Query 028652
Match_columns 206
No_of_seqs 278 out of 937
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 14:52:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3260 Calcyclin-binding prot 100.0 9.5E-50 2.1E-54 320.9 13.4 198 5-205 13-224 (224)
2 PLN03088 SGT1, suppressor of 100.0 5.8E-38 1.3E-42 281.0 15.9 143 56-199 153-330 (356)
3 KOG1309 Suppressor of G2 allel 100.0 2E-36 4.3E-41 243.7 11.3 139 60-199 4-172 (196)
4 cd06468 p23_CacyBP p23_like do 99.9 3.1E-22 6.7E-27 146.5 10.7 89 59-147 1-92 (92)
5 cd06488 p23_melusin_like p23_l 99.9 3.9E-22 8.4E-27 145.3 10.6 87 60-147 1-87 (87)
6 COG5091 SGT1 Suppressor of G2 99.9 2.8E-22 6.1E-27 171.6 7.5 141 59-199 176-344 (368)
7 cd06489 p23_CS_hSgt1_like p23_ 99.9 2E-21 4.4E-26 140.2 9.4 84 63-147 1-84 (84)
8 cd06465 p23_hB-ind1_like p23_l 99.9 4.8E-21 1E-25 144.5 11.8 98 60-160 1-103 (108)
9 cd00237 p23 p23 binds heat sho 99.8 6.5E-20 1.4E-24 138.5 11.7 99 60-161 2-104 (106)
10 cd06466 p23_CS_SGT1_like p23_l 99.8 1.4E-19 3.1E-24 129.6 9.6 84 63-147 1-84 (84)
11 cd06493 p23_NUDCD1_like p23_NU 99.7 7.8E-18 1.7E-22 122.0 9.4 82 62-147 1-85 (85)
12 PF05002 SGS: SGS domain ; In 99.7 4.6E-19 1E-23 127.4 2.2 57 141-199 2-58 (82)
13 PF04969 CS: CS domain; Inter 99.7 2.1E-17 4.6E-22 115.9 10.0 77 60-137 1-79 (79)
14 cd06463 p23_like Proteins cont 99.7 3.3E-17 7.1E-22 115.8 9.9 83 64-147 1-84 (84)
15 cd06467 p23_NUDC_like p23_like 99.7 4.4E-17 9.5E-22 117.1 9.6 82 62-147 1-85 (85)
16 cd06469 p23_DYX1C1_like p23_li 99.7 4.9E-17 1.1E-21 115.1 9.3 78 64-147 1-78 (78)
17 cd06490 p23_NCB5OR p23_like do 99.7 1.5E-16 3.2E-21 116.0 9.9 83 62-147 1-87 (87)
18 cd06494 p23_NUDCD2_like p23-li 99.6 1.2E-15 2.6E-20 112.7 10.1 84 59-147 5-93 (93)
19 cd06495 p23_NUDCD3_like p23-li 99.6 2.6E-15 5.7E-20 112.7 10.7 90 60-150 5-97 (102)
20 cd06492 p23_mNUDC_like p23-lik 99.6 7E-15 1.5E-19 107.3 9.2 82 62-147 1-87 (87)
21 KOG3158 HSP90 co-chaperone p23 99.5 7.9E-15 1.7E-19 118.1 6.6 88 60-150 8-97 (180)
22 KOG2265 Nuclear distribution p 99.5 2.4E-14 5.1E-19 115.6 9.2 126 58-198 17-147 (179)
23 KOG1667 Zn2+-binding protein M 99.3 3.6E-12 7.8E-17 108.4 8.4 93 57-150 212-305 (320)
24 cd00298 ACD_sHsps_p23-like Thi 99.2 9.2E-11 2E-15 80.6 7.5 73 64-137 1-80 (80)
25 PF09032 Siah-Interact_N: Siah 98.2 5.2E-07 1.1E-11 64.6 2.1 25 5-32 16-40 (79)
26 COG0071 IbpA Molecular chapero 98.1 2.2E-05 4.9E-10 62.1 9.7 82 58-140 39-135 (146)
27 cd06472 ACD_ScHsp26_like Alpha 98.0 5E-05 1.1E-09 55.3 8.4 76 61-137 1-92 (92)
28 KOG4379 Uncharacterized conser 98.0 1.4E-05 3.1E-10 73.3 6.3 88 58-150 288-378 (596)
29 PF00011 HSP20: Hsp20/alpha cr 97.7 0.00041 8.9E-09 50.9 9.4 77 63-140 1-90 (102)
30 cd06464 ACD_sHsps-like Alpha-c 97.7 0.00023 5E-09 50.2 7.7 74 63-137 1-88 (88)
31 cd06471 ACD_LpsHSP_like Group 97.6 0.00045 9.9E-09 50.2 8.1 75 61-137 2-93 (93)
32 cd06475 ACD_HspB1_like Alpha c 96.9 0.0069 1.5E-07 43.8 8.1 72 63-135 4-84 (86)
33 cd06526 metazoan_ACD Alpha-cry 96.9 0.0051 1.1E-07 43.8 7.1 68 69-137 7-83 (83)
34 cd06497 ACD_alphaA-crystallin_ 96.9 0.0065 1.4E-07 43.9 7.6 72 65-137 6-86 (86)
35 cd06479 ACD_HspB7_like Alpha c 96.8 0.0075 1.6E-07 43.3 7.4 72 65-137 4-81 (81)
36 cd06498 ACD_alphaB-crystallin_ 96.7 0.0095 2.1E-07 42.9 7.4 72 66-138 4-84 (84)
37 cd06470 ACD_IbpA-B_like Alpha- 96.6 0.026 5.7E-07 40.9 8.9 73 62-137 3-90 (90)
38 cd06478 ACD_HspB4-5-6 Alpha-cr 96.6 0.013 2.9E-07 41.9 7.2 71 66-137 4-83 (83)
39 PRK10743 heat shock protein Ib 96.6 0.027 5.8E-07 44.4 9.5 76 60-138 35-124 (137)
40 PRK11597 heat shock chaperone 96.1 0.069 1.5E-06 42.3 9.4 76 60-138 33-122 (142)
41 cd06476 ACD_HspB2_like Alpha c 96.1 0.044 9.6E-07 39.4 7.5 70 67-137 5-83 (83)
42 cd06481 ACD_HspB9_like Alpha c 95.7 0.055 1.2E-06 39.1 7.0 69 66-135 4-85 (87)
43 PF08190 PIH1: pre-RNA process 94.6 0.43 9.3E-06 41.9 10.5 66 67-136 259-327 (328)
44 cd06477 ACD_HspB3_Like Alpha c 94.2 0.4 8.8E-06 34.4 7.9 68 66-134 4-80 (83)
45 cd06482 ACD_HspB10 Alpha cryst 93.9 0.33 7.2E-06 35.2 7.0 66 67-133 6-83 (87)
46 PF05455 GvpH: GvpH; InterPro 91.0 2 4.4E-05 35.3 8.7 70 67-140 99-170 (177)
47 cd06480 ACD_HspB8_like Alpha-c 90.0 2.7 5.9E-05 30.7 7.9 66 69-135 15-89 (91)
48 PF11588 DUF3243: Protein of u 44.9 33 0.00071 24.7 3.4 33 160-192 45-77 (81)
49 PF08158 NUC130_3NT: NUC130/3N 44.6 41 0.00089 22.0 3.6 33 164-196 17-49 (52)
50 PF04818 CTD_bind: RNA polymer 39.9 39 0.00085 22.3 3.0 24 166-189 30-53 (64)
51 PF12690 BsuPI: Intracellular 38.8 52 0.0011 23.3 3.7 48 71-118 2-51 (82)
52 PF08898 DUF1843: Domain of un 35.6 25 0.00055 23.2 1.5 23 10-32 30-52 (53)
53 COG3354 FlaG Putative archaeal 33.5 1.2E+02 0.0026 24.3 5.2 57 72-136 71-129 (154)
54 COG4856 Uncharacterized protei 33.5 1.3E+02 0.0028 27.9 6.1 66 72-141 71-138 (403)
55 PF09087 Cyc-maltodext_N: Cycl 32.5 1.4E+02 0.003 21.7 5.1 15 65-79 45-59 (88)
56 KOG3591 Alpha crystallins [Pos 30.5 3E+02 0.0064 22.4 8.5 71 68-139 71-150 (173)
57 PF09829 DUF2057: Uncharacteri 29.0 53 0.0012 26.6 2.7 25 164-188 164-188 (189)
58 PF02985 HEAT: HEAT repeat; I 28.7 1.1E+02 0.0024 17.0 3.8 26 167-192 1-26 (31)
59 PF10929 DUF2811: Protein of u 25.9 46 0.001 22.3 1.5 35 154-193 21-55 (57)
60 PF09087 Cyc-maltodext_N: Cycl 25.8 2.4E+02 0.0053 20.4 5.4 58 69-138 14-72 (88)
61 KOG3247 Uncharacterized conser 24.2 43 0.00093 31.3 1.4 82 60-147 4-89 (466)
62 PF11841 DUF3361: Domain of un 23.6 1E+02 0.0022 25.0 3.4 29 165-193 120-148 (160)
63 PF01361 Tautomerase: Tautomer 22.7 60 0.0013 20.9 1.6 20 174-193 7-26 (60)
64 PF13670 PepSY_2: Peptidase pr 22.0 2.1E+02 0.0046 19.7 4.5 31 87-117 48-79 (83)
65 PRK02220 4-oxalocrotonate taut 20.7 96 0.0021 19.9 2.3 22 174-195 8-29 (61)
66 PRK02289 4-oxalocrotonate taut 20.4 98 0.0021 20.1 2.3 24 174-197 8-31 (60)
67 KOG0710 Molecular chaperone (s 20.3 2E+02 0.0044 23.7 4.6 80 60-140 83-182 (196)
No 1
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=100.00 E-value=9.5e-50 Score=320.86 Aligned_cols=198 Identities=38% Similarity=0.610 Sum_probs=174.1
Q ss_pred hhHhhhccCCcccchHHHHHHHHHHhhhhccc------cCCCCC----CCCCCCCCCCcceeeeecceeeeeCCCEEEEE
Q 028652 5 PRLIDFVNIPLVASVLPLIKYSLTSILQLSKE------EGPAPV----PTPAKVSSTPALNYITLGSFSWDQDNEKVKIY 74 (206)
Q Consensus 5 ~~ll~~a~R~~v~~v~~~l~~~~~~le~~~~~------~~~~~~----~~~~~~~~~~~~~~~~i~~y~W~Qt~~~V~I~ 74 (206)
+.||++|+||| |+++|+.|+++||+++.. +..++. +.+++..|..+.|.+.++.|+|+|+.++|++|
T Consensus 13 ~~ll~~Akr~R---V~d~ltseks~~E~ei~n~~~~kak~kae~~~~~~~s~s~~pvs~~yl~~vt~ygWDQs~kfVK~y 89 (224)
T KOG3260|consen 13 RQLLNIAKRPR---VLDLLTSEKSNLEKEIDNAVSSKAKPKAEVTVPAPVSSSGKPVSSSYLNYVTLYGWDQSNKFVKMY 89 (224)
T ss_pred HHHHHHhcccH---HHHHHHHHHHHHHHHHHHHHhhccccCcccccCCCccccCCcchhhhHHHhhhcCccccCCeeEEE
Confidence 57999999999 999999999999984321 111222 22233344455666888999999999999999
Q ss_pred EEecCCCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCCEEEEEEEeCCCCCcccccccc----
Q 028652 75 ISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNWLDLQYKE---- 150 (206)
Q Consensus 75 I~lk~v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~~W~~L~~~~---- 150 (206)
|++.||..++|+|+|+++||.+.+++++|++|.+.+++|+++|.|+.|+.+|+++.|.|.|+|.+..+|..|+..+
T Consensus 90 ItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkVe~~rwd~Lt~~~Ke~K 169 (224)
T KOG3260|consen 90 ITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKVENTRWDYLTQVEKECK 169 (224)
T ss_pred EEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhhhcccchHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999888888999998543
Q ss_pred CccCCCCCCCCCCchhHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 028652 151 DKLKPNLDKERDPMAGIMDLMKNMYEEGDDEMKRTIAKAWTDARSGKTADPLKGY 205 (206)
Q Consensus 151 ~k~kp~~d~~~dp~~~l~~lfkkiY~~gDde~kRam~Ks~~ES~~~~~~~~~~~~ 205 (206)
++.+|+.|++.||++|||++|++||++||++|||+|+|||+|||.+++.+|..|.
