEEEEEEccHHHHHHH
Q 028651 108 PGVTNDDIRELFSE-IG---ELKRYAIHFDK--NGRPSGSAEVVYARRSDAFAA 155 (206)
Q Consensus 108 ~~~te~~L~~~F~~-~G---~v~~v~i~~~~--~g~~~G~afV~f~~~~~A~~A 155 (206)
.+++..+|++-+.. |+ .+..|.=+... .|++.|||.| |++.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45677888777653 43 23344444444 4667788865 7777777653
No 230
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=34.59 E-value=70 Score=18.71 Aligned_cols=56 Identities=9% Similarity=0.219 Sum_probs=42.3
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEc----cHHHHHHHHHHh
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA----RRSDAFAALKRY 159 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~----~~~~A~~Ai~~l 159 (206)
.++.|.++.-.--...++..+.....|..+.+... .+.+.|+|. +.++...+++.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL-----QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG-----GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46788888777667789999998888888887663 347888885 456777777764
No 231
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=34.15 E-value=57 Score=21.87 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=28.0
Q ss_pred CCCcHHHHHHHHhc-cC---CeEEEEEEECC--CCCCceEEEEEEccHHHHHHH
Q 028651 108 PGVTNDDIRELFSE-IG---ELKRYAIHFDK--NGRPSGSAEVVYARRSDAFAA 155 (206)
Q Consensus 108 ~~~te~~L~~~F~~-~G---~v~~v~i~~~~--~g~~~G~afV~f~~~~~A~~A 155 (206)
.+++..+|++.+.+ |+ .+..|.=+... .|++.|||.| |++.+.|.+-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56777888877753 43 33344333333 4567788865 6777666554
No 232
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=33.66 E-value=67 Score=21.57 Aligned_cols=46 Identities=9% Similarity=0.080 Sum_probs=28.0
Q ss_pred CCCcHHHHHHHHhc-cC---CeEEEEEEECC--CCCCceEEEEEEccHHHHHH
Q 028651 108 PGVTNDDIRELFSE-IG---ELKRYAIHFDK--NGRPSGSAEVVYARRSDAFA 154 (206)
Q Consensus 108 ~~~te~~L~~~F~~-~G---~v~~v~i~~~~--~g~~~G~afV~f~~~~~A~~ 154 (206)
.+++..+|++-+.+ |+ .+..|.=+... .|++.|||.| |++.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56777888777653 33 33344333334 4667788865 777777655
No 233
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=31.30 E-value=97 Score=20.80 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=26.9
Q ss_pred CeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCce
Q 028651 124 ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL 163 (206)
Q Consensus 124 ~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~ 163 (206)
.|.++....+ .+||-|||=.+..+...|++.+.+..
T Consensus 40 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEH----VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTT----CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCC----CceEEEEEeCCHHHHHHHHhccccee
Confidence 3566655432 68999999999999999987765543
No 234
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=29.69 E-value=4 Score=34.98 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=11.2
Q ss_pred HHHHHhccCCeEEE
Q 028651 115 IRELFSEIGELKRY 128 (206)
Q Consensus 115 L~~~F~~~G~v~~v 128 (206)
|.++|.++++|..|
T Consensus 9 L~~lF~p~pPl~~~ 22 (437)
T 3pgw_S 9 LLALFAPRDPIPYL 22 (437)
T ss_pred HHHhcCCCCCCcCC
Confidence 67888888888776
No 235
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=29.59 E-value=65 Score=25.36 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=23.4
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEE
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRY 128 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v 128 (206)
..+.|+|||+.++..-|..++.. ..+...
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 56789999999999999999876 555443
No 236
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=27.64 E-value=8.2 Score=27.90 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=16.1
Q ss_pred HHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEc
Q 028651 113 DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA 147 (206)
Q Consensus 113 ~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~ 147 (206)
+|+.++|...|.|+.+. . .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn---~----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN---V----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE---T----TTTEEEEEEE
T ss_pred CcccccccceeEEEEEE---C----CCCeeEEeeC
Confidence 45556666666666543 2 5789999875
No 237
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=25.80 E-value=41 Score=26.66 Aligned_cols=31 Identities=13% Similarity=0.016 Sum_probs=23.9
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEE
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYA 129 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~ 129 (206)
..+.|+|||+.++..-|..++.....+..+.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~ 145 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQH 145 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEE
Confidence 4678999999999999999987544444443
No 238
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=25.38 E-value=1.6e+02 Score=19.76 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=46.0
Q ss_pred eCCCCCCcHHHHHHHH-hccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 028651 104 SNLHPGVTNDDIRELF-SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (206)
Q Consensus 104 ~nLp~~~te~~L~~~F-~~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~i~g~~i~V~~a~~~~ 178 (206)
-.++.-+.-+||.... ..||.-..+....+ -..|-..+-++..+||+.|+-. ..-+.|+|-+..++.
