Query 028654
Match_columns 206
No_of_seqs 159 out of 1869
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 14:54:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 9.8E-43 2.1E-47 233.2 20.2 198 1-205 2-204 (205)
2 KOG0394 Ras-related GTPase [Ge 100.0 3.1E-42 6.7E-47 227.9 18.6 206 1-206 1-210 (210)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 4.2E-40 9.2E-45 219.7 19.8 194 6-206 3-200 (200)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.9E-38 4.2E-43 211.9 18.8 171 7-183 21-191 (221)
5 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 5E-38 1.1E-42 222.9 21.9 195 9-206 1-201 (201)
6 KOG0078 GTP-binding protein SE 100.0 1.8E-36 4E-41 206.0 19.9 171 5-182 9-179 (207)
7 cd04121 Rab40 Rab40 subfamily. 100.0 3.4E-36 7.4E-41 210.3 21.8 169 6-182 4-172 (189)
8 KOG0080 GTPase Rab18, small G 100.0 3.4E-36 7.4E-41 194.9 17.8 171 6-182 9-179 (209)
9 cd04112 Rab26 Rab26 subfamily. 100.0 1.6E-35 3.4E-40 208.5 22.0 190 9-206 1-191 (191)
10 cd04120 Rab12 Rab12 subfamily. 100.0 1.3E-35 2.8E-40 209.2 20.7 165 9-179 1-165 (202)
11 cd04144 Ras2 Ras2 subfamily. 100.0 2.9E-35 6.2E-40 207.0 20.4 188 10-206 1-188 (190)
12 cd04118 Rab24 Rab24 subfamily. 100.0 1.7E-34 3.7E-39 203.7 23.1 190 9-206 1-193 (193)
13 cd04110 Rab35 Rab35 subfamily. 100.0 1.7E-34 3.6E-39 204.4 22.6 192 6-206 4-199 (199)
14 cd04109 Rab28 Rab28 subfamily. 100.0 1.5E-34 3.2E-39 207.0 21.9 167 9-179 1-168 (215)
15 PLN03110 Rab GTPase; Provision 100.0 2.6E-34 5.5E-39 205.6 22.9 166 6-178 10-175 (216)
16 KOG0098 GTPase Rab2, small G p 100.0 2.3E-35 4.9E-40 195.7 16.0 171 5-182 3-173 (216)
17 cd04111 Rab39 Rab39 subfamily. 100.0 3.4E-34 7.4E-39 204.1 22.3 180 8-193 2-183 (211)
18 cd04126 Rab20 Rab20 subfamily. 100.0 1.4E-34 3E-39 206.1 20.2 187 9-206 1-220 (220)
19 cd04133 Rop_like Rop subfamily 100.0 2.4E-34 5.1E-39 199.0 20.5 164 9-178 2-174 (176)
20 KOG0087 GTPase Rab11/YPT3, sma 100.0 8.3E-35 1.8E-39 197.1 17.4 169 5-180 11-179 (222)
21 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.4E-34 5.2E-39 200.1 20.2 167 6-178 3-181 (182)
22 cd04122 Rab14 Rab14 subfamily. 100.0 5.6E-34 1.2E-38 196.5 20.6 164 8-178 2-165 (166)
23 PTZ00369 Ras-like protein; Pro 100.0 4.2E-34 9.1E-39 200.9 20.1 169 6-181 3-171 (189)
24 KOG0079 GTP-binding protein H- 100.0 2.6E-35 5.7E-40 188.3 12.4 166 7-180 7-172 (198)
25 cd04125 RabA_like RabA-like su 100.0 1.1E-33 2.4E-38 198.7 21.9 167 9-182 1-167 (188)
26 cd01875 RhoG RhoG subfamily. 100.0 7.6E-34 1.6E-38 199.7 21.0 165 8-178 3-178 (191)
27 cd01867 Rab8_Rab10_Rab13_like 100.0 8E-34 1.7E-38 195.9 20.5 165 7-178 2-166 (167)
28 cd04131 Rnd Rnd subfamily. Th 100.0 9.7E-34 2.1E-38 196.7 20.2 163 9-177 2-176 (178)
29 KOG0091 GTPase Rab39, small G 100.0 1.2E-34 2.6E-39 188.2 14.3 195 6-206 6-213 (213)
30 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.6E-33 3.5E-38 201.7 21.5 168 6-179 11-190 (232)
31 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.4E-33 3.1E-38 195.2 20.4 167 8-181 2-168 (172)
32 cd04116 Rab9 Rab9 subfamily. 100.0 2.2E-33 4.8E-38 194.2 20.7 168 5-175 2-169 (170)
33 KOG0086 GTPase Rab4, small G p 100.0 1.6E-34 3.4E-39 185.8 13.6 175 1-182 2-176 (214)
34 cd04128 Spg1 Spg1p. Spg1p (se 100.0 3.8E-33 8.2E-38 194.5 20.8 168 9-182 1-171 (182)
35 cd04127 Rab27A Rab27a subfamil 100.0 3.1E-33 6.7E-38 195.2 20.3 167 7-179 3-179 (180)
36 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 6.2E-33 1.3E-37 197.7 22.1 167 9-181 2-180 (222)
37 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.7E-33 5.8E-38 194.3 19.7 162 9-176 2-174 (175)
38 cd01865 Rab3 Rab3 subfamily. 100.0 5.3E-33 1.2E-37 191.4 20.9 163 9-178 2-164 (165)
39 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 4.9E-33 1.1E-37 191.8 20.5 164 8-178 2-165 (166)
40 cd04132 Rho4_like Rho4-like su 100.0 3.8E-33 8.3E-38 195.9 20.2 169 9-183 1-173 (187)
41 PLN03071 GTP-binding nuclear p 100.0 6.3E-33 1.4E-37 198.6 21.2 165 6-180 11-175 (219)
42 cd04119 RJL RJL (RabJ-Like) su 100.0 5.5E-33 1.2E-37 191.8 20.0 167 9-178 1-168 (168)
43 cd04117 Rab15 Rab15 subfamily. 100.0 5.3E-33 1.1E-37 190.6 19.8 160 9-175 1-160 (161)
44 PLN03108 Rab family protein; P 100.0 1.4E-32 3.1E-37 195.9 22.4 168 7-181 5-172 (210)
45 cd01864 Rab19 Rab19 subfamily. 100.0 6.6E-33 1.4E-37 191.0 20.1 163 7-175 2-164 (165)
46 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 8.8E-33 1.9E-37 190.9 20.7 165 10-178 2-166 (170)
47 KOG0093 GTPase Rab3, small G p 100.0 1.4E-33 3E-38 180.2 14.5 169 6-181 19-187 (193)
48 cd01868 Rab11_like Rab11-like. 100.0 1.1E-32 2.4E-37 189.9 20.1 163 7-176 2-164 (165)
49 cd04136 Rap_like Rap-like subf 100.0 1E-32 2.2E-37 189.6 19.8 161 9-176 2-162 (163)
50 cd04175 Rap1 Rap1 subgroup. T 100.0 1.5E-32 3.3E-37 189.0 19.9 163 8-177 1-163 (164)
51 cd04134 Rho3 Rho3 subfamily. 100.0 2E-32 4.4E-37 192.3 20.7 166 10-181 2-178 (189)
52 KOG0088 GTPase Rab21, small G 100.0 1.4E-33 3.1E-38 182.4 13.4 171 5-182 10-180 (218)
53 cd01866 Rab2 Rab2 subfamily. 100.0 3.5E-32 7.6E-37 187.8 20.9 165 7-178 3-167 (168)
54 cd01862 Rab7 Rab7 subfamily. 100.0 5E-32 1.1E-36 187.8 21.2 170 9-180 1-170 (172)
55 cd04124 RabL2 RabL2 subfamily. 100.0 4.2E-32 9.1E-37 186.1 20.4 161 9-180 1-161 (161)
56 cd01871 Rac1_like Rac1-like su 100.0 3.1E-32 6.7E-37 188.8 19.8 161 9-175 2-173 (174)
57 KOG0095 GTPase Rab30, small G 100.0 2.7E-33 5.8E-38 179.5 13.3 166 7-179 6-171 (213)
58 cd04142 RRP22 RRP22 subfamily. 100.0 3.9E-32 8.5E-37 191.5 20.3 173 9-184 1-181 (198)
59 PLN03118 Rab family protein; P 100.0 9.4E-32 2E-36 192.1 22.5 171 5-182 11-182 (211)
60 cd00877 Ran Ran (Ras-related n 100.0 5.2E-32 1.1E-36 186.5 20.4 162 9-180 1-162 (166)
61 cd04106 Rab23_lke Rab23-like s 100.0 3.5E-32 7.5E-37 186.8 19.1 159 9-175 1-161 (162)
62 PF00071 Ras: Ras family; Int 100.0 3.3E-32 7.2E-37 186.9 18.7 161 10-177 1-161 (162)
63 smart00173 RAS Ras subfamily o 100.0 6.9E-32 1.5E-36 185.7 20.0 163 9-178 1-163 (164)
64 cd04113 Rab4 Rab4 subfamily. 100.0 5E-32 1.1E-36 185.9 19.3 160 9-175 1-160 (161)
65 smart00175 RAB Rab subfamily o 100.0 8.7E-32 1.9E-36 185.1 20.1 164 9-179 1-164 (164)
66 cd04138 H_N_K_Ras_like H-Ras/N 100.0 9.5E-32 2.1E-36 184.5 20.0 161 8-176 1-161 (162)
67 cd04176 Rap2 Rap2 subgroup. T 100.0 7.8E-32 1.7E-36 185.3 19.4 162 8-176 1-162 (163)
68 cd01861 Rab6 Rab6 subfamily. 100.0 1.2E-31 2.7E-36 183.9 19.5 160 9-175 1-160 (161)
69 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.2E-31 4.8E-36 183.2 20.3 162 8-176 2-163 (164)
70 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.1E-31 4.5E-36 184.3 20.1 163 8-176 2-168 (170)
71 cd04140 ARHI_like ARHI subfami 100.0 2.2E-31 4.9E-36 183.3 20.1 162 9-175 2-163 (165)
72 smart00176 RAN Ran (Ras-relate 100.0 2.8E-31 6E-36 186.9 19.8 156 14-179 1-156 (200)
73 cd01860 Rab5_related Rab5-rela 100.0 3.9E-31 8.4E-36 181.8 20.0 162 8-176 1-162 (163)
74 cd04103 Centaurin_gamma Centau 100.0 2.6E-31 5.7E-36 181.2 18.9 157 9-175 1-157 (158)
75 cd01892 Miro2 Miro2 subfamily. 100.0 2.9E-31 6.4E-36 183.2 18.7 164 7-178 3-167 (169)
76 smart00174 RHO Rho (Ras homolo 100.0 3.6E-31 7.8E-36 183.8 19.3 162 11-178 1-173 (174)
77 cd04143 Rhes_like Rhes_like su 100.0 4.6E-31 9.9E-36 191.5 20.4 167 9-178 1-172 (247)
78 cd04129 Rho2 Rho2 subfamily. 100.0 1E-30 2.2E-35 183.4 21.0 168 9-182 2-178 (187)
79 cd04177 RSR1 RSR1 subgroup. R 100.0 1.1E-30 2.3E-35 180.4 20.2 163 9-177 2-164 (168)
80 KOG0097 GTPase Rab14, small G 100.0 3.3E-31 7E-36 168.6 15.9 194 6-206 9-215 (215)
81 cd04123 Rab21 Rab21 subfamily. 100.0 1.5E-30 3.2E-35 178.6 20.1 161 9-176 1-161 (162)
82 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.1E-30 2.3E-35 179.8 19.5 160 9-176 1-163 (164)
83 cd01863 Rab18 Rab18 subfamily. 100.0 1.6E-30 3.4E-35 178.4 20.2 160 9-175 1-160 (161)
84 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.3E-30 2.8E-35 180.8 19.9 160 9-174 1-171 (173)
85 cd04135 Tc10 TC10 subfamily. 100.0 1.9E-30 4.1E-35 180.2 20.0 163 9-177 1-174 (174)
86 cd04114 Rab30 Rab30 subfamily. 100.0 4.6E-30 1E-34 177.4 20.7 163 7-176 6-168 (169)
87 cd04148 RGK RGK subfamily. Th 100.0 4.9E-30 1.1E-34 184.0 20.5 164 9-180 1-166 (221)
88 cd01873 RhoBTB RhoBTB subfamil 100.0 3.7E-30 8.1E-35 180.9 19.4 160 8-175 2-194 (195)
89 cd01870 RhoA_like RhoA-like su 100.0 1E-29 2.2E-34 176.7 20.1 162 9-176 2-174 (175)
90 cd00154 Rab Rab family. Rab G 100.0 6.5E-30 1.4E-34 174.6 18.7 159 9-174 1-159 (159)
91 cd04146 RERG_RasL11_like RERG/ 100.0 4.1E-30 8.8E-35 177.1 17.7 162 10-177 1-164 (165)
92 cd04139 RalA_RalB RalA/RalB su 100.0 2.4E-29 5.3E-34 172.9 19.9 163 9-178 1-163 (164)
93 cd04147 Ras_dva Ras-dva subfam 100.0 1.8E-29 3.9E-34 178.6 19.0 168 10-182 1-168 (198)
94 KOG0083 GTPase Rab26/Rab37, sm 100.0 2E-31 4.3E-36 167.8 5.9 163 13-182 2-165 (192)
95 cd04158 ARD1 ARD1 subfamily. 100.0 2.8E-29 6E-34 173.5 17.1 160 10-181 1-165 (169)
96 cd00876 Ras Ras family. The R 100.0 6.3E-29 1.4E-33 170.1 18.7 159 10-175 1-159 (160)
97 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 3.4E-29 7.4E-34 175.0 17.1 167 8-182 3-175 (183)
98 cd00157 Rho Rho (Ras homology) 100.0 1.1E-28 2.3E-33 170.9 19.4 160 9-174 1-170 (171)
99 cd04149 Arf6 Arf6 subfamily. 100.0 7.6E-30 1.7E-34 175.9 13.4 156 7-174 8-167 (168)
100 cd04137 RheB Rheb (Ras Homolog 100.0 1.8E-28 3.9E-33 171.2 20.4 166 9-181 2-167 (180)
101 smart00177 ARF ARF-like small 100.0 1.8E-29 3.8E-34 175.3 15.0 158 7-176 12-173 (175)
102 PLN00223 ADP-ribosylation fact 100.0 1.9E-29 4.1E-34 175.8 15.1 162 6-179 15-180 (181)
103 cd01893 Miro1 Miro1 subfamily. 100.0 1.1E-28 2.3E-33 170.1 18.2 163 9-178 1-165 (166)
104 cd04150 Arf1_5_like Arf1-Arf5- 100.0 3E-29 6.5E-34 171.5 13.9 155 9-174 1-158 (159)
105 KOG0081 GTPase Rab27, small G 100.0 6.6E-31 1.4E-35 170.2 5.2 180 6-191 7-197 (219)
106 PTZ00133 ADP-ribosylation fact 100.0 6E-29 1.3E-33 173.5 14.7 161 7-179 16-180 (182)
107 KOG0393 Ras-related small GTPa 100.0 3.9E-29 8.3E-34 171.0 13.1 169 7-181 3-183 (198)
108 PTZ00132 GTP-binding nuclear p 100.0 8.5E-28 1.8E-32 172.2 20.6 168 5-182 6-173 (215)
109 KOG0395 Ras-related GTPase [Ge 100.0 2.2E-28 4.8E-33 170.9 16.9 165 7-178 2-166 (196)
110 cd04154 Arl2 Arl2 subfamily. 100.0 6.4E-29 1.4E-33 172.4 14.0 158 5-174 11-172 (173)
111 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 4.3E-29 9.2E-34 171.6 12.4 155 10-174 1-163 (164)
112 cd04157 Arl6 Arl6 subfamily. 100.0 2.5E-28 5.5E-33 167.6 13.4 156 10-174 1-161 (162)
113 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 5.1E-28 1.1E-32 167.9 14.0 156 7-174 14-173 (174)
114 cd04151 Arl1 Arl1 subfamily. 100.0 7.9E-28 1.7E-32 164.5 12.7 153 10-174 1-157 (158)
115 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1.2E-27 2.6E-32 164.0 13.3 154 10-174 1-159 (160)
116 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.5E-27 3.2E-32 164.4 13.7 157 10-174 1-166 (167)
117 cd04102 RabL3 RabL3 (Rab-like3 100.0 7E-27 1.5E-31 164.5 17.3 152 9-163 1-176 (202)
118 cd00878 Arf_Arl Arf (ADP-ribos 100.0 2.9E-27 6.3E-32 161.7 14.9 153 10-174 1-157 (158)
119 cd04160 Arfrp1 Arfrp1 subfamil 100.0 1.9E-27 4.1E-32 164.0 13.5 154 10-174 1-166 (167)
120 cd00879 Sar1 Sar1 subfamily. 100.0 1.2E-26 2.6E-31 163.3 16.1 157 7-175 18-189 (190)
121 PF00025 Arf: ADP-ribosylation 100.0 7.6E-27 1.6E-31 161.8 14.7 159 6-176 12-175 (175)
122 smart00178 SAR Sar1p-like memb 99.9 1.9E-26 4.2E-31 161.2 16.0 158 6-175 15-183 (184)
123 cd01897 NOG NOG1 is a nucleola 99.9 6.3E-26 1.4E-30 156.6 16.6 157 9-177 1-168 (168)
124 cd04159 Arl10_like Arl10-like 99.9 2.7E-26 6E-31 156.7 14.6 154 11-174 2-158 (159)
125 KOG0073 GTP-binding ADP-ribosy 99.9 7.6E-26 1.7E-30 147.4 15.3 166 5-179 13-180 (185)
126 PTZ00099 rab6; Provisional 99.9 4.3E-25 9.2E-30 152.8 19.1 145 31-182 3-147 (176)
127 cd01898 Obg Obg subfamily. Th 99.9 1.4E-25 3E-30 155.2 16.3 160 10-175 2-169 (170)
128 PRK12299 obgE GTPase CgtA; Rev 99.9 1.9E-25 4E-30 168.1 18.1 168 8-181 158-332 (335)
129 cd01890 LepA LepA subfamily. 99.9 1.3E-25 2.9E-30 156.5 16.1 155 10-176 2-176 (179)
130 cd04171 SelB SelB subfamily. 99.9 1.1E-25 2.3E-30 154.7 15.0 154 10-174 2-163 (164)
131 cd04155 Arl3 Arl3 subfamily. 99.9 8.8E-26 1.9E-30 156.6 14.0 158 5-174 11-172 (173)
132 PLN00023 GTP-binding protein; 99.9 3.5E-25 7.5E-30 163.1 17.7 145 6-150 19-188 (334)
133 TIGR00231 small_GTP small GTP- 99.9 1.4E-24 3E-29 148.1 17.6 158 8-173 1-160 (161)
134 TIGR00436 era GTP-binding prot 99.9 5.9E-25 1.3E-29 162.3 16.3 159 10-182 2-169 (270)
135 cd01878 HflX HflX subfamily. 99.9 6.2E-25 1.3E-29 156.2 15.0 158 6-176 39-204 (204)
136 PF02421 FeoB_N: Ferrous iron 99.9 2E-25 4.4E-30 149.2 11.4 148 9-172 1-156 (156)
137 TIGR02528 EutP ethanolamine ut 99.9 2.8E-25 6.1E-30 149.2 11.7 135 10-173 2-141 (142)
138 KOG4252 GTP-binding protein [S 99.9 9E-27 2E-31 154.0 3.5 168 7-182 19-186 (246)
139 PRK15494 era GTPase Era; Provi 99.9 4.7E-24 1E-28 161.6 17.7 164 6-185 50-224 (339)
140 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.6E-24 5.6E-29 148.5 14.9 159 10-177 2-166 (168)
141 cd01879 FeoB Ferrous iron tran 99.9 4.6E-24 1E-28 145.7 15.4 148 13-176 1-156 (158)
142 KOG0075 GTP-binding ADP-ribosy 99.9 2.4E-25 5.2E-30 142.5 7.8 163 8-177 20-182 (186)
143 cd01889 SelB_euk SelB subfamil 99.9 2.3E-24 5E-29 151.8 13.6 162 9-178 1-187 (192)
144 COG1159 Era GTPase [General fu 99.9 2.6E-24 5.6E-29 154.6 13.7 168 7-185 5-180 (298)
145 TIGR02729 Obg_CgtA Obg family 99.9 9.2E-24 2E-28 158.9 17.0 162 8-176 157-328 (329)
146 COG1100 GTPase SAR1 and relate 99.9 2.4E-23 5.3E-28 149.6 18.2 171 7-181 4-189 (219)
147 cd01891 TypA_BipA TypA (tyrosi 99.9 6.4E-24 1.4E-28 149.8 14.0 162 9-179 3-190 (194)
148 cd00882 Ras_like_GTPase Ras-li 99.9 2.8E-23 6E-28 140.6 16.5 156 13-174 1-157 (157)
149 KOG0070 GTP-binding ADP-ribosy 99.9 5.2E-24 1.1E-28 142.4 12.3 166 6-179 15-180 (181)
150 cd00881 GTP_translation_factor 99.9 9E-24 2E-28 148.4 14.2 158 10-177 1-187 (189)
151 TIGR03156 GTP_HflX GTP-binding 99.9 2E-23 4.4E-28 158.3 16.4 154 7-175 188-350 (351)
152 TIGR00475 selB selenocysteine- 99.9 1.7E-23 3.8E-28 168.1 16.1 181 9-203 1-191 (581)
153 PRK04213 GTP-binding protein; 99.9 2.3E-23 5.1E-28 147.8 15.1 158 5-179 6-194 (201)
154 PRK03003 GTP-binding protein D 99.9 2.8E-23 6E-28 164.2 16.6 161 7-177 210-382 (472)
155 PRK12298 obgE GTPase CgtA; Rev 99.9 5.6E-23 1.2E-27 157.6 17.7 168 9-182 160-338 (390)
156 PRK00089 era GTPase Era; Revie 99.9 6.1E-23 1.3E-27 153.5 16.5 163 8-182 5-176 (292)
157 PRK03003 GTP-binding protein D 99.9 6.1E-23 1.3E-27 162.2 16.8 155 8-179 38-201 (472)
158 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.2E-22 2.5E-27 138.6 15.8 146 9-176 2-156 (157)
159 PRK12296 obgE GTPase CgtA; Rev 99.9 1.4E-22 3E-27 158.1 18.0 167 8-180 159-343 (500)
160 cd01888 eIF2_gamma eIF2-gamma 99.9 4.2E-23 9E-28 146.4 13.5 164 9-178 1-200 (203)
161 PRK12297 obgE GTPase CgtA; Rev 99.9 2.5E-22 5.3E-27 154.9 18.7 163 9-181 159-331 (424)
162 TIGR01393 lepA GTP-binding pro 99.9 1.4E-22 3.1E-27 163.0 18.0 161 8-180 3-183 (595)
163 COG1160 Predicted GTPases [Gen 99.9 5E-23 1.1E-27 155.7 14.4 175 9-202 4-192 (444)
164 TIGR00487 IF-2 translation ini 99.9 2.1E-22 4.5E-27 161.3 18.4 155 7-175 86-248 (587)
165 PF00009 GTP_EFTU: Elongation 99.9 2.7E-23 5.7E-28 145.9 11.7 162 7-177 2-187 (188)
166 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.1E-22 4.5E-27 156.9 17.6 154 6-180 201-363 (442)
167 PRK05291 trmE tRNA modificatio 99.9 1.1E-22 2.5E-27 159.2 15.6 149 7-178 214-371 (449)
168 cd01881 Obg_like The Obg-like 99.9 6.5E-23 1.4E-27 142.5 12.8 159 13-175 1-175 (176)
169 TIGR03594 GTPase_EngA ribosome 99.9 2E-22 4.4E-27 158.3 17.1 159 7-178 171-345 (429)
170 cd01894 EngA1 EngA1 subfamily. 99.9 1.5E-22 3.1E-27 138.1 13.8 147 12-175 1-156 (157)
171 PF08477 Miro: Miro-like prote 99.9 1.4E-22 3E-27 132.0 12.9 114 10-128 1-119 (119)
172 PRK00454 engB GTP-binding prot 99.9 3.2E-22 7E-27 141.4 15.2 160 7-178 23-195 (196)
173 TIGR03598 GTPase_YsxC ribosome 99.9 1.8E-22 3.8E-27 140.7 13.3 151 5-166 15-179 (179)
174 cd01895 EngA2 EngA2 subfamily. 99.9 5.5E-22 1.2E-26 137.4 15.6 156 8-175 2-173 (174)
175 PRK11058 GTPase HflX; Provisio 99.9 4.9E-22 1.1E-26 154.0 16.4 158 9-179 198-364 (426)
176 PRK15467 ethanolamine utilizat 99.9 2.3E-22 5E-27 137.0 13.0 145 10-182 3-152 (158)
177 cd04163 Era Era subfamily. Er 99.9 6.9E-22 1.5E-26 135.9 15.1 157 8-175 3-167 (168)
178 KOG0071 GTP-binding ADP-ribosy 99.9 2.2E-22 4.8E-27 128.0 11.4 163 7-177 16-178 (180)
179 KOG1673 Ras GTPases [General f 99.9 4.2E-22 9.2E-27 128.9 12.8 173 5-184 17-193 (205)
180 PRK00093 GTP-binding protein D 99.9 1.1E-21 2.3E-26 154.5 16.5 149 9-176 2-161 (435)
181 PRK05306 infB translation init 99.9 9.1E-22 2E-26 161.3 16.0 159 6-175 288-450 (787)
182 CHL00189 infB translation init 99.9 7.8E-22 1.7E-26 160.4 15.4 162 6-176 242-409 (742)
183 cd04105 SR_beta Signal recogni 99.9 1.6E-21 3.4E-26 138.2 15.2 122 10-133 2-125 (203)
184 cd00880 Era_like Era (E. coli 99.9 2.1E-21 4.6E-26 132.5 13.8 154 13-175 1-162 (163)
185 PRK00093 GTP-binding protein D 99.9 4.4E-21 9.6E-26 151.0 17.3 162 7-178 172-345 (435)
186 TIGR03594 GTPase_EngA ribosome 99.9 3.3E-21 7.1E-26 151.5 16.5 151 10-179 1-162 (429)
187 PRK05433 GTP-binding protein L 99.9 4E-21 8.7E-26 154.8 17.0 162 7-180 6-187 (600)
188 KOG1423 Ras-like GTPase ERA [C 99.9 3.5E-21 7.6E-26 138.3 14.3 177 5-189 69-283 (379)
189 PRK09554 feoB ferrous iron tra 99.9 1.3E-20 2.9E-25 155.1 18.6 154 7-176 2-167 (772)
190 PRK09518 bifunctional cytidyla 99.9 6.4E-21 1.4E-25 157.3 16.2 161 8-178 450-622 (712)
191 PRK04000 translation initiatio 99.9 4.1E-21 8.9E-26 149.0 14.1 170 2-178 3-202 (411)
192 TIGR03680 eif2g_arch translati 99.9 2.5E-21 5.3E-26 150.4 12.7 167 5-177 1-196 (406)
193 KOG3883 Ras family small GTPas 99.9 7.4E-20 1.6E-24 118.3 17.0 169 7-182 8-180 (198)
194 PRK09518 bifunctional cytidyla 99.9 1.8E-20 3.8E-25 154.7 17.7 155 8-179 275-438 (712)
195 TIGR00491 aIF-2 translation in 99.9 8.9E-21 1.9E-25 151.8 14.8 158 8-176 4-215 (590)
196 PRK10218 GTP-binding protein; 99.9 2.7E-20 5.8E-25 149.5 17.1 165 7-180 4-198 (607)
197 PF10662 PduV-EutP: Ethanolami 99.9 5.4E-21 1.2E-25 125.1 10.8 136 10-173 3-142 (143)
198 TIGR00437 feoB ferrous iron tr 99.9 1.3E-20 2.9E-25 151.7 15.5 146 15-176 1-154 (591)
199 cd01876 YihA_EngB The YihA (En 99.9 2E-20 4.3E-25 129.0 14.3 154 10-176 1-170 (170)
200 PRK10512 selenocysteinyl-tRNA- 99.9 1.9E-20 4.1E-25 151.2 16.0 161 10-179 2-168 (614)
201 PRK12317 elongation factor 1-a 99.9 7.5E-21 1.6E-25 148.9 13.2 158 5-169 3-197 (425)
202 cd01896 DRG The developmentall 99.9 5.1E-20 1.1E-24 132.9 16.5 155 10-176 2-225 (233)
203 cd01884 EF_Tu EF-Tu subfamily. 99.9 2.9E-20 6.2E-25 130.5 14.2 148 8-165 2-171 (195)
204 TIGR00483 EF-1_alpha translati 99.9 1E-20 2.2E-25 148.2 13.2 158 5-169 4-199 (426)
205 TIGR01394 TypA_BipA GTP-bindin 99.9 2.1E-20 4.6E-25 150.3 14.6 163 9-180 2-194 (594)
206 KOG0076 GTP-binding ADP-ribosy 99.9 1.1E-21 2.5E-26 129.3 6.0 165 7-179 16-189 (197)
207 COG1084 Predicted GTPase [Gene 99.8 6.7E-20 1.5E-24 133.2 15.0 165 6-182 166-341 (346)
208 COG1160 Predicted GTPases [Gen 99.8 7.1E-20 1.5E-24 138.8 15.7 161 7-177 177-351 (444)
209 COG0486 ThdF Predicted GTPase 99.8 9.3E-20 2E-24 138.5 15.7 155 6-179 215-378 (454)
210 COG0218 Predicted GTPase [Gene 99.8 1.2E-19 2.6E-24 124.0 14.4 159 7-178 23-198 (200)
211 KOG4423 GTP-binding protein-li 99.8 2.5E-22 5.3E-27 133.8 1.1 176 6-182 23-199 (229)
212 cd04166 CysN_ATPS CysN_ATPS su 99.8 5.1E-20 1.1E-24 131.1 12.3 150 10-168 1-185 (208)
213 PRK12736 elongation factor Tu; 99.8 1.2E-19 2.7E-24 140.4 14.9 163 5-177 9-201 (394)
214 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 3.7E-20 8E-25 123.9 10.3 165 7-181 9-173 (216)
215 PRK12735 elongation factor Tu; 99.8 1.4E-19 3.1E-24 140.1 14.8 163 5-177 9-203 (396)
216 PRK04004 translation initiatio 99.8 3E-19 6.4E-24 143.6 15.8 159 7-176 5-217 (586)
217 COG1163 DRG Predicted GTPase [ 99.8 1.2E-18 2.7E-23 126.3 17.0 174 9-195 64-312 (365)
218 cd04168 TetM_like Tet(M)-like 99.8 3.7E-19 8E-24 128.6 14.0 115 10-132 1-131 (237)
219 KOG0074 GTP-binding ADP-ribosy 99.8 7E-20 1.5E-24 116.8 8.8 165 4-175 13-177 (185)
220 cd01883 EF1_alpha Eukaryotic e 99.8 1.1E-19 2.4E-24 130.3 11.0 148 10-166 1-194 (219)
221 COG2229 Predicted GTPase [Gene 99.8 1.8E-18 3.9E-23 115.8 15.5 160 4-175 6-176 (187)
222 KOG1489 Predicted GTP-binding 99.8 5.2E-19 1.1E-23 127.8 13.5 159 8-174 196-364 (366)
223 CHL00071 tufA elongation facto 99.8 5.2E-19 1.1E-23 137.6 14.5 150 5-164 9-180 (409)
224 COG0370 FeoB Fe2+ transport sy 99.8 7.9E-19 1.7E-23 138.9 14.5 158 7-180 2-167 (653)
225 TIGR00485 EF-Tu translation el 99.8 6.4E-19 1.4E-23 136.6 13.7 149 5-163 9-179 (394)
226 cd04165 GTPBP1_like GTPBP1-lik 99.8 6.4E-19 1.4E-23 126.2 12.7 157 10-174 1-220 (224)
227 KOG0462 Elongation factor-type 99.8 7.4E-19 1.6E-23 135.1 13.3 171 6-186 58-244 (650)
228 cd04167 Snu114p Snu114p subfam 99.8 6.7E-19 1.4E-23 125.9 12.4 113 10-130 2-136 (213)
229 PRK00049 elongation factor Tu; 99.8 2.1E-18 4.6E-23 133.5 15.0 162 6-177 10-203 (396)
230 PLN03126 Elongation factor Tu; 99.8 2.1E-18 4.5E-23 135.6 15.0 149 5-163 78-248 (478)
231 COG2262 HflX GTPases [General 99.8 3.1E-18 6.7E-23 128.2 15.0 163 6-182 190-361 (411)
232 cd04104 p47_IIGP_like p47 (47- 99.8 5.2E-18 1.1E-22 119.8 14.8 162 8-181 1-188 (197)
233 PLN03127 Elongation factor Tu; 99.8 4.1E-18 8.8E-23 133.2 15.4 162 6-177 59-252 (447)
234 cd01885 EF2 EF2 (for archaea a 99.8 3E-18 6.5E-23 122.3 13.2 113 10-130 2-138 (222)
235 KOG0072 GTP-binding ADP-ribosy 99.8 2.4E-19 5.2E-24 114.7 6.2 164 7-178 17-180 (182)
236 KOG1707 Predicted Ras related/ 99.8 4.7E-19 1E-23 137.0 8.7 168 7-179 8-177 (625)
237 PLN00043 elongation factor 1-a 99.8 4.5E-19 9.9E-24 138.7 8.1 153 5-167 4-203 (447)
238 COG0532 InfB Translation initi 99.8 8.5E-18 1.8E-22 129.6 14.6 164 8-179 5-172 (509)
239 PTZ00327 eukaryotic translatio 99.8 5.1E-18 1.1E-22 132.5 13.1 168 4-178 30-234 (460)
240 PRK05124 cysN sulfate adenylyl 99.8 1.2E-17 2.5E-22 131.8 14.8 155 5-168 24-216 (474)
241 PTZ00141 elongation factor 1- 99.8 8.1E-18 1.8E-22 131.7 13.6 154 5-167 4-203 (446)
242 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 3.7E-18 8E-23 121.7 10.0 175 10-188 1-187 (232)
243 COG0536 Obg Predicted GTPase [ 99.8 1.8E-17 3.9E-22 121.2 13.5 167 9-180 160-336 (369)
244 cd04169 RF3 RF3 subfamily. Pe 99.8 3.4E-17 7.5E-22 120.3 15.0 116 9-132 3-138 (267)
245 cd01886 EF-G Elongation factor 99.8 1.3E-17 2.8E-22 122.6 12.6 140 10-160 1-158 (270)
246 cd01850 CDC_Septin CDC/Septin. 99.8 3.5E-17 7.6E-22 120.8 15.0 146 7-161 3-186 (276)
247 COG0481 LepA Membrane GTPase L 99.8 3.1E-17 6.7E-22 124.5 14.4 174 6-189 7-198 (603)
248 TIGR02034 CysN sulfate adenyly 99.8 1.6E-17 3.5E-22 129.1 13.1 150 9-167 1-187 (406)
249 cd01899 Ygr210 Ygr210 subfamil 99.8 6.7E-17 1.5E-21 121.0 15.5 166 11-182 1-274 (318)
250 PRK00741 prfC peptide chain re 99.7 1.9E-16 4.1E-21 126.1 15.5 118 7-132 9-146 (526)
251 COG3596 Predicted GTPase [Gene 99.7 2.7E-17 5.9E-22 117.1 9.2 166 6-181 37-226 (296)
252 COG5257 GCD11 Translation init 99.7 2.4E-17 5.2E-22 119.5 8.9 190 6-203 8-226 (415)
253 KOG1490 GTP-binding protein CR 99.7 1.7E-17 3.8E-22 126.5 8.4 168 4-178 164-342 (620)
254 PRK05506 bifunctional sulfate 99.7 8.3E-17 1.8E-21 131.7 13.0 153 6-167 22-211 (632)
255 KOG1145 Mitochondrial translat 99.7 2.9E-16 6.3E-21 121.1 14.6 161 7-176 152-315 (683)
256 PF09439 SRPRB: Signal recogni 99.7 1.3E-17 2.8E-22 114.0 6.5 120 9-133 4-128 (181)
257 PF01926 MMR_HSR1: 50S ribosom 99.7 2.2E-16 4.7E-21 102.3 11.9 106 10-126 1-116 (116)
258 PRK13351 elongation factor G; 99.7 1.5E-16 3.2E-21 131.5 13.2 116 7-132 7-140 (687)
259 cd04170 EF-G_bact Elongation f 99.7 3E-16 6.5E-21 116.0 13.4 154 10-178 1-174 (268)
260 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 5.6E-16 1.2E-20 109.4 13.6 166 9-181 1-188 (196)
261 PRK09602 translation-associate 99.7 4.1E-16 8.8E-21 120.1 13.9 170 9-185 2-279 (396)
262 KOG0090 Signal recognition par 99.7 2.2E-16 4.8E-21 108.1 10.2 164 5-175 35-237 (238)
263 PRK12739 elongation factor G; 99.7 1.9E-15 4.1E-20 124.7 16.1 116 7-132 7-140 (691)
264 KOG1191 Mitochondrial GTPase [ 99.7 5.2E-16 1.1E-20 118.4 11.0 174 5-181 265-454 (531)
265 TIGR00484 EF-G translation elo 99.7 1E-15 2.3E-20 126.3 13.6 117 6-132 8-142 (689)
266 KOG0077 Vesicle coat complex C 99.7 2.9E-16 6.2E-21 103.2 7.7 156 8-175 20-191 (193)
267 TIGR00503 prfC peptide chain r 99.7 2.7E-16 5.9E-21 125.2 9.2 119 6-132 9-147 (527)
268 COG4917 EutP Ethanolamine util 99.7 2.7E-16 5.9E-21 98.5 6.9 137 10-174 3-143 (148)
269 COG5256 TEF1 Translation elong 99.7 7.9E-16 1.7E-20 115.4 10.3 154 6-167 5-201 (428)
270 PRK09866 hypothetical protein; 99.7 1.1E-14 2.3E-19 115.7 16.9 110 58-175 231-351 (741)
271 KOG0461 Selenocysteine-specifi 99.6 1.1E-14 2.5E-19 106.8 14.2 171 8-186 7-202 (522)
272 COG1217 TypA Predicted membran 99.6 8.1E-15 1.7E-19 111.3 13.5 175 7-189 4-207 (603)
273 PRK00007 elongation factor G; 99.6 3.4E-15 7.5E-20 123.2 11.6 117 6-132 8-142 (693)
274 PRK12740 elongation factor G; 99.6 1.3E-14 2.8E-19 119.9 13.8 109 14-132 1-127 (668)
275 TIGR00490 aEF-2 translation el 99.6 5.7E-15 1.2E-19 122.3 11.1 119 6-132 17-153 (720)
276 KOG1532 GTPase XAB1, interacts 99.6 2.2E-15 4.8E-20 107.2 6.6 173 5-181 16-268 (366)
277 PRK14845 translation initiatio 99.6 3.2E-14 6.9E-19 119.9 14.1 147 19-176 472-672 (1049)
278 KOG1486 GTP-binding protein DR 99.6 3.1E-13 6.7E-18 95.3 16.7 175 8-195 62-311 (364)
279 PTZ00258 GTP-binding protein; 99.6 4.9E-14 1.1E-18 107.7 13.8 87 5-91 18-126 (390)
280 PRK07560 elongation factor EF- 99.6 2.2E-14 4.8E-19 119.1 11.9 119 6-132 18-154 (731)
281 PF04548 AIG1: AIG1 family; I 99.6 3.1E-14 6.7E-19 101.6 10.2 166 9-181 1-190 (212)
282 cd01853 Toc34_like Toc34-like 99.6 1.3E-13 2.8E-18 100.1 13.5 124 5-133 28-165 (249)
283 PRK13768 GTPase; Provisional 99.6 1.9E-14 4.2E-19 105.1 9.0 115 58-177 98-247 (253)
284 COG3276 SelB Selenocysteine-sp 99.6 4.4E-14 9.5E-19 106.9 10.4 180 10-204 2-187 (447)
285 COG2895 CysN GTPases - Sulfate 99.5 2.1E-13 4.6E-18 100.4 12.3 149 6-166 4-192 (431)
286 TIGR00991 3a0901s02IAP34 GTP-b 99.5 4.4E-13 9.5E-18 99.0 13.5 125 4-132 34-168 (313)
287 PF03029 ATP_bind_1: Conserved 99.5 7.8E-15 1.7E-19 105.9 4.3 115 58-176 92-236 (238)
288 PLN00116 translation elongatio 99.5 5.8E-14 1.3E-18 118.0 9.4 118 5-130 16-163 (843)
289 PRK09435 membrane ATPase/prote 99.5 3.9E-13 8.4E-18 101.0 12.0 109 57-180 149-263 (332)
290 PRK09601 GTP-binding protein Y 99.5 9.4E-13 2E-17 99.6 13.9 83 9-91 3-107 (364)
291 TIGR00101 ureG urease accessor 99.5 1E-12 2.2E-17 92.6 13.2 104 57-177 92-196 (199)
292 cd01882 BMS1 Bms1. Bms1 is an 99.5 8.4E-13 1.8E-17 95.0 12.4 142 6-163 37-182 (225)
293 KOG1707 Predicted Ras related/ 99.5 2.8E-12 6.2E-17 100.0 16.0 164 6-180 423-586 (625)
294 PTZ00416 elongation factor 2; 99.5 1.5E-13 3.2E-18 115.4 9.6 117 6-130 17-157 (836)
295 PF00735 Septin: Septin; Inte 99.5 8E-13 1.7E-17 97.7 11.6 140 7-156 3-180 (281)
296 PF00350 Dynamin_N: Dynamin fa 99.5 1.7E-12 3.7E-17 89.5 11.2 63 58-127 102-168 (168)
297 KOG3886 GTP-binding protein [S 99.4 4.6E-13 9.9E-18 93.2 8.1 152 8-162 4-164 (295)
298 cd00066 G-alpha G protein alph 99.4 6.6E-12 1.4E-16 94.8 15.1 125 56-180 160-314 (317)
299 KOG3905 Dynein light intermedi 99.4 3.9E-12 8.4E-17 93.0 12.9 175 9-187 53-300 (473)
300 KOG1144 Translation initiation 99.4 1.1E-12 2.3E-17 104.8 10.3 162 8-177 475-687 (1064)
301 TIGR02836 spore_IV_A stage IV 99.4 9.1E-12 2E-16 94.6 14.6 174 8-196 17-254 (492)
302 KOG0458 Elongation factor 1 al 99.4 1.3E-12 2.7E-17 102.0 10.1 154 7-168 176-373 (603)
303 cd01900 YchF YchF subfamily. 99.4 6.5E-13 1.4E-17 97.4 8.1 81 11-91 1-103 (274)
304 PF05783 DLIC: Dynein light in 99.4 1.2E-11 2.6E-16 96.9 15.6 178 8-189 25-276 (472)
305 PF05049 IIGP: Interferon-indu 99.4 1.5E-12 3.3E-17 98.5 10.2 164 6-180 33-221 (376)
306 COG0050 TufB GTPases - transla 99.4 4.2E-12 9.1E-17 91.6 11.7 182 5-194 9-214 (394)
307 COG0378 HypB Ni2+-binding GTPa 99.4 2.2E-12 4.8E-17 88.0 8.8 152 8-176 13-200 (202)
308 TIGR00073 hypB hydrogenase acc 99.4 1.2E-11 2.6E-16 88.1 13.0 152 7-175 21-205 (207)
309 smart00275 G_alpha G protein a 99.4 2.6E-11 5.6E-16 92.3 15.1 123 57-179 184-336 (342)
310 COG0480 FusA Translation elong 99.4 3.3E-12 7.2E-17 104.2 10.3 123 6-137 8-148 (697)
311 TIGR00157 ribosome small subun 99.4 5.2E-12 1.1E-16 91.9 10.3 97 67-174 23-120 (245)
312 TIGR00750 lao LAO/AO transport 99.4 2.4E-11 5.3E-16 91.2 13.7 107 56-177 126-238 (300)
313 KOG0466 Translation initiation 99.4 3.9E-13 8.4E-18 97.4 3.7 193 5-205 35-267 (466)
314 TIGR00993 3a0901s04IAP86 chlor 99.3 2.3E-11 5E-16 97.3 12.7 121 7-132 117-251 (763)
315 smart00053 DYNc Dynamin, GTPas 99.3 2.1E-11 4.5E-16 87.8 11.4 69 57-132 125-207 (240)
316 KOG1487 GTP-binding protein DR 99.3 2.3E-11 5E-16 86.3 11.3 173 9-194 60-303 (358)
317 COG0012 Predicted GTPase, prob 99.3 3.9E-11 8.5E-16 89.8 13.0 84 8-91 2-108 (372)
318 COG5019 CDC3 Septin family pro 99.3 7.2E-11 1.6E-15 87.9 14.1 144 4-156 19-200 (373)
319 KOG0410 Predicted GTP binding 99.3 5E-12 1.1E-16 92.3 7.3 157 7-178 177-342 (410)
320 KOG1547 Septin CDC10 and relat 99.3 6.2E-11 1.3E-15 83.3 11.4 146 7-161 45-227 (336)
321 COG4108 PrfC Peptide chain rel 99.3 2.2E-11 4.8E-16 92.3 9.8 113 9-131 13-147 (528)
322 KOG2655 Septin family protein 99.3 1.3E-10 2.9E-15 87.1 13.6 147 5-161 18-201 (366)
323 KOG0082 G-protein alpha subuni 99.3 5.7E-10 1.2E-14 83.7 15.9 124 57-181 195-348 (354)
324 smart00010 small_GTPase Small 99.3 1E-10 2.2E-15 76.3 10.6 114 9-166 1-115 (124)
325 KOG0468 U5 snRNP-specific prot 99.3 3.7E-11 7.9E-16 95.3 9.6 116 6-129 126-261 (971)
326 PRK10463 hydrogenase nickel in 99.2 9.5E-11 2.1E-15 86.1 9.3 57 117-175 230-287 (290)
327 PF03308 ArgK: ArgK protein; 99.2 2.2E-11 4.7E-16 87.2 5.7 152 7-176 28-229 (266)
328 KOG0705 GTPase-activating prot 99.1 1.5E-10 3.3E-15 90.0 7.7 168 5-182 27-194 (749)
329 COG1703 ArgK Putative periplas 99.1 6.2E-10 1.4E-14 80.9 10.4 161 7-182 50-259 (323)
330 KOG0460 Mitochondrial translat 99.1 1.2E-09 2.5E-14 80.7 11.2 180 5-193 51-257 (449)
331 COG5258 GTPBP1 GTPase [General 99.1 1.2E-09 2.6E-14 81.9 9.8 164 7-179 116-340 (527)
332 KOG0463 GTP-binding protein GP 99.1 6E-10 1.3E-14 83.4 7.6 182 7-198 132-377 (641)
333 cd01855 YqeH YqeH. YqeH is an 99.1 1E-09 2.2E-14 77.2 8.0 96 69-177 23-125 (190)
334 KOG1143 Predicted translation 99.0 2.7E-09 5.8E-14 79.9 9.7 155 7-169 166-380 (591)
335 KOG1954 Endocytosis/signaling 99.0 2.2E-09 4.8E-14 80.1 8.6 118 8-132 58-226 (532)
336 cd01859 MJ1464 MJ1464. This f 99.0 2.3E-09 5E-14 73.0 7.7 95 71-178 3-97 (156)
337 cd01854 YjeQ_engC YjeQ/EngC. 99.0 6.7E-09 1.5E-13 77.5 9.8 89 74-174 72-161 (287)
338 PRK12289 GTPase RsgA; Reviewed 98.9 9.2E-09 2E-13 78.4 10.0 89 74-174 83-172 (352)
339 KOG2486 Predicted GTPase [Gene 98.9 3.9E-09 8.4E-14 75.9 7.1 157 5-174 133-313 (320)
340 KOG3887 Predicted small GTPase 98.9 3.1E-09 6.7E-14 75.0 6.4 171 8-185 27-210 (347)
341 TIGR00092 GTP-binding protein 98.9 1.1E-08 2.4E-13 77.9 9.7 83 9-91 3-108 (368)
342 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 3.9E-09 8.4E-14 70.6 6.4 53 10-67 85-138 (141)
343 cd04178 Nucleostemin_like Nucl 98.9 3.5E-09 7.5E-14 73.0 6.0 54 8-66 117-171 (172)
344 PRK12288 GTPase RsgA; Reviewed 98.9 1.7E-08 3.7E-13 76.9 10.3 89 77-174 117-205 (347)
345 PRK00098 GTPase RsgA; Reviewed 98.9 1E-08 2.2E-13 76.9 9.0 87 76-173 76-163 (298)
346 KOG1491 Predicted GTP-binding 98.9 6.6E-09 1.4E-13 76.8 7.1 88 4-91 16-125 (391)
347 cd01858 NGP_1 NGP-1. Autoanti 98.9 8.8E-09 1.9E-13 70.2 6.9 55 7-66 101-156 (157)
348 COG5192 BMS1 GTP-binding prote 98.8 4E-08 8.7E-13 77.4 10.0 139 6-162 67-211 (1077)
349 TIGR03597 GTPase_YqeH ribosome 98.8 2.6E-08 5.6E-13 76.7 8.2 96 67-175 50-151 (360)
350 PF00503 G-alpha: G-protein al 98.8 4.4E-08 9.6E-13 76.4 9.5 119 57-175 236-388 (389)
351 cd01855 YqeH YqeH. YqeH is an 98.8 9.6E-09 2.1E-13 72.2 5.1 54 8-66 127-189 (190)
352 cd01851 GBP Guanylate-binding 98.8 1.3E-07 2.8E-12 68.1 10.3 88 5-92 4-103 (224)
353 KOG0467 Translation elongation 98.8 3.6E-08 7.8E-13 79.8 7.9 116 6-129 7-136 (887)
354 cd01856 YlqF YlqF. Proteins o 98.8 3E-08 6.6E-13 68.5 6.7 56 7-67 114-170 (171)
355 TIGR03596 GTPase_YlqF ribosome 98.7 4.7E-08 1E-12 72.7 7.2 56 7-67 117-173 (276)
356 PRK09563 rbgA GTPase YlqF; Rev 98.7 6.3E-08 1.4E-12 72.4 7.8 56 7-67 120-176 (287)
357 KOG0448 Mitofusin 1 GTPase, in 98.7 3.6E-07 7.8E-12 73.4 12.2 118 7-132 108-276 (749)
358 cd01856 YlqF YlqF. Proteins o 98.7 5.9E-08 1.3E-12 67.1 7.0 91 72-177 11-101 (171)
359 cd01858 NGP_1 NGP-1. Autoanti 98.7 9.8E-08 2.1E-12 65.0 7.9 91 76-176 4-94 (157)
360 cd01849 YlqF_related_GTPase Yl 98.7 4.7E-08 1E-12 66.4 6.2 55 7-66 99-154 (155)
361 KOG3859 Septins (P-loop GTPase 98.7 5.3E-08 1.1E-12 70.3 6.2 118 6-132 40-191 (406)
362 KOG0465 Mitochondrial elongati 98.7 7.8E-08 1.7E-12 76.2 7.3 119 7-133 38-172 (721)
363 COG1161 Predicted GTPases [Gen 98.7 6.7E-08 1.4E-12 73.2 6.4 55 8-67 132-187 (322)
364 cd01859 MJ1464 MJ1464. This f 98.7 1.1E-07 2.4E-12 64.7 6.9 55 8-66 101-155 (156)
365 TIGR03348 VI_IcmF type VI secr 98.6 2.8E-07 6.1E-12 80.9 10.4 113 11-132 114-258 (1169)
366 cd01849 YlqF_related_GTPase Yl 98.6 3.1E-07 6.7E-12 62.4 8.6 84 82-176 1-84 (155)
367 PF03193 DUF258: Protein of un 98.6 3.6E-08 7.8E-13 66.5 3.7 24 9-32 36-59 (161)
368 cd03112 CobW_like The function 98.6 2.8E-07 6E-12 62.8 7.1 21 11-31 3-23 (158)
369 TIGR03596 GTPase_YlqF ribosome 98.6 3E-07 6.5E-12 68.4 7.6 102 64-180 4-106 (276)
370 TIGR01425 SRP54_euk signal rec 98.5 1.3E-06 2.8E-11 68.1 10.8 22 8-29 100-121 (429)
371 PF09547 Spore_IV_A: Stage IV 98.5 5.9E-06 1.3E-10 63.6 13.9 176 8-196 17-254 (492)
372 KOG0447 Dynamin-like GTP bindi 98.5 1.4E-06 3.1E-11 68.7 10.8 82 58-147 413-507 (980)
373 PRK10416 signal recognition pa 98.5 6.1E-07 1.3E-11 67.8 8.4 95 56-169 196-302 (318)
374 COG1618 Predicted nucleotide k 98.5 2.7E-06 5.8E-11 56.8 10.3 56 7-65 4-59 (179)
375 KOG0464 Elongation factor G [T 98.5 3.7E-08 8.1E-13 74.9 1.0 117 8-132 37-169 (753)
376 PRK01889 GTPase RsgA; Reviewed 98.5 1.5E-06 3.2E-11 66.9 9.7 85 77-173 109-193 (356)
377 TIGR00064 ftsY signal recognit 98.5 9E-07 2E-11 65.5 7.8 96 56-170 154-261 (272)
378 PRK14974 cell division protein 98.5 2.9E-07 6.4E-12 69.8 5.3 94 57-170 223-323 (336)
379 PRK12288 GTPase RsgA; Reviewed 98.5 5.4E-07 1.2E-11 68.9 6.7 22 11-32 208-229 (347)
380 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 7E-07 1.5E-11 59.7 6.4 76 75-163 6-83 (141)
381 TIGR03597 GTPase_YqeH ribosome 98.4 6.4E-07 1.4E-11 69.1 6.3 54 9-67 155-214 (360)
382 PRK13796 GTPase YqeH; Provisio 98.4 1.6E-06 3.5E-11 66.9 8.5 93 69-175 58-157 (365)
383 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.1E-06 2.4E-11 65.8 7.1 101 64-179 7-108 (287)
384 PRK13796 GTPase YqeH; Provisio 98.4 6.3E-07 1.4E-11 69.2 5.6 55 9-68 161-221 (365)
385 TIGR00157 ribosome small subun 98.4 8.6E-07 1.9E-11 64.7 6.0 23 10-32 122-144 (245)
386 PRK12289 GTPase RsgA; Reviewed 98.4 7.1E-07 1.5E-11 68.3 5.7 22 11-32 175-196 (352)
387 COG1162 Predicted GTPases [Gen 98.3 1.5E-06 3.3E-11 64.1 5.6 59 10-71 166-230 (301)
388 KOG1534 Putative transcription 98.3 4.1E-06 8.9E-11 58.3 7.3 115 58-176 99-250 (273)
389 KOG0459 Polypeptide release fa 98.3 1.9E-06 4E-11 65.5 5.8 158 6-170 77-279 (501)
390 PF00448 SRP54: SRP54-type pro 98.3 3.6E-06 7.8E-11 59.3 6.8 90 57-166 84-180 (196)
391 KOG0099 G protein subunit Galp 98.3 1.8E-06 3.9E-11 62.0 5.1 75 56-130 201-282 (379)
392 PRK12727 flagellar biosynthesi 98.2 1.8E-05 3.8E-10 63.2 10.6 22 9-30 351-372 (559)
393 KOG1424 Predicted GTP-binding 98.2 2.2E-06 4.7E-11 67.0 5.1 54 8-66 314-368 (562)
394 KOG0469 Elongation factor 2 [T 98.2 1E-05 2.2E-10 63.4 8.1 119 4-130 15-163 (842)
395 cd01854 YjeQ_engC YjeQ/EngC. 98.2 5.5E-06 1.2E-10 62.0 6.6 25 9-33 162-186 (287)
396 cd03114 ArgK-like The function 98.2 6.6E-06 1.4E-10 55.3 6.0 58 56-128 91-148 (148)
397 COG3523 IcmF Type VI protein s 98.1 8.9E-06 1.9E-10 70.4 7.8 113 12-132 129-271 (1188)
398 PRK00098 GTPase RsgA; Reviewed 98.1 6.6E-06 1.4E-10 61.9 6.1 23 10-32 166-188 (298)
399 PRK14722 flhF flagellar biosyn 98.1 2.9E-05 6.3E-10 59.8 9.2 23 9-31 138-160 (374)
400 PF06858 NOG1: Nucleolar GTP-b 98.1 1.8E-05 4E-10 43.2 5.8 44 80-128 13-58 (58)
401 KOG1533 Predicted GTPase [Gene 98.1 1E-05 2.2E-10 57.3 6.0 70 57-132 97-178 (290)
402 COG1162 Predicted GTPases [Gen 98.1 5.4E-05 1.2E-09 56.1 9.7 91 75-175 74-165 (301)
403 cd03115 SRP The signal recogni 98.1 5E-05 1.1E-09 52.5 9.1 66 57-132 83-154 (173)
404 PRK00771 signal recognition pa 98.1 8.1E-06 1.8E-10 64.2 5.7 23 7-29 94-116 (437)
405 PRK11889 flhF flagellar biosyn 98.1 6.2E-05 1.3E-09 58.1 10.0 23 8-30 241-263 (436)
406 PF03266 NTPase_1: NTPase; In 98.1 3.8E-05 8.3E-10 52.7 8.2 135 10-165 1-163 (168)
407 PRK14721 flhF flagellar biosyn 98.0 2.6E-05 5.7E-10 61.0 8.0 23 9-31 192-214 (420)
408 KOG0085 G protein subunit Galp 98.0 1E-05 2.3E-10 57.2 5.0 122 57-181 199-353 (359)
409 PRK10867 signal recognition pa 98.0 7.1E-05 1.5E-09 58.9 9.9 22 8-29 100-121 (433)
410 PRK11537 putative GTP-binding 98.0 0.00014 3.1E-09 55.1 10.9 97 57-169 91-196 (318)
411 PRK13695 putative NTPase; Prov 98.0 0.00033 7.1E-09 48.5 11.9 21 10-30 2-22 (174)
412 COG1419 FlhF Flagellar GTP-bin 98.0 9.3E-05 2E-09 57.0 9.2 156 8-181 203-398 (407)
413 PRK05703 flhF flagellar biosyn 97.9 7.2E-05 1.6E-09 59.0 8.9 21 10-30 223-243 (424)
414 TIGR00959 ffh signal recogniti 97.9 0.00014 3E-09 57.3 10.3 86 57-159 183-274 (428)
415 PRK12723 flagellar biosynthesi 97.9 9.8E-05 2.1E-09 57.4 9.2 23 8-30 174-196 (388)
416 COG0523 Putative GTPases (G3E 97.9 0.00039 8.5E-09 52.7 12.2 101 57-171 85-195 (323)
417 PF02492 cobW: CobW/HypB/UreG, 97.9 3.2E-05 7E-10 53.8 5.9 80 57-149 85-170 (178)
418 KOG4273 Uncharacterized conser 97.9 0.00011 2.3E-09 52.8 8.2 115 9-132 5-124 (418)
419 KOG2484 GTPase [General functi 97.9 1.2E-05 2.5E-10 61.2 3.5 57 6-67 250-307 (435)
420 PRK14723 flhF flagellar biosyn 97.9 0.00016 3.5E-09 60.5 10.4 23 9-31 186-208 (767)
421 KOG2485 Conserved ATP/GTP bind 97.9 2.1E-05 4.6E-10 58.0 4.7 59 6-66 141-205 (335)
422 cd02038 FleN-like FleN is a me 97.9 9.6E-05 2.1E-09 49.2 7.3 106 13-130 5-110 (139)
423 PRK06995 flhF flagellar biosyn 97.8 0.00017 3.7E-09 57.4 9.4 22 9-30 257-278 (484)
424 PRK12726 flagellar biosynthesi 97.8 7.5E-05 1.6E-09 57.4 6.6 23 8-30 206-228 (407)
425 PF13207 AAA_17: AAA domain; P 97.8 2.5E-05 5.5E-10 50.6 3.0 22 10-31 1-22 (121)
426 COG3640 CooC CO dehydrogenase 97.8 0.0001 2.2E-09 52.5 6.1 48 75-130 150-198 (255)
427 PRK08118 topology modulation p 97.7 2.6E-05 5.7E-10 53.6 3.1 22 10-31 3-24 (167)
428 cd02042 ParA ParA and ParB of 97.7 0.00012 2.6E-09 46.1 6.0 82 11-104 2-84 (104)
429 PF13555 AAA_29: P-loop contai 97.7 4.7E-05 1E-09 42.7 3.1 21 11-31 26-46 (62)
430 PRK07261 topology modulation p 97.7 3.5E-05 7.6E-10 53.2 3.1 22 10-31 2-23 (171)
431 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.00033 7.2E-09 43.1 7.2 69 11-93 2-71 (99)
432 COG0563 Adk Adenylate kinase a 97.7 3.4E-05 7.3E-10 53.5 2.8 22 10-31 2-23 (178)
433 TIGR02475 CobW cobalamin biosy 97.7 0.0018 3.9E-08 49.8 12.1 21 11-31 7-27 (341)
434 COG1116 TauB ABC-type nitrate/ 97.6 4.3E-05 9.3E-10 54.9 3.0 22 11-32 32-53 (248)
435 PRK06731 flhF flagellar biosyn 97.6 0.00065 1.4E-08 50.3 9.2 22 9-30 76-97 (270)
436 PF13671 AAA_33: AAA domain; P 97.6 4.8E-05 1E-09 50.8 2.9 22 11-32 2-23 (143)
437 COG1136 SalX ABC-type antimicr 97.6 5E-05 1.1E-09 54.3 3.1 23 10-32 33-55 (226)
438 KOG2423 Nucleolar GTPase [Gene 97.6 2.3E-05 5E-10 59.7 1.4 82 5-94 304-388 (572)
439 PRK12724 flagellar biosynthesi 97.6 0.00025 5.4E-09 55.4 6.6 22 9-30 224-245 (432)
440 COG1126 GlnQ ABC-type polar am 97.6 7.2E-05 1.6E-09 52.6 3.0 23 10-32 30-52 (240)
441 COG0194 Gmk Guanylate kinase [ 97.5 5E-05 1.1E-09 52.2 2.1 24 9-32 5-28 (191)
442 cd02019 NK Nucleoside/nucleoti 97.5 9.2E-05 2E-09 42.9 3.0 21 11-31 2-22 (69)
443 PF03215 Rad17: Rad17 cell cyc 97.5 0.0014 3.1E-08 53.0 10.4 22 11-32 48-69 (519)
444 PF13521 AAA_28: AAA domain; P 97.5 6E-05 1.3E-09 51.6 2.1 22 10-31 1-22 (163)
445 cd00009 AAA The AAA+ (ATPases 97.5 0.00084 1.8E-08 44.5 7.7 25 8-32 19-43 (151)
446 TIGR00150 HI0065_YjeE ATPase, 97.5 0.00045 9.8E-09 45.3 5.9 23 10-32 24-46 (133)
447 PRK14530 adenylate kinase; Pro 97.5 0.00011 2.3E-09 52.8 3.2 23 9-31 4-26 (215)
448 PRK05480 uridine/cytidine kina 97.5 0.00014 3E-09 51.9 3.7 25 7-31 5-29 (209)
449 PF00005 ABC_tran: ABC transpo 97.5 0.00011 2.4E-09 48.6 3.0 23 10-32 13-35 (137)
450 PF05621 TniB: Bacterial TniB 97.4 0.00076 1.6E-08 50.2 7.2 104 7-127 60-190 (302)
451 KOG0446 Vacuolar sorting prote 97.4 3.7E-05 7.9E-10 63.5 0.4 102 57-167 132-246 (657)
452 PF04665 Pox_A32: Poxvirus A32 97.4 0.00013 2.8E-09 52.8 3.1 26 6-31 11-36 (241)
453 PRK06217 hypothetical protein; 97.4 0.00013 2.8E-09 51.0 3.0 23 9-31 2-24 (183)
454 PF05729 NACHT: NACHT domain 97.4 0.00029 6.2E-09 48.1 4.6 22 11-32 3-24 (166)
455 cd00071 GMPK Guanosine monopho 97.4 0.00015 3.3E-09 48.1 3.0 21 11-31 2-22 (137)
456 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00017 3.6E-09 45.4 2.9 20 10-29 17-36 (107)
457 COG3840 ThiQ ABC-type thiamine 97.4 0.00017 3.7E-09 49.5 3.0 21 10-30 27-47 (231)
458 PRK10078 ribose 1,5-bisphospho 97.4 0.00017 3.7E-09 50.5 3.1 23 10-32 4-26 (186)
459 PRK14737 gmk guanylate kinase; 97.4 0.00018 3.8E-09 50.4 3.1 24 9-32 5-28 (186)
460 COG1161 Predicted GTPases [Gen 97.4 0.0005 1.1E-08 52.4 5.7 94 63-170 16-110 (322)
461 PRK10751 molybdopterin-guanine 97.4 0.00022 4.7E-09 49.1 3.5 23 9-31 7-29 (173)
462 PF13238 AAA_18: AAA domain; P 97.4 0.00017 3.6E-09 47.1 2.8 21 11-31 1-21 (129)
463 TIGR00235 udk uridine kinase. 97.4 0.00021 4.6E-09 50.9 3.6 25 7-31 5-29 (207)
464 smart00382 AAA ATPases associa 97.4 0.00021 4.6E-09 47.1 3.3 26 9-34 3-28 (148)
465 PRK03839 putative kinase; Prov 97.3 0.00017 3.7E-09 50.2 2.9 22 10-31 2-23 (180)
466 PF02367 UPF0079: Uncharacteri 97.3 0.00072 1.6E-08 43.8 5.4 24 9-32 16-39 (123)
467 TIGR02322 phosphon_PhnN phosph 97.3 0.00019 4.1E-09 49.9 3.0 22 10-31 3-24 (179)
468 PRK08233 hypothetical protein; 97.3 0.00022 4.8E-09 49.6 3.4 24 8-31 3-26 (182)
469 PRK14531 adenylate kinase; Pro 97.3 0.00021 4.5E-09 50.0 3.2 24 8-31 2-25 (183)
470 PF00004 AAA: ATPase family as 97.3 0.0002 4.3E-09 46.9 2.9 22 11-32 1-22 (132)
471 cd03111 CpaE_like This protein 97.3 0.00084 1.8E-08 42.4 5.6 100 15-126 7-106 (106)
472 cd02023 UMPK Uridine monophosp 97.3 0.0002 4.3E-09 50.7 3.0 21 11-31 2-22 (198)
473 COG3839 MalK ABC-type sugar tr 97.3 0.0002 4.4E-09 54.3 3.0 21 11-31 32-52 (338)
474 cd04178 Nucleostemin_like Nucl 97.3 0.0012 2.7E-08 45.5 6.7 44 82-131 1-44 (172)
475 TIGR03263 guanyl_kin guanylate 97.3 0.00023 5.1E-09 49.5 3.1 23 10-32 3-25 (180)
476 cd01130 VirB11-like_ATPase Typ 97.3 0.00026 5.7E-09 49.6 3.2 24 9-32 26-49 (186)
477 COG1120 FepC ABC-type cobalami 97.3 0.00024 5.2E-09 51.9 3.0 20 11-30 31-50 (258)
478 PRK14738 gmk guanylate kinase; 97.3 0.00043 9.4E-09 49.3 4.3 25 7-31 12-36 (206)
479 cd03238 ABC_UvrA The excision 97.3 0.00029 6.4E-09 48.8 3.3 21 9-29 22-42 (176)
480 KOG0780 Signal recognition par 97.3 0.00028 6E-09 53.9 3.3 43 55-97 182-230 (483)
481 PRK13949 shikimate kinase; Pro 97.3 0.00028 6.1E-09 48.6 3.1 22 10-31 3-24 (169)
482 KOG4181 Uncharacterized conser 97.3 0.0015 3.3E-08 49.3 7.0 25 8-32 188-212 (491)
483 PF03205 MobB: Molybdopterin g 97.3 0.00028 6.2E-09 46.9 3.0 23 10-32 2-24 (140)
484 PRK10646 ADP-binding protein; 97.3 0.0019 4.2E-08 43.4 7.0 24 10-33 30-53 (153)
485 PTZ00088 adenylate kinase 1; P 97.3 0.00028 6E-09 51.0 3.2 25 7-31 5-29 (229)
486 cd03222 ABC_RNaseL_inhibitor T 97.3 0.00027 5.9E-09 49.0 3.0 23 10-32 27-49 (177)
487 cd01131 PilT Pilus retraction 97.2 0.00026 5.7E-09 50.1 3.0 22 11-32 4-25 (198)
488 COG1117 PstB ABC-type phosphat 97.2 0.00023 5.1E-09 50.1 2.6 20 11-30 36-55 (253)
489 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00028 6E-09 49.4 3.0 22 9-30 4-25 (188)
490 PRK01889 GTPase RsgA; Reviewed 97.2 0.00046 1E-08 53.3 4.4 24 9-32 196-219 (356)
491 cd02025 PanK Pantothenate kina 97.2 0.00026 5.7E-09 50.9 2.8 21 11-31 2-22 (220)
492 COG4525 TauB ABC-type taurine 97.2 0.0003 6.5E-09 48.9 2.9 21 10-30 33-53 (259)
493 COG3638 ABC-type phosphate/pho 97.2 0.0003 6.6E-09 50.2 3.0 21 10-30 32-52 (258)
494 cd03110 Fer4_NifH_child This p 97.2 0.004 8.6E-08 43.3 8.5 85 55-155 91-175 (179)
495 KOG3347 Predicted nucleotide k 97.2 0.0003 6.6E-09 46.5 2.6 26 6-31 5-30 (176)
496 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.00036 7.9E-09 50.1 3.3 23 10-32 32-54 (218)
497 COG0541 Ffh Signal recognition 97.2 0.00059 1.3E-08 53.0 4.5 24 6-29 98-121 (451)
498 PRK05057 aroK shikimate kinase 97.2 0.00043 9.3E-09 47.9 3.5 23 9-31 5-27 (172)
499 cd03225 ABC_cobalt_CbiO_domain 97.2 0.00037 8.1E-09 49.8 3.3 23 10-32 29-51 (211)
500 PRK00300 gmk guanylate kinase; 97.2 0.00033 7.2E-09 49.8 3.0 23 9-31 6-28 (205)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.8e-43 Score=233.17 Aligned_cols=198 Identities=38% Similarity=0.696 Sum_probs=177.8
Q ss_pred CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec
Q 028654 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 80 (206)
|+..-++.+||+++|.+|+|||.|+.+|....|...+..|.+.++..+.+.++++.+.+++|||.||++|+.....++++
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCc-EEEeec
Q 028654 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIP-YFETSA 159 (206)
Q Consensus 81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 159 (206)
+|++|+|||+++.++|..+..|+.++.++... ++|.++|+||+|+.+. +.+..++.+.|+...+ .+ ++++||
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~----~v~~lLVGNK~Dl~~~--~~v~~~~a~~fa~~~~-~~~f~ETSA 154 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASE----NVPKLLVGNKCDLTEK--RVVSTEEAQEFADELG-IPIFLETSA 154 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhccC----CCCeEEEeeccccHhh--eecCHHHHHHHHHhcC-Ccceeeccc
Confidence 99999999999999999999999999988765 7899999999999987 8999999999999998 66 999999
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCCCCCC---CCccccCCC-CCccCCCCCC
Q 028654 160 KEGFNVEAAFECIAKNALKNEPQEEDY---LPDTIDVGG-GQQQRSSGCE 205 (206)
Q Consensus 160 ~~~~~i~~l~~~i~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~c~ 205 (206)
+++.++++.|..|...+.++....... .+..+...+ ...+..++||
T Consensus 155 K~~~NVe~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~~~p~~~~~~~~C 204 (205)
T KOG0084|consen 155 KDSTNVEDAFLTLAKELKQRKGLHVKWSTASLESVQLKGTPVKKSNGGCC 204 (205)
T ss_pred CCccCHHHHHHHHHHHHHHhcccCCCCCcCCCCceeeCCCCcccccCCCC
Confidence 999999999999999988776663333 366666666 3456666783
No 2
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.1e-42 Score=227.86 Aligned_cols=206 Identities=77% Similarity=1.185 Sum_probs=184.0
Q ss_pred Ccc-ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccccccee
Q 028654 1 MAS-RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR 79 (206)
Q Consensus 1 ~~~-~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 79 (206)
|+. ++...+||+++|.+|+|||+|+|++...+|...+..+.+.++..+.+.++++.+.+++|||+|+++|.++...+++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 555 4577899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeec
Q 028654 80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA 159 (206)
Q Consensus 80 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (206)
.+|..+++||++++++++.+..|..+++.+.....+...|+||++||+|+.+...++++.+..+.|+...+++||+++||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 99999999999999999999999999999999999899999999999999887789999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCCCC---CCCCccccCCCCCccCCCCCCC
Q 028654 160 KEGFNVEAAFECIAKNALKNEPQEE---DYLPDTIDVGGGQQQRSSGCEC 206 (206)
Q Consensus 160 ~~~~~i~~l~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~c~c 206 (206)
++..|+.++|+.+.+.++.....+. .............+..++||.|
T Consensus 161 K~~~NV~~AFe~ia~~aL~~E~~~~~~~~~~~d~i~~~~~~~~~~~~c~c 210 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARRALANEDREIAELADYSDQIVLSTKANNQSSGCEC 210 (210)
T ss_pred cccccHHHHHHHHHHHHHhccchhhhhhhhcCcccccccccccCCCCCCC
Confidence 9999999999999999998876411 1133333333334444447767
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-40 Score=219.72 Aligned_cols=194 Identities=43% Similarity=0.741 Sum_probs=172.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...+||+++|..++|||||+-++..+.|.....+|++.-+..+.+.+.+..++|.||||.|+++|.++..+|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 45689999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|||+++.+||..+..|..++.+..+. ++-+.+|+||+|+... +++..++...++...+ ..|+++||+++.|+
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~----~~vialvGNK~DL~~~--R~V~~~ea~~yAe~~g-ll~~ETSAKTg~Nv 155 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASP----NIVIALVGNKADLLER--REVEFEEAQAYAESQG-LLFFETSAKTGENV 155 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCC----CeEEEEecchhhhhhc--ccccHHHHHHHHHhcC-CEEEEEecccccCH
Confidence 999999999999999999999887653 6677889999999875 8899999999999987 99999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCC---ccccCCCC-CccCCCCCCC
Q 028654 166 EAAFECIAKNALKNEPQEEDYLP---DTIDVGGG-QQQRSSGCEC 206 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~c~c 206 (206)
+++|..|.+.+++...+..+..+ ..+..... .....++|||
T Consensus 156 ~~if~~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~C~ 200 (200)
T KOG0092|consen 156 NEIFQAIAEKLPCSDPQERQGLPNRRQGVDLNSNQEPARPSGCCA 200 (200)
T ss_pred HHHHHHHHHhccCccccccccccccccceecccCCCCcCcCCcCC
Confidence 99999999999998888665333 44444433 3445678844
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-38 Score=211.90 Aligned_cols=171 Identities=40% Similarity=0.625 Sum_probs=158.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..+|++++|..++||||||+++....|...+.+|.+.++....+.+.+..+.+++|||.||++|+.+...|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|||+++..+|+...+|+..+...- +..+..+++|+||.||.+. +++..++.+..++..+ ..|+++||+.|.|++
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~---gs~~viI~LVGnKtDL~dk--rqvs~eEg~~kAkel~-a~f~etsak~g~NVk 174 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRER---GSDDVIIFLVGNKTDLSDK--RQVSIEEGERKAKELN-AEFIETSAKAGENVK 174 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhcc---CCCceEEEEEcccccccch--hhhhHHHHHHHHHHhC-cEEEEecccCCCCHH
Confidence 999999999999999999987543 3335678899999999987 8999999999999998 799999999999999
Q ss_pred HHHHHHHHHHhhcCCCC
Q 028654 167 AAFECIAKNALKNEPQE 183 (206)
Q Consensus 167 ~l~~~i~~~~~~~~~~~ 183 (206)
.+|..|..++++....+
T Consensus 175 ~lFrrIaa~l~~~~~~~ 191 (221)
T KOG0094|consen 175 QLFRRIAAALPGMEVLE 191 (221)
T ss_pred HHHHHHHHhccCccccc
Confidence 99999999888875543
No 5
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5e-38 Score=222.87 Aligned_cols=195 Identities=36% Similarity=0.670 Sum_probs=164.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC-CeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+|||||++.+...+..+++.+|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888888888888877777777 7889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (206)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (206)
||++++++++.+..|+..+..........+.|+++|+||+|+... +....+++..++...+...++++||++|.|+++
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e 158 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKR--LAKDGEQMDQFCKENGFIGWFETSAKEGINIEE 158 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccc--cccCHHHHHHHHHHcCCceEEEEeCCCCCCHHH
Confidence 999999999999999988876543333347899999999999753 556778888888887757899999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCC-----CccccCCCCCccCCCCCCC
Q 028654 168 AFECIAKNALKNEPQEEDYL-----PDTIDVGGGQQQRSSGCEC 206 (206)
Q Consensus 168 l~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~c~c 206 (206)
+|++|++.+.+..+..++.. +.........+++++|| |
T Consensus 159 ~f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 201 (201)
T cd04107 159 AMRFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGC-C 201 (201)
T ss_pred HHHHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCC-C
Confidence 99999999988766544433 33344445557777799 7
No 6
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-36 Score=205.95 Aligned_cols=171 Identities=41% Similarity=0.727 Sum_probs=162.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
-++.++|+++|.++||||+|+.+|....+...+..+.+.++..+.+..++..+.+++|||.|+++++.+...|++.|+++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|||+++..+|+++..|+..+..+... ++|.++|+||+|+... +++..+..+.++.+++ ..|+++||++|.|
T Consensus 89 ~LvyDitne~Sfeni~~W~~~I~e~a~~----~v~~~LvGNK~D~~~~--R~V~~e~ge~lA~e~G-~~F~EtSAk~~~N 161 (207)
T KOG0078|consen 89 LLVYDITNEKSFENIRNWIKNIDEHASD----DVVKILVGNKCDLEEK--RQVSKERGEALAREYG-IKFFETSAKTNFN 161 (207)
T ss_pred EEEEEccchHHHHHHHHHHHHHHhhCCC----CCcEEEeecccccccc--ccccHHHHHHHHHHhC-CeEEEccccCCCC
Confidence 9999999999999999999999887764 8899999999999875 8999999999999997 9999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 028654 165 VEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~~~ 182 (206)
|++.|..+++.+..+.+.
