Query 028653
Match_columns 206
No_of_seqs 69 out of 71
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 14:53:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05562 WCOR413: Cold acclima 100.0 6.6E-89 1.4E-93 574.5 6.4 183 8-193 1-186 (187)
2 COG3594 NolL Fucose 4-O-acetyl 48.0 18 0.0004 34.1 3.2 120 77-198 70-214 (343)
3 PF03188 Cytochrom_B561: Eukar 43.3 88 0.0019 23.8 5.8 56 147-204 39-94 (137)
4 PF10167 NEP: Uncharacterised 42.6 18 0.00039 29.2 2.0 13 159-171 30-42 (118)
5 smart00665 B561 Cytochrome b-5 34.8 1.3E+02 0.0028 23.1 5.6 55 147-203 38-92 (129)
6 smart00805 AGTRAP Angiotensin 28.5 66 0.0014 27.8 3.2 30 144-173 85-117 (159)
7 PF02322 Cyto_ox_2: Cytochrome 27.9 2.2E+02 0.0048 26.0 6.7 49 116-166 275-323 (328)
8 KOG4544 Uncharacterized conser 25.9 98 0.0021 26.4 3.7 56 18-89 30-87 (144)
9 PF13231 PMT_2: Dolichyl-phosp 25.5 2.8E+02 0.0061 20.5 7.9 119 58-199 34-157 (159)
10 COG5416 Uncharacterized integr 25.0 2.1E+02 0.0046 23.0 5.3 77 88-176 10-96 (98)
11 PRK10481 hypothetical protein; 24.9 35 0.00077 30.1 1.0 31 22-52 166-196 (224)
12 PF12404 DUF3663: Peptidase ; 24.6 39 0.00084 25.9 1.0 32 21-52 34-65 (77)
13 PLN02595 cytochrome c oxidase 24.1 65 0.0014 26.0 2.2 19 149-167 48-67 (102)
14 PF11466 Doppel: Prion-like pr 23.9 63 0.0014 21.1 1.7 16 156-171 9-24 (30)
15 PF06305 DUF1049: Protein of u 23.4 76 0.0017 21.7 2.3 39 121-171 12-50 (68)
16 PF10166 DUF2368: Uncharacteri 22.4 1.2E+02 0.0027 24.9 3.7 38 51-89 47-84 (131)
17 KOG2877 sn-1,2-diacylglycerol 22.4 5.5E+02 0.012 25.0 8.4 61 34-114 120-195 (389)
18 COG3008 PqiB Paraquat-inducibl 22.0 76 0.0016 32.0 2.7 35 151-185 25-60 (553)
19 KOG4523 Uncharacterized conser 21.8 63 0.0014 27.6 1.9 13 159-171 30-42 (157)
20 COG4828 Predicted membrane pro 21.7 1.1E+02 0.0023 25.2 3.1 95 51-170 11-107 (113)
21 PRK11909 cobalt transport prot 21.2 1.3E+02 0.0029 26.4 3.8 44 102-145 78-127 (230)
22 PRK10406 alpha-ketoglutarate t 21.0 5.9E+02 0.013 22.6 9.5 16 67-82 86-101 (432)
23 PRK09548 PTS system ascorbate- 20.2 2.5E+02 0.0055 28.6 5.9 93 51-157 134-240 (602)
No 1
>PF05562 WCOR413: Cold acclimation protein WCOR413; InterPro: IPR008892 This family consists of several WCOR413-like plant cold acclimation proteins.
