BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028653
(206 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SVL6|CRPM2_ARATH Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis
thaliana GN=COR413PM2 PE=2 SV=1
Length = 203
Score = 280 bits (715), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 137/206 (66%), Positives = 167/206 (81%), Gaps = 4/206 (1%)
Query: 2 MGQKSYLATRAGGV-TSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASF 60
MG+ YLA + V T L++SDM+EL VAAKKL D KL GLGFG +FL+++ASF
Sbjct: 1 MGRMDYLAMKTDDVDTVALVNSDMEELKVAAKKLFS---DVSKLGGLGFGVSFLKFLASF 57
Query: 61 AAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRH 120
AAIYLLILDRTNW+T +LT LLIPYIF SLPS+IFN GDVGKWIAF+A++LRLFFP+H
Sbjct: 58 AAIYLLILDRTNWKTKMLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKH 117
Query: 121 FPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTK 180
FPDWLEMP +LILL+VV+P A +IR +WIG VI L I CYLLQEHIRASGGFRNSFT+
Sbjct: 118 FPDWLEMPGSLILLLVVSPHFLAHHIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFTQ 177
Query: 181 AHGVSNSVGIIILVVYPAWALVLYIL 206
GVSN++GII+L+VYP WAL++ ++
Sbjct: 178 PRGVSNTLGIILLLVYPVWALIVRVM 203
>sp|O23164|CRPM4_ARATH Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis
thaliana GN=At4g37220 PE=2 SV=2
Length = 202
Score = 261 bits (668), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 123/205 (60%), Positives = 157/205 (76%), Gaps = 3/205 (1%)
Query: 2 MGQKSYLATRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFA 61
MG+ +LA + ++LI+SDM E V AAKKL D L G+GFGT+ L+W AS
Sbjct: 1 MGRGEFLAMKTEENAANLINSDMNEFVAAAKKLVK---DVGMLGGVGFGTSVLQWAASIF 57
Query: 62 AIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRHF 121
AIYLLILDRTNW+T +LT LL+PYIFF+LPS+IF F GD GKWIA IAII+RLFFP+ F
Sbjct: 58 AIYLLILDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIVRLFFPKEF 117
Query: 122 PDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKA 181
P+WLE+P ALIL++VV+PSL A +R SW+G VICL IACYL EHI+ASGGF+NSFT+
Sbjct: 118 PEWLEIPVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKASGGFKNSFTQK 177
Query: 182 HGVSNSVGIIILVVYPAWALVLYIL 206
+G+SN++GI+ L+VYP W + +I
Sbjct: 178 NGISNTIGIVALLVYPVWTIFFHIF 202
>sp|Q9XIM7|CRPM1_ARATH Cold-regulated 413 plasma membrane protein 1 OS=Arabidopsis
thaliana GN=COR413PM1 PE=1 SV=1
Length = 197
Score = 249 bits (636), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/189 (67%), Positives = 155/189 (82%), Gaps = 3/189 (1%)
Query: 14 GVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNW 73
G +I SD EL +AAK LA H A L GLGFGT+ LEWVAS AAIYLL+LDRTNW
Sbjct: 11 GTLKAMIGSDFNELTIAAKNLATH---AFTLTGLGFGTSVLEWVASIAAIYLLVLDRTNW 67
Query: 74 RTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALIL 133
+TN+LT LLIPYIFFSLPSLIF +FRG++GKWIAF+A++++LFFP+H ++LE+P AL+L
Sbjct: 68 KTNMLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVVQLFFPKHAREYLELPVALVL 127
Query: 134 LIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKAHGVSNSVGIIIL 193
L VVAP+L A R SWIG+ ICL I CYLLQEHIRASGGFRN+FTKA+G+SN+VGII L
Sbjct: 128 LAVVAPNLIAGTFRDSWIGLAICLGIGCYLLQEHIRASGGFRNAFTKANGISNTVGIICL 187