T Consensus 170 ek~kpsl~ke~DP~~glmnvmKk~YeDGD~~mK~tIaKAWtesr~k~a~g~~~g~ 224 (224)
T KOG3260|consen 170 EKEKPSLDKETDPSEGLMNVMKKIYEDGDDDMKQTIAKAWTESREKQAKGDTEGL 224 (224)
T ss_pred hccCccccccCChHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhcCCccCC
Confidence 3468999999999999999999999999999999999999999999999998874
No 2
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=100.00 E-value=5.8e-38 Score=280.96 Aligned_cols=143 Identities=22% Similarity=0.374 Sum_probs=126.8
Q ss_pred eeeecceeeeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCCEEEEEE
Q 028652 56 YITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIML 135 (206)
Q Consensus 56 ~~~i~~y~W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L 135 (206)
....+||+|||+.++|+|+|+++|++++++.|+|++++|+|.+...+|.+|.|.+ +||++|+|+.|+|+|.+.+|||+|
T Consensus 153 ~~~~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~-~L~~~I~p~~s~~~v~~~Kiei~l 231 (356)
T PLN03088 153 SKPKYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQP-RLFGKIIPDKCKYEVLSTKIEIRL 231 (356)
T ss_pred CCCccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecc-cccccccccccEEEEecceEEEEE
Confidence 3456899999999999999999999999999999999999999777788999986 999999999999999999999999
Q ss_pred EeCCCCCccccccccCcc-----------------------CCCCCC------------CCCCchhHHHHHHHHhcCCCH
Q 028652 136 FKASKGNWLDLQYKEDKL-----------------------KPNLDK------------ERDPMAGIMDLMKNMYEEGDD 180 (206)
Q Consensus 136 ~K~~~~~W~~L~~~~~k~-----------------------kp~~d~------------~~dp~~~l~~lfkkiY~~gDd 180 (206)
+|+++++|++|+..+... +.|||+ +.|++++||+|||+||++|||
T Consensus 232 ~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~dWdk~~~~~~~e~~~e~~~g~~~~~~~f~~iY~~~d~ 311 (356)
T PLN03088 232 AKAEPITWASLEYGKGPAVLPKPNVSSEVSQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKFFREIYQNADE 311 (356)
T ss_pred ecCCCCCccccccCCccccccCCCCCcCcccCCCCCCCCCCCCChhhhhhhhhhhhhccccccchHHHHHHHHHHhcCCH
Confidence 999988999998654210 227874 125688999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC
Q 028652 181 EMKRTIAKAWTDARSGKTA 199 (206)
Q Consensus 181 e~kRam~Ks~~ES~~~~~~ 199 (206)
||||||||||+|||||.++
T Consensus 312 d~rram~KSf~eS~gt~ls 330 (356)
T PLN03088 312 DTRRAMMKSFVESNGTVLS 330 (356)
T ss_pred HHHHHHHHHhhhcCCeEEe
Confidence 9999999999999999864
No 3
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=100.00 E-value=2e-36 Score=243.70 Aligned_cols=139 Identities=27% Similarity=0.452 Sum_probs=123.4
Q ss_pred cceeeeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCCEEEEEEEeCC
Q 028652 60 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKAS 139 (206)
Q Consensus 60 ~~y~W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~ 139 (206)
.||+|||+...|+|+|+.++|+.++|.|.|+++.|++.+...+|..|.+.. .||++|+|+.|+|++.+.+|||+|.|.+
T Consensus 4 ~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~-~L~~~I~pe~~s~k~~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 4 IRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQL-KLYHEIIPEKSSFKVFSTKVEITLAKAE 82 (196)
T ss_pred ccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhH-HhcccccccceeeEeeeeeEEEEecccc
Confidence 589999999999999999999999999999999999999877888999965 8999999999999999999999999988
Q ss_pred CCCccccccccCc-----------------cCC--CCCC--------CCCC---chhHHHHHHHHhcCCCHHHHHHHHHH
Q 028652 140 KGNWLDLQYKEDK-----------------LKP--NLDK--------ERDP---MAGIMDLMKNMYEEGDDEMKRTIAKA 189 (206)
Q Consensus 140 ~~~W~~L~~~~~k-----------------~kp--~~d~--------~~dp---~~~l~~lfkkiY~~gDde~kRam~Ks 189 (206)
...|..|.++... .+| |||+ +++| +|+||+||++||+++|||||||||||
T Consensus 83 ~irW~~Le~g~~~~~~~~~~vs~~~s~~Pssk~~kdWdkl~~e~~~eEe~e~l~dAAl~~lF~kiY~~addDvrRAM~KS 162 (196)
T KOG1309|consen 83 IIRWESLEKGKGSAVAPKPNVSSTASSYPSSKPAKDWDKLEKEEKKEEEDEKLEDAALNKLFQKIYSDADDDVRRAMMKS 162 (196)
T ss_pred chhhhhhhcccCcccccccccccccccCCCCCcccCHHHHHHHhhhhhhccchhHHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 8899999943310 022 7865 3344 78999999999999999999999999
Q ss_pred HHHhCCCCCC
Q 028652 190 WTDARSGKTA 199 (206)
Q Consensus 190 ~~ES~~~~~~ 199 (206)
|+|||||.++
T Consensus 163 f~ESnGTvLS 172 (196)
T KOG1309|consen 163 FSESNGTVLS 172 (196)
T ss_pred hhhcCCeEEe
Confidence 9999999764
No 4
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.88 E-value=3.1e-22 Score=146.46 Aligned_cols=89 Identities=47% Similarity=0.818 Sum_probs=82.8
Q ss_pred ecceeeeeCCCEEEEEEEecCCCC---CCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCCEEEEEE
Q 028652 59 LGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIML 135 (206)
Q Consensus 59 i~~y~W~Qt~~~V~I~I~lk~v~~---e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L 135 (206)
+++|+|+|+.+.|+|+|+++++.. +++.|.|++++|.|.+.+.+|.+|.+.+++||++|+|++|+|++.+++|+|+|
T Consensus 1 ~~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L 80 (92)
T cd06468 1 ITKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITL 80 (92)
T ss_pred CceeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEE
Confidence 478999999999999999998755 99999999999999997777889999887799999999999999999999999
Q ss_pred EeCCCCCccccc
Q 028652 136 FKASKGNWLDLQ 147 (206)
Q Consensus 136 ~K~~~~~W~~L~ 147 (206)
.|+++++|++|+
T Consensus 81 ~K~~~~~W~~L~ 92 (92)
T cd06468 81 AKKKEKKWESLT 92 (92)
T ss_pred EeCCCCccCccC
Confidence 999989999984
No 5
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.88 E-value=3.9e-22 Score=145.33 Aligned_cols=87 Identities=24% Similarity=0.298 Sum_probs=80.9
Q ss_pred cceeeeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCCEEEEEEEeCC
Q 028652 60 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKAS 139 (206)
Q Consensus 60 ~~y~W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~ 139 (206)
+||+|||+++.|+|+|++++++++++.+.|++++++|.+...+|+.|.+.+ +||++|+|+.|+|++.+++|+|+|+|++
T Consensus 1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l-~L~~~I~~~~s~~~v~~~kvei~L~K~~ 79 (87)
T cd06488 1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDI-ELWGVIDVEKSSVNMLPTKVEIKLRKAE 79 (87)
T ss_pred CCccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEe-eccceEChhHcEEEecCcEEEEEEEeCC
Confidence 589999999999999999999999999999999988877555677899988 9999999999999999999999999999
Q ss_pred CCCccccc
Q 028652 140 KGNWLDLQ 147 (206)
Q Consensus 140 ~~~W~~L~ 147 (206)
+++|++|+
T Consensus 80 ~~~W~~Le 87 (87)
T cd06488 80 PGSWAKLE 87 (87)
T ss_pred CCcCccCC
Confidence 89999985
No 6
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=99.86 E-value=2.8e-22 Score=171.60 Aligned_cols=141 Identities=15% Similarity=0.277 Sum_probs=112.5
Q ss_pred ecceeeeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCCEEEEEEEeC
Q 028652 59 LGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKA 138 (206)
Q Consensus 59 i~~y~W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~ 138 (206)
..+|+|.||...+.|.|+-+.+..++|..-++++.|+|.+....+.-+......||++|+|+.+++++.+.+++++|+|.