Probab=100.00 E-value=6.6e-89 Score=574.52 Aligned_cols=183 Identities=70% Similarity=1.181 Sum_probs=179.2
Q ss_pred ceeecC---ccchHhHHhhHHHHHHHHHHhhcchhhhHhhhcCCCchhhHHHHHHHHHHHHHHHhCCCcccchhhhhhhh
Q 028653 8 LATRAG---GVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIP 84 (206)
Q Consensus 8 l~m~~~---~~~~~~i~sd~~~l~~aa~kL~~h~~~a~~l~g~g~~t~~lqWiasiaAi~LLildrTnwkTni~tslLVP 84 (206)
|+|||| +.++++|+||+||++.|||||++| |++++|+|+||+++||++++||+|||++|||||||||+||||||
T Consensus 1 l~mkt~~~~~~~~~~l~sd~~~l~~aa~kl~~~---a~~~~~~~~~t~~lqWias~aAi~LlildrtnwkTniltslLVP 77 (187)
T PF05562_consen 1 LAMKTDSSSEFAAALLSSDLQELGMAAKKLASH---AICLGSLGFGTSFLQWIASIAAIYLLILDRTNWKTNILTSLLVP 77 (187)
T ss_pred CCccccccchhhhhhhccCHHHHHHHHHhhhcc---eeeeccccccHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHH
Confidence 689994 677899999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hhhccCccchhhhhcCCcchHHHHHHHHHHhhcCCCCCCccchhhHHHHHHhhchhhHHHhhhcchHHHHHHHHHHHHHH
Q 028653 85 YIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLL 164 (206)
Q Consensus 85 yi~lslPs~vf~~~rGe~G~WiAFlavv~RLFfp~~fP~~LElP~a~iLLvvvAP~~~~~~~R~s~~G~vI~L~Ia~YLl 164 (206)
|+|+|+|+++|||+|||||+||||+|+++|||||||||||||||++++||+||||+|+|+++||+|+|++||++|||||+
T Consensus 78 yi~lslPs~if~~~rGe~G~WiAFlavv~RLFfp~~fP~~LElP~a~iLLivvaP~~~~~~~R~~~~G~vi~l~I~~YLl 157 (187)
T PF05562_consen 78 YIFLSLPSVIFNWFRGEYGKWIAFLAVVLRLFFPRHFPGELELPGALILLIVVAPSQIANTFRGSQIGAVICLAIACYLL 157 (187)
T ss_pred HHHHhCcHHHHHHHhccccHHHHHHHHHHHHhCcccCCchhhcchhhheeeEeCchHHHHhccCCeeehhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcccccccccchhhHHHHHH
Q 028653 165 QEHIRASGGFRNSFTKAHGVSNSVGIIIL 193 (206)
Q Consensus 165 ~qHi~~~GG~r~aF~q~~gi~~Ti~Ii~l 193 (206)
|||||++||+||||+|+|||+||+||+++
T Consensus 158 ~qHi~~~Gg~r~aF~~~~gis~t~~I~ll 186 (187)
T PF05562_consen 158 QQHIRASGGFRNAFTQGSGISNTIGIILL 186 (187)
T ss_pred HHHHHhcCChhhhhhcccccceeeEEEEe
Confidence 99999999999999999999999999875
No 2
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=48.03 E-value=18 Score=34.09 Aligned_cols=120 Identities=23% Similarity=0.314 Sum_probs=66.8
Q ss_pred hhhhhhhhhhhccCccchhhhhcCCcc---------------hHHH-HHHHHHHhhcCCCCC----CccchhhHHHHHHh
Q 028653 77 ILTGLLIPYIFFSLPSLIFNVFRGDVG---------------KWIA-FIAIILRLFFPRHFP----DWLEMPAALILLIV 136 (206)
Q Consensus 77 i~tslLVPyi~lslPs~vf~~~rGe~G---------------~WiA-Flavv~RLFfp~~fP----~~LElP~a~iLLvv 136 (206)
-.++|+|||+++++=..++..++.... .|+. +..-+.=+|+.|.++ -+.-.+.+...++.
