Query 028653
Match_columns 206
No_of_seqs 69 out of 71
Neff 3.0
Searched_HMMs 13730
Date Tue Mar 26 01:03:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028653.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028653hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 37.3 23 0.0016 26.3 4.9 62 2-74 22-85 (146)
2 d2b4ya1 c.31.1.5 (A:36-302) NA 27.8 6.3 0.00046 30.7 0.2 28 22-53 3-30 (267)
3 d1ma3a_ c.31.1.5 (A:) AF0112, 20.5 12 0.00087 28.4 0.5 28 21-52 2-29 (252)
4 d1k04a_ a.24.14.1 (A:) FAT dom 18.0 23 0.0017 26.9 1.6 23 14-37 77-99 (142)
5 d2g2ca1 c.57.1.1 (A:1-163) Put 14.5 25 0.0018 25.1 1.0 34 19-52 47-81 (163)
6 d1z6ba1 d.38.1.6 (A:84-229) (3 10.6 47 0.0034 23.2 1.4 19 115-133 45-63 (146)
7 d2p5ka1 a.4.5.3 (A:2-64) Argin 10.5 48 0.0035 21.3 1.3 16 14-29 34-49 (63)
8 d1uuya_ c.57.1.1 (A:) Plant CN 10.2 42 0.0031 24.3 1.1 33 20-52 50-84 (161)
9 d2f5tx2 d.136.1.5 (X:110-246) 8.8 39 0.0028 25.2 0.3 19 135-153 27-45 (137)
10 d1ee8a1 a.156.1.2 (A:122-210) 8.6 81 0.0059 20.8 2.0 31 14-47 56-86 (89)
No 1
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=37.29 E-value=23 Score=26.30 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=40.2
Q ss_pred CCccccceeecCccchHhHHhhHHHHHHHHHHhhcchhhhHhhhcCCCchhhHHHHHHHHHHHH-HHHhC-CCcc
Q 028653 2 MGQKSYLATRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFAAIYL-LILDR-TNWR 74 (206)
Q Consensus 2 m~~~~~l~m~~~~~~~~~i~sd~~~l~~aa~kL~~h~~~a~~l~g~g~~t~~lqWiasiaAi~L-Lildr-Tnwk 74 (206)
+|+.+|+.++.-++.+..+++=.++-..+-+.+.++ +...++ .+..++..+.- +.-|+ +||.
T Consensus 22 ~~~~e~l~~p~~~tik~~v~~i~~kh~~~F~~ml~~---------L~i~~~--~~~~~f~~V~~elF~DG~~NWG 85 (146)
T d1k3ka_ 22 LNEPEYLYHPLLSPIKLYITGLMRDKESLFEAMLAN---------VRFHST--TGIDQLGLSMLQVSGDGNMNWG 85 (146)
T ss_dssp TCCCSSCCCSSCSHHHHHHHHHHHHHHHHHHHHTTT---------SCCCHH--HHHHHHHTHHHHHCSSCSCCHH
T ss_pred CCchHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH---------cCCCCh--HHHHHHHHHHHHHHcCCCCCHH
Confidence 567889888865656566666566666666666665 555444 55666666655 66788 5887
No 2
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.79 E-value=6.3 Score=30.75 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHhhcchhhhHhhhcCCCchhh
Q 028653 22 SDMKELVVAAKKLADHSVDAIKLRGLGFGTTF 53 (206)
Q Consensus 22 sd~~~l~~aa~kL~~h~~~a~~l~g~g~~t~~ 53 (206)
+|+.+|....+| +++ .+.+.|.|++++.
T Consensus 3 ~~l~~l~~~l~~-ak~---ivvlTGAGiS~~S 30 (267)
T d2b4ya1 3 SSMADFRKFFAK-AKH---IVIISGAGVSAES 30 (267)
T ss_dssp CCHHHHHHHHHH-CSE---EEEEECGGGGGGG
T ss_pred HHHHHHHHHHHh-CCc---EEEEeCcceehhh
Confidence 577777777665 566 6778899998763
No 3
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=20.47 E-value=12 Score=28.41 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=16.2
Q ss_pred HhhHHHHHHHHHHhhcchhhhHhhhcCCCchh
Q 028653 21 SSDMKELVVAAKKLADHSVDAIKLRGLGFGTT 52 (206)
Q Consensus 21 ~sd~~~l~~aa~kL~~h~~~a~~l~g~g~~t~ 52 (206)
+++++++.+..++ +++ .+++.|.|++++
T Consensus 2 ~~~i~~~~~~l~~-a~~---ivv~tGAGiS~~ 29 (252)
T d1ma3a_ 2 EDEIRKAAEILAK-SKH---AVVFTGAGISAE 29 (252)
T ss_dssp HHHHHHHHHHHHH-CSS---EEEEECGGGSCC
T ss_pred hHHHHHHHHHHHh-CCc---EEEEECchhhhh
Confidence 3445554444333 344 456679999886
No 4
>d1k04a_ a.24.14.1 (A:) FAT domain of focal adhesion kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.03 E-value=23 Score=26.87 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=18.6
Q ss_pred ccchHhHHhhHHHHHHHHHHhhcc
Q 028653 14 GVTSDLISSDMKELVVAAKKLADH 37 (206)
Q Consensus 14 ~~~~~~i~sd~~~l~~aa~kL~~h 37 (206)
+.++.+++||+.||..+. |||..