T Consensus 176 ~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~KV 255 (368)
T COG5091 176 EIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKV 255 (368)
T ss_pred eeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhhhh
Confidence 34788888888888888888888899999999999999986655544433334999999999999999999999999999
Q ss_pred CCCCccccccccC----------c----c-----CC--CCCC-----CCCC--chhHHHHHHHHhcCCCHHHHHHHHHHH
Q 028652 139 SKGNWLDLQYKED----------K----L-----KP--NLDK-----ERDP--MAGIMDLMKNMYEEGDDEMKRTIAKAW 190 (206)
Q Consensus 139 ~~~~W~~L~~~~~----------k----~-----kp--~~d~-----~~dp--~~~l~~lfkkiY~~gDde~kRam~Ks~ 190 (206)
+...|..|....- + . ++ ||++ +.|. ..++.+|||+||+++|||+||||||||
T Consensus 256 ~~v~W~~l~~~pa~~S~~l~~e~~N~~SAt~~s~~k~~Dw~~l~~~~~~dEe~ps~~dslFqklY~~addDtrRAMmKSf 335 (368)
T COG5091 256 EMVRWGGLNGRPADESSRLSDEGKNSDSATPKSSKKQDDWKELMVEDSGDEENPSVMDSLFQKLYQRADDDTRRAMMKSF 335 (368)
T ss_pred hhhhhcccccCccccccccccccccccccCCccccccccHHHhhhhhcccccCchHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 9899999985321 0 0 12 6743 2222 223567999999999999999999999
Q ss_pred HHhCCCCCC
Q 028652 191 TDARSGKTA 199 (206)
Q Consensus 191 ~ES~~~~~~ 199 (206)
+||+|+..+
T Consensus 336 ~ESnGTaLS 344 (368)
T COG5091 336 YESNGTALS 344 (368)
T ss_pred hhcCCceec
Confidence 999999764
No 7
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.86 E-value=2e-21 Score=140.17 Aligned_cols=84 Identities=26% Similarity=0.442 Sum_probs=79.6
Q ss_pred eeeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCCEEEEEEEeCCCCC
Q 028652 63 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGN 142 (206)
Q Consensus 63 ~W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~~ 142 (206)
+|||+++.|+|+|++++++++++.|+|++++|+|.+.+.+|.+|.+.+ +||++|+|++|+|++.+++|+|+|+|+++++
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~-~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~ 79 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKL-HLLHPIVPEQSSYKILSTKIEIKLKKTEAIR 79 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEee-ecCceecchhcEEEEeCcEEEEEEEcCCCCC
Confidence 699999999999999999999999999999999999776778899988 9999999999999999999999999998889
Q ss_pred ccccc
Q 028652 143 WLDLQ 147 (206)
Q Consensus 143 W~~L~ 147 (206)
|++|+
T Consensus 80 W~~Le 84 (84)
T cd06489 80 WSKLE 84 (84)
T ss_pred CccCC
Confidence 99985
No 8
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.86 E-value=4.8e-21 Score=144.54 Aligned_cols=98 Identities=28% Similarity=0.383 Sum_probs=86.5
Q ss_pred cceeeeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeC-CCceeEEecCCcCcccccCCceEEEcCCEEEEEEEeC
Q 028652 60 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV-QGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKA 138 (206)
Q Consensus 60 ~~y~W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~-~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~ 138 (206)
+.|+|+||.+.|+|+|+++++ +++.|.|++++|+|.+.+. ++++|.+.+ +||++|+|++|+|++.+++|+|+|+|+
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~-~L~~~I~pe~s~~~v~~~kveI~L~K~ 77 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDL-EFYKEIDPEESKYKVTGRQIEFVLRKK 77 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEe-EhhhhccccccEEEecCCeEEEEEEEC
Confidence 369999999999999999997 8999999999999999764 577799877 999999999999999999999999999
Q ss_pred C-CCCccccccccCcc---CCCCCCC
Q 028652 139 S-KGNWLDLQYKEDKL---KPNLDKE 160 (206)
Q Consensus 139 ~-~~~W~~L~~~~~k~---kp~~d~~ 160 (206)
+ +++|++|+..+.+. ++||+..
T Consensus 78 ~~~~~W~~L~~~~~k~~~~~~d~~~w 103 (108)
T cd06465 78 EAGEYWPRLTKEKGKLPWLKVDFDKW 103 (108)
T ss_pred CCCCCCcccccCCCCCCceECCchhc
Confidence 9 78999999766553 5567653
No 9
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=99.83 E-value=6.5e-20 Score=138.53 Aligned_cols=99 Identities=17% Similarity=0.245 Sum_probs=86.2
Q ss_pred cceeeeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCCEEEEEEEeCC
Q 028652 60 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKAS 139 (206)
Q Consensus 60 ~~y~W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~ 139 (206)
+.+.|+|+.+.|+|+|.++++ +++.|+|++++|+|.+.+.+|.+|.+.+ +||++|+|++|++++.+++|+|.|+|++
T Consensus 2 p~v~WaQr~~~V~ltI~v~d~--~d~~v~l~~~~l~f~~~~~~g~~y~~~l-~l~~~I~pe~Sk~~v~~r~ve~~L~K~~ 78 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVEDS--KDVKVDFEKSKLTFSCLNGDNVKIYNEI-ELYDRVDPNDSKHKRTDRSILCCLRKGK 78 (106)
T ss_pred CcceeeECCCEEEEEEEeCCC--CCcEEEEecCEEEEEEECCCCcEEEEEE-EeecccCcccCeEEeCCceEEEEEEeCC
Confidence 468899999999999999984 8999999999999998665778899877 9999999999999999999999999998
Q ss_pred CC-CccccccccCcc---CCCCCCCC
Q 028652 140 KG-NWLDLQYKEDKL---KPNLDKER 161 (206)
Q Consensus 140 ~~-~W~~L~~~~~k~---kp~~d~~~ 161 (206)
++ +|++|++...+. ++|||+.-
T Consensus 79 ~~~~WprL~k~~~k~~~lk~DfdkW~ 104 (106)
T cd00237 79 EGVAWPRLTKEKAKPNWLSVDFDNWR 104 (106)
T ss_pred CCCCCchhhcCCCCCCcEECcchhcc
Confidence 65 999999755442 55787643
No 10
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.81 E-value=1.4e-19 Score=129.57 Aligned_cols=84 Identities=35% Similarity=0.515 Sum_probs=78.4
Q ss_pred eeeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCCEEEEEEEeCCCCC
Q 028652 63 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGN 142 (206)
Q Consensus 63 ~W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~~ 142 (206)
+|+|+++.|+|+|+++|+.++++.|.|++++|.|.+...++++|.+.+ +||++|+|++|+|++.+++|+|+|+|+++++
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~-~L~~~I~~~~s~~~~~~~~vei~L~K~~~~~ 79 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLEL-DLFGPIDPEQSKVSVLPTKVEITLKKAEPGS 79 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEec-ccccccCchhcEEEEeCeEEEEEEEcCCCCC
Confidence 699999999999999999999999999999999998754467899987 8999999999999999999999999999999
Q ss_pred ccccc
Q 028652 143 WLDLQ 147 (206)
Q Consensus 143 W~~L~ 147 (206)
|++|+
T Consensus 80 W~~L~ 84 (84)
T cd06466 80 WPSLE 84 (84)
T ss_pred CccCC
Confidence 99985
No 11
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.75 E-value=7.8e-18 Score=121.96 Aligned_cols=82 Identities=20% Similarity=0.414 Sum_probs=71.5
Q ss_pred eeeeeCCCEEEEEEEec-CCCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCC-EEEEEEEeCC
Q 028652 62 FSWDQDNEKVKIYISLE-GVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPT-RVVIMLFKAS 139 (206)
Q Consensus 62 y~W~Qt~~~V~I~I~lk-~v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~-kIeI~L~K~~ 139 (206)
|+|+||.+.|.|+|+++ ++.++++.|.|++++|.|.+. ++. .+..++||+.|+|++|+|++.++ +|+|.|.|++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~--~~~--~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~ 76 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK--DQA--PLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKD 76 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC--CCC--eEEeCcccCcccccCcEEEEeCCCEEEEEEEECC
Confidence 89999999999999995 889999999999999999874 222 23357999999999999999766 6999999999
Q ss_pred CC-Cccccc
Q 028652 140 KG-NWLDLQ 147 (206)
Q Consensus 140 ~~-~W~~L~ 147 (206)
++ +|++|.
T Consensus 77 ~~~~W~~L~ 85 (85)
T cd06493 77 EGPTWPELV 85 (85)
T ss_pred CCccccccC
Confidence 77 999983
No 12
>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins. Sgt1p is a highly conserved eukaryotic protein that is required for both SCF (Skp1p/Cdc53p-Cullin-F-box)-mediated ubiquitination and kinetochore function in yeast and also plays a role in the cAMP pathway. Calcyclin (S100A6) is a member of the S100A family of calcium binding proteins and appears to play a role in cell proliferation [].; PDB: 1X5M_A 2JTT_D.
Probab=99.74 E-value=4.6e-19 Score=127.39 Aligned_cols=57 Identities=40% Similarity=0.735 Sum_probs=31.6
Q ss_pred CCccccccccCccCCCCCCCCCCchhHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCC
Q 028652 141 GNWLDLQYKEDKLKPNLDKERDPMAGIMDLMKNMYEEGDDEMKRTIAKAWTDARSGKTA 199 (206)
Q Consensus 141 ~~W~~L~~~~~k~kp~~d~~~dp~~~l~~lfkkiY~~gDde~kRam~Ks~~ES~~~~~~ 199 (206)
..|.+|+.... .+.-+++.+|+++||+|||+||++|||||||||+|||+|||||.++
T Consensus 2 ~~W~~l~~~~~--~~~~~d~~d~~a~lm~lfkkiY~~gDDe~KRam~KSf~ES~GT~LS 58 (82)
T PF05002_consen 2 KNWDKLTKKKE--KEEEDDEEDPEASLMNLFKKIYDNGDDEMKRAMMKSFTESQGTVLS 58 (82)
T ss_dssp ---SSSBHH----------------SHHHHHHHHHTTS-SCHHHHHHHHHHCT------
T ss_pred CChHHcccccc--ccccccccCchHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCcccc
Confidence 36999985421 2223446788999999999999999999999999999999999875
No 13
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.74 E-value=2.1e-17 Score=115.93 Aligned_cols=77 Identities=27% Similarity=0.477 Sum_probs=68.8
Q ss_pred cceeeeeCCCEEEEEEEecCC--CCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCCEEEEEEEe
Q 028652 60 GSFSWDQDNEKVKIYISLEGV--VQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFK 137 (206)
Q Consensus 60 ~~y~W~Qt~~~V~I~I~lk~v--~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K 137 (206)
++|+|+|+.+.|+|+|++++. .++++.|+|++++|.|.+...++..|.+.. +||++|+|++|+|++.+++|+|+|+|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~-~L~~~I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEG-ELFGEIDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEE-EBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEE-EEeeeEcchhcEEEEECCEEEEEEEC
Confidence 589999999999999999765 489999999999999999866667888876 89999999999999999999999998
No 14
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.73 E-value=3.3e-17 Score=115.77 Aligned_cols=83 Identities=31% Similarity=0.446 Sum_probs=77.2
Q ss_pred eeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCCEEEEEEEeCCC-CC
Q 028652 64 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASK-GN 142 (206)
Q Consensus 64 W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~-~~ 142 (206)
|+|+++.|+|+|+++++.++++.|.|++++|.|.+.+.++..|.+.+ +|+++|+|++|+|++.+++|+|+|.|+.+ ++
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~-~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~ 79 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEG-ELFGPIDPEESKWTVEDRKIEITLKKKEPGEW 79 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEee-EccCccchhhcEEEEeCCEEEEEEEECCCCCC
Confidence 99999999999999999899999999999999999765567899987 79999999999999999999999999998 69
Q ss_pred ccccc
Q 028652 143 WLDLQ 147 (206)
Q Consensus 143 W~~L~ 147 (206)
|++|+
T Consensus 80 W~~l~ 84 (84)
T cd06463 80 WPRLE 84 (84)
T ss_pred CcccC
Confidence 99984
No 15
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.72 E-value=4.4e-17 Score=117.09 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=72.9
Q ss_pred eeeeeCCCEEEEEEEec-CCCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcC-CEEEEEEEeCC
Q 028652 62 FSWDQDNEKVKIYISLE-GVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKP-TRVVIMLFKAS 139 (206)
Q Consensus 62 y~W~Qt~~~V~I~I~lk-~v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~-~kIeI~L~K~~ 139 (206)
|+|+|+.+.|+|+|.++ ++.++++.|+|++++|+|.+.+ ..+.+ .+.||++|+|++|+|++.+ ++|+|+|.|++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~---~~~~l-~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~ 76 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG---GEPLL-DGELYAKVKVDESTWTLEDGKLLEITLEKRN 76 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC---CCceE-cCcccCceeEcCCEEEEeCCCEEEEEEEECC
Confidence 89999999999999996 6788999999999999999853 23444 4699999999999999999 99999999999
Q ss_pred C-CCccccc
Q 028652 140 K-GNWLDLQ 147 (206)
Q Consensus 140 ~-~~W~~L~ 147 (206)
+ .+|++|.
