Query 028653
Match_columns 206
No_of_seqs 69 out of 71
Neff 3.0
Searched_HMMs 29240
Date Tue Mar 26 01:03:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f3y_B Voltage-dependent L-typ 28.3 26 0.00089 21.3 1.4 12 160-171 4-15 (26)
2 1bde_A VPR protein; AIDS, HIV, 26.1 36 0.0012 21.9 1.9 27 147-175 3-29 (35)
3 1z65_A PRPLP, prion-like prote 23.6 41 0.0014 21.0 1.7 17 155-171 8-24 (30)
4 2be6_D Voltage-dependent L-typ 21.1 49 0.0017 21.5 1.8 13 158-170 11-23 (37)
5 3dvk_B Voltage-dependent R-typ 17.1 73 0.0025 18.7 1.8 13 159-171 7-19 (23)
6 2g2c_A Putative molybdenum cof 12.0 69 0.0024 24.7 1.0 34 19-52 50-84 (167)
7 3esi_A Uncharacterized protein 11.9 88 0.003 24.1 1.5 20 115-134 31-50 (129)
8 4h4g_A (3R)-hydroxymyristoyl-[ 11.3 90 0.0031 24.2 1.4 19 115-133 54-72 (160)
9 2nx9_A Oxaloacetate decarboxyl 11.1 3.4E+02 0.012 24.8 5.4 39 50-104 341-379 (464)
10 1rqb_A Transcarboxylase 5S sub 11.1 2.7E+02 0.0093 26.2 4.8 38 50-104 359-396 (539)
No 1
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=28.27 E-value=26 Score=21.29 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhh
Q 028653 160 ACYLLQEHIRAS 171 (206)
Q Consensus 160 a~YLl~qHi~~~ 171 (206)
+-||.|+|+|+-
T Consensus 4 at~LIqdyfRkf 15 (26)
T 2f3y_B 4 ATFLIQEYFRKF 15 (26)
T ss_pred hhhhHHHHHHHH
Confidence 579999999974
No 2
>1bde_A VPR protein; AIDS, HIV, viral protein, VPR fragment, helix; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1dsj_A
Probab=26.12 E-value=36 Score=21.92 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=20.2
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHhhCCCc
Q 028653 147 RSSWIGVVICLAIACYLLQEHIRASGGFR 175 (206)
Q Consensus 147 R~s~~G~vI~L~Ia~YLl~qHi~~~GG~r 175 (206)
-|||.|+---.=|---++|-|||. |++
T Consensus 3 GDTw~GveaiiriLQq~Lf~HfR~--GC~ 29 (35)
T 1bde_A 3 GDTWAGVEAIIRILQQLLFIHFRI--GCR 29 (35)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHhc--cCc
Confidence 468888766666677788999987 554
No 3
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=23.61 E-value=41 Score=21.02 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 028653 155 ICLAIACYLLQEHIRAS 171 (206)
Q Consensus 155 I~L~Ia~YLl~qHi~~~ 171 (206)
-+++|.|-|++.|.+..
T Consensus 8 ~wlai~c~LLfs~Ls~v 24 (30)
T 1z65_A 8 WWVAILCMLLASHLSTV 24 (30)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHhhHHHH
Confidence 37899999999998764
No 4
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=21.10 E-value=49 Score=21.54 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHh
Q 028653 158 AIACYLLQEHIRA 170 (206)
Q Consensus 158 ~Ia~YLl~qHi~~ 170 (206)
.-+-||+|+|||+
T Consensus 11 fYatfLIQdyFRk 23 (37)
T 2be6_D 11 FYATFLIQEYFRK 23 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4578999999986
No 5
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=17.09 E-value=73 Score=18.72 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhh
Q 028653 159 IACYLLQEHIRAS 171 (206)
Q Consensus 159 Ia~YLl~qHi~~~ 171 (206)
=|.+|+|+|+|+.
T Consensus 7 YA~llI~d~~r~~ 19 (23)
T 3dvk_B 7 YAAMMIMDYYKQS 19 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4788999999874
No 6
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=11.99 E-value=69 Score=24.70 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=24.5
Q ss_pred hHHhhHHHHHHHHHHhhcchhhhHhh-hcCCCchh
Q 028653 19 LISSDMKELVVAAKKLADHSVDAIKL-RGLGFGTT 52 (206)
Q Consensus 19 ~i~sd~~~l~~aa~kL~~h~~~a~~l-~g~g~~t~ 52 (206)
.+..|.+++.++.++..++..|.+.. ||.|.+..