T Consensus 70 k~~tLivPyi~f~li~~I~~~~~~~~~~~~~l~~~~~~~~l~~~v~~~FWf~~llfit~l~~~~~a~~~~~~~s~~~~~l 149 (343)
T COG3594 70 KARTLIVPYIFFFLIYSILYFLLRKFNSELTLNFILPGWELWFLVILFFWFLPLLFITKLIYNLIAVWLAVSVSLIILIL 149 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhcccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Confidence 346899999999998888877766555 2222 222233334433344 45566666666655
Q ss_pred hc----hhhHHHhhhcchHHHHHHHHHHHHHHHHHHHhhC-CCcccccccccchhhHHHHHHHHHHH
Q 028653 137 VA----PSLFASYIRSSWIGVVICLAIACYLLQEHIRASG-GFRNSFTKAHGVSNSVGIIILVVYPA 198 (206)
Q Consensus 137 vA----P~~~~~~~R~s~~G~vI~L~Ia~YLl~qHi~~~G-G~r~aF~q~~gi~~Ti~Ii~l~v~Pv 198 (206)
++ |..+-..-| ++.+-=. ...+.+..+.|+=-.| .-+..+-+.+..++...++++.+.|-
T Consensus 150 ~gf~~~~~~~~~~~~-~~~~~P~-~l~~~~~a~~~f~~~~~l~~~~~~~~~~~~~~a~vi~l~~~~~ 214 (343)
T COG3594 150 VGFFFIPLSLGSFSR-TLVFFPF-FLLGTLFAKLHFWFGGLLRTYKGLRVNIKSFLAAVIFLAVGLA 214 (343)
T ss_pred HHHHHHHHHHHhhhh-hhccCcH-HHHHHHHHHHHHHHhhhhheeeeehhhHHHHHHHHHHHHHHHH
Confidence 43 222222111 1111111 1223445556665554 34556666777788888888887773
No 3
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=43.29 E-value=88 Score=23.79 Aligned_cols=56 Identities=9% Similarity=0.160 Sum_probs=42.3
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHhhCCCcccccccccchhhHHHHHHHHHHHHHHHHH
Q 028653 147 RSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKAHGVSNSVGIIILVVYPAWALVLY 204 (206)
Q Consensus 147 R~s~~G~vI~L~Ia~YLl~qHi~~~GG~r~aF~q~~gi~~Ti~Ii~l~v~Pvw~l~~~ 204 (206)
+.-|.-+.+|.++|.++.+...+..| ++.|+..|++.-.+..++.++-|+.-++.+
T Consensus 39 ~~lq~l~~~~~~~G~~~~~~~~~~~~--~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~ 94 (137)
T PF03188_consen 39 WILQVLALVFAIIGFVAIFINKNRNG--KPHFKSWHSILGLATFVLALLQPLLGFFRF 94 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccC--CCCCCCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 44467888999999999988766553 588888898877777777777777666544
No 4
>PF10167 NEP: Uncharacterised conserved protein; InterPro: IPR019320 This entry represents the uncharacterised protein family UPF0402. It contains a characteristic NEP sequence motif. Their function is not known.
Probab=42.56 E-value=18 Score=29.23 Aligned_cols=13 Identities=54% Similarity=0.853 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhh
Q 028653 159 IACYLLQEHIRAS 171 (206)
Q Consensus 159 Ia~YLl~qHi~~~ 171 (206)
+|.|=+|||+|++
T Consensus 30 lgLYrlQeHvrks 42 (118)
T PF10167_consen 30 LGLYRLQEHVRKS 42 (118)
T ss_pred HHHHHHHHHHHHH
Confidence 6899999999986
No 5
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=34.82 E-value=1.3e+02 Score=23.09 Aligned_cols=55 Identities=11% Similarity=-0.028 Sum_probs=41.1
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHhhCCCcccccccccchhhHHHHHHHHHHHHHHHH
Q 028653 147 RSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKAHGVSNSVGIIILVVYPAWALVL 203 (206)
Q Consensus 147 R~s~~G~vI~L~Ia~YLl~qHi~~~GG~r~aF~q~~gi~~Ti~Ii~l~v~Pvw~l~~ 203 (206)
+.-|.-+.+|.++|..+.+...+..| ++.|+..|++.-.+.+++..+-|+.-++.
T Consensus 38 ~~lq~~a~~~~~~g~~~~~~~~~~~~--~~~~~s~H~~lGl~~~~l~~~Q~~~G~~~ 92 (129)
T smart00665 38 VVLQILALVLGVIGLLAIFISHNESG--IANFYSLHSWLGLAAFVLAGLQWLSGFLR 92 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccC--CCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 55567788889999999888766554 56799999887777777777777765554
No 6
>smart00805 AGTRAP Angiotensin II, type I receptor-associated protein. This family consists of several angiotensin II, type I receptor-associated protein (AGTRAP) sequences. AGTRAP is known to interact specifically with the C-terminal cytoplasmic region of the angiotensin II type 1 (AT(1)) receptor to regulate different aspects of AT(1) receptor physiology. The function of this family is unclear.