T Consensus 77 ~~~~W~~L~ 85 (85)
T cd06467 77 EGEWWPSLV 85 (85)
T ss_pred CCccccccC
Confidence 8 5999984
No 16
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.71 E-value=4.9e-17 Score=115.06 Aligned_cols=78 Identities=32% Similarity=0.470 Sum_probs=72.3
Q ss_pred eeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCCEEEEEEEeCCCCCc
Q 028652 64 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKGNW 143 (206)
Q Consensus 64 W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~~W 143 (206)
|+|+++.|+|+|+++|+.++++.|.++++.|.+.+ ..|.+.+ +||++|+|++|++++.+++|+|+|.|+++++|
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-----~~~~~~~-~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~W 74 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-----PPYLFEL-DLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIW 74 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC-----CCEEEEE-eCcccccccccEEEEeCCEEEEEEEeCCCCcc
Confidence 99999999999999999999999999998877754 4688877 99999999999999999999999999998999
Q ss_pred cccc
Q 028652 144 LDLQ 147 (206)
Q Consensus 144 ~~L~ 147 (206)
++|+
T Consensus 75 ~~L~ 78 (78)
T cd06469 75 EALC 78 (78)
T ss_pred cccC
Confidence 9984
No 17
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.69 E-value=1.5e-16 Score=116.02 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=71.4
Q ss_pred eeeeeCCCEEEEEEEecC--CCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEc--CCEEEEEEEe
Q 028652 62 FSWDQDNEKVKIYISLEG--VVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVK--PTRVVIMLFK 137 (206)
Q Consensus 62 y~W~Qt~~~V~I~I~lk~--v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~--~~kIeI~L~K 137 (206)
|+|||+++.|+|+||.++ .+..++.+.+.+++|++.+.-. +..|.+.+ +||++|+|+. ++++. ++||||+|+|
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-~~~~~~~~-~L~~~I~~~~-~~~~~~~~~KVEI~L~K 77 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-DKSYLLHL-DLSNEVQWPC-EVRISTETGKIELVLKK 77 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-CceEEEee-eccccCCCCc-EEEEcccCceEEEEEEc
Confidence 799999999999999884 5677788888998999988533 67788877 9999998764 88998 5599999999
Q ss_pred CCCCCccccc
Q 028652 138 ASKGNWLDLQ 147 (206)
Q Consensus 138 ~~~~~W~~L~ 147 (206)
+++..|++|.
T Consensus 78 ~e~~~W~~Lg 87 (87)
T cd06490 78 KEPEKWTSLG 87 (87)
T ss_pred CCCCccccCc
Confidence 9999999984
No 18
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.65 E-value=1.2e-15 Score=112.73 Aligned_cols=84 Identities=15% Similarity=0.308 Sum_probs=73.6
Q ss_pred ecceeeeeCCCEEEEEEEec-CCCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCCE-EEEEEE
Q 028652 59 LGSFSWDQDNEKVKIYISLE-GVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTR-VVIMLF 136 (206)
Q Consensus 59 i~~y~W~Qt~~~V~I~I~lk-~v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~k-IeI~L~ 136 (206)
...|.|+||.+.|.|+|.++ ++.++++.|.|++++|.|.+. |.. +.-++||+.|+|++|+|++.+++ |+|.|.
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~---g~~--~l~G~L~~~I~~destWtled~k~l~I~L~ 79 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK---GQE--VLKGKLFDSVVADECTWTLEDRKLIRIVLT 79 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC---CEE--EEcCcccCccCcccCEEEEECCcEEEEEEE
Confidence 36899999999999999886 889999999999999999984 333 44589999999999999999998 699999
Q ss_pred eCCCC---Cccccc
Q 028652 137 KASKG---NWLDLQ 147 (206)
Q Consensus 137 K~~~~---~W~~L~ 147 (206)
|.+.+ +|++|.
T Consensus 80 K~~~~~~~~W~sl~ 93 (93)
T cd06494 80 KSNRDAGNCWKSLL 93 (93)
T ss_pred eCCCCCCccccccC
Confidence 99644 999873
No 19
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.63 E-value=2.6e-15 Score=112.67 Aligned_cols=90 Identities=21% Similarity=0.347 Sum_probs=76.9
Q ss_pred cceeeeeCCCEEEEEEEec-CC-CCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCC-EEEEEEE
Q 028652 60 GSFSWDQDNEKVKIYISLE-GV-VQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPT-RVVIMLF 136 (206)
Q Consensus 60 ~~y~W~Qt~~~V~I~I~lk-~v-~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~-kIeI~L~ 136 (206)
.+|.|.||.+.|.|+|.++ ++ ..+++.|+|+.++|.|.+.+.+|.. .+.-++||+.|++++|+|.+.++ .|+|+|.
T Consensus 5 e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~-~~i~G~L~~~V~~des~Wtled~~~l~I~L~ 83 (102)
T cd06495 5 ENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEK-VLMEGEFTHKINTENSLWSLEPGKCVLLSLS 83 (102)
T ss_pred CceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCc-eEEeCcccCcccCccceEEEeCCCEEEEEEE
Confidence 5899999999999999998 53 5899999999999999996433322 34568999999999999999986 4899999
Q ss_pred eCCCCCcccccccc
Q 028652 137 KASKGNWLDLQYKE 150 (206)
Q Consensus 137 K~~~~~W~~L~~~~ 150 (206)
|..+.||++|...+
T Consensus 84 K~~~~wW~~v~~g~ 97 (102)
T cd06495 84 KCSEVWWNAVLKGE 97 (102)
T ss_pred ECCCcccchhhCCC
Confidence 99877999998655
No 20
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.59 E-value=7e-15 Score=107.30 Aligned_cols=82 Identities=18% Similarity=0.294 Sum_probs=71.2
Q ss_pred eeeeeCCCEEEEEEEec-C--CCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCC-EEEEEEEe
Q 028652 62 FSWDQDNEKVKIYISLE-G--VVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPT-RVVIMLFK 137 (206)
Q Consensus 62 y~W~Qt~~~V~I~I~lk-~--v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~-kIeI~L~K 137 (206)
|.|.||.+.|.|+|.++ + +.++++.|+|+.++|.|.+.+ ..+.+ -++||++|+|++|+|.+.++ .|+|+|.|
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g---~~~~i-~G~L~~~V~~des~Wtled~~~l~i~L~K 76 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKG---QPPII-DGELYNEVKVEESSWLIEDGKVVTVNLEK 76 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECC---CceEE-eCcccCcccccccEEEEeCCCEEEEEEEE
Confidence 89999999999999996 3 688999999999999998853 34444 57999999999999999885 69999999
Q ss_pred CCCC-Cccccc
Q 028652 138 ASKG-NWLDLQ 147 (206)
Q Consensus 138 ~~~~-~W~~L~ 147 (206)
..++ +|++|.
T Consensus 77 ~~~~~wW~~l~ 87 (87)
T cd06492 77 INKMEWWSRLV 87 (87)
T ss_pred CCCCccccccC
Confidence 9765 999984
No 21
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=7.9e-15 Score=118.11 Aligned_cols=88 Identities=18% Similarity=0.296 Sum_probs=77.8
Q ss_pred cceeeeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEe-CCCceeEEecCCcCcccccCCceEEEcCCEEEEEEEeC
Q 028652 60 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHD-VQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKA 138 (206)
Q Consensus 60 ~~y~W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~-~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~ 138 (206)
+...|+|+.+.|+|+|.+.+ ..++.|++++..|+|++.+ .++..|.+.| +||++|+|++|++++.++.|.+.|+|+
T Consensus 8 p~v~Waqr~~~vyltv~Ved--~~d~~v~~e~~~l~fs~k~~~d~~~~~~~i-ef~~eIdpe~sk~k~~~r~if~i~~K~ 84 (180)
T KOG3158|consen 8 PEVKWAQRRDLVYLTVCVED--AKDVHVNLEPSKLTFSCKSGADNHKYENEI-EFFDEIDPEKSKHKRTSRSIFCILRKK 84 (180)
T ss_pred CcchhhhhcCeEEEEEEecc--CccceeeccccEEEEEeccCCCceeeEEee-ehhhhcCHhhccccccceEEEEEEEcc
Confidence 45679999999999999985 4788999999999999976 6677788877 999999999999999999999999999
Q ss_pred CC-CCcccccccc
Q 028652 139 SK-GNWLDLQYKE 150 (206)
Q Consensus 139 ~~-~~W~~L~~~~ 150 (206)
+. .+||+|++..
T Consensus 85 e~~~~WprLtkeK 97 (180)
T KOG3158|consen 85 ELGEYWPRLTKEK 97 (180)
T ss_pred ccccccchhhhcc
Confidence 98 5999999533
No 22
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=99.55 E-value=2.4e-14 Score=115.56 Aligned_cols=126 Identities=21% Similarity=0.351 Sum_probs=89.1
Q ss_pred eecceeeeeCCCEEEEEEEec-CC-CCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCCEE-EEE
Q 028652 58 TLGSFSWDQDNEKVKIYISLE-GV-VQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRV-VIM 134 (206)
Q Consensus 58 ~i~~y~W~Qt~~~V~I~I~lk-~v-~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kI-eI~ 134 (206)
....|.|+||...|.|+|.++ |+ ...+|.|.+..++|.|.+.+ .+ .+.-++|+++|++++|.|+|.++++ .+.
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg---~~-~ildG~L~~~vk~des~WtiEd~k~i~i~ 92 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKG---QP-PILDGELSHSVKVDESTWTIEDGKMIVIL 92 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCC---CC-ceecCccccccccccceEEecCCEEEEEE
Confidence 457899999999999999986 66 88999999999999998854 33 3446899999999999999999965 555
Q ss_pred EEeCCC-CCccccccccCccCCCCCCCCCCch-hHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCC
Q 028652 135 LFKASK-GNWLDLQYKEDKLKPNLDKERDPMA-GIMDLMKNMYEEGDDEMKRTIAKAWTDARSGKT 198 (206)
Q Consensus 135 L~K~~~-~~W~~L~~~~~k~kp~~d~~~dp~~-~l~~lfkkiY~~gDde~kRam~Ks~~ES~~~~~ 198 (206)
|.|... .||.+|...+..+.|. .-+|+. .+ ++.|+|+|.++-|.++..+++.+
T Consensus 93 l~K~~~~eWW~~ll~gep~ID~~---ki~~e~skl--------~dldeEtra~vekmmfdq~qk~~ 147 (179)
T KOG2265|consen 93 LKKSNKMEWWDSLLEGEPEIDTK---KIEPEESKL--------SDLDEETRATVEKMMFDQRQKSM 147 (179)
T ss_pred eeccchHHHHHHHHcCCCCCCcc---ccChhhhhh--------hhccHHHHHhhhccchhHHHhhc
Confidence 555553 4999999776433320 122211 11 34455555555555555554443
No 23
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=99.34 E-value=3.6e-12 Score=108.37 Aligned_cols=93 Identities=23% Similarity=0.340 Sum_probs=82.5
Q ss_pred eeecceeeeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEe-CCCceeEEecCCcCcccccCCceEEEcCCEEEEEE
Q 028652 57 ITLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHD-VQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIML 135 (206)
Q Consensus 57 ~~i~~y~W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~-~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L 135 (206)
+.-.||+|.||+.+|+|.||.++..++.-.|+.....|+|.+.- .++..|.+.+ +|++.|++++|+..+..++|||+|
T Consensus 212 V~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~-kLwgvvnve~s~v~m~~tkVEIsl 290 (320)
T KOG1667|consen 212 VVKCRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDY-KLWGVVNVEESSVVMGETKVEISL 290 (320)
T ss_pred cccchhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccc-eeeeeechhhceEEeecceEEEEE
Confidence 45679999999999999999998877777888888888888753 5667888877 999999999999999999999999
Q ss_pred EeCCCCCcccccccc
Q 028652 136 FKASKGNWLDLQYKE 150 (206)
Q Consensus 136 ~K~~~~~W~~L~~~~ 150 (206)
+|++++.|++|....