T Consensus 162 I~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 162 IEEAFLSLARDILQKLED 179 (207)
T ss_pred HHHHHHHHHHHHHhhcch
Confidence 999999999999976655
No 7
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=3.4e-36 Score=210.30 Aligned_cols=169 Identities=31% Similarity=0.566 Sum_probs=151.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...+||+++|..|+|||||+.+|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35689999999999999999999998887777778888887788888888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|||++++.+++.+..|+.++.... ++.|++||+||+|+... +.+..++++.+++..+ .+++++||++|.|+
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~-----~~~piilVGNK~DL~~~--~~v~~~~~~~~a~~~~-~~~~e~SAk~g~~V 155 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA-----PGVPKILVGNRLHLAFK--RQVATEQAQAYAERNG-MTFFEVSPLCNFNI 155 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccchhc--cCCCHHHHHHHHHHcC-CEEEEecCCCCCCH
Confidence 9999999999999999999997654 27899999999999764 5677888999998876 89999999999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 028654 166 EAAFECIAKNALKNEPQ 182 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~~~ 182 (206)
+++|++|++.+..+...
T Consensus 156 ~~~F~~l~~~i~~~~~~ 172 (189)
T cd04121 156 TESFTELARIVLMRHGR 172 (189)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999988876664
No 8
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.4e-36 Score=194.87 Aligned_cols=171 Identities=34% Similarity=0.610 Sum_probs=159.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...+||++||.+|+|||+|+-+|....|.+....+.+.++..+.+.+++..+++.||||.|+++|+.+...|++.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 45799999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|||++.+++|..+..|+.++..+..+. ++..++|+||+|.... +.++.++...|++..+ ..|+++||++.+++
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~---diikmlVgNKiDkes~--R~V~reEG~kfAr~h~-~LFiE~SAkt~~~V 162 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNP---DIIKMLVGNKIDKESE--RVVDREEGLKFARKHR-CLFIECSAKTRENV 162 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCc---cHhHhhhcccccchhc--ccccHHHHHHHHHhhC-cEEEEcchhhhccH
Confidence 9999999999999999999998876653 6667899999997654 8899999999999988 88999999999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 028654 166 EAAFECIAKNALKNEPQ 182 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~~~ 182 (206)
+..|+.++.++++.+.-
T Consensus 163 ~~~FeelveKIi~tp~l 179 (209)
T KOG0080|consen 163 QCCFEELVEKIIETPSL 179 (209)
T ss_pred HHHHHHHHHHHhcCcch
Confidence 99999999999987654
No 9
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.6e-35 Score=208.46 Aligned_cols=190 Identities=41% Similarity=0.664 Sum_probs=156.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
+||+++|++|+|||||++++....+.. .+.++.+.++....+.+++..+.+.+|||||++.+......+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 489999999999999999999988753 5666776677666778888889999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (206)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (206)
+|++++++++.+..|+..+...... +.|+++|+||+|+... +....++...++...+ .+++++||++|.|+++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~NK~Dl~~~--~~~~~~~~~~l~~~~~-~~~~e~Sa~~~~~v~~ 153 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQE----DVVIMLLGNKADMSGE--RVVKREDGERLAKEYG-VPFMETSAKTGLNVEL 153 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEEcccchhc--cccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHH
Confidence 9999999999999999888765432 6799999999999753 4455667777777766 7999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCccccCCCCCccCCCCCCC
Q 028654 168 AFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC 206 (206)
Q Consensus 168 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c 206 (206)
+|.+|.+.+.+.....+.........-..+.++.++| |
T Consensus 154 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 191 (191)
T cd04112 154 AFTAVAKELKHRKYEQPDEGKFKISDYVTKQKKISRC-C 191 (191)
T ss_pred HHHHHHHHHHHhccccCCCCcEEeccccCcccccCCC-C
Confidence 9999999999887654443332333334567788899 7
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.3e-35 Score=209.22 Aligned_cols=165 Identities=38% Similarity=0.685 Sum_probs=147.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
++|+++|..|+|||||++++..+.|...+.++.+.++....+.+++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47899999999999999999999998888889888888888889998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|++++++++.+..|+..+.... ..+.|+++|+||+|+... +.+..++.+.++....+..++++||++|.|++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~----~~~~piilVgNK~DL~~~--~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~ 154 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYA----SEDAELLLVGNKLDCETD--REISRQQGEKFAQQITGMRFCEASAKDNFNVDEI 154 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEECcccccc--cccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence 9999999999999998776543 237899999999999754 6677788888887764488999999999999999
Q ss_pred HHHHHHHHhhc
Q 028654 169 FECIAKNALKN 179 (206)
Q Consensus 169 ~~~i~~~~~~~ 179 (206)
|.++++.+.+.
T Consensus 155 F~~l~~~~~~~ 165 (202)
T cd04120 155 FLKLVDDILKK 165 (202)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 11
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2.9e-35 Score=206.98 Aligned_cols=188 Identities=27% Similarity=0.436 Sum_probs=154.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 89 (206)
+|+++|.+|+|||||+++|..+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999998888777777776544 3455677888899999999999999989999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHH
Q 028654 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169 (206)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~ 169 (206)
+++.++++.+..|+..+...... ...+.|+++|+||+|+... +....++...++...+ .+++++||++|.|++++|
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilvgNK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDE-SAADVPIMIVGNKCDKVYE--REVSTEEGAALARRLG-CEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcc-cCCCCCEEEEEEChhcccc--CccCHHHHHHHHHHhC-CEEEEecCCCCCCHHHHH
Confidence 99999999999999888765432 1237899999999999754 4556666777777766 789999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCccccCCCCCccCCCCCCC
Q 028654 170 ECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC 206 (206)
Q Consensus 170 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c 206 (206)
+++++.+.++...+.+ +......++.++++|||
T Consensus 156 ~~l~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 156 YTLVRALRQQRQGGQG----PKGGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHHHHHhhcccCC----CcCCCCCcccccccCce
Confidence 9999999887777543 24455566777778844
No 12
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.7e-34 Score=203.70 Aligned_cols=190 Identities=32% Similarity=0.587 Sum_probs=155.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
+||+++|.+|+|||||+++|.++.+.. .+.++.+..+....+.+.+..+.+.+||++|++.+......++..+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988764 5777777777777788888889999999999999888888889999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC--cceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN--SRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
||++++.+++.+..|+..+.... ++.|+++|+||+|+.... ......+++..++...+ .+++++||+++.|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv 154 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-----EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-AQHFETSSKTGQNV 154 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-----CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence 99999999999888988876532 267999999999986432 23445566777777665 78999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCccccCCCCCccCCCCCCC
Q 028654 166 EAAFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC 206 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c 206 (206)
+++|++|.+.+.+....+.... ..+.+..+++++.++| |
T Consensus 155 ~~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~ 193 (193)
T cd04118 155 DELFQKVAEDFVSRANNQMNTE-KGVDLGQKKNSYFYSC-C 193 (193)
T ss_pred HHHHHHHHHHHHHhcccccCCC-CccccCCcCCCCCCCC-C
Confidence 9999999999987655432222 4555666677788889 7
No 13
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.7e-34 Score=204.38 Aligned_cols=192 Identities=38% Similarity=0.650 Sum_probs=157.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 35789999999999999999999999888778888887887788888888889999999999999988999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++++++++.+..|+..+..... ..|+++|+||+|+... .....++...++...+ .+++++|++++.|+
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~~-----~~piivVgNK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~gi 155 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNCD-----DVCKVLVGNKNDDPER--KVVETEDAYKFAGQMG-ISLFETSAKENINV 155 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEECCCCcCH
Confidence 99999999999999999998866542 6799999999999754 4456677777777766 88999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCC-CCc---cccCCCCCccCCCCCCC
Q 028654 166 EAAFECIAKNALKNEPQEEDY-LPD---TIDVGGGQQQRSSGCEC 206 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~c~c 206 (206)
+++|++|.+.+++........ ... .....++...+++-| |
T Consensus 156 ~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 199 (199)
T cd04110 156 EEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRC-C 199 (199)
T ss_pred HHHHHHHHHHHHHhhhccCcccccCCccccCccchhccccccC-C
Confidence 999999999998765542211 111 222233334667778 6
No 14
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.5e-34 Score=206.96 Aligned_cols=167 Identities=35% Similarity=0.539 Sum_probs=146.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCC-eEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+.+ ..+.+.+|||+|++.+......+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999998888889988888777777754 578999999999999888899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (206)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (206)
||++++++++.+..|...+....... ..+.|+++|+||+|+... +.+..++...++...+ .+++++||++|+|+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~-~~~~piilVgNK~DL~~~--~~v~~~~~~~~~~~~~-~~~~~iSAktg~gv~~ 156 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSS-ETQPLVVLVGNKTDLEHN--RTVKDDKHARFAQANG-MESCLVSAKTGDRVNL 156 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcccc-CCCceEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence 99999999999999999988765432 235689999999999754 5677778888888776 7899999999999999
Q ss_pred HHHHHHHHHhhc
Q 028654 168 AFECIAKNALKN 179 (206)
Q Consensus 168 l~~~i~~~~~~~ 179 (206)
+|++|++.+...
T Consensus 157 lf~~l~~~l~~~ 168 (215)
T cd04109 157 LFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 15
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=2.6e-34 Score=205.59 Aligned_cols=166 Identities=39% Similarity=0.699 Sum_probs=146.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||++|++.+......+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 35789999999999999999999999888777888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+... +....++...++...+ .+++++||+++.|+
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~----~~~piiiv~nK~Dl~~~--~~~~~~~~~~l~~~~~-~~~~e~SA~~g~~v 162 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKSDLNHL--RSVAEEDGQALAEKEG-LSFLETSALEATNV 162 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhCC----CCCeEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999999999988876543 27899999999999754 5566677777777665 89999999999999
Q ss_pred HHHHHHHHHHHhh
Q 028654 166 EAAFECIAKNALK 178 (206)
Q Consensus 166 ~~l~~~i~~~~~~ 178 (206)
+++|++|++.+.+
T Consensus 163 ~~lf~~l~~~i~~ 175 (216)
T PLN03110 163 EKAFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998866
No 16
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-35 Score=195.74 Aligned_cols=171 Identities=37% Similarity=0.661 Sum_probs=159.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
..+.+|++++|..|+|||+|+.+|+.++|.+.+..|.+.++....+.++++.+++++|||.|++.+++....|++.+-++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
|+|||++.+++|..+..|+..+..+... |..+++++||+|+... +.++.|+.+.|+++.+ ..+.++||+++.|
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~----NmvImLiGNKsDL~~r--R~Vs~EEGeaFA~ehg-LifmETSakt~~~ 155 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNE----NMVIMLIGNKSDLEAR--REVSKEEGEAFAREHG-LIFMETSAKTAEN 155 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCC----CcEEEEEcchhhhhcc--ccccHHHHHHHHHHcC-ceeehhhhhhhhh
Confidence 9999999999999999999999877533 7789999999999877 7899999999999977 8888999999999
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 028654 165 VEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~~~ 182 (206)
+++.|..+...+++.-+.
T Consensus 156 VEEaF~nta~~Iy~~~q~ 173 (216)
T KOG0098|consen 156 VEEAFINTAKEIYRKIQD 173 (216)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999988776544
No 17
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.4e-34 Score=204.13 Aligned_cols=180 Identities=33% Similarity=0.610 Sum_probs=151.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEe-CCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
.+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+ .+..+.+.+|||||++.+......+++.+|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999888777788877777777766 4667899999999999999888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|||++++++++.+..|+..+...... ...|+++|+||+|+... ..+..++...+++..+ .+++++||+++.|++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~---~~~~iilvgNK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~~v~ 155 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQP---HRPVFILVGHKCDLESQ--RQVTREEAEKLAKDLG-MKYIETSARTGDNVE 155 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEEccccccc--cccCHHHHHHHHHHhC-CEEEEEeCCCCCCHH
Confidence 99999999999999999988765432 25678999999999764 5667778888888877 899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCC-CCCCccccC
Q 028654 167 AAFECIAKNALKNEPQEE-DYLPDTIDV 193 (206)
Q Consensus 167 ~l~~~i~~~~~~~~~~~~-~~~~~~~~~ 193 (206)
++|++|++.+.+....++ ..+-.++.+
T Consensus 156 e~f~~l~~~~~~~~~~~~~~~~~~~~~~ 183 (211)
T cd04111 156 EAFELLTQEIYERIKRGELCALDGWDGV 183 (211)
T ss_pred HHHHHHHHHHHHHhhcCCCCcccccccc
Confidence 999999998887755443 333334333
No 18
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1.4e-34 Score=206.09 Aligned_cols=187 Identities=36% Similarity=0.614 Sum_probs=147.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|.+|+|||||+++|..+.+.. ..++.+..+..... ..+.+.+|||+|++.+......+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998764 45666555543332 4578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC-----------------CcceecHHHHHHHHHHcCC
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG-----------------NSRVVSEKKAKAWCASKGN 151 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-----------------~~~~~~~~~~~~~~~~~~~ 151 (206)
|++++++++.+..|+..+.... ..+.|+++|+||+|+... ..+.+..++...++.+.+.
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~----~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~ 151 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTA----NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINK 151 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCc
Confidence 9999999999988888776542 236899999999999751 1367788899999887652
Q ss_pred -------------CcEEEeeccCCCCHHHHHHHHHHHHhhcCCC---CCCCCCccccCCCCCccCCCCCCC
Q 028654 152 -------------IPYFETSAKEGFNVEAAFECIAKNALKNEPQ---EEDYLPDTIDVGGGQQQRSSGCEC 206 (206)
Q Consensus 152 -------------~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~c~c 206 (206)
.+|+++||++|.|++++|..+++.+++...+ +.+.+...|+.+. .+.+|++| |
T Consensus 152 ~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~ 220 (220)
T cd04126 152 YKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPN-PKRSKSKC-C 220 (220)
T ss_pred cccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCC-cccCCCCC-C
Confidence 5799999999999999999999877654433 2222333444433 36678899 7
No 19
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2.4e-34 Score=198.96 Aligned_cols=164 Identities=32% Similarity=0.562 Sum_probs=142.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|.+|+|||+|+.++..+.|...+.++.+..+ ...+.+++..+.+.+|||+|++++......+++.+|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888888887655 455677888999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC--------cceecHHHHHHHHHHcCCCcEEEeec
Q 028654 89 DVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN--------SRVVSEKKAKAWCASKGNIPYFETSA 159 (206)
Q Consensus 89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (206)
|++++++++.+ ..|+..+.... .+.|+++|+||+|+.+.. .+.+..++...++...+..+|+++||
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 155 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-----PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSS 155 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCC
Confidence 99999999998 68999886653 268999999999996532 13477888899998887447999999
Q ss_pred cCCCCHHHHHHHHHHHHhh
Q 028654 160 KEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 160 ~~~~~i~~l~~~i~~~~~~ 178 (206)
++|.|++++|+.+++.+.+
T Consensus 156 k~~~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 156 KTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred CcccCHHHHHHHHHHHHhc
Confidence 9999999999999997643
No 20
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-35 Score=197.08 Aligned_cols=169 Identities=37% Similarity=0.674 Sum_probs=158.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
-++.+||+++|.+++|||-|+.+|....|.....+|.+.++....+.++++.++.+||||.|+++|+.....+++.+.++
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA 90 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 90 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|||++...+|+.+.+|+.++..+... ++++++|+||+||.+. +.+..++.+.++...+ ..|+++||.+..+
T Consensus 91 llVYDITr~~Tfenv~rWL~ELRdhad~----nivimLvGNK~DL~~l--raV~te~~k~~Ae~~~-l~f~EtSAl~~tN 163 (222)
T KOG0087|consen 91 LLVYDITRRQTFENVERWLKELRDHADS----NIVIMLVGNKSDLNHL--RAVPTEDGKAFAEKEG-LFFLETSALDATN 163 (222)
T ss_pred EEEEechhHHHHHHHHHHHHHHHhcCCC----CeEEEEeecchhhhhc--cccchhhhHhHHHhcC-ceEEEeccccccc
Confidence 9999999999999999999999887654 8999999999999875 8899999999999887 9999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 028654 165 VEAAFECIAKNALKNE 180 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~ 180 (206)
++++|..++..+++..
T Consensus 164 Ve~aF~~~l~~I~~~v 179 (222)
T KOG0087|consen 164 VEKAFERVLTEIYKIV 179 (222)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988776543
No 21
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2.4e-34 Score=200.08 Aligned_cols=167 Identities=22% Similarity=0.453 Sum_probs=146.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+..+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+......+++.+|+++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4578999999999999999999999999888888887655 456778888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC----------CcceecHHHHHHHHHHcCCCcE
Q 028654 86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPY 154 (206)
Q Consensus 86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
+|||++++.+++.+ ..|...+..... +.|+++|+||+|+... ..+.+..++++++++..+..+|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~-----~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 156 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATY 156 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEE
Confidence 99999999999997 789988876542 6799999999998642 1246888999999999885689
Q ss_pred EEeeccCCCC-HHHHHHHHHHHHhh
Q 028654 155 FETSAKEGFN-VEAAFECIAKNALK 178 (206)
Q Consensus 155 ~~~s~~~~~~-i~~l~~~i~~~~~~ 178 (206)
+++||+++.| ++++|..+++.++.
T Consensus 157 ~E~SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 157 IECSALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred EECCcCCCCCCHHHHHHHHHHHHhc
Confidence 9999999998 99999999997653
No 22
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=5.6e-34 Score=196.47 Aligned_cols=164 Identities=37% Similarity=0.663 Sum_probs=144.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+|||||++.+......+++.+|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999988887777877777777778888889999999999999998889999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (206)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (206)
||++++++++.+..|+..+..... ++.|+++|+||+|+... +....++...++...+ .+++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~e 154 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTN----PNTVIFLIGNKADLEAQ--RDVTYEEAKQFADENG-LLFLECSAKTGENVED 154 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cCcCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence 999999999999999988765432 26799999999999765 5566778888887765 7999999999999999
Q ss_pred HHHHHHHHHhh
Q 028654 168 AFECIAKNALK 178 (206)
Q Consensus 168 l~~~i~~~~~~ 178 (206)
+|.++++.+.+
T Consensus 155 ~f~~l~~~~~~ 165 (166)
T cd04122 155 AFLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHHhh
Confidence 99999988764
No 23
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=4.2e-34 Score=200.88 Aligned_cols=169 Identities=31% Similarity=0.556 Sum_probs=144.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+..+||+++|.+|+|||||++++....+...+.++.+..+ ...+.+++..+.+.+|||||++++...+..+++.+|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 4469999999999999999999999888777777776555 566677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++++++++.+..|...+..... ..+.|+++|+||+|+.+. ..+..++...++...+ .+++++||+++.|+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~Dl~~~--~~i~~~~~~~~~~~~~-~~~~e~Sak~~~gi 155 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKD---KDRVPMILVGNKCDLDSE--RQVSTGEGQELAKSFG-IPFLETSAKQRVNV 155 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc--cccCHHHHHHHHHHhC-CEEEEeeCCCCCCH
Confidence 99999999999999999988876533 237899999999998654 4455666777776665 78999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 028654 166 EAAFECIAKNALKNEP 181 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~~ 181 (206)
+++|.+|++.+.+..+
T Consensus 156 ~~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 156 DEAFYELVREIRKYLK 171 (189)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999887644
No 24
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.6e-35 Score=188.26 Aligned_cols=166 Identities=45% Similarity=0.766 Sum_probs=155.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..++.+++|.+|+|||+|+-+|....|..+|..+++.++..+.+.+.+..+.++|||+.|++.|+.+...+++..+++|+
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|||+++.++|.+..+|++++...+. ..|-++|+||.|.++- +.+..++...|+...+ +.+|++|++++.+++
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~ncd-----sv~~vLVGNK~d~~~R--rvV~t~dAr~~A~~mg-ie~FETSaKe~~NvE 158 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNCD-----SVPKVLVGNKNDDPER--RVVDTEDARAFALQMG-IELFETSAKENENVE 158 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcCc-----cccceecccCCCCccc--eeeehHHHHHHHHhcC-chheehhhhhcccch
Confidence 9999999999999999999988765 7789999999999876 7889999999999998 999999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 028654 167 AAFECIAKNALKNE 180 (206)
Q Consensus 167 ~l~~~i~~~~~~~~ 180 (206)
..|.-|.+.++...
T Consensus 159 ~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 159 AMFHCITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998776654
No 25
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.1e-33 Score=198.73 Aligned_cols=167 Identities=46% Similarity=0.748 Sum_probs=145.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999887777888888787777888888899999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|+++++++..+..|+..+...... +.|+++|+||+|+.+. .....++...++...+ .+++++||+++.|++++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~----~~~~ivv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~evSa~~~~~i~~~ 153 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARE----NVIKVIVANKSDLVNN--KVVDSNIAKSFCDSLN-IPFFETSAKQSINVEEA 153 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECCCCccc--ccCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence 999999999999999988765432 5789999999998754 4556677777777665 68999999999999999
Q ss_pred HHHHHHHHhhcCCC
Q 028654 169 FECIAKNALKNEPQ 182 (206)
Q Consensus 169 ~~~i~~~~~~~~~~ 182 (206)
|.++++.+.++...
T Consensus 154 f~~l~~~~~~~~~~ 167 (188)
T cd04125 154 FILLVKLIIKRLEE 167 (188)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999876543
No 26
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=7.6e-34 Score=199.72 Aligned_cols=165 Identities=24% Similarity=0.507 Sum_probs=141.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
.+||+++|..|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999998888888886554 44566788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc----------ceecHHHHHHHHHHcCCCcEEE
Q 028654 88 YDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPYFE 156 (206)
Q Consensus 88 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
||++++.+++.+. .|...+.... ++.|+++|+||.|+.+... ..+..++.+.++...+..++++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e 156 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-----PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLE 156 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999999996 5877675432 2789999999999965421 2356677888888877578999
Q ss_pred eeccCCCCHHHHHHHHHHHHhh
Q 028654 157 TSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 157 ~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
+||++|.|++++|.++++.+..
T Consensus 157 ~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 157 CSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred eCCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999998865
No 27
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=8e-34 Score=195.89 Aligned_cols=165 Identities=42% Similarity=0.739 Sum_probs=145.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..+||+++|++|+|||||++++.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+......+++.+|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999999988888888888877788888888999999999999988888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+. +....++...++...+ .+++++||+++.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 154 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHAS----EDVERMLVGNKCDMEEK--RVVSKEEGEALADEYG-IKFLETSAKANINVE 154 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence 9999999999999999998876532 37899999999999864 4556677777777766 789999999999999
Q ss_pred HHHHHHHHHHhh
Q 028654 167 AAFECIAKNALK 178 (206)
Q Consensus 167 ~l~~~i~~~~~~ 178 (206)
++|+++.+.+..
T Consensus 155 ~~~~~i~~~~~~ 166 (167)
T cd01867 155 EAFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 28
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=9.7e-34 Score=196.69 Aligned_cols=163 Identities=23% Similarity=0.448 Sum_probs=142.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+......+++.+|++|+||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 6899999999999999999999998888888886655 456778888999999999999999998999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC----------CcceecHHHHHHHHHHcCCCcEEEe
Q 028654 89 DVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
|++++++++.+ ..|...+..... +.|+++|+||+|+.+. ..+.+..++.+++++..+..+|+++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~-----~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~ 155 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCP-----NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLEC 155 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCC-----CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEEC
Confidence 99999999996 789988876542 6799999999999642 1245788899999999885589999
Q ss_pred eccCCCC-HHHHHHHHHHHHh
Q 028654 158 SAKEGFN-VEAAFECIAKNAL 177 (206)
Q Consensus 158 s~~~~~~-i~~l~~~i~~~~~ 177 (206)
||++|++ ++++|..++++++
T Consensus 156 SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 156 SAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred ccCcCCcCHHHHHHHHHHHHh
Confidence 9999995 9999999999765
No 29
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=188.24 Aligned_cols=195 Identities=35% Similarity=0.657 Sum_probs=167.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEe-CCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
.+.+++++||.+-+|||+|++.+..+.+.....||.+.++....++. .+..+++++|||.|++.+++....|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 36799999999999999999999999999999999999888777766 46778999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (206)
++|||+++.++|+.+..|+.+...+.. + |..+ +.+|++|+|+... +++..|+.+.++...+ ..|+++|+++|.
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q--~-P~k~VFlLVGhKsDL~Sq--RqVt~EEaEklAa~hg-M~FVETSak~g~ 159 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQ--G-PDKVVFLLVGHKSDLQSQ--RQVTAEEAEKLAASHG-MAFVETSAKNGC 159 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcC--C-CCeeEEEEeccccchhhh--ccccHHHHHHHHHhcC-ceEEEecccCCC
Confidence 999999999999999999999876654 2 3444 5699999999966 9999999999999998 999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCC-----------CCCCccccCCCCCccCCCCCCC
Q 028654 164 NVEAAFECIAKNALKNEPQEE-----------DYLPDTIDVGGGQQQRSSGCEC 206 (206)
Q Consensus 164 ~i~~l~~~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~c~c 206 (206)
|+++.|..|.+.+...-.+++ ...|..+.-.....+..+.|+|
T Consensus 160 NVeEAF~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~k~c~C 213 (213)
T KOG0091|consen 160 NVEEAFDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPSKPCQC 213 (213)
T ss_pred cHHHHHHHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCCCCCCC
Confidence 999999999987755444311 1345555556666778888878
No 30
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.6e-33 Score=201.68 Aligned_cols=168 Identities=21% Similarity=0.409 Sum_probs=146.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...+||+++|.+|+|||+|+++|..+.|...+.++.+..+. ..+.+++..+.+.||||+|++.+......+++.+|++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 45789999999999999999999999998888888876664 45778889999999999999999998999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC----------CcceecHHHHHHHHHHcCCCcE
Q 028654 86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPY 154 (206)
Q Consensus 86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
+|||+++++++..+ ..|+..+..... +.|+++|+||+|+... ..+.+..++.+.+++..+...|
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~-----~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~ 164 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCP-----STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY 164 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence 99999999999984 789998876542 6799999999998642 1256788899999999884479
Q ss_pred EEeeccCCC-CHHHHHHHHHHHHhhc
Q 028654 155 FETSAKEGF-NVEAAFECIAKNALKN 179 (206)
Q Consensus 155 ~~~s~~~~~-~i~~l~~~i~~~~~~~ 179 (206)
++|||++|. |++++|..++..+++.
T Consensus 165 ~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 165 LECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred EEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 999999997 8999999999988775
No 31
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.4e-33 Score=195.19 Aligned_cols=167 Identities=25% Similarity=0.490 Sum_probs=143.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 37999999999999999999999988877778876544 44567788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (206)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (206)
||++++.++..+..|...+..... ..+.|+++|+||+|+... +.+..++...+++..+ ++++++||++|.|+++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~---~~~~piilvgNK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRL---TEDIPLVLVGNKVDLESQ--RQVTTEEGRNLAREFN-CPFFETSAALRHYIDD 154 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcC---CCCCCEEEEEEChhhhhc--CccCHHHHHHHHHHhC-CEEEEEecCCCCCHHH
Confidence 999999999999888877765432 237899999999998754 5677778888887776 8999999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 028654 168 AFECIAKNALKNEP 181 (206)
Q Consensus 168 l~~~i~~~~~~~~~ 181 (206)
+|+++++.+.+...
T Consensus 155 ~f~~l~~~~~~~~~ 168 (172)
T cd04141 155 AFHGLVREIRRKES 168 (172)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999998887444
No 32
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.2e-33 Score=194.24 Aligned_cols=168 Identities=56% Similarity=1.006 Sum_probs=147.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
++..+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45679999999999999999999999888877777877777777788889999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|||++++++++.+..|...+..........+.|+++|+||+|+.. +....+++.+++...+..+++++||+++.|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE---RQVSTEEAQAWCRENGDYPYFETSAKDATN 158 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc---cccCHHHHHHHHHHCCCCeEEEEECCCCCC
Confidence 99999999999999999999887765544445789999999999863 556778888888887756899999999999
Q ss_pred HHHHHHHHHHH
Q 028654 165 VEAAFECIAKN 175 (206)
Q Consensus 165 i~~l~~~i~~~ 175 (206)
++++|+++++.
T Consensus 159 v~~~~~~~~~~ 169 (170)
T cd04116 159 VAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 33
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-34 Score=185.81 Aligned_cols=175 Identities=38% Similarity=0.630 Sum_probs=161.7
Q ss_pred CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec
Q 028654 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 80 (206)
|+..-++.+|++++|+.|+|||.|+++|....+.+...++.+.++..+.+.+.++.++++||||.|++.|++..+.|++.
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 45556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (206)
+-+.++|||+++++++..+..|+.....++.. ++-+++++||.|+.+. +++...+...|+++.. ..+.++|++
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~----nIvviL~GnKkDL~~~--R~VtflEAs~FaqEne-l~flETSa~ 154 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASP----NIVVILCGNKKDLDPE--REVTFLEASRFAQENE-LMFLETSAL 154 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCC----cEEEEEeCChhhcChh--hhhhHHHHHhhhcccc-eeeeeeccc
Confidence 99999999999999999999999998776654 8889999999999877 8999999999999887 789999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCC
Q 028654 161 EGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 161 ~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
+|+++++.|-...+.++.+-+.
T Consensus 155 TGeNVEEaFl~c~~tIl~kIE~ 176 (214)
T KOG0086|consen 155 TGENVEEAFLKCARTILNKIES 176 (214)
T ss_pred ccccHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988776554
No 34
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=3.8e-33 Score=194.49 Aligned_cols=168 Identities=24% Similarity=0.451 Sum_probs=142.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|..|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999988888899888888788888888999999999999999998999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC---cceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN---SRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
|+++++++..+..|+..+..... ...| ++|+||+|+.... ......++...++...+ .+++++||++|.|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~----~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SAk~g~~v 154 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK----TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCSTSHSINV 154 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC----CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999999998876532 1456 6789999996321 11123456667777776 88999999999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 028654 166 EAAFECIAKNALKNEPQ 182 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~~~ 182 (206)
+++|+++++.+.+-+..
T Consensus 155 ~~lf~~l~~~l~~~~~~ 171 (182)
T cd04128 155 QKIFKIVLAKAFDLPLT 171 (182)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999875554
No 35
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=3.1e-33 Score=195.24 Aligned_cols=167 Identities=46% Similarity=0.724 Sum_probs=143.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC----------CeEEEEEEeeCCCcccccccccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVA 76 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~ 76 (206)
+.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56899999999999999999999999888888888877766666554 45688999999999999999999
Q ss_pred ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654 77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
+++.+|++++|||+++++++..+..|+..+..... .++.|+++|+||+|+.+. +....++...++...+ .++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e 156 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY---CENPDIVLCGNKADLEDQ--RQVSEEQAKALADKYG-IPYFE 156 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCcEEEEEeCccchhc--CccCHHHHHHHHHHcC-CeEEE
Confidence 99999999999999999999999999998876532 236789999999999764 4566677888888876 78999
Q ss_pred eeccCCCCHHHHHHHHHHHHhhc
Q 028654 157 TSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 157 ~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
+||+++.|++++|++|.+.+.++
T Consensus 157 ~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 157 TSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999987653
No 36
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=6.2e-33 Score=197.73 Aligned_cols=167 Identities=20% Similarity=0.435 Sum_probs=142.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+|+|.+|+|||+|+++|..+.+...+.|+.+..+. ..+.+++..+.+.||||+|++.+......+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 68999999999999999999999998888898876654 56778889999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcEEEe
Q 028654 89 DVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
|++++++++.+ ..|...+.... ++.|+++|+||+|+.... ...+..++...+++..+..+|+++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-----~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~ 155 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-----PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVEC 155 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEc
Confidence 99999999998 45665554432 278999999999996531 123677888999999886799999
Q ss_pred eccCCC-CHHHHHHHHHHHHhhcCC
Q 028654 158 SAKEGF-NVEAAFECIAKNALKNEP 181 (206)
Q Consensus 158 s~~~~~-~i~~l~~~i~~~~~~~~~ 181 (206)
||+++. |++++|+.+..+++....
T Consensus 156 SAk~~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 156 SSRSSERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CCCcCCcCHHHHHHHHHHHHHhccC
Confidence 999988 499999999998877544
No 37
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.7e-33 Score=194.30 Aligned_cols=162 Identities=25% Similarity=0.471 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|.+|+|||||++++..+.+...+.|+.+..+. ..+.+.+..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 68999999999999999999999988888888866553 45667888899999999999999888888999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcEEEe
Q 028654 89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
|++++++++.+. .|...+.... ++.|+++|+||+|+.... .+.+..++.+.+++..+...++++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~ 155 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVEC 155 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEe
Confidence 999999999986 5887776543 268999999999986531 245677788888887776789999
Q ss_pred eccCCCCHHHHHHHHHHHH
Q 028654 158 SAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~ 176 (206)
||++|.|++++|+.+++++
T Consensus 156 SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 156 SALTQKGLKNVFDEAILAA 174 (175)
T ss_pred cCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999865
No 38
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=5.3e-33 Score=191.40 Aligned_cols=163 Identities=37% Similarity=0.687 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|++|+|||||++++.+..+...+.++.+.++....+...+..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988777888777776666667777889999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|.+++++++.+..|+..+..... .+.|+++|+||+|+.+. +....++...++...+ .+++++||+++.|++++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l 154 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSW----DNAQVILVGNKCDMEDE--RVVSSERGRQLADQLG-FEFFEASAKENINVKQV 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCCEEEEEECcccCcc--cccCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence 99999999999999998865432 26799999999999764 4455667777777665 78999999999999999
Q ss_pred HHHHHHHHhh
Q 028654 169 FECIAKNALK 178 (206)
Q Consensus 169 ~~~i~~~~~~ 178 (206)
|+++++.+.+
T Consensus 155 ~~~l~~~~~~ 164 (165)
T cd01865 155 FERLVDIICD 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 39
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=4.9e-33 Score=191.79 Aligned_cols=164 Identities=41% Similarity=0.753 Sum_probs=144.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+.+.+..+.+.+||+||++.+......+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999988877788888788778888888889999999999999988888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (206)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (206)
+|+++++++..+..|+..+..... ++.|+++|+||+|+... .....++...++...+ .+++++|+++|.|+++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLTDK--RVVDYSEAQEFADELG-IPFLETSAKNATNVEQ 154 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCcCHHH
Confidence 999999999999999998876542 26799999999998764 4566677778877766 7999999999999999
Q ss_pred HHHHHHHHHhh
Q 028654 168 AFECIAKNALK 178 (206)
Q Consensus 168 l~~~i~~~~~~ 178 (206)
+|.+|.+.+.+
T Consensus 155 ~~~~i~~~~~~ 165 (166)
T cd01869 155 AFMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 40
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=3.8e-33 Score=195.90 Aligned_cols=169 Identities=33% Similarity=0.551 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC-CeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
+||+++|++|+|||||+++|.++.+...+.++.+..+.. .+... +..+.+.+|||||++.+......+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 489999999999999999999998887777777665543 34454 6778999999999999988888899999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC--cceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 88 YDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN--SRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 88 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
||++++++++.+. .|+..+.... ++.|+++|+||.|+.... ...+..++..+++...+..+++++||++|.|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-----PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence 9999999999885 5777665432 278999999999986532 2345677888888887744899999999999
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 028654 165 VEAAFECIAKNALKNEPQE 183 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~~~~ 183 (206)
++++|..+++.+.......
T Consensus 155 v~~~f~~l~~~~~~~~~~~ 173 (187)
T cd04132 155 VEEVFDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 9999999999998876654
No 41
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=6.3e-33 Score=198.63 Aligned_cols=165 Identities=30% Similarity=0.598 Sum_probs=142.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+..+||+++|.+|+|||||++++..+.+...+.++.+.++....+...+..+.+.+|||+|++.+...+..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56799999999999999999999999888888899888887777777777899999999999999998889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|||+++++++..+..|+..+.... ++.|+++|+||+|+.. +.+..+.+ .+....+ .+++++||++|.|+
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-----~~~piilvgNK~Dl~~---~~v~~~~~-~~~~~~~-~~~~e~SAk~~~~i 160 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN---RQVKAKQV-TFHRKKN-LQYYEISAKSNYNF 160 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-----CCCcEEEEEEchhhhh---ccCCHHHH-HHHHhcC-CEEEEcCCCCCCCH
Confidence 9999999999999999999987653 2789999999999864 23334444 5555544 78999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 028654 166 EAAFECIAKNALKNE 180 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~ 180 (206)
+++|.+|++.+.+..
T Consensus 161 ~~~f~~l~~~~~~~~ 175 (219)
T PLN03071 161 EKPFLYLARKLAGDP 175 (219)
T ss_pred HHHHHHHHHHHHcCc
Confidence 999999999997653
No 42
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=5.5e-33 Score=191.81 Aligned_cols=167 Identities=34% Similarity=0.640 Sum_probs=145.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|++|+|||||++++.++.+...+.++.+.++....+.+.+..+.+.+|||||++.+......+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888999999999999988888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCC-CCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASP-SDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (206)
|++++.++..+..|+..+...... ....+.|+++|+||+|+... .....++...++...+ .+++++||+++.|+++
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 157 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH--RAVSEDEGRLWAESKG-FKYFETSACTGEGVNE 157 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccc--cccCHHHHHHHHHHcC-CeEEEEECCCCCCHHH
Confidence 999999999999999998876542 11236899999999999743 4556777777777766 8899999999999999
Q ss_pred HHHHHHHHHhh
Q 028654 168 AFECIAKNALK 178 (206)
Q Consensus 168 l~~~i~~~~~~ 178 (206)
+|++|++.+++
T Consensus 158 l~~~l~~~l~~ 168 (168)
T cd04119 158 MFQTLFSSIVD 168 (168)
T ss_pred HHHHHHHHHhC
Confidence 99999988753
No 43
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=5.3e-33 Score=190.59 Aligned_cols=160 Identities=33% Similarity=0.622 Sum_probs=141.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
++|+++|++|+|||||++++..+.+...+.++.+.++....+.+.+..+.+.+||++|++.+......+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999988888888888887788888888899999999999999988888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|++++++++.+..|+..+..... .+.|+++|+||.|+... +.+..++...+++..+ .+++++||++|.|++++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~----~~~~iilvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAP----EGVQKILIGNKADEEQK--RQVGDEQGNKLAKEYG-MDFFETSACTNSNIKES 153 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence 99999999999999998876532 26899999999999754 5566778888887776 88999999999999999
Q ss_pred HHHHHHH
Q 028654 169 FECIAKN 175 (206)
Q Consensus 169 ~~~i~~~ 175 (206)
|.+|.+.
T Consensus 154 f~~l~~~ 160 (161)
T cd04117 154 FTRLTEL 160 (161)
T ss_pred HHHHHhh
Confidence 9999864
No 44
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=195.87 Aligned_cols=168 Identities=37% Similarity=0.660 Sum_probs=146.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||+|++.+...+..+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988887777888888877788888888899999999999988888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|+|+++++++..+..|+..+..... ++.|+++|+||+|+... +....++.+.+++..+ .+++++|++++.|++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~~----~~~piiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHR--RAVSTEEGEQFAKEHG-LIFMEASAKTAQNVE 157 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccCccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence 9999999999999899887765432 37899999999999764 4567788888888776 789999999999999
Q ss_pred HHHHHHHHHHhhcCC
Q 028654 167 AAFECIAKNALKNEP 181 (206)
Q Consensus 167 ~l~~~i~~~~~~~~~ 181 (206)
++|.++++.++++..
T Consensus 158 e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 158 EAFIKTAAKIYKKIQ 172 (210)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987543
No 45
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6.6e-33 Score=190.97 Aligned_cols=163 Identities=38% Similarity=0.650 Sum_probs=141.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
+.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+.+..+.+.+||+||++.+......+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999988877777787777777778888888899999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|+|++++.+++.+..|+..+..... .+.|+++|+||+|+... +....+....+++..+...++++|+++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 155 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGA----SNVVLLLIGNKCDLEEQ--REVLFEEACTLAEKNGMLAVLETSAKESQNVE 155 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcCCcEEEEEECCCCCCHH
Confidence 9999999999999999998876432 37899999999999765 45666777788887765679999999999999
Q ss_pred HHHHHHHHH
Q 028654 167 AAFECIAKN 175 (206)
Q Consensus 167 ~l~~~i~~~ 175 (206)
++|+++.+.
T Consensus 156 ~~~~~l~~~ 164 (165)
T cd01864 156 EAFLLMATE 164 (165)
T ss_pred HHHHHHHHh
Confidence 999999875
No 46
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=8.8e-33 Score=190.90 Aligned_cols=165 Identities=35% Similarity=0.613 Sum_probs=141.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 89 (206)
||+++|.+|||||||++++.++.+...+.++.+.++....+.+.+..+.+.+|||||++++......+++.+|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 78999999999999999999999988888998888877888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHH
Q 028654 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169 (206)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~ 169 (206)
+++++++..+..|+..+...... .+.|+++|+||+|+..........++...++...+ .+++++||+++.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~---~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDP---SSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ-AEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEEChhcCccccccccHHHHHHHHHHcC-CeEEEEECCCCCCHHHHH
Confidence 99999999999999988654322 24689999999998654323334556666766665 689999999999999999
Q ss_pred HHHHHHHhh
Q 028654 170 ECIAKNALK 178 (206)
Q Consensus 170 ~~i~~~~~~ 178 (206)
+.|++.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999998865
No 47
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-33 Score=180.18 Aligned_cols=169 Identities=36% Similarity=0.674 Sum_probs=155.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
++.+|++++|...+|||+|+.++.+..|...+.++.+.++..+.+--..+.+.+++|||.|++.++.....+++.++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 35679999999999999999999999999999999999999998877778899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|||+++.+++..++.|...+.-+.. .+.|+|+|+||+|+... +.++.|....++...+ ..|+++||+.+.++
T Consensus 99 LmyDitNeeSf~svqdw~tqIktysw----~naqvilvgnKCDmd~e--Rvis~e~g~~l~~~LG-fefFEtSaK~NinV 171 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYSW----DNAQVILVGNKCDMDSE--RVISHERGRQLADQLG-FEFFETSAKENINV 171 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeeec----cCceEEEEecccCCccc--eeeeHHHHHHHHHHhC-hHHhhhcccccccH
Confidence 99999999999999999998866543 48999999999999876 8999999999999999 79999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 028654 166 EAAFECIAKNALKNEP 181 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~~ 181 (206)
+++|+.++..+-+...
T Consensus 172 k~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 172 KQVFERLVDIICDKMS 187 (193)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998766544
No 48
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.1e-32 Score=189.85 Aligned_cols=163 Identities=39% Similarity=0.736 Sum_probs=143.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..++|+++|++|||||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+......+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 35799999999999999999999998887888888888888888888888899999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|+|++++.++..+..|+..+...... +.|+++|+||+|+... +....++...++...+ .+++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~pi~vv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 154 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADS----NIVIMLVGNKSDLRHL--RAVPTEEAKAFAEKNG-LSFIETSALDGTNVE 154 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHH
Confidence 99999999999999999988766432 6799999999999764 5566777777777654 789999999999999
Q ss_pred HHHHHHHHHH
Q 028654 167 AAFECIAKNA 176 (206)
Q Consensus 167 ~l~~~i~~~~ 176 (206)
++|++|.+.+
T Consensus 155 ~l~~~l~~~i 164 (165)
T cd01868 155 EAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 49
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1e-32 Score=189.60 Aligned_cols=161 Identities=36% Similarity=0.632 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|.+|+|||||++++..+.+...+.++.+ ......+.+++..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888777777765 444566778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|++++++++.+..|...+..... ..+.|+++|+||+|+.+. +....++...+....+ .+++++||+++.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKD---TENVPMVLVGNKCDLEDE--RVVSREEGQALARQWG-CPFYETSAKSKINVDEV 154 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc--ceecHHHHHHHHHHcC-CeEEEecCCCCCCHHHH
Confidence 99999999999999888876532 237899999999999754 4566667777777766 89999999999999999
Q ss_pred HHHHHHHH
Q 028654 169 FECIAKNA 176 (206)
Q Consensus 169 ~~~i~~~~ 176 (206)
|++|.+.+
T Consensus 155 ~~~l~~~~ 162 (163)
T cd04136 155 FADLVRQI 162 (163)
T ss_pred HHHHHHhc
Confidence 99998754
No 50
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.5e-32 Score=188.95 Aligned_cols=163 Identities=31% Similarity=0.575 Sum_probs=138.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
++||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+.+..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 47999999999999999999998887776777765544 45667788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (206)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (206)
||.++..+++.+..|+..+..... ..+.|+++|+||+|+.+. .....++...++...+ .+++++||+++.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 153 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKD---TEDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWG-CAFLETSAKAKINVNE 153 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECCcchhc--cEEcHHHHHHHHHHhC-CEEEEeeCCCCCCHHH
Confidence 999999999999999888876532 237899999999999764 4456666777777666 7999999999999999
Q ss_pred HHHHHHHHHh
Q 028654 168 AFECIAKNAL 177 (206)
Q Consensus 168 l~~~i~~~~~ 177 (206)
+|.+|.+.+-
T Consensus 154 ~~~~l~~~l~ 163 (164)
T cd04175 154 IFYDLVRQIN 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998653
No 51
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2e-32 Score=192.27 Aligned_cols=166 Identities=30% Similarity=0.492 Sum_probs=138.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 89 (206)
||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+......++..+|++++|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 799999999999999999999988877777776554 3455667778899999999999998888889999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc----------ceecHHHHHHHHHHcCCCcEEEee
Q 028654 90 VNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPYFETS 158 (206)
Q Consensus 90 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s 158 (206)
++++++++.+. .|+..+.... ++.|+++|+||+|+..... ..+..++...++...+.++++++|
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~-----~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 155 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHC-----PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECS 155 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 99999999885 5888776543 2789999999999975421 124556667777777667899999
Q ss_pred ccCCCCHHHHHHHHHHHHhhcCC
Q 028654 159 AKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 159 ~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
|++|.|++++|.+|++.++...+
T Consensus 156 Ak~~~~v~e~f~~l~~~~~~~~~ 178 (189)
T cd04134 156 AKLNRGVNEAFTEAARVALNVRP 178 (189)
T ss_pred CCcCCCHHHHHHHHHHHHhcccc
Confidence 99999999999999998875443
No 52
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=182.39 Aligned_cols=171 Identities=37% Similarity=0.669 Sum_probs=158.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
+...||++++|..=+|||+|+-+++...|......+....+..+.+.+.+....+.||||.|++.|..+...|++.++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 45689999999999999999999999999988888888888889999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|||++++++|+.+..|..++..+... .+.++||+||+|+... ++++.++.+.++...+ ..++++||+++.|
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGn----ei~l~IVGNKiDLEee--R~Vt~qeAe~YAesvG-A~y~eTSAk~N~G 162 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGN----EIELLIVGNKIDLEEE--RQVTRQEAEAYAESVG-ALYMETSAKDNVG 162 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCC----eeEEEEecCcccHHHh--hhhhHHHHHHHHHhhc-hhheecccccccC
Confidence 9999999999999999999999888764 5678999999999876 8899999999999998 8899999999999
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 028654 165 VEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~~~ 182 (206)
+.++|+.+....++...+
T Consensus 163 i~elFe~Lt~~MiE~~s~ 180 (218)
T KOG0088|consen 163 ISELFESLTAKMIEHSSQ 180 (218)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999988887644
No 53
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=3.5e-32 Score=187.83 Aligned_cols=165 Identities=38% Similarity=0.687 Sum_probs=144.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..+||+++|.+|+|||||++++.+..+...+.++.+.+.....+...+....+.+||+||++++......+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999998877777887788877888888888899999999999988888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|+|++++.++..+..|+..+..... ++.|+++|+||.|+... .....++...++...+ ..++++|++++.|++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~ 155 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSN----SNMTIMLIGNKCDLESR--REVSYEEGEAFAKEHG-LIFMETSAKTASNVE 155 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence 9999999999999999998876532 37899999999999754 4566777777777765 889999999999999
Q ss_pred HHHHHHHHHHhh
Q 028654 167 AAFECIAKNALK 178 (206)
Q Consensus 167 ~l~~~i~~~~~~ 178 (206)
++|.++.+.+.+
T Consensus 156 ~~~~~~~~~~~~ 167 (168)
T cd01866 156 EAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 54
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=5e-32 Score=187.78 Aligned_cols=170 Identities=81% Similarity=1.265 Sum_probs=147.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|++|||||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++|+++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887777777777777777888888899999999999988888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|++++++++.+..|...+..........++|+++|+||+|+..+ .....++...+....+..+++++|+++|.|++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK--RQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA 158 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc--cccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence 99999999888889888777665554557899999999999753 4455667777777776689999999999999999
Q ss_pred HHHHHHHHhhcC
Q 028654 169 FECIAKNALKNE 180 (206)
Q Consensus 169 ~~~i~~~~~~~~ 180 (206)
+++|.+.+.+..
T Consensus 159 ~~~i~~~~~~~~ 170 (172)
T cd01862 159 FETIARKALEQE 170 (172)
T ss_pred HHHHHHHHHhcc
Confidence 999999988763
No 55
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=4.2e-32 Score=186.14 Aligned_cols=161 Identities=33% Similarity=0.615 Sum_probs=136.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|.+|+|||||++++....+...+.++.+.+.......+++..+.+.+|||+|++.+...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777777666666667777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|++++.++..+..|+..+..... +.|+++|+||+|+... . .++...++...+ .+++++||+++.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-----~~p~ivv~nK~Dl~~~----~-~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l 149 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-----EIPCIVVANKIDLDPS----V-TQKKFNFAEKHN-LPLYYVSAADGTNVVKL 149 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEECccCchh----H-HHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence 99999999999999988866432 6799999999998532 1 233444555554 78999999999999999
Q ss_pred HHHHHHHHhhcC
Q 028654 169 FECIAKNALKNE 180 (206)
Q Consensus 169 ~~~i~~~~~~~~ 180 (206)
|+.+++.+++++
T Consensus 150 ~~~l~~~~~~~~ 161 (161)
T cd04124 150 FQDAIKLAVSYK 161 (161)
T ss_pred HHHHHHHHHhcC
Confidence 999999888753
No 56
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=3.1e-32 Score=188.81 Aligned_cols=161 Identities=25% Similarity=0.475 Sum_probs=137.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|.+|+|||||+.++..+.+...+.++.+. .....+.+++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 68999999999999999999999888888887753 33455667888899999999999999988899999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcEEEe
Q 028654 89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
|+++++++..+. .|+..+.... ++.|+++|+||+|+.+.. ...+..++...++...+..+++++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 155 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 155 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999985 6877775542 278999999999996431 134677888889888876699999
Q ss_pred eccCCCCHHHHHHHHHHH
Q 028654 158 SAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~ 175 (206)
||++|.|++++|+.+++.
T Consensus 156 Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 156 SALTQKGLKTVFDEAIRA 173 (174)
T ss_pred cccccCCHHHHHHHHHHh
Confidence 999999999999999864
No 57
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-33 Score=179.49 Aligned_cols=166 Identities=37% Similarity=0.633 Sum_probs=152.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..+||+++|..|+|||.|+++|..+-|++....+.+.++..+.+.+++..+++++|||.|+++|++....|++.++++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
+||++...+|+.+..|+.++..++.. ++--|+|+||+|+.+. +.+.....++|..... ..|.++||++-++++
T Consensus 86 vydiscqpsfdclpewlreie~yan~----kvlkilvgnk~d~~dr--revp~qigeefs~~qd-myfletsakea~nve 158 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYANN----KVLKILVGNKIDLADR--REVPQQIGEEFSEAQD-MYFLETSAKEADNVE 158 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhhc----ceEEEeeccccchhhh--hhhhHHHHHHHHHhhh-hhhhhhcccchhhHH
Confidence 99999999999999999999998764 5556899999999765 6777888888887754 778999999999999
Q ss_pred HHHHHHHHHHhhc
Q 028654 167 AAFECIAKNALKN 179 (206)
Q Consensus 167 ~l~~~i~~~~~~~ 179 (206)
.||..+.-.+...
T Consensus 159 ~lf~~~a~rli~~ 171 (213)
T KOG0095|consen 159 KLFLDLACRLISE 171 (213)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988776543
No 58
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=3.9e-32 Score=191.55 Aligned_cols=173 Identities=24% Similarity=0.398 Sum_probs=139.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc--------cccceec
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAFYRG 80 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~ 80 (206)
+||+++|.+|+|||||++++.++.+...+.++.+.+.+...+.+++..+.+.+|||||...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999988778888876666666777888899999999996543221 2234688
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (206)
+|++++|||++++++++.+..|...+...... ...++|+++|+||+|+... +....+++..++....+++|+++||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~-~~~~~piiivgNK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPA-GNKEPPIVVVGNKRDQQRH--RFAPRHVLSVLVRKSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhccc-CCCCCCEEEEEECcccccc--ccccHHHHHHHHHHhcCCcEEEecCC
Confidence 99999999999999999999998888765421 1237899999999999754 44566666666554445899999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCC
Q 028654 161 EGFNVEAAFECIAKNALKNEPQEE 184 (206)
Q Consensus 161 ~~~~i~~l~~~i~~~~~~~~~~~~ 184 (206)
+|.|++++|+.+++.+..+.+...
T Consensus 158 ~g~~v~~lf~~i~~~~~~~~~~~~ 181 (198)
T cd04142 158 YNWHILLLFKELLISATTRGRSTH 181 (198)
T ss_pred CCCCHHHHHHHHHHHhhccCCCcc
Confidence 999999999999999987766533
No 59
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=9.4e-32 Score=192.05 Aligned_cols=171 Identities=35% Similarity=0.609 Sum_probs=140.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
....+||+++|.+|+|||||+++|.+..+. .+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 345789999999999999999999988764 5567777777777777888888999999999999998889999999999
Q ss_pred EEEEECCChhhHHHHHH-HHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654 85 VLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (206)
++|+|.++++++..+.. |...+..... ..+.|+++|+||+|+... .....++...++...+ ..++++||+++.
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~---~~~~~~ilv~NK~Dl~~~--~~i~~~~~~~~~~~~~-~~~~e~SAk~~~ 163 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYST---NQDCVKMLVGNKVDRESE--RDVSREEGMALAKEHG-CLFLECSAKTRE 163 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc--CccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 99999999999999865 5444433322 125789999999999764 4455666667776665 789999999999
Q ss_pred CHHHHHHHHHHHHhhcCCC
Q 028654 164 NVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 164 ~i~~l~~~i~~~~~~~~~~ 182 (206)
|++++|++|.+.+.+.+..
T Consensus 164 ~v~~l~~~l~~~~~~~~~~ 182 (211)
T PLN03118 164 NVEQCFEELALKIMEVPSL 182 (211)
T ss_pred CHHHHHHHHHHHHHhhhhh
Confidence 9999999999999876543
No 60
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=5.2e-32 Score=186.45 Aligned_cols=162 Identities=31% Similarity=0.663 Sum_probs=137.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+......++..+|++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988887777888877777777777778899999999999998888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|++++++++.+..|+..+..... +.|+++|+||+|+... .... ....+.... ..+++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-----~~piiiv~nK~Dl~~~---~~~~-~~~~~~~~~-~~~~~e~Sa~~~~~v~~~ 150 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-----NIPIVLCGNKVDIKDR---KVKA-KQITFHRKK-NLQYYEISAKSNYNFEKP 150 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEEchhcccc---cCCH-HHHHHHHHc-CCEEEEEeCCCCCChHHH
Confidence 99999999999999999887653 7899999999999732 2222 233444443 488999999999999999
Q ss_pred HHHHHHHHhhcC
Q 028654 169 FECIAKNALKNE 180 (206)
Q Consensus 169 ~~~i~~~~~~~~ 180 (206)
|++|.+.+.+.+
T Consensus 151 f~~l~~~~~~~~ 162 (166)
T cd00877 151 FLWLARKLLGNP 162 (166)
T ss_pred HHHHHHHHHhcc
Confidence 999999987643
No 61
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=3.5e-32 Score=186.82 Aligned_cols=159 Identities=37% Similarity=0.746 Sum_probs=138.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC--CeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
+||+++|.+|+|||||++++.++.+...+.++.+.++....+.+. +..+.+.+|||||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999998887778888877766667666 777899999999999999989999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|+|+++++++..+..|+..+..... +.|+++|+||+|+... ..+..++...++...+ .+++++|++++.|++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 152 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECG-----DIPMVLVQTKIDLLDQ--AVITNEEAEALAKRLQ-LPLFRTSVKDDFNVT 152 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCCCHH
Confidence 9999999999999999988865432 7899999999999754 4456677777887776 799999999999999
Q ss_pred HHHHHHHHH
Q 028654 167 AAFECIAKN 175 (206)
Q Consensus 167 ~l~~~i~~~ 175 (206)
++|++|.+.
T Consensus 153 ~l~~~l~~~ 161 (162)
T cd04106 153 ELFEYLAEK 161 (162)
T ss_pred HHHHHHHHh
Confidence 999999764
No 62
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=3.3e-32 Score=186.92 Aligned_cols=161 Identities=45% Similarity=0.798 Sum_probs=149.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 89 (206)
||+++|+.+||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+......++..+|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999998999998889999999999999999999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHH
Q 028654 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169 (206)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~ 169 (206)
++++++++.+..|+..+..... .+.|+++|+||.|+... +.+..++++.++...+ .+|+++|++++.|+.++|
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~----~~~~iivvg~K~D~~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f 153 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP----EDIPIIVVGNKSDLSDE--REVSVEEAQEFAKELG-VPYFEVSAKNGENVKEIF 153 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST----TTSEEEEEEETTTGGGG--SSSCHHHHHHHHHHTT-SEEEEEBTTTTTTHHHHH
T ss_pred cccccccccccccccccccccc----ccccceeeecccccccc--ccchhhHHHHHHHHhC-CEEEEEECCCCCCHHHHH
Confidence 9999999999999999988876 26799999999998863 6788889999999988 999999999999999999
Q ss_pred HHHHHHHh
Q 028654 170 ECIAKNAL 177 (206)
Q Consensus 170 ~~i~~~~~ 177 (206)
..+++.+.
T Consensus 154 ~~~i~~i~ 161 (162)
T PF00071_consen 154 QELIRKIL 161 (162)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
No 63
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=6.9e-32 Score=185.72 Aligned_cols=163 Identities=35% Similarity=0.618 Sum_probs=137.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|++|+|||||++++.+..+...+.++.+. .......+++..+.+.+|||||++++...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED-SYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 48999999999999999999998887776676653 33456667788889999999999999988889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|++++++++.+..|...+...... .+.|+++|+||+|+... +....+....++...+ .+++++||+++.|++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~---~~~pii~v~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l 153 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDR---DDVPIVLVGNKCDLESE--RVVSTEEGKELARQWG-CPFLETSAKERVNVDEA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--ceEcHHHHHHHHHHcC-CEEEEeecCCCCCHHHH
Confidence 999999999999988887665432 26799999999999764 4556677777777766 89999999999999999
Q ss_pred HHHHHHHHhh
Q 028654 169 FECIAKNALK 178 (206)
Q Consensus 169 ~~~i~~~~~~ 178 (206)
|++|++.+.+
T Consensus 154 ~~~l~~~~~~ 163 (164)
T smart00173 154 FYDLVREIRK 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999987653
No 64
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=5e-32 Score=185.87 Aligned_cols=160 Identities=40% Similarity=0.666 Sum_probs=141.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888777888877777777888888889999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|+++++++..+..|+..+..... ++.|+++|+||+|+... .....++...++...+ ..++++|++++.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~ 153 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALAS----PNIVVILVGNKSDLADQ--REVTFLEASRFAQENG-LLFLETSALTGENVEEA 153 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEEchhcchh--ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence 99999999999999888765432 37899999999999764 5566778888888777 89999999999999999
Q ss_pred HHHHHHH
Q 028654 169 FECIAKN 175 (206)
Q Consensus 169 ~~~i~~~ 175 (206)
|+++++.
T Consensus 154 ~~~~~~~ 160 (161)
T cd04113 154 FLKCARS 160 (161)
T ss_pred HHHHHHh
Confidence 9999875
No 65
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=8.7e-32 Score=185.15 Aligned_cols=164 Identities=49% Similarity=0.844 Sum_probs=143.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|++|+|||||++++.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777888888887788888888889999999999988888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|++++.+++.+..|+..+..... ++.|+++|+||+|+... .....+....+....+ .+++++|+.++.|++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~----~~~pivvv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~l 153 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD----PNVVIMLVGNKSDLEDQ--RQVSREEAEAFAEEHG-LPFFETSAKTNTNVEEA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEEchhcccc--cCCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence 99999999999889988876643 27899999999998754 4556677777777665 78999999999999999
Q ss_pred HHHHHHHHhhc
Q 028654 169 FECIAKNALKN 179 (206)
Q Consensus 169 ~~~i~~~~~~~ 179 (206)
+++|.+.+.++
T Consensus 154 ~~~i~~~~~~~ 164 (164)
T smart00175 154 FEELAREILKR 164 (164)
T ss_pred HHHHHHHHhhC
Confidence 99999988653
No 66
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=9.5e-32 Score=184.53 Aligned_cols=161 Identities=33% Similarity=0.594 Sum_probs=136.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 36899999999999999999999888777777765444 55566777778899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (206)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (206)
+|+++..++..+..|+..+...... .+.|+++|+||+|+.. .....++...++...+ .+++++||+++.|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~---~~~piivv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDS---DDVPMVLVGNKCDLAA---RTVSSRQGQDLAKSYG-IPYIETSAKTRQGVEE 152 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccccc---ceecHHHHHHHHHHhC-CeEEEecCCCCCCHHH
Confidence 9999999999998888888765422 3779999999999975 3455667777776665 7899999999999999
Q ss_pred HHHHHHHHH
Q 028654 168 AFECIAKNA 176 (206)
Q Consensus 168 l~~~i~~~~ 176 (206)
+|+++++.+
T Consensus 153 l~~~l~~~~ 161 (162)
T cd04138 153 AFYTLVREI 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998754
No 67
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=7.8e-32 Score=185.27 Aligned_cols=162 Identities=32% Similarity=0.558 Sum_probs=136.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
.++|+++|.+|+|||||++++..+.+...+.++.+ ......+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999988777767654 45556777788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (206)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (206)
+|+++++++..+..|...+...... .+.|+++|+||+|+... .....++...++...+ .+++++||+++.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piviv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 153 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGY---EKVPIILVGNKVDLESE--REVSSAEGRALAEEWG-CPFMETSAKSKTMVNE 153 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccchhc--CccCHHHHHHHHHHhC-CEEEEecCCCCCCHHH
Confidence 9999999999999998888765432 37899999999998653 3445556666766665 7899999999999999
Q ss_pred HHHHHHHHH
Q 028654 168 AFECIAKNA 176 (206)
Q Consensus 168 l~~~i~~~~ 176 (206)
+|.++++.+
T Consensus 154 l~~~l~~~l 162 (163)
T cd04176 154 LFAEIVRQM 162 (163)
T ss_pred HHHHHHHhc
Confidence 999998754
No 68
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=1.2e-31 Score=183.91 Aligned_cols=160 Identities=41% Similarity=0.685 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|++|||||||++++.+..+...+.++.+.++....+.+.+..+.+.+||+||+..+......+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988888888888888888888888889999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|++++++++.+..|+..+..... .+.|+++|+||+|+... .....++...++...+ .+++++|++++.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~----~~~~iilv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l 153 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG----NDVIIVLVGNKTDLSDK--RQVSTEEGEKKAKELN-AMFIETSAKAGHNVKEL 153 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEEEChhcccc--CccCHHHHHHHHHHhC-CEEEEEeCCCCCCHHHH
Confidence 99999999999999888765432 16899999999999643 5566677777777666 88999999999999999
Q ss_pred HHHHHHH
Q 028654 169 FECIAKN 175 (206)
Q Consensus 169 ~~~i~~~ 175 (206)
+++|.+.