Probab=28.55 E-value=66 Score=27.76 Aligned_cols=30 Identities=23% Similarity=0.332 Sum_probs=0.0
Q ss_pred HhhhcchHHHHHHHH---HHHHHHHHHHHhhCC
Q 028653 144 SYIRSSWIGVVICLA---IACYLLQEHIRASGG 173 (206)
Q Consensus 144 ~~~R~s~~G~vI~L~---Ia~YLl~qHi~~~GG 173 (206)
++.|=+.+=+++.|+ ++|+|+++|+|.-||
T Consensus 85 d~~~fs~gmaIlnLiLrP~S~~lly~~~~eRGG 117 (159)
T smart00805 85 DTGRFGVGMAILSLLLKPLSCCLVYHMYRERGG 117 (159)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHccC
No 7
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=27.89 E-value=2.2e+02 Score=26.02 Aligned_cols=49 Identities=10% Similarity=0.086 Sum_probs=22.9
Q ss_pred hcCCCCCCccchhhHHHHHHhhchhhHHHhhhcchHHHHHHHHHHHHHHHH
Q 028653 116 FFPRHFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQE 166 (206)
Q Consensus 116 Ffp~~fP~~LElP~a~iLLvvvAP~~~~~~~R~s~~G~vI~L~Ia~YLl~q 166 (206)
.||+..|...+--.++.+-=..||..-.+ --.+...+.-.++-.|..+.
T Consensus 275 ~~P~ilps~~~~~~slTi~~aass~~tL~--~m~~~~~i~lpivl~y~~~~ 323 (328)
T PF02322_consen 275 LFPYILPSSIDPAYSLTIWNAASSPYTLK--FMLIVALIGLPIVLPYQAWL 323 (328)
T ss_pred hCceEeecCCCCCCCccHHhhcCCHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 46777776654333444444444443222 11233334444455555544
No 8
>KOG4544 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.90 E-value=98 Score=26.38 Aligned_cols=56 Identities=23% Similarity=0.382 Sum_probs=34.2
Q ss_pred HhHHhhHHHHHHHHHHhhcchhhhHhhhcCCCchhhHHHHHHHHHH--HHHHHhCCCcccchhhhhhhhhhhcc
Q 028653 18 DLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFAAI--YLLILDRTNWRTNILTGLLIPYIFFS 89 (206)
Q Consensus 18 ~~i~sd~~~l~~aa~kL~~h~~~a~~l~g~g~~t~~lqWiasiaAi--~LLildrTnwkTni~tslLVPyi~ls 89 (206)
+++-.-+++=..-|=++|.| .+.|+|++.+.+. |++-+....-| .++.|+|.+=++
T Consensus 30 qiim~~l~~~rq~A~~Ia~~-------------RE~f~w~~~f~~~avv~laa~~~~~K---r~~~liPIvPL~ 87 (144)
T KOG4544|consen 30 QIIMAHLQERRQIAFKIAEE-------------REKFNWIACFGSLAVVLLAASSFHHK---RLLHLIPIVPLA 87 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHh---ccchheechhhH
Confidence 34444555555667778888 9999999987654 34433332222 257777776544
No 9
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=25.50 E-value=2.8e+02 Score=20.49 Aligned_cols=119 Identities=17% Similarity=0.273 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhCCCcccchhhhhhhhhhhccCccchhhhhcCC-cch----HHHHHHHHHHhhcCCCCCCccchhhHHH
Q 028653 58 ASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGD-VGK----WIAFIAIILRLFFPRHFPDWLEMPAALI 132 (206)
Q Consensus 58 asiaAi~LLildrTnwkTni~tslLVPyi~lslPs~vf~~~rGe-~G~----WiAFlavv~RLFfp~~fP~~LElP~a~i 132 (206)
.+...+|.+..+..|.+ .+++.-.+....|..+..-.... ... +...+-...|..-.+....+ .+