Query: 194 VVYPAWALV 202
VV+P WAL+
Sbjct: 188 VVFPVWALI 196
>sp|O64834|CRPM3_ARATH Cold-regulated 413 plasma membrane protein 3 OS=Arabidopsis
thaliana GN=At2g23680 PE=2 SV=1
Length = 189
Score = 144 bits (363), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/151 (49%), Positives = 99/151 (65%), Gaps = 4/151 (2%)
Query: 51 TTFLEWVASFAAIYLLILDRTNWR--TNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAF 108
T FL W+AS A++L+ILD+T W+ NI+ LL PY+F SLP +IF V R VGKWIA
Sbjct: 28 TLFLRWLASIVAVFLMILDQTKWKYSNNIMASLLAPYLFSSLPIVIFQVLRNGVGKWIAL 87
Query: 109 IAIILRLFFPRHFPDWLEMPAALILLIVVAPSLFASYIRSS--WIGVVICLAIACYLLQE 166
+ +ILRLF P HF + LE+P A ILLIVV PS + R + G +CL + YL+ +
Sbjct: 88 LTVILRLFLPNHFHESLEIPGATILLIVVTPSDIGAIFRDDLRYTGGDVCLLTSFYLINK 147
Query: 167 HIRASGGFRNSFTKAHGVSNSVGIIILVVYP 197
H +A GG +NSFT+ V+ S+ + IL VYP
Sbjct: 148 HTKACGGIKNSFTQKDKVTYSICLWILFVYP 178
>sp|F4I1G5|CRIM2_ARATH Cold-regulated 413 inner membrane protein 2, chloroplastic
OS=Arabidopsis thaliana GN=COR413IM2 PE=1 SV=1
Length = 226
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 76/142 (53%), Gaps = 8/142 (5%)
Query: 54 LEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIIL 113
L+W+++ + + L+ T I ++P P I + +G+ G W AF+A++
Sbjct: 86 LQWISTISCVALMFARGTG----IHKSFVVPLFALQAPMGIVSWMKGEYGIWAAFLALLT 141
Query: 114 RLFFPRHFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGG 173
RLFF FP LE+P +LL++VAP S IR G ++ LAI+C+L +H +G
Sbjct: 142 RLFF--SFPVELELPFIALLLVIVAPYQVMS-IRGKQEGAILSLAISCFLAFQHFSRAGT 198
Query: 174 FRNSFTKAHGVSNSVGIIILVV 195
+ +F + + V +V II + V
Sbjct: 199 LQKAFDQ-NSVLATVAIIGVTV 219
>sp|Q94AL8|CRIM1_ARATH Cold-regulated 413 inner membrane protein 1, chloroplastic
OS=Arabidopsis thaliana GN=COR413IM1 PE=1 SV=1
Length = 225
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 7/127 (5%)
Query: 54 LEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIIL 113
L+W+++ + + L++ T I +++P PS I +G+ G W AF+A+I
Sbjct: 85 LQWISTISCLALMLARGTG----IHKSVVVPLFALHAPSSIVAWIKGEYGVWAAFLALIA 140
Query: 114 RLFFPRHFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGG 173
RLFF FP LE+P +LL++VAP + IR G +I +AI+ +L +H +G
Sbjct: 141 RLFFT--FPGELELPFIALLLVIVAPYQVMN-IRGKQEGAIIAIAISGFLAFQHFSRAGS 197
Query: 174 FRNSFTK 180
++ K
Sbjct: 198 LEKAYEK 204
>sp|Q8NX64|ISDF_STAAW Probable heme-iron transport system permease protein IsdF
OS=Staphylococcus aureus (strain MW2) GN=isdF PE=2 SV=2
Length = 322
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 40 DAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNV-- 97
D I+ R +GF W+ A++L G+++P++ L + V
Sbjct: 210 DDIQARSIGFNIDRYRWLTGLLAVFLASATVAIVGQLAFLGIIVPHVVRKLVGGNYRVLI 269
Query: 98 -FRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSL 141
F +G W+ +A +L R LE+PA IL+IV P L
Sbjct: 270 PFSTVIGAWLLLVADLLG----RVIQPPLEIPANAILMIVGGPML 310
>sp|Q6GA81|ISDF_STAAS Probable heme-iron transport system permease protein IsdF
OS=Staphylococcus aureus (strain MSSA476) GN=isdF PE=3
SV=1
Length = 322