T Consensus 154 ~~~i~~~ 160 (161)
T cd01861 154 FRKIASA 160 (161)
T ss_pred HHHHHHh
Confidence 9999875
No 69
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=2.2e-31 Score=183.16 Aligned_cols=162 Identities=31% Similarity=0.592 Sum_probs=136.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
.+||+++|++|+|||||++++.+..+...+.++.+..+ .....+.+..+.+.+|||||++++...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 47999999999999999999998887766666665443 44556788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (206)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (206)
+|++++.+++.+..|...+...... .+.|+++|+||+|+... .....++...++...+ .+++++||++|.|+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piiiv~NK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDR---DEFPMILVGNKADLEHQ--RKVSREEGQELARKLK-IPYIETSAKDRLNVDK 154 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC---CCCCEEEEeeCcccccc--ceecHHHHHHHHHHcC-CcEEEeeCCCCCCHHH
Confidence 9999999999999998888765332 26799999999999754 4455666777777766 7999999999999999
Q ss_pred HHHHHHHHH
Q 028654 168 AFECIAKNA 176 (206)
Q Consensus 168 l~~~i~~~~ 176 (206)
+|++|++.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04145 155 AFHDLVRVI 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998754
No 70
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=2.1e-31 Score=184.32 Aligned_cols=163 Identities=39% Similarity=0.677 Sum_probs=140.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc-cccccceecCcEEEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADCCVL 86 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~vi~ 86 (206)
.++|+++|++|+|||||++++....+...+.++.+.++....+.+.+..+.+.+||++|++.+. .....+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4799999999999999999999988887778888777877888888888999999999998876 467778899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccC---CC
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE---GF 163 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~ 163 (206)
|||+++++++..+..|+..+...... .+.|+++|+||+|+... +....+....++.... .+++++||++ +.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~~~ 155 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLP---NEVPRILVGNKCDLREQ--IQVPTDLAQRFADAHS-MPLFETSAKDPSEND 155 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCC---CCCCEEEEEECccchhh--cCCCHHHHHHHHHHcC-CcEEEEeccCCcCCC
Confidence 99999999999999999888765432 37899999999998764 5566677777877765 8999999999 88
Q ss_pred CHHHHHHHHHHHH
Q 028654 164 NVEAAFECIAKNA 176 (206)
Q Consensus 164 ~i~~l~~~i~~~~ 176 (206)
+++++|..+++.+
T Consensus 156 ~i~~~f~~l~~~~ 168 (170)
T cd04115 156 HVEAIFMTLAHKL 168 (170)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2.2e-31 Score=183.31 Aligned_cols=162 Identities=28% Similarity=0.444 Sum_probs=134.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+......+.+.+|||||++.+......+++.+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 6899999999999999999999988777777765444 444556677789999999999999888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|++++++++.+..|+..+...... ..++.|+++|+||+|+... +....++...++...+ .+++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGN-NIEKIPIMLVGNKCDESHK--REVSSNEGAACATEWN-CAFMETSAKTNHNVQEL 156 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcC-CCCCCCEEEEEECcccccc--CeecHHHHHHHHHHhC-CcEEEeecCCCCCHHHH
Confidence 999999999999888877655322 2247899999999999763 4456666666776665 78999999999999999
Q ss_pred HHHHHHH
Q 028654 169 FECIAKN 175 (206)
Q Consensus 169 ~~~i~~~ 175 (206)
|++|++.
T Consensus 157 f~~l~~~ 163 (165)
T cd04140 157 FQELLNL 163 (165)
T ss_pred HHHHHhc
Confidence 9999864
No 72
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2.8e-31 Score=186.92 Aligned_cols=156 Identities=31% Similarity=0.646 Sum_probs=135.7
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCCh
Q 028654 14 LGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM 93 (206)
Q Consensus 14 iG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~ 93 (206)
+|.+|||||||++++..+.+...+.++.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 59999999999999998888777888888888888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Q 028654 94 KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173 (206)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~ 173 (206)
.++..+..|...+.... ++.|+++|+||+|+.. +.+..+.. .++...+ +.|+++||++|.|++++|.+|+
T Consensus 81 ~S~~~i~~w~~~i~~~~-----~~~piilvgNK~Dl~~---~~v~~~~~-~~~~~~~-~~~~e~SAk~~~~v~~~F~~l~ 150 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDVKD---RKVKAKSI-TFHRKKN-LQYYDISAKSNYNFEKPFLWLA 150 (200)
T ss_pred HHHHHHHHHHHHHHHhC-----CCCCEEEEEECccccc---ccCCHHHH-HHHHHcC-CEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999998754 2789999999999864 23333333 4555554 8899999999999999999999
Q ss_pred HHHhhc
Q 028654 174 KNALKN 179 (206)
Q Consensus 174 ~~~~~~ 179 (206)
+.+.+.
T Consensus 151 ~~i~~~ 156 (200)
T smart00176 151 RKLIGD 156 (200)
T ss_pred HHHHhc
Confidence 998775
No 73
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=3.9e-31 Score=181.79 Aligned_cols=162 Identities=43% Similarity=0.747 Sum_probs=141.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
.+||+++|++|+|||||++++.++.+.....++.+..+....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998777778877777778888888889999999999998888888889999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (206)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (206)
+|+++++++..+..|+..+..... ++.|+++++||+|+... .....++...+....+ .+++++|+++|.|+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 153 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS----PNIIIALVGNKADLESK--RQVSTEEAQEYADENG-LLFFETSAKTGENVNE 153 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--CcCCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence 999999999999999998876542 37899999999998753 4456667777777766 8899999999999999
Q ss_pred HHHHHHHHH
Q 028654 168 AFECIAKNA 176 (206)
Q Consensus 168 l~~~i~~~~ 176 (206)
++++|++.+
T Consensus 154 l~~~l~~~l 162 (163)
T cd01860 154 LFTEIAKKL 162 (163)
T ss_pred HHHHHHHHh
Confidence 999999876
No 74
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=2.6e-31 Score=181.20 Aligned_cols=157 Identities=26% Similarity=0.479 Sum_probs=129.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|++|+|||||+.++..+.+...+.++ ...+ ...+.+++..+.+.+|||+|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 48999999999999999999988876655443 3334 46678888888999999999864 23567899999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|++++++++.+..|+..+..... .++.|+++|+||.|+.....+.+..++.+.+++..+.+.|++|||+++.|++++
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~---~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~ 150 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRN---ISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERV 150 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHH
Confidence 99999999999999998876542 236899999999998644446777888888887765589999999999999999
Q ss_pred HHHHHHH
Q 028654 169 FECIAKN 175 (206)
Q Consensus 169 ~~~i~~~ 175 (206)
|..+++.
T Consensus 151 f~~~~~~ 157 (158)
T cd04103 151 FQEAAQK 157 (158)
T ss_pred HHHHHhh
Confidence 9999864
No 75
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.9e-31 Score=183.19 Aligned_cols=164 Identities=24% Similarity=0.352 Sum_probs=136.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+.+||+++|.+|+|||||++++.++.+. ..+.++.+..+....+.+++..+.+.+||++|++.+......+++.+|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 5789999999999999999999999988 788888887777777778888889999999999998888888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++++.+++.+..|+..+.. ..+.|+++|+||+|+.+. .....++.+.++...+...++++||+++.|+
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~------~~~~p~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFM------LGEIPCLFVAAKADLDEQ--QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSS 154 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhcc------CCCCeEEEEEEccccccc--ccccccCHHHHHHHcCCCCCEEEEeccCccH
Confidence 99999999999888787765421 126899999999999654 2233344556666665345799999999999
Q ss_pred HHHHHHHHHHHhh
Q 028654 166 EAAFECIAKNALK 178 (206)
Q Consensus 166 ~~l~~~i~~~~~~ 178 (206)
+++|+.|++.+..
T Consensus 155 ~~lf~~l~~~~~~ 167 (169)
T cd01892 155 NELFTKLATAAQY 167 (169)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998764
No 76
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=3.6e-31 Score=183.84 Aligned_cols=162 Identities=28% Similarity=0.534 Sum_probs=136.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEEC
Q 028654 11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV 90 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 90 (206)
|+++|.+|+|||||++++.++.+...+.++....+ ...+.+++..+.+.+|||||++.+......+++.+|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999998877777765444 45566788888999999999999988888899999999999999
Q ss_pred CChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcEEEeec
Q 028654 91 NVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFETSA 159 (206)
Q Consensus 91 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (206)
+++++++.+. .|+..+..... +.|+++|+||+|+.... ...+..++...+++..+..+++++||
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 154 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-----NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSA 154 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecC
Confidence 9999999885 58887766432 78999999999986531 12366777788888887568999999
Q ss_pred cCCCCHHHHHHHHHHHHhh
Q 028654 160 KEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 160 ~~~~~i~~l~~~i~~~~~~ 178 (206)
+++.|++++|+.+++.+++
T Consensus 155 ~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 155 LTQEGVREVFEEAIRAALN 173 (174)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 9999999999999998764
No 77
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=4.6e-31 Score=191.49 Aligned_cols=167 Identities=29% Similarity=0.490 Sum_probs=138.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|.+|+|||||+++|.++.+...+.++.+ ++....+.+++..+.+.||||+|++.+......++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999888877777765 555667788888899999999999988887788889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCC-----CCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASP-----SDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (206)
|+++.++++.+..|+..+...... ....+.|+++|+||+|+... +.+..+++..+........++++||+++.
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~--~~v~~~ei~~~~~~~~~~~~~evSAktg~ 157 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP--REVQRDEVEQLVGGDENCAYFEVSAKKNS 157 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc--cccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence 999999999999998888654211 12237899999999999753 44666777777654444789999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 028654 164 NVEAAFECIAKNALK 178 (206)
Q Consensus 164 ~i~~l~~~i~~~~~~ 178 (206)
|++++|++|++.+..
T Consensus 158 gI~elf~~L~~~~~~ 172 (247)
T cd04143 158 NLDEMFRALFSLAKL 172 (247)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999996643
No 78
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=1e-30 Score=183.38 Aligned_cols=168 Identities=29% Similarity=0.506 Sum_probs=136.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
.||+++|++|+|||||++++..+.+...+.++....+ ...+.+++..+.+.+||++|++.+.......+..+|++++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 4899999999999999999998777766666654443 345566777888999999999888776667788999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC--------cceecHHHHHHHHHHcCCCcEEEeec
Q 028654 89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN--------SRVVSEKKAKAWCASKGNIPYFETSA 159 (206)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (206)
|+++.++++.+. .|...+..... +.|+++|+||+|+.... .+.+..++...+++..+..+++++||
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 155 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-----NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSA 155 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccC
Confidence 999999999885 68887765432 68999999999985421 23455667778888877668999999
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCC
Q 028654 160 KEGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 160 ~~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
++|.|++++|+++.+.++..++.
T Consensus 156 ~~~~~v~~~f~~l~~~~~~~~~~ 178 (187)
T cd04129 156 LTGEGVDDVFEAATRAALLVRKS 178 (187)
T ss_pred CCCCCHHHHHHHHHHHHhcccCc
Confidence 99999999999999988776664
No 79
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=1.1e-30 Score=180.44 Aligned_cols=163 Identities=33% Similarity=0.609 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
++|+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.++++++|+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 6899999999999999999999888777777765443 566677888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|++++++++.+..|...+..... ..+.|+++++||+|+... +....++...+.+..+..+++++||+++.|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKD---SDNVPMVLVGNKADLEDD--RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEV 155 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC---CCCCCEEEEEEChhcccc--CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHH
Confidence 99999999999999888876432 237899999999999754 4556666677777766678999999999999999
Q ss_pred HHHHHHHHh
Q 028654 169 FECIAKNAL 177 (206)
Q Consensus 169 ~~~i~~~~~ 177 (206)
|+++++.++
T Consensus 156 f~~i~~~~~ 164 (168)
T cd04177 156 FIDLVRQII 164 (168)
T ss_pred HHHHHHHHh
Confidence 999998664
No 80
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-31 Score=168.61 Aligned_cols=194 Identities=34% Similarity=0.614 Sum_probs=169.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
.+.++-+++|.-|+|||.|++.|..+.|-.....+.+..+....+++.+..+++++|||.|+++|+...+.+++.+-+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 45789999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++.+.+...+..|+........ ++.-+++++||.|+... +.+..++.+.|+.+.+ ..|.++|+++|.++
T Consensus 89 mvyditrrstynhlsswl~dar~ltn----pnt~i~lignkadle~q--rdv~yeeak~faeeng-l~fle~saktg~nv 161 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARNLTN----PNTVIFLIGNKADLESQ--RDVTYEEAKEFAEENG-LMFLEASAKTGQNV 161 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhccCC----CceEEEEecchhhhhhc--ccCcHHHHHHHHhhcC-eEEEEecccccCcH
Confidence 99999999999999999988765443 47778999999999876 8899999999999988 88999999999999
Q ss_pred HHHHHHHHHHHhhcCCC-------------CCCCCCccccCCCCCccCCCCCCC
Q 028654 166 EAAFECIAKNALKNEPQ-------------EEDYLPDTIDVGGGQQQRSSGCEC 206 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~c~c 206 (206)
++.|-.-.+.++.+-+. ..+..|..-+...+....+.||+|
T Consensus 162 edafle~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c 215 (215)
T KOG0097|consen 162 EDAFLETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC 215 (215)
T ss_pred HHHHHHHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence 99999998888776554 223345555555556777788988
No 81
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=1.5e-30 Score=178.64 Aligned_cols=161 Identities=42% Similarity=0.706 Sum_probs=136.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|++|+|||||++++.+..+...+.++.+.......+.+.+..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998887666667666666666777777789999999999988888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|++++++++.+..|+..+...... +.|+++|+||+|+... .....+++..+....+ .+++++|++++.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~s~~~~~gi~~~ 153 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGN----NISLVIVGNKIDLERQ--RVVSKSEAEEYAKSVG-AKHFETSAKTGKGIEEL 153 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence 999999999999998888766543 6799999999999754 4455566666666665 78999999999999999
Q ss_pred HHHHHHHH
Q 028654 169 FECIAKNA 176 (206)
Q Consensus 169 ~~~i~~~~ 176 (206)
++++.+.+
T Consensus 154 ~~~l~~~~ 161 (162)
T cd04123 154 FLSLAKRM 161 (162)
T ss_pred HHHHHHHh
Confidence 99998865
No 82
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=1.1e-30 Score=179.75 Aligned_cols=160 Identities=32% Similarity=0.600 Sum_probs=133.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCCCCcccccceeeEEEEEEeC-CeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+||+++|++|||||||++++... .+...+.++.+.++....+.+. +..+.+.+|||||++.+......+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999864 5667777888777766666664 56789999999999988888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+. .....+....+....+ .+++++|++++.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 152 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-----KHMPGVLVGNKMDLADK--AEVTDAQAQAFAQANQ-LKFFKTSALRGVGY 152 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccc--cCCCHHHHHHHHHHcC-CeEEEEeCCCCCCh
Confidence 9999999999999999998877653 26799999999999754 3344445555555555 78999999999999
Q ss_pred HHHHHHHHHHH
Q 028654 166 EAAFECIAKNA 176 (206)
Q Consensus 166 ~~l~~~i~~~~ 176 (206)
+++|+.+.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (164)
T cd04101 153 EEPFESLARAF 163 (164)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 83
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=1.6e-30 Score=178.43 Aligned_cols=160 Identities=38% Similarity=0.676 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|++|+|||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887767788777777777777888889999999999988888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|.+++.++..+..|+..+...... .+.|+++|+||+|+.. .....++...+....+ .+++++|+++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~---~~~~~~iv~nK~D~~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTN---NDIVKMLVGNKIDKEN---REVTREEGLKFARKHN-MLFIETSAKTRDGVQQA 153 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCC---CCCcEEEEEECCcccc---cccCHHHHHHHHHHcC-CEEEEEecCCCCCHHHH
Confidence 999999999998898888766442 3789999999999974 3445567777777665 88999999999999999
Q ss_pred HHHHHHH
Q 028654 169 FECIAKN 175 (206)
Q Consensus 169 ~~~i~~~ 175 (206)
++++.+.
T Consensus 154 ~~~~~~~ 160 (161)
T cd01863 154 FEELVEK 160 (161)
T ss_pred HHHHHHh
Confidence 9999875
No 84
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=1.3e-30 Score=180.82 Aligned_cols=160 Identities=30% Similarity=0.490 Sum_probs=134.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|++|+|||||++++..+.+...+.++. .+.....+.+++..+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999888877777765 4444556777888899999999999999998888999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcEEEe
Q 028654 89 DVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
|++++++++.+ ..|+..+.... ++.|+++|+||+|+.... .+.+..++...++...+..+++++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~ 154 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-----PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIEC 154 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEE
Confidence 99999999987 46877776432 268999999999986532 356677788888888775599999
Q ss_pred eccCCCCHHHHHHHHHH
Q 028654 158 SAKEGFNVEAAFECIAK 174 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~ 174 (206)
||+++.|++++|+.++-
T Consensus 155 Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 155 SALTQKNLKEVFDTAIL 171 (173)
T ss_pred eCCCCCCHHHHHHHHHh
Confidence 99999999999998764
No 85
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.98 E-value=1.9e-30 Score=180.24 Aligned_cols=163 Identities=26% Similarity=0.453 Sum_probs=135.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|++|+|||||++++..+.+...+.++... .....+.+++..+.+.+|||||++.+......+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 58999999999999999999999887666666543 33445667888888999999999999888888999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc----------ceecHHHHHHHHHHcCCCcEEEe
Q 028654 89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
|++++++++.+. .|...+... .++.|+++|+||+|+.+... ..+..++...+++..+..+++++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-----~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 154 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-----APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVEC 154 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999998885 576666543 23789999999999865421 24566778888888876689999
Q ss_pred eccCCCCHHHHHHHHHHHHh
Q 028654 158 SAKEGFNVEAAFECIAKNAL 177 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~~ 177 (206)
||+++.|++++|+.+++.++
T Consensus 155 Sa~~~~gi~~~f~~~~~~~~ 174 (174)
T cd04135 155 SALTQKGLKTVFDEAILAIL 174 (174)
T ss_pred cCCcCCCHHHHHHHHHHHhC
Confidence 99999999999999998763
No 86
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=4.6e-30 Score=177.45 Aligned_cols=163 Identities=39% Similarity=0.654 Sum_probs=137.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..++|+++|++|+|||||++++..+.+...+.++.+.+.....+.+.+..+.+.+||+||+..+......+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999999888777777777777777778888888899999999999888888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|+|++++.++..+..|+..+..... .+.|+++|+||+|+... +....+....+..... .+++++|+++|.|++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~----~~~~~i~v~NK~D~~~~--~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~ 158 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYAN----NKVITILVGNKIDLAER--REVSQQRAEEFSDAQD-MYYLETSAKESDNVE 158 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEeeCCCCCCHH
Confidence 9999999999888889887765543 26789999999998754 4455555566665555 789999999999999
Q ss_pred HHHHHHHHHH
Q 028654 167 AAFECIAKNA 176 (206)
Q Consensus 167 ~l~~~i~~~~ 176 (206)
++|++|.+.+
T Consensus 159 ~l~~~i~~~~ 168 (169)
T cd04114 159 KLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHh
Confidence 9999999865
No 87
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=4.9e-30 Score=183.97 Aligned_cols=164 Identities=27% Similarity=0.402 Sum_probs=133.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccccccee-cCcEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR-GADCCVL 86 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~vi~ 86 (206)
+||+++|.+|+|||||+++|..+.+. ..+.++.+.+.....+.+++....+.+|||||++.+ ....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 58999999999999999999887775 555555554666777788888899999999998822 2334556 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|||++++.+++.+..|+..+..... ..+.|+++|+||+|+... +.+..++...++...+ .+++++||+++.|++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~---~~~~piilV~NK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~SA~~~~gv~ 152 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQ---LEDRPIILVGNKSDLARS--REVSVQEGRACAVVFD-CKFIETSAGLQHNVD 152 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEChhcccc--ceecHHHHHHHHHHcC-CeEEEecCCCCCCHH
Confidence 9999999999999999888866432 237899999999999765 5666777777777666 789999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 028654 167 AAFECIAKNALKNE 180 (206)
Q Consensus 167 ~l~~~i~~~~~~~~ 180 (206)
++|++|++.+....
T Consensus 153 ~l~~~l~~~~~~~~ 166 (221)
T cd04148 153 ELLEGIVRQIRLRR 166 (221)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999886433
No 88
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=3.7e-30 Score=180.87 Aligned_cols=160 Identities=25% Similarity=0.416 Sum_probs=126.7
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCcccccce-eeEEEE--------EEeCCeEEEEEEeeCCCcccccc
Q 028654 8 LLKVIILGDSGVGKTSLMN-QYVNRK-----FSNQYKATIGA-DFLTKE--------VQFEDRLFTLQIWDTAGQERFQS 72 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~ 72 (206)
.+||+++|.+|+|||||+. ++.++. +...+.||.+. +.+... ..+++..+.+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 555443 33455666642 222211 246788899999999998753
Q ss_pred ccccceecCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC-----------------Cc
Q 028654 73 LGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGG-----------------NS 134 (206)
Q Consensus 73 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-----------------~~ 134 (206)
....+++.+|++|+|||++++.+++.+. .|...+.... ++.|+++|+||+|+... ..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-----PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNA 154 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-----CCCCEEEEEEchhccccccchhhhcccccccccccC
Confidence 4456789999999999999999999986 5888876553 26799999999998642 13
Q ss_pred ceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028654 135 RVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~ 175 (206)
+.+..++++.+++..+ ++|++|||++|.|++++|+.+++.
T Consensus 155 ~~V~~~e~~~~a~~~~-~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 155 DILPPETGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CccCHHHHHHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHHh
Confidence 6788899999999888 699999999999999999999874
No 89
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=1e-29 Score=176.72 Aligned_cols=162 Identities=27% Similarity=0.524 Sum_probs=133.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
.||+++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+......++..+|++++|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999988877777765544 345667888889999999999988888878889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc----------ceecHHHHHHHHHHcCCCcEEEe
Q 028654 89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
|++++++++.+. .|...+.... .+.|+++|+||+|+.+... ..+..++...++...+..+++++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 155 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMEC 155 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEe
Confidence 999999988874 5777665432 2789999999999865321 23345667777777766789999
Q ss_pred eccCCCCHHHHHHHHHHHH
Q 028654 158 SAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~ 176 (206)
||++|.|++++|++|.+.+
T Consensus 156 Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 156 SAKTKEGVREVFEMATRAA 174 (175)
T ss_pred ccccCcCHHHHHHHHHHHh
Confidence 9999999999999999765
No 90
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=6.5e-30 Score=174.61 Aligned_cols=159 Identities=47% Similarity=0.855 Sum_probs=139.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|++|+|||||++++.+..+...+.++.+.++....+...+....+.+||+||+..+......+++.+|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988877888888888888888888899999999999998888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|+++++++..+..|+..+..... .+.|+++++||+|+... .....++...+..... .+++++|++++.|++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP----ENIPIILVGNKIDLEDQ--RQVSTEEAQQFAKENG-LLFFETSAKTGENVEEL 153 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEEccccccc--ccccHHHHHHHHHHcC-CeEEEEecCCCCCHHHH
Confidence 99999999999999988877653 26799999999999733 4566777888877754 89999999999999999
Q ss_pred HHHHHH
Q 028654 169 FECIAK 174 (206)
Q Consensus 169 ~~~i~~ 174 (206)
+++|.+
T Consensus 154 ~~~i~~ 159 (159)
T cd00154 154 FQSLAE 159 (159)
T ss_pred HHHHhC
Confidence 999863
No 91
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=4.1e-30 Score=177.06 Aligned_cols=162 Identities=28% Similarity=0.459 Sum_probs=131.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc-cccccccceecCcEEEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~vi~v~ 88 (206)
+|+++|++|+|||||+++++.+.+...+.++....+ ...+.+++..+.+.+||+||+.. .......+++.+|++++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999998877666666654333 45567788888999999999885 3345667788999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC-CCHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG-FNVEA 167 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~i~~ 167 (206)
|++++++++.+..|+..+..... ...+.|+++|+||+|+... +.+..++...++...+ .+++++|++++ .|+++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKK--RDREIPVILVGNKADLLHY--RQVSTEEGEKLASELG-CLFFEVSAAEDYDGVHS 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECCchHHh--CccCHHHHHHHHHHcC-CEEEEeCCCCCchhHHH
Confidence 99999999999999888776432 1236899999999998654 4556677778887777 78999999999 49999
Q ss_pred HHHHHHHHHh
Q 028654 168 AFECIAKNAL 177 (206)
Q Consensus 168 l~~~i~~~~~ 177 (206)
+|..+.+.+.
T Consensus 155 ~f~~l~~~~~ 164 (165)
T cd04146 155 VFHELCREVR 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=2.4e-29 Score=172.91 Aligned_cols=163 Identities=34% Similarity=0.568 Sum_probs=136.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|++|+|||||++++....+...+.++.+..+ ......++..+.+.+||+||+..+......+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999887776666665443 455567778889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|++++.++..+..|+..+..... ..+.|+++|+||+|+... .....++...+....+ .+++++|++++.|++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~---~~~~piiiv~NK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l 153 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKD---DDNVPLLLVGNKCDLEDK--RQVSSEEAANLARQWG-VPYVETSAKTRQNVEKA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEccccccc--cccCHHHHHHHHHHhC-CeEEEeeCCCCCCHHHH
Confidence 99999999999999888887644 227899999999999753 3345556666666665 78999999999999999
Q ss_pred HHHHHHHHhh
Q 028654 169 FECIAKNALK 178 (206)
Q Consensus 169 ~~~i~~~~~~ 178 (206)
|+++.+.+.+
T Consensus 154 ~~~l~~~~~~ 163 (164)
T cd04139 154 FYDLVREIRQ 163 (164)
T ss_pred HHHHHHHHHh
Confidence 9999987753
No 93
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.8e-29 Score=178.57 Aligned_cols=168 Identities=30% Similarity=0.437 Sum_probs=134.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 89 (206)
||+++|.+|+|||||++++.+..+...+.++.. ......+.+.+..+.+.+||+||+..+......++..+|++++|+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888766666653 3445567777877899999999999988888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHH
Q 028654 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169 (206)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~ 169 (206)
++++.+++.+..|+..+...... .+.|+++|+||+|+.... .....+............+++++||++|.|++++|
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~NK~Dl~~~~-~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKED---KFVPIVVVGNKADSLEEE-RQVPAKDALSTVELDWNCGFVETSAKDNENVLEVF 155 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEEcccccccc-ccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHH
Confidence 99999999999998888765432 278999999999987531 33334344433332223789999999999999999
Q ss_pred HHHHHHHhhcCCC
Q 028654 170 ECIAKNALKNEPQ 182 (206)
Q Consensus 170 ~~i~~~~~~~~~~ 182 (206)
++|++.+....+.
T Consensus 156 ~~l~~~~~~~~~~ 168 (198)
T cd04147 156 KELLRQANLPYNL 168 (198)
T ss_pred HHHHHHhhccccc
Confidence 9999988755553
No 94
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=2e-31 Score=167.83 Aligned_cols=163 Identities=41% Similarity=0.674 Sum_probs=148.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECC
Q 028654 13 ILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN 91 (206)
Q Consensus 13 viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~ 91 (206)
++|.+++|||.|+-++-.+.|. ....++.+.++..+.+..+++.+++++|||.|+++|++....+++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999888777665 677888999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHH
Q 028654 92 VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC 171 (206)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~ 171 (206)
+..+|++.+.|+.++..+..+ .+.+.+++||+|+.+. +.+..++.+.++..++ +||.++|+++|.+++-.|-.
T Consensus 82 nkasfdn~~~wlsei~ey~k~----~v~l~llgnk~d~a~e--r~v~~ddg~kla~~y~-ipfmetsaktg~nvd~af~~ 154 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKE----AVALMLLGNKCDLAHE--RAVKRDDGEKLAEAYG-IPFMETSAKTGFNVDLAFLA 154 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHh----hHhHhhhccccccchh--hccccchHHHHHHHHC-CCceeccccccccHhHHHHH
Confidence 999999999999999988765 5678899999999876 7788899999999998 99999999999999999999
Q ss_pred HHHHHhhcCCC
Q 028654 172 IAKNALKNEPQ 182 (206)
Q Consensus 172 i~~~~~~~~~~ 182 (206)
|.+.+.+..-.
T Consensus 155 ia~~l~k~~~~ 165 (192)
T KOG0083|consen 155 IAEELKKLKMG 165 (192)
T ss_pred HHHHHHHhccC
Confidence 99988765443
No 95
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=2.8e-29 Score=173.47 Aligned_cols=160 Identities=19% Similarity=0.357 Sum_probs=125.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 89 (206)
||+++|.++||||||++++.+..+. .+.+|.+..+. .+.+ ..+.+.+||+||+..+...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 5899999999999999999988654 35566554443 3333 34789999999999888888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcC-----CCcEEEeeccCCCC
Q 028654 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-----NIPYFETSAKEGFN 164 (206)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~ 164 (206)
+++++++..+..|+..+..... ..+.|+++|+||+|+.+. ...+++..+..... .+.++++||++|.|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 148 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKE---LRDALLLIFANKQDVAGA----LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMG 148 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChh---hCCCCEEEEEeCcCcccC----CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCC
Confidence 9999999998888887764321 225799999999999642 44555555543211 13688999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 028654 165 VEAAFECIAKNALKNEP 181 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~~ 181 (206)
++++|++|.+.+++..+
T Consensus 149 v~~~f~~l~~~~~~~~~ 165 (169)
T cd04158 149 LYEGLDWLSRQLVAAGV 165 (169)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 99999999998877654
No 96
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=6.3e-29 Score=170.14 Aligned_cols=159 Identities=36% Similarity=0.655 Sum_probs=135.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 89 (206)
||+++|++|||||||++++.+..+...+.++.. ......+.+.+..+.+.+||+||+..+......+++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777666665 5556666677777899999999999888888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHH
Q 028654 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169 (206)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~ 169 (206)
+++++++..+..|...+...... .+.|+++|+||+|+... .....+.+..+....+ .+++++|++++.|+++++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDD---EDIPIVLVGNKCDLENE--RQVSKEEGKALAKEWG-CPFIETSAKDNINIDEVF 153 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECCccccc--ceecHHHHHHHHHHcC-CcEEEeccCCCCCHHHHH
Confidence 99999999998888888766442 36799999999999864 5566777888877766 899999999999999999
Q ss_pred HHHHHH
Q 028654 170 ECIAKN 175 (206)
Q Consensus 170 ~~i~~~ 175 (206)
++|.+.
T Consensus 154 ~~l~~~ 159 (160)
T cd00876 154 KLLVRE 159 (160)
T ss_pred HHHHhh
Confidence 999875
No 97
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=3.4e-29 Score=175.05 Aligned_cols=167 Identities=22% Similarity=0.291 Sum_probs=128.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEe-CCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
.++|+++|.+|||||||++++....+... .++.+.......+.. .+..+.+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 47999999999999999999998776543 566555554444443 3356889999999999888888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH--c---CCCcEEEeeccC
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS--K---GNIPYFETSAKE 161 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~s~~~ 161 (206)
|+|++++.++..+..|+..+...... .+.|+++|+||+|+... ...+++..+... . ...+++++||++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~---~~~p~iiv~NK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 154 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSEN---QGVPVLVLANKQDLPNA----LSVSEVEKLLALHELSASTPWHVQPACAII 154 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhc---CCCcEEEEEECcCcccc----CCHHHHHHHhCccccCCCCceEEEEeeccc
Confidence 99999988888887787777654322 26899999999998643 233444443321 1 124688999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCC
Q 028654 162 GFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 162 ~~~i~~l~~~i~~~~~~~~~~ 182 (206)
+.|+++++++|.+.+.+..+-
T Consensus 155 ~~gi~~l~~~l~~~l~~~~~~ 175 (183)
T cd04152 155 GEGLQEGLEKLYEMILKRRKM 175 (183)
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999988765553
No 98
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=1.1e-28 Score=170.91 Aligned_cols=160 Identities=29% Similarity=0.541 Sum_probs=129.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|++|+|||||+++|.+..+...+.++.. ..........+..+.+.+||+||++++.......++.+|++++|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999988666666654 334455567788889999999999988887888889999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcc---------eecHHHHHHHHHHcCCCcEEEee
Q 028654 89 DVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR---------VVSEKKAKAWCASKGNIPYFETS 158 (206)
Q Consensus 89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~s 158 (206)
|++++.++... ..|+..+..... +.|+++|+||+|+...... ....++...+....+..+++++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 154 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-----NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECS 154 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEee
Confidence 99998888776 456666654432 6899999999999765432 23466777777777755999999
Q ss_pred ccCCCCHHHHHHHHHH
Q 028654 159 AKEGFNVEAAFECIAK 174 (206)
Q Consensus 159 ~~~~~~i~~l~~~i~~ 174 (206)
++++.|+++++++|.+
T Consensus 155 a~~~~gi~~l~~~i~~ 170 (171)
T cd00157 155 ALTQEGVKEVFEEAIR 170 (171)
T ss_pred cCCCCCHHHHHHHHhh
Confidence 9999999999999875
No 99
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=7.6e-30 Score=175.92 Aligned_cols=156 Identities=16% Similarity=0.280 Sum_probs=120.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..++|+++|.+|+|||||++++..+.+. .+.++.+.++. .+.. ..+.+.+|||||++.+...+..+++.+|++++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999877654 34566655443 2223 34789999999999998888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeeccCC
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEG 162 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~ 162 (206)
|+|++++.++..+..|+..+..... ..+.|+++|+||+|+.+. ...+++..+... .....++++||++|
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g 155 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDRE---MRDALLLVFANKQDLPDA----MKPHEIQEKLGLTRIRDRNWYVQPSCATSG 155 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHh---hcCCcEEEEEECcCCccC----CCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence 9999999888888777766653211 126799999999998643 344555554321 11246899999999
Q ss_pred CCHHHHHHHHHH
Q 028654 163 FNVEAAFECIAK 174 (206)
Q Consensus 163 ~~i~~l~~~i~~ 174 (206)
.|++++|++|.+
T Consensus 156 ~gv~~~~~~l~~ 167 (168)
T cd04149 156 DGLYEGLTWLSS 167 (168)
T ss_pred CChHHHHHHHhc
Confidence 999999999975
No 100
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=1.8e-28 Score=171.20 Aligned_cols=166 Identities=35% Similarity=0.531 Sum_probs=136.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
.||+++|.+|+|||||++++.+..+...+.++....+ ...+.+.+..+.+.+||+||++++......++..++++++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998887766666654433 445566777788999999999998888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l 168 (206)
|.++..+++.+..|+..+...... .+.|+++|+||+|+... +....++...++...+ .+++++|++++.|+.++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l 154 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGK---ESVPIVLVGNKSDLHTQ--RQVSTEEGKELAESWG-AAFLESSARENENVEEA 154 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEEchhhhhc--CccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence 999999999998888887765432 36799999999998753 3444556666666655 78999999999999999
Q ss_pred HHHHHHHHhhcCC
Q 028654 169 FECIAKNALKNEP 181 (206)
Q Consensus 169 ~~~i~~~~~~~~~ 181 (206)
+.++.+.+.+...
T Consensus 155 ~~~l~~~~~~~~~ 167 (180)
T cd04137 155 FELLIEEIEKVEN 167 (180)
T ss_pred HHHHHHHHHHhcC
Confidence 9999998877654
No 101
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=1.8e-29 Score=175.28 Aligned_cols=158 Identities=18% Similarity=0.281 Sum_probs=119.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..+||+++|.+|+|||||++++..+.+. .+.++.+..+. ...+ ..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 4689999999999999999999876654 35566655543 2333 34789999999999999889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeeccCC
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEG 162 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~ 162 (206)
|+|++++++++....|+..+.... ..++.|+++|+||.|+.+.. ..+++...... .....++++||++|
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 159 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNED---ELRDAVILVFANKQDLPDAM----KAAEITEKLGLHSIRDRNWYIQPTCATSG 159 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCH---hhcCCcEEEEEeCcCcccCC----CHHHHHHHhCccccCCCcEEEEEeeCCCC
Confidence 999999999988887777765421 12367999999999997532 22232222111 11235778999999
Q ss_pred CCHHHHHHHHHHHH
Q 028654 163 FNVEAAFECIAKNA 176 (206)
Q Consensus 163 ~~i~~l~~~i~~~~ 176 (206)
.|++++|++|.+.+
T Consensus 160 ~gv~e~~~~l~~~~ 173 (175)
T smart00177 160 DGLYEGLTWLSNNL 173 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
No 102
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.9e-29 Score=175.82 Aligned_cols=162 Identities=15% Similarity=0.284 Sum_probs=121.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+..+||+++|.++||||||++++..+.+. .+.++.+..+. .+.. ..+.+.+||+||++.+...+..+++.+|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 44689999999999999999999877664 35566655443 3333 3478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc----CCCcEEEeeccC
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----GNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~ 161 (206)
+|+|+++++++..+..++..+... ....+.|+++|+||+|+.... ..+++.....-. ..+.++++||++
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~---~~~~~~piilv~NK~Dl~~~~----~~~~~~~~l~l~~~~~~~~~~~~~Sa~~ 162 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcC---HhhCCCCEEEEEECCCCCCCC----CHHHHHHHhCccccCCCceEEEeccCCC
Confidence 999999998888776666655321 122378999999999997542 233333322111 112466899999
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 028654 162 GFNVEAAFECIAKNALKN 179 (206)
Q Consensus 162 ~~~i~~l~~~i~~~~~~~ 179 (206)
|+|++++|++|.+.+.++
T Consensus 163 g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 163 GEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCCHHHHHHHHHHHHhhc
Confidence 999999999999887653
No 103
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.1e-28 Score=170.10 Aligned_cols=163 Identities=24% Similarity=0.343 Sum_probs=123.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|.+|+|||||+++|.++.+...+..+ ...+ .....+.+..+.+.+|||||...+...+..++..+|++++|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999998876543322 2222 333445667789999999999887777777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC-CcEEEeeccCCCCHH
Q 028654 89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFETSAKEGFNVE 166 (206)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~ 166 (206)
|++++.+++.+. .|...+..... +.|+++|+||+|+.+........+.+..+...... .+++++||+++.|++
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-----~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 153 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-----KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVS 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHH
Confidence 999999999874 57666654332 67999999999997643211122333333333332 479999999999999
Q ss_pred HHHHHHHHHHhh
Q 028654 167 AAFECIAKNALK 178 (206)
Q Consensus 167 ~l~~~i~~~~~~ 178 (206)
++|+.+.+.+.+
T Consensus 154 ~lf~~~~~~~~~ 165 (166)
T cd01893 154 EVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHhcC
Confidence 999999998765
No 104
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=3e-29 Score=171.54 Aligned_cols=155 Identities=16% Similarity=0.304 Sum_probs=116.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|.+|||||||++++..+.+. .+.++.+..+. .+.+ ..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999877765 35666655442 2333 3478999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH---cCCCcEEEeeccCCCCH
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS---KGNIPYFETSAKEGFNV 165 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~i 165 (206)
|++++.++..+..|+..+..... ..+.|+++++||+|+.+.. ...+..+.+... ...+.++++||++|.|+
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv 149 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDE---LRDAVLLVFANKQDLPNAM---SAAEVTDKLGLHSLRNRNWYIQATCATSGDGL 149 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHH---hcCCCEEEEEECCCCCCCC---CHHHHHHHhCccccCCCCEEEEEeeCCCCCCH
Confidence 99999999888777776653211 1257999999999996531 111222222111 11245789999999999
Q ss_pred HHHHHHHHH
Q 028654 166 EAAFECIAK 174 (206)
Q Consensus 166 ~~l~~~i~~ 174 (206)
+++|++|.+
T Consensus 150 ~~~~~~l~~ 158 (159)
T cd04150 150 YEGLDWLSN 158 (159)
T ss_pred HHHHHHHhc
Confidence 999999864
No 105
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.6e-31 Score=170.18 Aligned_cols=180 Identities=44% Similarity=0.684 Sum_probs=156.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC---------CeEEEEEEeeCCCcccccccccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE---------DRLFTLQIWDTAGQERFQSLGVA 76 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~~~~ 76 (206)
++.++.+.+|.+|+|||+++.++..+.|......+.+.++..+.+-+. +..+.+++|||.|+++|+++...
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 356788899999999999999999999999999999999988877663 23578999999999999999999
Q ss_pred ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654 77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
+++.|-+++++||+++..+|.++..|+.++.-++--. +.-+++++||+|+.+. +.+..+....++..++ +|||+
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE---~PDivlcGNK~DL~~~--R~Vs~~qa~~La~kyg-lPYfE 160 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE---NPDIVLCGNKADLEDQ--RVVSEDQAAALADKYG-LPYFE 160 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccC---CCCEEEEcCccchhhh--hhhhHHHHHHHHHHhC-CCeee
Confidence 9999999999999999999999999999998765433 4459999999999876 8889999999999998 99999
Q ss_pred eeccCCCCHHHHHHHHHHHHhhcCCC--CCCCCCccc
Q 028654 157 TSAKEGFNVEAAFECIAKNALKNEPQ--EEDYLPDTI 191 (206)
Q Consensus 157 ~s~~~~~~i~~l~~~i~~~~~~~~~~--~~~~~~~~~ 191 (206)
+||-+|.++++..+.++..++++-++ +...+|..+
T Consensus 161 TSA~tg~Nv~kave~LldlvM~Rie~~v~~s~~p~~~ 197 (219)
T KOG0081|consen 161 TSACTGTNVEKAVELLLDLVMKRIEQCVEKSEIPLLV 197 (219)
T ss_pred eccccCcCHHHHHHHHHHHHHHHHHHHHhhcccchhh
Confidence 99999999999999999988776655 344455443
No 106
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=6e-29 Score=173.49 Aligned_cols=161 Identities=17% Similarity=0.299 Sum_probs=120.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..+||+++|++|+|||||++++..+.+.. +.++.+..+. .+.. ..+.+.+|||||++.+...+..+++.+|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999998776653 5566654443 3333 34789999999999999889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeeccCC
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEG 162 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~ 162 (206)
|+|+++++++.....++..+... ....+.|+++|+||.|+.+.. ..+++...... ...+.++++||++|
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~---~~~~~~piilv~NK~Dl~~~~----~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg 163 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSE---DELRDAVLLVFANKQDLPNAM----STTEVTEKLGLHSVRQRNWYIQGCCATTA 163 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhC---HhhcCCCEEEEEeCCCCCCCC----CHHHHHHHhCCCcccCCcEEEEeeeCCCC
Confidence 99999998888877666655432 112367999999999986531 22222221111 11135678999999
Q ss_pred CCHHHHHHHHHHHHhhc
Q 028654 163 FNVEAAFECIAKNALKN 179 (206)
Q Consensus 163 ~~i~~l~~~i~~~~~~~ 179 (206)
.|++++|++|.+.+.+.
T Consensus 164 ~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 164 QGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999877653
No 107
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=3.9e-29 Score=171.01 Aligned_cols=169 Identities=28% Similarity=0.493 Sum_probs=152.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC-CeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
..+|++++|...+|||+|+..+..+.|+..+.||.. +.+...+.++ ++.+.+.+|||.|+++|...+...+..+|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 468999999999999999999999999999999996 5567778885 99999999999999999998888999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcE
Q 028654 86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPY 154 (206)
Q Consensus 86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 154 (206)
+||++.++++++++ .+|+.++..+++ +.|+|+|++|.||..+. ...+..++...++++.+...|
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp-----~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y 156 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCP-----NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKY 156 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCC-----CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCccee
Confidence 99999999999996 889999988874 88999999999998532 135778889999999998999
Q ss_pred EEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 155 FETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
+++||++..|++++|+..+..++..++
T Consensus 157 ~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 157 LECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred eeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999999999988665
No 108
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=8.5e-28 Score=172.18 Aligned_cols=168 Identities=29% Similarity=0.588 Sum_probs=141.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
....+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+......++..++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 45579999999999999999998888888888888888888777777788889999999999998888888888999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|+|+++..++..+..|+..+.... .+.|+++++||+|+... ....+. ..+....+ ..++++|++++.|
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~i~lv~nK~Dl~~~---~~~~~~-~~~~~~~~-~~~~e~Sa~~~~~ 155 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVC-----ENIPIVLVGNKVDVKDR---QVKARQ-ITFHRKKN-LQYYDISAKSNYN 155 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccCccc---cCCHHH-HHHHHHcC-CEEEEEeCCCCCC
Confidence 99999999999999999998887653 26899999999998642 222333 24444444 7899999999999
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 028654 165 VEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~~~ 182 (206)
++++|.+|++.+...+.-
T Consensus 156 v~~~f~~ia~~l~~~p~~ 173 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNL 173 (215)
T ss_pred HHHHHHHHHHHHhhcccc
Confidence 999999999999876553
No 109
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=2.2e-28 Score=170.88 Aligned_cols=165 Identities=35% Similarity=0.566 Sum_probs=149.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
...+|+++|.+|+|||+|..++.+..|...+.|+.. +.+.+.+.+++..+.+.|+||+|++++..+...++..+|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 357999999999999999999999999999999986 6668888899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
||+++++.+|+.+..+...+...... ..+|+++|+||+|+... +++..++...++.... ++|+++||+.+.+++
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~---~~~PivlVGNK~Dl~~~--R~V~~eeg~~la~~~~-~~f~E~Sak~~~~v~ 154 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGR---DDVPIILVGNKCDLERE--RQVSEEEGKALARSWG-CAFIETSAKLNYNVD 154 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCc---CCCCEEEEEEcccchhc--cccCHHHHHHHHHhcC-CcEEEeeccCCcCHH
Confidence 99999999999999999988443332 26899999999999876 8899999999988888 679999999999999
Q ss_pred HHHHHHHHHHhh
Q 028654 167 AAFECIAKNALK 178 (206)
Q Consensus 167 ~l~~~i~~~~~~ 178 (206)
++|..+++.+-.
T Consensus 155 ~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 155 EVFYELVREIRL 166 (196)
T ss_pred HHHHHHHHHHHh
Confidence 999999997766
No 110
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=6.4e-29 Score=172.35 Aligned_cols=158 Identities=21% Similarity=0.386 Sum_probs=121.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
++..++|+++|++|+|||||++++.+..+. ...++.+ +....+.++ .+.+.+||+||++.+...+..++..+|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 456789999999999999999999987543 4445544 333444444 37889999999998888888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeecc
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAK 160 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~ 160 (206)
++|+|++++.++.....|+..+.... ...+.|+++|+||+|+.+. ...+++..+... ...++++++||+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEE---RLAGATLLILANKQDLPGA----LSEEEIREALELDKISSHHWRIQPCSAV 158 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECcccccC----CCHHHHHHHhCccccCCCceEEEeccCC
Confidence 99999999988888877777765422 1237899999999999753 234444444321 224689999999
Q ss_pred CCCCHHHHHHHHHH
Q 028654 161 EGFNVEAAFECIAK 174 (206)
Q Consensus 161 ~~~~i~~l~~~i~~ 174 (206)
+|.|++++|+++++
T Consensus 159 ~g~gi~~l~~~l~~ 172 (173)
T cd04154 159 TGEGLLQGIDWLVD 172 (173)
T ss_pred CCcCHHHHHHHHhc
Confidence 99999999999864
No 111
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=4.3e-29 Score=171.59 Aligned_cols=155 Identities=18% Similarity=0.246 Sum_probs=120.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 89 (206)
.|+++|++|+|||||+++|.+..+...+.++.+... ..++...+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 478999999999999999999877777777766443 2234456889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceec--HHHHHHHHHHcCCCcEEEeeccC------
Q 028654 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS--EKKAKAWCASKGNIPYFETSAKE------ 161 (206)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~------ 161 (206)
.+++.++..+..|+..+.... ++.|+++|+||+|+......... ...+..++...+ +.++++||++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-----~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~Sa~~~~s~~~ 150 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-----PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRR-WILQGTSLDDDGSPSR 150 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-----CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCc-eEEEEeeecCCCChhH
Confidence 999988888888877775332 37899999999998754211100 012233444333 7899999998
Q ss_pred CCCHHHHHHHHHH
Q 028654 162 GFNVEAAFECIAK 174 (206)
Q Consensus 162 ~~~i~~l~~~i~~ 174 (206)
++|++++|+.++.
T Consensus 151 ~~~v~~~~~~~~~ 163 (164)
T cd04162 151 MEAVKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998763
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=2.5e-28 Score=167.57 Aligned_cols=156 Identities=17% Similarity=0.277 Sum_probs=115.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+|+++|++|||||||+++|.+..+ ...+.++.+.... .+. ...+.+.+|||||+..+...+..+++.+|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 4455566554332 222 23478899999999999988999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH----HcCCCcEEEeeccCCCC
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAKEGFN 164 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~ 164 (206)
|++++.++.....|+..+..... ....+.|+++|+||+|+.+.. ..+++..... ......++++||++|.|
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~NK~Dl~~~~----~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~g 151 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPD-IKHRRVPILFFANKMDLPDAL----TAVKITQLLGLENIKDKPWHIFASNALTGEG 151 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcc-cccCCCCEEEEEeCccccCCC----CHHHHHHHhCCccccCceEEEEEeeCCCCCc
Confidence 99999888877777777654321 112378999999999997542 1222222211 11124689999999999
Q ss_pred HHHHHHHHHH
Q 028654 165 VEAAFECIAK 174 (206)
Q Consensus 165 i~~l~~~i~~ 174 (206)
++++|++|.+
T Consensus 152 v~~~~~~l~~ 161 (162)
T cd04157 152 LDEGVQWLQA 161 (162)
T ss_pred hHHHHHHHhc
Confidence 9999999864
No 113
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=5.1e-28 Score=167.88 Aligned_cols=156 Identities=23% Similarity=0.342 Sum_probs=117.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..++|+++|++|+|||||++++..+.+.. ..++.+..+. .+.+. .+.+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 36899999999999999999998877654 4555554443 33333 4789999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH-HHH---HcCCCcEEEeeccCC
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA-WCA---SKGNIPYFETSAKEG 162 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~s~~~~ 162 (206)
|+|+++++++.....++..+.... ...+.|+++++||+|+.+. ...+++.. +.. ....++++++||+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~---~~~~~p~viv~NK~Dl~~~----~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHE---DLRKAVLLVLANKQDLKGA----MTPAEISESLGLTSIRDHTWHIQGCCALTG 161 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhch---hhcCCCEEEEEECCCCCCC----CCHHHHHHHhCcccccCCceEEEecccCCC
Confidence 999999888877766666654332 2236899999999998753 12233222 211 112357999999999
Q ss_pred CCHHHHHHHHHH
Q 028654 163 FNVEAAFECIAK 174 (206)
Q Consensus 163 ~~i~~l~~~i~~ 174 (206)
.|++++|++|.+
T Consensus 162 ~gi~e~~~~l~~ 173 (174)
T cd04153 162 EGLPEGLDWIAS 173 (174)
T ss_pred CCHHHHHHHHhc
Confidence 999999999975
No 114
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=7.9e-28 Score=164.51 Aligned_cols=153 Identities=22% Similarity=0.360 Sum_probs=111.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 89 (206)
||+++|++++|||||++++..+.+.. ..++.+.+.. .+.+ ....+.+|||||+..+...+..+++.+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998776543 3455444332 3333 34789999999999988888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH-HHHH---cCCCcEEEeeccCCCCH
Q 028654 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA-WCAS---KGNIPYFETSAKEGFNV 165 (206)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~s~~~~~~i 165 (206)
++++.++.....++..+.... ...+.|+++|+||+|+.+.. ..+++.. +... ....+++++||+++.|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEE---ELKGAVLLVFANKQDMPGAL----SEAEISEKLGLSELKDRTWSIFKTSAIKGEGL 148 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhch---hhcCCcEEEEEeCCCCCCCC----CHHHHHHHhCccccCCCcEEEEEeeccCCCCH
Confidence 999877766655555443221 12368999999999997542 1222222 2111 11246999999999999
Q ss_pred HHHHHHHHH
Q 028654 166 EAAFECIAK 174 (206)
Q Consensus 166 ~~l~~~i~~ 174 (206)
+++|++|.+
T Consensus 149 ~~l~~~l~~ 157 (158)
T cd04151 149 DEGMDWLVN 157 (158)
T ss_pred HHHHHHHhc
Confidence 999999875
No 115
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=1.2e-27 Score=163.95 Aligned_cols=154 Identities=22% Similarity=0.358 Sum_probs=115.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 89 (206)
+|+++|++|+|||||++++.++.+.. ..++.+..+ ..+.. +..+.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999887653 345544333 33333 245789999999999888888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH--Hc---CCCcEEEeeccCCCC
Q 028654 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA--SK---GNIPYFETSAKEGFN 164 (206)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~s~~~~~~ 164 (206)
++++.++.....|+..+..... ..+.|+++|+||+|+.... ..+++..... .. .+.+++++||++|+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEH---IKGVPVVLLANKQDLPGAL----TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEG 149 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchh---hcCCCEEEEEECcccccCc----CHHHHHHHcCCcccCCCCcEEEEecccccCCC
Confidence 9998888888777777654321 1378999999999986431 1222222111 11 225689999999999
Q ss_pred HHHHHHHHHH
Q 028654 165 VEAAFECIAK 174 (206)
Q Consensus 165 i~~l~~~i~~ 174 (206)
++++|++|.+
T Consensus 150 v~~~~~~i~~ 159 (160)
T cd04156 150 LAEAFRKLAS 159 (160)
T ss_pred hHHHHHHHhc
Confidence 9999999864
No 116
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=1.5e-27 Score=164.44 Aligned_cols=157 Identities=18% Similarity=0.267 Sum_probs=118.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 89 (206)
+|+++|++|||||||++++.+. +...+.++.+.. ...+.+. .+.+.+||+||+..+...+..+++.+|++++|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4799999999999999999876 555666666543 3344443 4788999999999999889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHH--HHHHHHHHcC-CCcEEEeeccCC----
Q 028654 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK--KAKAWCASKG-NIPYFETSAKEG---- 162 (206)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~s~~~~---- 162 (206)
+++..++..+..|+..+..... ..+.|+++|+||+|+.+........+ .+..++...+ .+.++++||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~---~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~ 152 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPR---VSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKK 152 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCcc---ccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCc
Confidence 9999899988888887765322 23789999999999976521111111 1122222222 357888999998
Q ss_pred --CCHHHHHHHHHH
Q 028654 163 --FNVEAAFECIAK 174 (206)
Q Consensus 163 --~~i~~l~~~i~~ 174 (206)
.|+++.|+||..
T Consensus 153 ~~~g~~~~~~wl~~ 166 (167)
T cd04161 153 IDPSIVEGLRWLLA 166 (167)
T ss_pred cccCHHHHHHHHhc
Confidence 899999999975
No 117
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=7e-27 Score=164.51 Aligned_cols=152 Identities=25% Similarity=0.408 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC-----CeEEEEEEeeCCCccccccccccceecCcE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-----DRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 83 (206)
+||+++|.+|+|||||++++.++.+...+.++.+.++..+.+.+. +..+.+.+|||+|++.+......+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999888888888877776666663 467899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCC---------------CCCCCCcEEEEeeCCCCCCCCcceecHH----HHHH
Q 028654 84 CVLVYDVNVMKSFDNLNNWREEFLIQASP---------------SDPENFPFVVLGNKTDVDGGNSRVVSEK----KAKA 144 (206)
Q Consensus 84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~pviiv~nK~D~~~~~~~~~~~~----~~~~ 144 (206)
+|+|||++++++++.+..|+..+...... ....+.|+++|+||.|+.+. +....+ ....
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~--r~~~~~~~~~~~~~ 158 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE--KESSGNLVLTARGF 158 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh--cccchHHHhhHhhh
Confidence 99999999999999999999998764311 12247899999999999754 222222 2334
Q ss_pred HHHHcCCCcEEEeeccCCC
Q 028654 145 WCASKGNIPYFETSAKEGF 163 (206)
Q Consensus 145 ~~~~~~~~~~~~~s~~~~~ 163 (206)
++.+.+ ++.+..++.++.
T Consensus 159 ia~~~~-~~~i~~~c~~~~ 176 (202)
T cd04102 159 VAEQGN-AEEINLNCTNGR 176 (202)
T ss_pred HHHhcC-CceEEEecCCcc
Confidence 555565 788888887543
No 118
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=2.9e-27 Score=161.70 Aligned_cols=153 Identities=19% Similarity=0.349 Sum_probs=117.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 89 (206)
||+++|.+|||||||++++.+..+ ....++.+... ..+.+. ...+.+||+||+..+...+..+++.+|++++|+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998873 33444444333 334443 3689999999999988888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeeccCCCCH
Q 028654 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEGFNV 165 (206)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~~i 165 (206)
+++++++.....|+..+..... ..+.|+++|+||+|+.... ..+++...... ....+++++|+++|.|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEE---LKGVPLLIFANKQDLPGAL----SVSELIEKLGLEKILGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEeeccCCcccc----CHHHHHHhhChhhccCCcEEEEEeeCCCCCCH
Confidence 9999888888888777765433 2378999999999987642 23333333221 23468999999999999
Q ss_pred HHHHHHHHH
Q 028654 166 EAAFECIAK 174 (206)
Q Consensus 166 ~~l~~~i~~ 174 (206)
+++|++|..
T Consensus 149 ~~~~~~l~~ 157 (158)
T cd00878 149 DEGLDWLLQ 157 (158)
T ss_pred HHHHHHHhh
Confidence 999999875
No 119
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=1.9e-27 Score=164.05 Aligned_cols=154 Identities=25% Similarity=0.382 Sum_probs=114.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 83 (206)
+|+++|++|+|||||++++.+.... ..+.++.+... ..+.++ ...+.+|||||+..+...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 5899999999999999999764321 22333433333 334444 4788999999999998888889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc------CCCcEEEe
Q 028654 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK------GNIPYFET 157 (206)
Q Consensus 84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 157 (206)
+++|+|+++.+++.....|+..+.... ...+.|+++++||+|+... ...+++..+.... ...+++++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNE---ALEGVPLLILANKQDLPDA----LSVEEIKEVFQDKAEEIGRRDCLVLPV 149 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEEccccccC----CCHHHHHHHhccccccccCCceEEEEe
Confidence 999999999888887777777665432 1237899999999998653 2333444333221 23589999
Q ss_pred eccCCCCHHHHHHHHHH
Q 028654 158 SAKEGFNVEAAFECIAK 174 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~ 174 (206)
||++|.|+++++++|.+
T Consensus 150 Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 150 SALEGTGVREGIEWLVE 166 (167)
T ss_pred eCCCCcCHHHHHHHHhc
Confidence 99999999999999875
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=1.2e-26 Score=163.31 Aligned_cols=157 Identities=23% Similarity=0.363 Sum_probs=120.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
...+|+++|++|||||||++++.+..+. .+.++.+.. ...+.+.+ ..+.+||+||+..+...+..+++.+|++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999987753 344554433 33444554 678899999998888888888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc---------------CC
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK---------------GN 151 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~---------------~~ 151 (206)
|+|+++.+++.....|+..+..... ..+.|+++++||+|+... ...++++...... ..
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~---~~~~pvivv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEE---LANVPFLILGNKIDLPGA----VSEEELRQALGLYGTTTGKGVSLKVSGIRP 165 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCcc---ccCCCEEEEEeCCCCCCC----cCHHHHHHHhCcccccccccccccccCcee
Confidence 9999998888877777777654322 236899999999998642 3445555544321 22
Q ss_pred CcEEEeeccCCCCHHHHHHHHHHH
Q 028654 152 IPYFETSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 152 ~~~~~~s~~~~~~i~~l~~~i~~~ 175 (206)
..++++||+++.|++++|++|.+.
T Consensus 166 ~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 166 IEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEEEEeEecCCCChHHHHHHHHhh
Confidence 468999999999999999999875
No 121
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=7.6e-27 Score=161.78 Aligned_cols=159 Identities=30% Similarity=0.523 Sum_probs=123.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
....+|+++|+.|||||||++++..+... ...||.+.. ...+.+.+ ..+.+||.+|+..++..+..++..+|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 56799999999999999999999876533 345555443 44455555 67899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH--H---cCCCcEEEeecc
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA--S---KGNIPYFETSAK 160 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~s~~ 160 (206)
||+|.++.+.+......+..+..... ..+.|++|++||.|+.+. ...+++..... . ...+.++.+|+.
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~---~~~~piLIl~NK~D~~~~----~~~~~i~~~l~l~~l~~~~~~~v~~~sa~ 159 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPE---LKDIPILILANKQDLPDA----MSEEEIKEYLGLEKLKNKRPWSVFSCSAK 159 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGG---GTTSEEEEEEESTTSTTS----STHHHHHHHTTGGGTTSSSCEEEEEEBTT
T ss_pred EEEecccceeecccccchhhhcchhh---cccceEEEEeccccccCc----chhhHHHhhhhhhhcccCCceEEEeeecc
Confidence 99999998888777666666654322 237899999999998864 33344443322 1 234678999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028654 161 EGFNVEAAFECIAKNA 176 (206)
Q Consensus 161 ~~~~i~~l~~~i~~~~ 176 (206)
+|+|+.+.++||.+.+
T Consensus 160 ~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 160 TGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTBTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhcC
Confidence 9999999999999864
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=1.9e-26 Score=161.23 Aligned_cols=158 Identities=19% Similarity=0.305 Sum_probs=118.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+..++|+++|.+|+|||||++++.+..+. .+.++.+.. ...+.+.+ +.+.+||+||+..+...+..++..+|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 34589999999999999999999987654 233443332 22333433 78899999999988888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH-----------cCCCcE
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-----------KGNIPY 154 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 154 (206)
+|+|++++.++.....++..+.... ...+.|+++|+||+|+... ...+++.....- .....+
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~---~~~~~piliv~NK~Dl~~~----~~~~~i~~~l~l~~~~~~~~~~~~~~~~i 162 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDE---ELATVPFLILGNKIDAPYA----ASEDELRYALGLTNTTGSKGKVGVRPLEV 162 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCh---hhcCCCEEEEEeCccccCC----CCHHHHHHHcCCCcccccccccCCceeEE
Confidence 9999999888877777766655321 1237899999999998643 333444433211 123569
Q ss_pred EEeeccCCCCHHHHHHHHHHH
Q 028654 155 FETSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~ 175 (206)
+++||+++.|++++++||.++
T Consensus 163 ~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 163 FMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEeecccCCChHHHHHHHHhh
Confidence 999999999999999999865
No 123
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=6.3e-26 Score=156.58 Aligned_cols=157 Identities=17% Similarity=0.113 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc---------ccccee
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL---------GVAFYR 79 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---------~~~~~~ 79 (206)
.+|+++|.+|+|||||+++|.+..+.....+..+.........+ ..+.+.+|||||....... ......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 37899999999999999999998765433333334443333333 3478999999997421110 001112
Q ss_pred cCcEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654 80 GADCCVLVYDVNVMKSF--DNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 80 ~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
.+|++++|+|+++..++ .....|+..+.... .+.|+++|+||+|+.... .. .....+... ...+++++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~--~~--~~~~~~~~~-~~~~~~~~ 148 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-----KNKPVIVVLNKIDLLTFE--DL--SEIEEEEEL-EGEEVLKI 148 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-----CcCCeEEEEEccccCchh--hH--HHHHHhhhh-ccCceEEE
Confidence 36899999999986543 44456666665432 267999999999997542 11 113344433 34789999
Q ss_pred eccCCCCHHHHHHHHHHHHh
Q 028654 158 SAKEGFNVEAAFECIAKNAL 177 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~~ 177 (206)
||+++.|++++++++.+.++
T Consensus 149 Sa~~~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 149 STLTEEGVDEVKNKACELLL 168 (168)
T ss_pred EecccCCHHHHHHHHHHHhC
Confidence 99999999999999998763
No 124
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.95 E-value=2.7e-26 Score=156.69 Aligned_cols=154 Identities=27% Similarity=0.465 Sum_probs=117.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEEC
Q 028654 11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV 90 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~ 90 (206)
|+++|++|+|||||++++.+..+...+.++.+..... +...+ +.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7899999999999999999998887777776655442 33333 7899999999999988888999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH---HcCCCcEEEeeccCCCCHHH
Q 028654 91 NVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA---SKGNIPYFETSAKEGFNVEA 167 (206)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~i~~ 167 (206)
++..++.....|+..+.... ...+.|+++|+||+|+..... ..+....+.. .....+++++|++++.|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 151 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKP---SLEGIPLLVLGNKNDLPGALS---VDELIEQMNLKSITDREVSCYSISCKEKTNIDI 151 (159)
T ss_pred CCHHHHHHHHHHHHHHHcCh---hhcCCCEEEEEeCccccCCcC---HHHHHHHhCcccccCCceEEEEEEeccCCChHH
Confidence 99888877766666665422 123779999999999875421 1111111110 11236789999999999999
Q ss_pred HHHHHHH
Q 028654 168 AFECIAK 174 (206)
Q Consensus 168 l~~~i~~ 174 (206)
++++|.+
T Consensus 152 l~~~l~~ 158 (159)
T cd04159 152 VLDWLIK 158 (159)
T ss_pred HHHHHhh
Confidence 9999975
No 125
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.94 E-value=7.6e-26 Score=147.42 Aligned_cols=166 Identities=21% Similarity=0.380 Sum_probs=127.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
++++++|+++|..||||||++++|.+.+ .....|+.+ +..++..+.+ +.+.+||.+|+..+++.|..|+...|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4568999999999999999999999887 444455554 4444555544 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecH--HHHHHHHHHcCCCcEEEeeccCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSE--KKAKAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~ 162 (206)
|+|+|.+++..++.....+..+.. .....+.|+++++||.|+.+.-...... -+++++++... ++++.||+.+|
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~---eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~-~~l~~cs~~tg 163 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLV---EERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH-WRLVKCSAVTG 163 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHh---hhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC-ceEEEEecccc
Confidence 999999998777665444444433 3333467999999999998542211111 23344545555 89999999999
Q ss_pred CCHHHHHHHHHHHHhhc
Q 028654 163 FNVEAAFECIAKNALKN 179 (206)
Q Consensus 163 ~~i~~l~~~i~~~~~~~ 179 (206)
+++.+-++|+.+.+.++
T Consensus 164 e~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 164 EDLLEGIDWLCDDLMSR 180 (185)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999999999988873
No 126
>PTZ00099 rab6; Provisional
Probab=99.94 E-value=4.3e-25 Score=152.80 Aligned_cols=145 Identities=34% Similarity=0.579 Sum_probs=124.7
Q ss_pred CCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhc
Q 028654 31 RKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQA 110 (206)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~ 110 (206)
+.|...+.+|.+.++....+.+++..+.+.||||||++.+...+..+++.+|++|+|||++++++++.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 34667788899888888888889999999999999999999999999999999999999999999999999999887653
Q ss_pred CCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654 111 SPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 111 ~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
. ++.|+++|+||+|+... +.+..++...++...+ ..++++||++|.|++++|++|++.+++.+..
T Consensus 83 ~----~~~piilVgNK~DL~~~--~~v~~~e~~~~~~~~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 83 G----KDVIIALVGNKTDLGDL--RKVTYEEGMQKAQEYN-TMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred C----CCCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 2 36799999999999754 4466777777777765 6899999999999999999999999875543
No 127
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=1.4e-25 Score=155.18 Aligned_cols=160 Identities=19% Similarity=0.124 Sum_probs=110.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc----cccccccc---eecCc
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAF---YRGAD 82 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d 82 (206)
+|+++|.+|+|||||+++|.+........+..+.......+.+.+ ...+.+|||||..+ .......+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999987654322223333333333333333 24789999999632 11222222 34599
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccC
Q 028654 83 CCVLVYDVNVM-KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161 (206)
Q Consensus 83 ~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 161 (206)
++++|+|+++. ++++.+..|...+...... ..+.|+++|+||+|+.+.. ...+....+.......+++++|+++
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~--~~~~p~ivv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~ 155 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPE--LLEKPRIVVLNKIDLLDEE---ELFELLKELLKELWGKPVFPISALT 155 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCcc--ccccccEEEEEchhcCCch---hhHHHHHHHHhhCCCCCEEEEecCC
Confidence 99999999998 7888888888877665321 2267999999999987542 2233444444443347899999999
Q ss_pred CCCHHHHHHHHHHH
Q 028654 162 GFNVEAAFECIAKN 175 (206)
Q Consensus 162 ~~~i~~l~~~i~~~ 175 (206)
+.|+++++++|.+.
T Consensus 156 ~~gi~~l~~~i~~~ 169 (170)
T cd01898 156 GEGLDELLRKLAEL 169 (170)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999875
No 128
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=1.9e-25 Score=168.13 Aligned_cols=168 Identities=17% Similarity=0.134 Sum_probs=123.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc-------cccccccceec
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRG 80 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 80 (206)
...|+++|.|+||||||++++.+........+.+|.......+.+.+ ...+.+||+||..+ +...+...+..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 45789999999999999999998765545556666666666665532 24689999999532 11222234567
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (206)
++++++|+|+++.++++.+..|..++..+... ..+.|+++|+||+|+.+. .....+..+.+....+ .+++++||+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~--L~~kp~IIV~NKiDL~~~--~~~~~~~~~~~~~~~~-~~i~~iSAk 311 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPE--LADKPRILVLNKIDLLDE--EEEREKRAALELAALG-GPVFLISAV 311 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhh--cccCCeEEEEECcccCCc--hhHHHHHHHHHHHhcC-CCEEEEEcC
Confidence 99999999999877888888898888765321 126799999999999754 2222333444444443 789999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCC
Q 028654 161 EGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 161 ~~~~i~~l~~~i~~~~~~~~~ 181 (206)
+++|+++++++|.+.+.+.+.