T Consensus 34 ~~~~~~y~i~r~~~~~~----~a~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 103 (159)
T PF13231_consen 34 LTLLLIYLIARRLFGRR----AALIAALLLALSPMFIFYSASARPDMLLLFFFLLALYAFYRYIKSKKWRWW------IL 103 (159)
T ss_pred HHHHHHHHHHHHHCCch----HHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcchHHH------HH
Confidence 34445566666666655 44455555555665444333221 222 44444455555554442211 11
Q ss_pred HHHhhchhhHHHhhhcchHHHHHHHHHHHHHHHHHHHhhCCCcccccccccchhhHHHHHHHHHHHH
Q 028653 133 LLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKAHGVSNSVGIIILVVYPAW 199 (206)
Q Consensus 133 LLvvvAP~~~~~~~R~s~~G~vI~L~Ia~YLl~qHi~~~GG~r~aF~q~~gi~~Ti~Ii~l~v~Pvw 199 (206)
..+..+=... .|.+..-.++ ++.+|++.+ ||.+++......++.+.++...|.|
T Consensus 104 ~~l~~~l~~~---~k~~~~~~~~--~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~p~l 157 (159)
T PF13231_consen 104 AGLLLGLAFL---TKYTFLLLIP--ALLLYLLLS--------RRRLKRKIFILIAVLIALLVFLPWL 157 (159)
T ss_pred HHHHHHHHHH---HHHHHHHHHH--HHHHHHHHH--------hHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 3555433333 344488877 4445554334446677777777765
No 10
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=25.04 E-value=2.1e+02 Score=22.97 Aligned_cols=77 Identities=18% Similarity=0.278 Sum_probs=50.2
Q ss_pred ccCccchhhhhcCCcchHHH-HHHHHHHhhcC---------CCCCCccchhhHHHHHHhhchhhHHHhhhcchHHHHHHH
Q 028653 88 FSLPSLIFNVFRGDVGKWIA-FIAIILRLFFP---------RHFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICL 157 (206)
Q Consensus 88 lslPs~vf~~~rGe~G~WiA-Flavv~RLFfp---------~~fP~~LElP~a~iLLvvvAP~~~~~~~R~s~~G~vI~L 157 (206)
.+-|.+...-.|+.+..|++ ++..++=+-|- +.+++-.|+|..+++|-.+ ..|..|..
T Consensus 10 ~g~~~v~~~r~~~~w~vi~~gilillLllifav~Nt~~V~~~~lfg~~~~PLilvil~s~------------v~G~Li~~ 77 (98)
T COG5416 10 PGEPAVVRKRMKGQWTVIIVGILILLLLLIFAVINTDSVEFNYLFGQWELPLILVILGAA------------VVGALIAM 77 (98)
T ss_pred CCCCcchhhhccceeeHHHHHHHHHHHHHHHHHhccCceEEEeecchhhhhHHHHHHHHH------------HHHHHHHH
Confidence 35566777778888888886 55554444331 3467779999888776432 35666666
Q ss_pred HHHHHHHHHHHHhhCCCcc
Q 028653 158 AIACYLLQEHIRASGGFRN 176 (206)
Q Consensus 158 ~Ia~YLl~qHi~~~GG~r~ 176 (206)
..+.-=..||=+...-.|+
T Consensus 78 ~~~~~Ri~~lrr~~krlr~ 96 (98)
T COG5416 78 FAGIARILQLRREVKRLRA 96 (98)
T ss_pred HHhHHHHHHHHHHHHHHhh
Confidence 6666667777777655543
No 11
>PRK10481 hypothetical protein; Provisional
Probab=24.86 E-value=35 Score=30.08 Aligned_cols=31 Identities=35% Similarity=0.509 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHhhcchhhhHhhhcCCCchh
Q 028653 22 SDMKELVVAAKKLADHSVDAIKLRGLGFGTT 52 (206)
Q Consensus 22 sd~~~l~~aa~kL~~h~~~a~~l~g~g~~t~ 52 (206)
.+-+++..++++|..+.+|++++++.|+++.