T Consensus 22 i~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~-------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~~ 89 (103)
T 2cu1_A 22 LQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN-------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVINGS 89 (103)
T ss_dssp EEEESSCCHHHHHHHHHHHHSSCEEEEECSS-------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECCC
T ss_pred EeccCCccHHHHHHHHHHHhCCeeeEEEecc-------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCCC
Confidence 3456677878877665 56887666665422 3567888999999999998654 444566776665543
No 239
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=24.28 E-value=1.1e+02 Score=21.98 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=28.6
Q ss_pred CCCcHHHHHHHHhc-cCC---eEEEEEEECC--CCCCceEEEEEEccHHHHHHH
Q 028651 108 PGVTNDDIRELFSE-IGE---LKRYAIHFDK--NGRPSGSAEVVYARRSDAFAA 155 (206)
Q Consensus 108 ~~~te~~L~~~F~~-~G~---v~~v~i~~~~--~g~~~G~afV~f~~~~~A~~A 155 (206)
.+++..+|++-+.. |+. +..|.=+... .|.+.|||.| |++.+.|.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 46778888877754 442 3333333333 4567788876 6777776653
No 240
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=23.75 E-value=81 Score=24.41 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=20.1
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhcc
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEI 122 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~ 122 (206)
..+.|+|||+.++...|..++...
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~ 114 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYT 114 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTG
T ss_pred ceEEEECCCCCccHHHHHHHHhcC
Confidence 468899999999999888888653
No 241
>2i3t_B Spindle assembly checkpoint component; WD40 protein, beta propeller, mitotic spindle checkpoint, cell cycle; 2.80A {Saccharomyces cerevisiae}
Probab=23.69 E-value=32 Score=20.22 Aligned_cols=12 Identities=17% Similarity=0.631 Sum_probs=9.4
Q ss_pred CCCCCCHHHHHh
Q 028651 3 THVDMSLDDIIK 14 (206)
Q Consensus 3 ~~~~~sld~ii~ 14 (206)
..+|+||+||.+
T Consensus 23 ~~~E~sfeEllA 34 (54)
T 2i3t_B 23 GRLEFSLEEVLA 34 (54)
T ss_dssp --CBCCHHHHHH
T ss_pred ccceeeHHHHHH
Confidence 357999999998
No 242
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=22.13 E-value=59 Score=21.67 Aligned_cols=46 Identities=20% Similarity=0.282 Sum_probs=23.8
Q ss_pred CCCcHHHHHHHHhc-cCC---eEEEEEEECC--CCCCceEEEEEEccHHHHHH
Q 028651 108 PGVTNDDIRELFSE-IGE---LKRYAIHFDK--NGRPSGSAEVVYARRSDAFA 154 (206)
Q Consensus 108 ~~~te~~L~~~F~~-~G~---v~~v~i~~~~--~g~~~G~afV~f~~~~~A~~ 154 (206)
.+++..+|++-+.. |+. +..|.=+... .|++.|||.| |++.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677787776643 332 2222222222 3556777765 555555443
No 243
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=22.12 E-value=1.7e+02 Score=18.99 Aligned_cols=62 Identities=8% Similarity=-0.103 Sum_probs=37.3
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEE-EEEECC-CCCCceEEEEEEc--cHHHHHHHHHHhC
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRY-AIHFDK-NGRPSGSAEVVYA--RRSDAFAALKRYN 160 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v-~i~~~~-~g~~~G~afV~f~--~~~~A~~Ai~~l~ 160 (206)
..|.|.=....+.+..|.++...|+--..+ .-..+. .+...|.-+|++. +.++.++|++.|.