T Consensus 312 tg~GI~eL~~~L~~~l~~~~~ 332 (335)
T PRK12299 312 TGEGLDELLRALWELLEEARR 332 (335)
T ss_pred CCCCHHHHHHHHHHHHHhhhc
Confidence 999999999999998876443
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=1.3e-25 Score=156.54 Aligned_cols=155 Identities=19% Similarity=0.261 Sum_probs=109.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CCCCcccc------cceeeEEEE--EEe---CCeEEEEEEeeCCCccccc
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK-------FSNQYKAT------IGADFLTKE--VQF---EDRLFTLQIWDTAGQERFQ 71 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~-------~~~~~~~~------~~~~~~~~~--~~~---~~~~~~~~i~D~~G~~~~~ 71 (206)
+|+++|.+++|||||+++|++.. +...+.++ .+.+..... ..+ ++..+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 78999999999999999998742 11111111 122222222 222 5567889999999999998
Q ss_pred cccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcC-
Q 028654 72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG- 150 (206)
Q Consensus 72 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~- 150 (206)
..+..++..+|++|+|+|+++..+......|.... . .++|+++|+||+|+.+.. ..+....+....+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~-------~~~~iiiv~NK~Dl~~~~----~~~~~~~~~~~~~~ 149 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E-------NNLEIIPVINKIDLPSAD----PERVKQQIEDVLGL 149 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H-------cCCCEEEEEECCCCCcCC----HHHHHHHHHHHhCC
Confidence 88888999999999999999866655555553322 1 167999999999986431 1222334444433
Q ss_pred -CCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654 151 -NIPYFETSAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 151 -~~~~~~~s~~~~~~i~~l~~~i~~~~ 176 (206)
...++++||++|.|+++++++|.+.+
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 150 DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 13589999999999999999999875
No 130
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.94 E-value=1.1e-25 Score=154.74 Aligned_cols=154 Identities=21% Similarity=0.189 Sum_probs=104.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC---CCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
.|+++|.+|+|||||+++|.+.. +.....++.+.......+.+.+ ...+.+|||||++.+......++..+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 58999999999999999998643 2223334444444444444442 3588999999999887777777889999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc--CCCcEEEeeccC
Q 028654 87 VYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK--GNIPYFETSAKE 161 (206)
Q Consensus 87 v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~ 161 (206)
|+|+++ .++.+.+ ..+ .... ..|+++|+||+|+..........+++..+.... ...+++++|+++
T Consensus 81 V~d~~~~~~~~~~~~~----~~~-~~~~-----~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (164)
T cd04171 81 VVAADEGIMPQTREHL----EIL-ELLG-----IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVT 150 (164)
T ss_pred EEECCCCccHhHHHHH----HHH-HHhC-----CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCC
Confidence 999986 2222222 111 1111 238999999999975321122233444444332 347899999999
Q ss_pred CCCHHHHHHHHHH
Q 028654 162 GFNVEAAFECIAK 174 (206)
Q Consensus 162 ~~~i~~l~~~i~~ 174 (206)
+.|++++++.+.+
T Consensus 151 ~~~v~~l~~~l~~ 163 (164)
T cd04171 151 GEGIEELKEYLDE 163 (164)
T ss_pred CcCHHHHHHHHhh
Confidence 9999999998864
No 131
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=8.8e-26 Score=156.62 Aligned_cols=158 Identities=23% Similarity=0.365 Sum_probs=114.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
....++|+++|++|+|||||++++.+..+. ...++.+.. ...+...+ ..+.+||+||+..+...+..+++.+|++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~--~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFN--IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 345789999999999999999999987653 234444432 23344444 6789999999988888888888999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc----CCCcEEEeecc
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----GNIPYFETSAK 160 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~ 160 (206)
++|+|+++..++.....++..+..... ..++|+++++||+|+.... ..+++....... ...+++++||+
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~----~~~~i~~~l~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEK---LAGVPVLVFANKQDLATAA----PAEEIAEALNLHDLRDRTWHIQACSAK 158 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChh---hcCCCEEEEEECCCCccCC----CHHHHHHHcCCcccCCCeEEEEEeECC
Confidence 999999998888777766666654322 2268999999999986532 122222211111 11357899999
Q ss_pred CCCCHHHHHHHHHH
Q 028654 161 EGFNVEAAFECIAK 174 (206)
Q Consensus 161 ~~~~i~~l~~~i~~ 174 (206)
+|.|++++|+||.+
T Consensus 159 ~~~gi~~~~~~l~~ 172 (173)
T cd04155 159 TGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999975
No 132
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=3.5e-25 Score=163.14 Aligned_cols=145 Identities=28% Similarity=0.519 Sum_probs=120.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC-------------CeEEEEEEeeCCCcccccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-------------DRLFTLQIWDTAGQERFQS 72 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~G~~~~~~ 72 (206)
...+||+++|..|+|||||+++|.++.+...+.++.+.++....+.++ +..+.+.||||+|++.+..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 356899999999999999999999998888888898888777766664 2468899999999999999
Q ss_pred ccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCC--------CCCCCcEEEEeeCCCCCCCCc-ce---ecHH
Q 028654 73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPS--------DPENFPFVVLGNKTDVDGGNS-RV---VSEK 140 (206)
Q Consensus 73 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~pviiv~nK~D~~~~~~-~~---~~~~ 140 (206)
++..+++.++++|+|||+++.++++.+..|+..+....... ...++|++||+||+|+..... +. +..+
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e 178 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD 178 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence 99999999999999999999999999999999998764210 112589999999999975422 12 3678
Q ss_pred HHHHHHHHcC
Q 028654 141 KAKAWCASKG 150 (206)
Q Consensus 141 ~~~~~~~~~~ 150 (206)
+.+.++...+
T Consensus 179 ~a~~~A~~~g 188 (334)
T PLN00023 179 AARQWVEKQG 188 (334)
T ss_pred HHHHHHHHcC
Confidence 8999988765
No 133
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=1.4e-24 Score=148.14 Aligned_cols=158 Identities=25% Similarity=0.536 Sum_probs=124.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
.+||+++|.+|+|||||++++....+...+.++.+.+.....+...+..+.+.+||+||+..+........+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 36999999999999999999999887777777887777777677777678899999999988888888888889999999
Q ss_pred EECCCh-hhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 88 YDVNVM-KSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 88 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|.... .++.... .|...+...... +.|+++++||.|+.... ..+.........+..+++++||+++.|+
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~----~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~sa~~~~gv 152 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAES----NVPIILVGNKIDLRDAK----LKTHVAFLFAKLNGEPIIPLSAETGKNI 152 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhccc----CCcEEEEEEcccCCcch----hhHHHHHHHhhccCCceEEeecCCCCCH
Confidence 998775 5555543 666666555432 67999999999997542 2333333444444578999999999999
Q ss_pred HHHHHHHH
Q 028654 166 EAAFECIA 173 (206)
Q Consensus 166 ~~l~~~i~ 173 (206)
.+++++|.
T Consensus 153 ~~~~~~l~ 160 (161)
T TIGR00231 153 DSAFKIVE 160 (161)
T ss_pred HHHHHHhh
Confidence 99999874
No 134
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.93 E-value=5.9e-25 Score=162.25 Aligned_cols=159 Identities=19% Similarity=0.093 Sum_probs=109.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc--------ccccceec
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRG 80 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~ 80 (206)
+|+++|.+|+|||||+|+|.+..+. ....+.++...........+ .++.||||||...... ....++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 5899999999999999999998754 23333333333222222222 4789999999643211 12345688
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (206)
+|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+... ....+....+....+..+++++||+
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~-------~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~~~~~~~v~~iSA~ 147 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN-------LKRPVVLTRNKLDNKFK---DKLLPLIDKYAILEDFKDIVPISAL 147 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh-------cCCCEEEEEECeeCCCH---HHHHHHHHHHHhhcCCCceEEEecC
Confidence 99999999999865543 233333322 16799999999999742 2223344444444444589999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCC
Q 028654 161 EGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 161 ~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
+|.|+++++++|.+.+++.++.
T Consensus 148 ~g~gi~~L~~~l~~~l~~~~~~ 169 (270)
T TIGR00436 148 TGDNTSFLAAFIEVHLPEGPFR 169 (270)
T ss_pred CCCCHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999887764
No 135
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=6.2e-25 Score=156.25 Aligned_cols=158 Identities=18% Similarity=0.183 Sum_probs=109.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc-ccc-------cccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-QSL-------GVAF 77 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~-------~~~~ 77 (206)
...++|+++|++|||||||++++.+..+.....+..+.......+.+.+. ..+.+|||||.... ... ....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 44689999999999999999999988654333333334444444444442 37889999996321 110 1122
Q ss_pred eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
+..+|++++|+|++++.+......|...+..... .+.|+++|+||+|+.+... . . ..... ...+++++
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~----~~~~viiV~NK~Dl~~~~~--~--~---~~~~~-~~~~~~~~ 185 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGA----EDIPMILVLNKIDLLDDEE--L--E---ERLEA-GRPDAVFI 185 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc----CCCCEEEEEEccccCChHH--H--H---HHhhc-CCCceEEE
Confidence 5679999999999988877776666665543321 2679999999999976421 1 1 22222 34789999
Q ss_pred eccCCCCHHHHHHHHHHHH
Q 028654 158 SAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~ 176 (206)
||+++.|+++++++|.+.+
T Consensus 186 Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 186 SAKTGEGLDELLEAIEELL 204 (204)
T ss_pred EcCCCCCHHHHHHHHHhhC
Confidence 9999999999999998753
No 136
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=2e-25 Score=149.20 Aligned_cols=148 Identities=18% Similarity=0.264 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc------cccccce--ec
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFY--RG 80 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~--~~ 80 (206)
++|+++|.||+|||||+|+|++........|++|.+.....+.+.+ ..+.++|+||...+. .....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999987666778888888777787777 677889999932222 1222333 57
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (206)
.|++++|+|+++.+.-. ++..++... ++|+++++||+|...........+.+. +..+ ++++++||.
T Consensus 79 ~D~ii~VvDa~~l~r~l---~l~~ql~e~-------g~P~vvvlN~~D~a~~~g~~id~~~Ls---~~Lg-~pvi~~sa~ 144 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL---YLTLQLLEL-------GIPVVVVLNKMDEAERKGIEIDAEKLS---ERLG-VPVIPVSAR 144 (156)
T ss_dssp SSEEEEEEEGGGHHHHH---HHHHHHHHT-------TSSEEEEEETHHHHHHTTEEE-HHHHH---HHHT-S-EEEEBTT
T ss_pred CCEEEEECCCCCHHHHH---HHHHHHHHc-------CCCEEEEEeCHHHHHHcCCEECHHHHH---HHhC-CCEEEEEeC
Confidence 99999999998744222 233333322 789999999999887654555444444 4455 899999999
Q ss_pred CCCCHHHHHHHH
Q 028654 161 EGFNVEAAFECI 172 (206)
Q Consensus 161 ~~~~i~~l~~~i 172 (206)
++.|++++++.|
T Consensus 145 ~~~g~~~L~~~I 156 (156)
T PF02421_consen 145 TGEGIDELKDAI 156 (156)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHhhC
Confidence 999999999875
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=2.8e-25 Score=149.24 Aligned_cols=135 Identities=26% Similarity=0.341 Sum_probs=97.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc-----ccccccccceecCcEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-----RFQSLGVAFYRGADCC 84 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~v 84 (206)
||+++|++|+|||||+++|.+..+. +.++.+ +.+.. .+|||||.. .+.... ..++.+|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYND-----GAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 7999999999999999999887642 222221 11221 589999972 233322 347899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|+|++++.++.. ..|...+ ..|+++|+||+|+.+ .....+....++...+..+++++||+++.|
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~----------~~p~ilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 132 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF----------VKPVIGLVTKIDLAE---ADVDIERAKELLETAGAEPIFEISSVDEQG 132 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc----------cCCeEEEEEeeccCC---cccCHHHHHHHHHHcCCCcEEEEecCCCCC
Confidence 99999999887654 2333211 238999999999864 234456667777666645899999999999
Q ss_pred HHHHHHHHH
Q 028654 165 VEAAFECIA 173 (206)
Q Consensus 165 i~~l~~~i~ 173 (206)
++++|+++.
T Consensus 133 i~~l~~~l~ 141 (142)
T TIGR02528 133 LEALVDYLN 141 (142)
T ss_pred HHHHHHHHh
Confidence 999999874
No 138
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.93 E-value=9e-27 Score=154.01 Aligned_cols=168 Identities=30% Similarity=0.537 Sum_probs=154.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
.-++++++|..++||||++.+++.+-|...+..+.+.++....+.+.+..+.+.+||++|+++++.....|++.+.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 36899999999999999999999999999999999999988888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
||+.++..+|+.+..|...+..... .+|.++|-||+|+.++ .+...++.+-+++... ..++.+|+++..|+.
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~~-----~IPtV~vqNKIDlved--s~~~~~evE~lak~l~-~RlyRtSvked~NV~ 170 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKETE-----RIPTVFVQNKIDLVED--SQMDKGEVEGLAKKLH-KRLYRTSVKEDFNVM 170 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHhc-----cCCeEEeeccchhhHh--hhcchHHHHHHHHHhh-hhhhhhhhhhhhhhH
Confidence 9999999999999999999987765 8899999999999987 6788888888888887 889999999999999
Q ss_pred HHHHHHHHHHhhcCCC
Q 028654 167 AAFECIAKNALKNEPQ 182 (206)
Q Consensus 167 ~l~~~i~~~~~~~~~~ 182 (206)
.+|..+++.+.++..+
T Consensus 171 ~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 171 HVFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988765544
No 139
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=4.7e-24 Score=161.60 Aligned_cols=164 Identities=24% Similarity=0.300 Sum_probs=112.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc-cccc-------cc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-QSLG-------VA 76 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~-------~~ 76 (206)
...++|+++|.+|+|||||+|+|.+..+.. ...+.++.......+...+ .++.||||||..+. .... ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 456799999999999999999999887642 2233333344444445544 57899999997432 2111 12
Q ss_pred ceecCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcC-CCcE
Q 028654 77 FYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-NIPY 154 (206)
Q Consensus 77 ~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~ 154 (206)
.+..+|++++|+|..+ ++.... .|+..+... +.|+++|+||+|+... ..+++..+..... ...+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~-------~~p~IlViNKiDl~~~-----~~~~~~~~l~~~~~~~~i 193 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL-------NIVPIFLLNKIDIESK-----YLNDIKAFLTENHPDSLL 193 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc-------CCCEEEEEEhhcCccc-----cHHHHHHHHHhcCCCcEE
Confidence 4678999999999765 333332 333333221 4578899999998642 1344444444332 4679
Q ss_pred EEeeccCCCCHHHHHHHHHHHHhhcCCCCCC
Q 028654 155 FETSAKEGFNVEAAFECIAKNALKNEPQEED 185 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~~~~~~~~~~~ 185 (206)
+++||++|.|+++++++|.+.+++.++..++
T Consensus 194 ~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~ 224 (339)
T PRK15494 194 FPISALSGKNIDGLLEYITSKAKISPWLYAE 224 (339)
T ss_pred EEEeccCccCHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999999988887444
No 140
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.93 E-value=2.6e-24 Score=148.47 Aligned_cols=159 Identities=22% Similarity=0.220 Sum_probs=109.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC-CeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
.|+++|.+|+|||||+++|....+.....++.+.+.....+... .....+.+|||||+..+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999887765544444444433444433 13568899999999888887788889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH-----cCCCcEEEeeccCCC
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-----KGNIPYFETSAKEGF 163 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~ 163 (206)
|+++........ .+..+.. .+.|+++|+||+|+...... ...+....+... ....+++++|++++.
T Consensus 82 d~~~~~~~~~~~-~~~~~~~-------~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA-------ANVPFIVALNKIDKPNANPE-RVKNELSELGLQGEDEWGGDVQIVPTSAKTGE 152 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH-------cCCCEEEEEEceecccccHH-HHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence 998743222211 1122211 16799999999998753211 111122222111 123689999999999
Q ss_pred CHHHHHHHHHHHHh
Q 028654 164 NVEAAFECIAKNAL 177 (206)
Q Consensus 164 ~i~~l~~~i~~~~~ 177 (206)
|+++++++|.+...
T Consensus 153 gi~~l~~~l~~~~~ 166 (168)
T cd01887 153 GIDDLLEAILLLAE 166 (168)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999988654
No 141
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=4.6e-24 Score=145.75 Aligned_cols=148 Identities=20% Similarity=0.241 Sum_probs=107.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc------cccce--ecCcEE
Q 028654 13 ILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY--RGADCC 84 (206)
Q Consensus 13 viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~v 84 (206)
++|.+|+|||||++++.+..+.....++++.......+.+.+ ..+.+|||||+..+... ...++ +.+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 579999999999999998865555556666666666666665 57899999998765532 34444 489999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|+|+++.+... .+...+... +.|+++|+||+|+..... . ......+....+ .+++++|+.++.|
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~~-------~~~~iiv~NK~Dl~~~~~--~-~~~~~~~~~~~~-~~~~~iSa~~~~~ 144 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLEL-------GLPVVVALNMIDEAEKRG--I-KIDLDKLSELLG-VPVVPTSARKGEG 144 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHHc-------CCCEEEEEehhhhccccc--c-hhhHHHHHHhhC-CCeEEEEccCCCC
Confidence 9999998754422 333333221 679999999999976421 2 223345555555 7899999999999
Q ss_pred HHHHHHHHHHHH
Q 028654 165 VEAAFECIAKNA 176 (206)
Q Consensus 165 i~~l~~~i~~~~ 176 (206)
++++++++.+.+
T Consensus 145 ~~~l~~~l~~~~ 156 (158)
T cd01879 145 IDELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHHh
Confidence 999999998863
No 142
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.92 E-value=2.4e-25 Score=142.50 Aligned_cols=163 Identities=23% Similarity=0.394 Sum_probs=127.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
+..+.++|..+||||||+|.+..+.+...-.|+.+.... .++...+.+.+||.||+..++.++..|.+.+++++||
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 467889999999999999999998888877888775443 4555668999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (206)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (206)
+|+++++.++....-++.++.... ..++|+++.+||.|++++-......++.-...-....+.++.+|+++..+++-
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~---l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPS---LTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchh---hcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence 999998887766554454443332 33889999999999988643333332222222223347799999999999999
Q ss_pred HHHHHHHHHh
Q 028654 168 AFECIAKNAL 177 (206)
Q Consensus 168 l~~~i~~~~~ 177 (206)
+.+||++...
T Consensus 173 ~~~Wli~hsk 182 (186)
T KOG0075|consen 173 TLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHhh
Confidence 9999998654
No 143
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.92 E-value=2.3e-24 Score=151.84 Aligned_cols=162 Identities=19% Similarity=0.101 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC----CCC---CCcccccceeeEEEEEEeC------------CeEEEEEEeeCCCccc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR----KFS---NQYKATIGADFLTKEVQFE------------DRLFTLQIWDTAGQER 69 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~----~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~ 69 (206)
++|+++|++++|||||+++|++. .+. ....++.+.........+. +....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999873 111 2222333333333333332 2357889999999876
Q ss_pred cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH-H
Q 028654 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-S 148 (206)
Q Consensus 70 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~-~ 148 (206)
+........+.+|++++|+|+++.........+. +.... +.|+++|+||+|+..........+++..... .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~ 152 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL------CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc------CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence 6554445566789999999998744333322221 11111 5699999999999754222222333332211 1
Q ss_pred -----cCCCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654 149 -----KGNIPYFETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 149 -----~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
...++++++||+++.|++++++++.+.++.
T Consensus 153 ~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 153 LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 234789999999999999999999988764
No 144
>COG1159 Era GTPase [General function prediction only]
Probab=99.92 E-value=2.6e-24 Score=154.56 Aligned_cols=168 Identities=19% Similarity=0.102 Sum_probs=117.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc--------cccccccce
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFY 78 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 78 (206)
..--|+++|.||+|||||+|++.+....-......|+......+... ...++.|+||||-.. +.......+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 45578999999999999999999998773333333333333333222 357999999999322 223334567
Q ss_pred ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654 79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (206)
Q Consensus 79 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (206)
+.+|+++||+|++..-.. ...+..+..+. .+.|+++++||+|..... .........+........++++|
T Consensus 84 ~dvDlilfvvd~~~~~~~--~d~~il~~lk~------~~~pvil~iNKID~~~~~--~~l~~~~~~~~~~~~f~~ivpiS 153 (298)
T COG1159 84 KDVDLILFVVDADEGWGP--GDEFILEQLKK------TKTPVILVVNKIDKVKPK--TVLLKLIAFLKKLLPFKEIVPIS 153 (298)
T ss_pred ccCcEEEEEEeccccCCc--cHHHHHHHHhh------cCCCeEEEEEccccCCcH--HHHHHHHHHHHhhCCcceEEEee
Confidence 889999999999863322 22332222222 167999999999998752 22234444555556667999999
Q ss_pred ccCCCCHHHHHHHHHHHHhhcCCCCCC
Q 028654 159 AKEGFNVEAAFECIAKNALKNEPQEED 185 (206)
Q Consensus 159 ~~~~~~i~~l~~~i~~~~~~~~~~~~~ 185 (206)
|++|.|++.|.+.+...+++.++..++
T Consensus 154 A~~g~n~~~L~~~i~~~Lpeg~~~yp~ 180 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYLPEGPWYYPE 180 (298)
T ss_pred ccccCCHHHHHHHHHHhCCCCCCcCCh
Confidence 999999999999999999999888443
No 145
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=9.2e-24 Score=158.88 Aligned_cols=162 Identities=19% Similarity=0.150 Sum_probs=116.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc----cccccc---eec
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----SLGVAF---YRG 80 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~~---~~~ 80 (206)
...|+++|.+++|||||++++.+........+.++.......+.+.+ ...+.+||+||..+.. .+...+ +..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 45789999999999999999998765444445555555555555543 3578999999964321 222233 456
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654 81 ADCCVLVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 81 ~d~vi~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
++++++|+|+++. ++++.+..|..++..+... ..+.|+++|+||+|+.+. ....+..+.+....+ .+++++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~--l~~kp~IIV~NK~DL~~~---~~~~~~~~~l~~~~~-~~vi~i 309 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPE--LAEKPRIVVLNKIDLLDE---EELAELLKELKKALG-KPVFPI 309 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhh--hccCCEEEEEeCccCCCh---HHHHHHHHHHHHHcC-CcEEEE
Confidence 9999999999976 6777778887777655321 126799999999999754 122334444554444 789999
Q ss_pred eccCCCCHHHHHHHHHHHH
Q 028654 158 SAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~ 176 (206)
||++++|+++++++|.+.+
T Consensus 310 SAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 310 SALTGEGLDELLYALAELL 328 (329)
T ss_pred EccCCcCHHHHHHHHHHHh
Confidence 9999999999999998754
No 146
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=2.4e-23 Score=149.64 Aligned_cols=171 Identities=35% Similarity=0.523 Sum_probs=134.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..+||+++|++|+|||||+++|.+..+...+.++.+..+........+..+.+.+|||+|+++++..+..++..++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999999988888887776666666555557889999999999999999999999999999
Q ss_pred EEECCC-hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcc----------eecHHHHHHHHHHc--CCCc
Q 028654 87 VYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR----------VVSEKKAKAWCASK--GNIP 153 (206)
Q Consensus 87 v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~----------~~~~~~~~~~~~~~--~~~~ 153 (206)
++|..+ ....+....|...+..... .+.|+++|+||+|+...... ....+......... ....
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~----~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAP----DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPA 159 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCC----CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccc
Confidence 999998 5555666888888876653 26799999999999875321 12222222222222 2234
Q ss_pred EEEeecc--CCCCHHHHHHHHHHHHhhcCC
Q 028654 154 YFETSAK--EGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 154 ~~~~s~~--~~~~i~~l~~~i~~~~~~~~~ 181 (206)
++.+|++ .+.++.++|..+...+.+...
T Consensus 160 ~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 160 LLETSAKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred eeEeecccCCCcCHHHHHHHHHHHHHHhhh
Confidence 8999999 999999999999998875443
No 147
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=6.4e-24 Score=149.82 Aligned_cols=162 Identities=17% Similarity=0.168 Sum_probs=106.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--CCCCCCc------------ccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN--RKFSNQY------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG 74 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 74 (206)
.+|+++|.+++|||||+++|+. ..+.... ..+.+.+.......+......+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999997 3433221 1122333333333444455789999999999999888
Q ss_pred ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc-----
Q 028654 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----- 149 (206)
Q Consensus 75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~----- 149 (206)
..+++.+|++++|+|+++.. ......++..+.. .++|+++|+||+|+.... .....+++..+....
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~-------~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 153 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE-------LGLKPIVVINKIDRPDAR-PEEVVDEVFDLFIELGATEE 153 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH-------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHHhCCccc
Confidence 99999999999999998732 1222233332221 167999999999997532 112233444443221
Q ss_pred -CCCcEEEeeccCCCCHHHH------HHHHHHHHhhc
Q 028654 150 -GNIPYFETSAKEGFNVEAA------FECIAKNALKN 179 (206)
Q Consensus 150 -~~~~~~~~s~~~~~~i~~l------~~~i~~~~~~~ 179 (206)
...+++++||++|.|+.++ ++++++.+.+.
T Consensus 154 ~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~ 190 (194)
T cd01891 154 QLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEH 190 (194)
T ss_pred cCccCEEEeehhccccccccccchhhHHHHHHHHHhc
Confidence 1478999999999776432 44444444443
No 148
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=2.8e-23 Score=140.58 Aligned_cols=156 Identities=47% Similarity=0.789 Sum_probs=116.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECC
Q 028654 13 ILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN 91 (206)
Q Consensus 13 viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~ 91 (206)
++|++|+|||||++++.+... .....++. ................+.+||+||...+.......++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 579999999999999998876 34444444 6666666666677789999999998888777788889999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHH
Q 028654 92 VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC 171 (206)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~ 171 (206)
++.+......|........ ...+.|+++|+||+|+..... ................+++++|+.++.|+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~---~~~~~~~ivv~nk~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 154 (157)
T cd00882 80 DRESFENVKEWLLLILINK---EGENIPIILVGNKIDLPEERV--VSEEELAEQLAKELGVPYFETSAKTGENVEELFEE 154 (157)
T ss_pred CHHHHHHHHHHHHHHHHhh---ccCCCcEEEEEeccccccccc--hHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHH
Confidence 9888887776632222211 223789999999999876422 11111122333444589999999999999999999
Q ss_pred HHH
Q 028654 172 IAK 174 (206)
Q Consensus 172 i~~ 174 (206)
|.+
T Consensus 155 l~~ 157 (157)
T cd00882 155 LAE 157 (157)
T ss_pred HhC
Confidence 863
No 149
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.2e-24 Score=142.36 Aligned_cols=166 Identities=19% Similarity=0.332 Sum_probs=127.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
..+.+|+++|-.++||||++.+|-...+... .||.+...... .+. ++.+++||.+|++.++..+..|+++.+++|
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v--~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETV--EYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEE--EEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 4578999999999999999999877765443 66666555443 444 589999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
||+|.++++.+..+..-+..+. ......+.|+++.+||.|++++....+..+.+.........+.+..++|.+|+|+
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l---~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRML---AEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHH---cCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence 9999999988877665545444 3444558899999999999987443332222222222223477888999999999
Q ss_pred HHHHHHHHHHHhhc
Q 028654 166 EAAFECIAKNALKN 179 (206)
Q Consensus 166 ~~l~~~i~~~~~~~ 179 (206)
.+.++|+.+.+...
T Consensus 167 ~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 167 YEGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987653
No 150
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.92 E-value=9e-24 Score=148.43 Aligned_cols=158 Identities=22% Similarity=0.150 Sum_probs=111.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCccc----------------ccceeeEEEEEEeCCeEEEEEEeeCCCccccccc
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKA----------------TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL 73 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 73 (206)
+|+++|.+|+|||||+++|.+......... +.+........... ...+.+|||||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 489999999999999999998766543311 12222222222333 468899999999888888
Q ss_pred cccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc----
Q 028654 74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK---- 149 (206)
Q Consensus 74 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~---- 149 (206)
+..++..+|++++|+|+++...... ..++..+.. .+.|+++|+||+|+..........+.+.......
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~-------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE-------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIS 150 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH-------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccc
Confidence 8888899999999999987654332 233333322 2679999999999986322233333444333321
Q ss_pred ---------CCCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654 150 ---------GNIPYFETSAKEGFNVEAAFECIAKNAL 177 (206)
Q Consensus 150 ---------~~~~~~~~s~~~~~~i~~l~~~i~~~~~ 177 (206)
...+++++|++++.|+++++++|.+.++
T Consensus 151 ~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 151 TKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2478999999999999999999999864
No 151
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=2e-23 Score=158.35 Aligned_cols=154 Identities=20% Similarity=0.200 Sum_probs=110.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc---------ccccccccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGVAF 77 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~ 77 (206)
..++|+++|.+|+|||||+|+|++........++++.+.....+.+.+. ..+.+|||+|.. .+.. ....
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~-tle~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRA-TLEE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHH-HHHH
Confidence 4589999999999999999999998754444555566666777766432 478899999962 1222 1224
Q ss_pred eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
+..+|++++|+|++++.+......|...+.... ..+.|+++|+||+|+... . ....... ...+++++
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~----~~~~piIlV~NK~Dl~~~--~-----~v~~~~~--~~~~~i~i 332 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELG----AEDIPQLLVYNKIDLLDE--P-----RIERLEE--GYPEAVFV 332 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc----cCCCCEEEEEEeecCCCh--H-----hHHHHHh--CCCCEEEE
Confidence 678999999999999887776665555444332 126799999999999642 1 1111111 12468999
Q ss_pred eccCCCCHHHHHHHHHHH
Q 028654 158 SAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~ 175 (206)
||+++.|+++++++|.+.
T Consensus 333 SAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 333 SAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EccCCCCHHHHHHHHHhh
Confidence 999999999999998764
No 152
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.91 E-value=1.7e-23 Score=168.13 Aligned_cols=181 Identities=20% Similarity=0.200 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+.|+++|+.++|||||+++|.+.. +..+..++.+.+.....+.+.+ ..+.+||+||++.|...+...+..+|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 368999999999999999999743 3344455666666555566655 78899999999999888888899999999
Q ss_pred EEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcceecHHHHHHHHHHcC---CCcEEEee
Q 028654 86 LVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVVSEKKAKAWCASKG---NIPYFETS 158 (206)
Q Consensus 86 ~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s 158 (206)
+|+|+++. .+.+.+ ..+ ... ++| +++|+||+|+.+........+++..+....+ +.+++++|
T Consensus 79 LVVDa~~G~~~qT~ehl----~il-~~l------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vS 147 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVL-DLL------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTS 147 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHH-HHc------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence 99999873 333332 111 111 567 9999999999764222223445555555432 47899999
Q ss_pred ccCCCCHHHHHHHHHHHHhhcCCCCCCCCCccccCCCCCccCCCC
Q 028654 159 AKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSG 203 (206)
Q Consensus 159 ~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (206)
+++|.|+++++..|.+.+....+.. ...|-.+.+...++.++.|
T Consensus 148 A~tG~GI~eL~~~L~~l~~~~~~~~-~~~p~r~~Id~~f~v~G~G 191 (581)
T TIGR00475 148 AKTGQGIGELKKELKNLLESLDIKR-IQKPLRMAIDRAFKVKGAG 191 (581)
T ss_pred CCCCCCchhHHHHHHHHHHhCCCcC-cCCCcEEEEEEEEecCCcE
Confidence 9999999999999988765544322 2233334444444444444
No 153
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=2.3e-23 Score=147.81 Aligned_cols=158 Identities=20% Similarity=0.232 Sum_probs=102.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCC-----------ccccccc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------QERFQSL 73 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~ 73 (206)
+...++|+++|.+|+|||||+|+|.+..+.....++.+.. ...+.+. .+.+||||| ++.+...
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence 3456899999999999999999999887655555544333 2233222 588999999 3444444
Q ss_pred cccce----ecCcEEEEEEECCChhhHHHHHHHH--------HHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHH
Q 028654 74 GVAFY----RGADCCVLVYDVNVMKSFDNLNNWR--------EEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKK 141 (206)
Q Consensus 74 ~~~~~----~~~d~vi~v~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~ 141 (206)
+..++ ..++++++|+|.++...+. ..|. ..+...... .+.|+++|+||+|+.+.. .+.
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~-----~~~ 149 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR-----DEV 149 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH-----HHH
Confidence 44443 3467889999986532210 1110 011111111 178999999999997542 233
Q ss_pred HHHHHHHcCC--------CcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654 142 AKAWCASKGN--------IPYFETSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 142 ~~~~~~~~~~--------~~~~~~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
...+....+. .+++++||++| |+++++++|.+.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 150 LDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred HHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 3444444331 25899999999 9999999999987543
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=2.8e-23 Score=164.18 Aligned_cols=161 Identities=23% Similarity=0.210 Sum_probs=113.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc----------ccccc-
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLG- 74 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~- 74 (206)
..++|+++|.+|+|||||+|+|++..+. ....++++.+.....+.+++. .+.+|||||... +....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999988653 445566666666666667664 457999999522 21111
Q ss_pred ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcE
Q 028654 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY 154 (206)
Q Consensus 75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
..+++.+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+.+........+++..........++
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~-------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 359 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE-------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPR 359 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCE
Confidence 23568899999999999887776653 3333322 277999999999997532212222223222222334789
Q ss_pred EEeeccCCCCHHHHHHHHHHHHh
Q 028654 155 FETSAKEGFNVEAAFECIAKNAL 177 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~~~ 177 (206)
+++||++|.|++++|+.+.+.+.
T Consensus 360 ~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 360 VNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 155
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=5.6e-23 Score=157.61 Aligned_cols=168 Identities=17% Similarity=0.060 Sum_probs=120.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc-------ccccccceecC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRGA 81 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~ 81 (206)
..|+++|.||+|||||+|+|++........+.+|.......+.+.+ ...+.|+||||..+- .......+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 4789999999999999999998765555566666666666665543 235889999995431 11222346789
Q ss_pred cEEEEEEECC---ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC-CcEEEe
Q 028654 82 DCCVLVYDVN---VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFET 157 (206)
Q Consensus 82 d~vi~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 157 (206)
+++++|+|++ ..+.++....|+.++..+... ..+.|+++|+||+|+... ....+.+..+....+. .+++++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~--L~~kP~IlVlNKiDl~~~---~el~~~l~~l~~~~~~~~~Vi~I 313 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPK--LAEKPRWLVFNKIDLLDE---EEAEERAKAIVEALGWEGPVYLI 313 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhh--hcCCCEEEEEeCCccCCh---HHHHHHHHHHHHHhCCCCCEEEE
Confidence 9999999988 445666667777777654321 125799999999998653 2223444445444332 378999
Q ss_pred eccCCCCHHHHHHHHHHHHhhcCCC
Q 028654 158 SAKEGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
||+++.|+++++++|.+.+.+.++.
T Consensus 314 SA~tg~GIdeLl~~I~~~L~~~~~~ 338 (390)
T PRK12298 314 SAASGLGVKELCWDLMTFIEENPRE 338 (390)
T ss_pred ECCCCcCHHHHHHHHHHHhhhCccc
Confidence 9999999999999999999887664
No 156
>PRK00089 era GTPase Era; Reviewed
Probab=99.91 E-value=6.1e-23 Score=153.48 Aligned_cols=163 Identities=20% Similarity=0.142 Sum_probs=109.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc--------cccccce
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAFY 78 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~ 78 (206)
.-.|+++|++|||||||+|+|++..+.. ...+.++.......... ...++.++||||..... ......+
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~--~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE--DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc--CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 4568999999999999999999887642 22232222222222222 23689999999954322 2233456
Q ss_pred ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654 79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (206)
Q Consensus 79 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (206)
..+|++++|+|+++.... ....+...+. . .+.|+++|+||+|+... .....+....+....+..+++++|
T Consensus 83 ~~~D~il~vvd~~~~~~~-~~~~i~~~l~----~---~~~pvilVlNKiDl~~~--~~~l~~~~~~l~~~~~~~~i~~iS 152 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGP-GDEFILEKLK----K---VKTPVILVLNKIDLVKD--KEELLPLLEELSELMDFAEIVPIS 152 (292)
T ss_pred hcCCEEEEEEeCCCCCCh-hHHHHHHHHh----h---cCCCEEEEEECCcCCCC--HHHHHHHHHHHHhhCCCCeEEEec
Confidence 789999999999873221 1122222222 1 16799999999999743 233444555555555567899999
Q ss_pred ccCCCCHHHHHHHHHHHHhhcCCC
Q 028654 159 AKEGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 159 ~~~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
|+++.|+++++++|.+.+++.++.
T Consensus 153 A~~~~gv~~L~~~L~~~l~~~~~~ 176 (292)
T PRK00089 153 ALKGDNVDELLDVIAKYLPEGPPY 176 (292)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCC
Confidence 999999999999999998876654
No 157
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=6.1e-23 Score=162.25 Aligned_cols=155 Identities=21% Similarity=0.270 Sum_probs=109.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc--------cccccccce
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFY 78 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 78 (206)
..+|+++|.+|+|||||+|+|++.... ....++.+.+.......+.+ ..+.+|||||.+. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 468999999999999999999987643 34455555555555555555 4578999999652 233345567
Q ss_pred ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654 79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (206)
Q Consensus 79 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (206)
+.+|++|+|+|+++..+... ..+...+.. .+.|+++|+||+|+.... .+..+.+. .+...++++|
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-------~~~piilV~NK~Dl~~~~-----~~~~~~~~--~g~~~~~~iS 180 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR-------SGKPVILAANKVDDERGE-----ADAAALWS--LGLGEPHPVS 180 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECccCCccc-----hhhHHHHh--cCCCCeEEEE
Confidence 89999999999998655433 233333322 178999999999986421 11222222 2223457999
Q ss_pred ccCCCCHHHHHHHHHHHHhhc
Q 028654 159 AKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 159 ~~~~~~i~~l~~~i~~~~~~~ 179 (206)
|++|.|+++++++|++.+.+.
T Consensus 181 A~~g~gi~eL~~~i~~~l~~~ 201 (472)
T PRK03003 181 ALHGRGVGDLLDAVLAALPEV 201 (472)
T ss_pred cCCCCCcHHHHHHHHhhcccc
Confidence 999999999999999988663
No 158
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.91 E-value=1.2e-22 Score=138.55 Aligned_cols=146 Identities=24% Similarity=0.304 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc--------ccccee
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAFYR 79 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~ 79 (206)
++|+++|++|+|||||++++.+.... ....++++.......+...+ ..+.+|||||..++... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987643 22334444444444444443 57889999996554322 224567
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeec
Q 028654 80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA 159 (206)
Q Consensus 80 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (206)
.+|++++|+|++++.+......+.. ..+.|+++|+||+|+...... . ......+++++|+
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~----------~~~~~vi~v~nK~D~~~~~~~---------~-~~~~~~~~~~~Sa 139 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL----------PADKPIIVVLNKSDLLPDSEL---------L-SLLAGKPIIAISA 139 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh----------hcCCCEEEEEEchhcCCcccc---------c-cccCCCceEEEEC
Confidence 8999999999998776665443322 126799999999999764221 1 2223478999999
Q ss_pred cCCCCHHHHHHHHHHHH
Q 028654 160 KEGFNVEAAFECIAKNA 176 (206)
Q Consensus 160 ~~~~~i~~l~~~i~~~~ 176 (206)
+++.|+++++++|.+.+
T Consensus 140 ~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 140 KTGEGLDELKEALLELA 156 (157)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999998754
No 159
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1.4e-22 Score=158.13 Aligned_cols=167 Identities=19% Similarity=0.118 Sum_probs=116.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc-------cccccceec
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFYRG 80 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~ 80 (206)
...|+++|.+|+|||||+|+|.+........+.+|.......+.+.+ ..+.+||+||..... ......+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 46899999999999999999998765544556666666666666655 578999999943211 112234567
Q ss_pred CcEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCC-------CCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc
Q 028654 81 ADCCVLVYDVNVM----KSFDNLNNWREEFLIQASPS-------DPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK 149 (206)
Q Consensus 81 ~d~vi~v~d~~~~----~~~~~~~~~~~~~~~~~~~~-------~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 149 (206)
+|++++|+|+++. +.+..+..+..++..+.... ...+.|+++|+||+|+.+. . ...+.+.......
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~-el~e~l~~~l~~~ 313 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--R-ELAEFVRPELEAR 313 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--H-HHHHHHHHHHHHc
Confidence 9999999999853 34555556666665543210 1236799999999999753 1 1222333333333
Q ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654 150 GNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 150 ~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
+ ++++++||+++.|+++++.+|.+.+.+.+
T Consensus 314 g-~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 314 G-WPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred C-CeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 3 78999999999999999999999876654
No 160
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.91 E-value=4.2e-23 Score=146.41 Aligned_cols=164 Identities=14% Similarity=0.144 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC---CCCcccccceeeEEEEEEeC---------------------------C----
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKF---SNQYKATIGADFLTKEVQFE---------------------------D---- 54 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 54 (206)
++|+++|+.|+|||||+.++.+... ........+.........+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4789999999999999999976421 11111111111111111110 0
Q ss_pred eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc
Q 028654 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS 134 (206)
Q Consensus 55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~ 134 (206)
....+.||||||++.+...+...+..+|++++|+|++++.........+..+. ... ..|+++|+||+|+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~-~~~-----~~~iiivvNK~Dl~~~~~ 154 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALE-IMG-----LKHIIIVQNKIDLVKEEQ 154 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHH-HcC-----CCcEEEEEEchhccCHHH
Confidence 12678999999999888888888889999999999986311111111112221 111 237999999999975322
Q ss_pred ceecHHHHHHHHHHc--CCCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654 135 RVVSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 135 ~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
.....+.+..+.... ...+++++||+++.|+++++++|.+.+++
T Consensus 155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 222233444444332 24789999999999999999999987765
No 161
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=2.5e-22 Score=154.87 Aligned_cols=163 Identities=19% Similarity=0.165 Sum_probs=117.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc----ccccccc---eecC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSLGVAF---YRGA 81 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~ 81 (206)
..|+++|.+++|||||++++++........+.+|.......+.+.. ...+.+||+||..+. ..+...+ +..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 4889999999999999999998765444455555555555555441 357899999995321 1222333 4568
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654 82 DCCVLVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (206)
Q Consensus 82 d~vi~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (206)
+++++|+|+++. ++++....|..++..+... ..++|++||+||+|+... .+.++.+....+ .+++++|
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~--L~~kP~IVV~NK~DL~~~------~e~l~~l~~~l~-~~i~~iS 308 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPR--LLERPQIVVANKMDLPEA------EENLEEFKEKLG-PKVFPIS 308 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchh--ccCCcEEEEEeCCCCcCC------HHHHHHHHHHhC-CcEEEEe
Confidence 999999999864 5667777777777665321 226799999999998432 234455555555 7899999
Q ss_pred ccCCCCHHHHHHHHHHHHhhcCC
Q 028654 159 AKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 159 ~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
|+++.|+++++++|.+.+.+.++
T Consensus 309 A~tgeGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 309 ALTGQGLDELLYAVAELLEETPE 331 (424)
T ss_pred CCCCCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999998876654
No 162
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.90 E-value=1.4e-22 Score=163.03 Aligned_cols=161 Identities=18% Similarity=0.228 Sum_probs=114.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC-------CCCccc------ccceeeEEE--EEEe---CCeEEEEEEeeCCCccc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKF-------SNQYKA------TIGADFLTK--EVQF---EDRLFTLQIWDTAGQER 69 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~-------~~~~~~------~~~~~~~~~--~~~~---~~~~~~~~i~D~~G~~~ 69 (206)
..+++++|+.++|||||+++|+.... ...+.. ..+.++... .+.+ ++..+.+.||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 56899999999999999999986421 111111 113333332 2333 45668999999999999
Q ss_pred cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc
Q 028654 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK 149 (206)
Q Consensus 70 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 149 (206)
+...+..++..+|++|+|+|+++..+.+....|...+. .+.|+++|+||+|+.... ..+...++....
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--------~~ipiIiViNKiDl~~~~----~~~~~~el~~~l 150 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--------NDLEIIPVINKIDLPSAD----PERVKKEIEEVI 150 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--------cCCCEEEEEECcCCCccC----HHHHHHHHHHHh
Confidence 99888999999999999999998666665555544331 167999999999986532 122223333333
Q ss_pred C--CCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654 150 G--NIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 150 ~--~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
+ ...++++||++|.|+++++++|.+.++...
T Consensus 151 g~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 151 GLDASEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred CCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 3 125899999999999999999999886543
No 163
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=5e-23 Score=155.74 Aligned_cols=175 Identities=19% Similarity=0.207 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc---------cccccccce
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFY 78 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 78 (206)
..|+++|.||+|||||+|+|++.... .+..|++|.+.......+.+. .+.++||+|-+. .......++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999998765 566777777777777777774 488899999442 223345567
Q ss_pred ecCcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654 79 RGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (206)
Q Consensus 79 ~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
..||++|||+|....-+..+ +.+|+... ++|+++|+||+|.... +....-.-+.+...+++
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr~~----------~kpviLvvNK~D~~~~-------e~~~~efyslG~g~~~~ 144 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILRRS----------KKPVILVVNKIDNLKA-------EELAYEFYSLGFGEPVP 144 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHhc----------CCCEEEEEEcccCchh-------hhhHHHHHhcCCCCceE
Confidence 88999999999986433322 33333311 6899999999997532 22222223455578899
Q ss_pred eeccCCCCHHHHHHHHHHHHh-hcCCCCCC-CCCccccCCCCCccCCC
Q 028654 157 TSAKEGFNVEAAFECIAKNAL-KNEPQEED-YLPDTIDVGGGQQQRSS 202 (206)
Q Consensus 157 ~s~~~~~~i~~l~~~i~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~ 202 (206)
+||.+|.|+.+|++++++.++ .....+++ .-+-.+.+-++.+..||
T Consensus 145 ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKS 192 (444)
T COG1160 145 ISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKS 192 (444)
T ss_pred eehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCch
Confidence 999999999999999999985 22222222 24556666666666554
No 164
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.90 E-value=2.1e-22 Score=161.33 Aligned_cols=155 Identities=23% Similarity=0.230 Sum_probs=111.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
.+.+|+++|+.++|||||+++|.+..+.....++.+.++....+.+.+. ..+.||||||++.|..++...+..+|++++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4678999999999999999999988776655555555555555555432 278999999999999888888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH-------c-CCCcEEEee
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-------K-GNIPYFETS 158 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~s 158 (206)
|+|+++....+....+ .... ..++|+++++||+|+.+.. .+.+...... . +..+++++|
T Consensus 165 VVda~dgv~~qT~e~i-~~~~-------~~~vPiIVviNKiDl~~~~-----~e~v~~~L~~~g~~~~~~~~~~~~v~iS 231 (587)
T TIGR00487 165 VVAADDGVMPQTIEAI-SHAK-------AANVPIIVAINKIDKPEAN-----PDRVKQELSEYGLVPEDWGGDTIFVPVS 231 (587)
T ss_pred EEECCCCCCHhHHHHH-HHHH-------HcCCCEEEEEECcccccCC-----HHHHHHHHHHhhhhHHhcCCCceEEEEE
Confidence 9999864322222222 1111 1178999999999996532 1222222211 1 135799999
Q ss_pred ccCCCCHHHHHHHHHHH
Q 028654 159 AKEGFNVEAAFECIAKN 175 (206)
Q Consensus 159 ~~~~~~i~~l~~~i~~~ 175 (206)
|++|.|+++++++|...
T Consensus 232 AktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 232 ALTGDGIDELLDMILLQ 248 (587)
T ss_pred CCCCCChHHHHHhhhhh
Confidence 99999999999999753
No 165
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.90 E-value=2.7e-23 Score=145.88 Aligned_cols=162 Identities=20% Similarity=0.201 Sum_probs=110.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC------------------CcccccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN------------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 68 (206)
..++|+++|+.++|||||+++|....... +.....+.......+........+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 35799999999999999999998644221 111223333333444312344788999999999
Q ss_pred ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHH-HHHH
Q 028654 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAK-AWCA 147 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~-~~~~ 147 (206)
++...+...+..+|++|+|+|+.+.-.... ...+..+... ++|+++|+||+|+.... .....+++. .+.+
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~-------~~p~ivvlNK~D~~~~~-~~~~~~~~~~~l~~ 152 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL-------GIPIIVVLNKMDLIEKE-LEEIIEEIKEKLLK 152 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT-------T-SEEEEEETCTSSHHH-HHHHHHHHHHHHHH
T ss_pred ceeecccceecccccceeeeeccccccccc-cccccccccc-------ccceEEeeeeccchhhh-HHHHHHHHHHHhcc
Confidence 998888888999999999999986543322 2222333222 77999999999998321 112222222 3433
Q ss_pred HcC-----CCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654 148 SKG-----NIPYFETSAKEGFNVEAAFECIAKNAL 177 (206)
Q Consensus 148 ~~~-----~~~~~~~s~~~~~~i~~l~~~i~~~~~ 177 (206)
... ..+++++||++|.|+++|++.|.+.++
T Consensus 153 ~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 153 EYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 332 357999999999999999999998775
No 166
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.90 E-value=2.1e-22 Score=156.93 Aligned_cols=154 Identities=19% Similarity=0.260 Sum_probs=113.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc--------ccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVA 76 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~ 76 (206)
...++|+++|++|+|||||+|+|++.... ....++++.++....+.+++ ..+.+|||||..++... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 35689999999999999999999987542 34456666777777777776 45689999997554322 235
Q ss_pred ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654 77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
+++.+|++++|+|++++.+.+.. |+..+.. .+.|+++|+||+|+... ....+....+ .+++.
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-------~~~piIlV~NK~Dl~~~--------~~~~~~~~~~-~~~~~ 340 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK-------SKKPFILVLNKIDLKIN--------SLEFFVSSKV-LNSSN 340 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh-------CCCCEEEEEECccCCCc--------chhhhhhhcC-CceEE
Confidence 67889999999999987776654 5544421 26799999999999643 1122333343 67899
Q ss_pred eeccCCCCHHHHHHHHHHHHhhcC
Q 028654 157 TSAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 157 ~s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
+|+++ .|++++++.+.+.+.+..
T Consensus 341 vSak~-~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKINAFY 363 (442)
T ss_pred EEEec-CCHHHHHHHHHHHHHHHh
Confidence 99997 699999999999886643
No 167
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=1.1e-22 Score=159.23 Aligned_cols=149 Identities=26% Similarity=0.311 Sum_probs=111.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc--------cccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF 77 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 77 (206)
..++|+++|.+|+|||||+|+|++.... ....++++.++....+.+++ ..+.+|||||..+.... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999987642 34456666677667777766 56789999997654322 2235
Q ss_pred eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
+..+|++++|+|++++.+......|.. ..+.|+++|+||+|+.+.. ... .....+++++
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~----------~~~~piiiV~NK~DL~~~~--~~~---------~~~~~~~i~i 350 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE----------LKDKPVIVVLNKADLTGEI--DLE---------EENGKPVIRI 350 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh----------cCCCCcEEEEEhhhccccc--hhh---------hccCCceEEE
Confidence 788999999999998776664433322 1267999999999997531 111 1223678999
Q ss_pred eccCCCCHHHHHHHHHHHHhh
Q 028654 158 SAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~~~ 178 (206)
|++++.|+++++++|.+.+..
T Consensus 351 SAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 351 SAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EeeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999998865
No 168
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=6.5e-23 Score=142.50 Aligned_cols=159 Identities=20% Similarity=0.169 Sum_probs=103.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc----ccc---cccceecCcEEE
Q 028654 13 ILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSL---GVAFYRGADCCV 85 (206)
Q Consensus 13 viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~---~~~~~~~~d~vi 85 (206)
++|++|+|||||+++|.+........+.++.......+.+.+ ...+.+|||||.... ... ....++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 579999999999999998865322233333344344444441 357789999996321 111 223467899999
Q ss_pred EEEECCCh------hhHHHHHHHHHHHHHhcCC---CCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654 86 LVYDVNVM------KSFDNLNNWREEFLIQASP---SDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (206)
Q Consensus 86 ~v~d~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
+|+|+++. .++.....|...+...... ....+.|+++|+||+|+.... .......... .......+++
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~-~~~~~~~~~~ 156 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE--ELEEELVREL-ALEEGAEVVP 156 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh--HHHHHHHHHH-hcCCCCCEEE
Confidence 99999987 4666666666666543211 001267999999999997542 1111111122 2223478999
Q ss_pred eeccCCCCHHHHHHHHHHH
Q 028654 157 TSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 157 ~s~~~~~~i~~l~~~i~~~ 175 (206)
+|++++.|++++++++.+.
T Consensus 157 ~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 157 ISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EehhhhcCHHHHHHHHHhh
Confidence 9999999999999998764
No 169
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=2e-22 Score=158.31 Aligned_cols=159 Identities=21% Similarity=0.168 Sum_probs=109.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccc-----------
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG----------- 74 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------- 74 (206)
..++|+++|.+++|||||+|+|++.... ....++++.+.....+...+ ..+.+|||||........
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHHH
Confidence 4589999999999999999999987543 33344555555555555555 368899999965433221
Q ss_pred ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH-H---HHHcC
Q 028654 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA-W---CASKG 150 (206)
Q Consensus 75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~-~---~~~~~ 150 (206)
..+++.+|++++|+|++++.+..... ++..+.. .+.|+++|+||+|+... ....++... + .....
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~-------~~~~iiiv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~ 317 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE-------AGKALVIVVNKWDLVKD---EKTREEFKKELRRKLPFLD 317 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH-------cCCcEEEEEECcccCCC---HHHHHHHHHHHHHhcccCC
Confidence 23578899999999999876655432 2232222 16799999999999721 111222222 2 22223
Q ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654 151 NIPYFETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 151 ~~~~~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
..+++++||++|.|++++|+++.+.+..
T Consensus 318 ~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 318 FAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999886654
No 170
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=1.5e-22 Score=138.13 Aligned_cols=147 Identities=20% Similarity=0.167 Sum_probs=99.4
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc--------ccccceecCc
Q 028654 12 IILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRGAD 82 (206)
Q Consensus 12 ~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d 82 (206)
+++|.+|+|||||+++|.+.... ....+..+.+.........+ ..+.+|||||...+.. .....+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47899999999999999986522 22233333444444444444 6789999999776443 3345678899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC
Q 028654 83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 83 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 162 (206)
++++|+|+.+..+.... .+...+.. . +.|+++|+||+|+.+.... .......+..+++++|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~-~------~~piiiv~nK~D~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~ 143 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK-S------KKPVILVVNKVDNIKEEDE-------AAEFYSLGFGEPIPISAEHG 143 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh-c------CCCEEEEEECcccCChHHH-------HHHHHhcCCCCeEEEecccC
Confidence 99999999865433322 12222211 1 5799999999999764211 11222344347899999999
Q ss_pred CCHHHHHHHHHHH
Q 028654 163 FNVEAAFECIAKN 175 (206)
Q Consensus 163 ~~i~~l~~~i~~~ 175 (206)
.|+++++++|.+.
T Consensus 144 ~gv~~l~~~l~~~ 156 (157)
T cd01894 144 RGIGDLLDAILEL 156 (157)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999875
No 171
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=1.4e-22 Score=132.03 Aligned_cols=114 Identities=33% Similarity=0.552 Sum_probs=87.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
||+|+|++|||||||+++|.+..+. ..+.+..+.++.............+.+||++|++.+.......+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7899999999999999999998866 23334444555555666666666799999999998888777779999999999
Q ss_pred EECCChhhHHHHHHH---HHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654 88 YDVNVMKSFDNLNNW---REEFLIQASPSDPENFPFVVLGNKTD 128 (206)
Q Consensus 88 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~pviiv~nK~D 128 (206)
||++++.++..+..+ +..+..... ++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-----~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDK-----NIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSS-----CSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCC-----CCCEEEEEeccC
Confidence 999999999887544 555544322 689999999998
No 172
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.90 E-value=3.2e-22 Score=141.44 Aligned_cols=160 Identities=22% Similarity=0.146 Sum_probs=104.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc----------cccccccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSLGVA 76 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~ 76 (206)
..++|+++|.+|+|||||+++|++..+.....++.+.+........ ...+.+|||||.. .+......
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 4689999999999999999999987644444444433332222222 2578999999942 22233333
Q ss_pred ceec---CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCc
Q 028654 77 FYRG---ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIP 153 (206)
Q Consensus 77 ~~~~---~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (206)
+++. .+++++++|.+.+...... .+...+ .. .+.|+++++||+|+......+...+.+....... ..+
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l-~~------~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-~~~ 170 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDL-QMIEWL-KE------YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-DDE 170 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHH-HHHHHH-HH------cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-CCc
Confidence 4443 4678889998765433221 111112 11 1678999999999976433333334444444433 378
Q ss_pred EEEeeccCCCCHHHHHHHHHHHHhh
Q 028654 154 YFETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 154 ~~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
++++|++++.|++++++.|.+.+.+
T Consensus 171 ~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 171 VILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999887654
No 173
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.90 E-value=1.8e-22 Score=140.70 Aligned_cols=151 Identities=21% Similarity=0.165 Sum_probs=97.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc----------cccccc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSLG 74 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 74 (206)
+...++|+++|.+|+|||||+|++.+..+.....++.+.+........++ .+.+|||||.. .+....
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 35578999999999999999999998764333333433333333333332 68899999942 222223
Q ss_pred cccee---cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcC-
Q 028654 75 VAFYR---GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG- 150 (206)
Q Consensus 75 ~~~~~---~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~- 150 (206)
..+++ .++++++|+|++.+.+.... .++..+.. .+.|+++++||+|+..........++++......+
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~-------~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~ 163 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE-------RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDAD 163 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccC
Confidence 33444 35799999999875444333 22222221 16799999999999754333334455555555443
Q ss_pred CCcEEEeeccCCCCHH
Q 028654 151 NIPYFETSAKEGFNVE 166 (206)
Q Consensus 151 ~~~~~~~s~~~~~~i~ 166 (206)
...++++||++|+|++
T Consensus 164 ~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 164 DPSVQLFSSLKKTGID 179 (179)
T ss_pred CCceEEEECCCCCCCC
Confidence 3589999999999874
No 174
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=5.5e-22 Score=137.39 Aligned_cols=156 Identities=23% Similarity=0.231 Sum_probs=102.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc-----------ccc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----------LGV 75 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~ 75 (206)
+++|+++|.+|+|||||++++.+.... ....+.++.......+...+ ..+.+|||||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 578999999999999999999987643 22233333333334444444 3578999999643311 112
Q ss_pred cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHH-HHHHHc---CC
Q 028654 76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAK-AWCASK---GN 151 (206)
Q Consensus 76 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~-~~~~~~---~~ 151 (206)
..+..+|++++|+|++++.+.... .+...+.. .+.|+++++||+|+.... ....+... .+.... ..
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~-------~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 149 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE-------EGKALVIVVNKWDLVEKD--SKTMKEFKKEIRRKLPFLDY 149 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh-------cCCCEEEEEeccccCCcc--HHHHHHHHHHHHhhcccccC
Confidence 345689999999999987665443 22222211 167999999999997642 11222222 222222 24
Q ss_pred CcEEEeeccCCCCHHHHHHHHHHH
Q 028654 152 IPYFETSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 152 ~~~~~~s~~~~~~i~~l~~~i~~~ 175 (206)
.+++++|++++.|++++++.+.+.
T Consensus 150 ~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 150 APIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred CceEEEeccCCCCHHHHHHHHHHh
Confidence 789999999999999999998764
No 175
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=4.9e-22 Score=154.04 Aligned_cols=158 Identities=17% Similarity=0.177 Sum_probs=109.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc--ccc------cccceec
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF--QSL------GVAFYRG 80 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~------~~~~~~~ 80 (206)
.+|+++|.+|+|||||+|+|++..+.....++.|.+.....+.+.+. ..+.+|||+|.... ... ....+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999987765444555566666656655442 26679999996321 111 1233578
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCc-EEEeec
Q 028654 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIP-YFETSA 159 (206)
Q Consensus 81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 159 (206)
+|++++|+|++++.+...+..|...+..... .+.|+++|+||+|+.... . ..... ...+ .+ ++.+||
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~----~~~pvIiV~NKiDL~~~~--~---~~~~~--~~~~-~~~~v~ISA 344 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDA----HEIPTLLVMNKIDMLDDF--E---PRIDR--DEEN-KPIRVWLSA 344 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhcc----CCCCEEEEEEcccCCCch--h---HHHHH--HhcC-CCceEEEeC
Confidence 9999999999998777766544444433221 267999999999996431 1 11111 1122 33 588999
Q ss_pred cCCCCHHHHHHHHHHHHhhc
Q 028654 160 KEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 160 ~~~~~i~~l~~~i~~~~~~~ 179 (206)
++|.|+++++++|.+.+...
T Consensus 345 ktG~GIdeL~e~I~~~l~~~ 364 (426)
T PRK11058 345 QTGAGIPLLFQALTERLSGE 364 (426)
T ss_pred CCCCCHHHHHHHHHHHhhhc
Confidence 99999999999999988654
No 176
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=2.3e-22 Score=137.03 Aligned_cols=145 Identities=20% Similarity=0.232 Sum_probs=99.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc----ccccccccceecCcEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----RFQSLGVAFYRGADCCV 85 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~vi 85 (206)
+|+++|.+|+|||||+|++.+.... ...+ ..+.+... .+|||||.. .+.......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--Cccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 7999999999999999998865311 1111 11222222 269999962 22222234468899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC-CcEEEeeccCCCC
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFETSAKEGFN 164 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~ 164 (206)
+|+|+++..++. ..|+..+ . .+.|+++++||+|+.+. ..+.+..+....+. .+++++|++++.|
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~---~-----~~~~ii~v~nK~Dl~~~-----~~~~~~~~~~~~~~~~p~~~~Sa~~g~g 134 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI---G-----VSKRQIAVISKTDMPDA-----DVAATRKLLLETGFEEPIFELNSHDPQS 134 (158)
T ss_pred EEEeCCCccccc--CHHHHhc---c-----CCCCeEEEEEccccCcc-----cHHHHHHHHHHcCCCCCEEEEECCCccC
Confidence 999999876542 2233322 1 15689999999998642 24555666666553 5899999999999
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 028654 165 VEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~~~ 182 (206)
++++|+.+.+.+.+....
T Consensus 135 i~~l~~~l~~~~~~~~~~ 152 (158)
T PRK15467 135 VQQLVDYLASLTKQEEAG 152 (158)
T ss_pred HHHHHHHHHHhchhhhcc
Confidence 999999998877655443
No 177
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.89 E-value=6.9e-22 Score=135.93 Aligned_cols=157 Identities=20% Similarity=0.129 Sum_probs=102.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc--------cccccee
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYR 79 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~ 79 (206)
..+|+++|++|+|||||++++.+...........+....... ........+.+|||||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRG-IYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEE-EEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 578999999999999999999987643221111111111111 1222346788999999543222 2234567
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeec
Q 028654 80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA 159 (206)
Q Consensus 80 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (206)
.+|++++|+|++++... ....+...+... +.|+++|+||+|+... .....+....+.......+++++|+
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~-------~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ 151 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKKS-------KTPVILVLNKIDLVKD--KEDLLPLLEKLKELGPFAEIFPISA 151 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHHh-------CCCEEEEEEchhcccc--HHHHHHHHHHHHhccCCCceEEEEe
Confidence 89999999999976221 112222323221 5699999999999743 2233344444444444578999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 028654 160 KEGFNVEAAFECIAKN 175 (206)
Q Consensus 160 ~~~~~i~~l~~~i~~~ 175 (206)
+++.++++++++|.+.
T Consensus 152 ~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 152 LKGENVDELLEEIVKY 167 (168)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999765
No 178
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.2e-22 Score=127.99 Aligned_cols=163 Identities=17% Similarity=0.286 Sum_probs=123.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
.+.+|+++|..++||||++..|.-.. .....||++..+ ..+++.+ +.+.+||.+|++..+..++.|+....++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnv--etVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCC-CcccccccceeE--EEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 47899999999999999999998765 344456655444 4444444 788999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|+|..+.+..+.+..-++.+ .......+.+++|.+||.|++.+...++..+.++.-......+.+.++++.+|.|+.
T Consensus 91 V~Dsa~~dr~eeAr~ELh~i---i~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRI---INDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEeccchhhHHHHHHHHHHH---hCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHH
Confidence 99999876666665444433 344444578999999999999875544443333322223335778999999999999
Q ss_pred HHHHHHHHHHh
Q 028654 167 AAFECIAKNAL 177 (206)
Q Consensus 167 ~l~~~i~~~~~ 177 (206)
+-+.|+...+-
T Consensus 168 eglswlsnn~~ 178 (180)
T KOG0071|consen 168 EGLSWLSNNLK 178 (180)
T ss_pred HHHHHHHhhcc
Confidence 99999988654
No 179
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.89 E-value=4.2e-22 Score=128.91 Aligned_cols=173 Identities=22% Similarity=0.395 Sum_probs=143.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
+.-.++|.++|.+..|||||+-.+.+..+...+..+.+.....+.+.+.+..+.+.+||.+|++++..+...+.+.+-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 44589999999999999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHH----HHHHHHHcCCCcEEEeecc
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKK----AKAWCASKGNIPYFETSAK 160 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~ 160 (206)
+++||.+.++++..+..|+.+....-. ..+| |+|+||.|+.-.- ..+.++. ...+++..+ .+.+++|+.
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~Nk----tAiP-ilvGTKyD~fi~l-p~e~Q~~I~~qar~YAk~mn-AsL~F~Sts 169 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNK----TAIP-ILVGTKYDLFIDL-PPELQETISRQARKYAKVMN-ASLFFCSTS 169 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCC----ccce-EEeccchHhhhcC-CHHHHHHHHHHHHHHHHHhC-CcEEEeecc
Confidence 999999999999999999988754322 1333 6789999964221 1122222 233444454 889999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCC
Q 028654 161 EGFNVEAAFECIAKNALKNEPQEE 184 (206)
Q Consensus 161 ~~~~i~~l~~~i~~~~~~~~~~~~ 184 (206)
.+.|++.+|.-+..++..-+++-+
T Consensus 170 ~sINv~KIFK~vlAklFnL~~ti~ 193 (205)
T KOG1673|consen 170 HSINVQKIFKIVLAKLFNLPWTIP 193 (205)
T ss_pred ccccHHHHHHHHHHHHhCCceecc
Confidence 999999999999999998888733
No 180
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=1.1e-21 Score=154.47 Aligned_cols=149 Identities=21% Similarity=0.229 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc--------ccccccccee
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFYR 79 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 79 (206)
++|+++|.+|+|||||+|+|.+.... ....++.+.+.....+.+.+ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 23345555556666666666 6789999999776 2223345678
Q ss_pred cCcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654 80 GADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 80 ~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
.+|++++|+|+++..+... +..|+... +.|+++|+||+|+... .+....+ ...+...++++
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~----------~~piilv~NK~D~~~~------~~~~~~~-~~lg~~~~~~i 142 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKS----------NKPVILVVNKVDGPDE------EADAYEF-YSLGLGEPYPI 142 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc----------CCcEEEEEECccCccc------hhhHHHH-HhcCCCCCEEE
Confidence 8999999999987543322 23333321 6799999999997541 1222222 23343458999
Q ss_pred eccCCCCHHHHHHHHHHHH
Q 028654 158 SAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~ 176 (206)
||++|.|+++++++|.+..
T Consensus 143 Sa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 143 SAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred EeeCCCCHHHHHHHHHhhC
Confidence 9999999999999998844
No 181
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=9.1e-22 Score=161.26 Aligned_cols=159 Identities=21% Similarity=0.217 Sum_probs=112.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
..+..|+++|+.++|||||+++|.+..+......+.+.+.....+.+.+ ..+.||||||+..|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 3567899999999999999999988776654445554445445555554 57899999999999988888889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH---HHHHc-CCCcEEEeeccC
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA---WCASK-GNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~s~~~ 161 (206)
+|+|+++....+....|. ... . .++|+++++||+|+.......+. .++.. +.... +.++++++||++
T Consensus 366 LVVdAddGv~~qT~e~i~-~a~----~---~~vPiIVviNKiDl~~a~~e~V~-~eL~~~~~~~e~~g~~vp~vpvSAkt 436 (787)
T PRK05306 366 LVVAADDGVMPQTIEAIN-HAK----A---AGVPIIVAINKIDKPGANPDRVK-QELSEYGLVPEEWGGDTIFVPVSAKT 436 (787)
T ss_pred EEEECCCCCCHhHHHHHH-HHH----h---cCCcEEEEEECccccccCHHHHH-HHHHHhcccHHHhCCCceEEEEeCCC
Confidence 999998743222222221 111 1 17899999999999753211111 11111 11222 247899999999
Q ss_pred CCCHHHHHHHHHHH
Q 028654 162 GFNVEAAFECIAKN 175 (206)
Q Consensus 162 ~~~i~~l~~~i~~~ 175 (206)
|.|+++++++|...
T Consensus 437 G~GI~eLle~I~~~ 450 (787)
T PRK05306 437 GEGIDELLEAILLQ 450 (787)
T ss_pred CCCchHHHHhhhhh
Confidence 99999999999864
No 182
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.88 E-value=7.8e-22 Score=160.37 Aligned_cols=162 Identities=22% Similarity=0.268 Sum_probs=112.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEE--EEEeCCeEEEEEEeeCCCccccccccccceecCcE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTK--EVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 83 (206)
.....|+++|+.++|||||+++|....+.....++.+.+.... .+...+....+.||||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 3567999999999999999999998776654444444333222 23333455789999999999999988889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHH---HHHc-CCCcEEEeec
Q 028654 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW---CASK-GNIPYFETSA 159 (206)
Q Consensus 84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~s~ 159 (206)
+|+|+|+++....+....+ ..+. ..++|+++++||+|+....... ..+.+..+ .... +..+++++||
T Consensus 322 aILVVDA~dGv~~QT~E~I-~~~k-------~~~iPiIVViNKiDl~~~~~e~-v~~eL~~~~ll~e~~g~~vpvv~VSA 392 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI-NYIQ-------AANVPIIVAINKIDKANANTER-IKQQLAKYNLIPEKWGGDTPMIPISA 392 (742)
T ss_pred EEEEEECcCCCChhhHHHH-HHHH-------hcCceEEEEEECCCccccCHHH-HHHHHHHhccchHhhCCCceEEEEEC
Confidence 9999999874332222222 1111 1278999999999997532111 11111111 1112 2478999999
Q ss_pred cCCCCHHHHHHHHHHHH
Q 028654 160 KEGFNVEAAFECIAKNA 176 (206)
Q Consensus 160 ~~~~~i~~l~~~i~~~~ 176 (206)
++|.|+++++++|...+
T Consensus 393 ktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 393 SQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCHHHHHHhhhhhh
Confidence 99999999999998764
No 183
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.88 E-value=1.6e-21 Score=138.18 Aligned_cols=122 Identities=18% Similarity=0.300 Sum_probs=89.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecC-cEEEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA-DCCVLVY 88 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~vi~v~ 88 (206)
+|+++|++|||||||+++|....+.....++ ............+....+.+||+||+..++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988765443332 2222222221113456789999999999988888888888 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC
Q 028654 89 DVNVM-KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN 133 (206)
Q Consensus 89 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~ 133 (206)
|+++. .++..+..|+..+...... ...+.|+++++||+|+..+.