T Consensus 166 ~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~ 196 (224)
T PRK10481 166 GSEEELIDAGKELLDQGADVIVLDCLGYHQR 196 (224)
T ss_pred CCHHHHHHHHHHhhcCCCCEEEEeCCCcCHH
Confidence 4557899999999999999999999999874
No 12
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=24.56 E-value=39 Score=25.90 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=26.1
Q ss_pred HhhHHHHHHHHHHhhcchhhhHhhhcCCCchh
Q 028653 21 SSDMKELVVAAKKLADHSVDAIKLRGLGFGTT 52 (206)
Q Consensus 21 ~sd~~~l~~aa~kL~~h~~~a~~l~g~g~~t~ 52 (206)
+.|++.+..|||||-+..+..+.|.|=|..-+
T Consensus 34 ~~~l~~IQrAaRkLd~qGI~~V~L~G~~W~lE 65 (77)
T PF12404_consen 34 GDDLRAIQRAARKLDGQGIKNVALAGEGWDLE 65 (77)
T ss_pred CcchHHHHHHHHHHhhCCCceEEEecCCcCHH
Confidence 46799999999999999888888877665543
No 13
>PLN02595 cytochrome c oxidase subunit VI protein
Probab=24.09 E-value=65 Score=25.97 Aligned_cols=19 Identities=37% Similarity=0.955 Sum_probs=14.2
Q ss_pred chHHHHHHHHHHHHHH-HHH
Q 028653 149 SWIGVVICLAIACYLL-QEH 167 (206)
Q Consensus 149 s~~G~vI~L~Ia~YLl-~qH 167 (206)
|..+++.|+++.+|++ +||
T Consensus 48 S~~~v~~c~~lnaY~l~~eH 67 (102)
T PLN02595 48 TYLGIASCTALAVYVLSKGH 67 (102)
T ss_pred hHHHhHHHHHHHHHHhhhcc
Confidence 3457899999999966 444
No 14
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=23.95 E-value=63 Score=21.08 Aligned_cols=16 Identities=44% Similarity=0.712 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 028653 156 CLAIACYLLQEHIRAS 171 (206)
Q Consensus 156 ~L~Ia~YLl~qHi~~~ 171 (206)
+++|.|-|++.|.+..
T Consensus 9 ~lAi~c~LL~s~Ls~V 24 (30)
T PF11466_consen 9 WLAIVCVLLFSHLSSV 24 (30)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhhHH
Confidence 6889999999998754
No 15
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.37 E-value=76 Score=21.69 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=25.5
Q ss_pred CCCccchhhHHHHHHhhchhhHHHhhhcchHHHHHHHHHHHHHHHHHHHhh
Q 028653 121 FPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRAS 171 (206)
Q Consensus 121 fP~~LElP~a~iLLvvvAP~~~~~~~R~s~~G~vI~L~Ia~YLl~qHi~~~ 171 (206)
++.+.++|.++++++..+ .|++++.+++..-..+|=++.
T Consensus 12 ~~~~~~~pl~l~il~~f~------------~G~llg~l~~~~~~~~~r~~~ 50 (68)
T PF06305_consen 12 LFGQFPLPLGLLILIAFL------------LGALLGWLLSLPSRLRLRRRI 50 (68)
T ss_pred EeeeccchHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 556667999988887653 577777766665555554443
No 16
>PF10166 DUF2368: Uncharacterised conserved protein (DUF2368); InterPro: IPR019319 This family is conserved from nematodes to humans. The function is not known.
Probab=22.39 E-value=1.2e+02 Score=24.87 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhhcc
Q 028653 51 TTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFS 89 (206)
Q Consensus 51 t~~lqWiasiaAi~LLildrTnwkTni~tslLVPyi~ls 89 (206)
.+.+.|.+++.++..+.+--.--|+. ...+++|++-++
T Consensus 47 RE~~~w~~~f~~l~~~~~~~~~~k~K-~~~~l~PlvPL~ 84 (131)
T PF10166_consen 47 RELFKWFASFYALAAVGLIAGAIKRK-NPLFLIPLVPLT 84 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CcchhhhHHHHH
Confidence 99999997776654433322111221 236777776554
No 17
>KOG2877 consensus sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid transport and metabolism]