T Consensus 50 iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g~~~~ 84 (167)
T 2g2c_A 50 VVPEGYDTVVEAIATALKQGARFIITAGGTGIRAK 84 (167)
T ss_dssp EECSSHHHHHHHHHHHHHTTCSEEEEESCCSSSTT
T ss_pred EeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence 45667788888888877644777754 78998743
No 7
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum}
Probab=11.86 E-value=88 Score=24.07 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=17.1
Q ss_pred hhcCCCCCCccchhhHHHHH
Q 028653 115 LFFPRHFPDWLEMPAALILL 134 (206)
Q Consensus 115 LFfp~~fP~~LElP~a~iLL 134 (206)
.||.-|||+.--+|+.+++=
T Consensus 31 ~~F~GHFPg~PVmPGVl~iE 50 (129)
T 3esi_A 31 FWFNGHFTGQPLLPGVAQLD 50 (129)
T ss_dssp GGGCTTTBSSCCCCHHHHHH
T ss_pred chhcCCCCCCCcCCcHHHHH
Confidence 47888999999999997765
No 8
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=11.29 E-value=90 Score=24.20 Aligned_cols=19 Identities=47% Similarity=0.866 Sum_probs=16.5
Q ss_pred hhcCCCCCCccchhhHHHH
Q 028653 115 LFFPRHFPDWLEMPAALIL 133 (206)
Q Consensus 115 LFfp~~fP~~LElP~a~iL 133 (206)
.||..|||+.=-+|+.+++
T Consensus 54 ~ff~gHFp~~PvmPGvL~i 72 (160)
T 4h4g_A 54 PFFTGHFPKRPVMPGVLII 72 (160)
T ss_dssp GGGGTSCTTSCCCCHHHHH
T ss_pred ccccCCCCCCCcCcHHHHH
Confidence 5888999999999998765
No 9
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=11.08 E-value=3.4e+02 Score=24.82 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=29.5
Q ss_pred chhhHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhhccCccchhhhhcCCcch
Q 028653 50 GTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGK 104 (206)
Q Consensus 50 ~t~~lqWiasiaAi~LLildrTnwkTni~tslLVPyi~lslPs~vf~~~rGe~G~ 104 (206)
-|+.=|-..+-|..- ++.+--|| ..|..+.++++|+||+
T Consensus 341 VTP~Sq~~g~~A~~~--vl~~~~~~--------------~~~~~~~~~~~G~~G~ 379 (464)
T 2nx9_A 341 VTPTSQIVGTQAVIN--VVLGERYK--------------TITKETSGVLKGEYGK 379 (464)
T ss_dssp CTTHHHHHHHHHHHH--HHTSSTTS--------------SCCHHHHHHHTTTTCC
T ss_pred cCchhHhhHHHHHHH--HHcCCccc--------------cCCHHHHHHhCCCCCC
Confidence 477778887777754 45554344 5899999999999998
No 10
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=11.07 E-value=2.7e+02 Score=26.19 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=28.9
Q ss_pred chhhHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhhccCccchhhhhcCCcch
Q 028653 50 GTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGK 104 (206)
Q Consensus 50 ~t~~lqWiasiaAi~LLildrTnwkTni~tslLVPyi~lslPs~vf~~~rGe~G~ 104 (206)
-|+.=|-..+-|..-++ .+ + ....|..+.++++|+||+
T Consensus 359 VTP~Sq~vg~~A~~~v~--~~-------------~--~~~~~~~~~~~~~G~~G~ 396 (539)
T 1rqb_A 359 VTPSSQIVGTQAVFNVM--MG-------------E--YKRMTGEFADIMLGYYGA 396 (539)
T ss_dssp CTTHHHHHHHHHHHHHH--HC-------------T--TSSCCHHHHHHHTTTTCC
T ss_pred cCchhhhHHHHHHHHHh--cC-------------c--cccCCHHHHHHhCcCCCC
Confidence 47788888887776444 32 1 257999999999999998
Done!