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~-~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEK-VKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhh-ccCCCCEEEEecchhhcccC
Confidence 99987 6777777776665443221 12378999999999987653
No 184
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.88 E-value=2.1e-21 Score=132.50 Aligned_cols=154 Identities=17% Similarity=0.152 Sum_probs=103.7
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc-------cccceecCcEE
Q 028654 13 ILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-------GVAFYRGADCC 84 (206)
Q Consensus 13 viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~d~v 84 (206)
++|++|+|||||++++.+.... .......+............ ...+.+||+||....... ...++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5799999999999999987554 33333333334333333321 358899999996655433 33467889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|+|+++........ +...... .+.|+++|+||.|+..........+............+++++|++++.|
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~-------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 151 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE-------RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEG 151 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh-------cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCC
Confidence 9999999877665543 2222221 1779999999999986432221111112222333458999999999999
Q ss_pred HHHHHHHHHHH
Q 028654 165 VEAAFECIAKN 175 (206)
Q Consensus 165 i~~l~~~i~~~ 175 (206)
++++++++.+.
T Consensus 152 v~~l~~~l~~~ 162 (163)
T cd00880 152 IDELREALIEA 162 (163)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 185
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=4.4e-21 Score=150.96 Aligned_cols=162 Identities=22% Similarity=0.181 Sum_probs=108.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc-----------c
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-----------G 74 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~ 74 (206)
..++|+++|.+|+|||||+|+|++... .....++++.+.....+...+ ..+.+|||||....... .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 468999999999999999999997653 234445555555444444444 46788999995332211 1
Q ss_pred ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcE
Q 028654 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY 154 (206)
Q Consensus 75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
..++..+|++++|+|++++.+.... .+...+.. .+.|+++|+||+|+..........+.+..........++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~-------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i 321 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL-RIAGLALE-------AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPI 321 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH-------cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCE
Confidence 2356789999999999987665543 22222221 167999999999997432111222222222223345899
Q ss_pred EEeeccCCCCHHHHHHHHHHHHhh
Q 028654 155 FETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
+++||+++.|++++++.+.+....
T Consensus 322 ~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 322 VFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998876543
No 186
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=3.3e-21 Score=151.52 Aligned_cols=151 Identities=19% Similarity=0.248 Sum_probs=108.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCc--------cccccccccceec
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ--------ERFQSLGVAFYRG 80 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~ 80 (206)
+|+++|.+|+|||||+|+|.+.... ....++.+.+.......+.+ ..+.+|||||. ..+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987642 23345555555556666655 46899999995 3334445567789
Q ss_pred CcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654 81 ADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (206)
Q Consensus 81 ~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (206)
+|++++|+|+.+..+... +..|+.. .+.|+++|+||+|+.... .. ... ....+..+++++|
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~~----------~~~piilVvNK~D~~~~~--~~----~~~-~~~lg~~~~~~vS 141 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLRK----------SGKPVILVANKIDGKKED--AV----AAE-FYSLGFGEPIPIS 141 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHH----------hCCCEEEEEECccCCccc--cc----HHH-HHhcCCCCeEEEe
Confidence 999999999987443332 2333322 167999999999987542 11 111 2344545799999
Q ss_pred ccCCCCHHHHHHHHHHHHhhc
Q 028654 159 AKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 159 ~~~~~~i~~l~~~i~~~~~~~ 179 (206)
|.+|.|+.++++++.+.+.+.
T Consensus 142 a~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 142 AEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred CCcCCChHHHHHHHHHhcCcc
Confidence 999999999999999988654
No 187
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.88 E-value=4e-21 Score=154.83 Aligned_cols=162 Identities=17% Similarity=0.208 Sum_probs=112.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--C-------------CcccccceeeEEEEEEe---CCeEEEEEEeeCCCcc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS--N-------------QYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQE 68 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~--~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~ 68 (206)
...+++++|+.++|||||+.+|+..... . +...+.+.......+.+ ++..+.+.||||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 4569999999999999999999863211 0 11112222222222222 4557899999999999
Q ss_pred ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH
Q 028654 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS 148 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~ 148 (206)
++...+..++..+|++|+|+|+++....+....|..... .+.|+++|+||+|+..... .+....+...
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--------~~lpiIvViNKiDl~~a~~----~~v~~ei~~~ 153 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NDLEIIPVLNKIDLPAADP----ERVKQEIEDV 153 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEEEECCCCCcccH----HHHHHHHHHH
Confidence 998888889999999999999998655554444433221 1679999999999865321 1122233332
Q ss_pred cC--CCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654 149 KG--NIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 149 ~~--~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
.+ ...++++||++|.|+++++++|.+.++...
T Consensus 154 lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 154 IGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred hCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 32 134899999999999999999999887543
No 188
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.87 E-value=3.5e-21 Score=138.26 Aligned_cols=177 Identities=17% Similarity=0.131 Sum_probs=120.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc------------cccc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE------------RFQS 72 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------------~~~~ 72 (206)
.++.++|+|+|+||+|||||.|.+.+.++........+++....-+ +.....++.|+||||-- .+..
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 4678999999999999999999999998876666655544433333 44455799999999911 1111
Q ss_pred ccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc-----------cee---c
Q 028654 73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS-----------RVV---S 138 (206)
Q Consensus 73 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-----------~~~---~ 138 (206)
....++..||.+++++|+++...... ...+..+..+. ++|-++|+||+|...... .+. .
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys------~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~k 220 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS------KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLK 220 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh------cCCceeeccchhcchhhhHHhhhHHhccccccchhh
Confidence 22345678999999999996332221 23334444443 679999999999754311 011 1
Q ss_pred HHHHHHHHHHc------------CCCcEEEeeccCCCCHHHHHHHHHHHHhhcCCCCCCCCCc
Q 028654 139 EKKAKAWCASK------------GNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPD 189 (206)
Q Consensus 139 ~~~~~~~~~~~------------~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~ 189 (206)
.+-.+.|.... +...+|.+||++|+|++++.++|...++..+|+++..+..
T Consensus 221 l~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T 283 (379)
T KOG1423|consen 221 LEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVT 283 (379)
T ss_pred hhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCccccc
Confidence 11122221111 1235899999999999999999999999999997766543
No 189
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.87 E-value=1.3e-20 Score=155.10 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=109.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc----------ccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------GVA 76 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~ 76 (206)
+.++|+++|.+|+|||||+|++++........++.+.+.....+. .....+.++||||...+... ...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~--~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFS--TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEE--cCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 347899999999999999999998765544445554444444443 34467899999997665431 112
Q ss_pred ce--ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcE
Q 028654 77 FY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY 154 (206)
Q Consensus 77 ~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
++ ..+|++++|+|+++.+.. .++..++... +.|+++|+||+|+.+.. . ...+.+.+.+..+ .++
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~-------giPvIvVlNK~Dl~~~~--~-i~id~~~L~~~LG-~pV 145 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERN---LYLTLQLLEL-------GIPCIVALNMLDIAEKQ--N-IRIDIDALSARLG-CPV 145 (772)
T ss_pred HHhccCCCEEEEEecCCcchhh---HHHHHHHHHc-------CCCEEEEEEchhhhhcc--C-cHHHHHHHHHHhC-CCE
Confidence 22 478999999999875432 2233344322 78999999999987532 2 2344556666666 899
Q ss_pred EEeeccCCCCHHHHHHHHHHHH
Q 028654 155 FETSAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~~ 176 (206)
+++|+.+++|++++++.+.+..
T Consensus 146 vpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 146 IPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEEEeecCCCHHHHHHHHHHhh
Confidence 9999999999999999998865
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=6.4e-21 Score=157.28 Aligned_cols=161 Identities=22% Similarity=0.196 Sum_probs=110.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc----------cccc-cc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSL-GV 75 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~~ 75 (206)
.++|+++|.+|+|||||+|+|++.... ....++++.+.....+.+++. .+.+|||||..+ +... ..
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 579999999999999999999988643 344555556666666666664 456899999532 1111 12
Q ss_pred cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEE
Q 028654 76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF 155 (206)
Q Consensus 76 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (206)
.+++.+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+.+..........+..........+++
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~-------~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii 599 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD-------AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRV 599 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEE
Confidence 3467899999999999877766543 3333322 1679999999999975321111111122111122346789
Q ss_pred EeeccCCCCHHHHHHHHHHHHhh
Q 028654 156 ETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 156 ~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
++||++|.|++++++.+.+.+.+
T Consensus 600 ~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 600 NLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998765
No 191
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.87 E-value=4.1e-21 Score=149.03 Aligned_cols=170 Identities=16% Similarity=0.144 Sum_probs=109.1
Q ss_pred ccccceeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCcccccceeeEEEEEEe------------------C--C----
Q 028654 2 ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTKEVQF------------------E--D---- 54 (206)
Q Consensus 2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~--~---- 54 (206)
=.++.+.++|+++|+.++|||||+.+|.+.... .+.....+.........+ . +
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE 82 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence 355677899999999999999999999664211 122222222221111010 0 0
Q ss_pred eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC
Q 028654 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN 133 (206)
Q Consensus 55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~ 133 (206)
....+.||||||++.+.......+..+|++++|+|++++. ..+....+ ..+ .... ..|+++|+||+|+.+..
T Consensus 83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l-~~~~-----i~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MAL-DIIG-----IKNIVIVQNKIDLVSKE 155 (411)
T ss_pred cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHH-HHcC-----CCcEEEEEEeeccccch
Confidence 1257899999999988777766777789999999999643 11211111 112 1111 23689999999997642
Q ss_pred cceecHHHHHHHHHHc--CCCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654 134 SRVVSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 134 ~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
......+++..+.... ...+++++||+++.|++++++.|.+.+..
T Consensus 156 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 156 RALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred hHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 2222234444444332 24789999999999999999999987754
No 192
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.87 E-value=2.5e-21 Score=150.36 Aligned_cols=167 Identities=18% Similarity=0.147 Sum_probs=107.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCcccccceeeEEEE--------------EEe----CC------eEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTKE--------------VQF----ED------RLF 57 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~--------------~~~----~~------~~~ 57 (206)
++..++|+++|+.++|||||+++|.+.... .+.....+....... +.. ++ ...
T Consensus 1 ~~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 1 RQPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CCceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 356799999999999999999999764221 111111111111000 000 01 135
Q ss_pred EEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee
Q 028654 58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV 137 (206)
Q Consensus 58 ~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~ 137 (206)
.+.+||+||+++|...+...+..+|++++|+|+++..........+..+ .... ..|+++++||+|+........
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g-----i~~iIVvvNK~Dl~~~~~~~~ 154 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG-----IKNIVIVQNKIDLVSKEKALE 154 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcC-----CCeEEEEEEccccCCHHHHHH
Confidence 7899999999999888888888899999999998643111112222222 1111 236899999999976422222
Q ss_pred cHHHHHHHHHHc--CCCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654 138 SEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNAL 177 (206)
Q Consensus 138 ~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~l~~~i~~~~~ 177 (206)
..+++..+.... ...+++++||++++|+++++++|...+.
T Consensus 155 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 155 NYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 334444444332 2478999999999999999999998765
No 193
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.87 E-value=7.4e-20 Score=118.28 Aligned_cols=169 Identities=26% Similarity=0.373 Sum_probs=135.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccccceeeEEEEEEe-CCeEEEEEEeeCCCcccc-ccccccceecCc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS--NQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERF-QSLGVAFYRGAD 82 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d 82 (206)
..-+++|+|..++|||+++..+..+... ....+|. .+++...++. ++..-.+.|+||.|-... ..+-..++.-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTi-EDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTI-EDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccch-hhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 4679999999999999999998866544 3445555 4455555544 445557899999996555 455667888999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC
Q 028654 83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 83 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 162 (206)
++++|||..++++|+.+.-+-..+.+ ..+.+.+|+++.+||+|+.++ +.+..+....|++... +..+++++.+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk---~KdKKEvpiVVLaN~rdr~~p--~~vd~d~A~~Wa~rEk-vkl~eVta~dR 160 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDK---HKDKKEVPIVVLANKRDRAEP--REVDMDVAQIWAKREK-VKLWEVTAMDR 160 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhh---ccccccccEEEEechhhcccc--hhcCHHHHHHHHhhhh-eeEEEEEeccc
Confidence 99999999999999987766666654 344457899999999999866 8889999999999887 89999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCC
Q 028654 163 FNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 163 ~~i~~l~~~i~~~~~~~~~~ 182 (206)
..+-+.|-.+...+...+.+
T Consensus 161 ~sL~epf~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 161 PSLYEPFTYLASRLHQPQSK 180 (198)
T ss_pred hhhhhHHHHHHHhccCCccc
Confidence 99999999999887765444
No 194
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=1.8e-20 Score=154.68 Aligned_cols=155 Identities=21% Similarity=0.196 Sum_probs=105.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc--------cccccccce
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFY 78 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 78 (206)
..+|+++|.+++|||||+|+|++.... ....++.+.+.......+.+ ..+.+|||||... +......++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 468999999999999999999987542 23345555554444444444 5688999999653 223344567
Q ss_pred ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654 79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (206)
Q Consensus 79 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (206)
..+|++++|+|+++...... ..|...+.. .+.|+++|+||+|+.... .....+.. .+....+++|
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-------~~~pvIlV~NK~D~~~~~------~~~~~~~~-lg~~~~~~iS 417 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTD-ERIVRMLRR-------AGKPVVLAVNKIDDQASE------YDAAEFWK-LGLGEPYPIS 417 (712)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHh-------cCCCEEEEEECcccccch------hhHHHHHH-cCCCCeEEEE
Confidence 89999999999986322211 233333322 278999999999986421 11222222 2323568999
Q ss_pred ccCCCCHHHHHHHHHHHHhhc
Q 028654 159 AKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 159 ~~~~~~i~~l~~~i~~~~~~~ 179 (206)
|++|.|+++++++|++.+.+.
T Consensus 418 A~~g~GI~eLl~~i~~~l~~~ 438 (712)
T PRK09518 418 AMHGRGVGDLLDEALDSLKVA 438 (712)
T ss_pred CCCCCCchHHHHHHHHhcccc
Confidence 999999999999999988663
No 195
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.86 E-value=8.9e-21 Score=151.83 Aligned_cols=158 Identities=23% Similarity=0.234 Sum_probs=102.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC----------------CeEEEEEEeeCCCccccc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAGQERFQ 71 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~ 71 (206)
+.-|+++|++++|||||+++|.+..+......+.+.++....+..+ .....+.||||||++.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3468999999999999999999876653322222221111111111 011248899999999999
Q ss_pred cccccceecCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee----------c
Q 028654 72 SLGVAFYRGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV----------S 138 (206)
Q Consensus 72 ~~~~~~~~~~d~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----------~ 138 (206)
.++..+++.+|++++|+|+++ +.+++.+. .+. . .+.|+++++||+|+.+...... .
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~-~------~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~ 152 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR-M------YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQ 152 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH-H------cCCCEEEEEECCCccchhhhccCchHHHHHHhh
Confidence 888888999999999999987 33333322 111 1 1679999999999974211000 0
Q ss_pred H----HH--------HHHHHH-------------HcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654 139 E----KK--------AKAWCA-------------SKGNIPYFETSAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 139 ~----~~--------~~~~~~-------------~~~~~~~~~~s~~~~~~i~~l~~~i~~~~ 176 (206)
. +. ..++.. ..+..+++++||++|+|+++|+.+|....
T Consensus 153 ~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 153 EIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0 00 011111 12347899999999999999999887544
No 196
>PRK10218 GTP-binding protein; Provisional
Probab=99.86 E-value=2.7e-20 Score=149.52 Aligned_cols=165 Identities=18% Similarity=0.230 Sum_probs=114.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc--CCCCCC------------cccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVN--RKFSNQ------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS 72 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 72 (206)
...+|+++|+.++|||||+++|+. +.+... .....+.++......+......+.+|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 357999999999999999999986 322221 122334445555555555568999999999999999
Q ss_pred ccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----
Q 028654 73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS---- 148 (206)
Q Consensus 73 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~---- 148 (206)
.+..+++.+|++++|+|+++....+. ..++..+.. .++|+++++||+|+......... +++..+...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~-------~gip~IVviNKiD~~~a~~~~vl-~ei~~l~~~l~~~ 154 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA-------YGLKPIVVINKVDRPGARPDWVV-DQVFDLFVNLDAT 154 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH-------cCCCEEEEEECcCCCCCchhHHH-HHHHHHHhccCcc
Confidence 89999999999999999987432222 222222222 17799999999998765333322 233333211
Q ss_pred --cCCCcEEEeeccCCC----------CHHHHHHHHHHHHhhcC
Q 028654 149 --KGNIPYFETSAKEGF----------NVEAAFECIAKNALKNE 180 (206)
Q Consensus 149 --~~~~~~~~~s~~~~~----------~i~~l~~~i~~~~~~~~ 180 (206)
...++++++||.+|. ++..+++.|++.++...
T Consensus 155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 123789999999998 58899999888887543
No 197
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.86 E-value=5.4e-21 Score=125.11 Aligned_cols=136 Identities=26% Similarity=0.388 Sum_probs=98.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCC----ccccccccccceecCcEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----QERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~d~vi 85 (206)
||+++|+.|||||||+++|.+... .+..|....+. + .++|||| ...+..........+|+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~-------~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY-------D-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec-------c-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999988653 33344332221 1 2479999 3344444455557899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
++.|++++.+.-- ..+...+ +.|+|-|+||+|+... ....+..+++.+..+...+|.+|+.+++|+
T Consensus 69 ll~dat~~~~~~p-----P~fa~~f------~~pvIGVITK~Dl~~~---~~~i~~a~~~L~~aG~~~if~vS~~~~eGi 134 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASMF------NKPVIGVITKIDLPSD---DANIERAKKWLKNAGVKEIFEVSAVTGEGI 134 (143)
T ss_pred EEecCCCCCccCC-----chhhccc------CCCEEEEEECccCccc---hhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence 9999997543211 1222222 6799999999999842 245667777777777778899999999999
Q ss_pred HHHHHHHH
Q 028654 166 EAAFECIA 173 (206)
Q Consensus 166 ~~l~~~i~ 173 (206)
++|.++|.
T Consensus 135 ~eL~~~L~ 142 (143)
T PF10662_consen 135 EELKDYLE 142 (143)
T ss_pred HHHHHHHh
Confidence 99999874
No 198
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=1.3e-20 Score=151.70 Aligned_cols=146 Identities=19% Similarity=0.234 Sum_probs=106.1
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc------cccce--ecCcEEEE
Q 028654 15 GDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY--RGADCCVL 86 (206)
Q Consensus 15 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~vi~ 86 (206)
|.+|+|||||+|++.+........++.+.+.....+.+++ ..+.+|||||+.++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998876656667766666666666665 45789999998776543 22222 46899999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|+|+++.+.. .++..++.. .+.|+++|+||+|+.+.. .. ..+.+.+.+..+ .+++++||++|+|++
T Consensus 79 VvDat~ler~---l~l~~ql~~-------~~~PiIIVlNK~Dl~~~~--~i-~~d~~~L~~~lg-~pvv~tSA~tg~Gi~ 144 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE-------LGIPMILALNLVDEAEKK--GI-RIDEEKLEERLG-VPVVPTSATEGRGIE 144 (591)
T ss_pred EecCCcchhh---HHHHHHHHh-------cCCCEEEEEehhHHHHhC--CC-hhhHHHHHHHcC-CCEEEEECCCCCCHH
Confidence 9999874321 222222222 178999999999986532 12 234555666666 899999999999999
Q ss_pred HHHHHHHHHH
Q 028654 167 AAFECIAKNA 176 (206)
Q Consensus 167 ~l~~~i~~~~ 176 (206)
++++++.+.+
T Consensus 145 eL~~~i~~~~ 154 (591)
T TIGR00437 145 RLKDAIRKAI 154 (591)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 199
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.86 E-value=2e-20 Score=128.97 Aligned_cols=154 Identities=23% Similarity=0.247 Sum_probs=99.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc----------ccccccccee
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLGVAFYR 79 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~ 79 (206)
.|+++|.+|+|||||++.+.+..+.....++.+.+........++ .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 378999999999999999996555444444444433333333333 888999999432 2222233332
Q ss_pred ---cCcEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH-HcCCCc
Q 028654 80 ---GADCCVLVYDVNVMKSF--DNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-SKGNIP 153 (206)
Q Consensus 80 ---~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~ 153 (206)
..+++++++|.....+. ..+..|+... +.|+++|+||+|+.................. .....+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~----------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~ 147 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL----------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPP 147 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc----------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCc
Confidence 45788999998865322 2233343322 5689999999998654322323333333333 234478
Q ss_pred EEEeeccCCCCHHHHHHHHHHHH
Q 028654 154 YFETSAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 154 ~~~~s~~~~~~i~~l~~~i~~~~ 176 (206)
++++|++++.++++++++|.+.+
T Consensus 148 ~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 148 IILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred eEEEecCCCCCHHHHHHHHHHhC
Confidence 99999999999999999998753
No 200
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.86 E-value=1.9e-20 Score=151.16 Aligned_cols=161 Identities=21% Similarity=0.173 Sum_probs=107.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC---CCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
-|+++|+.++|||||+++|.+.. +..+...+.+.+.....+...+ ...+.||||||++.|...+...+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 47899999999999999998643 2333444544444333332222 2357899999999998888888899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcceecHHHHHHHHHHcC--CCcEEEeeccCCC
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVVSEKKAKAWCASKG--NIPYFETSAKEGF 163 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~ 163 (206)
|+|+++.-..+. ...+. +.... ++| +++|+||+|+.+........+++..+....+ ..+++++|+++|.
T Consensus 81 VVda~eg~~~qT-~ehl~-il~~l------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~ 152 (614)
T PRK10512 81 VVACDDGVMAQT-REHLA-ILQLT------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR 152 (614)
T ss_pred EEECCCCCcHHH-HHHHH-HHHHc------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence 999987322111 11111 11211 445 5799999999753222222344555544433 3789999999999
Q ss_pred CHHHHHHHHHHHHhhc
Q 028654 164 NVEAAFECIAKNALKN 179 (206)
Q Consensus 164 ~i~~l~~~i~~~~~~~ 179 (206)
|++++++.|.+.....
T Consensus 153 gI~~L~~~L~~~~~~~ 168 (614)
T PRK10512 153 GIDALREHLLQLPERE 168 (614)
T ss_pred CCHHHHHHHHHhhccc
Confidence 9999999998765443
No 201
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.86 E-value=7.5e-21 Score=148.90 Aligned_cols=158 Identities=20% Similarity=0.207 Sum_probs=102.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCcccccceeeEEEEEEeC
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS-------------------------------NQYKATIGADFLTKEVQFE 53 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 53 (206)
..+.++|+++|++++|||||+++|+..... .+..++++.+..... +.
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~--~~ 80 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKK--FE 80 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEE--Ee
Confidence 345789999999999999999999843211 112334444443333 33
Q ss_pred CeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC
Q 028654 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN 133 (206)
Q Consensus 54 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~ 133 (206)
...+.+.||||||++++...+...+..+|++++|+|+++...+.....+...+..... ..|+++++||+|+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-----~~~iivviNK~Dl~~~~ 155 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-----INQLIVAINKMDAVNYD 155 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-----CCeEEEEEEcccccccc
Confidence 4457899999999988877666677899999999999862121111111111222211 23689999999997531
Q ss_pred cc--eecHHHHHHHHHHcC----CCcEEEeeccCCCCHHHHH
Q 028654 134 SR--VVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAAF 169 (206)
Q Consensus 134 ~~--~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~l~ 169 (206)
.. ....+++..+....+ ..+++++||++|.|++++.
T Consensus 156 ~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 156 EKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 11 122345555554443 3679999999999998744
No 202
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.86 E-value=5.1e-20 Score=132.91 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=103.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc-------cccccceecCc
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFYRGAD 82 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d 82 (206)
+|+++|.+|+|||||+++|.+........+.++.+.....+.+.+ ..+++||+||..+.. ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998764433344445555556666655 578899999964332 12345678999
Q ss_pred EEEEEEECCChh-hHHHHHHHHHH----------------------------------------HHHhcC----------
Q 028654 83 CCVLVYDVNVMK-SFDNLNNWREE----------------------------------------FLIQAS---------- 111 (206)
Q Consensus 83 ~vi~v~d~~~~~-~~~~~~~~~~~----------------------------------------~~~~~~---------- 111 (206)
++++|+|+++.+ ....+...+.. ++..+.
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998754 22222222211 000000
Q ss_pred -----------CCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654 112 -----------PSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 112 -----------~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~ 176 (206)
......+|+++|+||+|+... ++...++.. ..++++||+++.|++++++.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-------~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-------EELDLLARQ---PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-------HHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 000113589999999998642 333344332 4689999999999999999998865
No 203
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.86 E-value=2.9e-20 Score=130.50 Aligned_cols=148 Identities=18% Similarity=0.131 Sum_probs=97.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 71 (206)
.++|+++|+.++|||||+++|+.... ..+..+.. +.......+.....++.|+||||+..+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~--Ti~~~~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGI--TINTAHVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCc--cEEeeeeEecCCCeEEEEEECcCHHHHH
Confidence 47899999999999999999975310 01112222 3333334444455688999999998888
Q ss_pred cccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcc-eecHHHHHHHHHHc
Q 028654 72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSR-VVSEKKAKAWCASK 149 (206)
Q Consensus 72 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~~~~~~~~~ 149 (206)
......+..+|++++|+|+...-..+. ...+..+... ++| +++++||+|+...... ....+++..+....
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~-------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~ 151 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV-------GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKY 151 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 888888899999999999986422221 2222222221 556 7899999999743211 11223455555443
Q ss_pred C----CCcEEEeeccCCCCH
Q 028654 150 G----NIPYFETSAKEGFNV 165 (206)
Q Consensus 150 ~----~~~~~~~s~~~~~~i 165 (206)
+ +++++++||++|.++
T Consensus 152 g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 152 GFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred cccccCCeEEEeeCccccCC
Confidence 2 478999999999875
No 204
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.85 E-value=1e-20 Score=148.18 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=103.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCC--CC-----------------------------CCcccccceeeEEEEEEeC
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRK--FS-----------------------------NQYKATIGADFLTKEVQFE 53 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~ 53 (206)
....++|+++|+.++|||||+++|+... .. .+...+.+.+.... .+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~--~~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHW--KFE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEE--EEc
Confidence 3457899999999999999999998522 11 11122333333333 344
Q ss_pred CeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 54 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
...+.+.||||||++.+.......+..+|++++|+|+++.++....+. +...+..... ..|+++|+||+|+.+.
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-----~~~iIVviNK~Dl~~~ 156 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-----INQLIVAINKMDSVNY 156 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-----CCeEEEEEEChhccCc
Confidence 445789999999999887777777889999999999998643211111 1111222221 2478999999999753
Q ss_pred Cc--ceecHHHHHHHHHHcC----CCcEEEeeccCCCCHHHHH
Q 028654 133 NS--RVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAAF 169 (206)
Q Consensus 133 ~~--~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~l~ 169 (206)
.. .....+++..++...+ .++++++||+++.|+.+++
T Consensus 157 ~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 157 DEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 21 1122345555665543 3689999999999998633
No 205
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.85 E-value=2.1e-20 Score=150.25 Aligned_cols=163 Identities=18% Similarity=0.215 Sum_probs=111.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCCCCc------------ccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR--KFSNQY------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG 74 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 74 (206)
.+|+++|+.++|||||+++|+.. .+.... ....+.++......+......+.+|||||+.+|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 48999999999999999999863 221110 1112233333333333344788999999999999888
Q ss_pred ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc-----
Q 028654 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----- 149 (206)
Q Consensus 75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~----- 149 (206)
..+++.+|++++|+|+.+.. ......|+..+... ++|+++|+||+|+.......+ .+++..+....
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~-------~ip~IVviNKiD~~~a~~~~v-~~ei~~l~~~~g~~~e 152 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL-------GLKPIVVINKIDRPSARPDEV-VDEVFDLFAELGADDE 152 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC-------CCCEEEEEECCCCCCcCHHHH-HHHHHHHHHhhccccc
Confidence 99999999999999998632 22234444444331 779999999999875432222 23333333211
Q ss_pred -CCCcEEEeeccCCC----------CHHHHHHHHHHHHhhcC
Q 028654 150 -GNIPYFETSAKEGF----------NVEAAFECIAKNALKNE 180 (206)
Q Consensus 150 -~~~~~~~~s~~~~~----------~i~~l~~~i~~~~~~~~ 180 (206)
...+++++||++|. |+..+|+.|++.++...
T Consensus 153 ~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 153 QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 13689999999995 79999999999887543
No 206
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.1e-21 Score=129.28 Aligned_cols=165 Identities=24% Similarity=0.324 Sum_probs=118.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC---CC----CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccccccee
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRK---FS----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR 79 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 79 (206)
..+.|+++|..++|||||+.++-... +. ....++.+.. ...+.+. ...+.|||.+|++..++++..++.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLn--ig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLN--IGTIEVC--NAPLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeeccccee--ecceeec--cceeEEEEcCChHHHHHHHHHHHH
Confidence 35788999999999999998864321 11 2223333333 3333444 357899999999999999999999
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH--cCCCcEEEe
Q 028654 80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS--KGNIPYFET 157 (206)
Q Consensus 80 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 157 (206)
.+|++|+++|+++++-++.-..-+..+. ......+.|+++.+||.|+.+.....+....... +.. ....++.++
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~---~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVV---ENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGL-AELIPRRDNPFQPV 167 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHH---HHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhcCCccCccccc
Confidence 9999999999999887766544333332 3334448999999999999875322222211211 111 124789999
Q ss_pred eccCCCCHHHHHHHHHHHHhhc
Q 028654 158 SAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
||.+|+|+++-..|+++.+.++
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999999988
No 207
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=6.7e-20 Score=133.19 Aligned_cols=165 Identities=21% Similarity=0.207 Sum_probs=123.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCc------cccc--cccccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ------ERFQ--SLGVAF 77 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~~~--~~~~~~ 77 (206)
...+.|+|.|.||+|||||++.+++........|.+|..+....+.... ..++++||||- +... .....+
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 3567899999999999999999999998888999999988888876655 67889999991 1111 111222
Q ss_pred ee-cCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcE
Q 028654 78 YR-GADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY 154 (206)
Q Consensus 78 ~~-~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
++ -.++++|++|++..+ +.+.-..++.++...+ +.|+++|+||+|.... ...+++.......+....
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f------~~p~v~V~nK~D~~~~----e~~~~~~~~~~~~~~~~~ 313 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF------KAPIVVVINKIDIADE----EKLEEIEASVLEEGGEEP 313 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc------CCCeEEEEecccccch----hHHHHHHHHHHhhccccc
Confidence 33 378999999999744 4455566777777665 4689999999998743 344555555555554667
Q ss_pred EEeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654 155 FETSAKEGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
..+++..+.+.+.+...+...+.+....
T Consensus 314 ~~~~~~~~~~~d~~~~~v~~~a~~~~~e 341 (346)
T COG1084 314 LKISATKGCGLDKLREEVRKTALEPLLE 341 (346)
T ss_pred cceeeeehhhHHHHHHHHHHHhhchhhh
Confidence 7889999999999998888887665443
No 208
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=7.1e-20 Score=138.79 Aligned_cols=161 Identities=23% Similarity=0.165 Sum_probs=116.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc-----------c
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-----------G 74 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~ 74 (206)
..++|+++|.|++|||||+|++++.... ....++++.+.....+++++ ..+.++||.|...-... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence 4699999999999999999999987654 56677777777777777777 45678899993222111 1
Q ss_pred ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC--CcceecHHHHHHHHHHcCCC
Q 028654 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG--NSRVVSEKKAKAWCASKGNI 152 (206)
Q Consensus 75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~ 152 (206)
...+..+|++++|+|++.+-+-++. .....+.. . +.+++||+||.|+.+. .......+++.......+..
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~----~---g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a 326 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL-RIAGLIEE----A---GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFA 326 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH----c---CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCC
Confidence 2345779999999999976554442 22222221 1 7799999999999875 22223333444444556678
Q ss_pred cEEEeeccCCCCHHHHHHHHHHHHh
Q 028654 153 PYFETSAKEGFNVEAAFECIAKNAL 177 (206)
Q Consensus 153 ~~~~~s~~~~~~i~~l~~~i~~~~~ 177 (206)
+++++||+++.++..+|+.+.+...
T Consensus 327 ~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 327 PIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred eEEEEEecCCCChHHHHHHHHHHHH
Confidence 9999999999999999998887553
No 209
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.85 E-value=9.3e-20 Score=138.53 Aligned_cols=155 Identities=25% Similarity=0.277 Sum_probs=116.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccc--------cc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------VA 76 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~ 76 (206)
...++++++|.||+|||||+|+|.+.+.. ....+++|.++....+.++| +.+.++||.|..+..... ..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 34689999999999999999999998765 67788999999999999988 667788999955433322 24
Q ss_pred ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654 77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
.++.||.+++|+|++.+.+-....-+ . . ...+.|+++|.||.|+..... .+.. ......+++.
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~~-~----~----~~~~~~~i~v~NK~DL~~~~~----~~~~----~~~~~~~~i~ 355 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLALI-E----L----LPKKKPIIVVLNKADLVSKIE----LESE----KLANGDAIIS 355 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHHH-H----h----cccCCCEEEEEechhcccccc----cchh----hccCCCceEE
Confidence 56789999999999975322222111 1 1 122779999999999987532 1111 2223357899
Q ss_pred eeccCCCCHHHHHHHHHHHHhhc
Q 028654 157 TSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 157 ~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
+|+++++|++.|.+.|.+.+...
T Consensus 356 iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 356 ISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EEecCccCHHHHHHHHHHHHhhc
Confidence 99999999999999999988776
No 210
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=1.2e-19 Score=124.02 Aligned_cols=159 Identities=20% Similarity=0.174 Sum_probs=109.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCC----------cccccccccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGVA 76 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~ 76 (206)
...-|+++|.+|+|||||+|+|+++.-......++|.+.....+.+++. +.++|.|| .+.+......
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 3457899999999999999999997754445566666666666666663 77899999 3445555556
Q ss_pred ceec---CcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC
Q 028654 77 FYRG---ADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN 151 (206)
Q Consensus 77 ~~~~---~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
|+.. ..++++++|+...-...+ +-.|+... ++|+++++||+|.............+.........
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~----------~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~ 169 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL----------GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP 169 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc----------CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC
Confidence 6643 568899999987443322 23333332 88999999999998753332222333322222221
Q ss_pred Cc--EEEeeccCCCCHHHHHHHHHHHHhh
Q 028654 152 IP--YFETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 152 ~~--~~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
.. ++..|+..+.|++++...|.+.+.+
T Consensus 170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 170 DDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 22 8889999999999999999987754
No 211
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.84 E-value=2.5e-22 Score=133.84 Aligned_cols=176 Identities=34% Similarity=0.603 Sum_probs=150.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCe-EEEEEEeeCCCccccccccccceecCcEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR-LFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
...++++|+|..|+|||+++.+++-..+...+..+.+.++..+....+.+ .+++++||..|++++..+..-+++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 45689999999999999999999988888888889888887776666553 36789999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
.+|||++...+++....|...+...+..-...-.|+++..||+|..... .......+..+.++.+....+++|++.+.+
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a-~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA-KNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHh-hhhhHHHHHHHHhccCccceeeeccccccC
Confidence 9999999999999999999988776665554456889999999987542 233356777888888888999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 028654 165 VEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~~~ 182 (206)
+.|+.+.+++.+..+..+
T Consensus 182 i~Ea~r~lVe~~lvnd~q 199 (229)
T KOG4423|consen 182 IPEAQRELVEKILVNDEQ 199 (229)
T ss_pred hhHHHHHHHHHHHhhccC
Confidence 999999999999887755
No 212
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.84 E-value=5.1e-20 Score=131.11 Aligned_cols=150 Identities=21% Similarity=0.146 Sum_probs=94.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-------------------------------cccccceeeEEEEEEeCCeEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQ-------------------------------YKATIGADFLTKEVQFEDRLFT 58 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 58 (206)
+|+++|++++|||||+++|+....... ..+..+.+.....+... ...
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP--KRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--Cce
Confidence 589999999999999999975432111 11223333333333333 357
Q ss_pred EEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcc--e
Q 028654 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR--V 136 (206)
Q Consensus 59 ~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~--~ 136 (206)
+.+|||||+.++...+...++.+|++++|+|+++...... ..... +..... ..++++|+||+|+...... .
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~-~~~~~~-----~~~iIvviNK~D~~~~~~~~~~ 151 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSY-ILSLLG-----IRHVVVAVNKMDLVDYSEEVFE 151 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHH-HHHHcC-----CCcEEEEEEchhcccCCHHHHH
Confidence 7899999998877666777889999999999986432111 11111 111111 2357889999998753211 1
Q ss_pred ecHHHHHHHHHHcC--CCcEEEeeccCCCCHHHH
Q 028654 137 VSEKKAKAWCASKG--NIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 137 ~~~~~~~~~~~~~~--~~~~~~~s~~~~~~i~~l 168 (206)
...+++..+....+ ..+++++||+++.|+.+.
T Consensus 152 ~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 152 EIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 12234444555544 356999999999998854
No 213
>PRK12736 elongation factor Tu; Reviewed
Probab=99.84 E-value=1.2e-19 Score=140.40 Aligned_cols=163 Identities=15% Similarity=0.131 Sum_probs=107.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 68 (206)
..+.++|+++|+.++|||||+++|++... ..+.....+ .......+......+.|+||||++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T--~~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGIT--INTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCcc--EEEEeeEecCCCcEEEEEECCCHH
Confidence 34578999999999999999999986311 011123333 333344454445678899999999
Q ss_pred ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCccee-cHHHHHHHH
Q 028654 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVV-SEKKAKAWC 146 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~-~~~~~~~~~ 146 (206)
+|.......+..+|++++|+|+........ ...+..+... ++| +++++||+|+........ ..+++..+.
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~-------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l 158 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV-------GVPYLVVFLNKVDLVDDEELLELVEMEVRELL 158 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc-------CCCEEEEEEEecCCcchHHHHHHHHHHHHHHH
Confidence 888777777888999999999986422222 2222222211 667 678999999974322111 223455555
Q ss_pred HHcC----CCcEEEeeccCCC--------CHHHHHHHHHHHHh
Q 028654 147 ASKG----NIPYFETSAKEGF--------NVEAAFECIAKNAL 177 (206)
Q Consensus 147 ~~~~----~~~~~~~s~~~~~--------~i~~l~~~i~~~~~ 177 (206)
...+ ..+++++|++++. ++.++++.+.+.++
T Consensus 159 ~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 159 SEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 4443 3689999999983 57788888877665
No 214
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3.7e-20 Score=123.88 Aligned_cols=165 Identities=27% Similarity=0.581 Sum_probs=138.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..++++++|..|.||||++++...+.|...+.++.+.....-....+...+++..|||.|++.+......++=.+..+|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 48999999999999999999999999999999999888876666555456899999999999999988888888999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
+||+...-+..+...|...+.+.+. ++|+++++||.|..... ... ....+.+. .++.++++|++.+.|++
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~-----NiPiv~cGNKvDi~~r~---~k~-k~v~~~rk-knl~y~~iSaksn~Nfe 158 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRE-----NIPIVLCGNKVDIKARK---VKA-KPVSFHRK-KNLQYYEISAKSNYNFE 158 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhc-----CCCeeeeccceeccccc---ccc-ccceeeec-ccceeEEeecccccccc
Confidence 9999999999999999999998876 88999999999986532 111 11112222 24889999999999999
Q ss_pred HHHHHHHHHHhhcCC
Q 028654 167 AAFECIAKNALKNEP 181 (206)
Q Consensus 167 ~l~~~i~~~~~~~~~ 181 (206)
.-|.|+.+.+.-.+.
T Consensus 159 kPFl~LarKl~G~p~ 173 (216)
T KOG0096|consen 159 RPFLWLARKLTGDPS 173 (216)
T ss_pred cchHHHhhhhcCCCC
Confidence 999999998866554
No 215
>PRK12735 elongation factor Tu; Reviewed
Probab=99.83 E-value=1.4e-19 Score=140.14 Aligned_cols=163 Identities=15% Similarity=0.126 Sum_probs=106.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 68 (206)
..+.++|+++|++++|||||+++|++... ..+.....+.+ .....+.....++.|+||||+.
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~--~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITIN--TSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEE--EeeeEEcCCCcEEEEEECCCHH
Confidence 34578999999999999999999986210 01112233333 3333444445678999999999
Q ss_pred ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEeeCCCCCCCCcc-eecHHHHHHHH
Q 028654 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV-VLGNKTDVDGGNSR-VVSEKKAKAWC 146 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~D~~~~~~~-~~~~~~~~~~~ 146 (206)
+|...+...+..+|++++|+|+.+....+. ..++..+... ++|.+ +++||+|+...... ....+++..+.
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~~-------gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l 158 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHHc-------CCCeEEEEEEecCCcchHHHHHHHHHHHHHHH
Confidence 888777788889999999999986432221 2222222211 66755 67999999743111 11223455555
Q ss_pred HHcC----CCcEEEeeccCCC----------CHHHHHHHHHHHHh
Q 028654 147 ASKG----NIPYFETSAKEGF----------NVEAAFECIAKNAL 177 (206)
Q Consensus 147 ~~~~----~~~~~~~s~~~~~----------~i~~l~~~i~~~~~ 177 (206)
...+ +.+++++|++++. ++..|++.|.+.++
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 5543 3789999999984 57778877777654
No 216
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.83 E-value=3e-19 Score=143.60 Aligned_cols=159 Identities=25% Similarity=0.279 Sum_probs=100.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC------CeE-----E-----EEEEeeCCCcccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE------DRL-----F-----TLQIWDTAGQERF 70 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-----~-----~~~i~D~~G~~~~ 70 (206)
.+..|+++|++++|||||+++|.+..+........+.+......... +.. . .+.||||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 34579999999999999999998765432222222111111111110 111 1 2689999999999
Q ss_pred ccccccceecCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee----------
Q 028654 71 QSLGVAFYRGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV---------- 137 (206)
Q Consensus 71 ~~~~~~~~~~~d~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~---------- 137 (206)
...+...+..+|++++|+|+++ +.++..+.. +. . .+.|+++++||+|+........
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~-~------~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~ 153 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK-R------RKTPFVVAANKIDRIPGWKSTEDAPFLESIEK 153 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH-H------cCCCEEEEEECcCCchhhhhhcCchHHHHHhh
Confidence 8888888889999999999987 444443321 11 1 1779999999999863211000
Q ss_pred ----cHHH-------HHHHHHH--------------cCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654 138 ----SEKK-------AKAWCAS--------------KGNIPYFETSAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 138 ----~~~~-------~~~~~~~--------------~~~~~~~~~s~~~~~~i~~l~~~i~~~~ 176 (206)
..+. +..+... .+..+++++||++|.|++++++.+...+
T Consensus 154 ~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 154 QSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 0000 1011111 1347899999999999999998886533
No 217
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.2e-18 Score=126.34 Aligned_cols=174 Identities=21% Similarity=0.223 Sum_probs=125.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCc-------cccccccccceecC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ERFQSLGVAFYRGA 81 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~~~~~~~~~~~~ 81 (206)
.+++++|.|++|||||++.|++........+++|.......+.+.+ .+++++|+||. ..........+++|
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 5889999999999999999999988877888888888899999988 67888999992 12234566778999
Q ss_pred cEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCCC--------------------------------------------
Q 028654 82 DCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPE-------------------------------------------- 116 (206)
Q Consensus 82 d~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 116 (206)
|.+++|+|+..... .+.+.+.+...--... ...+
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrln-k~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLN-KRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEec-CCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 99999999986554 3333332222100000 0011
Q ss_pred ------------------CCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHH--
Q 028654 117 ------------------NFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA-- 176 (206)
Q Consensus 117 ------------------~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~-- 176 (206)
-+|.+.|.||+|+.. .++...+.+.. ..+++|+..+.|+++|.+.|.+.+
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-------~e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-------LEELERLARKP---NSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccC-------HHHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhhCe
Confidence 129999999999875 24455554443 679999999999999999999976
Q ss_pred ---hhcCCCCCCCCCccccCCC
Q 028654 177 ---LKNEPQEEDYLPDTIDVGG 195 (206)
Q Consensus 177 ---~~~~~~~~~~~~~~~~~~~ 195 (206)
+-.++.+.+..+++.-++.
T Consensus 291 iRVYtK~~g~~pd~~~PlIlr~ 312 (365)
T COG1163 291 IRVYTKPPGEEPDFDEPLILRR 312 (365)
T ss_pred EEEEecCCCCCCCCCCCeEEeC
Confidence 4445555555555554443
No 218
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.82 E-value=3.7e-19 Score=128.59 Aligned_cols=115 Identities=18% Similarity=0.150 Sum_probs=78.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-------------c---ccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQ-------------Y---KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL 73 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 73 (206)
+|+++|+.|+|||||+++|+....... + ....+.++......+.....++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999986421100 0 001111222222333334478899999999998888
Q ss_pred cccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 74 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
+..+++.+|++++|+|+++.... ....++..+... ++|+++++||+|+...
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~-------~~P~iivvNK~D~~~a 131 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL-------NIPTIIFVNKIDRAGA 131 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc-------CCCEEEEEECccccCC
Confidence 88899999999999999875432 223444433321 6799999999998753
No 219
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.82 E-value=7e-20 Score=116.84 Aligned_cols=165 Identities=22% Similarity=0.317 Sum_probs=119.5
Q ss_pred ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcE
Q 028654 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 83 (206)
+-..+++|+++|-.++|||||+..|.+.+.. ...|+.+ +..+.+.+.+ .+.+.+||.+|+...+..|..|+.+.|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccce
Confidence 3356899999999999999999999887643 3344444 4444554443 4789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (206)
Q Consensus 84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (206)
+|||+|.++..-++.+..-+.++.. ......+|++|..||.|+.-+.........+.--......+.+-++|+..++
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELle---eeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~e 165 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLE---EEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLE 165 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhh---hhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCcccccc
Confidence 9999998888878776554444443 3333478999999999987543222222211111112223677889999999
Q ss_pred CHHHHHHHHHHH
Q 028654 164 NVEAAFECIAKN 175 (206)
Q Consensus 164 ~i~~l~~~i~~~ 175 (206)
|+.+-.+|+.+.
T Consensus 166 g~~dg~~wv~sn 177 (185)
T KOG0074|consen 166 GSTDGSDWVQSN 177 (185)
T ss_pred CccCcchhhhcC
Confidence 999888888764
No 220
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.82 E-value=1.1e-19 Score=130.35 Aligned_cols=148 Identities=18% Similarity=0.160 Sum_probs=93.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCcccccceeeEEEEEEeCCeEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFS-------------------------------NQYKATIGADFLTKEVQFEDRLFT 58 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 58 (206)
+|+++|+.++|||||+.+|+..... .+....++.+.....+.+. ...
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~--~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE--KYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC--CeE
Confidence 4899999999999999998643111 1112223333333334333 468
Q ss_pred EEEeeCCCccccccccccceecCcEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCC
Q 028654 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-------SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (206)
Q Consensus 59 ~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 131 (206)
+.+|||||+..+.......+..+|++++|+|+++.. ..+....+ ... .... ..|+++++||+|+..
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~-~~~~-----~~~iiivvNK~Dl~~ 151 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLA-RTLG-----VKQLIVAVNKMDDVT 151 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHH-HHcC-----CCeEEEEEEcccccc
Confidence 899999999887777777778899999999998742 11111111 111 1111 257999999999974
Q ss_pred CCcc----eecHHHHHHHHHHcC----CCcEEEeeccCCCCHH
Q 028654 132 GNSR----VVSEKKAKAWCASKG----NIPYFETSAKEGFNVE 166 (206)
Q Consensus 132 ~~~~----~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~ 166 (206)
.... ....+.+..+....+ .++++++||++|.|++
T Consensus 152 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 152 VNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 2101 112223333333332 3679999999999987
No 221
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=1.8e-18 Score=115.78 Aligned_cols=160 Identities=18% Similarity=0.276 Sum_probs=115.1
Q ss_pred ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----cccc-----cceeeEEEEEEeCCeEEEEEEeeCCCccccccc
Q 028654 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ-----YKAT-----IGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL 73 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 73 (206)
.+....+|+|+|+.++||||++.++........ .... ++.-.......+. ....+.+++||||+++.-+
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-~~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-EDTGVHLFGTPGQERFKFM 84 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-CcceEEEecCCCcHHHHHH
Confidence 356688999999999999999999988764211 1111 1111111112222 2257889999999999999
Q ss_pred cccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc-CCC
Q 028654 74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK-GNI 152 (206)
Q Consensus 74 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~ 152 (206)
+..+.+.+.++|+++|.+.+..+ .....+.-+.... .+|++|++||.|+... ...+.+++..... -..
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~------~ip~vVa~NK~DL~~a----~ppe~i~e~l~~~~~~~ 153 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN------PIPVVVAINKQDLFDA----LPPEKIREALKLELLSV 153 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc------CCCEEEEeeccccCCC----CCHHHHHHHHHhccCCC
Confidence 99999999999999999988777 3333333332221 2799999999999875 3455666555544 258
Q ss_pred cEEEeeccCCCCHHHHHHHHHHH
Q 028654 153 PYFETSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 153 ~~~~~s~~~~~~i~~l~~~i~~~ 175 (206)
+++++++.++++..+.++.+...
T Consensus 154 ~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 154 PVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ceeeeecccchhHHHHHHHHHhh
Confidence 99999999999999999888776
No 222
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.82 E-value=5.2e-19 Score=127.77 Aligned_cols=159 Identities=19% Similarity=0.211 Sum_probs=121.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc----cccccccc---eec
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAF---YRG 80 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~ 80 (206)
...+.++|.|++|||||++++..........+.+|.......+.+++.. ++.+-|.||.-+ ..-+-..+ +..
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHh
Confidence 3467899999999999999999988777777888887777776666543 488999999322 12222333 356
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654 81 ADCCVLVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 81 ~d~vi~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
++.++||+|++.. ..++.++.+..++..+-.. ..+.|.++|+||+|+.+. ..+.++++.....+..++++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~--L~~rp~liVaNKiD~~ea-----e~~~l~~L~~~lq~~~V~pv 347 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKG--LADRPALIVANKIDLPEA-----EKNLLSSLAKRLQNPHVVPV 347 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhh--hccCceEEEEeccCchhH-----HHHHHHHHHHHcCCCcEEEe
Confidence 8999999999987 7888888877777665333 236799999999998632 22335778888876679999
Q ss_pred eccCCCCHHHHHHHHHH
Q 028654 158 SAKEGFNVEAAFECIAK 174 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~ 174 (206)
||+.++++.++++.|.+
T Consensus 348 sA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 348 SAKSGEGLEELLNGLRE 364 (366)
T ss_pred eeccccchHHHHHHHhh
Confidence 99999999999988765
No 223
>CHL00071 tufA elongation factor Tu
Probab=99.82 E-value=5.2e-19 Score=137.57 Aligned_cols=150 Identities=17% Similarity=0.122 Sum_probs=98.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS----------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 68 (206)
....++|+++|++++|||||+++|++.... .+..++.+.+ .....+.....++.|+||||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~--~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEE--ccEEEEccCCeEEEEEECCChH
Confidence 345789999999999999999999864211 1122333332 2333344444678899999998
Q ss_pred ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcc-eecHHHHHHHH
Q 028654 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSR-VVSEKKAKAWC 146 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~~~~~~ 146 (206)
++...+...+..+|++++|+|+...-..+. ...+..+... ++| +++++||+|+...... ....+++..+.
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~~-------g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l 158 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQV-------GVPNIVVFLNKEDQVDDEELLELVELEVRELL 158 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 888878888889999999999986432221 2222222211 667 7789999999753211 11223455555
Q ss_pred HHcC----CCcEEEeeccCCCC
Q 028654 147 ASKG----NIPYFETSAKEGFN 164 (206)
Q Consensus 147 ~~~~----~~~~~~~s~~~~~~ 164 (206)
...+ .++++++|+.+|.+
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 159 SKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHhCCCCCcceEEEcchhhccc
Confidence 5443 37899999998863
No 224
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.81 E-value=7.9e-19 Score=138.86 Aligned_cols=158 Identities=20% Similarity=0.232 Sum_probs=117.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc------cccccce--
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFY-- 78 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~-- 78 (206)
+..+|+++|.||+|||||+|++++........|+.|.+.....+.+.+. .++++|+||.-.+. ...+.++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 3457999999999999999999999888888888888887777777774 47888999933222 1222333
Q ss_pred ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654 79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (206)
Q Consensus 79 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (206)
..+|+++-|+|+++-+.--.+ .-++... +.|++++.|++|......-..+.+. +.+..+ +|+++++
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyl---tlQLlE~-------g~p~ilaLNm~D~A~~~Gi~ID~~~---L~~~LG-vPVv~tv 145 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYL---TLQLLEL-------GIPMILALNMIDEAKKRGIRIDIEK---LSKLLG-VPVVPTV 145 (653)
T ss_pred CCCCEEEEEcccchHHHHHHH---HHHHHHc-------CCCeEEEeccHhhHHhcCCcccHHH---HHHHhC-CCEEEEE
Confidence 357999999999975432222 2223222 8899999999998765444444444 445566 9999999
Q ss_pred ccCCCCHHHHHHHHHHHHhhcC
Q 028654 159 AKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 159 ~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
|++|.|++++++.+.+....+.
T Consensus 146 A~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 146 AKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred eecCCCHHHHHHHHHHhccccc
Confidence 9999999999999998666555
No 225
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.81 E-value=6.4e-19 Score=136.60 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=97.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 68 (206)
..+.++|+++|+.++|||||+++|++... ..+.....+.+ ...+.+......+.||||||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchH
Confidence 34578999999999999999999974210 11122333333 3444455555688999999999
Q ss_pred ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEeeCCCCCCCCccee-cHHHHHHHH
Q 028654 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV-VLGNKTDVDGGNSRVV-SEKKAKAWC 146 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~D~~~~~~~~~-~~~~~~~~~ 146 (206)
+|...+...+..+|++++|+|+.+....+.. +.+..+... ++|.+ +++||+|+.+...... ..+++..+.
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~-------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l 158 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc-------CCCEEEEEEEecccCCHHHHHHHHHHHHHHHH
Confidence 8887777777889999999999873222221 222222211 56755 6899999975321111 223555566
Q ss_pred HHcC----CCcEEEeeccCCC
Q 028654 147 ASKG----NIPYFETSAKEGF 163 (206)
Q Consensus 147 ~~~~----~~~~~~~s~~~~~ 163 (206)
...+ +++++++|+.++.
T Consensus 159 ~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 159 SEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HhcCCCccCccEEECcccccc
Confidence 5553 2789999999874
No 226
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.81 E-value=6.4e-19 Score=126.23 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=97.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcc--------------cccceeeEEEEE----------------------EeC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYK--------------ATIGADFLTKEV----------------------QFE 53 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~--------------~~~~~~~~~~~~----------------------~~~ 53 (206)
||+++|+.++|||||+++|..+.+..... .+.+.......+ .+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58899999999999999998765532111 000000000000 001
Q ss_pred CeEEEEEEeeCCCcccccccccccee--cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCC
Q 028654 54 DRLFTLQIWDTAGQERFQSLGVAFYR--GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (206)
Q Consensus 54 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 131 (206)
.....+.++||||++.+.......+. .+|++++|+|+........ ..++..+... ++|+++|+||+|+..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~~-------~ip~ivvvNK~D~~~ 152 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALAL-------NIPVFVVVTKIDLAP 152 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCEEEEEECccccC
Confidence 11356889999999988776665554 6899999999886433222 2222222211 779999999999875
Q ss_pred CCcceecHHHHHHHHHH-------------------------cCCCcEEEeeccCCCCHHHHHHHHHH
Q 028654 132 GNSRVVSEKKAKAWCAS-------------------------KGNIPYFETSAKEGFNVEAAFECIAK 174 (206)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~s~~~~~~i~~l~~~i~~ 174 (206)
........+++..+... ....+++.+|+.+|+|+++|...|..
T Consensus 153 ~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 153 ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 43223333333333321 11348999999999999999877743
No 227
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=7.4e-19 Score=135.09 Aligned_cols=171 Identities=18% Similarity=0.211 Sum_probs=127.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCcccccceeeEEEEEEe-CCeEEEEEEeeCCCccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF---------------SNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQER 69 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~ 69 (206)
++..++.|+-+-..|||||..+|+.... ..++..+.|.......+.+ ++..+.+.++||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 4567899999999999999999975432 1234445555444444444 35678899999999999
Q ss_pred cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc
Q 028654 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK 149 (206)
Q Consensus 70 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 149 (206)
|.......+..++++++++|++..-.-+....++..+.. +..+|.|+||+|++.++...+..+....| ...
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~--------~L~iIpVlNKIDlp~adpe~V~~q~~~lF-~~~ 208 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA--------GLAIIPVLNKIDLPSADPERVENQLFELF-DIP 208 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc--------CCeEEEeeeccCCCCCCHHHHHHHHHHHh-cCC
Confidence 999999999999999999999976555566666555543 66799999999999875444333222222 223
Q ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhhcCCCCCCC
Q 028654 150 GNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDY 186 (206)
Q Consensus 150 ~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~~~~~ 186 (206)
..+++.+||++|.++.++++.|++.++..+.....+
T Consensus 209 -~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~p 244 (650)
T KOG0462|consen 209 -PAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAP 244 (650)
T ss_pred -ccceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcc
Confidence 368999999999999999999999998766554443
No 228
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.81 E-value=6.7e-19 Score=125.91 Aligned_cols=113 Identities=25% Similarity=0.279 Sum_probs=78.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-------------------cccccceeeEEEEEEe---CCeEEEEEEeeCCCc
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQ-------------------YKATIGADFLTKEVQF---EDRLFTLQIWDTAGQ 67 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 67 (206)
+|+++|+.++|||||+++|+....... .....+.......+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987543321 0111111111111211 345688999999999
Q ss_pred cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 130 (206)
.++......++..+|++++|+|+++..+... ..++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~-------~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL-------EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECcccC
Confidence 9988888888899999999999987655432 233333221 157999999999986
No 229
>PRK00049 elongation factor Tu; Reviewed
Probab=99.80 E-value=2.1e-18 Score=133.53 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=104.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 69 (206)
.+.++|+++|+.++|||||+++|++... ..+.....+.+ .....+.....++.|+||||+.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITIN--TAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEe--eeEEEEcCCCeEEEEEECCCHHH
Confidence 5678999999999999999999986311 01112333333 33344444456788999999988
Q ss_pred cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEeeCCCCCCCCcc-eecHHHHHHHHH
Q 028654 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV-VLGNKTDVDGGNSR-VVSEKKAKAWCA 147 (206)
Q Consensus 70 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~D~~~~~~~-~~~~~~~~~~~~ 147 (206)
|.......+..+|++++|+|+........ ..++..+... ++|.+ +++||+|+...... ....+++..+..
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~~-------g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~ 159 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHHc-------CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence 88777788899999999999986432222 2222222211 66875 68999999753111 112234444444
Q ss_pred Hc----CCCcEEEeeccCCC----------CHHHHHHHHHHHHh
Q 028654 148 SK----GNIPYFETSAKEGF----------NVEAAFECIAKNAL 177 (206)
Q Consensus 148 ~~----~~~~~~~~s~~~~~----------~i~~l~~~i~~~~~ 177 (206)
.. .+++++++|++++. ++..+++.|.+.+.
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 43 24789999999875 45666666666543
No 230
>PLN03126 Elongation factor Tu; Provisional
Probab=99.80 E-value=2.1e-18 Score=135.58 Aligned_cols=149 Identities=17% Similarity=0.108 Sum_probs=97.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 68 (206)
..+.++|+++|+.++|||||+++|+.... ..+.....+. ......+......+.|+|+||++
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi--~~~~~~~~~~~~~i~liDtPGh~ 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITI--NTATVEYETENRHYAHVDCPGHA 155 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeE--EEEEEEEecCCcEEEEEECCCHH
Confidence 45678999999999999999999985211 1122222222 22233333334578899999999
Q ss_pred ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcc-eecHHHHHHHH
Q 028654 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSR-VVSEKKAKAWC 146 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~~~~~~ 146 (206)
+|...+...+..+|++++|+|+.+....+. .+++..+... ++| +++++||+|+.+.... ....+++..+.
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~-------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l 227 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV-------GVPNMVVFLNKQDQVDDEELLELVELEVRELL 227 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCeEEEEEecccccCHHHHHHHHHHHHHHHH
Confidence 998888888889999999999986433222 2222222211 667 7789999999753211 11222445555
Q ss_pred HHc----CCCcEEEeeccCCC
Q 028654 147 ASK----GNIPYFETSAKEGF 163 (206)
Q Consensus 147 ~~~----~~~~~~~~s~~~~~ 163 (206)
... .+.+++++|+.++.
T Consensus 228 ~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 228 SSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HhcCCCcCcceEEEEEccccc
Confidence 443 25789999998874
No 231
>COG2262 HflX GTPases [General function prediction only]
Probab=99.80 E-value=3.1e-18 Score=128.20 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=117.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCc---------ccccccccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ---------ERFQSLGVA 76 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~ 76 (206)
...+.|.++|.+|+|||||+|+|++........-+.|.+.+...+.+.+ ...+.+.||-|. +.|.+. ..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksT-LE 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKST-LE 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHH-HH
Confidence 4577899999999999999999998877666666667777777777764 346677899992 223222 22
Q ss_pred ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654 77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
....+|+++.|+|++++...+.+......+... +...+|+|+|.||+|+..... .... ..... ...+.
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el----~~~~~p~i~v~NKiD~~~~~~------~~~~-~~~~~-~~~v~ 335 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEI----GADEIPIILVLNKIDLLEDEE------ILAE-LERGS-PNPVF 335 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc----CCCCCCEEEEEecccccCchh------hhhh-hhhcC-CCeEE
Confidence 346799999999999986666655544444333 223689999999999876421 1111 12221 15799
Q ss_pred eeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654 157 TSAKEGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 157 ~s~~~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
+||+++.|++.|++.|.+.+......
T Consensus 336 iSA~~~~gl~~L~~~i~~~l~~~~~~ 361 (411)
T COG2262 336 ISAKTGEGLDLLRERIIELLSGLRTE 361 (411)
T ss_pred EEeccCcCHHHHHHHHHHHhhhcccc
Confidence 99999999999999999988865443
No 232
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.80 E-value=5.2e-18 Score=119.78 Aligned_cols=162 Identities=16% Similarity=0.223 Sum_probs=95.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccce---eeEEEEEEeCCeEEEEEEeeCCCccccccccc-----ccee
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGA---DFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV-----AFYR 79 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-----~~~~ 79 (206)
+++|+++|.+|+|||||+|+|.+...........+. ......+.. .....+.+|||||......... ..+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 478999999999999999999986543222111111 111111111 1123689999999643222222 2256
Q ss_pred cCcEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcc---------eecHHHHHHHHH--
Q 028654 80 GADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR---------VVSEKKAKAWCA-- 147 (206)
Q Consensus 80 ~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---------~~~~~~~~~~~~-- 147 (206)
.+|+++++.+.. +... ..|+..+... +.|+++|+||+|+...... ....+.+.+...
T Consensus 80 ~~d~~l~v~~~~----~~~~d~~~~~~l~~~-------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 148 (197)
T cd04104 80 EYDFFIIISSTR----FSSNDVKLAKAIQCM-------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLEN 148 (197)
T ss_pred CcCEEEEEeCCC----CCHHHHHHHHHHHHh-------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHH
Confidence 789988885432 2222 3344444332 5689999999998542211 111222222222
Q ss_pred --H--cCCCcEEEeecc--CCCCHHHHHHHHHHHHhhcCC
Q 028654 148 --S--KGNIPYFETSAK--EGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 148 --~--~~~~~~~~~s~~--~~~~i~~l~~~i~~~~~~~~~ 181 (206)
. ....+++.+|+. .+.|+..+.+.|...+++...
T Consensus 149 ~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 149 LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 1 223578999998 578999999999999987543
No 233
>PLN03127 Elongation factor Tu; Provisional
Probab=99.79 E-value=4.1e-18 Score=133.23 Aligned_cols=162 Identities=17% Similarity=0.120 Sum_probs=102.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC------CC----------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNR------KF----------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 69 (206)
.+.++|+++|+.++|||||+++|.+. .. ..+..++.+.+. ....+.....++.|+||||+..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCccc
Confidence 45789999999999999999999632 10 112223333333 3344444456889999999988
Q ss_pred cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcceec-HHHHHHHHH
Q 028654 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVVS-EKKAKAWCA 147 (206)
Q Consensus 70 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~-~~~~~~~~~ 147 (206)
+...+...+..+|++++|+|+.+....+. ...+..+.. . ++| +++++||+|+.+....... .+++..+..
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~-~------gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~ 208 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ-V------GVPSLVVFLNKVDVVDDEELLELVEMELRELLS 208 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH-c------CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 87777777788999999999976432221 122222211 1 678 5789999999753211111 123333333
Q ss_pred Hc----CCCcEEEeecc---CCCC-------HHHHHHHHHHHHh
Q 028654 148 SK----GNIPYFETSAK---EGFN-------VEAAFECIAKNAL 177 (206)
Q Consensus 148 ~~----~~~~~~~~s~~---~~~~-------i~~l~~~i~~~~~ 177 (206)
.. ..++++++|+. ++.| +..|++.|.+.++
T Consensus 209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 32 13788888875 4444 6777777777654
No 234
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.79 E-value=3e-18 Score=122.26 Aligned_cols=113 Identities=20% Similarity=0.162 Sum_probs=78.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC----------------CcccccceeeEEEEEEeC--------CeEEEEEEeeCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSN----------------QYKATIGADFLTKEVQFE--------DRLFTLQIWDTA 65 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 65 (206)
+|+++|+.++|||||+.+|+...... +.....+.......+.+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 78999999999999999997543210 111112222212222332 346889999999
Q ss_pred CccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (206)
Q Consensus 66 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 130 (206)
|+.++......++..+|++++|+|+.+....+.. ..+..... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~-------~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK-------ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECCCcc
Confidence 9999999999999999999999999976544432 22222211 167999999999986
No 235
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.4e-19 Score=114.75 Aligned_cols=164 Identities=20% Similarity=0.288 Sum_probs=116.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
...+|+++|..|+||||+..++.-... ....|+.+... ..+.+ +++.+++||..|+...+..|+.|+.+.|++||
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnv--e~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNV--ETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCc--ccccc--ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 467999999999999999877754443 23345544333 33333 55899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|+|.+|.+........+..+ ..+....+..+++++||.|......+.+....+..-......+.++.+||.+|+|++
T Consensus 92 VVDssd~dris~a~~el~~m---L~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSM---LQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEeccchhhhhhhHHHHHHH---hccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 99999987665543322222 233333356788999999987643222222222222222333789999999999999
Q ss_pred HHHHHHHHHHhh
Q 028654 167 AAFECIAKNALK 178 (206)
Q Consensus 167 ~l~~~i~~~~~~ 178 (206)
..++|+.+.+..
T Consensus 169 ~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 169 PAMDWLQRPLKS 180 (182)
T ss_pred HHHHHHHHHHhc
Confidence 999999987754
No 236
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.79 E-value=4.7e-19 Score=137.05 Aligned_cols=168 Identities=20% Similarity=0.236 Sum_probs=123.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..+||+++|..|+||||||-++....+.+...+-....... ..+....+...++|++...+.+......++.||++++
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 47999999999999999999999988875444332221112 3344444568899999877777777888999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcC-CCcEEEeeccCCCC
Q 028654 87 VYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-NIPYFETSAKEGFN 164 (206)
Q Consensus 87 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 164 (206)
+|+.+++++.+.+ .+|+..+...... .-++|+|+|+||+|........... ....+...+. .-.+++|||++..+
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~--~~~~PVILvGNK~d~~~~~~~s~e~-~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGD--YHETPVILVGNKSDNGDNENNSDEV-NTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCC--CccCCEEEEeeccCCccccccchhH-HHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 9999999999998 5677777665422 2278999999999998653331111 1222222222 23579999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 028654 165 VEAAFECIAKNALKN 179 (206)
Q Consensus 165 i~~l~~~i~~~~~~~ 179 (206)
+.++|+...++++..
T Consensus 163 ~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 163 VSELFYYAQKAVIHP 177 (625)
T ss_pred hHhhhhhhhheeecc
Confidence 999999999887653
No 237
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.78 E-value=4.5e-19 Score=138.66 Aligned_cols=153 Identities=18% Similarity=0.249 Sum_probs=101.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCcccccceeeEEEEEEeC
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS-------------------------------NQYKATIGADFLTKEVQFE 53 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 53 (206)
..+.++|+++|+.++|||||+.+|+..... .+..... ++......+.
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGi--Ti~~~~~~~~ 81 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGI--TIDIALWKFE 81 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCc--eEEEEEEEec
Confidence 345789999999999999999988742110 1112222 2223333344
Q ss_pred CeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHH-------HHHHHHHHHHHhcCCCCCCCCc-EEEEee
Q 028654 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFD-------NLNNWREEFLIQASPSDPENFP-FVVLGN 125 (206)
Q Consensus 54 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~p-viiv~n 125 (206)
.....+.++|+||+++|...+...+..+|++|+|+|+++.. ++ ...+.+.... .. ++| +++++|
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~-~~------gi~~iIV~vN 153 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAF-TL------GVKQMICCCN 153 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHH-Hc------CCCcEEEEEE
Confidence 45578899999999999999999999999999999998631 11 1222212111 11 564 788999
Q ss_pred CCCCCCCCc----ceecHHHHHHHHHHcC----CCcEEEeeccCCCCHHH
Q 028654 126 KTDVDGGNS----RVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEA 167 (206)
Q Consensus 126 K~D~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~ 167 (206)
|+|+....- .....+++..+....+ .++++++|+++|+|+.+
T Consensus 154 KmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 154 KMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 999862110 1123455666666554 37899999999999853
No 238
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=8.5e-18 Score=129.63 Aligned_cols=164 Identities=20% Similarity=0.199 Sum_probs=122.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCC-eEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
++=|.++|+...|||||+..+-+........-..|..+....+..+. ....+.|+|||||+.|..+...-.+-+|.+|+
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL 84 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL 84 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence 45678999999999999999988887766667777777777777652 34588999999999999999888889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH--HHHH-cCCCcEEEeeccCCC
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA--WCAS-KGNIPYFETSAKEGF 163 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~s~~~~~ 163 (206)
|+++++.-..+..... .... . .+.|+++++||+|.++.+...+..+..+. .... .+...++++||++|+
T Consensus 85 VVa~dDGv~pQTiEAI-~hak-~------a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 85 VVAADDGVMPQTIEAI-NHAK-A------AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEccCCcchhHHHHH-HHHH-H------CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 9999984333332221 1111 1 18899999999999976554444443332 1112 235789999999999
Q ss_pred CHHHHHHHHHHHHhhc
Q 028654 164 NVEAAFECIAKNALKN 179 (206)
Q Consensus 164 ~i~~l~~~i~~~~~~~ 179 (206)
|+++|++.|+-.+-..