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 40 DAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNV-- 97
D I+ R +GF W+ A++L G+++P++ L + V
Sbjct: 210 DDIQARSIGFNIDRYRWLTGLLAVFLASATVAIVGQLAFLGIIVPHVVRKLVGGNYRVLI 269
Query: 98 -FRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSL 141
F +G W+ +A +L R LE+PA IL+IV P L
Sbjct: 270 PFSTVIGAWLLLVADLLG----RVIQPPLEIPANAILMIVGGPML 310
>sp|Q01555|COX1_TRIRU Cytochrome c oxidase subunit 1 OS=Trichophyton rubrum GN=COX1 PE=3
SV=1
Length = 528
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 87 FFSLPSLI---FNVFRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSLFA 143
+F +P L+ +++F G V WI F+ + L L FP+HF MP I P FA
Sbjct: 394 YFWIPKLLGLSYDLFAGKVHFWILFVGVNLTL-FPQHFLGLQGMPRR----IGDYPDAFA 448
Query: 144 SYIRSSWIGVVICLAIACYLLQ 165
+ S G ++ + Y L
Sbjct: 449 GWNLISSFGSIVSVVATWYFLN 470
>sp|Q6GHV2|ISDF_STAAR Probable heme-iron transport system permease protein IsdF
OS=Staphylococcus aureus (strain MRSA252) GN=isdF PE=3
SV=1
Length = 322
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 40 DAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNV-- 97
D I+ R +GF W+ A++L G+++P++ L + V
Sbjct: 210 DDIQARSIGFNIDRYRWLTGLLAVFLASATVAIVGQLAFLGIIVPHVVRKLVGGNYRVLI 269
Query: 98 -FRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSL 141
F +G W+ +A +L R LE+PA IL+IV P L
Sbjct: 270 PFSTVIGAWLLLVADLLG----RVIQPPLEIPANAILMIVGGPML 310
>sp|Q7A651|ISDF_STAAN Probable heme-iron transport system permease protein IsdF
OS=Staphylococcus aureus (strain N315) GN=isdF PE=3 SV=2
Length = 322
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 40 DAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNV-- 97
D I+ R +GF W+ A++L G+++P++ L + V
Sbjct: 210 DDIQARSIGFNIDRYRWLTGLLAVFLASATVAIVGQLAFLGIIVPHVVRKLVGGNYRVLI 269
Query: 98 -FRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSL 141
F +G W+ +A +L R LE+PA IL+IV P L
Sbjct: 270 PFSTVIGAWLLLVADLLG----RVIQPPLEIPANAILMIVGGPML 310
>sp|Q99UX0|ISDF_STAAM Probable heme-iron transport system permease protein IsdF
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=isdF PE=3 SV=2
Length = 322
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 40 DAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNV-- 97
D I+ R +GF W+ A++L G+++P++ L + V
Sbjct: 210 DDIQARSIGFNIDRYRWLTGLLAVFLASATVAIVGQLAFLGIIVPHVVRKLVGGNYRVLI 269
Query: 98 -FRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSL 141
F +G W+ +A +L R LE+PA IL+IV P L
Sbjct: 270 PFSTVIGAWLLLVADLLG----RVIQPPLEIPANAILMIVGGPML 310
>sp|A6QG35|ISDF_STAAE Probable heme-iron transport system permease protein IsdF
OS=Staphylococcus aureus (strain Newman) GN=isdF PE=2
SV=1
Length = 322
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 40 DAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNV-- 97
D I+ R +GF W+ A++L G+++P++ L + V
Sbjct: 210 DDIQARSIGFNIDRYRWLTGLLAVFLASATVAIVGQLAFLGIIVPHVVRKLVGGNYRVLI 269
Query: 98 -FRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSL 141
F +G W+ +A +L R LE+PA IL+IV P L
Sbjct: 270 PFSTVIGAWLLLVADLLG----RVIQPPLEIPANAILMIVGGPML 310