T Consensus 21 ~lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~ 86 (98)
T 3ced_A 21 YIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELI 86 (98)
T ss_dssp EEEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHH
Confidence 344444334456666777777778642222 111122 4556788889987 4667788888774
No 244
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.04 E-value=1.2e+02 Score=19.59 Aligned_cols=25 Identities=8% Similarity=0.162 Sum_probs=20.0
Q ss_pred CeEEEEEEECC-CCCCceEEEEEEcc
Q 028651 124 ELKRYAIHFDK-NGRPSGSAEVVYAR 148 (206)
Q Consensus 124 ~v~~v~i~~~~-~g~~~G~afV~f~~ 148 (206)
+|.+|++..-. .++.++||-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 56778776666 78889999999975
No 245
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=22.02 E-value=51 Score=29.57 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=38.3
Q ss_pred CCCCCcHHHHHHHHh----ccCCeEEEEEEECCCCCCceEEEEEEccHHHHHHHHHHh
Q 028651 106 LHPGVTNDDIRELFS----EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 159 (206)
Q Consensus 106 Lp~~~te~~L~~~F~----~~G~v~~v~i~~~~~g~~~G~afV~f~~~~~A~~Ai~~l 159 (206)
.+.+.+--||..+|- .+|-|.++.+...+--....++++.|.+.++|..++..+
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 344444457888883 567788877655544445668899999999999888765
No 246
>2gpv_G Nuclear receptor corepressor 2; estrogen related receptor, ERR, ERRG, ESRRG, nuclear recepto steroid receptor, SMRT, tamoxifen, transcription; HET: OHT; 2.85A {Homo sapiens}
Probab=21.90 E-value=41 Score=16.34 Aligned_cols=9 Identities=44% Similarity=0.888 Sum_probs=7.3
Q ss_pred CCCHHHHHh
Q 028651 6 DMSLDDIIK 14 (206)
Q Consensus 6 ~~sld~ii~ 14 (206)
+|.|++||.
T Consensus 2 n~gleaiir 10 (26)
T 2gpv_G 2 NMGLEAIIR 10 (26)
T ss_pred ccCHHHHHH
Confidence 678888887
No 247
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=21.53 E-value=1.5e+02 Score=18.22 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=39.9
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEc----cHHHHHHHHHHh
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA----RRSDAFAALKRY 159 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~----~~~~A~~Ai~~l 159 (206)
.++.|.++.-..-...|...+.....|..+.+... .+.+.|+|. +.+....+|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~-----~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE-----NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT-----TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc-----CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 46778888665556778888988878888887654 347888885 345566677664
No 248
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=21.17 E-value=1.2e+02 Score=16.99 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=37.8
Q ss_pred CEEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEcc----HHHHHHHHHHh
Q 028651 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (206)
Q Consensus 99 ~~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~~----~~~A~~Ai~~l 159 (206)
.++.|.++.-..-...+...+.....|..+.+... .+.+.|.|.. .+....+++.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA-----NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT-----TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc-----CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 45778887665555678888888777777777653 3477888863 45556667664
No 249
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=20.91 E-value=43 Score=26.11 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=22.7
Q ss_pred EEEEeCCCCCCcHHHHHHHHhccCCeEEE
Q 028651 100 KLYVSNLHPGVTNDDIRELFSEIGELKRY 128 (206)
Q Consensus 100 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v 128 (206)
-..|+|||+.++...|..++.....+..+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~ 126 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDM 126 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheE
Confidence 34899999999999999999865544443
No 250
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=20.50 E-value=2.3e+02 Score=19.95 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=28.6
Q ss_pred CCCcHHHHHHHHh-ccCC---eEEEEEEECC--CCCCceEEEEEEccHHHHHH
Q 028651 108 PGVTNDDIRELFS-EIGE---LKRYAIHFDK--NGRPSGSAEVVYARRSDAFA 154 (206)
Q Consensus 108 ~~~te~~L~~~F~-~~G~---v~~v~i~~~~--~g~~~G~afV~f~~~~~A~~ 154 (206)
.+++..+|++-+. .|+. +..|.=+... .|.+.|||.| |++.+.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 4578899998885 4542 2333333333 4567778876 777777665
No 251
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=20.36 E-value=1.2e+02 Score=16.59 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=36.7
Q ss_pred EEEEeCCCCCCcHHHHHHHHhccCCeEEEEEEECCCCCCceEEEEEEc---cHHHHHHHHHHh
Q 028651 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA---RRSDAFAALKRY 159 (206)
Q Consensus 100 ~l~V~nLp~~~te~~L~~~F~~~G~v~~v~i~~~~~g~~~G~afV~f~---~~~~A~~Ai~~l 159 (206)
++.|.++.-..-...++..+.....|..+.+... .+.+.|+|. +.+....+++.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE-----KKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT-----TTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC-----CCEEEEEECCCCCHHHHHHHHHHc
Confidence 4566677665556778888888877888877653 346778875 345555666553
Done!