T Consensus 157 Gi~eLL~~ill~aev~ 172 (509)
T COG0532 157 GIDELLELILLLAEVL 172 (509)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999988765444
No 239
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.78 E-value=5.1e-18 Score=132.52 Aligned_cols=168 Identities=13% Similarity=0.127 Sum_probs=109.1
Q ss_pred ccceeeEEEEEcCCCCCHHHHHHHHhcCCC---CCCcccccceeeEEEEE---------------EeCC-----------
Q 028654 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKF---SNQYKATIGADFLTKEV---------------QFED----------- 54 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~----------- 54 (206)
.++..++|+++|+...|||||+.+|++... ..+.....+.+...... .+..
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 356789999999999999999999997432 22222222211111000 0000
Q ss_pred -----eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654 55 -----RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (206)
Q Consensus 55 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 128 (206)
....+.|+|+||++.|...+...+..+|++++|+|+.+.. ..+.. +.+. +..... -.++++|+||+|
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl~-i~~~lg-----i~~iIVvlNKiD 182 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHLA-AVEIMK-----LKHIIILQNKID 182 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHHH-HHHHcC-----CCcEEEEEeccc
Confidence 0236889999999999888888889999999999998631 22221 2222 122211 125899999999
Q ss_pred CCCCCcceecHHHHHHHHHH--cCCCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654 129 VDGGNSRVVSEKKAKAWCAS--KGNIPYFETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
+.+........+++..+... ....+++++||++|.|++.|++.|.+.++.
T Consensus 183 lv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 183 LVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred ccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 97532222333444444332 135799999999999999999999986654
No 240
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.77 E-value=1.2e-17 Score=131.79 Aligned_cols=155 Identities=19% Similarity=0.124 Sum_probs=96.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc---------------------------------ccccceeeEEEEEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY---------------------------------KATIGADFLTKEVQ 51 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~---------------------------------~~~~~~~~~~~~~~ 51 (206)
....++|+++|+.++|||||+++|+........ ....+.+. ....
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~--~~~~ 101 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDV--AYRY 101 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEe--eEEE
Confidence 356799999999999999999999754321110 11112222 2222
Q ss_pred eCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCC
Q 028654 52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (206)
Q Consensus 52 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 131 (206)
+.....++.|+||||+..|...+...+..+|++++|+|+...-.......+ .+..... ..++++++||+|+..
T Consensus 102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~lg-----~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLLG-----IKHLVVAVNKMDLVD 174 (474)
T ss_pred eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHhC-----CCceEEEEEeecccc
Confidence 333346789999999988877777778899999999999764221111111 1111111 236899999999975
Q ss_pred CCcc--eecHHHHHHHHHHc---CCCcEEEeeccCCCCHHHH
Q 028654 132 GNSR--VVSEKKAKAWCASK---GNIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 132 ~~~~--~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~i~~l 168 (206)
.... ....+++..+.... ...+++++|+++|.|+.++
T Consensus 175 ~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 175 YSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred chhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 3211 11112222333332 2478999999999999865
No 241
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.77 E-value=8.1e-18 Score=131.74 Aligned_cols=154 Identities=17% Similarity=0.204 Sum_probs=98.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCcccccceeeEEEEEEeC
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFE 53 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 53 (206)
..+.++|+++|+.++|||||+.+|+.... ..+.....+.+. ....+.
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~--~~~~~~ 81 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDI--ALWKFE 81 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEe--eeEEEc
Confidence 34578999999999999999999875211 011122223333 333344
Q ss_pred CeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhh---H---HHHHHHHHHHHHhcCCCCCCCCc-EEEEeeC
Q 028654 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS---F---DNLNNWREEFLIQASPSDPENFP-FVVLGNK 126 (206)
Q Consensus 54 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK 126 (206)
.....+.|+||||+.+|...+...+..+|++++|+|+..... + ....+.+..+.. . ++| +|+++||
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~------gi~~iiv~vNK 154 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-L------GVKQMIVCINK 154 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-c------CCCeEEEEEEc
Confidence 445788999999999999888888999999999999986420 0 111121122211 1 656 6799999
Q ss_pred CCCCC--C--CcceecHHHHHHHHHHcC----CCcEEEeeccCCCCHHH
Q 028654 127 TDVDG--G--NSRVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEA 167 (206)
Q Consensus 127 ~D~~~--~--~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~ 167 (206)
+|... . .......+++..+....+ .++++++|+.+|+|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 155 MDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 99542 1 111222334444444332 37899999999999864
No 242
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.77 E-value=3.7e-18 Score=121.75 Aligned_cols=175 Identities=19% Similarity=0.273 Sum_probs=108.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc-----cccceecCcE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-----GVAFYRGADC 83 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~~~~~~d~ 83 (206)
||+++|+.+|||||+.+.++.+-.+. ...-..|.+.....+... ..+.+.+||+||+..+... ....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 78999999999999999998775432 222223344444444322 2358999999998755443 4567899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHH----HHHcC--CCcEEEe
Q 028654 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW----CASKG--NIPYFET 157 (206)
Q Consensus 84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~ 157 (206)
+|||+|+.+.+-.+.+.++...+...... .++..+.+++.|+|+.....+....+...+. +...+ ...++.|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~T 157 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLT 157 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEec
Confidence 99999998544444444433333322211 2277899999999998765454444443332 22222 2678888
Q ss_pred eccCCCCHHHHHHHHHHHHhhcCCCCCCCCC
Q 028654 158 SAKEGFNVEAAFECIAKNALKNEPQEEDYLP 188 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~ 188 (206)
|..+ ..+-+.+..|++.+..+.+.-+..+.
T Consensus 158 SI~D-~Sly~A~S~Ivq~LiP~~~~le~~L~ 187 (232)
T PF04670_consen 158 SIWD-ESLYEAWSKIVQKLIPNLSTLENLLN 187 (232)
T ss_dssp -TTS-THHHHHHHHHHHTTSTTHCCCCCCCC
T ss_pred cCcC-cHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 8887 59999999999999887777555543
No 243
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1.8e-17 Score=121.21 Aligned_cols=167 Identities=17% Similarity=0.129 Sum_probs=117.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc----cccccc---eecC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----SLGVAF---YRGA 81 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~~---~~~~ 81 (206)
.-|.++|.|++|||||++.+..........+.+|.......+.+ ...-.+.+-|.||--+-. -+-..+ +..+
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 45779999999999999999998877777888888777777776 333468888999932211 122233 3568
Q ss_pred cEEEEEEECCChh---hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654 82 DCCVLVYDVNVMK---SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (206)
Q Consensus 82 d~vi~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (206)
.++++|+|++..+ ..++......++..+-... .+.|.+||+||+|+..+ .....+..+.+........++.+|
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L--~~K~~ivv~NKiD~~~~--~e~~~~~~~~l~~~~~~~~~~~IS 314 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKL--AEKPRIVVLNKIDLPLD--EEELEELKKALAEALGWEVFYLIS 314 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHh--ccCceEEEEeccCCCcC--HHHHHHHHHHHHHhcCCCcceeee
Confidence 8999999998644 3555666666666653322 26799999999997654 223333333334444433333399
Q ss_pred ccCCCCHHHHHHHHHHHHhhcC
Q 028654 159 AKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 159 ~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
+.++.|++++...+.+.+.+..
T Consensus 315 a~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 315 ALTREGLDELLRALAELLEETK 336 (369)
T ss_pred hhcccCHHHHHHHHHHHHHHhh
Confidence 9999999999999999887765
No 244
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.76 E-value=3.4e-17 Score=120.26 Aligned_cols=116 Identities=22% Similarity=0.238 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcc---------c-----------ccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYK---------A-----------TIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 68 (206)
.+|+++|++|+|||||+++|+......... . ..+.++......+......+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 589999999999999999997532110000 0 01122333333444455789999999999
Q ss_pred ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
++.......++.+|++++|+|+++..... ...++..... .++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~-------~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL-------RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh-------cCCCEEEEEECCccCCC
Confidence 88877777889999999999998643221 2233322211 17799999999998765
No 245
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.76 E-value=1.3e-17 Score=122.63 Aligned_cols=140 Identities=16% Similarity=0.105 Sum_probs=88.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC------------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 71 (206)
+|+++|++++|||||+++|+..... .+.....+.......+.+.+ .++.++||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 5899999999999999999742211 11222333333334444443 678899999998888
Q ss_pred cccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC
Q 028654 72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN 151 (206)
Q Consensus 72 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
..+..+++.+|++++|+|+.+...... ...+..+.. .++|+++++||+|+.+.. .....++++........
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~-------~~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~~~~~ 149 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR-------YNVPRIAFVNKMDRTGAD-FFRVVEQIREKLGANPV 149 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCce
Confidence 888889999999999999986432222 222222221 167999999999987642 12223344433332222
Q ss_pred CcEEEeecc
Q 028654 152 IPYFETSAK 160 (206)
Q Consensus 152 ~~~~~~s~~ 160 (206)
...+++|+.
T Consensus 150 ~~~~Pisa~ 158 (270)
T cd01886 150 PLQLPIGEE 158 (270)
T ss_pred EEEeccccC
Confidence 345666665
No 246
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.76 E-value=3.5e-17 Score=120.77 Aligned_cols=146 Identities=14% Similarity=0.157 Sum_probs=91.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------cccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc----
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQ----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---- 72 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---- 72 (206)
..++|+++|.+|+|||||+|+|++..+... ..++.+.......+..++..+.+.+|||||..+...
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998876533 233334444555566677788999999999322110
Q ss_pred ----------------------cccccee--cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654 73 ----------------------LGVAFYR--GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (206)
Q Consensus 73 ----------------------~~~~~~~--~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 128 (206)
.....+. .+|+++|+++.+.......-..++..+ .. ++|+++|+||+|
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l----~~----~v~vi~VinK~D 154 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRL----SK----RVNIIPVIAKAD 154 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHH----hc----cCCEEEEEECCC
Confidence 0102222 478899999877421111102222222 11 578999999999
Q ss_pred CCCCCcceecHHHHHHHHHHcCCCcEEEeeccC
Q 028654 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161 (206)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 161 (206)
+..........+.+...+...+ ++++......
T Consensus 155 ~l~~~e~~~~k~~i~~~l~~~~-i~~~~~~~~~ 186 (276)
T cd01850 155 TLTPEELKEFKQRIMEDIEEHN-IKIYKFPEDE 186 (276)
T ss_pred cCCHHHHHHHHHHHHHHHHHcC-CceECCCCCc
Confidence 9754333344445555556655 7778766543
No 247
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=3.1e-17 Score=124.50 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=127.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCcccccceeeEEEEEEe---CCeEEEEEEeeCCCc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF---------------SNQYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 67 (206)
.+..+..++-+-..|||||..+++.... ..+...+.|.......+.+ ++..+.+.++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 3456788999999999999999976432 1234445555555555544 457899999999999
Q ss_pred cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH
Q 028654 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA 147 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~ 147 (206)
.+|.-.....+..|.++++++|++..-.-+.++..+..+.. +.-++.|+||+||+.++...+ .++++...-
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~--------~LeIiPViNKIDLP~Adperv-k~eIe~~iG 157 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--------NLEIIPVLNKIDLPAADPERV-KQEIEDIIG 157 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc--------CcEEEEeeecccCCCCCHHHH-HHHHHHHhC
Confidence 99998888899999999999999975545555555555532 667999999999987743332 222332221
Q ss_pred HcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCCCCCCCCCc
Q 028654 148 SKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPD 189 (206)
Q Consensus 148 ~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~ 189 (206)
......+.+||++|.|++++++.|++.++.....+..++..
T Consensus 158 -id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pLkA 198 (603)
T COG0481 158 -IDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPLKA 198 (603)
T ss_pred -CCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcceE
Confidence 22356789999999999999999999999877665555443
No 248
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.76 E-value=1.6e-17 Score=129.09 Aligned_cols=150 Identities=19% Similarity=0.161 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC---------------------------------CcccccceeeEEEEEEeCCe
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSN---------------------------------QYKATIGADFLTKEVQFEDR 55 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~ 55 (206)
++|+++|+.++|||||+++|+...... +.....+.+..... +...
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~--~~~~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRY--FSTD 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEE--EccC
Confidence 589999999999999999997433211 11111222222222 2233
Q ss_pred EEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcc
Q 028654 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR 135 (206)
Q Consensus 56 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~ 135 (206)
...+.|+||||+++|...+...+..+|++++|+|+......+....+ . +..... ..++++++||+|+......
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~-~~~~~~-----~~~iivviNK~D~~~~~~~ 151 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-Y-IASLLG-----IRHVVLAVNKMDLVDYDEE 151 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-H-HHHHcC-----CCcEEEEEEecccccchHH
Confidence 45788999999999887777788999999999999864322221111 1 111111 2258899999999753211
Q ss_pred --eecHHHHHHHHHHcC--CCcEEEeeccCCCCHHH
Q 028654 136 --VVSEKKAKAWCASKG--NIPYFETSAKEGFNVEA 167 (206)
Q Consensus 136 --~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~i~~ 167 (206)
....+++..+....+ ..+++++||.+|+|+++
T Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 011223333333333 36799999999999886
No 249
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.76 E-value=6.7e-17 Score=120.95 Aligned_cols=166 Identities=16% Similarity=0.158 Sum_probs=102.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEe---------------------CC-eEEEEEEeeCCCc-
Q 028654 11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF---------------------ED-RLFTLQIWDTAGQ- 67 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~i~D~~G~- 67 (206)
|+++|.+++|||||+|+|++........+.++.+.......+ ++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999998765444444443333322221 22 3467999999996
Q ss_pred ---ccccccccc---ceecCcEEEEEEECCCh-------------hhHHHHHHHHHH---------------HH------
Q 028654 68 ---ERFQSLGVA---FYRGADCCVLVYDVNVM-------------KSFDNLNNWREE---------------FL------ 107 (206)
Q Consensus 68 ---~~~~~~~~~---~~~~~d~vi~v~d~~~~-------------~~~~~~~~~~~~---------------~~------ 107 (206)
++....... .++.+|++++|+|++.. +...++.....+ +.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333233 47899999999999731 111111110000 00
Q ss_pred -----------------------HhcCC-C--------------------CCCCCcEEEEeeCCCCCCCCcceecHHHHH
Q 028654 108 -----------------------IQASP-S--------------------DPENFPFVVLGNKTDVDGGNSRVVSEKKAK 143 (206)
Q Consensus 108 -----------------------~~~~~-~--------------------~~~~~pviiv~nK~D~~~~~~~~~~~~~~~ 143 (206)
..+.. . ....+|+++|+||+|+.... . ...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~---~---~~~ 234 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAE---N---NIS 234 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChH---H---HHH
Confidence 00000 0 01246999999999975321 1 112
Q ss_pred HHHHHcCCCcEEEeeccCCCCHHHHHH-HHHHHHhhcCCC
Q 028654 144 AWCASKGNIPYFETSAKEGFNVEAAFE-CIAKNALKNEPQ 182 (206)
Q Consensus 144 ~~~~~~~~~~~~~~s~~~~~~i~~l~~-~i~~~~~~~~~~ 182 (206)
.+........++++||+.+.+++++.+ .+.+.+++.++.
T Consensus 235 ~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f 274 (318)
T cd01899 235 KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDF 274 (318)
T ss_pred HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCc
Confidence 222233346899999999999999998 699998876554
No 250
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.73 E-value=1.9e-16 Score=126.10 Aligned_cols=118 Identities=21% Similarity=0.216 Sum_probs=78.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------cccccceeeEEEEEEeCCeEEEEEEeeCCC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQ--------------------YKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 66 (206)
...+|+++|+.++|||||.++|+....... .....+.++......+......+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 457999999999999999999964211000 000112223233333333447889999999
Q ss_pred ccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 67 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
+.++......++..+|++|+|+|+++..... ...++..... .++|+++++||+|+...
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~-------~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL-------RDTPIFTFINKLDRDGR 146 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh-------cCCCEEEEEECCccccc
Confidence 9998887788889999999999998743221 2233322211 27899999999998653
No 251
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=2.7e-17 Score=117.13 Aligned_cols=166 Identities=16% Similarity=0.265 Sum_probs=110.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEE-EeCCeEEEEEEeeCCCcc-------ccccccccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEV-QFEDRLFTLQIWDTAGQE-------RFQSLGVAF 77 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~-------~~~~~~~~~ 77 (206)
..+++|+++|.+|+|||||+|+|+++...+...-..+.+...... .+++ -.+.+||+||-. +++.....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 467899999999999999999999765443222222222222222 2333 478899999933 366667788
Q ss_pred eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc-------------ceecHHHHH-
Q 028654 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS-------------RVVSEKKAK- 143 (206)
Q Consensus 78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-------------~~~~~~~~~- 143 (206)
+.+.|.+++++++.++.--.+ .+++..+..... +.++++++|.+|...+.. ++...+...
T Consensus 115 l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~-----~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~ 188 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTD-EDFLRDVIILGL-----DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEA 188 (296)
T ss_pred hhhccEEEEeccCCCccccCC-HHHHHHHHHhcc-----CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHH
Confidence 899999999999998654333 344444443332 468999999999765410 111222222
Q ss_pred --HHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 144 --AWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 144 --~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
.+++.- .|++..+...+.|++.+...++.+++....
T Consensus 189 ~~~~~q~V--~pV~~~~~r~~wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 189 LGRLFQEV--KPVVAVSGRLPWGLKELVRALITALPVEAR 226 (296)
T ss_pred HHHHHhhc--CCeEEeccccCccHHHHHHHHHHhCccccc
Confidence 233332 467777889999999999999998875443
No 252
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=2.4e-17 Score=119.47 Aligned_cols=190 Identities=17% Similarity=0.146 Sum_probs=129.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC---CCCCcccccceeeEEEEE--------------------EeC----CeEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGADFLTKEV--------------------QFE----DRLFT 58 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~--------------------~~~----~~~~~ 58 (206)
+..++|.++|+..-|||||..+|.+-- +..+.....+........ ... .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 678999999999999999999998732 111111111111100000 000 11346
Q ss_pred EEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceec
Q 028654 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS 138 (206)
Q Consensus 59 ~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~ 138 (206)
+.|+|.||++-+-..+.+-..-.|++++|+.++.+.......+.+..+.-.- -..++++-||+|+.......+.
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig------ik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG------IKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc------cceEEEEecccceecHHHHHHH
Confidence 7899999999988888888888999999999998655444444444443221 2258999999999987666777
Q ss_pred HHHHHHHHHHc--CCCcEEEeeccCCCCHHHHHHHHHHHHhhcCCCCCCCCCccccCCCCCccCCCC
Q 028654 139 EKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSG 203 (206)
Q Consensus 139 ~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (206)
++++.+|.+.. .+.|++++||..+.|++.|++.|.+.++.... ....|..+-+-.+++..|.|
T Consensus 162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r--d~~~~p~m~v~RSFDVNkPG 226 (415)
T COG5257 162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER--DLDKPPRMYVARSFDVNKPG 226 (415)
T ss_pred HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc--CCCCCceEEEEeecccCCCC
Confidence 88888887653 35899999999999999999999999887444 33344444444444444443
No 253
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.72 E-value=1.7e-17 Score=126.46 Aligned_cols=168 Identities=15% Similarity=0.056 Sum_probs=120.1
Q ss_pred ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc------ccccc-
Q 028654 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVA- 76 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~- 76 (206)
...+...++++|.|++|||||+|.+...+....+.++++.......+.+ +...++++||||.-... ..+..
T Consensus 164 IDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy--kYlrwQViDTPGILD~plEdrN~IEmqsI 241 (620)
T KOG1490|consen 164 IDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY--KYLRWQVIDTPGILDRPEEDRNIIEMQII 241 (620)
T ss_pred CCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh--heeeeeecCCccccCcchhhhhHHHHHHH
Confidence 3455678999999999999999999999888888888877666555443 34678899999922111 11111
Q ss_pred -ce-ecCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCC
Q 028654 77 -FY-RGADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI 152 (206)
Q Consensus 77 -~~-~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 152 (206)
++ +--.+|+|++|++..+ +...-..+++.+...+. |.|+|+|+||+|...........+++-+.....+++
T Consensus 242 TALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-----NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v 316 (620)
T KOG1490|consen 242 TALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-----NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV 316 (620)
T ss_pred HHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-----CCceEEEeecccccCccccCHHHHHHHHHHHhccCc
Confidence 11 2245899999999754 44555667777877776 789999999999987644444343444444455569
Q ss_pred cEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654 153 PYFETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 153 ~~~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
+++++|..+.+|+.++.....++++.
T Consensus 317 ~v~~tS~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 317 KVVQTSCVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred eEEEecccchhceeeHHHHHHHHHHH
Confidence 99999999999998877766665543
No 254
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.72 E-value=8.3e-17 Score=131.66 Aligned_cols=153 Identities=20% Similarity=0.148 Sum_probs=94.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------------------------------cccccceeeEEEEEEe
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ---------------------------------YKATIGADFLTKEVQF 52 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~ 52 (206)
...++|+++|++++|||||+++|+....... ...+.+.+..... +
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~--~ 99 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY--F 99 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE--E
Confidence 4568999999999999999999986432211 0011111121122 2
Q ss_pred CCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 53 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
......+.|+||||++.+...+...+..+|++++|+|+......+.. ..+..+. ... ..++++++||+|+...
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~-e~~~~~~-~~~-----~~~iivvvNK~D~~~~ 172 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR-RHSFIAS-LLG-----IRHVVLAVNKMDLVDY 172 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH-HHHHHHH-HhC-----CCeEEEEEEecccccc
Confidence 22335778999999988877677778899999999999764322111 1111111 111 2468899999999752
Q ss_pred Ccc--eecHHHHHHHHHHcC--CCcEEEeeccCCCCHHH
Q 028654 133 NSR--VVSEKKAKAWCASKG--NIPYFETSAKEGFNVEA 167 (206)
Q Consensus 133 ~~~--~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~i~~ 167 (206)
... ....+++..+....+ ..+++++||++|.|+.+
T Consensus 173 ~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 173 DQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 111 111223333333333 35799999999999874
No 255
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.9e-16 Score=121.08 Aligned_cols=161 Identities=23% Similarity=0.204 Sum_probs=118.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
.+.-|-++|+..-|||||+..|-+..+......+.+..+....+.... .-.++|+||||+..|..+...-..-+|++++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-GKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-CCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 355678999999999999999988877666666666666666666663 3689999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH--HHHH-cCCCcEEEeeccCCC
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA--WCAS-KGNIPYFETSAKEGF 163 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~s~~~~~ 163 (206)
|+.+.|.-..+..+.. +++. ..+.|+++.+||+|.++.+...+..+.... .... .++..++++||++|+
T Consensus 231 VVAadDGVmpQT~EaI-----khAk---~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 231 VVAADDGVMPQTLEAI-----KHAK---SANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred EEEccCCccHhHHHHH-----HHHH---hcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 9999884333322111 1111 128899999999998876433332222221 1112 346889999999999
Q ss_pred CHHHHHHHHHHHH
Q 028654 164 NVEAAFECIAKNA 176 (206)
Q Consensus 164 ~i~~l~~~i~~~~ 176 (206)
|++.|-+.++-.+
T Consensus 303 nl~~L~eaill~A 315 (683)
T KOG1145|consen 303 NLDLLEEAILLLA 315 (683)
T ss_pred ChHHHHHHHHHHH
Confidence 9999999887655
No 256
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.72 E-value=1.3e-17 Score=114.05 Aligned_cols=120 Identities=22% Similarity=0.295 Sum_probs=76.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEe-CCeEEEEEEeeCCCccccccccccc---eecCcEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAF---YRGADCC 84 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~---~~~~d~v 84 (206)
-.|+++|+.|||||+|+..|..+.......+. .. .....+ ......+.++|+||+.+.+...... ...+.++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~-n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---EN-NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S---SE-EEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cC-CceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 47899999999999999999988543322222 11 111112 1233467889999999988755554 7789999
Q ss_pred EEEEECCC-hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC
Q 028654 85 VLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN 133 (206)
Q Consensus 85 i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~ 133 (206)
|||+|.+. ......+++++..+....... ....|++|+.||.|+..+.
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT--
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCccccccC
Confidence 99999974 455666777777766554422 3378999999999998653
No 257
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.72 E-value=2.2e-16 Score=102.26 Aligned_cols=106 Identities=20% Similarity=0.272 Sum_probs=69.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc---------cccccccee
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVAFYR 79 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~ 79 (206)
+|+++|.+|+|||||+|+|++... .....+..+.......+.+.+. .+.++||||-..- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999998643 2333344444444455556663 4569999993211 111233347
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeC
Q 028654 80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126 (206)
Q Consensus 80 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK 126 (206)
.+|++++|+|++++.. +....++..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~--------~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK--------NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH--------TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh--------cCCCEEEEEcC
Confidence 8999999999876322 22233333331 17799999998
No 258
>PRK13351 elongation factor G; Reviewed
Probab=99.71 E-value=1.5e-16 Score=131.52 Aligned_cols=116 Identities=19% Similarity=0.193 Sum_probs=81.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC------------------CcccccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN------------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 68 (206)
...+|+++|+.++|||||+++|+...... ......+.......+.+. ...+.+|||||+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~ 84 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--NHRINLIDTPGHI 84 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--CEEEEEEECCCcH
Confidence 46799999999999999999998532110 001111222222233333 4788999999999
Q ss_pred ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
++...+..+++.+|++++|+|+++.........| ..+.. .++|+++|+||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~-------~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR-------YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh-------cCCCEEEEEECCCCCCC
Confidence 9888888899999999999999876555443333 22221 16799999999998754
No 259
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.71 E-value=3e-16 Score=115.99 Aligned_cols=154 Identities=19% Similarity=0.258 Sum_probs=95.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCc------------------ccccceeeEEEEEEeCCeEEEEEEeeCCCccccc
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQY------------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 71 (206)
+|+++|++|+|||||+++|+........ ....+.......+.+. ...+.+|||||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence 5899999999999999998753321100 0111122222233333 3678899999998887
Q ss_pred cccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC
Q 028654 72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN 151 (206)
Q Consensus 72 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
..+..++..+|++++|+|+++.........| ..+.. .++|+++++||+|+.... ..+....+....+
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~-------~~~p~iivvNK~D~~~~~----~~~~~~~l~~~~~- 145 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE-------AGIPRIIFINKMDRERAD----FDKTLAALQEAFG- 145 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH-------cCCCEEEEEECCccCCCC----HHHHHHHHHHHhC-
Confidence 7788889999999999999875544332222 22221 167999999999987642 2233344444443
Q ss_pred CcE--EEeeccCCCCHHHHHHHHHHHHhh
Q 028654 152 IPY--FETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 152 ~~~--~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
.++ +.+...++.++..+.+.+...++.
T Consensus 146 ~~~~~~~ip~~~~~~~~~~vd~~~~~~~~ 174 (268)
T cd04170 146 RPVVPLQLPIGEGDDFKGVVDLLTEKAYI 174 (268)
T ss_pred CCeEEEEecccCCCceeEEEEcccCEEEE
Confidence 333 334456666666665555554443
No 260
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.71 E-value=5.6e-16 Score=109.44 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCc--ccccceeeEEEEEEeCCeEEEEEEeeCCCccccc-------cc----cc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQY--KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SL----GV 75 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~----~~ 75 (206)
++|+++|.+|+|||||+|++++....... .+..+.........+.+ ..+.++||||-.+.. .. ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999987654222 22333333333444444 578899999943321 11 11
Q ss_pred cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee----cHHHHHHHHHHcCC
Q 028654 76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV----SEKKAKAWCASKGN 151 (206)
Q Consensus 76 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~ 151 (206)
.....+|++++|+++.. -+.. -...+..+...+.... ..++++|.|+.|......... ....+..+....+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~--~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~- 153 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKV--LDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG- 153 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHh--HhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC-
Confidence 22356899999999886 2222 1233344444332111 247899999999765421111 1133444445544
Q ss_pred CcEEEee-----ccCCCCHHHHHHHHHHHHhhcCC
Q 028654 152 IPYFETS-----AKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 152 ~~~~~~s-----~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
..++..+ +.++.++++|++.|.+.+.++.+
T Consensus 154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~ 188 (196)
T cd01852 154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKENGG 188 (196)
T ss_pred CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence 3444444 34567899999999999887443
No 261
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.71 E-value=4.1e-16 Score=120.11 Aligned_cols=170 Identities=19% Similarity=0.224 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEe---------------------C-CeEEEEEEeeCCC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF---------------------E-DRLFTLQIWDTAG 66 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~G 66 (206)
++|+++|.+++|||||+|+|++........+.++.+.......+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 58999999999999999999988765444455554444433221 1 1236789999999
Q ss_pred c----cccccccccc---eecCcEEEEEEECCCh-------------hhHHHH-------HHH--------HHHHHHh--
Q 028654 67 Q----ERFQSLGVAF---YRGADCCVLVYDVNVM-------------KSFDNL-------NNW--------REEFLIQ-- 109 (206)
Q Consensus 67 ~----~~~~~~~~~~---~~~~d~vi~v~d~~~~-------------~~~~~~-------~~~--------~~~~~~~-- 109 (206)
. .....+...+ ++.+|++++|+|+... +...++ ..| +..+.+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~ 161 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ 161 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3 2222222233 7889999999999721 111111 010 0001110
Q ss_pred ---------------------------cCCC---------------------CCCCCcEEEEeeCCCCCCCCcceecHHH
Q 028654 110 ---------------------------ASPS---------------------DPENFPFVVLGNKTDVDGGNSRVVSEKK 141 (206)
Q Consensus 110 ---------------------------~~~~---------------------~~~~~pviiv~nK~D~~~~~~~~~~~~~ 141 (206)
+... ....+|+++|+||.|+.... ...+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~---~~l~~ 238 (396)
T PRK09602 162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAE---ENIER 238 (396)
T ss_pred cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccch---HHHHH
Confidence 0000 01246999999999975321 11222
Q ss_pred HHHHHHHcCCCcEEEeeccCCCCHHH-HHHHHHHHHhhcCCCCCC
Q 028654 142 AKAWCASKGNIPYFETSAKEGFNVEA-AFECIAKNALKNEPQEED 185 (206)
Q Consensus 142 ~~~~~~~~~~~~~~~~s~~~~~~i~~-l~~~i~~~~~~~~~~~~~ 185 (206)
+.+ . +...++++||+.+.++++ +.+.+.+.+++.++..++
T Consensus 239 i~~---~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~ 279 (396)
T PRK09602 239 LKE---E-KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEIL 279 (396)
T ss_pred HHh---c-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCcc
Confidence 222 2 447799999999999999 889999888887766444
No 262
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.2e-16 Score=108.12 Aligned_cols=164 Identities=18% Similarity=0.269 Sum_probs=110.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccccccee---cC
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR---GA 81 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~ 81 (206)
+.++-.|+++|+.+||||+|+-.|..+.+.... ++.........+... ..+++|.||+.+.+.....+++ .+
T Consensus 35 rs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~a 109 (238)
T KOG0090|consen 35 RSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSA 109 (238)
T ss_pred hccCCcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccc
Confidence 445568999999999999999998877433221 112222333333332 3788999999998887777777 68
Q ss_pred cEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH----HH----------
Q 028654 82 DCCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA----WC---------- 146 (206)
Q Consensus 82 d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~----~~---------- 146 (206)
-+++||+|... .....+...++..+...... .....|++++.||.|+.-+...+...+.++. ..
T Consensus 110 kaiVFVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~ 188 (238)
T KOG0090|consen 110 KAIVFVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSIS 188 (238)
T ss_pred eeEEEEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 89999999764 44556667777776655432 2236789999999998765444333332221 11
Q ss_pred --------------------HHc-CCCcEEEeeccCCCCHHHHHHHHHHH
Q 028654 147 --------------------ASK-GNIPYFETSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 147 --------------------~~~-~~~~~~~~s~~~~~~i~~l~~~i~~~ 175 (206)
.-. ..+.|.++|++.+ +++++-+||.++
T Consensus 189 ~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 189 DEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 001 2346888999888 999999999875
No 263
>PRK12739 elongation factor G; Reviewed
Probab=99.68 E-value=1.9e-15 Score=124.73 Aligned_cols=116 Identities=18% Similarity=0.109 Sum_probs=81.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 68 (206)
...+|+++|+.++|||||+++|+..... .+.....+.+.....+.+.+ .++.++||||+.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~ 84 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHV 84 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHH
Confidence 4679999999999999999999753111 11233344444444555544 678999999998
Q ss_pred ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
++...+...+..+|++++|+|+......+.. ..+..+.. .++|+++++||+|+...
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~-------~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK-------YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECCCCCCC
Confidence 8888888889999999999999875333222 22222221 16799999999998753
No 264
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=5.2e-16 Score=118.37 Aligned_cols=174 Identities=18% Similarity=0.083 Sum_probs=114.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc-ccc--------cc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQS--------LG 74 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~--------~~ 74 (206)
.+..++|+++|+||+|||||+|+|...+.. ..+.+++|.+.....++++| +.+.+.||.|..+ ... ..
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERA 342 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHH
Confidence 356789999999999999999999998876 67788888888888888888 6667789999544 111 11
Q ss_pred ccceecCcEEEEEEECC--ChhhHHHHHHHHHHHHHhcCCC--CCCCCcEEEEeeCCCCCCCCcceec--HHHHHHHHHH
Q 028654 75 VAFYRGADCCVLVYDVN--VMKSFDNLNNWREEFLIQASPS--DPENFPFVVLGNKTDVDGGNSRVVS--EKKAKAWCAS 148 (206)
Q Consensus 75 ~~~~~~~d~vi~v~d~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~pviiv~nK~D~~~~~~~~~~--~~~~~~~~~~ 148 (206)
...+..+|++++|+|+. .-++...+...+.......... .....|++++.||+|+...-..... ........ .
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~-~ 421 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEG-R 421 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccccc-C
Confidence 23457799999999993 3222223333333322211110 1124589999999998765111110 00111100 0
Q ss_pred cCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 149 KGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 149 ~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
.....+.++|+++++|++.|...+.+.+.....
T Consensus 422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred cccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 112345669999999999999999987766554
No 265
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.68 E-value=1e-15 Score=126.31 Aligned_cols=117 Identities=18% Similarity=0.083 Sum_probs=81.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC------------------CcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN------------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 67 (206)
+...+|+++|++++|||||+++|+...... ......+.+.....+.+.+ ..+.+|||||+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 85 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGH 85 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCC
Confidence 346799999999999999999997422110 1122333334344444444 68899999999
Q ss_pred cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
.++......++..+|++++|+|+.+....... .++..+.. .++|+++++||+|+...
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~-------~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR-------YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH-------cCCCEEEEEECCCCCCC
Confidence 88877788889999999999999875443332 22222221 16799999999999864
No 266
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.9e-16 Score=103.16 Aligned_cols=156 Identities=20% Similarity=0.327 Sum_probs=109.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
.-|++++|-.|+|||||++.|-..+.. .+.||. ..+...+.+.+ ..++-+|.+|+..-+..+..++..+|++++.
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTl--HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTL--HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred CceEEEEeecCCchhhHHHHHcccccc-ccCCCc--CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 458999999999999999998766533 233332 22223334444 6888899999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH------HHHH----------cCC
Q 028654 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA------WCAS----------KGN 151 (206)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~------~~~~----------~~~ 151 (206)
+|+.+.+.+.....-+..+..... ..+.|+++.+||+|.+++. +.++... +... ...
T Consensus 95 vda~d~er~~es~~eld~ll~~e~---la~vp~lilgnKId~p~a~----se~~l~~~l~l~~~t~~~~~v~~~~~~~rp 167 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDES---LATVPFLILGNKIDIPYAA----SEDELRFHLGLSNFTTGKGKVNLTDSNVRP 167 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHH---HhcCcceeecccccCCCcc----cHHHHHHHHHHHHHhcccccccccCCCCCe
Confidence 999998877665444444433222 2388999999999998763 2222221 1111 011
Q ss_pred CcEEEeeccCCCCHHHHHHHHHHH
Q 028654 152 IPYFETSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 152 ~~~~~~s~~~~~~i~~l~~~i~~~ 175 (206)
..++.+|...+.+.-+.|.|+.+.
T Consensus 168 ~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 168 LEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEEEEEccCccceeeeehhhh
Confidence 357888988888887777777654
No 267
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.67 E-value=2.7e-16 Score=125.19 Aligned_cols=119 Identities=20% Similarity=0.226 Sum_probs=79.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCC----C--------------cccccceeeEEEEEEeCCeEEEEEEeeCC
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNR--KFSN----Q--------------YKATIGADFLTKEVQFEDRLFTLQIWDTA 65 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~--~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 65 (206)
....+|+++|++++|||||+++|+.. .... . .....+.++......+......+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 34679999999999999999998532 1110 0 00011223333333444445788999999
Q ss_pred CccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 66 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
|+..+.......+..+|++++|+|+++.-. .....++.... . .+.|+++++||+|+...
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~-~------~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTR-L------RDTPIFTFMNKLDRDIR 147 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHH-h------cCCCEEEEEECccccCC
Confidence 998888777778899999999999986321 11233333221 1 16799999999998753
No 268
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.67 E-value=2.7e-16 Score=98.53 Aligned_cols=137 Identities=26% Similarity=0.344 Sum_probs=97.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCc----cccccccccceecCcEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----ERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~vi 85 (206)
||+++|..|+|||||.+.+.+.... +..|.... +..+ -.+||||. ..+-.........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve-------~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVE-------FNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccceee-------ccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7899999999999999999887532 23332222 2111 14699993 222222334457799999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
++-.++++++.-. ..+...+ ..|+|-|++|.|++++ ...+..+.|..+.+.-++|.+|+.++.|+
T Consensus 70 ~v~~and~~s~f~-----p~f~~~~------~k~vIgvVTK~DLaed----~dI~~~~~~L~eaGa~~IF~~s~~d~~gv 134 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDIG------VKKVIGVVTKADLAED----ADISLVKRWLREAGAEPIFETSAVDNQGV 134 (148)
T ss_pred eeecccCccccCC-----ccccccc------ccceEEEEecccccch----HhHHHHHHHHHHcCCcceEEEeccCcccH
Confidence 9999998765211 1122211 5579999999999853 45677888888888889999999999999
Q ss_pred HHHHHHHHH
Q 028654 166 EAAFECIAK 174 (206)
Q Consensus 166 ~~l~~~i~~ 174 (206)
+++++.+..
T Consensus 135 ~~l~~~L~~ 143 (148)
T COG4917 135 EELVDYLAS 143 (148)
T ss_pred HHHHHHHHh
Confidence 999998865
No 269
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=7.9e-16 Score=115.40 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=101.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCcccccceeeEEEEEEeCC
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFED 54 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (206)
.+.++++++|+..+|||||+-+|+.... ..++..+ .++......+..
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerG--vTi~~~~~~fet 82 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERG--VTIDVAHSKFET 82 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcc--eEEEEEEEEeec
Confidence 4568999999999999999999876422 1122222 333333444444
Q ss_pred eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChh---hHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK---SFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (206)
Q Consensus 55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 130 (206)
..+.++++|+||+.+|-..+...+..||+.|+|+|+.+.+ .+... +.-.+.++.... + -..+|+++||+|.+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--G--i~~lIVavNKMD~v 158 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--G--IKQLIVAVNKMDLV 158 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--C--CceEEEEEEccccc
Confidence 5578999999999999999999999999999999998753 11000 111111222111 1 12489999999998
Q ss_pred CCCcceecHHHHH----HHHHHcC----CCcEEEeeccCCCCHHH
Q 028654 131 GGNSRVVSEKKAK----AWCASKG----NIPYFETSAKEGFNVEA 167 (206)
Q Consensus 131 ~~~~~~~~~~~~~----~~~~~~~----~~~~~~~s~~~~~~i~~ 167 (206)
+- .+..++++. .+.+..+ +.+|+++|+..|+|+.+
T Consensus 159 ~w--de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 159 SW--DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cc--CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 74 233333332 3333333 36799999999998875
No 270
>PRK09866 hypothetical protein; Provisional
Probab=99.66 E-value=1.1e-14 Score=115.65 Aligned_cols=110 Identities=25% Similarity=0.285 Sum_probs=71.9
Q ss_pred EEEEeeCCCccc-----cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 58 TLQIWDTAGQER-----FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 58 ~~~i~D~~G~~~-----~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
++.|+||||... +...+...+..+|+++||+|+...-+..+ ......+... . .+.|+++|+||+|+...
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~----K~~PVILVVNKIDl~dr 304 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-G----QSVPLYVLVNKFDQQDR 304 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-C----CCCCEEEEEEcccCCCc
Confidence 578999999543 23334557899999999999986433332 2223333221 1 12599999999998643
Q ss_pred CcceecHHHHHHHHH----H--cCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028654 133 NSRVVSEKKAKAWCA----S--KGNIPYFETSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 133 ~~~~~~~~~~~~~~~----~--~~~~~~~~~s~~~~~~i~~l~~~i~~~ 175 (206)
. ....+.+..+.. . .....++++||+.|.|++.+++.|.+.
T Consensus 305 e--eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 305 N--SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred c--cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 1 122344444322 1 124579999999999999999999873
No 271
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.1e-14 Score=106.82 Aligned_cols=171 Identities=23% Similarity=0.199 Sum_probs=113.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC----CC---CCcccccceeeEEEEEEe-------CCeEEEEEEeeCCCccccccc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRK----FS---NQYKATIGADFLTKEVQF-------EDRLFTLQIWDTAGQERFQSL 73 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~----~~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~~~ 73 (206)
.+++.++|+..||||||.+++..-. |. .+.....+.+..-..+.+ .+..++++++|+||+...-..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 4899999999999999999987532 22 222233333333333322 345578999999998876655
Q ss_pred cccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH----H-
Q 028654 74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----S- 148 (206)
Q Consensus 74 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~----~- 148 (206)
......-.|..++|+|+......+.++.++.. ..+ -...++|+||+|..+...+....++.....+ .
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcLiig--~~~------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECLIIG--ELL------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhhhhh--hhh------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 55555667899999999875443433332211 111 2247889999998776555544444332221 1
Q ss_pred --cCCCcEEEeeccCC----CCHHHHHHHHHHHHhhcCCCCCCC
Q 028654 149 --KGNIPYFETSAKEG----FNVEAAFECIAKNALKNEPQEEDY 186 (206)
Q Consensus 149 --~~~~~~~~~s~~~~----~~i~~l~~~i~~~~~~~~~~~~~~ 186 (206)
.++.|++++|++.| +++.+|.+.|.+++.+....++.+
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~gp 202 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEEGP 202 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCCCC
Confidence 24589999999999 799999999999998866665544
No 272
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.64 E-value=8.1e-15 Score=111.31 Aligned_cols=175 Identities=17% Similarity=0.176 Sum_probs=122.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS--------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS 72 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 72 (206)
...+|+++-+...|||||+..|+..... .......+.++-.+...+.-..+.+.++||||+.+|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 3568999999999999999999875321 11122234445455544554558899999999999999
Q ss_pred ccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----
Q 028654 73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS---- 148 (206)
Q Consensus 73 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~---- 148 (206)
.....++..|++++++|+.+.-..+. .-. +.+.+.. +.+.|+|+||+|.+.+....+..+-...|..-
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQT-rFV---lkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~d 155 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQT-RFV---LKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATD 155 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCch-hhh---HHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCCh
Confidence 99999999999999999987432221 111 1222222 66789999999999886666655555555432
Q ss_pred -cCCCcEEEeeccCCC----------CHHHHHHHHHHHHhhcCCCCCCCCCc
Q 028654 149 -KGNIPYFETSAKEGF----------NVEAAFECIAKNALKNEPQEEDYLPD 189 (206)
Q Consensus 149 -~~~~~~~~~s~~~~~----------~i~~l~~~i~~~~~~~~~~~~~~~~~ 189 (206)
.-..|++..|+.+|. ++.-||+.|++.++......+.++..
T Consensus 156 eQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~ 207 (603)
T COG1217 156 EQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQM 207 (603)
T ss_pred hhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeEE
Confidence 123688999988653 67889999999888766544444443
No 273
>PRK00007 elongation factor G; Reviewed
Probab=99.63 E-value=3.4e-15 Score=123.18 Aligned_cols=117 Identities=18% Similarity=0.116 Sum_probs=80.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 67 (206)
+...+|+++|++++|||||+++|+..... .+.....+.+.....+.+.+ ..+.++||||+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence 44679999999999999999999742110 01233334444344444444 68889999999
Q ss_pred cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
.++.......+..+|++++|+|+...-..+... .+..+... ++|+++++||+|+...
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~~-------~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADKY-------KVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHHc-------CCCEEEEEECCCCCCC
Confidence 888777788889999999999988653333322 22222221 6799999999999864
No 274
>PRK12740 elongation factor G; Reviewed
Probab=99.62 E-value=1.3e-14 Score=119.88 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=74.8
Q ss_pred EcCCCCCHHHHHHHHhcCCCC------------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccc
Q 028654 14 LGDSGVGKTSLMNQYVNRKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV 75 (206)
Q Consensus 14 iG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 75 (206)
+|+.++|||||+++|+..... .+...+.+.......+.+.+ +.+.+|||||+.++...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 599999999999999643221 01122233333334444444 7889999999988877788
Q ss_pred cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 76 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
.++..+|++++++|++..........| ..+.. .+.|+++|+||+|+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~-------~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK-------YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH-------cCCCEEEEEECCCCCCC
Confidence 888999999999999876554433222 22221 16799999999998653
No 275
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.61 E-value=5.7e-15 Score=122.29 Aligned_cols=119 Identities=20% Similarity=0.189 Sum_probs=80.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC---------------CCCC-C--cccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNR---------------KFSN-Q--YKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~---------------~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 67 (206)
....+|+++|+.++|||||+++|+.. ++.. . +..+...........+.+..+.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45689999999999999999999753 1111 0 1112222222222335566789999999999
Q ss_pred cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
.++......++..+|++++|+|+...-..+....| ..... .+.|+++++||+|....
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~-------~~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK-------ENVKPVLFINKVDRLIN 153 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH-------cCCCEEEEEEChhcccc
Confidence 98888888899999999999999863222221112 11111 16688999999998754
No 276
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.60 E-value=2.2e-15 Score=107.22 Aligned_cols=173 Identities=17% Similarity=0.197 Sum_probs=100.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-------cccccceeeEEEEEEe-------------------------
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ-------YKATIGADFLTKEVQF------------------------- 52 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~-------~~~~~~~~~~~~~~~~------------------------- 52 (206)
.+.+.-|+|+|..|||||||+.+|........ ..|....-.+...+.+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 34577899999999999999999976432211 1111100000111100
Q ss_pred ----------------CCeEEEEEEeeCCCcccccc------ccccceec--CcEEEEEEECCChh-hHHHHHHHHHHHH
Q 028654 53 ----------------EDRLFTLQIWDTAGQERFQS------LGVAFYRG--ADCCVLVYDVNVMK-SFDNLNNWREEFL 107 (206)
Q Consensus 53 ----------------~~~~~~~~i~D~~G~~~~~~------~~~~~~~~--~d~vi~v~d~~~~~-~~~~~~~~~~~~~ 107 (206)
....+...++||||+-+... .....++. .-+++|++|..... ....+..++..-.
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 11134678999999654221 12222222 34778888864322 2222333333332
Q ss_pred HhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH-----------------------cCCCcEEEeeccCCCC
Q 028654 108 IQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-----------------------KGNIPYFETSAKEGFN 164 (206)
Q Consensus 108 ~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~s~~~~~~ 164 (206)
.+.. ...|+|++.||.|+.+......+..+.+.|-.. +..+..+-+|+.+|.|
T Consensus 176 ilyk----tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G 251 (366)
T KOG1532|consen 176 ILYK----TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEG 251 (366)
T ss_pred HHHh----ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCc
Confidence 2222 278999999999998875544444443333221 2346789999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 028654 165 VEAAFECIAKNALKNEP 181 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~~ 181 (206)
++++|..+-+.+-+...
T Consensus 252 ~ddf~~av~~~vdEy~~ 268 (366)
T KOG1532|consen 252 FDDFFTAVDESVDEYEE 268 (366)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998887655433
No 277
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.59 E-value=3.2e-14 Score=119.93 Aligned_cols=147 Identities=24% Similarity=0.236 Sum_probs=98.7
Q ss_pred CCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCe----------------EEEEEEeeCCCccccccccccceecCc
Q 028654 19 VGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------------LFTLQIWDTAGQERFQSLGVAFYRGAD 82 (206)
Q Consensus 19 ~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~D~~G~~~~~~~~~~~~~~~d 82 (206)
++||||+.++.+-........+.|..+....+..+.. ...+.||||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 3599999999988776665666666655555544311 013799999999999887777788899
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcc--------------eecHHHHH--
Q 028654 83 CCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR--------------VVSEKKAK-- 143 (206)
Q Consensus 83 ~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~--------------~~~~~~~~-- 143 (206)
++++|+|+++ +.+.+.+. .+.. . ++|+++|+||+|+.+.... +...+++.
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~-~------~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~ 620 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ-Y------KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIK 620 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH-c------CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHH
Confidence 9999999986 33333322 1211 1 6799999999999643110 00111111
Q ss_pred --H----HHH-------------HcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654 144 --A----WCA-------------SKGNIPYFETSAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 144 --~----~~~-------------~~~~~~~~~~s~~~~~~i~~l~~~i~~~~ 176 (206)
. +.. ..+.++++++||++|+|+++|+.+|....
T Consensus 621 l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 621 LYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 0 111 12357899999999999999999886544
No 278
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.59 E-value=3.1e-13 Score=95.31 Aligned_cols=175 Identities=17% Similarity=0.167 Sum_probs=121.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc-------cccccccceec
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRG 80 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 80 (206)
-.+++++|.|++|||||+..+..-.........++.+.....+.+++ ..++++|.||.-+ .........+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence 36899999999999999999987665555566667778788888888 4667889999322 23345566788
Q ss_pred CcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCC-----------------------------------------
Q 028654 81 ADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENF----------------------------------------- 118 (206)
Q Consensus 81 ~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------------------------------------- 118 (206)
+|.+++|.|++..+.... +.+-++.+-... +...|++
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRL-Nk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl 218 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRL-NKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL 218 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceec-cCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence 999999999997554432 222222211111 1111122
Q ss_pred ---------------------cEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHH-
Q 028654 119 ---------------------PFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA- 176 (206)
Q Consensus 119 ---------------------pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~- 176 (206)
+.+.|-||+|. ++.|++..+++.++ . +.+|+....|++.+++.|++.+
T Consensus 219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~-------vs~eevdrlAr~Pn-s--vViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ-------VSIEEVDRLARQPN-S--VVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EecCCChHHHHHHHhccceEEEEEEEeeccce-------ecHHHHHHHhcCCC-c--EEEEeccccCHHHHHHHHHHHhc
Confidence 77888899975 56788888888876 3 5568888889999999999966
Q ss_pred ----hhcCCCCCCCCCccccCCC
Q 028654 177 ----LKNEPQEEDYLPDTIDVGG 195 (206)
Q Consensus 177 ----~~~~~~~~~~~~~~~~~~~ 195 (206)
+..++..++.+.+.+.+++
T Consensus 289 L~rvYtKk~g~~Pdfdd~~vlr~ 311 (364)
T KOG1486|consen 289 LVRVYTKKKGQRPDFDDPLVLRK 311 (364)
T ss_pred eEEEEecCCCCCCCCCCceEEeC
Confidence 3444555666666665553
No 279
>PTZ00258 GTP-binding protein; Provisional
Probab=99.59 E-value=4.9e-14 Score=107.67 Aligned_cols=87 Identities=23% Similarity=0.176 Sum_probs=63.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCe---------------EEEEEEeeCCCccc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER 69 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~ 69 (206)
+...++|+++|.||+|||||+|+|.+........|.+|.+.....+.+.+. ..++.++|+||-..
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 455679999999999999999999988766666677776666666555432 23589999999321
Q ss_pred -------cccccccceecCcEEEEEEECC
Q 028654 70 -------FQSLGVAFYRGADCCVLVYDVN 91 (206)
Q Consensus 70 -------~~~~~~~~~~~~d~vi~v~d~~ 91 (206)
........++.+|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1122233467899999999984
No 280
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.58 E-value=2.2e-14 Score=119.08 Aligned_cols=119 Identities=17% Similarity=0.122 Sum_probs=78.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC----------------CcccccceeeEEEEE--EeCCeEEEEEEeeCCCc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN----------------QYKATIGADFLTKEV--QFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G~ 67 (206)
....+|+++|+.++|||||+.+|+...... +.....+.......+ .+.+....+.|+||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 456789999999999999999997532110 001111111111122 23445678999999999
Q ss_pred cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
.++.......+..+|++++|+|+...-......-| ...... +.|.++++||+|+...
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~~-------~~~~iv~iNK~D~~~~ 154 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALRE-------RVKPVLFINKVDRLIK 154 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHHc-------CCCeEEEEECchhhcc
Confidence 99888888889999999999998864332222222 222111 5578999999998743
No 281
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.57 E-value=3.1e-14 Score=101.58 Aligned_cols=166 Identities=16% Similarity=0.106 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCc--ccccceeeEEEEEEeCCeEEEEEEeeCCCcccc-------ccccc----
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQY--KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGV---- 75 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~---- 75 (206)
++|+++|.+|+||||++|.+++....... ....+.........+++ ..+.++||||-.+. .....
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999988765332 22233444444446666 56789999992111 11111
Q ss_pred cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee-----cHHHHHHHHHHcC
Q 028654 76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV-----SEKKAKAWCASKG 150 (206)
Q Consensus 76 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~-----~~~~~~~~~~~~~ 150 (206)
......|++++|+.... -+... ...+..+...+...- ...++||.|..|......... ..+.+..+....+
T Consensus 79 ~~~~g~ha~llVi~~~r-~t~~~-~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~ 154 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR-FTEED-REVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCG 154 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred hccCCCeEEEEEEecCc-chHHH-HHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcC
Confidence 12346899999999882 22222 233344444443221 235899999888765432111 1123455666666
Q ss_pred CCcEEEeecc------CCCCHHHHHHHHHHHHhhcCC
Q 028654 151 NIPYFETSAK------EGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 151 ~~~~~~~s~~------~~~~i~~l~~~i~~~~~~~~~ 181 (206)
..++..+.. ....+.+|++.|-+.+.++..
T Consensus 155 -~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g 190 (212)
T PF04548_consen 155 -GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGG 190 (212)
T ss_dssp -TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred -CEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 456666655 335688899988888777653
No 282
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.57 E-value=1.3e-13 Score=100.14 Aligned_cols=124 Identities=16% Similarity=0.181 Sum_probs=73.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc--c-c-------
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--S-L------- 73 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~-~------- 73 (206)
...+++|+|+|.+|+|||||+|++++..... ......+..........++ ..+.+|||||-.+.. . .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 4567999999999999999999999876532 2222223333333333444 578999999944331 0 0
Q ss_pred ccccee--cCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC
Q 028654 74 GVAFYR--GADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN 133 (206)
Q Consensus 74 ~~~~~~--~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~ 133 (206)
...+++ ..|++++|..++... ...+ ...+..+...+...- ..++++|.||+|...++
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSI--WRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhh--HhCEEEEEeCCccCCCC
Confidence 112232 578888887666422 2221 233333433332111 24699999999987543
No 283
>PRK13768 GTPase; Provisional
Probab=99.56 E-value=1.9e-14 Score=105.11 Aligned_cols=115 Identities=17% Similarity=0.102 Sum_probs=70.5
Q ss_pred EEEEeeCCCccccc---cccccc---eec--CcEEEEEEECCChhhHHHH--HHHHHHHHHhcCCCCCCCCcEEEEeeCC
Q 028654 58 TLQIWDTAGQERFQ---SLGVAF---YRG--ADCCVLVYDVNVMKSFDNL--NNWREEFLIQASPSDPENFPFVVLGNKT 127 (206)
Q Consensus 58 ~~~i~D~~G~~~~~---~~~~~~---~~~--~d~vi~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~pviiv~nK~ 127 (206)
.+.+||+||+.+.. .....+ +.. ++++++++|+......... ..|+...... . .+.|+++|+||+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~----~~~~~i~v~nK~ 172 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-R----LGLPQIPVLNKA 172 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-H----cCCCEEEEEEhH
Confidence 57899999976532 222222 222 8999999999764433332 2222221111 1 177999999999
Q ss_pred CCCCCCcceecHHHHH------------------------HHHHHc-CCCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654 128 DVDGGNSRVVSEKKAK------------------------AWCASK-GNIPYFETSAKEGFNVEAAFECIAKNAL 177 (206)
Q Consensus 128 D~~~~~~~~~~~~~~~------------------------~~~~~~-~~~~~~~~s~~~~~~i~~l~~~i~~~~~ 177 (206)
|+............+. +..... ...+++++|++++.|+++++++|.+.+.
T Consensus 173 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 173 DLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 9976532211111111 111122 2358899999999999999999988764
No 284
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=4.4e-14 Score=106.89 Aligned_cols=180 Identities=21% Similarity=0.147 Sum_probs=126.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC---CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
-|+..|+---|||||+.++.+..-. .....+++.+.........+ ..+.|+|.||++++-..+...+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 4677899999999999999876543 34445555555555444444 488899999999999989888899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcceecHHHHHHHHHH--cCCCcEEEeeccCCC
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVVSEKKAKAWCAS--KGNIPYFETSAKEGF 163 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~ 163 (206)
|+++++.-..+..+.. .+...+ +++ .++|+||+|+.+.. ...+..+++... ..+.+++.+|+.+|+
T Consensus 80 vV~~deGl~~qtgEhL--~iLdll------gi~~giivltk~D~~d~~---r~e~~i~~Il~~l~l~~~~i~~~s~~~g~ 148 (447)
T COG3276 80 VVAADEGLMAQTGEHL--LILDLL------GIKNGIIVLTKADRVDEA---RIEQKIKQILADLSLANAKIFKTSAKTGR 148 (447)
T ss_pred EEeCccCcchhhHHHH--HHHHhc------CCCceEEEEeccccccHH---HHHHHHHHHHhhcccccccccccccccCC
Confidence 9999753332222211 122222 333 59999999998643 222222332222 345788999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCccccCCCCCccCCCCC
Q 028654 164 NVEAAFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGC 204 (206)
Q Consensus 164 ~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 204 (206)
|+++|.+.|.+..- ........|-.+.+...+..|+.||
T Consensus 149 GI~~Lk~~l~~L~~--~~e~d~~~~fri~IDraFtVKGvGT 187 (447)
T COG3276 149 GIEELKNELIDLLE--EIERDEQKPFRIAIDRAFTVKGVGT 187 (447)
T ss_pred CHHHHHHHHHHhhh--hhhhccCCceEEEEeeEEEeccccE
Confidence 99999999999764 3334445677777888888888886
No 285
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.54 E-value=2.1e-13 Score=100.44 Aligned_cols=149 Identities=20% Similarity=0.147 Sum_probs=100.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC---------------------------------CCCcccccceeeEEEEEEe
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF---------------------------------SNQYKATIGADFLTKEVQF 52 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~ 52 (206)
...++.+-+|...=||||||-+|+...- ..+...+ .++......+
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQG--ITIDVAYRyF 81 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQG--ITIDVAYRYF 81 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcC--ceEEEEeeec
Confidence 4568999999999999999999875321 0111222 2333333333
Q ss_pred CCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-cEEEEeeCCCCCC
Q 028654 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDG 131 (206)
Q Consensus 53 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pviiv~nK~D~~~ 131 (206)
.-...+|.+-||||+++|...+..-...||++|+++|+...-.-+ .+-...+...+ ++ .+++.+||+||.+
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~Q--TrRHs~I~sLL------GIrhvvvAVNKmDLvd 153 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQ--TRRHSFIASLL------GIRHVVVAVNKMDLVD 153 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHH--hHHHHHHHHHh------CCcEEEEEEeeecccc
Confidence 344468899999999999999999999999999999997432111 11112222222 33 4889999999998
Q ss_pred CCcceecHH----HHHHHHHHcC--CCcEEEeeccCCCCHH
Q 028654 132 GNSRVVSEK----KAKAWCASKG--NIPYFETSAKEGFNVE 166 (206)
Q Consensus 132 ~~~~~~~~~----~~~~~~~~~~--~~~~~~~s~~~~~~i~ 166 (206)
.. +...+ +...|+...+ ...++++||..|+|+-
T Consensus 154 y~--e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 154 YS--EEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred cC--HHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 73 33333 3344666654 3579999999999875
No 286
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.53 E-value=4.4e-13 Score=98.96 Aligned_cols=125 Identities=16% Similarity=0.123 Sum_probs=72.6
Q ss_pred ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc-------ccc
Q 028654 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LGV 75 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~ 75 (206)
.....++|+++|.+|+||||++|++++..... ......+...........+ ..+.++||||..+... ...
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHH
Confidence 34568899999999999999999999876431 1111222222222223333 6789999999443211 111
Q ss_pred cce--ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 76 AFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 76 ~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
.++ ...|+++||..++.......-...+..+...+...- ..+++++.|+.|..++
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i--w~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI--WRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh--hccEEEEEECCccCCC
Confidence 111 258999999665432111111233344444432211 3469999999997644
No 287
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.53 E-value=7.8e-15 Score=105.90 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=60.7
Q ss_pred EEEEeeCCCccccccccccce--------ecCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654 58 TLQIWDTAGQERFQSLGVAFY--------RGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (206)
Q Consensus 58 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 128 (206)
.+.++|||||.++...+...- ...-++++++|..-..+ ...+..++..+..+.+. +.|.+.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~----~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL----ELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH----TSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhC----CCCEEEeeeccC
Confidence 578999999877655443322 34558899999864322 22234434443333322 789999999999
Q ss_pred CCCCCc--c------------------eecHHHHHHHHHHcCCC-cEEEeeccCCCCHHHHHHHHHHHH
Q 028654 129 VDGGNS--R------------------VVSEKKAKAWCASKGNI-PYFETSAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 129 ~~~~~~--~------------------~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~l~~~i~~~~ 176 (206)
+..... . ....+.+.++....+.. .++++|+.+++++++++..|-+++
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 986210 0 00011111122223445 899999999999999999887754
No 288
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.52 E-value=5.8e-14 Score=118.01 Aligned_cols=118 Identities=17% Similarity=0.149 Sum_probs=80.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCcccccceeeEEEEEEeC--------------C
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS----------------NQYKATIGADFLTKEVQFE--------------D 54 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------------~ 54 (206)
.+...+|+|+|+.++|||||+++|+..... .+.....+.......+.+. .
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 445789999999999999999999754321 1111122222212222221 2
Q ss_pred eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (206)
Q Consensus 55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 130 (206)
....+.++||||+.+|.......+..+|++|+|+|+.+.-......-| ..+... ++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~~-------~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGE-------RIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHHC-------CCCEEEEEECCccc
Confidence 356789999999999998888899999999999999875433332222 222211 77999999999987
No 289
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.51 E-value=3.9e-13 Score=100.99 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=70.7
Q ss_pred EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV 136 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~ 136 (206)
+.+.|+||+|..+.... ....+|.++++.+....+.+..+. ..+. ...-++|+||+|+.......
T Consensus 149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~---------E~aDIiVVNKaDl~~~~~a~ 213 (332)
T PRK09435 149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIM---------ELADLIVINKADGDNKTAAR 213 (332)
T ss_pred CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhh---------hhhheEEeehhcccchhHHH
Confidence 57899999996533222 456799999998755444443322 1111 22348999999988643222
Q ss_pred ecHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654 137 VSEKKAKAWCASK------GNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 137 ~~~~~~~~~~~~~------~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
....++....... ...+++.+|++++.|++++++.|.+.+....
T Consensus 214 ~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~ 263 (332)
T PRK09435 214 RAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALT 263 (332)
T ss_pred HHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 3333444333221 1258999999999999999999999876433
No 290
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.50 E-value=9.4e-13 Score=99.63 Aligned_cols=83 Identities=24% Similarity=0.171 Sum_probs=60.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeE---------------EEEEEeeCCCccc----
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL---------------FTLQIWDTAGQER---- 69 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~---- 69 (206)
++|+++|.|++|||||+|+|++........|.+|.+.....+.+.+.. ..+.++|+||-..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999987555555666666665555554421 2589999999322
Q ss_pred ---cccccccceecCcEEEEEEECC
Q 028654 70 ---FQSLGVAFYRGADCCVLVYDVN 91 (206)
Q Consensus 70 ---~~~~~~~~~~~~d~vi~v~d~~ 91 (206)
........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1112233467899999999984
No 291
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.50 E-value=1e-12 Score=92.61 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=64.5
Q ss_pred EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV 136 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~ 136 (206)
....++++.|..-..... . .-+|.++.|+|+.+.+.... .+..++ ...-++++||+|+.+. ..
T Consensus 92 ~D~iiIEt~G~~l~~~~~-~--~l~~~~i~vvD~~~~~~~~~--~~~~qi----------~~ad~~~~~k~d~~~~--~~ 154 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS-P--ELADLTIFVIDVAAGDKIPR--KGGPGI----------TRSDLLVINKIDLAPM--VG 154 (199)
T ss_pred CCEEEEECCCCCcccccc-h--hhhCcEEEEEEcchhhhhhh--hhHhHh----------hhccEEEEEhhhcccc--cc
Confidence 456678888832111111 1 12688999999986554221 111111 1123899999999853 11
Q ss_pred ecHHHHHHHHHH-cCCCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654 137 VSEKKAKAWCAS-KGNIPYFETSAKEGFNVEAAFECIAKNAL 177 (206)
Q Consensus 137 ~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~l~~~i~~~~~ 177 (206)
...+...+..+. ....+++++|+++|+|+++++++|.+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 155 ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 223333333333 34589999999999999999999998664
No 292
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.49 E-value=8.4e-13 Score=95.01 Aligned_cols=142 Identities=18% Similarity=0.181 Sum_probs=83.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
..+..|+++|++|+|||||++.+.+..-........+ .+. + ......++.++||||.. ......++.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i~---i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PIT---V-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cEE---E-EecCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence 3467799999999999999999986522111111111 111 1 11234578899999864 22334467899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEeeCCCCCCCCcc-eecHHHHHH-HHH-HcCCCcEEEeeccC
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGNKTDVDGGNSR-VVSEKKAKA-WCA-SKGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~D~~~~~~~-~~~~~~~~~-~~~-~~~~~~~~~~s~~~ 161 (206)
+++|++....... ..++..+... +.|. ++|+||+|+.+.... ....+.+.. +.. ...+.+++++||++
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~~-------g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~ 180 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQVH-------GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIV 180 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHHc-------CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeecc
Confidence 9999986433222 2222222211 4574 559999999753211 111223332 222 23458999999987
Q ss_pred CC
Q 028654 162 GF 163 (206)
Q Consensus 162 ~~ 163 (206)
.-
T Consensus 181 ~~ 182 (225)
T cd01882 181 HG 182 (225)
T ss_pred CC
Confidence 63
No 293
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.49 E-value=2.8e-12 Score=100.03 Aligned_cols=164 Identities=20% Similarity=0.304 Sum_probs=121.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
.+.+++.|+|+.++|||.|++.+.++.+......+....+....+...+....+.+.|.+-. ......... ..+|+++
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence 45789999999999999999999999988766677777777777777777777777777654 222222222 6799999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
++||.+++.++......+...... ...|+++|++|+|+.+...+..... .+++...+..+.+.+|.+....
T Consensus 501 ~~YDsS~p~sf~~~a~v~~~~~~~------~~~Pc~~va~K~dlDe~~Q~~~iqp--de~~~~~~i~~P~~~S~~~~~s- 571 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYLAEVYNKYFDL------YKIPCLMVATKADLDEVPQRYSIQP--DEFCRQLGLPPPIHISSKTLSS- 571 (625)
T ss_pred EecccCCchHHHHHHHHHHHhhhc------cCCceEEEeeccccchhhhccCCCh--HHHHHhcCCCCCeeeccCCCCC-
Confidence 999999999998876554433222 2789999999999987633333222 7788888766677788875434
Q ss_pred HHHHHHHHHHHhhcC
Q 028654 166 EAAFECIAKNALKNE 180 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~ 180 (206)
.++|..|+.++.-..
T Consensus 572 ~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 572 NELFIKLATMAQYPH 586 (625)
T ss_pred chHHHHHHHhhhCCC
Confidence 899999998776544
No 294
>PTZ00416 elongation factor 2; Provisional
Probab=99.49 E-value=1.5e-13 Score=115.43 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=78.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCcccccceeeEEEEEEeC--------CeEEEEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS----------------NQYKATIGADFLTKEVQFE--------DRLFTLQI 61 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~i 61 (206)
+...+|+++|+.++|||||+++|+..... .+...+.+.......+.+. +....+.|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 44679999999999999999999863221 0111111111111222232 22567899
Q ss_pred eeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (206)
Q Consensus 62 ~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 130 (206)
+||||+.++.......++.+|++|+|+|+.+.-.... ...+..+... +.|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~-------~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQE-------RIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHc-------CCCEEEEEEChhhh
Confidence 9999999998888888999999999999987433222 2222323221 67999999999987
No 295
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.48 E-value=8e-13 Score=97.65 Aligned_cols=140 Identities=16% Similarity=0.211 Sum_probs=75.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc----------ccccceeeEEEEEEeCCeEEEEEEeeCCCcc--------
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY----------KATIGADFLTKEVQFEDRLFTLQIWDTAGQE-------- 68 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------- 68 (206)
-.++|+|+|.+|+|||||+|.|++....... ..+.........+.-++..+.+.++||||-.
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4689999999999999999999987654221 1222233333444556788899999999911
Q ss_pred ----------cccccc---------ccceecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654 69 ----------RFQSLG---------VAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (206)
Q Consensus 69 ----------~~~~~~---------~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 128 (206)
++.... ...=...|+++|+++++... ...++ .++..+.. ..++|.|+.|+|
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls~--------~vNvIPvIaKaD 153 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLSK--------RVNVIPVIAKAD 153 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHTT--------TSEEEEEESTGG
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhcc--------cccEEeEEeccc
Confidence 010000 00113478999999987532 22222 33344432 567999999999
Q ss_pred CCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654 129 VDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (206)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
.....+.....+.+..-....+ +.++.