>sp|Q5HGV0|ISDF_STAAC Probable heme-iron transport system permease protein IsdF
OS=Staphylococcus aureus (strain COL) GN=isdF PE=3 SV=2
Length = 322
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 40 DAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNV-- 97
D I+ R +GF W+ A++L G+++P++ L + V
Sbjct: 210 DDIQARSIGFNIDRYRWLTGLLAVFLASATVAIVGQLAFLGIIVPHVVRKLVGGNYRVLI 269
Query: 98 -FRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSL 141
F +G W+ +A +L R LE+PA IL+IV P L
Sbjct: 270 PFSTVIGAWLLLVADLLG----RVIQPPLEIPANAILMIVGGPML 310
>sp|Q2FHU7|ISDF_STAA3 Probable heme-iron transport system permease protein IsdF
OS=Staphylococcus aureus (strain USA300) GN=isdF PE=3
SV=2
Length = 322
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 40 DAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNV-- 97
D I+ R +GF W+ A++L G+++P++ L + V
Sbjct: 210 DDIQARSIGFNIDRYRWLTGLLAVFLASATVAIVGQLAFLGIIVPHVVRKLVGGNYRVLI 269
Query: 98 -FRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSL 141
F +G W+ +A +L R LE+PA IL+IV P L
Sbjct: 270 PFSTVIGAWLLLVADLLG----RVIQPPLEIPANAILMIVGGPML 310
>sp|A7X154|ISDF_STAA1 Probable heme-iron transport system permease protein IsdF
OS=Staphylococcus aureus (strain Mu3 / ATCC 700698)
GN=isdF PE=3 SV=2
Length = 322
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 40 DAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNV-- 97
D I+ R +GF W+ A++L G+++P++ L + V
Sbjct: 210 DDIQARSIGFNIDRYRWLTGLLAVFLASATVAIVGQLAFLGIIVPHVVRKLVGGNYRVLI 269
Query: 98 -FRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSL 141
F +G W+ +A +L R LE+PA IL+IV P L
Sbjct: 270 PFSTVIGAWLLLVADLLG----RVIQPPLEIPANAILMIVGGPML 310
>sp|Q09428|ABCC8_HUMAN ATP-binding cassette sub-family C member 8 OS=Homo sapiens GN=ABCC8
PE=1 SV=6
Length = 1581
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 15/94 (15%)
Query: 81 LLIPYIFFSLPSL--IFNVFRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVA 138
+L P FF L I N F D +H P LE + LL V A
Sbjct: 1105 ILAPMRFFETTPLGSILNRFSSDCNT------------IDQHIPSTLECLSRSTLLCVSA 1152
Query: 139 PSLFASYIRSSWIGVVICLAIACYLLQEHIRASG 172
++ SY+ ++ ++ LAI CY +Q++ R +
Sbjct: 1153 LAVI-SYVTPVFLVALLPLAIVCYFIQKYFRVAS 1185
>sp|Q09427|ABCC8_CRICR ATP-binding cassette sub-family C member 8 OS=Cricetus cricetus
GN=ABCC8 PE=1 SV=3
Length = 1582
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 15/94 (15%)
Query: 81 LLIPYIFFSLPSL--IFNVFRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVA 138
+L P FF L I N F D +H P LE + LL V A
Sbjct: 1106 ILAPMRFFETTPLGSILNRFSSDCNT------------IDQHIPSTLECLSRSTLLCVSA 1153
Query: 139 PSLFASYIRSSWIGVVICLAIACYLLQEHIRASG 172
++ SY+ ++ ++ LA+ CY +Q++ R +
Sbjct: 1154 LTVI-SYVTPVFLVALLPLAVVCYFIQKYFRVAS 1186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.144 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,152,016
Number of Sequences: 539616
Number of extensions: 2754565
Number of successful extensions: 9395
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 9366
Number of HSP's gapped (non-prelim): 41
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.9 bits)