T Consensus 291 ~k~ep~sWa~Le~p~ 305 (320)
T KOG1667|consen 291 KKAEPGSWARLEFPP 305 (320)
T ss_pred eccCCCCcccccCCH
Confidence 999999999999654
No 24
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.18 E-value=9.2e-11 Score=80.58 Aligned_cols=73 Identities=22% Similarity=0.345 Sum_probs=66.8
Q ss_pred eeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeC-------CCceeEEecCCcCcccccCCceEEEcCCEEEEEEE
Q 028652 64 WDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV-------QGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLF 136 (206)
Q Consensus 64 W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~-------~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~ 136 (206)
|+|+.+.|.|+|+++++.++++.|.|+++.|.|.+... .+..|.+.+ .|+++|+|+.+++.+.++.|+|.|.
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~-~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSF-ELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEE-ECCCCcCHHHCEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999998643 246788887 7999999999999999999999998
Q ss_pred e
Q 028652 137 K 137 (206)
Q Consensus 137 K 137 (206)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 6
No 25
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=98.24 E-value=5.2e-07 Score=64.62 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=24.0
Q ss_pred hhHhhhccCCcccchHHHHHHHHHHhhh
Q 028652 5 PRLIDFVNIPLVASVLPLIKYSLTSILQ 32 (206)
Q Consensus 5 ~~ll~~a~R~~v~~v~~~l~~~~~~le~ 32 (206)
++||++|+|+| |+++|+.||++||+
T Consensus 16 ~~Ll~~a~R~r---Vk~~L~~ei~klE~ 40 (79)
T PF09032_consen 16 KSLLEQAKRKR---VKDLLTNEIRKLET 40 (79)
T ss_dssp HHHHHHTTTCC---HHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHH---HHHHHHHHHHHHHH
Confidence 58999999999 99999999999998
No 26
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.2e-05 Score=62.09 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=71.5
Q ss_pred eecceeeeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCC---------------CceeEEecCCcCcccccCCc
Q 028652 58 TLGSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ---------------GKNYRFTSPRLNQEIVPEKS 122 (206)
Q Consensus 58 ~i~~y~W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~---------------gk~y~l~i~~L~~~I~pe~S 122 (206)
..+.|+++++++.+.|++.++|+.+++|.|.+.++.|+|++...+ ...|.-.+ .|...|+|+..
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~-~Lp~~v~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTF-RLPEKVDPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEE-ECcccccccce
Confidence 457899999999999999999999999999999999999985432 13466666 99999999988
Q ss_pred eEEEcCCEEEEEEEeCCC
Q 028652 123 KVLVKPTRVVIMLFKASK 140 (206)
Q Consensus 123 ~~kv~~~kIeI~L~K~~~ 140 (206)
.-+..++-+.|+|.|..+
T Consensus 118 ~A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEP 135 (146)
T ss_pred eeEeeCcEEEEEEecccc
Confidence 999999999999999765
No 27
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=97.99 E-value=5e-05 Score=55.31 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=62.5
Q ss_pred ceeeeeCCCEEEEEEEecCCCCCCcEEEEeee-EEEEEEEeC-----CC----------ceeEEecCCcCcccccCCceE
Q 028652 61 SFSWDQDNEKVKIYISLEGVVQDKMEAEFKQW-SFDVKFHDV-----QG----------KNYRFTSPRLNQEIVPEKSKV 124 (206)
Q Consensus 61 ~y~W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~-sl~v~i~~~-----~g----------k~y~l~i~~L~~~I~pe~S~~ 124 (206)
+++|+++++.+.|++.++|+.++++.|.+..+ .|.|+.... .+ ..|.-.+ .|-..|+++.-+.
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i-~LP~~v~~~~i~A 79 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRF-RLPENADADEVKA 79 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEE-ECCCCCCHHHCEE
Confidence 46899999999999999999999999999875 788887421 11 2355555 8889999998899
Q ss_pred EEcCCEEEEEEEe
Q 028652 125 LVKPTRVVIMLFK 137 (206)
Q Consensus 125 kv~~~kIeI~L~K 137 (206)
...++-+.|+|-|
T Consensus 80 ~~~nGvL~I~lPK 92 (92)
T cd06472 80 FLENGVLTVTVPK 92 (92)
T ss_pred EEECCEEEEEecC
Confidence 9999999999876
No 28
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=97.97 E-value=1.4e-05 Score=73.27 Aligned_cols=88 Identities=18% Similarity=0.239 Sum_probs=74.8
Q ss_pred eecceeeeeCCCEEEEEEEecC-CCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcC-CEEEEEE
Q 028652 58 TLGSFSWDQDNEKVKIYISLEG-VVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKP-TRVVIML 135 (206)
Q Consensus 58 ~i~~y~W~Qt~~~V~I~I~lk~-v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~-~kIeI~L 135 (206)
.-+.|.|.|+.+.+.+++.++. +..+++.|.+..+.+-+... .+.+.-+.||+.|..+.|.|.+.. +++++.|
T Consensus 288 ~~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~-----dh~~~~g~lyasv~he~s~~ii~ean~Le~sl 362 (596)
T KOG4379|consen 288 GPPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHL-----DHVIFDGELYASVGHELSAFIIAEANGLELSL 362 (596)
T ss_pred CCccceeeeccCcceEEEecccccccceEEEEecCceEEEEee-----eeEEeccchhhhccccchhhhhhhhccceEEE
Confidence 3467999999999999999984 47889999999988877663 355656899999999999999986 7999999
Q ss_pred EeCCCC-Ccccccccc
Q 028652 136 FKASKG-NWLDLQYKE 150 (206)
Q Consensus 136 ~K~~~~-~W~~L~~~~ 150 (206)
.|++++ .|++|..++
T Consensus 363 ~K~de~~twprL~~~d 378 (596)
T KOG4379|consen 363 TKADEIQTWPRLFAQD 378 (596)
T ss_pred eecccccccchheeec
Confidence 999776 999998543
No 29
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.72 E-value=0.00041 Score=50.95 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=60.4
Q ss_pred eeeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeC----CC---------ceeEEecCCcCcccccCCceEEEcCC
Q 028652 63 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV----QG---------KNYRFTSPRLNQEIVPEKSKVLVKPT 129 (206)
Q Consensus 63 ~W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~----~g---------k~y~l~i~~L~~~I~pe~S~~kv~~~ 129 (206)
+|.++++.+.|.+.++|+.++++.|.+.++.|.|..... ++ ..|.-.+ .|-..|+++.-+.++.++
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~-~lP~~vd~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSI-RLPEDVDPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEE-E-STTB-GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEE-cCCCcCCcceEEEEecCC
Confidence 689999999999999999999999999999998887432 11 2345455 888899999999999999
Q ss_pred EEEEEEEeCCC
Q 028652 130 RVVIMLFKASK 140 (206)
Q Consensus 130 kIeI~L~K~~~ 140 (206)
.+.|++.|...
T Consensus 80 vL~I~~pk~~~ 90 (102)
T PF00011_consen 80 VLTITIPKKEE 90 (102)
T ss_dssp EEEEEEEBSSS
T ss_pred EEEEEEEcccc
Confidence 99999999764
No 30
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.71 E-value=0.00023 Score=50.17 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=62.8
Q ss_pred eeeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCC--------------CceeEEecCCcCcccccCCceEEEcC
Q 028652 63 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ--------------GKNYRFTSPRLNQEIVPEKSKVLVKP 128 (206)
Q Consensus 63 ~W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~--------------gk~y~l~i~~L~~~I~pe~S~~kv~~ 128 (206)
+++++++.+.|.+.++|+.++++.|.+.++.|.|...... ...|.-.+ .|-..|+++..+..+.+
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~-~LP~~vd~~~i~a~~~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSF-RLPEDVDPDKIKASLEN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEE-ECCCCcCHHHcEEEEeC
Confidence 3678889999999999999999999999999999874211 34577766 89999999999999999
Q ss_pred CEEEEEEEe
Q 028652 129 TRVVIMLFK 137 (206)
Q Consensus 129 ~kIeI~L~K 137 (206)
+.++|++.|
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999865
No 31
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.60 E-value=0.00045 Score=50.16 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=59.9
Q ss_pred ceeeeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCC--------C---------ceeEEecCCcCcccccCCce
Q 028652 61 SFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ--------G---------KNYRFTSPRLNQEIVPEKSK 123 (206)
Q Consensus 61 ~y~W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~--------g---------k~y~l~i~~L~~~I~pe~S~ 123 (206)
+.+++++++.+.|.+.++|+.++++.|.+..+.|.|...... + ..|.-.+ .|- .|+++..+
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~-~lp-~v~~~~i~ 79 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSF-YLP-NVDEEEIK 79 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEE-ECC-CCCHHHCE
Confidence 578999999999999999999999999999999999774311 0 1233333 553 78988889
Q ss_pred EEEcCCEEEEEEEe
Q 028652 124 VLVKPTRVVIMLFK 137 (206)
Q Consensus 124 ~kv~~~kIeI~L~K 137 (206)
.++.++.+.|+|.|
T Consensus 80 A~~~dGvL~I~lPK 93 (93)
T cd06471 80 AKYENGVLKITLPK 93 (93)
T ss_pred EEEECCEEEEEEcC
Confidence 99999999999876
No 32
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=96.94 E-value=0.0069 Score=43.79 Aligned_cols=72 Identities=7% Similarity=0.099 Sum_probs=58.9
Q ss_pred eeeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCC----C----ceeEEecCCcCcccccCCceEEEc-CCEEEE
Q 028652 63 SWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ----G----KNYRFTSPRLNQEIVPEKSKVLVK-PTRVVI 133 (206)
Q Consensus 63 ~W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~----g----k~y~l~i~~L~~~I~pe~S~~kv~-~~kIeI 133 (206)
+++.+++.+.|.+.++|+.++++.|++.++.|.|+..... + ..|.-.+ .|-..|+++.-+-.+. ++-+.|
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f-~LP~~vd~~~v~A~~~~dGvL~I 82 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKY-TLPPGVDPTAVTSSLSPDGILTV 82 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEE-ECCCCCCHHHcEEEECCCCeEEE
Confidence 5789999999999999999999999999999999884321 1 2244445 8889999999999997 888887
Q ss_pred EE
Q 028652 134 ML 135 (206)
Q Consensus 134 ~L 135 (206)
+|
T Consensus 83 ~l 84 (86)
T cd06475 83 EA 84 (86)
T ss_pred Ee
Confidence 76
No 33
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.91 E-value=0.0051 Score=43.82 Aligned_cols=68 Identities=12% Similarity=0.209 Sum_probs=55.9
Q ss_pred CEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCCC--------ceeEEecCCcCcccccCCceEEEcC-CEEEEEEEe
Q 028652 69 EKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQG--------KNYRFTSPRLNQEIVPEKSKVLVKP-TRVVIMLFK 137 (206)
Q Consensus 69 ~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~g--------k~y~l~i~~L~~~I~pe~S~~kv~~-~kIeI~L~K 137 (206)
+.+.|.+.++|+.+++|.|.+.++.|.|....... ..|.-.+ .|-..|+++..+-++.. +.+.|++.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~-~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRY-QLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEE-ECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 57889999999999999999999999998843211 2455555 89999999998999998 899998865