T Consensus 154 ~lt~~el~~~k~~i~~~l~~~~-I~~f~ 180 (281)
T PF00735_consen 154 TLTPEELQAFKQRIREDLEENN-IKIFD 180 (281)
T ss_dssp GS-HHHHHHHHHHHHHHHHHTT---S--
T ss_pred ccCHHHHHHHHHHHHHHHHHcC-ceeec
Confidence 8654222222333333333333 55454
No 296
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.45 E-value=1.7e-12 Score=89.47 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=42.1
Q ss_pred EEEEeeCCCcc----ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCC
Q 028654 58 TLQIWDTAGQE----RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127 (206)
Q Consensus 58 ~~~i~D~~G~~----~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~ 127 (206)
.+.|+||||-. .....+..+++.+|++++|.+++..........+....... ...+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~-------~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD-------KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT-------CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC-------CCeEEEEEcCC
Confidence 37899999943 23355667789999999999999855544444444433221 33589999985
No 297
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.45 E-value=4.6e-13 Score=93.18 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=102.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc-----ccccceecC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----LGVAFYRGA 81 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~ 81 (206)
..||+++|.+|||||++=..++.... .+...++.+.++....+.+-| +..+.+||++|++.+-+ .....+.+.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 35899999999999998666553322 234455666677666665554 24788999999874432 344567889
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH---HcCCCcEEEee
Q 028654 82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA---SKGNIPYFETS 158 (206)
Q Consensus 82 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s 158 (206)
+++|++||++..+-..++..+...+....... +...+++.+.|.|+...+.+....++...... ......++++|
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999998776666666666555444433 24568999999999876555544444333222 22336778888
Q ss_pred ccCC
Q 028654 159 AKEG 162 (206)
Q Consensus 159 ~~~~ 162 (206)
.++.
T Consensus 161 iwDe 164 (295)
T KOG3886|consen 161 IWDE 164 (295)
T ss_pred hhhH
Confidence 7654
No 298
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.45 E-value=6.6e-12 Score=94.75 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=83.1
Q ss_pred EEEEEEeeCCCccccccccccceecCcEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-------SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (206)
Q Consensus 56 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 128 (206)
.+.+.+||++|+...+..|..++.+++++|+|+|.++.. ....+..-+..+...+......+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 367889999999999999999999999999999998731 1122333333344444443335789999999999
Q ss_pred CCCC--------------CcceecHHHHHHHHHH---------cCCCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654 129 VDGG--------------NSRVVSEKKAKAWCAS---------KGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 129 ~~~~--------------~~~~~~~~~~~~~~~~---------~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
+... .......+....+... ...+.+..++|.+..+++.+|+.+.+.++...
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 5321 0102233333332221 11244566888888899999999888877643
No 299
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.44 E-value=3.9e-12 Score=92.97 Aligned_cols=175 Identities=21% Similarity=0.300 Sum_probs=120.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEe--CCeEEEEEEeeCCCccccccccccceec---Cc-
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF--EDRLFTLQIWDTAGQERFQSLGVAFYRG---AD- 82 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~---~d- 82 (206)
-+|+|+|..++|||||+.+|.+.. ...+..+..|....+.- .+...++.+|-..|+.-...+....+.. ++
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 478999999999999999997765 44566666665554432 3345677888888876666666555543 23
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCC---------------------------------------------
Q 028654 83 CCVLVYDVNVM-KSFDNLNNWREEFLIQASPSDPE--------------------------------------------- 116 (206)
Q Consensus 83 ~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 116 (206)
.+|++.|.+++ .-++.++.|...+..+......+
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l 209 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL 209 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence 77889999987 34555677766644443322211
Q ss_pred ------------CCcEEEEeeCCCCCC-----CCcce----ecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028654 117 ------------NFPFVVLGNKTDVDG-----GNSRV----VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 117 ------------~~pviiv~nK~D~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~ 175 (206)
++|+++|+||+|... .+.+. .....++.|+.+++ ...|.+|+++..|++-+...|.++
T Consensus 210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-aaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-AALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC-ceeEEeecccccchHHHHHHHHHH
Confidence 339999999999732 11122 23334556777777 788999999999999999999998
Q ss_pred HhhcCCCCCCCC
Q 028654 176 ALKNEPQEEDYL 187 (206)
Q Consensus 176 ~~~~~~~~~~~~ 187 (206)
.+--+=.-+.++
T Consensus 289 ~yG~~fttpAlV 300 (473)
T KOG3905|consen 289 SYGFPFTTPALV 300 (473)
T ss_pred hcCcccCCcceE
Confidence 876555544443
No 300
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.1e-12 Score=104.82 Aligned_cols=162 Identities=19% Similarity=0.156 Sum_probs=104.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC----------------CeEEEEEEeeCCCccccc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAGQERFQ 71 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~ 71 (206)
..-|||+|+..+|||-|+..+.+-.+......+.+..+....+... -..--+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 4568999999999999999998766554444443333222222111 011246789999999999
Q ss_pred cccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce---e-----------
Q 028654 72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV---V----------- 137 (206)
Q Consensus 72 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~---~----------- 137 (206)
.+.......||.+|+|+|+.+.-..+.+..+ ..+. . .+.|+||.+||+|........ -
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqtiESi-~lLR-~------rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESI-NLLR-M------RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchhHHH-HHHH-h------cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 9998888999999999999864333333221 2221 1 178999999999975432100 0
Q ss_pred cHH--------HHHHHHHHc-------------CCCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654 138 SEK--------KAKAWCASK-------------GNIPYFETSAKEGFNVEAAFECIAKNAL 177 (206)
Q Consensus 138 ~~~--------~~~~~~~~~-------------~~~~~~~~s~~~~~~i~~l~~~i~~~~~ 177 (206)
..+ .+.+|+.+. ..+.++++||..|+|+-+|+.+|++...
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 000 111222211 1136899999999999999999988553
No 301
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.43 E-value=9.1e-12 Score=94.59 Aligned_cols=174 Identities=16% Similarity=0.164 Sum_probs=99.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC----CCC------------CCcccc---cceeeEE---EEEEe---CCeEEEEEEe
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR----KFS------------NQYKAT---IGADFLT---KEVQF---EDRLFTLQIW 62 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~----~~~------------~~~~~~---~~~~~~~---~~~~~---~~~~~~~~i~ 62 (206)
.+.|+|+|+.++|||||+|+|.+. ... ++..++ +|++... .-+.+ ++....+.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 578999999999999999999987 222 112222 2222222 12222 3445688899
Q ss_pred eCCCccccc-------cc----------------------ccccee-cCcEEEEEE-ECCC----hhhHHH-HHHHHHHH
Q 028654 63 DTAGQERFQ-------SL----------------------GVAFYR-GADCCVLVY-DVNV----MKSFDN-LNNWREEF 106 (206)
Q Consensus 63 D~~G~~~~~-------~~----------------------~~~~~~-~~d~vi~v~-d~~~----~~~~~~-~~~~~~~~ 106 (206)
||+|-..-. .. +...+. ++++.++|. |.+- ++.+.. -.++...+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 999921100 01 223345 789888888 7741 122222 24566666
Q ss_pred HHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC--CCHHHHHHHHHHHHhhcCCC-C
Q 028654 107 LIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG--FNVEAAFECIAKNALKNEPQ-E 183 (206)
Q Consensus 107 ~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~i~~l~~~i~~~~~~~~~~-~ 183 (206)
... ++|+++|+|+.|-... ...+....+...++ .+++.+|+.+- +++..++..++ ++-+-. =
T Consensus 177 k~~-------~kPfiivlN~~dp~~~----et~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~vL---~EFPv~Ei 241 (492)
T TIGR02836 177 KEL-------NKPFIILLNSTHPYHP----ETEALRQELEEKYD-VPVLAMDVESMRESDILSVLEEVL---YEFPILEI 241 (492)
T ss_pred Hhc-------CCCEEEEEECcCCCCc----hhHHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHHHH---hcCCceEE
Confidence 543 8899999999994322 23334445545555 78888887643 34555444444 333322 2
Q ss_pred CCCCCccccCCCC
Q 028654 184 EDYLPDTIDVGGG 196 (206)
Q Consensus 184 ~~~~~~~~~~~~~ 196 (206)
+-.+|.|+..=..
T Consensus 242 ~~~~P~Wve~L~~ 254 (492)
T TIGR02836 242 NIDLPSWVEVLDE 254 (492)
T ss_pred EeeCchHHHhcCC
Confidence 3336666655444
No 302
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.3e-12 Score=101.95 Aligned_cols=154 Identities=21% Similarity=0.249 Sum_probs=100.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCcccccceeeEEEEEEeCCe
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFEDR 55 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 55 (206)
..+.++++|+..+|||||+.+++.... ..++.. +.+.......++..
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERer--GvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERER--GVTMDVKTTWFESK 253 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhc--ceeEEeeeEEEecC
Confidence 467899999999999999999865311 112222 23333444455566
Q ss_pred EEEEEEeeCCCccccccccccceecCcEEEEEEECCChh---hHH---HHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK---SFD---NLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (206)
Q Consensus 56 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 129 (206)
...++++|+||+..|-..+...+..+|++++|+|++-.+ .|+ ...+. ..+.+.+. -..++|++||+|+
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~Lg-----i~qlivaiNKmD~ 327 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRSLG-----ISQLIVAINKMDL 327 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-HHHHHHcC-----cceEEEEeecccc
Confidence 678899999999999999999999999999999997421 111 11111 11222222 2248999999999
Q ss_pred CCCC--cceecHHHHHHHH-HHcC----CCcEEEeeccCCCCHHHH
Q 028654 130 DGGN--SRVVSEKKAKAWC-ASKG----NIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 130 ~~~~--~~~~~~~~~~~~~-~~~~----~~~~~~~s~~~~~~i~~l 168 (206)
++-. ..++....+..|. ...+ ...|+++|+..|+|+-..
T Consensus 328 V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 328 VSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 8641 1122333344454 3333 358999999999987543
No 303
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.43 E-value=6.5e-13 Score=97.40 Aligned_cols=81 Identities=20% Similarity=0.151 Sum_probs=58.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCe---------------EEEEEEeeCCCccc------
Q 028654 11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER------ 69 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~------ 69 (206)
|+++|.|++|||||+|+|++........+.+|.+.....+.+.+. ...+.++|+||-..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999998876655677776666666655443 23589999999322
Q ss_pred -cccccccceecCcEEEEEEECC
Q 028654 70 -FQSLGVAFYRGADCCVLVYDVN 91 (206)
Q Consensus 70 -~~~~~~~~~~~~d~vi~v~d~~ 91 (206)
........++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1112233457799999999874
No 304
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.43 E-value=1.2e-11 Score=96.93 Aligned_cols=178 Identities=20% Similarity=0.282 Sum_probs=117.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC--CeEEEEEEeeCCCccccccccccceecC----
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRGA---- 81 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~---- 81 (206)
.-.|+|+|..++|||||+.+|.+.. .+.++.+.+|....+.-+ ....++.+|-+.|...+..+....+...
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 4689999999999999999986543 455677777766554322 2335689999988777777666655432
Q ss_pred cEEEEEEECCChhhH-HHHHHHHHHHHHhcCCC-----------------------------------------------
Q 028654 82 DCCVLVYDVNVMKSF-DNLNNWREEFLIQASPS----------------------------------------------- 113 (206)
Q Consensus 82 d~vi~v~d~~~~~~~-~~~~~~~~~~~~~~~~~----------------------------------------------- 113 (206)
-++++|+|.+.+-.+ +.+..|+..+..+....
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 378999999986443 22333333311111000
Q ss_pred -----------CCCCCcEEEEeeCCCCCCCCc---------ceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Q 028654 114 -----------DPENFPFVVLGNKTDVDGGNS---------RVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173 (206)
Q Consensus 114 -----------~~~~~pviiv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~ 173 (206)
...++|++||++|+|....-. .......++.++..++ ...+.+|.++..+++-|+..|.
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG-AsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG-ASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-CeEEEeeccccccHHHHHHHHH
Confidence 001359999999999643210 1233344566777777 7788899999999999999999
Q ss_pred HHHhhcCCCCCCCCCc
Q 028654 174 KNALKNEPQEEDYLPD 189 (206)
Q Consensus 174 ~~~~~~~~~~~~~~~~ 189 (206)
+.+...+-.....+-+
T Consensus 261 h~l~~~~f~~~~~vv~ 276 (472)
T PF05783_consen 261 HRLYGFPFKTPAQVVE 276 (472)
T ss_pred HHhccCCCCCCceeec
Confidence 9988766654444433
No 305
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.42 E-value=1.5e-12 Score=98.54 Aligned_cols=164 Identities=14% Similarity=0.148 Sum_probs=79.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccc---eeeEEEEEEeCCeEEEEEEeeCCCcccccccccc-----c
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIG---ADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVA-----F 77 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-----~ 77 (206)
..+++|+|+|.+|+|||||||+|.+-...+.....+| ++.....+.. ...-++.+||.||.....-.... -
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 4578999999999999999999976433211111111 1111122221 22236889999994322222222 2
Q ss_pred eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC--CC-------CCcceecHHHHHHHHHH
Q 028654 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV--DG-------GNSRVVSEKKAKAWCAS 148 (206)
Q Consensus 78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~--~~-------~~~~~~~~~~~~~~~~~ 148 (206)
+...|.+|++.+-.-.+.- ..+...+..+ ++|+.+|-||+|. .. .-.+....+++++.+..
T Consensus 112 ~~~yD~fiii~s~rf~~nd---v~La~~i~~~-------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 112 FYRYDFFIIISSERFTEND---VQLAKEIQRM-------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp GGG-SEEEEEESSS--HHH---HHHHHHHHHT-------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred ccccCEEEEEeCCCCchhh---HHHHHHHHHc-------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence 4567888887764422211 2233334333 7799999999995 10 00111222233332221
Q ss_pred ------cCCCcEEEeeccCCC--CHHHHHHHHHHHHhhcC
Q 028654 149 ------KGNIPYFETSAKEGF--NVEAAFECIAKNALKNE 180 (206)
Q Consensus 149 ------~~~~~~~~~s~~~~~--~i~~l~~~i~~~~~~~~ 180 (206)
....++|-+|+.+-. ++..|.+.+.+-++..+
T Consensus 182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 123578889988754 67788888887776543
No 306
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=4.2e-12 Score=91.59 Aligned_cols=182 Identities=18% Similarity=0.161 Sum_probs=113.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcC----------CCC----CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNR----------KFS----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 70 (206)
..+.++|..+|+..-|||||..++..- .|. .......+.++....+.+.-....+..+|+||+.+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 456789999999999999999887541 111 112233455666667777666677788999999999
Q ss_pred ccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCccee-cHHHHHHHHHH
Q 028654 71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVV-SEKKAKAWCAS 148 (206)
Q Consensus 71 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~-~~~~~~~~~~~ 148 (206)
-..+..-....|+.|+|+.+++..-.+..... .+.++. +.| +++++||+|+.++..... -..++..+...
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHi--Llarqv------Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~ 160 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHI--LLARQV------GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhh--hhhhhc------CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence 99999988999999999999983322221111 111111 555 789999999997433222 22344555555
Q ss_pred cC----CCcEEEeeccC---C-CCHHHHHHHHHHHHhhcCCCCCCCCCccccCC
Q 028654 149 KG----NIPYFETSAKE---G-FNVEAAFECIAKNALKNEPQEEDYLPDTIDVG 194 (206)
Q Consensus 149 ~~----~~~~~~~s~~~---~-~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 194 (206)
++ ..|++.-|+.. + ....+-...|.+++-+..+.++...-..+..+
T Consensus 161 y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~dkPflmp 214 (394)
T COG0050 161 YGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDIDKPFLMP 214 (394)
T ss_pred cCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCccccccccc
Confidence 43 46777777653 1 12333444445555555555444444444443
No 307
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.40 E-value=2.2e-12 Score=87.98 Aligned_cols=152 Identities=19% Similarity=0.130 Sum_probs=87.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEE---------------EEEEe--------------------
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLT---------------KEVQF-------------------- 52 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~-------------------- 52 (206)
.++|.|.|++|||||+|+.+++..-.........+.+.+. ..+..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 3899999999999999999977532111000001111110 00000
Q ss_pred CCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 53 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
....+.+.|++..| ..- ..-++.-..+.-|+|+|++..+.... +-...+ -..=++|+||.|+.+.
T Consensus 93 ~~~~~Dll~iEs~G--NL~-~~~sp~L~d~~~v~VidvteGe~~P~--K~gP~i----------~~aDllVInK~DLa~~ 157 (202)
T COG0378 93 DFPDLDLLFIESVG--NLV-CPFSPDLGDHLRVVVIDVTEGEDIPR--KGGPGI----------FKADLLVINKTDLAPY 157 (202)
T ss_pred cCCcCCEEEEecCc--cee-cccCcchhhceEEEEEECCCCCCCcc--cCCCce----------eEeeEEEEehHHhHHH
Confidence 00114566667766 111 11111112347899999986543210 000000 1134899999999877
Q ss_pred CcceecHHHHHHHHHHc-CCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654 133 NSRVVSEKKAKAWCASK-GNIPYFETSAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 133 ~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~l~~~i~~~~ 176 (206)
...+.+...+-++.. +..+++++|+++|+|++++++|+...+
T Consensus 158 --v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 158 --VGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred --hCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 334445555554443 468999999999999999999998754
No 308
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.40 E-value=1.2e-11 Score=88.11 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=84.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC------------Cccccc--ceeeEEEEEEe------------------CC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN------------QYKATI--GADFLTKEVQF------------------ED 54 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~------------~~~~~~--~~~~~~~~~~~------------------~~ 54 (206)
....|+++|+.|+|||||++++....... ...... ........+.. ..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 36788999999999999999987541100 000000 00000000000 00
Q ss_pred eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc
Q 028654 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS 134 (206)
Q Consensus 55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~ 134 (206)
....+.+++|.|.-.... .+.-..+..+.++|+.+.+... ......+ ..|.++++||+|+.+..
T Consensus 101 ~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~~~~~~----------~~a~iiv~NK~Dl~~~~- 164 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LKYPGMF----------KEADLIVINKADLAEAV- 164 (207)
T ss_pred CCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hhhHhHH----------hhCCEEEEEHHHccccc-
Confidence 124667888888211111 1112345556788887543211 1111111 45789999999997531
Q ss_pred ceecHHHHHHHHHH-cCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028654 135 RVVSEKKAKAWCAS-KGNIPYFETSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~l~~~i~~~ 175 (206)
....+........ ....+++++|++++.|++++++++.+.
T Consensus 165 -~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 165 -GFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred -hhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 1122233333322 234789999999999999999999874
No 309
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.39 E-value=2.6e-11 Score=92.28 Aligned_cols=123 Identities=13% Similarity=0.143 Sum_probs=81.1
Q ss_pred EEEEEeeCCCccccccccccceecCcEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-------SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 129 (206)
..+.+||.+|+...+..|..++.+++++|||+|.++.. ....+..-+..+...+......+.|+++++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 56789999999999999999999999999999999632 11223333334444444444457899999999996
Q ss_pred CCCC-------------cceecHHHHHHHHHH-----c-----CCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654 130 DGGN-------------SRVVSEKKAKAWCAS-----K-----GNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 130 ~~~~-------------~~~~~~~~~~~~~~~-----~-----~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
.... ......+....+... . ..+-++.++|.+..++..+|+.+.+.+.+.
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 3210 011223333322211 1 123456688888889999998888877654
No 310
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=3.3e-12 Score=104.17 Aligned_cols=123 Identities=19% Similarity=0.173 Sum_probs=86.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 67 (206)
+...+|.++|+-.+|||||..+++..... .+...+.+.......+.+.+ ...+.++|||||
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCc
Confidence 45789999999999999999998753221 11122222333233333333 578999999999
Q ss_pred cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee
Q 028654 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV 137 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~ 137 (206)
.+|.......++-+|++++|+|+...-..+.-.-|.. .. .. ++|.++++||+|....+....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rq-a~----~~---~vp~i~fiNKmDR~~a~~~~~ 148 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQ-AD----KY---GVPRILFVNKMDRLGADFYLV 148 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHH-Hh----hc---CCCeEEEEECccccccChhhh
Confidence 9999999999999999999999987444333223322 22 21 889999999999987654433
No 311
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.38 E-value=5.2e-12 Score=91.91 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=75.0
Q ss_pred ccccccccccceecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHH
Q 028654 67 QERFQSLGVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW 145 (206)
Q Consensus 67 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~ 145 (206)
.+++..+.+.+++++|++++|+|+.++. ++..+.+|+..+.. .++|+++|+||+|+.+. .....+....+
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-------~~i~~vIV~NK~DL~~~--~~~~~~~~~~~ 93 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-------QNIEPIIVLNKIDLLDD--EDMEKEQLDIY 93 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEECcccCCC--HHHHHHHHHHH
Confidence 3566677778899999999999999877 88889999876543 27899999999999753 23333344444
Q ss_pred HHHcCCCcEEEeeccCCCCHHHHHHHHHH
Q 028654 146 CASKGNIPYFETSAKEGFNVEAAFECIAK 174 (206)
Q Consensus 146 ~~~~~~~~~~~~s~~~~~~i~~l~~~i~~ 174 (206)
. ..+ .+++++||+++.|++++|+.+.+
T Consensus 94 ~-~~g-~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 94 R-NIG-YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred H-HCC-CeEEEEecCCchhHHHHHhhhcC
Confidence 3 344 78999999999999999988764
No 312
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.37 E-value=2.4e-11 Score=91.15 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=65.1
Q ss_pred EEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcc
Q 028654 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR 135 (206)
Q Consensus 56 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~ 135 (206)
.+.+.|+||+|.... ....+..+|.++++...... ..+..+...+. ++|.++|+||+|+.+....
T Consensus 126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l~---------~~~~ivv~NK~Dl~~~~~~ 190 (300)
T TIGR00750 126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTG---DDLQGIKAGLM---------EIADIYVVNKADGEGATNV 190 (300)
T ss_pred CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCcc---HHHHHHHHHHh---------hhccEEEEEcccccchhHH
Confidence 367899999994321 12245668888888654432 33333333231 5678999999999864221
Q ss_pred eecHHHH----HHHHHHc-C-CCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654 136 VVSEKKA----KAWCASK-G-NIPYFETSAKEGFNVEAAFECIAKNAL 177 (206)
Q Consensus 136 ~~~~~~~----~~~~~~~-~-~~~~~~~s~~~~~~i~~l~~~i~~~~~ 177 (206)
....... ..+.... + ..+++++|++++.|+++++++|.+...
T Consensus 191 ~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 191 TIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 1111111 1111111 1 146899999999999999999998644
No 313
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=3.9e-13 Score=97.35 Aligned_cols=193 Identities=15% Similarity=0.172 Sum_probs=125.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCC---CCCCccccccee--eEEEEE---------------------------Ee
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGAD--FLTKEV---------------------------QF 52 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~~--~~~~~~---------------------------~~ 52 (206)
++-.++|.-+|+...||||++.++.+-. |..+.....+.. |....+ ..
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 5668899999999999999999987632 111111111100 000000 00
Q ss_pred ---CC---eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeC
Q 028654 53 ---ED---RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126 (206)
Q Consensus 53 ---~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK 126 (206)
.+ -...+.|+|+||++-+...+..-..-.|++++++-.+....-....+.+-.+.-+- =..++++-||
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~------LkhiiilQNK 188 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK------LKHIIILQNK 188 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh------hceEEEEech
Confidence 00 01356899999999887777766667888888887775332222222222221111 1258999999
Q ss_pred CCCCCCCcceecHHHHHHHHHHc--CCCcEEEeeccCCCCHHHHHHHHHHHHhhcCCCCCCCCCccccCCCCCccCCCCC
Q 028654 127 TDVDGGNSRVVSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGC 204 (206)
Q Consensus 127 ~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 204 (206)
+|+.......+..+.+..|.+.. .+.|++++||.-+.|++.+.+.|++.++.... ..-.|....+-.+++..|.||
T Consensus 189 iDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR--df~s~prlIVIRSFDVNkPG~ 266 (466)
T KOG0466|consen 189 IDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR--DFTSPPRLIVIRSFDVNKPGS 266 (466)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc--ccCCCCcEEEEEeeccCCCCc
Confidence 99998766667777777777654 25799999999999999999999999877433 334455555666677777777
Q ss_pred C
Q 028654 205 E 205 (206)
Q Consensus 205 ~ 205 (206)
+
T Consensus 267 e 267 (466)
T KOG0466|consen 267 E 267 (466)
T ss_pred h
Confidence 4
No 314
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.35 E-value=2.3e-11 Score=97.35 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=73.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCc-ccccceeeEEEEEEeCCeEEEEEEeeCCCccccc-------c---cc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQY-KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------S---LG 74 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~---~~ 74 (206)
..++|+++|.+|+||||++|.+++.... ... .+.+ ...........+ ..+.++||||-.... . ..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~T-Tr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGT-TSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCc-eEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 4578999999999999999999987643 222 2222 222222223343 578899999943321 1 11
Q ss_pred cccee--cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 75 VAFYR--GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 75 ~~~~~--~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
..+++ .+|++++|..++.......-..++..+...+...- -..+|||.|+.|..++
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lpp 251 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCCC
Confidence 12333 47999999887632221112244555555554322 2358999999998764
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.35 E-value=2.1e-11 Score=87.84 Aligned_cols=69 Identities=14% Similarity=0.062 Sum_probs=42.0
Q ss_pred EEEEEeeCCCccc-------------cccccccceec-CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 028654 57 FTLQIWDTAGQER-------------FQSLGVAFYRG-ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV 122 (206)
Q Consensus 57 ~~~~i~D~~G~~~-------------~~~~~~~~~~~-~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvii 122 (206)
..++++||||-.. ...+...|+++ .+++++|+|+...-.-.....+...+.. .+.|+++
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~-------~~~rti~ 197 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP-------QGERTIG 197 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH-------cCCcEEE
Confidence 4689999999431 12234456664 5689999988642221222222222221 1679999
Q ss_pred EeeCCCCCCC
Q 028654 123 LGNKTDVDGG 132 (206)
Q Consensus 123 v~nK~D~~~~ 132 (206)
|+||.|....
T Consensus 198 ViTK~D~~~~ 207 (240)
T smart00053 198 VITKLDLMDE 207 (240)
T ss_pred EEECCCCCCc
Confidence 9999998764
No 316
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.34 E-value=2.3e-11 Score=86.31 Aligned_cols=173 Identities=16% Similarity=0.119 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc-------ccccccccceecC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-------RFQSLGVAFYRGA 81 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~~~~~~~~~~~ 81 (206)
.++.++|-|++||||++..+.+..........++.........+.+ -++++.|.||.- ..........+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4889999999999999999988765544444444444444444555 567888999932 2334555667889
Q ss_pred cEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCCC--------------------------------------------
Q 028654 82 DCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPE-------------------------------------------- 116 (206)
Q Consensus 82 d~vi~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------------------------------------- 116 (206)
+.+++|.|+..+-+...+.+ -++.+- ...+..++
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~g-irlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~Da 216 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFG-IRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDA 216 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcce-eeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCc
Confidence 99999999987655444322 111100 00001111
Q ss_pred --------------CCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHH-----h
Q 028654 117 --------------NFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA-----L 177 (206)
Q Consensus 117 --------------~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~-----~ 177 (206)
-+|.+.++||+|... .|++...... ...+++||..+.|++++++.+.+.+ +
T Consensus 217 T~DdLIdvVegnr~yVp~iyvLNkIdsIS-------iEELdii~~i---phavpISA~~~wn~d~lL~~mweyL~LvriY 286 (358)
T KOG1487|consen 217 TADDLIDVVEGNRIYVPCIYVLNKIDSIS-------IEELDIIYTI---PHAVPISAHTGWNFDKLLEKMWEYLKLVRIY 286 (358)
T ss_pred chhhhhhhhccCceeeeeeeeecccceee-------eeccceeeec---cceeecccccccchHHHHHHHhhcchheEEe
Confidence 127888899998653 2333222222 3568899999999999999999854 3
Q ss_pred hcCCCCCCCCCccccCC
Q 028654 178 KNEPQEEDYLPDTIDVG 194 (206)
Q Consensus 178 ~~~~~~~~~~~~~~~~~ 194 (206)
.++...++....++-.+
T Consensus 287 tkPKgq~PDy~~pVvLs 303 (358)
T KOG1487|consen 287 TKPKGQPPDYTSPVVLS 303 (358)
T ss_pred cCCCCCCCCCCCCceec
Confidence 33333444444444333
No 317
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=3.9e-11 Score=89.83 Aligned_cols=84 Identities=23% Similarity=0.161 Sum_probs=63.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCC----------------eEEEEEEeeCCC-----
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED----------------RLFTLQIWDTAG----- 66 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G----- 66 (206)
.++++++|.||+|||||+|+++.........|..|.+.....+.+.. ....+.|+|.+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999999886666777777766665544321 235689999999
Q ss_pred --ccccccccccceecCcEEEEEEECC
Q 028654 67 --QERFQSLGVAFYRGADCCVLVYDVN 91 (206)
Q Consensus 67 --~~~~~~~~~~~~~~~d~vi~v~d~~ 91 (206)
.+.+......-++.+|+++.|+|+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2334444445567899999999987
No 318
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.34 E-value=7.2e-11 Score=87.93 Aligned_cols=144 Identities=14% Similarity=0.219 Sum_probs=87.1
Q ss_pred ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------cccccceeeEEEEEEeCCeEEEEEEeeCCCc------
Q 028654 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQ------ 67 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------ 67 (206)
++...++|+++|+.|+|||||+|.|++...... ..++.....+...+.-++..+.+.++||||-
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence 345689999999999999999999998743221 2233334444455555677889999999991
Q ss_pred ------------cccccccc-------c-ce--ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEee
Q 028654 68 ------------ERFQSLGV-------A-FY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125 (206)
Q Consensus 68 ------------~~~~~~~~-------~-~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~n 125 (206)
++++..+. . .+ ...|+++|.+.++...--..--..+..+.. .+.+|.|+.
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~--------~vNlIPVI~ 170 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK--------RVNLIPVIA 170 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc--------ccCeeeeee
Confidence 11111000 0 11 347899999998753221111233344433 446999999
Q ss_pred CCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (206)
Q Consensus 126 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
|+|..-........+.+.+.....+ +++|.
T Consensus 171 KaD~lT~~El~~~K~~I~~~i~~~n-I~vf~ 200 (373)
T COG5019 171 KADTLTDDELAEFKERIREDLEQYN-IPVFD 200 (373)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHhC-CceeC
Confidence 9998754333333334444444444 77664
No 319
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.33 E-value=5e-12 Score=92.33 Aligned_cols=157 Identities=16% Similarity=0.139 Sum_probs=100.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCc---------cccccccccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ---------ERFQSLGVAF 77 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~ 77 (206)
...-|.|+|.+|+|||||+++|++........-+-+.+.+.......... .+.+.||-|. ..|.+. ..-
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~AT-Lee 254 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQAT-LEE 254 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHH-HHH
Confidence 34578999999999999999999766554444444455544444333322 4567799992 222222 223
Q ss_pred eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
+..+|.++.|.|+++|..-......+..+...--...+....++=|-||+|........+ .+ .-+.+
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E-----------~n--~~v~i 321 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE-----------KN--LDVGI 321 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc-----------cC--Ccccc
Confidence 467999999999999876555555555443332111111224677888998765421111 11 25788
Q ss_pred eccCCCCHHHHHHHHHHHHhh
Q 028654 158 SAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~~~ 178 (206)
|+++|+|++++++.+-.+...
T Consensus 322 saltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 322 SALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred ccccCccHHHHHHHHHHHhhh
Confidence 999999999999998876654
No 320
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.30 E-value=6.2e-11 Score=83.27 Aligned_cols=146 Identities=15% Similarity=0.181 Sum_probs=84.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC---------CcccccceeeEEEEEEeCCeEEEEEEeeCCCcc---cccccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN---------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---RFQSLG 74 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---~~~~~~ 74 (206)
-.|+|+|+|.+|.|||||+|.++...... ....|+........+.-.+...++.++||||-. .....|
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 47899999999999999999998654321 112222333333444556777899999999911 111111
Q ss_pred -----------------------ccce--ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654 75 -----------------------VAFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (206)
Q Consensus 75 -----------------------~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 129 (206)
...+ ...|.++|.+.++..+-..--..++..+.... .++-|+.|+|.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv--------NvvPVIakaDt 196 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV--------NVVPVIAKADT 196 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh--------eeeeeEeeccc
Confidence 1111 24678899998876432211134445554433 48999999997
Q ss_pred CCCCcceecHHHHHHHHHHcCCCcEEEeeccC
Q 028654 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 161 (206)
.--..+....+.++.-....+ +.+++--+.+
T Consensus 197 lTleEr~~FkqrI~~el~~~~-i~vYPq~~fd 227 (336)
T KOG1547|consen 197 LTLEERSAFKQRIRKELEKHG-IDVYPQDSFD 227 (336)
T ss_pred ccHHHHHHHHHHHHHHHHhcC-cccccccccc
Confidence 643333333333333333333 5666554443
No 321
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=2.2e-11 Score=92.29 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=77.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--CCCC--------------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN--RKFS--------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~--~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 66 (206)
...+||-+|.+|||||-..|+- +.+. -+...+.+.......+.|.+ ..+.++||||
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~--~~iNLLDTPG 90 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD--CLVNLLDTPG 90 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC--eEEeccCCCC
Confidence 4678999999999999998752 2110 11122333333344444444 6778899999
Q ss_pred ccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCC
Q 028654 67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (206)
Q Consensus 67 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 131 (206)
+++|.+.+...+..+|.+++|+|+...-..+.+ + +...+... ++|++-++||.|...
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-K----LfeVcrlR---~iPI~TFiNKlDR~~ 147 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-K----LFEVCRLR---DIPIFTFINKLDREG 147 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHH-H----HHHHHhhc---CCceEEEeecccccc
Confidence 999999888888999999999999864322221 2 22233322 889999999999754
No 322
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1.3e-10 Score=87.11 Aligned_cols=147 Identities=16% Similarity=0.260 Sum_probs=86.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------cccccceeeEEEEEEeCCeEEEEEEeeCCCcc-------
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ---------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE------- 68 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------- 68 (206)
+.-.|.++++|++|.|||||+|.|+...+... ...+.........+.-++..++++++||||-.
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 34569999999999999999999987744321 11122333333444446778899999999911
Q ss_pred -----------cccc-------ccccce--ecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCC
Q 028654 69 -----------RFQS-------LGVAFY--RGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127 (206)
Q Consensus 69 -----------~~~~-------~~~~~~--~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~ 127 (206)
++.. ..+..+ ...|+++|.+.++... ..-+ ..++..+.. .+.+|.|+.|+
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D-i~~Mk~l~~--------~vNiIPVI~Ka 168 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD-IEFMKKLSK--------KVNLIPVIAKA 168 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhh-HHHHHHHhc--------cccccceeecc
Confidence 1111 001122 2588999999987532 1112 223333322 56799999999
Q ss_pred CCCCCCcceecHHHHHHHHHHcCCCcEEEeeccC
Q 028654 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161 (206)
Q Consensus 128 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 161 (206)
|...........+.+.+-....+ ++++......
T Consensus 169 D~lT~~El~~~K~~I~~~i~~~n-I~vf~fp~~~ 201 (366)
T KOG2655|consen 169 DTLTKDELNQFKKRIRQDIEEHN-IKVFDFPTDE 201 (366)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcC-cceecCCCCc
Confidence 98764333333333333333433 6666555443
No 323
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.28 E-value=5.7e-10 Score=83.72 Aligned_cols=124 Identities=14% Similarity=0.188 Sum_probs=86.6
Q ss_pred EEEEEeeCCCccccccccccceecCcEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-------SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 129 (206)
..+.++|.+||...+.-|...+.+++++|||+++++.+ ....+.+-+..+...+...--.+.++|+++||.|+
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 67889999999988889999999999999999998632 22334555555666666655557899999999997
Q ss_pred CCC--------------CcceecHHHHHHHHH--------Hc-CCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 130 DGG--------------NSRVVSEKKAKAWCA--------SK-GNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 130 ~~~--------------~~~~~~~~~~~~~~~--------~~-~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
... ... ...++...+.. .. ...-+..+.|.+..+++.+|+.+.+.+.....
T Consensus 275 FeEKi~~~~~~~~Fpdy~G~-~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl 348 (354)
T KOG0082|consen 275 FEEKIKKVPLTDCFPDYKGV-NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL 348 (354)
T ss_pred HHHHhccCchhhhCcCCCCC-CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 431 111 22333322221 11 12345667888889999999999998876543
No 324
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.27 E-value=1e-10 Score=76.31 Aligned_cols=114 Identities=30% Similarity=0.378 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-cccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999997776643332 2222 222233455678999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
++..+.++++.+ |...+.... ..+.|.++++||.|+... .....+... .++++|++++.++.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~----k~dl~~~~~~nk~dl~~~--~~~~~~~~~---------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGN----KSDLPILVGGNRDVLEEE--RQVATEEGL---------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcC----CCCCcEEEEeechhhHhh--CcCCHHHHH---------HHHHHhCCCcchhh
Confidence 999998887654 655554322 125788999999998542 222222222 23456778888774
No 325
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=3.7e-11 Score=95.31 Aligned_cols=116 Identities=24% Similarity=0.273 Sum_probs=82.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc-----------------ccceeeEEEEE---EeCCeEEEEEEeeCC
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA-----------------TIGADFLTKEV---QFEDRLFTLQIWDTA 65 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~i~D~~ 65 (206)
....+++++|+-++|||+|+..|.....+....+ +.+......++ ...++.+-+.++|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 3467899999999999999999987655322111 11111111111 225667889999999
Q ss_pred CccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (206)
Q Consensus 66 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 129 (206)
|+..|...+...++.+|++++++|+.+.-.+..- ..+.... . .+.|+++|+||+|+
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhai----q---~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAI----Q---NRLPIVVVINKVDR 261 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHH----h---ccCcEEEEEehhHH
Confidence 9999999999999999999999999876554432 2222221 1 17799999999995
No 326
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.22 E-value=9.5e-11 Score=86.12 Aligned_cols=57 Identities=18% Similarity=0.086 Sum_probs=41.1
Q ss_pred CCcEEEEeeCCCCCCCCcceecHHHHHHHH-HHcCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028654 117 NFPFVVLGNKTDVDGGNSRVVSEKKAKAWC-ASKGNIPYFETSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 117 ~~pviiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~i~~l~~~i~~~ 175 (206)
..+-++|+||+|+.+. .....+...... ......+++++|+++++|++++.+||.+.
T Consensus 230 ~~ADIVVLNKiDLl~~--~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPY--LNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcc--cHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999753 122233333333 33446899999999999999999999874
No 327
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.22 E-value=2.2e-11 Score=87.16 Aligned_cols=152 Identities=18% Similarity=0.218 Sum_probs=87.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC------CC----CCccccc----------------ceeeEEEEEEeCCe-----
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRK------FS----NQYKATI----------------GADFLTKEVQFEDR----- 55 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~------~~----~~~~~~~----------------~~~~~~~~~~~~~~----- 55 (206)
+.+.|.+.|+||+|||||++.|...- +. +...+.+ ....+...+.-.+.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 46789999999999999999986421 00 0011111 11223333322211
Q ss_pred -------------EEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 028654 56 -------------LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV 122 (206)
Q Consensus 56 -------------~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvii 122 (206)
.+.+.|++|.|--+... ....-+|.+++|.-+...+..+.+..=+.++ .=++
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------------aDi~ 172 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI------------ADIF 172 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------------SEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh------------ccEE
Confidence 25678889888332221 1245689999999988766555543322333 3489
Q ss_pred EeeCCCCCCCCcceecHHHHHHHHHHcC------CCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654 123 LGNKTDVDGGNSRVVSEKKAKAWCASKG------NIPYFETSAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 123 v~nK~D~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~s~~~~~~i~~l~~~i~~~~ 176 (206)
|+||.|...+ .....+++....-.. ..+++.+||.++.|+++|++.|.+..
T Consensus 173 vVNKaD~~gA---~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 173 VVNKADRPGA---DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp EEE--SHHHH---HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEeCCChHHH---HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 9999996553 223333333332211 25899999999999999999998844
No 328
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.15 E-value=1.5e-10 Score=90.01 Aligned_cols=168 Identities=25% Similarity=0.425 Sum_probs=127.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
.-+++|+.|+|..++|||.|+++++.+.|.+...+.. ..+ .+.+.+++....+.+.|.+|.. ...+...+|++
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~-~~~-kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav 99 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG-GRF-KKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV 99 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcC-ccc-eeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence 3468899999999999999999999988876544432 333 4555566766677778888832 23355678999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
||||...+..+++.+..+...+..+.. ...+|.++++++.-......+.+...+...++.......++++.+..|.+
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~---r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGln 176 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRN---ISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLN 176 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccc---cccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhh
Confidence 999999999999988777777655443 33678899998876655555667777777777766668899999999999
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 028654 165 VEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~~~ 182 (206)
+...|..+...+.....+
T Consensus 177 v~rvf~~~~~k~i~~~~~ 194 (749)
T KOG0705|consen 177 VERVFQEVAQKIVQLRKY 194 (749)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999877665444
No 329
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.15 E-value=6.2e-10 Score=80.95 Aligned_cols=161 Identities=16% Similarity=0.145 Sum_probs=95.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC----------CCcccccce----------------eeEEEEEEeCC------
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS----------NQYKATIGA----------------DFLTKEVQFED------ 54 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~----------~~~~~~~~~----------------~~~~~~~~~~~------ 54 (206)
+...|.+.|.||+|||||+..|...... +...+.++. ......+.-.+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 4568999999999999999998653210 111111111 11111111111
Q ss_pred ------------eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 028654 55 ------------RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV 122 (206)
Q Consensus 55 ------------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvii 122 (206)
..+.+.|++|.|.-+... .....+|.++++.=+.-.+..+.+..=+.++ -=++
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi------------aDi~ 194 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEI------------ADII 194 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhh------------hhee
Confidence 135678899998443322 2345689999988777666666554433333 2489
Q ss_pred EeeCCCCCCCCcceecHHHHHHHHH-----HcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654 123 LGNKTDVDGGNSRVVSEKKAKAWCA-----SKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 123 v~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
|+||.|..++............+.. .....+++.+||.+|+|++++++.|.+..-.....
T Consensus 195 vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~s 259 (323)
T COG1703 195 VINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTES 259 (323)
T ss_pred eEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 9999997654221111111111111 12246899999999999999999999876554444
No 330
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.2e-09 Score=80.67 Aligned_cols=180 Identities=19% Similarity=0.156 Sum_probs=114.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcC----------CCC----CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNR----------KFS----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 70 (206)
..+.++|.-||+..-|||||-.++..- .|. .......+.++....+.|.-....+.-.|+||+.+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 456789999999999999998887641 111 112333456677777777766667778899999999
Q ss_pred ccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-cEEEEeeCCCCCCCCccee-cHHHHHHHHHH
Q 028654 71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDGGNSRVV-SEKKAKAWCAS 148 (206)
Q Consensus 71 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pviiv~nK~D~~~~~~~~~-~~~~~~~~~~~ 148 (206)
-..+..-....|+.|+|+.++|....+.-..+ .+.++. ++ .+++.+||.|+.++....+ -..+++++...
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQTrEHl--LLArQV------GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse 202 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQTREHL--LLARQV------GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSE 202 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcchHHHH--HHHHHc------CCceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999985433322221 222222 22 4889999999985432222 22344555555
Q ss_pred cC----CCcEEEeecc---CCC----CHHHHHHHHHHHHhhcCCCCCCCCCccccC
Q 028654 149 KG----NIPYFETSAK---EGF----NVEAAFECIAKNALKNEPQEEDYLPDTIDV 193 (206)
Q Consensus 149 ~~----~~~~~~~s~~---~~~----~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 193 (206)
++ +.|++.-||. ++. |. +....+++++-..-+.++..+...+..
T Consensus 203 ~gf~Gd~~PvI~GSAL~ALeg~~peig~-~aI~kLldavDsyip~P~R~~~~pFl~ 257 (449)
T KOG0460|consen 203 FGFDGDNTPVIRGSALCALEGRQPEIGL-EAIEKLLDAVDSYIPTPERDLDKPFLL 257 (449)
T ss_pred cCCCCCCCCeeecchhhhhcCCCccccH-HHHHHHHHHHhccCCCcccccCCCcee
Confidence 43 5788887765 442 22 234444455544445444444444433
No 331
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.09 E-value=1.2e-09 Score=81.91 Aligned_cols=164 Identities=18% Similarity=0.162 Sum_probs=103.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc--------------ccccceeeEEEEEEeCCe-----------------
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY--------------KATIGADFLTKEVQFEDR----------------- 55 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~----------------- 55 (206)
..+.+.+.|+...|||||+-.|..++..+.. ....+.++....+-+++.
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v 195 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV 195 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence 4678899999999999999998765543211 111222232222222211
Q ss_pred ----EEEEEEeeCCCccccccccccce--ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654 56 ----LFTLQIWDTAGQERFQSLGVAFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (206)
Q Consensus 56 ----~~~~~i~D~~G~~~~~~~~~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 129 (206)
..-+.|+||.|++.|......-+ .+.|..++++-+++.-+...-.. ..+.... ..|+|+++||+|+
T Consensus 196 v~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEH--Lgi~~a~------~lPviVvvTK~D~ 267 (527)
T COG5258 196 VKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH--LGIALAM------ELPVIVVVTKIDM 267 (527)
T ss_pred hhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHh--hhhhhhh------cCCEEEEEEeccc
Confidence 13468999999998876554333 56899999998887443221111 1111111 7899999999999
Q ss_pred CCCCcceecHHHHHHHHHHc------------------------CCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654 130 DGGNSRVVSEKKAKAWCASK------------------------GNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
.+++..+...+++....+.. +-.|++.+|+.+|+|++-|.+. ...+++.
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~-f~~Lp~r 340 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF-FLLLPKR 340 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH-HHhCCcc
Confidence 88765555555555444321 1258999999999999765444 4445444
No 332
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.07 E-value=6e-10 Score=83.37 Aligned_cols=182 Identities=20% Similarity=0.204 Sum_probs=106.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCccccc--ceeeEEEE-----E-------------
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS----------------NQYKATI--GADFLTKE-----V------------- 50 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~----------------~~~~~~~--~~~~~~~~-----~------------- 50 (206)
.+++++|+|...+|||||+-.|...... .+...+. +-++.... +
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 4789999999999999999877543221 0111111 11111000 0
Q ss_pred Ee-CCeEEEEEEeeCCCccccccccccce--ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCC
Q 028654 51 QF-EDRLFTLQIWDTAGQERFQSLGVAFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127 (206)
Q Consensus 51 ~~-~~~~~~~~i~D~~G~~~~~~~~~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~ 127 (206)
.+ .+....++|+|..|++.|......-. +..|..++++-++-.- +....+.+...+ ...+|+++|+||+
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLAL-------aL~VPVfvVVTKI 283 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLAL-------ALHVPVFVVVTKI 283 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhh-------hhcCcEEEEEEee
Confidence 00 11123578999999999887654433 4478888888766311 111111111111 1178999999999
Q ss_pred CCCCCCcceecHHHHHHHHHHcC-------------------------CCcEEEeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654 128 DVDGGNSRVVSEKKAKAWCASKG-------------------------NIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 128 D~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
|+-+++-.++....+..+.++.+ -+|+|.+|..+|+++.-|...+ . ++..+..
T Consensus 284 DMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL-N-lls~R~~ 361 (641)
T KOG0463|consen 284 DMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL-N-LLSLRRQ 361 (641)
T ss_pred ccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH-h-hcCcccc
Confidence 99886555555555555555422 1479999999999987654433 2 3333344
Q ss_pred CCCCCCccccCCCCCc
Q 028654 183 EEDYLPDTIDVGGGQQ 198 (206)
Q Consensus 183 ~~~~~~~~~~~~~~~~ 198 (206)
.++..|..|.+...--
T Consensus 362 ~~E~~PAeFQIDD~Y~ 377 (641)
T KOG0463|consen 362 LNENDPAEFQIDDIYW 377 (641)
T ss_pred cccCCCcceeecceEe
Confidence 4555777777765543
No 333
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.05 E-value=1e-09 Score=77.20 Aligned_cols=96 Identities=24% Similarity=0.246 Sum_probs=65.1
Q ss_pred ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHH--
Q 028654 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC-- 146 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~-- 146 (206)
.+...+..++..+|++++|+|+++... .|...+.... .+.|+++|+||+|+.... ...+....+.
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-----~~~~~ilV~NK~Dl~~~~---~~~~~~~~~~~~ 89 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-----GNNPVILVGNKIDLLPKD---KNLVRIKNWLRA 89 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-----CCCcEEEEEEchhcCCCC---CCHHHHHHHHHH
Confidence 356677788899999999999987432 1222221111 267999999999997532 2223333332
Q ss_pred ---HHcC--CCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654 147 ---ASKG--NIPYFETSAKEGFNVEAAFECIAKNAL 177 (206)
Q Consensus 147 ---~~~~--~~~~~~~s~~~~~~i~~l~~~i~~~~~ 177 (206)
...+ ...++++||+++.|++++++.|.+.+.
T Consensus 90 ~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 90 KAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 2222 236899999999999999999998875
No 334
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2.7e-09 Score=79.88 Aligned_cols=155 Identities=21% Similarity=0.257 Sum_probs=94.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc----------------cccc-------ceeeEEEEEEeC----------
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY----------------KATI-------GADFLTKEVQFE---------- 53 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~----------------~~~~-------~~~~~~~~~~~~---------- 53 (206)
..++++|+|...+|||||+-.|.++...... ..+. +.+.....+.|.
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 4789999999999999999988765432111 1111 111111111111
Q ss_pred CeEEEEEEeeCCCccccccccccceec--CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCC
Q 028654 54 DRLFTLQIWDTAGQERFQSLGVAFYRG--ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (206)
Q Consensus 54 ~~~~~~~i~D~~G~~~~~~~~~~~~~~--~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 131 (206)
....-++|+|..|+..|.......+.. .|.+++++++.....+..- +.+-.+ ... ++|++++++|+|+..
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-EHLgl~-~AL------~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-EHLGLI-AAL------NIPFFVLVTKMDLVD 317 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-HHHHHH-HHh------CCCeEEEEEeecccc
Confidence 112357899999999998877766654 7899999998764443321 111112 111 889999999999987
Q ss_pred CCcceecHHHHHH----------------------HHH---HcCCCcEEEeeccCCCCHHHHH
Q 028654 132 GNSRVVSEKKAKA----------------------WCA---SKGNIPYFETSAKEGFNVEAAF 169 (206)
Q Consensus 132 ~~~~~~~~~~~~~----------------------~~~---~~~~~~~~~~s~~~~~~i~~l~ 169 (206)
.........++.. .++ ..+-.|++.+|+..|+|++-+.
T Consensus 318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 5322222222222 111 1234688999999999987543
No 335
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=2.2e-09 Score=80.12 Aligned_cols=118 Identities=17% Similarity=0.209 Sum_probs=75.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC-cccccceeeEEEEEEeC------Ce-------------------------
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQ-YKATIGADFLTKEVQFE------DR------------------------- 55 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~------~~------------------------- 55 (206)
..=|+++|.-+.||||+++.|+..+++.. ..+..+.++-...+.-+ +.
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 34578999999999999999999988722 12222223323322211 00
Q ss_pred --------EEEEEEeeCCCc-----------cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCC
Q 028654 56 --------LFTLQIWDTAGQ-----------ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPE 116 (206)
Q Consensus 56 --------~~~~~i~D~~G~-----------~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (206)
.-.+.++||||. -.|......++..+|.++++||+...+-.......+..+.. .
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~--- 210 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----H--- 210 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----C---
Confidence 014789999992 12334455677899999999999765444444444444432 2
Q ss_pred CCcEEEEeeCCCCCCC
Q 028654 117 NFPFVVLGNKTDVDGG 132 (206)
Q Consensus 117 ~~pviiv~nK~D~~~~ 132 (206)
.-.+-||+||.|.++.
T Consensus 211 EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 211 EDKIRVVLNKADQVDT 226 (532)
T ss_pred cceeEEEeccccccCH
Confidence 2247889999998753
No 336
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.00 E-value=2.3e-09 Score=72.95 Aligned_cols=95 Identities=22% Similarity=0.157 Sum_probs=62.5
Q ss_pred ccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcC
Q 028654 71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG 150 (206)
Q Consensus 71 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 150 (206)
+......++++|++++|+|++++..... ..+...+. . .+.|+++|+||+|+.... . .+....+....+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~----~---~~~p~iiv~NK~Dl~~~~---~-~~~~~~~~~~~~ 70 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL----E---LGKKLLIVLNKADLVPKE---V-LEKWKSIKESEG 70 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH----h---CCCcEEEEEEhHHhCCHH---H-HHHHHHHHHhCC
Confidence 3455667778999999999987543222 11111111 1 167999999999986421 1 112222323333
Q ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654 151 NIPYFETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 151 ~~~~~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
.+++++|++++.|++++++.|.+.++.
T Consensus 71 -~~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 71 -IPVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred -CcEEEEEccccccHHHHHHHHHHHHhh
Confidence 678999999999999999999988763
No 337
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.96 E-value=6.7e-09 Score=77.50 Aligned_cols=89 Identities=18% Similarity=0.120 Sum_probs=65.8
Q ss_pred cccceecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCC
Q 028654 74 GVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI 152 (206)
Q Consensus 74 ~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 152 (206)
.+..+.++|.+++|+|+.++. ++..+.+|+..+... ++|+++|+||+|+.+. . .......+....+ .
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~-------~ip~iIVlNK~DL~~~--~--~~~~~~~~~~~~g-~ 139 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA-------GIEPVIVLTKADLLDD--E--EEELELVEALALG-Y 139 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc-------CCCEEEEEEHHHCCCh--H--HHHHHHHHHHhCC-C
Confidence 344578999999999999887 777778887765432 6799999999999753 1 1112222233344 7
Q ss_pred cEEEeeccCCCCHHHHHHHHHH
Q 028654 153 PYFETSAKEGFNVEAAFECIAK 174 (206)
Q Consensus 153 ~~~~~s~~~~~~i~~l~~~i~~ 174 (206)
+++.+|++++.|+++++..|..
T Consensus 140 ~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 140 PVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred eEEEEECCCCccHHHHHhhhcc
Confidence 8999999999999999887763
No 338
>PRK12289 GTPase RsgA; Reviewed
Probab=98.95 E-value=9.2e-09 Score=78.44 Aligned_cols=89 Identities=17% Similarity=0.112 Sum_probs=62.9
Q ss_pred cccceecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCC
Q 028654 74 GVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI 152 (206)
Q Consensus 74 ~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 152 (206)
.+..+.++|.+++|+|+.++. ....+..|+..... .++|+++|+||+|+.... . .+.........+ .
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~-------~~ip~ILVlNK~DLv~~~--~--~~~~~~~~~~~g-~ 150 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES-------TGLEIVLCLNKADLVSPT--E--QQQWQDRLQQWG-Y 150 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEchhcCChH--H--HHHHHHHHHhcC-C
Confidence 344578999999999998765 34455666655422 178999999999997431 1 122222223444 6
Q ss_pred cEEEeeccCCCCHHHHHHHHHH
Q 028654 153 PYFETSAKEGFNVEAAFECIAK 174 (206)
Q Consensus 153 ~~~~~s~~~~~~i~~l~~~i~~ 174 (206)
+++++|++++.|+++|++.+..
T Consensus 151 ~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 151 QPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred eEEEEEcCCCCCHHHHhhhhcc
Confidence 8999999999999999988864
No 339
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.93 E-value=3.9e-09 Score=75.95 Aligned_cols=157 Identities=18% Similarity=0.166 Sum_probs=92.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc-ccceeeEEEEEEeCCeEEEEEEeeCCC----------ccccccc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA-TIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSL 73 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 73 (206)
+.....+++.|.+++|||+|+|.++.......... ..+.+.....+.+. ..+.++|.|| ..++...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHh
Confidence 45568999999999999999999987655422222 44443333334333 3677889999 2333444
Q ss_pred cccceec---CcEEEEEEECCChhh-HH-HHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc--ceecHHHHHH--
Q 028654 74 GVAFYRG---ADCCVLVYDVNVMKS-FD-NLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS--RVVSEKKAKA-- 144 (206)
Q Consensus 74 ~~~~~~~---~d~vi~v~d~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--~~~~~~~~~~-- 144 (206)
...|+.+ ---+.+.+|++.+-. .+ ....|+.+. ++|.-+|.||+|...... .......+..
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~----------~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f 279 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN----------NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINF 279 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc----------CCCeEEeeehhhhhhhccccccCccccceeeh
Confidence 4445433 224456677764221 11 124454443 899999999999754321 0111111111
Q ss_pred --HHHH--cCCCcEEEeeccCCCCHHHHHHHHHH
Q 028654 145 --WCAS--KGNIPYFETSAKEGFNVEAAFECIAK 174 (206)
Q Consensus 145 --~~~~--~~~~~~~~~s~~~~~~i~~l~~~i~~ 174 (206)
+.+. ....+.+.+|+.++.|++.|+-.|.+
T Consensus 280 ~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 280 QGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred hhccccceeccCCceeeecccccCceeeeeehhh
Confidence 1111 11246678999999999998877765
No 340
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=3.1e-09 Score=75.00 Aligned_cols=171 Identities=17% Similarity=0.252 Sum_probs=103.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeE--EEEEEeCCeEEEEEEeeCCCccccccc---cccceecCc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFL--TKEVQFEDRLFTLQIWDTAGQERFQSL---GVAFYRGAD 82 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~---~~~~~~~~d 82 (206)
..+|+++|...||||++....+.+-.+. .|.-...+ ...-.+.+.-+.+.+||.||+-.+..- ....++.+-
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPn---eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g 103 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG 103 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCC---ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence 3569999999999999987765543221 11100000 001112233468999999997654332 234578899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH--------cCCCcE
Q 028654 83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS--------KGNIPY 154 (206)
Q Consensus 83 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 154 (206)
++|+|+|+.+. -.+.+..+...+.+... -.+++.+=+.+.|.|-...+.+...+..+.+.... .-.+.|
T Consensus 104 ALifvIDaQdd-y~eala~L~~~v~rayk--vNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf 180 (347)
T KOG3887|consen 104 ALIFVIDAQDD-YMEALARLHMTVERAYK--VNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSF 180 (347)
T ss_pred eEEEEEechHH-HHHHHHHHHHHhhheee--cCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEE
Confidence 99999998752 23334444444444332 23477788999999987654444444333332221 111345
Q ss_pred EEeeccCCCCHHHHHHHHHHHHhhcCCCCCC
Q 028654 155 FETSAKEGFNVEAAFECIAKNALKNEPQEED 185 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~~~~~~~~~~~ 185 (206)
+-+|- -...+-+.|..+++++..+.+.-+.
T Consensus 181 ~LTSI-yDHSIfEAFSkvVQkLipqLptLEn 210 (347)
T KOG3887|consen 181 YLTSI-YDHSIFEAFSKVVQKLIPQLPTLEN 210 (347)
T ss_pred EEeee-cchHHHHHHHHHHHHHhhhchhHHH
Confidence 55555 4458899999999999888776443
No 341
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.92 E-value=1.1e-08 Score=77.85 Aligned_cols=83 Identities=22% Similarity=0.055 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCe---------------EEEEEEeeCCCccc---
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER--- 69 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~--- 69 (206)
++++++|.|++|||||++++++... .....|.++.......+.+.+. ...+.+.|.||-..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999877 5555566666666666655442 23678999999322
Q ss_pred ----cccccccceecCcEEEEEEECC
Q 028654 70 ----FQSLGVAFYRGADCCVLVYDVN 91 (206)
Q Consensus 70 ----~~~~~~~~~~~~d~vi~v~d~~ 91 (206)
........++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223444568899999999985
No 342
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.92 E-value=3.9e-09 Score=70.59 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=36.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 67 (206)
+++++|.+|+|||||+|++.+..... ...+.. +.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGK--TKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCc--ccceEEEEeCC---CEEEEECCCc
Confidence 78999999999999999999876542 222222 22233344443 5789999994
No 343
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.91 E-value=3.5e-09 Score=72.97 Aligned_cols=54 Identities=22% Similarity=0.364 Sum_probs=38.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCeEEEEEEeeCCC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 66 (206)
.++++++|.+|+|||||+|++.+... .....+++|.... .+.++ ..+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~--~~~~~---~~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQ--EVHLD---KKVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceE--EEEeC---CCEEEEECcC
Confidence 47999999999999999999998664 3444444444333 22333 2578999999
No 344
>PRK12288 GTPase RsgA; Reviewed
Probab=98.91 E-value=1.7e-08 Score=76.94 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=65.2
Q ss_pred ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654 77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
.+.++|.+++|++.....++..+..|+..... .++|+++|+||+|+........ .+.........+ .++++
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~-------~~i~~VIVlNK~DL~~~~~~~~-~~~~~~~y~~~g-~~v~~ 187 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET-------LGIEPLIVLNKIDLLDDEGRAF-VNEQLDIYRNIG-YRVLM 187 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh-------cCCCEEEEEECccCCCcHHHHH-HHHHHHHHHhCC-CeEEE
Confidence 35779999999999888888888888765432 1679999999999975421111 122222233444 78999
Q ss_pred eeccCCCCHHHHHHHHHH
Q 028654 157 TSAKEGFNVEAAFECIAK 174 (206)
Q Consensus 157 ~s~~~~~~i~~l~~~i~~ 174 (206)
+|++++.|+++|++.|..
T Consensus 188 vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 188 VSSHTGEGLEELEAALTG 205 (347)
T ss_pred EeCCCCcCHHHHHHHHhh
Confidence 999999999999998865
No 345
>PRK00098 GTPase RsgA; Reviewed
Probab=98.91 E-value=1e-08 Score=76.94 Aligned_cols=87 Identities=20% Similarity=0.155 Sum_probs=62.1
Q ss_pred cceecCcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcE
Q 028654 76 AFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY 154 (206)
Q Consensus 76 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
..+.++|.+++|+|+.++..... +..|+..+.. .++|+++|+||+|+... .. ..+.........+ .++
T Consensus 76 ~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~-------~~ip~iIVlNK~DL~~~--~~-~~~~~~~~~~~~g-~~v 144 (298)
T PRK00098 76 LIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-------NGIKPIIVLNKIDLLDD--LE-EARELLALYRAIG-YDV 144 (298)
T ss_pred ceeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEhHHcCCC--HH-HHHHHHHHHHHCC-CeE
Confidence 34689999999999988765443 4667665532 17799999999999632 11 2223333344444 789
Q ss_pred EEeeccCCCCHHHHHHHHH
Q 028654 155 FETSAKEGFNVEAAFECIA 173 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~ 173 (206)
+++|++++.|++++++.+.
T Consensus 145 ~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 145 LELSAKEGEGLDELKPLLA 163 (298)
T ss_pred EEEeCCCCccHHHHHhhcc
Confidence 9999999999999988764
No 346
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.89 E-value=6.6e-09 Score=76.77 Aligned_cols=88 Identities=24% Similarity=0.207 Sum_probs=66.4
Q ss_pred ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCC---------------eEEEEEEeeCCC--
Q 028654 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED---------------RLFTLQIWDTAG-- 66 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~G-- 66 (206)
+..+.+++.++|.|++|||||+|+|++........|..|.+.....+.+.. ....++++|+.|
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 445678999999999999999999999887777778877777766665422 345789999999
Q ss_pred -----ccccccccccceecCcEEEEEEECC
Q 028654 67 -----QERFQSLGVAFYRGADCCVLVYDVN 91 (206)
Q Consensus 67 -----~~~~~~~~~~~~~~~d~vi~v~d~~ 91 (206)
...+......-++.+|+++-|+++.
T Consensus 96 kGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 96 KGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 2223333444567799999998875
No 347
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.87 E-value=8.8e-09 Score=70.17 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=36.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 66 (206)
...+|+++|.+|+|||||+|+|.+.... ....+.++.. ...+.... .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcC
Confidence 3578899999999999999999986543 2223333222 22222222 367899999
No 348
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=4e-08 Score=77.43 Aligned_cols=139 Identities=14% Similarity=0.143 Sum_probs=85.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
.+++-++|+||+|+|||||+..|..+-......... ....-+.++...++|+.+|.+ ...+....+-+|.++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~-----GPiTvvsgK~RRiTflEcp~D---l~~miDvaKIaDLVl 138 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIR-----GPITVVSGKTRRITFLECPSD---LHQMIDVAKIADLVL 138 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccC-----CceEEeecceeEEEEEeChHH---HHHHHhHHHhhheeE
Confidence 457888899999999999999988653211111111 111124567789999999942 223455677899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHH------HHHHHHcCCCcEEEeec
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA------KAWCASKGNIPYFETSA 159 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~s~ 159 (206)
+++|.+-.-..+.+ .++..+ ..++.+ .++-|+|+.|+..... ..... ..|..-++++.+|.+|.
T Consensus 139 LlIdgnfGfEMETm-EFLnil----~~HGmP--rvlgV~ThlDlfk~~s---tLr~~KKrlkhRfWtEiyqGaKlFylsg 208 (1077)
T COG5192 139 LLIDGNFGFEMETM-EFLNIL----ISHGMP--RVLGVVTHLDLFKNPS---TLRSIKKRLKHRFWTEIYQGAKLFYLSG 208 (1077)
T ss_pred EEeccccCceehHH-HHHHHH----hhcCCC--ceEEEEeecccccChH---HHHHHHHHHhhhHHHHHcCCceEEEecc
Confidence 99999853332322 233333 233222 3789999999976421 11111 23444556688888887
Q ss_pred cCC
Q 028654 160 KEG 162 (206)
Q Consensus 160 ~~~ 162 (206)
..+
T Consensus 209 V~n 211 (1077)
T COG5192 209 VEN 211 (1077)
T ss_pred ccc
Confidence 643
No 349
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.80 E-value=2.6e-08 Score=76.69 Aligned_cols=96 Identities=22% Similarity=0.229 Sum_probs=67.9
Q ss_pred ccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH--
Q 028654 67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA-- 144 (206)
Q Consensus 67 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~-- 144 (206)
++++......+.+.++++++|+|+.+.. ..|...+..... +.|+++|+||+|+.+. ....+.+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-----~~piilV~NK~DLl~k---~~~~~~~~~~l 116 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-----GNPVLLVGNKIDLLPK---SVNLSKIKEWM 116 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-----CCCEEEEEEchhhCCC---CCCHHHHHHHH
Confidence 5677777788888999999999997643 234444444432 5689999999999753 222333333
Q ss_pred --HHHHcCC--CcEEEeeccCCCCHHHHHHHHHHH
Q 028654 145 --WCASKGN--IPYFETSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 145 --~~~~~~~--~~~~~~s~~~~~~i~~l~~~i~~~ 175 (206)
++...+. ..++.+||+++.|++++++.|.+.
T Consensus 117 ~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 117 KKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 3444442 258999999999999999999764
No 350
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.80 E-value=4.4e-08 Score=76.39 Aligned_cols=119 Identities=15% Similarity=0.160 Sum_probs=74.9
Q ss_pred EEEEEeeCCCccccccccccceecCcEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-------SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 129 (206)
..+.++|.+|+...+.-|..++.+++++|||+++++-. ....+..-+..+...+......+.|+++++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 57789999999988899999999999999999987421 11223333334444444333347899999999995
Q ss_pred CC-----CC----------cc-eecHHHHHHHHHH--------c---CCCcEEEeeccCCCCHHHHHHHHHHH
Q 028654 130 DG-----GN----------SR-VVSEKKAKAWCAS--------K---GNIPYFETSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 130 ~~-----~~----------~~-~~~~~~~~~~~~~--------~---~~~~~~~~s~~~~~~i~~l~~~i~~~ 175 (206)
.. .. .. ....+....+... . ..+.+..++|.+..++..+|+.+.+.
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence 21 11 01 1233333333321 1 11245577888888888888887764
No 351
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.79 E-value=9.6e-09 Score=72.23 Aligned_cols=54 Identities=20% Similarity=0.379 Sum_probs=36.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC---------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKF---------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 66 (206)
..+++++|.+|+|||||+|+|.+... .....+++|... ..+.+.. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDL--IKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeee--EEEecCC---CCEEEeCcC
Confidence 35799999999999999999997542 223334433333 3333332 468999999
No 352
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.76 E-value=1.3e-07 Score=68.09 Aligned_cols=88 Identities=14% Similarity=0.141 Sum_probs=54.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCcc-cccceeeEEEEEEeC-CeEEEEEEeeCCCcccccc------cc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNR--KFSNQYK-ATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQS------LG 74 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~------~~ 74 (206)
..+..-|.|+|++++|||||+|.|++. .+..... ...|..+..+...+. +....+.++||+|...... ..
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 345567889999999999999999998 5542221 222233333333221 2346899999999433221 12
Q ss_pred ccceec--CcEEEEEEECCC
Q 028654 75 VAFYRG--ADCCVLVYDVNV 92 (206)
Q Consensus 75 ~~~~~~--~d~vi~v~d~~~ 92 (206)
...+.. ++++||..+...
T Consensus 84 ~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 84 LFALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHhCEEEEeccCcc
Confidence 233334 888888888764
No 353
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=3.6e-08 Score=79.77 Aligned_cols=116 Identities=19% Similarity=0.193 Sum_probs=78.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC------------CC--CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF------------SN--QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 71 (206)
....+++++.+...|||||+..|..... .+ ....+.+.+.....+...-..+.+.++|+||+-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 3467899999999999999999875432 11 111222333333334444456788999999999999
Q ss_pred cccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654 72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (206)
Q Consensus 72 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 129 (206)
+....+..-+|++++.+|+...-..+.. .+.+++... +...++|+||+|.
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~-----~vlrq~~~~---~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTY-----AVLRQAWIE---GLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHH-----HHHHHHHHc---cCceEEEEehhhh
Confidence 9999999999999999999864322221 111111111 5578999999993
No 354
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.76 E-value=3e-08 Score=68.49 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=38.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 67 (206)
..++++++|.+|+|||||+|++.+..+. ....+.++ .....+.+. ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T--~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVT--KGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEE--eeeEEEEec---CCEEEEECCCC
Confidence 3478999999999999999999987653 22223333 333333333 35789999993
No 355
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.72 E-value=4.7e-08 Score=72.66 Aligned_cols=56 Identities=23% Similarity=0.436 Sum_probs=39.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 67 (206)
..++++++|.+|+|||||+|+|.+.... ....+++|... ..+.+.. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence 4689999999999999999999986543 33334433332 3333332 5689999995
No 356
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.72 E-value=6.3e-08 Score=72.40 Aligned_cols=56 Identities=21% Similarity=0.431 Sum_probs=39.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 67 (206)
..++++++|.+|+|||||+|+|.+... .....++.|... ..+..+. .+.++||||.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK---GLELLDTPGI 176 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC---cEEEEECCCc
Confidence 467999999999999999999998764 233344443333 2333332 5779999994
No 357
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.6e-07 Score=73.42 Aligned_cols=118 Identities=21% Similarity=0.276 Sum_probs=70.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc-ccccceeeE---------------------------------------
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY-KATIGADFL--------------------------------------- 46 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~--------------------------------------- 46 (206)
...||++.|..++||||++|+++.....+.. .+++.+-..