Probab=22.37 E-value=5.5e+02 Score=25.03 Aligned_cols=61 Identities=36% Similarity=0.577 Sum_probs=34.5
Q ss_pred hhcchhhhHhh-------h-cCCCch----hhHHHHHHHHHHHHHHHhCCCcc---cchhhhhhhhhhhccCccchhhhh
Q 028653 34 LADHSVDAIKL-------R-GLGFGT----TFLEWVASFAAIYLLILDRTNWR---TNILTGLLIPYIFFSLPSLIFNVF 98 (206)
Q Consensus 34 L~~h~~~a~~l-------~-g~g~~t----~~lqWiasiaAi~LLildrTnwk---Tni~tslLVPyi~lslPs~vf~~~ 98 (206)
|-+|++|++-. + -.|+|+ .++.|.++..--| + ..|. |+.+ .++++
T Consensus 120 LFDHG~DS~stvf~~l~~~s~~~~G~~~~~~~~~~~~~~~~FY---~--ahWe~Y~Tg~L---------------~l~~~ 179 (389)
T KOG2877|consen 120 LFDHGCDSISTVFVTLAVCSAFGLGTSPYWLFLFQFASLVLFY---L--AHWEEYHTGTL---------------RLGRF 179 (389)
T ss_pred hhcccchhHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHH---H--cchhheecceE---------------EEEEE
Confidence 56999998732 2 145553 3455554444333 3 4576 3333 45677
Q ss_pred cCCcchHHHHHHHHHH
Q 028653 99 RGDVGKWIAFIAIILR 114 (206)
Q Consensus 99 rGe~G~WiAFlavv~R 114 (206)
.|+-|.+...+..++-
T Consensus 180 ~gtEgq~~i~~~~l~T 195 (389)
T KOG2877|consen 180 DGTEGQVSIIIVHLLT 195 (389)
T ss_pred eccchhHHHHHHHHHH
Confidence 8888887766554443
No 18
>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]
Probab=21.99 E-value=76 Score=32.03 Aligned_cols=35 Identities=26% Similarity=0.538 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC-Ccccccccccch
Q 028653 151 IGVVICLAIACYLLQEHIRASGG-FRNSFTKAHGVS 185 (206)
Q Consensus 151 ~G~vI~L~Ia~YLl~qHi~~~GG-~r~aF~q~~gi~ 185 (206)
.==+|.|+||.+|+++|++..|= +.--|+.+.||.
T Consensus 25 llPivAl~igawL~~~~~~~~G~~Itl~f~saeGIe 60 (553)
T COG3008 25 LLPIVALLIGAWLLFQHVQDRGPEITLTFESAEGIE 60 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEecCccccc
Confidence 44478999999999999999963 445566666663
No 19
>KOG4523 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.79 E-value=63 Score=27.59 Aligned_cols=13 Identities=54% Similarity=0.869 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhh
Q 028653 159 IACYLLQEHIRAS 171 (206)
Q Consensus 159 Ia~YLl~qHi~~~ 171 (206)
+|.|-+|||+|++
T Consensus 30 l~LY~iQeHirna 42 (157)
T KOG4523|consen 30 LALYRIQEHIRNA 42 (157)
T ss_pred HHHHHHHHHHHhh
Confidence 5789999999987
No 20
>COG4828 Predicted membrane protein [Function unknown]
Probab=21.69 E-value=1.1e+02 Score=25.24 Aligned_cols=95 Identities=23% Similarity=0.297 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhhccCccchhhhhcCCcchHHHHHHHHHHhhcCCCCCCccchhhH
Q 028653 51 TTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAA 130 (206)
Q Consensus 51 t~~lqWiasiaAi~LLildrTnwkTni~tslLVPyi~lslPs~vf~~~rGe~G~WiAFlavv~RLFfp~~fP~~LElP~a 130 (206)
-+.+.|+.-+.++.+.+.- +|| .+..-+ ..=-.-|+-.++=+|-|.|.|+||- +-++. .+
T Consensus 11 l~if~~~fe~v~~l~IiyG--glr-a~~~if---l~e~~k~p~~~~~iRkelt~ki~fg---LEf~i-----------~a 70 (113)
T COG4828 11 LEIFAVVFEAVSVLLIIYG--GLR-AVAMIF---LREVHKKPEVYESIRKELTNKIAFG---LEFLI-----------AA 70 (113)
T ss_pred HHHHHHHHHHHHHHHHHHh--HHH-HHHHHH---HHHHhcChhhHHHHHHHHHHHHHHH---HHHHH-----------HH
Confidence 3567788777777544433 466 333323 2445678899999999999999974 22332 67
Q ss_pred HHHHHhhchhhHHHhhhcchHHHH--HHHHHHHHHHHHHHHh
Q 028653 131 LILLIVVAPSLFASYIRSSWIGVV--ICLAIACYLLQEHIRA 170 (206)
Q Consensus 131 ~iLLvvvAP~~~~~~~R~s~~G~v--I~L~Ia~YLl~qHi~~ 170 (206)
-++..+.+|++=-= +..|++ |=.+.+ |.+++.+..