No 34
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=96.90 E-value=0.0065 Score=43.95 Aligned_cols=72 Identities=10% Similarity=0.146 Sum_probs=58.4
Q ss_pred eeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeC---CC-----ceeEEecCCcCcccccCCceEEE-cCCEEEEEE
Q 028652 65 DQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QG-----KNYRFTSPRLNQEIVPEKSKVLV-KPTRVVIML 135 (206)
Q Consensus 65 ~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~---~g-----k~y~l~i~~L~~~I~pe~S~~kv-~~~kIeI~L 135 (206)
..+++.+.|.+.++|+.++++.|++.++.|.|+.... ++ .+|.-.+ .|-..|+++.-+-.+ .++.+.|+|
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~-~LP~~Vd~~~i~A~~~~dGvL~I~~ 84 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRY-RLPSNVDQSAITCSLSADGMLTFSG 84 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEE-ECCCCCChHHeEEEeCCCCEEEEEe
Confidence 4678899999999999999999999999999987421 11 1244344 888999999999998 689999998
Q ss_pred Ee
Q 028652 136 FK 137 (206)
Q Consensus 136 ~K 137 (206)
.|
T Consensus 85 PK 86 (86)
T cd06497 85 PK 86 (86)
T ss_pred cC
Confidence 76
No 35
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=96.83 E-value=0.0075 Score=43.29 Aligned_cols=72 Identities=7% Similarity=0.175 Sum_probs=58.4
Q ss_pred eeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEe--CCC---ceeEEecCCcCcccccCCceEEE-cCCEEEEEEEe
Q 028652 65 DQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHD--VQG---KNYRFTSPRLNQEIVPEKSKVLV-KPTRVVIMLFK 137 (206)
Q Consensus 65 ~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~--~~g---k~y~l~i~~L~~~I~pe~S~~kv-~~~kIeI~L~K 137 (206)
..+++.+.|.+.++|+.+++|+|.+..+.|+|+... ..+ ..|.-.+ .|-..|+++.-+-.+ ..+.+.|++.+
T Consensus 4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~-~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKC-QLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEE-ECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 457788999999999999999999999999998842 122 2455555 889999999999997 78899998863
No 36
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=96.74 E-value=0.0095 Score=42.91 Aligned_cols=72 Identities=4% Similarity=0.103 Sum_probs=58.0
Q ss_pred eCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeC---CCc-----eeEEecCCcCcccccCCceEEEc-CCEEEEEEE
Q 028652 66 QDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QGK-----NYRFTSPRLNQEIVPEKSKVLVK-PTRVVIMLF 136 (206)
Q Consensus 66 Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~---~gk-----~y~l~i~~L~~~I~pe~S~~kv~-~~kIeI~L~ 136 (206)
-+++.+.|.+.++|+.++++.|.+..+.|.|+.... ++. +|.-.+ .|-..|+++.-+-+.. ++.+.|+|-
T Consensus 4 ~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~-~LP~~vd~~~i~A~~~~dGvL~I~lP 82 (84)
T cd06498 4 LEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKY-RIPADVDPLTITSSLSPDGVLTVCGP 82 (84)
T ss_pred eCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEE-ECCCCCChHHcEEEeCCCCEEEEEEe
Confidence 457788999999999999999999999999988431 111 244444 8889999999999996 899999998
Q ss_pred eC
Q 028652 137 KA 138 (206)
Q Consensus 137 K~ 138 (206)
|+
T Consensus 83 k~ 84 (84)
T cd06498 83 RK 84 (84)
T ss_pred CC
Confidence 74
No 37
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=96.57 E-value=0.026 Score=40.85 Aligned_cols=73 Identities=12% Similarity=0.241 Sum_probs=54.6
Q ss_pred eeeeeC-CCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCC----C----------ceeEEecCCcCcccccCCceEEE
Q 028652 62 FSWDQD-NEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ----G----------KNYRFTSPRLNQEIVPEKSKVLV 126 (206)
Q Consensus 62 y~W~Qt-~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~----g----------k~y~l~i~~L~~~I~pe~S~~kv 126 (206)
++=+++ ++...|.+.+||+.+++|.|.+..+.|.|...... + ..|.-.+ .|-..|+++ ....
T Consensus 3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~-~LP~~vd~~--~A~~ 79 (90)
T cd06470 3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSF-NLADHVKVK--GAEL 79 (90)
T ss_pred eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEE-ECCCCceEC--eeEE
Confidence 444565 48999999999999999999999999999863210 1 2344444 777788875 6788
Q ss_pred cCCEEEEEEEe
Q 028652 127 KPTRVVIMLFK 137 (206)
Q Consensus 127 ~~~kIeI~L~K 137 (206)
.++.+.|+|.+
T Consensus 80 ~~GvL~I~l~~ 90 (90)
T cd06470 80 ENGLLTIDLER 90 (90)
T ss_pred eCCEEEEEEEC
Confidence 88999998863
No 38
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=96.57 E-value=0.013 Score=41.92 Aligned_cols=71 Identities=7% Similarity=0.108 Sum_probs=56.3
Q ss_pred eCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeC---CC-----ceeEEecCCcCcccccCCceEEE-cCCEEEEEEE
Q 028652 66 QDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QG-----KNYRFTSPRLNQEIVPEKSKVLV-KPTRVVIMLF 136 (206)
Q Consensus 66 Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~---~g-----k~y~l~i~~L~~~I~pe~S~~kv-~~~kIeI~L~ 136 (206)
.+++.+.|.+.++|+.+++|.|.+..+.|.|+.... ++ .+|.-.+ .|-..|+++.-+-.+ .++.+.|++-
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~-~LP~~vd~~~i~A~~~~dGvL~I~~P 82 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRY-RLPPGVDPAAITSSLSADGVLTISGP 82 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEE-ECCCCcChHHeEEEECCCCEEEEEec
Confidence 467788999999999999999999999999988431 11 2244444 888899999888888 5889999886
Q ss_pred e
Q 028652 137 K 137 (206)
Q Consensus 137 K 137 (206)
|
T Consensus 83 K 83 (83)
T cd06478 83 R 83 (83)
T ss_pred C
Confidence 5
No 39
>PRK10743 heat shock protein IbpA; Provisional
Probab=96.56 E-value=0.027 Score=44.38 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=61.1
Q ss_pred cceeeee-CCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeC---CCc----------eeEEecCCcCcccccCCceEE
Q 028652 60 GSFSWDQ-DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QGK----------NYRFTSPRLNQEIVPEKSKVL 125 (206)
Q Consensus 60 ~~y~W~Q-t~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~---~gk----------~y~l~i~~L~~~I~pe~S~~k 125 (206)
+.++-++ +++.+.|.+.++|+.+++|.|.+.++.|+|+.... .+. .|.-.+ .|-..|+++. -+
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~-~LP~~Vd~~~--A~ 111 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKF-QLAENIHVRG--AN 111 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEE-ECCCCcccCc--CE
Confidence 5688884 89999999999999999999999999999987421 111 233344 7888999983 77
Q ss_pred EcCCEEEEEEEeC
Q 028652 126 VKPTRVVIMLFKA 138 (206)
Q Consensus 126 v~~~kIeI~L~K~ 138 (206)
..++-+.|+|-|.
T Consensus 112 ~~dGVL~I~lPK~ 124 (137)
T PRK10743 112 LVNGLLYIDLERV 124 (137)
T ss_pred EeCCEEEEEEeCC
Confidence 8899999999996
No 40
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=96.06 E-value=0.069 Score=42.34 Aligned_cols=76 Identities=13% Similarity=0.230 Sum_probs=59.3
Q ss_pred cceeeee-CCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeC---CCc----------eeEEecCCcCcccccCCceEE
Q 028652 60 GSFSWDQ-DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QGK----------NYRFTSPRLNQEIVPEKSKVL 125 (206)
Q Consensus 60 ~~y~W~Q-t~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~---~gk----------~y~l~i~~L~~~I~pe~S~~k 125 (206)
+.++=++ +++.+.|.+.++|+.+++|.|.+..+.|+|+.... .+. .|.-.+ .|-..|+++ .-+
T Consensus 33 P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f-~LP~~vd~~--~A~ 109 (142)
T PRK11597 33 PPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSF-TLAENMEVS--GAT 109 (142)
T ss_pred CcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEE-ECCCCcccC--cCE
Confidence 4466666 46789999999999999999999999999988421 111 244434 777889987 578
Q ss_pred EcCCEEEEEEEeC
Q 028652 126 VKPTRVVIMLFKA 138 (206)
Q Consensus 126 v~~~kIeI~L~K~ 138 (206)
..++-+.|+|-|.
T Consensus 110 ~~nGVL~I~lPK~ 122 (142)
T PRK11597 110 FVNGLLHIDLIRN 122 (142)
T ss_pred EcCCEEEEEEecc
Confidence 8899999999986
No 41
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=96.05 E-value=0.044 Score=39.37 Aligned_cols=70 Identities=10% Similarity=0.174 Sum_probs=55.0
Q ss_pred CCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeC---CC-----ceeEEecCCcCcccccCCceEEEc-CCEEEEEEEe
Q 028652 67 DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QG-----KNYRFTSPRLNQEIVPEKSKVLVK-PTRVVIMLFK 137 (206)
Q Consensus 67 t~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~---~g-----k~y~l~i~~L~~~I~pe~S~~kv~-~~kIeI~L~K 137 (206)
.++...|.+.++|+.+++|.|++..+.|.|+.... .+ .+|.-.+ .|-..|+++.-+-+.. ++.+.|+|-|
T Consensus 5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~-~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTY-ILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEE-ECCCCCChhhEEEEecCCCEEEEEecC
Confidence 45677899999999999999999999999988431 12 1233344 7888999999999996 8899998754
No 42
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=95.75 E-value=0.055 Score=39.11 Aligned_cols=69 Identities=10% Similarity=0.183 Sum_probs=53.0
Q ss_pred eCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeC-----CC-------ceeEEecCCcCcccccCCceEEE-cCCEEE
Q 028652 66 QDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV-----QG-------KNYRFTSPRLNQEIVPEKSKVLV-KPTRVV 132 (206)
Q Consensus 66 Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~-----~g-------k~y~l~i~~L~~~I~pe~S~~kv-~~~kIe 132 (206)
...+.+.|.+.++|+.+++|.|.+..+.|.|+.... ++ ..|.-.+ .|-..|+++.-.-.+ .++.+.
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~-~LP~~Vd~~~i~A~~~~dGvL~ 82 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREA-QLPEHVDPEAVTCSLSPSGHLH 82 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEE-ECCCCcChHHeEEEeCCCceEE
Confidence 345678899999999999999999999999988421 11 1233344 788899999888888 677887
Q ss_pred EEE
Q 028652 133 IML 135 (206)
Q Consensus 133 I~L 135 (206)
|.+
T Consensus 83 I~~ 85 (87)
T cd06481 83 IRA 85 (87)
T ss_pred EEc
Confidence 765
No 43
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=94.60 E-value=0.43 Score=41.90 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=55.8
Q ss_pred CCCEEEEEEEecCC-CCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcC--CEEEEEEE
Q 028652 67 DNEKVKIYISLEGV-VQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKP--TRVVIMLF 136 (206)
Q Consensus 67 t~~~V~I~I~lk~v-~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~--~kIeI~L~ 136 (206)
....+.|.|.++++ +..++.+++.++.|.|.+.+ ..|.|.+ .|-.+|+++.++-+... ..+.|+|.