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 3568999999999999999999876543221 111100000
Q ss_pred ---EEEEEeCCeE-----EEEEEeeCCC---ccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC
Q 028654 47 ---TKEVQFEDRL-----FTLQIWDTAG---QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDP 115 (206)
Q Consensus 47 ---~~~~~~~~~~-----~~~~i~D~~G---~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (206)
...+-+.... -.+.++|.|| ..+...........+|++|+|.++.+..+... ..++... ...
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~v----s~~-- 260 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKV----SEE-- 260 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHh----hcc--
Confidence 0000011110 1468899999 44555556667788999999999987554433 2333333 221
Q ss_pred CCCcEEEEeeCCCCCCC
Q 028654 116 ENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 116 ~~~pviiv~nK~D~~~~ 132 (206)
+..++|+.||.|...+
T Consensus 261 -KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 261 -KPNIFILNNKWDASAS 276 (749)
T ss_pred -CCcEEEEechhhhhcc
Confidence 3347777888898755
No 358
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.71 E-value=5.9e-08 Score=67.05 Aligned_cols=91 Identities=22% Similarity=0.139 Sum_probs=60.0
Q ss_pred cccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC
Q 028654 72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN 151 (206)
Q Consensus 72 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
......++.+|++++|+|++++...... .+.. ... +.|+++|+||+|+.+. . ......++.....
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~----~~~-----~k~~ilVlNK~Dl~~~--~--~~~~~~~~~~~~~- 75 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEK----ILG-----NKPRIIVLNKADLADP--K--KTKKWLKYFESKG- 75 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCCh-hhHh----Hhc-----CCCEEEEEehhhcCCh--H--HHHHHHHHHHhcC-
Confidence 4456677899999999999865432211 1111 111 5689999999999642 1 1111112222222
Q ss_pred CcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654 152 IPYFETSAKEGFNVEAAFECIAKNAL 177 (206)
Q Consensus 152 ~~~~~~s~~~~~~i~~l~~~i~~~~~ 177 (206)
..++.+|++++.|++++.+.+.+.+.
T Consensus 76 ~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 76 EKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 56899999999999999999998764
No 359
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.71 E-value=9.8e-08 Score=64.99 Aligned_cols=91 Identities=13% Similarity=0.081 Sum_probs=56.7
Q ss_pred cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEE
Q 028654 76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF 155 (206)
Q Consensus 76 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (206)
..++.+|++++|+|+.++..... ..+...+... ..+.|+++|+||+|+.+. ....+....+..... ...+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~-----~~~~p~ilVlNKiDl~~~---~~~~~~~~~~~~~~~-~~~~ 73 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKE-----KPHKHLIFVLNKCDLVPT---WVTARWVKILSKEYP-TIAF 73 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccC-HHHHHHHHhc-----cCCCCEEEEEEchhcCCH---HHHHHHHHHHhcCCc-EEEE
Confidence 35678999999999987632211 1222222211 115799999999999643 111122222222222 2357
Q ss_pred EeeccCCCCHHHHHHHHHHHH
Q 028654 156 ETSAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 156 ~~s~~~~~~i~~l~~~i~~~~ 176 (206)
++|++++.|++++++.+.+.+
T Consensus 74 ~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 74 HASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred EeeccccccHHHHHHHHHHHH
Confidence 899999999999999997754
No 360
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.70 E-value=4.7e-08 Score=66.41 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=38.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCeEEEEEEeeCCC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 66 (206)
...+++++|.+|+|||||+|.+.+... .....+.++...... ... ..+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~--~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEV--KLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEE--Eec---CCEEEEECCC
Confidence 457899999999999999999998653 233344444443332 222 3578999999
No 361
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=5.3e-08 Score=70.28 Aligned_cols=118 Identities=20% Similarity=0.343 Sum_probs=72.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccc----cceeeEEEEEEeCCeEEEEEEeeCCC-------cccccccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKAT----IGADFLTKEVQFEDRLFTLQIWDTAG-------QERFQSLG 74 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~D~~G-------~~~~~~~~ 74 (206)
.-.++|+-+|.+|.|||||++.|++-.+...+.+. .........+.-.+..++++++||.| .+.+....
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 34789999999999999999999988776443333 22233333333456778899999999 11111111
Q ss_pred -------ccc-------------e--ecCcEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCCCCCcEEEEeeCCCCCC
Q 028654 75 -------VAF-------------Y--RGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (206)
Q Consensus 75 -------~~~-------------~--~~~d~vi~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 131 (206)
..| + ...++++|.+.++.. ++..+.- .+..+.. .+.+|-|+.|.|...
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Lds--------kVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLDS--------KVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHhh--------hhhhHHHHHHhhhhh
Confidence 111 1 346899999998853 2222211 1222222 456888899999764
Q ss_pred C
Q 028654 132 G 132 (206)
Q Consensus 132 ~ 132 (206)
.
T Consensus 191 K 191 (406)
T KOG3859|consen 191 K 191 (406)
T ss_pred H
Confidence 3
No 362
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=7.8e-08 Score=76.16 Aligned_cols=119 Identities=22% Similarity=0.201 Sum_probs=79.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC-----C-----------cccccceeeEEEEEEeCCeEEEEEEeeCCCcccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN-----Q-----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 70 (206)
...+|.+.-+-.+||||+-++++...... . .....+.++...-.....+...+.++||||+-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 45688889999999999999876422110 0 0011122333333333444688999999999999
Q ss_pred ccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC
Q 028654 71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN 133 (206)
Q Consensus 71 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~ 133 (206)
.-.....++-.|++++++|+...-..+...-| .++.++ ++|.+..+||.|..++.
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~ry-------~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTETVW-RQMKRY-------NVPRICFINKMDRMGAS 172 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHHHH-HHHHhc-------CCCeEEEEehhhhcCCC
Confidence 99999999999999999998754332332223 223322 88999999999987643
No 363
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.66 E-value=6.7e-08 Score=73.20 Aligned_cols=55 Identities=22% Similarity=0.400 Sum_probs=39.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 67 (206)
.++++++|.|++|||||||+|.++... ....|+.| -....+.... .+.++||||.
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~T--k~~q~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTT--KGIQWIKLDD---GIYLLDTPGI 187 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCcee--cceEEEEcCC---CeEEecCCCc
Confidence 478999999999999999999998753 34444433 3333343333 3789999993
No 364
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.66 E-value=1.1e-07 Score=64.67 Aligned_cols=55 Identities=25% Similarity=0.291 Sum_probs=36.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 66 (206)
..+++++|.+++|||||+|++.+... ....++.+.+.....+..+. .+.+|||||
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 56889999999999999999987553 22233333332222222222 688999999
No 365
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.63 E-value=2.8e-07 Score=80.87 Aligned_cols=113 Identities=23% Similarity=0.327 Sum_probs=64.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCc----cc--ccceeeEEEEEEeCCeEEEEEEeeCCC----cc----cccccccc
Q 028654 11 VIILGDSGVGKTSLMNQYVNRKFSNQY----KA--TIGADFLTKEVQFEDRLFTLQIWDTAG----QE----RFQSLGVA 76 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~----~~~~~~~~ 76 (206)
.+|+|++|+||||++..- +..++-.. .. +.+.+. ....-+.+ ...++||+| ++ .....+..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 479999999999999876 33333111 11 111111 12222333 345889999 21 11222333
Q ss_pred ce---------ecCcEEEEEEECCCh-----hhH----HHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 77 FY---------RGADCCVLVYDVNVM-----KSF----DNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 77 ~~---------~~~d~vi~v~d~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
++ ...|++|+++|+.+- +.. ..+...+.++...+.. ..||.+++||+|+...
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~----~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA----RFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC----CCCEEEEEecchhhcC
Confidence 33 348999999998752 111 1233344444444433 7899999999998864
No 366
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.63 E-value=3.1e-07 Score=62.42 Aligned_cols=84 Identities=19% Similarity=0.091 Sum_probs=53.6
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccC
Q 028654 82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161 (206)
Q Consensus 82 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 161 (206)
|++++|+|+.++.+... .++.. ..... .+.|+++|+||+|+.+. . ...+....+.... ...++.+|+++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~--~~~~~---~~~p~IiVlNK~Dl~~~--~-~~~~~~~~~~~~~-~~~ii~vSa~~ 69 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER--VLIKE---KGKKLILVLNKADLVPK--E-VLRKWLAYLRHSY-PTIPFKISATN 69 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH--HHHhc---CCCCEEEEEechhcCCH--H-HHHHHHHHHHhhC-CceEEEEeccC
Confidence 68999999987654432 22221 11111 16799999999999642 1 1111122232222 36789999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028654 162 GFNVEAAFECIAKNA 176 (206)
Q Consensus 162 ~~~i~~l~~~i~~~~ 176 (206)
+.|++++++.|.+..
T Consensus 70 ~~gi~~L~~~i~~~~ 84 (155)
T cd01849 70 GQGIEKKESAFTKQT 84 (155)
T ss_pred CcChhhHHHHHHHHh
Confidence 999999999987754
No 367
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.62 E-value=3.6e-08 Score=66.52 Aligned_cols=24 Identities=42% Similarity=0.710 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
-.++++|++|+|||||+|.|....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 367899999999999999999863
No 368
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.58 E-value=2.8e-07 Score=62.78 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028654 11 VIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
++++|..|+|||||++.+...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578999999999999998765
No 369
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.56 E-value=3e-07 Score=68.42 Aligned_cols=102 Identities=22% Similarity=0.206 Sum_probs=65.8
Q ss_pred CCCcc-ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHH
Q 028654 64 TAGQE-RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA 142 (206)
Q Consensus 64 ~~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~ 142 (206)
.|||. .........++.+|++++|+|+..+.+... ..+..+ .. +.|+++|+||+|+.+.. . .+..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~---l~-----~kp~IiVlNK~DL~~~~---~-~~~~ 69 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEI---RG-----NKPRLIVLNKADLADPA---V-TKQW 69 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHH---HC-----CCCEEEEEEccccCCHH---H-HHHH
Confidence 45643 233445667889999999999987544322 111111 11 56999999999996421 1 1111
Q ss_pred HHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654 143 KAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 143 ~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
..+....+ .+++.+|++++.|++++.+.+.+.+.+..
T Consensus 70 ~~~~~~~~-~~vi~iSa~~~~gi~~L~~~i~~~~~~~~ 106 (276)
T TIGR03596 70 LKYFEEKG-IKALAINAKKGKGVKKIIKAAKKLLKEKN 106 (276)
T ss_pred HHHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHhh
Confidence 11222223 57899999999999999999988876543
No 370
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.55 E-value=1.3e-06 Score=68.14 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 028654 8 LLKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~ 29 (206)
+.-|+++|++||||||++..|.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999998885
No 371
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.54 E-value=5.9e-06 Score=63.56 Aligned_cols=176 Identities=15% Similarity=0.181 Sum_probs=98.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC--------------CCCcccccceeeEE----------EEEEe-CCeEEEEEEe
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKF--------------SNQYKATIGADFLT----------KEVQF-EDRLFTLQIW 62 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~--------------~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~i~ 62 (206)
.+-|+|+||..+|||||+.+|...-+ ...+++..+.++.. ..+.+ ++..+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 46789999999999999999976322 12222222222221 12223 4567888999
Q ss_pred eCCCc----------cc---------ccccc----------ccce--ecCcEEEEEEECCC----hhhHHHH-HHHHHHH
Q 028654 63 DTAGQ----------ER---------FQSLG----------VAFY--RGADCCVLVYDVNV----MKSFDNL-NNWREEF 106 (206)
Q Consensus 63 D~~G~----------~~---------~~~~~----------~~~~--~~~d~vi~v~d~~~----~~~~~~~-~~~~~~~ 106 (206)
||-|- ++ |.... +..+ +..-++++.-|.+- ++.+..+ .+...++
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 99990 00 00000 0111 22337777777652 3343333 4444555
Q ss_pred HHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCCCC-CC
Q 028654 107 LIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE-ED 185 (206)
Q Consensus 107 ~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~~-~~ 185 (206)
... ++|+++++|-.+-. .....+...++...++ ++++++++.+- .-+++..-+.+.+++-+-.+ +-
T Consensus 177 k~i-------gKPFvillNs~~P~----s~et~~L~~eL~ekY~-vpVlpvnc~~l-~~~DI~~Il~~vLyEFPV~Ei~~ 243 (492)
T PF09547_consen 177 KEI-------GKPFVILLNSTKPY----SEETQELAEELEEKYD-VPVLPVNCEQL-REEDITRILEEVLYEFPVSEINI 243 (492)
T ss_pred HHh-------CCCEEEEEeCCCCC----CHHHHHHHHHHHHHhC-CcEEEeehHHc-CHHHHHHHHHHHHhcCCceEEEe
Confidence 443 78999999987633 3355556666666776 89999888643 33444444444444443332 23
Q ss_pred CCCccccCCCC
Q 028654 186 YLPDTIDVGGG 196 (206)
Q Consensus 186 ~~~~~~~~~~~ 196 (206)
.+|.|+..=..
T Consensus 244 ~lP~Wve~L~~ 254 (492)
T PF09547_consen 244 NLPKWVEMLED 254 (492)
T ss_pred ecchHHhhcCC
Confidence 36776655444
No 372
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.54 E-value=1.4e-06 Score=68.71 Aligned_cols=82 Identities=15% Similarity=0.213 Sum_probs=49.6
Q ss_pred EEEEeeCCCc-------------cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEe
Q 028654 58 TLQIWDTAGQ-------------ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124 (206)
Q Consensus 58 ~~~i~D~~G~-------------~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~ 124 (206)
...++|.||. +....+...+..+.+++|+|+--..-+. -......+-..+. +-+...|+|+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA---ERSnVTDLVsq~D---P~GrRTIfVL 486 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA---ERSIVTDLVSQMD---PHGRRTIFVL 486 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch---hhhhHHHHHHhcC---CCCCeeEEEE
Confidence 5688999991 2233344567788999999985432211 1111122222223 3377899999
Q ss_pred eCCCCCCCCcceecHHHHHHHHH
Q 028654 125 NKTDVDGGNSRVVSEKKAKAWCA 147 (206)
Q Consensus 125 nK~D~~~~~~~~~~~~~~~~~~~ 147 (206)
||.|+.+. .....+.++.+..
T Consensus 487 TKVDlAEk--nlA~PdRI~kIle 507 (980)
T KOG0447|consen 487 TKVDLAEK--NVASPSRIQQIIE 507 (980)
T ss_pred eecchhhh--ccCCHHHHHHHHh
Confidence 99999875 3455566666554
No 373
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.53 E-value=6.1e-07 Score=67.80 Aligned_cols=95 Identities=18% Similarity=0.078 Sum_probs=52.6
Q ss_pred EEEEEEeeCCCccccccc----cccc--------eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 028654 56 LFTLQIWDTAGQERFQSL----GVAF--------YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL 123 (206)
Q Consensus 56 ~~~~~i~D~~G~~~~~~~----~~~~--------~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv 123 (206)
.+.+.++||||....... .... -...+..++|+|++... ..+.. ...+.... .+.-+|
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~~-------~~~giI 265 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEAV-------GLTGII 265 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhhC-------CCCEEE
Confidence 357899999995332211 1111 12467889999998532 22221 12222111 145789
Q ss_pred eeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHH
Q 028654 124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169 (206)
Q Consensus 124 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~ 169 (206)
+||.|..... -.+-......+ .|+..++ +|++++++.
T Consensus 266 lTKlD~t~~~------G~~l~~~~~~~-~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 266 LTKLDGTAKG------GVVFAIADELG-IPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EECCCCCCCc------cHHHHHHHHHC-CCEEEEe--CCCChhhCc
Confidence 9999965321 12223333444 7888888 777777664
No 374
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.53 E-value=2.7e-06 Score=56.76 Aligned_cols=56 Identities=30% Similarity=0.407 Sum_probs=38.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 65 (206)
+..+|.+-|+||+||||++..+...--... ..-..+....+.-+++..-|.++|+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC---ceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 457999999999999999988875431111 11234555566667777777788877
No 375
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=3.7e-08 Score=74.90 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=86.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC--------CCC--------CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRK--------FSN--------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 71 (206)
..+|.++..-.+||||.-.+++.-. +.. ......+.++...-+.++.+..++.++||||+.+|+
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 4589999999999999998876421 110 011123456666677777777899999999999999
Q ss_pred cccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 72 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
-.....++-.|+++.|||++..-..+.+.-|... +.-++|.+.++||+|...+
T Consensus 117 leverclrvldgavav~dasagve~qtltvwrqa--------dk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA--------DKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceeeeehhc--------cccCCchhhhhhhhhhhhh
Confidence 9899999999999999999865444444444322 2227899999999998754
No 376
>PRK01889 GTPase RsgA; Reviewed
Probab=98.48 E-value=1.5e-06 Score=66.94 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=58.9
Q ss_pred ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654 77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
.+.++|.+++|+++...-....+.+++..+... +++.++|+||+|+.+. .. +....+......++++.
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~-------~i~piIVLNK~DL~~~--~~---~~~~~~~~~~~g~~Vi~ 176 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES-------GAEPVIVLTKADLCED--AE---EKIAEVEALAPGVPVLA 176 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc-------CCCEEEEEEChhcCCC--HH---HHHHHHHHhCCCCcEEE
Confidence 368899999999997444444556665554432 6788999999999753 11 12222222233478999
Q ss_pred eeccCCCCHHHHHHHHH
Q 028654 157 TSAKEGFNVEAAFECIA 173 (206)
Q Consensus 157 ~s~~~~~~i~~l~~~i~ 173 (206)
+|++++.|+++|..++.
T Consensus 177 vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 177 VSALDGEGLDVLAAWLS 193 (356)
T ss_pred EECCCCccHHHHHHHhh
Confidence 99999999999888874
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.46 E-value=9e-07 Score=65.52 Aligned_cols=96 Identities=15% Similarity=0.059 Sum_probs=53.9
Q ss_pred EEEEEEeeCCCccccccccc-------cce-----ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 028654 56 LFTLQIWDTAGQERFQSLGV-------AFY-----RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL 123 (206)
Q Consensus 56 ~~~~~i~D~~G~~~~~~~~~-------~~~-----~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv 123 (206)
.+.+.++||||......... ... ..+|.+++|+|++... +.+. ....+.+.. + +.-+|
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~------~-~~g~I 223 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV------G-LTGII 223 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC------C-CCEEE
Confidence 36789999999543322211 111 2388999999997432 2222 122332222 1 35788
Q ss_pred eeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHH
Q 028654 124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170 (206)
Q Consensus 124 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~ 170 (206)
+||.|..... -..-.+....+ .|+..++ +|++++++..
T Consensus 224 lTKlDe~~~~------G~~l~~~~~~~-~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 224 LTKLDGTAKG------GIILSIAYELK-LPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred EEccCCCCCc------cHHHHHHHHHC-cCEEEEe--CCCChHhCcc
Confidence 9999975432 12223333344 7777777 6777776543
No 378
>PRK14974 cell division protein FtsY; Provisional
Probab=98.46 E-value=2.9e-07 Score=69.78 Aligned_cols=94 Identities=18% Similarity=0.123 Sum_probs=52.6
Q ss_pred EEEEEeeCCCcccccc----ccccc--eecCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654 57 FTLQIWDTAGQERFQS----LGVAF--YRGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 129 (206)
..+.++||+|...... ..... ....|.+++|+|+..... ...+ ..+.... + .--+|+||.|.
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~------~-~~giIlTKlD~ 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV------G-IDGVILTKVDA 291 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC------C-CCEEEEeeecC
Confidence 4689999999543221 11111 135788999999875322 2222 2222111 1 35788999998
Q ss_pred CCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHH
Q 028654 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~ 170 (206)
..... .+-......+ .|+..++ +|++++++..
T Consensus 292 ~~~~G------~~ls~~~~~~-~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 DAKGG------AALSIAYVIG-KPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCcc------HHHHHHHHHC-cCEEEEe--CCCChhhccc
Confidence 64321 1222222333 7778777 7888877653
No 379
>PRK12288 GTPase RsgA; Reviewed
Probab=98.46 E-value=5.4e-07 Score=68.87 Aligned_cols=22 Identities=45% Similarity=0.758 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028654 11 VIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~ 32 (206)
++++|.+|+|||||+|+|.+..
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 6899999999999999999764
No 380
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.45 E-value=7e-07 Score=59.67 Aligned_cols=76 Identities=20% Similarity=0.145 Sum_probs=48.8
Q ss_pred ccceecCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCC
Q 028654 75 VAFYRGADCCVLVYDVNVMKSFD--NLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI 152 (206)
Q Consensus 75 ~~~~~~~d~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 152 (206)
...+..+|++++|+|+.++.+.. .+..|+... . .+.|+++|+||+|+.+. . ............+ .
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~----~~k~~iivlNK~DL~~~--~--~~~~~~~~~~~~~-~ 72 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D----PRKKNILLLNKADLLTE--E--QRKAWAEYFKKEG-I 72 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c----CCCcEEEEEechhcCCH--H--HHHHHHHHHHhcC-C
Confidence 34567899999999998765433 233333221 1 26799999999999643 1 1223333344444 6
Q ss_pred cEEEeeccCCC
Q 028654 153 PYFETSAKEGF 163 (206)
Q Consensus 153 ~~~~~s~~~~~ 163 (206)
.++++|+.++.
T Consensus 73 ~ii~iSa~~~~ 83 (141)
T cd01857 73 VVVFFSALKEN 83 (141)
T ss_pred eEEEEEecCCC
Confidence 78999998765
No 381
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.42 E-value=6.4e-07 Score=69.08 Aligned_cols=54 Identities=26% Similarity=0.469 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 67 (206)
.+++++|.+|+|||||+|+|.+... .....|.+|.... .+...+ .+.++||||-
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~---~~~l~DtPG~ 214 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDD---GHSLYDTPGI 214 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCC---CCEEEECCCC
Confidence 4799999999999999999997532 2333444443332 333322 3468999994
No 382
>PRK13796 GTPase YqeH; Provisional
Probab=98.42 E-value=1.6e-06 Score=66.94 Aligned_cols=93 Identities=26% Similarity=0.351 Sum_probs=59.8
Q ss_pred ccccccccceecCc-EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHH--
Q 028654 69 RFQSLGVAFYRGAD-CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW-- 145 (206)
Q Consensus 69 ~~~~~~~~~~~~~d-~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~-- 145 (206)
.+..... .+...+ .+++|+|+.+.. ..|...+..... +.|+++|+||+|+.+. ....+.+..+
T Consensus 58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-----~kpviLViNK~DLl~~---~~~~~~i~~~l~ 123 (365)
T PRK13796 58 DFLKLLN-GIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-----NNPVLLVGNKADLLPK---SVKKNKVKNWLR 123 (365)
T ss_pred HHHHHHH-hhcccCcEEEEEEECccCC-----CchhHHHHHHhC-----CCCEEEEEEchhhCCC---ccCHHHHHHHHH
Confidence 4444333 334445 999999998633 233444444332 5689999999999753 2223333333
Q ss_pred --HHHcCC--CcEEEeeccCCCCHHHHHHHHHHH
Q 028654 146 --CASKGN--IPYFETSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 146 --~~~~~~--~~~~~~s~~~~~~i~~l~~~i~~~ 175 (206)
+...+. ..++.+||+++.|++++++.|.+.
T Consensus 124 ~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 124 QEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred HHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 333331 268999999999999999999775
No 383
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.40 E-value=1.1e-06 Score=65.76 Aligned_cols=101 Identities=20% Similarity=0.197 Sum_probs=65.8
Q ss_pred CCCcc-ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHH
Q 028654 64 TAGQE-RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA 142 (206)
Q Consensus 64 ~~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~ 142 (206)
.|||. .........++.+|++++|+|+..+.+... .++..+ .. +.|+++|+||+|+.+. ...+..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~---~~-----~kp~iiVlNK~DL~~~----~~~~~~ 72 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKI---IG-----NKPRLLILNKSDLADP----EVTKKW 72 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHH---hC-----CCCEEEEEEchhcCCH----HHHHHH
Confidence 56743 223445667889999999999987544322 111221 11 5689999999999642 111122
Q ss_pred HHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654 143 KAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 143 ~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
..+....+ .+++.+|++++.|++++.+.+.+.+.+.
T Consensus 73 ~~~~~~~~-~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 73 IEYFEEQG-IKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred HHHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 22222323 6789999999999999999998887654
No 384
>PRK13796 GTPase YqeH; Provisional
Probab=98.39 E-value=6.3e-07 Score=69.19 Aligned_cols=55 Identities=24% Similarity=0.353 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 68 (206)
.++.++|.+|+|||||+|+|..... .....|++|.+. ..+.+++ ...++||||-.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~--~~~~l~~---~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK--IEIPLDD---GSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee--EEEEcCC---CcEEEECCCcc
Confidence 4789999999999999999985431 123344444433 3333333 23689999953
No 385
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.39 E-value=8.6e-07 Score=64.72 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|.+|+|||||+|+|.+..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 57899999999999999998753
No 386
>PRK12289 GTPase RsgA; Reviewed
Probab=98.38 E-value=7.1e-07 Score=68.25 Aligned_cols=22 Identities=41% Similarity=0.736 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028654 11 VIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~ 32 (206)
++++|++|+|||||+|+|.+..
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcc
Confidence 7899999999999999998654
No 387
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.30 E-value=1.5e-06 Score=64.10 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=34.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 71 (206)
-.+++|.+|+|||||+|+|..... ......+.-++.....+.+.+.. .++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 457889999999999999986321 11111111122223333342211 367999976543
No 388
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.30 E-value=4.1e-06 Score=58.34 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=63.2
Q ss_pred EEEEeeCCCcccccccc---ccce---e---cCcEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCC
Q 028654 58 TLQIWDTAGQERFQSLG---VAFY---R---GADCCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127 (206)
Q Consensus 58 ~~~i~D~~G~~~~~~~~---~~~~---~---~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~ 127 (206)
.+.++|+|||-+.-... ...+ + -.-.++|++|..- -++...+...+..+..+... .+|-|=|++|.
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~l----E~P~INvlsKM 174 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISL----EVPHINVLSKM 174 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHh----cCcchhhhhHH
Confidence 46789999976543222 1111 1 1225566666532 22334445555555555444 67899999999
Q ss_pred CCCCCCcce----------e-----------c------HHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654 128 DVDGGNSRV----------V-----------S------EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 128 D~~~~~~~~----------~-----------~------~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~ 176 (206)
|+......+ . + ...+..+...++-+.|++....+.+.++.++..|-.++
T Consensus 175 DLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 175 DLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 987541100 0 0 00011122233445788888877888888877776654
No 389
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.9e-06 Score=65.52 Aligned_cols=158 Identities=17% Similarity=0.138 Sum_probs=95.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCcccccceeeEEEEEEeCC
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFED 54 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (206)
...++++++|...+||||+-..+..... ...+...-+....... +.-
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~--FEt 154 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAY--FET 154 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEE--EEe
Confidence 4578999999999999998777654211 0111111111111122 222
Q ss_pred eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChh---hHHHH-HH-HHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK---SFDNL-NN-WREEFLIQASPSDPENFPFVVLGNKTDV 129 (206)
Q Consensus 55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---~~~~~-~~-~~~~~~~~~~~~~~~~~pviiv~nK~D~ 129 (206)
....+++.|.||+..|-..+..-...||+.++|+++...+ .|+.- +. -...+.+... -...|+++||+|-
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-----v~~lVv~vNKMdd 229 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-----VKHLIVLINKMDD 229 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-----cceEEEEEEeccC
Confidence 2357889999999999998888889999999999985321 12211 00 0111222211 2358999999997
Q ss_pred CCCCcceecHHHHH----HHHHHc-----CCCcEEEeeccCCCCHHHHHH
Q 028654 130 DGGNSRVVSEKKAK----AWCASK-----GNIPYFETSAKEGFNVEAAFE 170 (206)
Q Consensus 130 ~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~s~~~~~~i~~l~~ 170 (206)
+..+-..+.+++.. .|.... ....|+++|..+|.++++..+
T Consensus 230 PtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 230 PTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 65433333344333 333321 246799999999999998765
No 390
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.27 E-value=3.6e-06 Score=59.31 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=46.7
Q ss_pred EEEEEeeCCCcccccc----ccccce--ecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654 57 FTLQIWDTAGQERFQS----LGVAFY--RGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 129 (206)
..+.++||+|...... .+..++ ...+-+++|++++... ....+.. +...+. +-=+++||.|.
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~----~~~~~~-------~~~lIlTKlDe 152 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA----FYEAFG-------IDGLILTKLDE 152 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH----HHHHSS-------TCEEEEESTTS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH----Hhhccc-------CceEEEEeecC
Confidence 4688999999433221 122211 2477899999988543 2222222 222221 23567999997
Q ss_pred CCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
... .-.+-.+....+ .|+-.++ +|.+++
T Consensus 153 t~~------~G~~l~~~~~~~-~Pi~~it--~Gq~V~ 180 (196)
T PF00448_consen 153 TAR------LGALLSLAYESG-LPISYIT--TGQRVD 180 (196)
T ss_dssp SST------THHHHHHHHHHT-SEEEEEE--SSSSTT
T ss_pred CCC------cccceeHHHHhC-CCeEEEE--CCCChh
Confidence 543 223333444444 5666555 444443
No 391
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.27 E-value=1.8e-06 Score=62.03 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=51.5
Q ss_pred EEEEEEeeCCCccccccccccceecCcEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-------SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (206)
Q Consensus 56 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 128 (206)
.++++.+|.+|+.+-+..|...+...-++|||+..++.. +-..+++-+..+.....+.-...+.+|+.+||.|
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence 367899999999998999999999999999999887421 1122333333333222222222567999999999
Q ss_pred CC
Q 028654 129 VD 130 (206)
Q Consensus 129 ~~ 130 (206)
+.
T Consensus 281 ll 282 (379)
T KOG0099|consen 281 LL 282 (379)
T ss_pred HH
Confidence 74
No 392
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.24 E-value=1.8e-05 Score=63.24 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
-.|+++|++|+||||++..|..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999988764
No 393
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.22 E-value=2.2e-06 Score=67.00 Aligned_cols=54 Identities=26% Similarity=0.300 Sum_probs=40.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 66 (206)
.+.|++||-||+||||+||+|.+.... .+..|+.|..+....+ .. .+.+.||||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l--s~---~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL--SP---SVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc--CC---CceecCCCC
Confidence 589999999999999999999987643 4555555555544433 32 567789999
No 394
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=1e-05 Score=63.45 Aligned_cols=119 Identities=17% Similarity=0.200 Sum_probs=76.0
Q ss_pred ccceeeEEEEEcCCCCCHHHHHHHHhcCCC------------C----CCcccccceeeEEEEEE--------------eC
Q 028654 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKF------------S----NQYKATIGADFLTKEVQ--------------FE 53 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~------------~----~~~~~~~~~~~~~~~~~--------------~~ 53 (206)
.+.+..++.|+.+...|||||-..|..+.. . ++.....+.......+. -+
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d 94 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD 94 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence 445677889999999999999999875422 1 11222222222111111 12
Q ss_pred CeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (206)
Q Consensus 54 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 130 (206)
+..+.+.++|.||+.+|.+....+++-.|++++|+|.-+.--.+.-.-+...+ .. .+.-++++||.|..
T Consensus 95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~----~E----RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAI----AE----RIKPVLVMNKMDRA 163 (842)
T ss_pred CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHH----Hh----hccceEEeehhhHH
Confidence 34577899999999999999999999999999999987532111111111111 11 44457889999954
No 395
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.19 E-value=5.5e-06 Score=62.00 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKF 33 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~ 33 (206)
..++++|++|+|||||+|.|.+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 4689999999999999999987643
No 396
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.16 E-value=6.6e-06 Score=55.35 Aligned_cols=58 Identities=22% Similarity=0.201 Sum_probs=36.3
Q ss_pred EEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (206)
Q Consensus 56 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 128 (206)
.+.+.|+||+|.... ...++..+|-++++..++-.+....+ +. ..+ ...=++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~-k~-~~~----------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAI-KA-GIM----------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHh-hh-hHh----------hhcCEEEEeCCC
Confidence 367899999985422 23477889999999888732222211 11 111 223589999998
No 397
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=8.9e-06 Score=70.41 Aligned_cols=113 Identities=22% Similarity=0.287 Sum_probs=60.1
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC--CCcc-ccc-ceeeEEEEEEeCCeEEEEEEeeCCC----cc----ccccccccc--
Q 028654 12 IILGDSGVGKTSLMNQYVNRKFS--NQYK-ATI-GADFLTKEVQFEDRLFTLQIWDTAG----QE----RFQSLGVAF-- 77 (206)
Q Consensus 12 ~viG~~~~GKStli~~l~~~~~~--~~~~-~~~-~~~~~~~~~~~~~~~~~~~i~D~~G----~~----~~~~~~~~~-- 77 (206)
+|||++|+||||++..-. ..|+ .... ... +........-+.+ .-.++||.| ++ .....+..+
T Consensus 129 ~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 129 MVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred EEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence 689999999999986532 2222 1100 000 0001111122233 446789999 21 122233322
Q ss_pred -------eecCcEEEEEEECCCh-----hhHHH----HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 78 -------YRGADCCVLVYDVNVM-----KSFDN----LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 78 -------~~~~d~vi~v~d~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
.+..|+||+.+|+++- ..... +..-+.++...... ..||.+++||.|+.+.
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~----~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA----RLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc----CCceEEEEeccccccc
Confidence 2458999999998751 11111 12222333333322 7899999999999864
No 398
>PRK00098 GTPase RsgA; Reviewed
Probab=98.13 E-value=6.6e-06 Score=61.92 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|++|+|||||+|+|.+..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999998754
No 399
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.11 E-value=2.9e-05 Score=59.79 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
-.++++|++|+||||++..|...
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999998753
No 400
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.11 E-value=1.8e-05 Score=43.24 Aligned_cols=44 Identities=25% Similarity=0.202 Sum_probs=29.3
Q ss_pred cCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654 80 GADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (206)
Q Consensus 80 ~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 128 (206)
-.++++|++|++... +.+.-..++.++...+. +.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-----~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-----NKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-----TS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-----CCCEEEEEeccC
Confidence 478999999999754 44555567777887776 789999999998
No 401
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.10 E-value=1e-05 Score=57.34 Aligned_cols=70 Identities=11% Similarity=0.058 Sum_probs=38.9
Q ss_pred EEEEEeeCCCcccccccc------ccceecCcEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEe
Q 028654 57 FTLQIWDTAGQERFQSLG------VAFYRGADCCVLVYDVN------VMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~~~------~~~~~~~d~vi~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~ 124 (206)
....++|+|||-++-... ...+.+.+.-+.++... ++. ..+..++..+..+... ..|-+=|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~--~~iS~lL~sl~tMl~m----elphVNvl 170 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPS--KFISSLLVSLATMLHM----ELPHVNVL 170 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChH--HHHHHHHHHHHHHHhh----cccchhhh
Confidence 356789999976543322 12233455444444433 333 3344444555444443 56778889
Q ss_pred eCCCCCCC
Q 028654 125 NKTDVDGG 132 (206)
Q Consensus 125 nK~D~~~~ 132 (206)
.|+|+...
T Consensus 171 SK~Dl~~~ 178 (290)
T KOG1533|consen 171 SKADLLKK 178 (290)
T ss_pred hHhHHHHh
Confidence 99997643
No 402
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.08 E-value=5.4e-05 Score=56.09 Aligned_cols=91 Identities=20% Similarity=0.108 Sum_probs=63.5
Q ss_pred ccceecCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCc
Q 028654 75 VAFYRGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIP 153 (206)
Q Consensus 75 ~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (206)
+-.+.+.|-+++++.+.+++- ...+.+++...... ++..+|++||+|+........ ++........+ ++
T Consensus 74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~-------gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~~~g-y~ 143 (301)
T COG1162 74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG-------GIEPVIVLNKIDLLDDEEAAV--KELLREYEDIG-YP 143 (301)
T ss_pred CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc-------CCcEEEEEEccccCcchHHHH--HHHHHHHHhCC-ee
Confidence 334456777788888877653 44456665554332 677888899999987633222 44555566666 89
Q ss_pred EEEeeccCCCCHHHHHHHHHHH
Q 028654 154 YFETSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 154 ~~~~s~~~~~~i~~l~~~i~~~ 175 (206)
++.+|++++.+++++.+.+...
T Consensus 144 v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 144 VLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred EEEecCcCcccHHHHHHHhcCC
Confidence 9999999999999998877653
No 403
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.07 E-value=5e-05 Score=52.53 Aligned_cols=66 Identities=24% Similarity=0.129 Sum_probs=37.4
Q ss_pred EEEEEeeCCCcccccc----ccccce--ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654 57 FTLQIWDTAGQERFQS----LGVAFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 130 (206)
..+.++|+||...... ...... ...+.+++|+|+..... ...+...+.... + ..-+|.||.|..
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~------~-~~~viltk~D~~ 152 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL------G-ITGVILTKLDGD 152 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC------C-CCEEEEECCcCC
Confidence 4578899999643221 111111 24899999999865332 122333333222 2 256778999976
Q ss_pred CC
Q 028654 131 GG 132 (206)
Q Consensus 131 ~~ 132 (206)
..
T Consensus 153 ~~ 154 (173)
T cd03115 153 AR 154 (173)
T ss_pred CC
Confidence 53
No 404
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.07 E-value=8.1e-06 Score=64.23 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~ 29 (206)
.+..|+++|++|+||||++..|.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 35678999999999999988775
No 405
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=6.2e-05 Score=58.12 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
+..|+++|++|+||||++..|..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 46789999999999999999863
No 406
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.06 E-value=3.8e-05 Score=52.74 Aligned_cols=135 Identities=22% Similarity=0.312 Sum_probs=62.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeC-CCc---------------------
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT-AGQ--------------------- 67 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~--------------------- 67 (206)
+|.+.|++|+|||||++.++..--.. ..+. ..++...+.-.+...-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v--~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPV--GGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGE--EEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCcc--ceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68899999999999999987542110 0111 2233333334445555555555 331
Q ss_pred -cccccccccce----ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCC-CCCCCCcceecHHH
Q 028654 68 -ERFQSLGVAFY----RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT-DVDGGNSRVVSEKK 141 (206)
Q Consensus 68 -~~~~~~~~~~~----~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~-D~~~~~~~~~~~~~ 141 (206)
+.+.......+ ..+| ++++|--.+--+ ....|...+...+.. +.|++.++-+. +.. .
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s----~~~vi~vv~~~~~~~----------~ 140 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDS----NKPVIGVVHKRSDNP----------F 140 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCT----TSEEEEE--SS--SC----------C
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcC----CCcEEEEEecCCCcH----------H
Confidence 11111112222 2344 777775432111 113445555555442 66788777666 321 2
Q ss_pred HHHHHHHcCCCcEEEeeccCCCCH
Q 028654 142 AKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 142 ~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
++.+....+ ..++.++..+.+.+
T Consensus 141 l~~i~~~~~-~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 141 LEEIKRRPD-VKIFEVTEENRDAL 163 (168)
T ss_dssp HHHHHTTTT-SEEEE--TTTCCCH
T ss_pred HHHHHhCCC-cEEEEeChhHHhhH
Confidence 333334444 77777776655544
No 407
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=2.6e-05 Score=60.97 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
-.++++|+.|+||||++..|.+.
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999987653
No 408
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.03 E-value=1e-05 Score=57.20 Aligned_cols=122 Identities=11% Similarity=0.131 Sum_probs=69.7
Q ss_pred EEEEEeeCCCccccccccccceecCcEEEEEEECCCh----------hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeC
Q 028654 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM----------KSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK 126 (206)
+.+.++|.+|+..-+..|...+.+.-.+++++..+.. ...+.-..++..+..+.+.. +.++|+++||
T Consensus 199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~---nssVIlFLNK 275 (359)
T KOG0085|consen 199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ---NSSVILFLNK 275 (359)
T ss_pred heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccccc---CCceEEEech
Confidence 4566788888877777777777666666665554421 11122222334444333322 6789999999
Q ss_pred CCCCCC--------------CcceecHHHHHHHHHH----cC-----CCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 127 TDVDGG--------------NSRVVSEKKAKAWCAS----KG-----NIPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 127 ~D~~~~--------------~~~~~~~~~~~~~~~~----~~-----~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
.|+.+. ...+.+.+..++|... .+ .+--..+.|.+.+|+..+|..+.+.++...-
T Consensus 276 kDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 276 KDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred hhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence 998542 1123333334443322 11 0123346677888999888888777765443
No 409
>PRK10867 signal recognition particle protein; Provisional
Probab=98.01 E-value=7.1e-05 Score=58.92 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=18.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 028654 8 LLKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~ 29 (206)
+.-|+++|++|+||||++..|.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 5678899999999999766554
No 410
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.99 E-value=0.00014 Score=55.14 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=49.3
Q ss_pred EEEEEeeCCCccccccccccce--------ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654 57 FTLQIWDTAGQERFQSLGVAFY--------RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~~~~~~~--------~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 128 (206)
....++++.|..+-......+. -..++++.|+|+.+..... ..+ ..+..+... .=+||+||+|
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~--~~~-~~~~~Qi~~------AD~IvlnK~D 161 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM--NQF-TIAQSQVGY------ADRILLTKTD 161 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhc--ccc-HHHHHHHHh------CCEEEEeccc
Confidence 4567888999543333222221 1257899999997532211 111 111111111 2488999999
Q ss_pred CCCCCcceecHHHHHHHHHHcC-CCcEEEeeccCCCCHHHHH
Q 028654 129 VDGGNSRVVSEKKAKAWCASKG-NIPYFETSAKEGFNVEAAF 169 (206)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~l~ 169 (206)
+... .+.+....+..+ .++++.++ ........++
T Consensus 162 l~~~------~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 162 VAGE------AEKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred cCCH------HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 9863 134555444443 45555443 2333444444
No 411
>PRK13695 putative NTPase; Provisional
Probab=97.99 E-value=0.00033 Score=48.51 Aligned_cols=21 Identities=43% Similarity=0.619 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
+|++.|++|+|||||+..+.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998654
No 412
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.95 E-value=9.3e-05 Score=56.99 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=76.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC---CCcccccceeeEEE---------------EEE--eC----------CeEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTK---------------EVQ--FE----------DRLF 57 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~---------------~~~--~~----------~~~~ 57 (206)
.-.|+++||+|+||||-+-.|..+..- .......+.+.+.. .+. ++ -...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 456889999999999988887654320 11111111111110 000 00 1135
Q ss_pred EEEEeeCCCccccccc----ccccee--cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEeeCCCCC
Q 028654 58 TLQIWDTAGQERFQSL----GVAFYR--GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGNKTDVD 130 (206)
Q Consensus 58 ~~~i~D~~G~~~~~~~----~~~~~~--~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~D~~ 130 (206)
.+.++||.|...+... +..++. ...-+.+|++++.. ..++...+..+ .. .|+ =+++||.|-.
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f----~~-----~~i~~~I~TKlDET 351 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQF----SL-----FPIDGLIFTKLDET 351 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHh----cc-----CCcceeEEEccccc
Confidence 7899999995444332 222332 23455677777642 23343333333 32 232 4779999965
Q ss_pred CCCcceecHHHHHHHHHHcCCCcEEEeeccC--CCCHHH-HHHHHHHHHhhcCC
Q 028654 131 GGNSRVVSEKKAKAWCASKGNIPYFETSAKE--GFNVEA-AFECIAKNALKNEP 181 (206)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~i~~-l~~~i~~~~~~~~~ 181 (206)
.. .-.+-......+ .|+..++.-. .+++.. --+++++.+.....
T Consensus 352 ~s------~G~~~s~~~e~~-~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~ 398 (407)
T COG1419 352 TS------LGNLFSLMYETR-LPVSYVTNGQRVPEDIVVANPDYLVRRILGTFA 398 (407)
T ss_pred Cc------hhHHHHHHHHhC-CCeEEEeCCCCCCchhhhcChHHHHHHHhcccc
Confidence 32 233333333433 5555444221 123332 23556666655443
No 413
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.95 E-value=7.2e-05 Score=58.98 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.++++|++|+||||++..|..
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999998877643
No 414
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.94 E-value=0.00014 Score=57.29 Aligned_cols=86 Identities=23% Similarity=0.104 Sum_probs=45.9
Q ss_pred EEEEEeeCCCcccccc----cccc--ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654 57 FTLQIWDTAGQERFQS----LGVA--FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~----~~~~--~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 130 (206)
+.+.|+||||...... .... ..-..+.+++|+|+... +....+...+..... ..=+|+||.|..
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v~-------i~giIlTKlD~~ 252 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERLG-------LTGVVLTKLDGD 252 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhCC-------CCEEEEeCccCc
Confidence 5689999999432221 1111 12247888999998743 233333344432221 235779999954
Q ss_pred CCCcceecHHHHHHHHHHcCCCcEEEeec
Q 028654 131 GGNSRVVSEKKAKAWCASKGNIPYFETSA 159 (206)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (206)
.. .-.+.......+ .|+..++.
T Consensus 253 ~~------~G~~lsi~~~~~-~PI~fi~~ 274 (428)
T TIGR00959 253 AR------GGAALSVRSVTG-KPIKFIGV 274 (428)
T ss_pred cc------ccHHHHHHHHHC-cCEEEEeC
Confidence 22 112444444444 56555553
No 415
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=9.8e-05 Score=57.36 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
+..|+++|++|+||||.+..+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999988763
No 416
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.93 E-value=0.00039 Score=52.73 Aligned_cols=101 Identities=17% Similarity=0.017 Sum_probs=53.9
Q ss_pred EEEEEeeCCCcccccccccc--------ceecCcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCcEEEEeeCC
Q 028654 57 FTLQIWDTAGQERFQSLGVA--------FYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKT 127 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~~~~~--------~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~ 127 (206)
+...++.+.|-..-...... ..-..|+++-|+|+..-..... ... .+..+.. ..=+||+||.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~---~~~~Qia------~AD~ivlNK~ 155 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAE---LAEDQLA------FADVIVLNKT 155 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHH---HHHHHHH------hCcEEEEecc
Confidence 45677888882211111111 1124688999999986333221 212 2222221 1248999999
Q ss_pred CCCCCCcceecHHHHHHHHHHc-CCCcEEEeeccCCCCHHHHHHH
Q 028654 128 DVDGGNSRVVSEKKAKAWCASK-GNIPYFETSAKEGFNVEAAFEC 171 (206)
Q Consensus 128 D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~l~~~ 171 (206)
|+..+. ..+..+...+.. ..++++.++. ...+..+++..
T Consensus 156 Dlv~~~----~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~~ 195 (323)
T COG0523 156 DLVDAE----ELEALEARLRKLNPRARIIETSY-GDVDLAELLDE 195 (323)
T ss_pred cCCCHH----HHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhcc
Confidence 999752 245555555544 3567777776 44444444443
No 417
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.92 E-value=3.2e-05 Score=53.76 Aligned_cols=80 Identities=19% Similarity=0.162 Sum_probs=40.8
Q ss_pred EEEEEeeCCCcccccccc--cc---ceecCcEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654 57 FTLQIWDTAGQERFQSLG--VA---FYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKTDVD 130 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~~~--~~---~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 130 (206)
....|+.+.|...-.... .. ..-..+.++.|+|+........+.. +..++ . ..=++|+||+|+.
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi----~------~ADvIvlnK~D~~ 154 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQI----A------FADVIVLNKIDLV 154 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHH----C------T-SEEEEE-GGGH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcc----h------hcCEEEEeccccC
Confidence 466778888833322220 00 0123678999999976433333322 22222 2 2348899999997
Q ss_pred CCCcceecHHHHHHHHHHc
Q 028654 131 GGNSRVVSEKKAKAWCASK 149 (206)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~ 149 (206)
+.. ...+..+...+..
T Consensus 155 ~~~---~~i~~~~~~ir~l 170 (178)
T PF02492_consen 155 SDE---QKIERVREMIREL 170 (178)
T ss_dssp HHH-----HHHHHHHHHHH
T ss_pred Chh---hHHHHHHHHHHHH
Confidence 641 2224455544443
No 418
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.00011 Score=52.80 Aligned_cols=115 Identities=21% Similarity=0.326 Sum_probs=71.3
Q ss_pred eEEEEEcCCCC--CHHHHHHHHhcCCCCCCcccccceeeEEEEEEe--CCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 9 LKVIILGDSGV--GKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF--EDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 9 ~~i~viG~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
..++|+|.+|+ ||.+|+++|....+.....+.....+..+++.. ....+.+.+.-.. ++.+.... .......++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic-de~~lpn~-~~a~pl~a~ 82 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC-DEKFLPNA-EIAEPLQAF 82 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc-chhccCCc-ccccceeeE
Confidence 46789999998 999999999988887655555545555444321 1122333332211 12222111 122345688
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-cEEEEeeCCCCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDGG 132 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pviiv~nK~D~~~~ 132 (206)
+++||.+....+..++.|+..... ... ..+.++||.|.++.
T Consensus 83 vmvfdlse~s~l~alqdwl~htdi-------nsfdillcignkvdrvph 124 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQDWLPHTDI-------NSFDILLCIGNKVDRVPH 124 (418)
T ss_pred EEEEeccchhhhHHHHhhcccccc-------ccchhheecccccccccc
Confidence 999999998888888888764311 122 24678999998764
No 419
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.90 E-value=1.2e-05 Score=61.19 Aligned_cols=57 Identities=25% Similarity=0.409 Sum_probs=40.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 67 (206)
...++++|+|-|++||||+||+|..+..- ....++.|. ....+..+. .+.|+|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~--smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTR--SMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchh--hhhheeccC---CceeccCCce
Confidence 45789999999999999999999987653 333444433 333333333 6788999993
No 420
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=0.00016 Score=60.46 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
--|+++|+.|+||||++..|...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 35789999999999999998753
No 421
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.89 E-value=2.1e-05 Score=58.04 Aligned_cols=59 Identities=22% Similarity=0.352 Sum_probs=37.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC------CCcccccceeeEEEEEEeCCeEEEEEEeeCCC
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 66 (206)
...++++|+|.||+|||||+|++...... ....++.+..+... +.+..+. .+.++||||
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp-~vy~iDTPG 205 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRP-PVYLIDTPG 205 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCC-ceEEecCCC
Confidence 45789999999999999999998653322 23334443333221 2333322 467889999
No 422
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.87 E-value=9.6e-05 Score=49.20 Aligned_cols=106 Identities=19% Similarity=0.192 Sum_probs=58.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCC
Q 028654 13 ILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV 92 (206)
Q Consensus 13 viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~ 92 (206)
.-|..|+||||+.-.+...-.. ......-.+. ........+.+.++|+|+.. .......+..+|.++++.+.+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~---D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAK-LGKRVLLLDA---DLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEEC---CCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence 4478899999997665432110 0000000000 00001111678999999843 2333567888999999999874
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654 93 MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (206)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 130 (206)
.++..+...+..+.... ...++.+|+|+.+..
T Consensus 79 -~s~~~~~~~l~~l~~~~-----~~~~~~lVvN~~~~~ 110 (139)
T cd02038 79 -TSITDAYALIKKLAKQL-----RVLNFRVVVNRAESP 110 (139)
T ss_pred -hHHHHHHHHHHHHHHhc-----CCCCEEEEEeCCCCH
Confidence 33444444444443322 144688999999743
No 423
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.85 E-value=0.00017 Score=57.45 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
--++++|+.|+||||++..|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 3578999999999999999875
No 424
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=7.5e-05 Score=57.40 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.-.++++|+.|+||||++..+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999988764
No 425
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.76 E-value=2.5e-05 Score=50.57 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999765
No 426
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.76 E-value=0.0001 Score=52.51 Aligned_cols=48 Identities=21% Similarity=0.211 Sum_probs=30.6
Q ss_pred ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCC-CcEEEEeeCCCCC
Q 028654 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN-FPFVVLGNKTDVD 130 (206)
Q Consensus 75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pviiv~nK~D~~ 130 (206)
+.....+|.+|+|+|++-. ++....+. ..+... . + .++.+|+||.|-.
T Consensus 150 Rg~~~~vD~vivVvDpS~~-sl~taeri-~~L~~e---l---g~k~i~~V~NKv~e~ 198 (255)
T COG3640 150 RGTIEGVDLVIVVVDPSYK-SLRTAERI-KELAEE---L---GIKRIFVVLNKVDEE 198 (255)
T ss_pred cccccCCCEEEEEeCCcHH-HHHHHHHH-HHHHHH---h---CCceEEEEEeeccch
Confidence 3456789999999999853 33333222 222222 2 4 5899999999843
No 427
>PRK08118 topology modulation protein; Reviewed
Probab=97.75 E-value=2.6e-05 Score=53.59 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
+|+|+|++|||||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998765
No 428
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.75 E-value=0.00012 Score=46.06 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=48.4
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654 11 VIILG-DSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 11 i~viG-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 89 (206)
|.+.| ..|+||||+...+...-.. ...+ ...+..+. .+.+.++|+|+..... ....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~-------vl~~d~d~-~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKR-------VLLIDLDP-QYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCc-------EEEEeCCC-CCCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 45666 5699999998776543211 0011 11111111 1678899999964322 3366778999999998
Q ss_pred CCChhhHHHHHHHHH
Q 028654 90 VNVMKSFDNLNNWRE 104 (206)
Q Consensus 90 ~~~~~~~~~~~~~~~ 104 (206)
.+. .+...+..++.
T Consensus 71 ~~~-~s~~~~~~~~~ 84 (104)
T cd02042 71 PSP-LDLDGLEKLLE 84 (104)
T ss_pred CCH-HHHHHHHHHHH
Confidence 863 34455555544
No 429
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.70 E-value=4.7e-05 Score=42.71 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028654 11 VIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
.++.|+.|+|||||+.++.-.
T Consensus 26 tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999997643
No 430
>PRK07261 topology modulation protein; Provisional
Probab=97.70 E-value=3.5e-05 Score=53.20 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
+|+|+|++|||||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999998654
No 431
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.68 E-value=0.00033 Score=43.09 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=44.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc-cccceecCcEEEEEEE
Q 028654 11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-GVAFYRGADCCVLVYD 89 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~vi~v~d 89 (206)
+++.|..|+||||+...+...-... + +.... ++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g--~~v~~--~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR------G--KRVLL--ID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC------C--CeEEE--EC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 5788999999999998876543110 0 01111 11 7788999985533221 1445667899999998
Q ss_pred CCCh
Q 028654 90 VNVM 93 (206)
Q Consensus 90 ~~~~ 93 (206)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 8743
No 432
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.68 E-value=3.4e-05 Score=53.50 Aligned_cols=22 Identities=32% Similarity=0.782 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
+|+|+|+|||||||+...|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999887
No 433
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.65 E-value=0.0018 Score=49.78 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028654 11 VIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
.++.|.-|||||||++.++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 467799999999999999864
No 434
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.65 E-value=4.3e-05 Score=54.93 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028654 11 VIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~ 32 (206)
++++|++|||||||++.+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6799999999999999988754
No 435
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.64 E-value=0.00065 Score=50.29 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
-+++++|++|+||||++..+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5899999999999999887754
No 436
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.63 E-value=4.8e-05 Score=50.77 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028654 11 VIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~ 32 (206)
|+++|++|||||||+..+....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 6899999999999999997543
No 437
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.62 E-value=5e-05 Score=54.25 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|++|||||||+|.+.+-+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 36899999999999999987654
No 438
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.61 E-value=2.3e-05 Score=59.70 Aligned_cols=82 Identities=17% Similarity=0.121 Sum_probs=49.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc--ccccccccceecC
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--RFQSLGVAFYRGA 81 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--~~~~~~~~~~~~~ 81 (206)
....+.|.+||.|++||||+||.|-.+.+. ..+.++.+.-.... .. ...+-++|+||.. .........+
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYI--tL---mkrIfLIDcPGvVyps~dset~ivL--- 375 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYI--TL---MKRIFLIDCPGVVYPSSDSETDIVL--- 375 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHH--HH---HhceeEecCCCccCCCCCchHHHHh---
Confidence 345789999999999999999999887654 33444433211111 11 1356788999932 1122233332
Q ss_pred cEEEEEEECCChh
Q 028654 82 DCCVLVYDVNVMK 94 (206)
Q Consensus 82 d~vi~v~d~~~~~ 94 (206)
-+++=|=.+.+++
T Consensus 376 kGvVRVenv~~pe 388 (572)
T KOG2423|consen 376 KGVVRVENVKNPE 388 (572)
T ss_pred hceeeeeecCCHH
Confidence 3556666666654
No 439
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00025 Score=55.39 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
.-++++|++||||||++..|..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999988864
No 440
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.56 E-value=7.2e-05 Score=52.64 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++||+|||||||++.+.+-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 57899999999999999886543
No 441
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.55 E-value=5e-05 Score=52.16 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
.=+++.||+|+|||||+++|....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 346788999999999999998876
No 442
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.54 E-value=9.2e-05 Score=42.89 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028654 11 VIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998765
No 443
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.53 E-value=0.0014 Score=53.02 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028654 11 VIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~ 32 (206)
+++.||+||||||.++.|....
T Consensus 48 LlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 48 LLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999999999988653
No 444
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.50 E-value=6e-05 Score=51.58 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999865
No 445
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.49 E-value=0.00084 Score=44.47 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~ 32 (206)
...+++.|++|+|||+|++.+....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999998764
No 446
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.48 E-value=0.00045 Score=45.34 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-|++.|+.|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998764
No 447
>PRK14530 adenylate kinase; Provisional
Probab=97.48 E-value=0.00011 Score=52.82 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+|+|+|++||||||+.+.|...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999988653
No 448
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.46 E-value=0.00014 Score=51.93 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
....|+|.|++|||||||++.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998764
No 449
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.46 E-value=0.00011 Score=48.60 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 57899999999999999987764
No 450
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.44 E-value=0.00076 Score=50.25 Aligned_cols=104 Identities=13% Similarity=0.230 Sum_probs=58.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCc-------------------
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ------------------- 67 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------------------- 67 (206)
...+++++|++|.|||+++++|....... ..... . .+.+..+.+|..
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~~-~------------~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDEDA-E------------RIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCCC-c------------cccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 34678999999999999999998765322 11111 0 112333344431
Q ss_pred -----cccccccccceecCcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCC
Q 028654 68 -----ERFQSLGVAFYRGADCCVLVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127 (206)
Q Consensus 68 -----~~~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~ 127 (206)
..........++...+=++++|--+. .+...-..++..++...+.. ++|++.|||+-
T Consensus 126 ~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL---~ipiV~vGt~~ 190 (302)
T PF05621_consen 126 PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL---QIPIVGVGTRE 190 (302)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc---CCCeEEeccHH
Confidence 11111223445667788999996431 22333344555555443333 78999998753
No 451
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.43 E-value=3.7e-05 Score=63.50 Aligned_cols=102 Identities=12% Similarity=0.071 Sum_probs=58.7
Q ss_pred EEEEEeeCCC-------------ccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 028654 57 FTLQIWDTAG-------------QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL 123 (206)
Q Consensus 57 ~~~~i~D~~G-------------~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv 123 (206)
..++++|+|| ..+...+...++...+.+|+.+.+.+.+- ....++... ...++.+..++.|
T Consensus 132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~--ats~alkia----revDp~g~RTigv 205 (657)
T KOG0446|consen 132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDI--ATSPALVVA----REVDPGGSRTLEV 205 (657)
T ss_pred chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhh--hcCHHHHHH----HhhCCCccchhHH
Confidence 4678999999 22344566778888999999888765211 112333333 2333447789999
Q ss_pred eeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654 124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (206)
Q Consensus 124 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (206)
+||.|+.+........-....+ ....+++.+.......++.
T Consensus 206 itK~DlmdkGt~~~~~L~g~~~---~l~~g~v~vvnR~q~di~~ 246 (657)
T KOG0446|consen 206 ITKFDFMDKGTNAVTRLVGRPI---TLKVGYVGVVNRSQSIIDF 246 (657)
T ss_pred hhhHHhhhcCCcceeeecCCcc---ccccceeeeeccchhhhhh
Confidence 9999998754433332111111 1123566666665555443
No 452
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.43 E-value=0.00013 Score=52.80 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=22.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
..+++++|+|++|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999888754
No 453
>PRK06217 hypothetical protein; Validated
Probab=97.42 E-value=0.00013 Score=50.99 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+|+|+|.+|||||||...|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999865
No 454
>PF05729 NACHT: NACHT domain
Probab=97.41 E-value=0.00029 Score=48.05 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028654 11 VIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~ 32 (206)
++|.|++|+||||++..+...-
T Consensus 3 l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6789999999999999987643
No 455
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.40 E-value=0.00015 Score=48.10 Aligned_cols=21 Identities=33% Similarity=0.793 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028654 11 VIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
|+++|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 578999999999999999875
No 456
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.38 E-value=0.00017 Score=45.39 Aligned_cols=20 Identities=50% Similarity=0.810 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 028654 10 KVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~ 29 (206)
.++++|++|||||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 57899999999999999875
No 457
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.38 E-value=0.00017 Score=49.52 Aligned_cols=21 Identities=48% Similarity=0.713 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.++++|++|+|||||+|-+.+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred EEEEECCCCccHHHHHHHHHh
Confidence 678999999999999998866
No 458
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.36 E-value=0.00017 Score=50.51 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|++|||||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999997653
No 459
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.36 E-value=0.00018 Score=50.39 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
.=|+++|++|||||||++.|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 347899999999999999998754
No 460
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.36 E-value=0.0005 Score=52.39 Aligned_cols=94 Identities=19% Similarity=0.080 Sum_probs=61.5
Q ss_pred eCCCc-cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHH
Q 028654 63 DTAGQ-ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKK 141 (206)
Q Consensus 63 D~~G~-~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~ 141 (206)
+.||+ ..+.......+..+|+++.++|+.++.+... ..+..... +.+.++|+||.|+.+. ....+-
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~-----~k~~i~vlNK~DL~~~---~~~~~W 82 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVK-----EKPKLLVLNKADLAPK---EVTKKW 82 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHc-----cCCcEEEEehhhcCCH---HHHHHH
Confidence 45774 4556667778899999999999998765433 12222222 4567999999999874 223333
Q ss_pred HHHHHHHcCCCcEEEeeccCCCCHHHHHH
Q 028654 142 AKAWCASKGNIPYFETSAKEGFNVEAAFE 170 (206)
Q Consensus 142 ~~~~~~~~~~~~~~~~s~~~~~~i~~l~~ 170 (206)
.+.+.... ....+.+++..+.+...+..
T Consensus 83 ~~~~~~~~-~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 83 KKYFKKEE-GIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HHHHHhcC-CCccEEEEeecccCccchHH
Confidence 33333333 36678888888877776664
No 461
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.36 E-value=0.00022 Score=49.07 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
.-+.++|++|||||||+.++...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHH
Confidence 35789999999999999999865
No 462
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.36 E-value=0.00017 Score=47.09 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028654 11 VIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998765
No 463
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.36 E-value=0.00021 Score=50.91 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...-|+++|++|||||||++.+.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999764
No 464
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.35 E-value=0.00021 Score=47.05 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFS 34 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~ 34 (206)
..++++|++|+||||++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999876543
No 465
>PRK03839 putative kinase; Provisional
Probab=97.35 E-value=0.00017 Score=50.23 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
+|+++|++||||||+...|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998765
No 466
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.34 E-value=0.00072 Score=43.75 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
--|++-|+-|+|||||++.+...-
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc
Confidence 357888999999999999988654
No 467
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.33 E-value=0.00019 Score=49.92 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 468
>PRK08233 hypothetical protein; Provisional
Probab=97.33 E-value=0.00022 Score=49.58 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
..-|+|.|.+|||||||.+.|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 356788999999999999999764
No 469
>PRK14531 adenylate kinase; Provisional
Probab=97.33 E-value=0.00021 Score=49.96 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
..+|+++|+|||||||+...+...
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999988654
No 470
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.33 E-value=0.0002 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028654 11 VIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~ 32 (206)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999987753
No 471
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.32 E-value=0.00084 Score=42.43 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=53.9
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChh
Q 028654 15 GDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK 94 (206)
Q Consensus 15 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~ 94 (206)
+..|+||||+.-.|...-......... ......... ..+.++|+|+.... .....+..+|.++++.+.+. .
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~-----l~d~d~~~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVL-----LVDLDLQFG-DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-P 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEE-----EEECCCCCC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-H
Confidence 567899999876654321111000110 000000000 17789999995432 23456678999999998764 3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeC
Q 028654 95 SFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126 (206)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK 126 (206)
+...+..+...+...... +...+.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~~~~---~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVLDYS---LPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHcCCC---CcCceEEEecC
Confidence 445555555555443211 12357777775
No 472
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.31 E-value=0.0002 Score=50.68 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028654 11 VIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
|+|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998765
No 473
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.31 E-value=0.0002 Score=54.33 Aligned_cols=21 Identities=38% Similarity=0.706 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028654 11 VIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
++++||+|||||||++.+.+-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999874
No 474
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.30 E-value=0.0012 Score=45.55 Aligned_cols=44 Identities=23% Similarity=0.138 Sum_probs=27.3
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCC
Q 028654 82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (206)
Q Consensus 82 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 131 (206)
|++++|+|+.++.+... ..+...+. ... .+.|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~--l~~---~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL--QAG---GNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH--hcc---CCCCEEEEEehhhcCC
Confidence 78999999987533221 12222211 111 1579999999999975
No 475
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.29 E-value=0.00023 Score=49.46 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-|+++|++|||||||++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47899999999999999998753
No 476
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.28 E-value=0.00026 Score=49.58 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
-.++++|++|||||||++.+.+..
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999988753
No 477
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.28 E-value=0.00024 Score=51.88 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028654 11 VIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~ 30 (206)
++++||.|||||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57899999999999999987
No 478
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.27 E-value=0.00043 Score=49.31 Aligned_cols=25 Identities=40% Similarity=0.598 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...-|+|+|++|||||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3456788999999999999999754
No 479
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.26 E-value=0.00029 Score=48.79 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 028654 9 LKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~ 29 (206)
-.++++|+.|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 367899999999999999885
No 480
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.00028 Score=53.89 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=26.9
Q ss_pred eEEEEEEeeCCCccccc----ccccc--ceecCcEEEEEEECCChhhHH
Q 028654 55 RLFTLQIWDTAGQERFQ----SLGVA--FYRGADCCVLVYDVNVMKSFD 97 (206)
Q Consensus 55 ~~~~~~i~D~~G~~~~~----~~~~~--~~~~~d~vi~v~d~~~~~~~~ 97 (206)
..+.+.|+||.|..... ..+.. -.-+.|-+|+|.|++-...-.
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae 230 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE 230 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH
Confidence 35789999999933211 11111 123589999999998654433
No 481
>PRK13949 shikimate kinase; Provisional
Probab=97.26 E-value=0.00028 Score=48.60 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
+|+++|++||||||+...|...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988754
No 482
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0015 Score=49.28 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~ 32 (206)
-.-|.++|..|+|||||++.|..+.
T Consensus 188 f~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 188 FTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred eeEEEeecCCCccHHHHHHHHhccC
Confidence 3457899999999999999988764
No 483
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.26 E-value=0.00028 Score=46.94 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.|+|+|+.|||||||+..|.+.-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999987653
No 484
>PRK10646 ADP-binding protein; Provisional
Probab=97.25 E-value=0.0019 Score=43.40 Aligned_cols=24 Identities=25% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKF 33 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~ 33 (206)
-|++-|.-|+|||||++.+...-.
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999987643
No 485
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.25 E-value=0.00028 Score=51.02 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=21.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+.+|+|+|+|||||||+...|...
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998654
No 486
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.25 E-value=0.00027 Score=48.99 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 67899999999999999988754
No 487
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.25 E-value=0.00026 Score=50.09 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028654 11 VIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~ 32 (206)
|+++|++||||||+++.+....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999887653
No 488
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.00023 Score=50.08 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028654 11 VIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~ 30 (206)
.+++||+|||||||++.|-.
T Consensus 36 TAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 47999999999999988743
No 489
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.24 E-value=0.00028 Score=49.40 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|+++|++||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999874
No 490
>PRK01889 GTPase RsgA; Reviewed
Probab=97.24 E-value=0.00046 Score=53.33 Aligned_cols=24 Identities=42% Similarity=0.729 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
-.++++|.+|+|||||+|.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 368999999999999999998754
No 491
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.22 E-value=0.00026 Score=50.90 Aligned_cols=21 Identities=24% Similarity=0.272 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028654 11 VIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
|++.|++|||||||++.|.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 678999999999999998764
No 492
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.0003 Score=48.93 Aligned_cols=21 Identities=48% Similarity=0.775 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
-++++|++|||||||+|.+.+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 367899999999999998865
No 493
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.0003 Score=50.21 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 368999999999999999877
No 494
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.20 E-value=0.004 Score=43.26 Aligned_cols=85 Identities=24% Similarity=0.266 Sum_probs=55.2
Q ss_pred eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc
Q 028654 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS 134 (206)
Q Consensus 55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~ 134 (206)
..+.+.++|||+.... .....+..+|.+++++..+. .+...+..+...+... +.|+.+|+||.|...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~-------~~~~~vV~N~~~~~~--- 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF-------GIPVGVVINKYDLND--- 157 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc-------CCCEEEEEeCCCCCc---
Confidence 3568899999975322 33455678999999999874 3455555555544432 457889999998643
Q ss_pred ceecHHHHHHHHHHcCCCcEE
Q 028654 135 RVVSEKKAKAWCASKGNIPYF 155 (206)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~ 155 (206)
...++..++.+..+ .+++
T Consensus 158 --~~~~~~~~~~~~~~-~~vl 175 (179)
T cd03110 158 --EIAEEIEDYCEEEG-IPIL 175 (179)
T ss_pred --chHHHHHHHHHHcC-CCeE
Confidence 23445566666655 4443
No 495
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.19 E-value=0.0003 Score=46.53 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=22.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
+...+|+|.|.||+|||||..++...
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHH
Confidence 55689999999999999999998743
No 496
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.19 E-value=0.00036 Score=50.11 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57899999999999999998763
No 497
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.19 E-value=0.00059 Score=52.99 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHh
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~ 29 (206)
.++..|+++|-.||||||.+-.|.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA 121 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLA 121 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHH
Confidence 456789999999999999887764
No 498
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.19 E-value=0.00043 Score=47.86 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+|+++|++|+|||||...+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 37999999999999999998754
No 499
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.19 E-value=0.00037 Score=49.78 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 500
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.19 E-value=0.00033 Score=49.78 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
--|+++|++|||||||++.+.+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999875
Done!