T Consensus 71 dil~T~r~Pt~edL----~~LG~Iv~IRT~Lg-YFL~KEiee 107 (113)
T COG4828 71 DILETARAPTLEDL----SKLGAIVLIRTVLG-YFLSKEIEE 107 (113)
T ss_pred HHHHHHhCccHHHH----HHhhHHHHHHHHHH-HHHHHHHHH
Confidence 78888888876322 223432 334444 555655543
No 21
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=21.21 E-value=1.3e+02 Score=26.41 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=29.2
Q ss_pred cchHHHHHHHHHHhhcCC---CCCCccchhhHHHHHHhhch---hhHHHh
Q 028653 102 VGKWIAFIAIILRLFFPR---HFPDWLEMPAALILLIVVAP---SLFASY 145 (206)
Q Consensus 102 ~G~WiAFlavv~RLFfp~---~fP~~LElP~a~iLLvvvAP---~~~~~~ 145 (206)
+|-|.|+++..+++++-- ..=|+.+++.-.+...++.| +.+-+.
T Consensus 78 lGp~~a~la~~l~lllqal~fg~GGi~~LG~N~l~ma~v~~~~~y~i~r~ 127 (230)
T PRK11909 78 LGPWAAVISISVALVIQALLFGDGGITAIGANCFNMAFVLPFVGYYVYKL 127 (230)
T ss_pred HhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889988888865421 23466888888887767776 444443
No 22
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=21.00 E-value=5.9e+02 Score=22.58 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=11.1
Q ss_pred HHhCCCcccchhhhhh
Q 028653 67 ILDRTNWRTNILTGLL 82 (206)
Q Consensus 67 ildrTnwkTni~tslL 82 (206)
+.||.|.|..+.-+.+
T Consensus 86 l~Dr~Grr~~l~~~~~ 101 (432)
T PRK10406 86 IADKHGRKKSMLISVC 101 (432)
T ss_pred HHHhcCcHHHHHHHHH
Confidence 6999999955444443
No 23
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=20.22 E-value=2.5e+02 Score=28.62 Aligned_cols=93 Identities=19% Similarity=0.281 Sum_probs=56.2
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhhccCccchhhhhc-------------CCcchHHHHHHHHHHhhc
Q 028653 51 TTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFR-------------GDVGKWIAFIAIILRLFF 117 (206)
Q Consensus 51 t~~lqWiasiaAi~LLildrTnwkTni~tslLVPyi~lslPs~vf~~~r-------------Ge~G~WiAFlavv~RLFf 117 (206)
...+-|-++..++.+......+|.+-+..|++.-...--.|.....+.| +.+|.|++ +.+-++|=
T Consensus 134 GH~~~~~a~~~~~v~~~~g~~~~~~ii~~~~~lG~y~~v~pal~~~~~~~iTg~d~faiGH~~~~g~~~s--~~ig~~~G 211 (602)
T PRK09548 134 GHIMFQQAGLIAVFYHVLGASMWETVIYGAVLMALYWGISSNIMNKPTQQVTGGAGFSIGHQQQVASWIA--TKIAPKLG 211 (602)
T ss_pred cHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHhHHHHHhcCCCCeEEeehhhHHHHHH--HHHHHHhC
Confidence 3455566666666665555666766666666666666666666666665 35677876 66677766
Q ss_pred CC-CCCCccchhhHHHHHHhhchhhHHHhhhcchHHHHHHH
Q 028653 118 PR-HFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICL 157 (206)
Q Consensus 118 p~-~fP~~LElP~a~iLLvvvAP~~~~~~~R~s~~G~vI~L 157 (206)
.+ .=.|.+++|-.+= -+||+.+...+..
T Consensus 212 ~k~~stEdiklPk~Ls------------ffrD~~vs~ai~M 240 (602)
T PRK09548 212 DKEDSVDDLKLPKWLH------------IFHDSIVATAIVM 240 (602)
T ss_pred CCcCCHHHhcCCcchh------------HhhhhHHHHHHHH
Confidence 32 3334466665442 2788876655443
Done!