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~---~~y~L~l-~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPK---PKYRLDL-PLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCC---CceEEEc-cCCCcccCCCceEEEccCCCEEEEEEE
Confidence 36889999999999 88999999999999998843 2699988 99999999988877754 57888873
No 44
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=94.24 E-value=0.4 Score=34.44 Aligned_cols=68 Identities=6% Similarity=0.062 Sum_probs=51.2
Q ss_pred eCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeC---CCc-----eeEEecCCcCcccccCCceEEE-cCCEEEEE
Q 028652 66 QDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV---QGK-----NYRFTSPRLNQEIVPEKSKVLV-KPTRVVIM 134 (206)
Q Consensus 66 Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~---~gk-----~y~l~i~~L~~~I~pe~S~~kv-~~~kIeI~ 134 (206)
.+++...|.+.++|+.+++|.|.+..+.|+|+.... +.. .|.-.+ .|-..|+++..+-+. ..+-+.|.
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~-~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQY-QLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEE-ECCCCcchheEEEEEcCCCEEEEE
Confidence 456788899999999999999999999999998421 111 233334 788899998888776 56766664
No 45
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=93.95 E-value=0.33 Score=35.23 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=49.9
Q ss_pred CCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeC-----CC-cee-----EEecCCcCcccccCCceEEEcCC-EEEE
Q 028652 67 DNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDV-----QG-KNY-----RFTSPRLNQEIVPEKSKVLVKPT-RVVI 133 (206)
Q Consensus 67 t~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~-----~g-k~y-----~l~i~~L~~~I~pe~S~~kv~~~-kIeI 133 (206)
.++.+.|.+.+||+.+++|.|.+..+.|+|+.... .+ ..| .=.+ .|-..|+++.-+-+..++ .|.|
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f-~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEF-SLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEE-ECCCCcChHHcEEEEcCCCEEEE
Confidence 46788999999999999999999999999998431 11 122 2233 777889999888888776 5555
No 46
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=91.02 E-value=2 Score=35.30 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=49.8
Q ss_pred CCC-EEEEEEEecCCCCCC-cEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCCEEEEEEEeCCC
Q 028652 67 DNE-KVKIYISLEGVVQDK-MEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASK 140 (206)
Q Consensus 67 t~~-~V~I~I~lk~v~~e~-v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~ 140 (206)
.++ .+.|...|+||..++ +.|.+......|.+.. ++ .|.-.+ .|-.+ .++.-.+.+.++-+||.|.+.++
T Consensus 99 ~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~-~~-~~~krv-~L~~~-~~e~~~~t~nNgILEIri~~~~~ 170 (177)
T PF05455_consen 99 RDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRV-GE-KYLKRV-ALPWP-DPEITSATFNNGILEIRIRRTEE 170 (177)
T ss_pred cCCCcEEEEEeCCCCCcccceeeEeecCCceEEEec-CC-ceEeeE-ecCCC-ccceeeEEEeCceEEEEEeecCC
Confidence 444 688888999997777 8888886655555532 22 343334 56666 46666888999999999999765
No 47
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=90.04 E-value=2.7 Score=30.74 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=49.2
Q ss_pred CEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCC-----C---ceeEEecCCcCcccccCCceEEEc-CCEEEEEE
Q 028652 69 EKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ-----G---KNYRFTSPRLNQEIVPEKSKVLVK-PTRVVIML 135 (206)
Q Consensus 69 ~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~-----g---k~y~l~i~~L~~~I~pe~S~~kv~-~~kIeI~L 135 (206)
+.-.|.+.+.+..++++.|...++.|.|+..... | ..|.-.+ .|-..|+++.-+-.+. ++.+.|.+
T Consensus 15 ~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~-~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 15 EPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKI-QLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEE-ECCCCCCchhEEEEeCCCCeEEEEc
Confidence 3445888999999999999999999999884321 1 2344444 7888999998888887 56776653
No 48
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=44.90 E-value=33 Score=24.69 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=23.4
Q ss_pred CCCCchhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 028652 160 ERDPMAGIMDLMKNMYEEGDDEMKRTIAKAWTD 192 (206)
Q Consensus 160 ~~dp~~~l~~lfkkiY~~gDde~kRam~Ks~~E 192 (206)
..||...-..+++.+.+-||+|.|++|+-.++.
T Consensus 45 ~vdP~N~EerlLkELW~va~e~Eq~~LA~lmvK 77 (81)
T PF11588_consen 45 NVDPKNPEERLLKELWDVADEEEQHALANLMVK 77 (81)
T ss_dssp -----SHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 457877788999999999999999999988764
No 49
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=44.56 E-value=41 Score=22.01 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=27.5
Q ss_pred chhHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 028652 164 MAGIMDLMKNMYEEGDDEMKRTIAKAWTDARSG 196 (206)
Q Consensus 164 ~~~l~~lfkkiY~~gDde~kRam~Ks~~ES~~~ 196 (206)
.+.|.+++.+=+..-+.|+|+++.+|..==+.+
T Consensus 17 p~~L~~lL~~~~~~L~p~lR~~lv~aLiLLRnK 49 (52)
T PF08158_consen 17 PQELIDLLRNHHTVLDPDLRMKLVKALILLRNK 49 (52)
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHHcc
Confidence 346889999999999999999999998754443
No 50
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=39.87 E-value=39 Score=22.31 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=20.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHH
Q 028652 166 GIMDLMKNMYEEGDDEMKRTIAKA 189 (206)
Q Consensus 166 ~l~~lfkkiY~~gDde~kRam~Ks 189 (206)
.|..+|..+|..+|+++++.|.+-
T Consensus 30 ~l~~~~~~~~~~~~~~~~~kv~rl 53 (64)
T PF04818_consen 30 VLPDAFAHAYKNVDPEVRKKVQRL 53 (64)
T ss_dssp CHHHHHHHHCCCS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 478899999999999999988764
No 51
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=38.84 E-value=52 Score=23.32 Aligned_cols=48 Identities=15% Similarity=0.403 Sum_probs=25.8
Q ss_pred EEEEEEecCCCCCCcEEEEee-eEEEEEEEeCCCce-eEEecCCcCcccc
Q 028652 71 VKIYISLEGVVQDKMEAEFKQ-WSFDVKFHDVQGKN-YRFTSPRLNQEIV 118 (206)
Q Consensus 71 V~I~I~lk~v~~e~v~v~f~~-~sl~v~i~~~~gk~-y~l~i~~L~~~I~ 118 (206)
|.+.+.+.|...+.+.+.|.. ..++|.+.+.+|+. |.+.-+..|-.+.
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal 51 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQAL 51 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhhee
Confidence 667788888778889999966 47899998666644 6665555555443
No 52
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=35.61 E-value=25 Score=23.21 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=18.2
Q ss_pred hccCCcccchHHHHHHHHHHhhh
Q 028652 10 FVNIPLVASVLPLIKYSLTSILQ 32 (206)
Q Consensus 10 ~a~R~~v~~v~~~l~~~~~~le~ 32 (206)
.+.++.+....+.|+.||.++|.
T Consensus 30 L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 30 LAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HccchHHHHHHHHHHHHHHHHhc
Confidence 34567777788999999999984
No 53
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=33.48 E-value=1.2e+02 Score=24.29 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=33.7
Q ss_pred EEEEEecCCCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCCceEEEcCCEE--EEEEE
Q 028652 72 KIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRV--VIMLF 136 (206)
Q Consensus 72 ~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kI--eI~L~ 136 (206)
++++|+|+. .+..+-|++++++|-+.+ ++.- ..--.-+.++.+.|++.++.| |+++-
T Consensus 71 t~t~yiKNt--G~~~~~fd~~sitVliDG----~iv~--~a~~~~~~~~gs~i~l~PG~Vg~ev~vn 129 (154)
T COG3354 71 TYTFYIKNT--GSDSIAFDNTSITVLIDG----NIVT--PAYVTFTSVNGSSIRLSPGQVGREVTVN 129 (154)
T ss_pred EEEEEEecC--CCcccccCCCeEEEEEcC----cEec--cceEEEEecCCCeeEecCCceeeEEEec
Confidence 456677765 455678999999998854 1111 011122456778888776643 44443
No 54
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.47 E-value=1.3e+02 Score=27.89 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=39.9
Q ss_pred EEEEEecCCCCCCcEEEEeeeEEEEEEE--eCCCceeEEecCCcCcccccCCceEEEcCCEEEEEEEeCCCC
Q 028652 72 KIYISLEGVVQDKMEAEFKQWSFDVKFH--DVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKASKG 141 (206)
Q Consensus 72 ~I~I~lk~v~~e~v~v~f~~~sl~v~i~--~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~~~~ 141 (206)
++.|+++|...-.+..++.+. |.|.+. ++.-..|.. +|-.+..|+.-++.+.+.++.+++.|+...
T Consensus 71 tV~Vtl~G~ns~~~~~~~~~d-FkV~ADLt~a~~Gt~ev---kl~ve~l~~~ltvsV~P~~~~Vti~kk~tk 138 (403)
T COG4856 71 TVTVTLKGPNSIVLKSEKPED-FKVVADLTHAGVGTHEV---KLQVEGLPDGLTVSVNPEKATVTIEKKVTK 138 (403)
T ss_pred EEEEEEeCCcceeeeeecCcC-eEEEEEhhhcCCCceEe---eeEeecCCCCceEEEccceeEEEEeeeeEE
Confidence 345555554333333444433 555552 122223443 677788888889999999999999887654
No 55
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=32.52 E-value=1.4e+02 Score=21.70 Aligned_cols=15 Identities=7% Similarity=0.375 Sum_probs=5.7
Q ss_pred eeCCCEEEEEEEecC
Q 028652 65 DQDNEKVKIYISLEG 79 (206)
Q Consensus 65 ~Qt~~~V~I~I~lk~ 79 (206)
.++.+.++|++.+.+
T Consensus 45 ~~npNYLFv~L~i~~ 59 (88)
T PF09087_consen 45 TDNPNYLFVYLDISD 59 (88)
T ss_dssp -SSTTEEEEEEEE-T
T ss_pred cCCCCEEEEEEecCC
Confidence 344444444444443
No 56
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=30.54 E-value=3e+02 Score=22.39 Aligned_cols=71 Identities=10% Similarity=0.212 Sum_probs=51.8
Q ss_pred CCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCC-----C---ceeEEecCCcCcccccCCceEEEcCC-EEEEEEEeC
Q 028652 68 NEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQ-----G---KNYRFTSPRLNQEIVPEKSKVLVKPT-RVVIMLFKA 138 (206)
Q Consensus 68 ~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~-----g---k~y~l~i~~L~~~I~pe~S~~kv~~~-kIeI~L~K~ 138 (206)
.+...|.+.+....++.+.|+..++.|.|...... | ++|.=.+ .|-..++|+.-+-.+.++ .+.|.-.|.
