BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028652
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X5M|A Chain A, Solution Structure Of The Core Domain Of Calcyclin Binding
Protein; Siah-Interacting Protein (Sip)
Length = 127
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 38 GPAPVPTPAKVSSTPALNYITLGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSF 94
G + V P T + + ++ WDQ ++ VKIYI+L GV Q + ++ F + SF
Sbjct: 4 GSSGVVAPITTGYT-----VKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSF 58
Query: 95 DVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFK 137
D+ ++ GK+Y L + I E S VK V+I+ K
Sbjct: 59 DLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRK 101
>pdb|2JTT|C Chain C, Solution Structure Of Calcium Loaded S100a6 Bound To C-
Terminal Siah-1 Interacting Protein
pdb|2JTT|D Chain D, Solution Structure Of Calcium Loaded S100a6 Bound To C-
Terminal Siah-1 Interacting Protein
Length = 35
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 26/29 (89%)
Query: 166 GIMDLMKNMYEEGDDEMKRTIAKAWTDAR 194
G+M+++K +YE+GDD+MKRTI KAW ++R
Sbjct: 7 GLMNVLKKIYEDGDDDMKRTINKAWVESR 35
>pdb|2XCM|C Chain C, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2
Domain
pdb|2XCM|D Chain D, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2
Domain
Length = 92
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 64 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSK 123
+ Q E+V + + +G+ + + +F + V +V G++ + PRL +I+P+K K
Sbjct: 7 YYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVI-EVPGEDAYYLQPRLFGKIIPDKCK 65
Query: 124 VLVKPTRVVIMLFKASKGNWLDLQY 148
V T++ I L KA W L++
Sbjct: 66 YEVLSTKIEICLAKADIITWASLEH 90
>pdb|2JKI|S Chain S, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain
pdb|2JKI|T Chain T, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain
pdb|2JKI|U Chain U, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain
Length = 90
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 64 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSK 123
+ Q E+V + + +G+ + + +F + V +V G++ + PRL +I+P+K K
Sbjct: 6 YYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVI-EVPGEDAYYLQPRLFGKIIPDKCK 64
Query: 124 VLVKPTRVVIMLFKASKGNWLDLQY 148
V T++ I L KA W L++
Sbjct: 65 YEVLSTKIEICLAKADIITWASLEH 89
>pdb|1POI|A Chain A, Crystal Structure Of Glutaconate Coenzyme A-transferase
From Acidaminococcus Fermentans To 2.55 Angstoms
Resolution
pdb|1POI|C Chain C, Crystal Structure Of Glutaconate Coenzyme A-transferase
From Acidaminococcus Fermentans To 2.55 Angstoms
Resolution
Length = 317
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 64 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVP 119
+D DN +K+Y + Q+ +A K+W FD+K HD + N + +N ++VP
Sbjct: 253 YDYDNPFLKVYDKVSKT-QEDFDAFCKEWVFDLKDHD-EYLNKLGATRLINLKVVP 306
>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain
Length = 114
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 62 FSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEK 121
+ W Q +V I + ++ V ++ + EF + G++Y L+ I+PE+
Sbjct: 12 YDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLH-PIIPEQ 70
Query: 122 SKVLVKPTRVVIMLFKASKGNWLDLQYKED 151
S V T++ I L K W L+ + D
Sbjct: 71 STFKVLSTKIEIKLKKPEAVRWEKLEGQGD 100
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 2 LSKPRLIDFVNIPLVASVLPLIKYSLTSILQLSKEEGPAPVPTPAKVSSTPALNYITLGS 61
L PR + V I A++ PLI+ L S +L GP + TP + S G
Sbjct: 211 LELPR-ANAVAINSFATIHPLIENELNSKFKLLLNVGPFNLTTPQRKVSDEH------GC 263
Query: 62 FSW-DQDNEKVKIYISLEGVV 81
W DQ +YIS VV
Sbjct: 264 LEWLDQHENSSVVYISFGSVV 284
>pdb|1W8X|M Chain M, Structural Analysis Of Prd1
Length = 83
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 38 GPAPVPTPAKVSSTPALNYITLGSFSWDQDNEKVKIYI 75
GP P+P PA + P LNY G + Q + ++
Sbjct: 11 GPVPIPGPAPTETMPLLNYRVEGRIAGIQQARQFMPFL 48
>pdb|1O7D|E Chain E, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 126
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 2 LSKPRLIDFVNIPLVASVLPLIKYSLT--------SILQLSKEEGPAPVPTPAK-VSSTP 52
LS P +D N+ ++ L + +L S LQ + + GP P P+P++ VS+T
Sbjct: 47 LSSPVTLDLTNLFSAFTITNLRETTLAANQLLAYASRLQWTTDTGPTPHPSPSRPVSATI 106
Query: 53 ALNYIT----LGSFSWDQDN 68
L + L S W++D
Sbjct: 107 TLQPMEIRTFLASVQWEEDG 126
>pdb|3TX3|A Chain A, Cysz, A Putative Sulfate Permease
pdb|3TX3|B Chain B, Cysz, A Putative Sulfate Permease
Length = 249
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 80 VVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVL 125
V+ + F W +++ D N++ + PR+ E+ ++SK L
Sbjct: 163 VIGQVLWYIFVCWMMSIQYLDYPFDNHKLSFPRMRSELHQQRSKTL 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,341,372
Number of Sequences: 62578
Number of extensions: 257880
Number of successful extensions: 508
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 12
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)