T Consensus 77 ema~klLskDm~eLi~~M-klAqq 99 (142)
T d1k04a_ 77 EMAQKLLNSDLGELINKM-KLAQQ 99 (142)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHH
Confidence 567889999999999998 55443
No 5
>d2g2ca1 c.57.1.1 (A:1-163) Putative molybdenum cofactor biosynthesis protein DIP0503 {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=14.50 E-value=25 Score=25.14 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=26.1
Q ss_pred hHHhhHHHHHHHHHHhhcchhhhHhh-hcCCCchh
Q 028653 19 LISSDMKELVVAAKKLADHSVDAIKL-RGLGFGTT 52 (206)
Q Consensus 19 ~i~sd~~~l~~aa~kL~~h~~~a~~l-~g~g~~t~ 52 (206)
.+..|.+++..+.++..++++|.+.. ||+|.+..
T Consensus 47 iv~D~~~~i~~~~~~a~~~~~DlVittGG~g~~~~ 81 (163)
T d2g2ca1 47 VVPEGYDTVVEAIATALKQGARFIITAGGTGIRAK 81 (163)
T ss_dssp EECSSHHHHHHHHHHHHHTTCSEEEEESCCSSSTT
T ss_pred eecchHHHHHHHHHhhhccCCCEEEecCCCCCCCc
Confidence 35678888999999877666888854 78999854
No 6
>d1z6ba1 d.38.1.6 (A:84-229) (3R)-hydroxymyristoyl ACP dehydrase FabZ {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=10.55 E-value=47 Score=23.19 Aligned_cols=19 Identities=42% Similarity=0.718 Sum_probs=15.8
Q ss_pred hhcCCCCCCccchhhHHHH
Q 028653 115 LFFPRHFPDWLEMPAALIL 133 (206)
Q Consensus 115 LFfp~~fP~~LElP~a~iL 133 (206)
.||..|||+.=-+|+.+++
T Consensus 45 ~~f~ghfp~~Pi~Pgvlli 63 (146)
T d1z6ba1 45 PFFNGHFPQKQIMPGVLQI 63 (146)
T ss_dssp GGGGTSCTTSCCCCHHHHH
T ss_pred ceeecccCCccceehHHHH
Confidence 4889999999999998543
No 7
>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=10.45 E-value=48 Score=21.30 Aligned_cols=16 Identities=44% Similarity=0.549 Sum_probs=13.7
Q ss_pred ccchHhHHhhHHHHHH
Q 028653 14 GVTSDLISSDMKELVV 29 (206)
Q Consensus 14 ~~~~~~i~sd~~~l~~ 29 (206)
+.+|+-++.|++||+.
T Consensus 34 ~vTQaTlSRDL~eLg~ 49 (63)
T d2p5ka1 34 KVTQATVSRDIKELHL 49 (63)
T ss_dssp CCCHHHHHHHHHHHTC
T ss_pred CeeHHHHHHHHHHhCC
Confidence 5778889999999974
No 8
>d1uuya_ c.57.1.1 (A:) Plant CNX1 G domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=10.20 E-value=42 Score=24.29 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=25.2
Q ss_pred HHhhHHHHHHHHHHhhc-chhhhHhh-hcCCCchh
Q 028653 20 ISSDMKELVVAAKKLAD-HSVDAIKL-RGLGFGTT 52 (206)
Q Consensus 20 i~sd~~~l~~aa~kL~~-h~~~a~~l-~g~g~~t~ 52 (206)
+..|-+++.++.+++++ ..+|.+.. ||.|.|..
T Consensus 50 vpDd~~~I~~~l~~~~~~~~~D~IittGGtg~g~~ 84 (161)
T d1uuya_ 50 VPDEVERIKDILQKWSDVDEMDLILTLGGTGFTPR 84 (161)
T ss_dssp ECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTT
T ss_pred ECCCHHHHHHHHHHhhhcCCceEEEEecCCCCCcc
Confidence 45688899999999864 56887755 78999854
No 9
>d2f5tx2 d.136.1.5 (X:110-246) Transcriptional regulator TrmB {Thermococcus litoralis [TaxId: 2265]}
Probab=8.76 E-value=39 Score=25.24 Aligned_cols=19 Identities=47% Similarity=0.580 Sum_probs=16.7
Q ss_pred HhhchhhHHHhhhcchHHH
Q 028653 135 IVVAPSLFASYIRSSWIGV 153 (206)
Q Consensus 135 vvvAP~~~~~~~R~s~~G~ 153 (206)
+||+|+.+-.++|+++.++
T Consensus 27 IvvtP~eFF~~Ire~L~~~ 45 (137)
T d2f5tx2 27 IVVTPSEFFETIREDLIKT 45 (137)
T ss_dssp EEEECGGGHHHHHHHHHHH
T ss_pred EEEchHHHHHHHHHHHHHH
Confidence 5799999999999998775
No 10
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=8.59 E-value=81 Score=20.79 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=25.7
Q ss_pred ccchHhHHhhHHHHHHHHHHhhcchhhhHhhhcC
Q 028653 14 GVTSDLISSDMKELVVAAKKLADHSVDAIKLRGL 47 (206)
Q Consensus 14 ~~~~~~i~sd~~~l~~aa~kL~~h~~~a~~l~g~ 47 (206)
..+.++-+.++++|-.++++.-+. |++.||-
T Consensus 56 ~~~~~Ls~~e~~~L~~~i~~vl~~---ai~~gGt 86 (89)
T d1ee8a1 56 RPARSLTEEEARRLYRALREVLAE---AVELGGS 86 (89)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHHHH---HHHTTCC
T ss_pred chhhhCCHHHHHHHHHHHHHHHHH---HHHcCCc
Confidence 345577788999999999999988 8888863
Done!