T Consensus 71 ~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y-~LP~~vdp~~V~S~LS~dGvLtI~ap~~ 149 (173)
T KOG3591|consen 71 KDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKY-LLPEDVDPTSVTSTLSSDGVLTIEAPKP 149 (173)
T ss_pred CCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEe-cCCCCCChhheEEeeCCCceEEEEccCC
Confidence 44566777888888999999999999999884321 1 3344444 888999999888778764 677776664
Q ss_pred C
Q 028652 139 S 139 (206)
Q Consensus 139 ~ 139 (206)
.
T Consensus 150 ~ 150 (173)
T KOG3591|consen 150 P 150 (173)
T ss_pred C
Confidence 4
No 57
>PF09829 DUF2057: Uncharacterized protein conserved in bacteria (DUF2057); InterPro: IPR018635 The proteins in this entry are functionally uncharacterised.
Probab=28.99 E-value=53 Score=26.65 Aligned_cols=25 Identities=12% Similarity=0.331 Sum_probs=21.2
Q ss_pred chhHHHHHHHHhcCCCHHHHHHHHH
Q 028652 164 MAGIMDLMKNMYEEGDDEMKRTIAK 188 (206)
Q Consensus 164 ~~~l~~lfkkiY~~gDde~kRam~K 188 (206)
+.....|++..|..+|+++|++.++
T Consensus 164 ~~~~~~~Lq~wy~qAs~~eRk~F~~ 188 (189)
T PF09829_consen 164 ESEALQMLQYWYLQASKEERKAFLK 188 (189)
T ss_pred cccHHHHHHHHHHhCCHHHHHHHhc
Confidence 4456799999999999999998764
No 58
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=28.68 E-value=1.1e+02 Score=16.96 Aligned_cols=26 Identities=8% Similarity=0.321 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 028652 167 IMDLMKNMYEEGDDEMKRTIAKAWTD 192 (206)
Q Consensus 167 l~~lfkkiY~~gDde~kRam~Ks~~E 192 (206)
|+..+.++..|-+++.|.+...+..+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~ 26 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGA 26 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 35567788899999999998887653
No 59
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=25.89 E-value=46 Score=22.34 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=24.6
Q ss_pred CCCCCCCCCCchhHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 028652 154 KPNLDKERDPMAGIMDLMKNMYEEGDDEMKRTIAKAWTDA 193 (206)
Q Consensus 154 kp~~d~~~dp~~~l~~lfkkiY~~gDde~kRam~Ks~~ES 193 (206)
.|+||..-==.++|-.++=| +|..+ |++...|.++
T Consensus 21 hP~WDQ~Rl~~aALa~FL~Q---nG~~~--r~~~r~Yl~~ 55 (57)
T PF10929_consen 21 HPNWDQYRLFQAALAGFLLQ---NGCQD--RAVTRVYLEN 55 (57)
T ss_pred CCCchHHHHHHHHHHHHHHH---cCchh--HHHHHHHHHh
Confidence 58898754446777666533 77777 9998888764
No 60
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=25.81 E-value=2.4e+02 Score=20.41 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=31.4
Q ss_pred CEEEEEEEecCCCCCCcEEEEeeeEEEEE-EEeCCCceeEEecCCcCcccccCCceEEEcCCEEEEEEEeC
Q 028652 69 EKVKIYISLEGVVQDKMEAEFKQWSFDVK-FHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPTRVVIMLFKA 138 (206)
Q Consensus 69 ~~V~I~I~lk~v~~e~v~v~f~~~sl~v~-i~~~~gk~y~l~i~~L~~~I~pe~S~~kv~~~kIeI~L~K~ 138 (206)
..+-|-|+-+++. +.+|.++...+.|. +...++.||.|.-.++- ...| +.+.|.+.+.
T Consensus 14 ~~LQLmvyG~nI~--~~~v~i~~~gV~i~~v~~~~npNYLFv~L~i~-~akp---------g~~~i~~~~~ 72 (88)
T PF09087_consen 14 PELQLMVYGKNIA--SAEVSISYPGVTIKKVVKTDNPNYLFVYLDIS-DAKP---------GTFTINFKKG 72 (88)
T ss_dssp -EEEEEEESTTGG--GSEEEE-BTTEEEEEEEE-SSTTEEEEEEEE--T--S---------EEEEEEEEET
T ss_pred CcEEEEEecCCcc--cCEEEEeCCCeEEEEEEecCCCCEEEEEEecC-CCCC---------cEEEEEEEcC
Confidence 3577777777773 45566654545543 45567889998644443 3333 4555555554
No 61
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.20 E-value=43 Score=31.30 Aligned_cols=82 Identities=16% Similarity=0.075 Sum_probs=55.6
Q ss_pred cceeeeeCCCEEEEEEEecCCCCCCcEEEEeeeEEEEEEEeCCCceeEEecCCcCcccccCC---ceEEEcCCEEEEEEE
Q 028652 60 GSFSWDQDNEKVKIYISLEGVVQDKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEK---SKVLVKPTRVVIMLF 136 (206)
Q Consensus 60 ~~y~W~Qt~~~V~I~I~lk~v~~e~v~v~f~~~sl~v~i~~~~gk~y~l~i~~L~~~I~pe~---S~~kv~~~kIeI~L~ 136 (206)
++|.-.|.+++++|.|+.+-.....+.+...+..+.+.+. +|-+.+ .+-+.+..+. -+|-.+++.+.|.+-
T Consensus 4 p~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~~~-----pyflrl-~~p~~~~~d~~~n~s~d~kd~~~~vK~~ 77 (466)
T KOG3247|consen 4 PQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFSAG-----PYFLRL-AGPGMVEDDARPNASYDAKDGYAHVKVP 77 (466)
T ss_pred ceeeeeecCceEEEEeeccccchhccchhhHhhhhhhccc-----hhHHhh-cCcchhhhhccccCccccccceeEEeec
Confidence 5788899999999999998555666666666666666652 343322 4444443332 245667789999999
Q ss_pred eCCCC-Cccccc
Q 028652 137 KASKG-NWLDLQ 147 (206)
Q Consensus 137 K~~~~-~W~~L~ 147 (206)
|..++ +.+.|.
T Consensus 78 K~~~~e~F~~Ld 89 (466)
T KOG3247|consen 78 KFHPGEHFSDLD 89 (466)
T ss_pred CCCccccccchh
Confidence 98776 677664
No 62
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=23.62 E-value=1e+02 Score=24.96 Aligned_cols=29 Identities=17% Similarity=0.452 Sum_probs=24.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 028652 165 AGIMDLMKNMYEEGDDEMKRTIAKAWTDA 193 (206)
Q Consensus 165 ~~l~~lfkkiY~~gDde~kRam~Ks~~ES 193 (206)
..-+.||.-++..+||+.||.|+..+..-
T Consensus 120 ~naiaLinAL~~kA~~~~r~~i~~~l~~k 148 (160)
T PF11841_consen 120 TNAIALINALFLKADDSKRKEIAETLSQK 148 (160)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44678888999999999999999987653
No 63
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=22.67 E-value=60 Score=20.90 Aligned_cols=20 Identities=45% Similarity=0.466 Sum_probs=15.0
Q ss_pred HhcCCCHHHHHHHHHHHHHh
Q 028652 174 MYEEGDDEMKRTIAKAWTDA 193 (206)
Q Consensus 174 iY~~gDde~kRam~Ks~~ES 193 (206)
|+...|+|.|+++++..++.
T Consensus 7 ~~~g~~~e~K~~l~~~it~~ 26 (60)
T PF01361_consen 7 IPEGRTAEQKRELAEAITDA 26 (60)
T ss_dssp EESTS-HHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHH
Confidence 45667899999999887764
No 64
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=22.02 E-value=2.1e+02 Score=19.73 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=16.3
Q ss_pred EEE-eeeEEEEEEEeCCCceeEEecCCcCccc
Q 028652 87 AEF-KQWSFDVKFHDVQGKNYRFTSPRLNQEI 117 (206)
Q Consensus 87 v~f-~~~sl~v~i~~~~gk~y~l~i~~L~~~I 117 (206)
++| .++..+|.+.+.+|+.+.+.+..-.+.|
T Consensus 48 ve~~~~g~yev~~~~~dG~~~ev~vD~~tG~V 79 (83)
T PF13670_consen 48 VEFDDDGCYEVEARDKDGKKVEVYVDPATGEV 79 (83)
T ss_pred EEEcCCCEEEEEEEECCCCEEEEEEcCCCCeE
Confidence 455 3335666655556666666554333333
No 65
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=20.67 E-value=96 Score=19.88 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=17.3
Q ss_pred HhcCCCHHHHHHHHHHHHHhCC
Q 028652 174 MYEEGDDEMKRTIAKAWTDARS 195 (206)
Q Consensus 174 iY~~gDde~kRam~Ks~~ES~~ 195 (206)
|+.+-++|+||++.++.+++=.
T Consensus 8 ~~~Grs~eqk~~l~~~it~~l~ 29 (61)
T PRK02220 8 LIEGRTEEQLKALVKDVTAAVS 29 (61)
T ss_pred EcCCCCHHHHHHHHHHHHHHHH
Confidence 3456689999999999888543
No 66
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=20.37 E-value=98 Score=20.15 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=17.9
Q ss_pred HhcCCCHHHHHHHHHHHHHhCCCC
Q 028652 174 MYEEGDDEMKRTIAKAWTDARSGK 197 (206)
Q Consensus 174 iY~~gDde~kRam~Ks~~ES~~~~ 197 (206)
|..+-++|+||+++++.+++-..-
T Consensus 8 ~~~Grs~EqK~~L~~~it~a~~~~ 31 (60)
T PRK02289 8 LFEGRSQEQKNALAREVTEVVSRI 31 (60)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHH
Confidence 345669999999999988864433
No 67
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=20.33 E-value=2e+02 Score=23.65 Aligned_cols=80 Identities=11% Similarity=0.268 Sum_probs=51.6
Q ss_pred cceee--eeCCCEEEEEEEecCCCCCCcEEEEeeeE-EEEEEEeC-------CCc----------eeEEecCCcCccccc
Q 028652 60 GSFSW--DQDNEKVKIYISLEGVVQDKMEAEFKQWS-FDVKFHDV-------QGK----------NYRFTSPRLNQEIVP 119 (206)
Q Consensus 60 ~~y~W--~Qt~~~V~I~I~lk~v~~e~v~v~f~~~s-l~v~i~~~-------~gk----------~y~l~i~~L~~~I~p 119 (206)
.+..| ..+.+...+.+.++|+..++++|.+.+.. +.+..... .+. .|.-.+ .|-..++.
T Consensus 83 ~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~-~lPenv~~ 161 (196)
T KOG0710|consen 83 ARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRF-ELPENVDV 161 (196)
T ss_pred ccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeee-cCCccccH
Confidence 35678 68888888999999999999999999885 66654211 111 122222 55555555
Q ss_pred CCceEEEcCCEEEEEEEeCCC
Q 028652 120 EKSKVLVKPTRVVIMLFKASK 140 (206)
Q Consensus 120 e~S~~kv~~~kIeI~L~K~~~ 140 (206)
+.-+..+.++-+.|++.|...
T Consensus 162 d~ikA~~~nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 162 DEIKAEMENGVLTVVVPKLEP 182 (196)
T ss_pred HHHHHHhhCCeEEEEEecccc
Confidence 555555566666666666543
Done!