Query 028654
Match_columns 206
No_of_seqs 159 out of 1869
Neff 11.0
Searched_HMMs 29240
Date Tue Mar 26 01:05:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 5.6E-42 1.9E-46 243.8 17.7 194 6-206 11-208 (216)
2 1vg8_A RAS-related protein RAB 100.0 2.7E-38 9.2E-43 224.4 18.0 203 1-206 1-207 (207)
3 2bcg_Y Protein YP2, GTP-bindin 100.0 5.2E-37 1.8E-41 217.7 21.5 175 1-182 1-175 (206)
4 2bov_A RAla, RAS-related prote 100.0 1.7E-35 5.8E-40 209.7 17.8 168 6-180 12-179 (206)
5 3cpj_B GTP-binding protein YPT 100.0 8.1E-35 2.8E-39 208.8 19.6 172 6-184 11-182 (223)
6 1ky3_A GTP-binding protein YPT 100.0 1.1E-34 3.7E-39 201.6 19.0 179 1-180 1-180 (182)
7 3tw8_B RAS-related protein RAB 100.0 3.7E-34 1.3E-38 198.7 21.1 173 1-181 2-174 (181)
8 1wms_A RAB-9, RAB9, RAS-relate 100.0 1E-33 3.5E-38 196.0 22.6 173 4-179 3-175 (177)
9 3tkl_A RAS-related protein RAB 100.0 6.8E-34 2.3E-38 200.0 22.1 172 5-183 13-184 (196)
10 2fu5_C RAS-related protein RAB 100.0 1.2E-34 4.2E-39 201.7 17.8 174 1-181 1-174 (183)
11 2efe_B Small GTP-binding prote 100.0 7.4E-34 2.5E-38 197.3 21.1 171 4-181 8-178 (181)
12 3kkq_A RAS-related protein M-R 100.0 1E-33 3.4E-38 197.1 21.5 170 3-179 13-183 (183)
13 2fn4_A P23, RAS-related protei 100.0 5E-34 1.7E-38 198.1 19.9 176 1-183 2-177 (181)
14 2bme_A RAB4A, RAS-related prot 100.0 3.7E-34 1.3E-38 199.7 19.0 175 1-182 3-177 (186)
15 2ew1_A RAS-related protein RAB 100.0 4.5E-34 1.5E-38 201.7 19.4 169 6-181 24-192 (201)
16 3reg_A RHO-like small GTPase; 100.0 2.1E-33 7E-38 197.3 21.8 171 6-182 21-192 (194)
17 1z08_A RAS-related protein RAB 100.0 9.2E-34 3.1E-38 194.9 19.4 167 5-178 3-169 (170)
18 1x3s_A RAS-related protein RAB 100.0 1.4E-33 4.9E-38 198.1 20.5 173 2-181 9-181 (195)
19 2j0v_A RAC-like GTP-binding pr 100.0 4.3E-34 1.5E-38 203.5 17.9 173 6-184 7-186 (212)
20 2fg5_A RAB-22B, RAS-related pr 100.0 6.4E-34 2.2E-38 199.7 18.3 170 5-181 20-189 (192)
21 2a5j_A RAS-related protein RAB 100.0 1.1E-33 3.6E-38 198.4 19.4 169 5-180 18-186 (191)
22 2hup_A RAS-related protein RAB 100.0 8.9E-34 3E-38 200.3 19.0 170 6-181 27-196 (201)
23 1z0f_A RAB14, member RAS oncog 100.0 1.7E-33 6E-38 195.0 20.1 167 5-178 12-178 (179)
24 2il1_A RAB12; G-protein, GDP, 100.0 6.5E-34 2.2E-38 199.6 17.9 170 4-179 22-191 (192)
25 3t5g_A GTP-binding protein RHE 100.0 2.5E-33 8.6E-38 194.7 20.5 170 6-182 4-173 (181)
26 2gf9_A RAS-related protein RAB 100.0 2.9E-33 9.8E-38 195.8 20.9 167 6-179 20-186 (189)
27 1r2q_A RAS-related protein RAB 100.0 1.6E-33 5.5E-38 193.5 19.1 167 5-178 3-169 (170)
28 1g16_A RAS-related protein SEC 100.0 2.5E-33 8.4E-38 192.7 19.7 166 7-180 2-167 (170)
29 2g6b_A RAS-related protein RAB 100.0 7E-33 2.4E-37 192.2 22.0 169 5-180 7-176 (180)
30 3ihw_A Centg3; RAS, centaurin, 100.0 3.9E-33 1.3E-37 194.4 20.4 167 5-181 17-183 (184)
31 1z2a_A RAS-related protein RAB 100.0 2.5E-33 8.5E-38 192.3 18.8 165 6-178 3-167 (168)
32 4dsu_A GTPase KRAS, isoform 2B 100.0 2.5E-33 8.6E-38 195.9 18.9 168 7-182 3-170 (189)
33 1ek0_A Protein (GTP-binding pr 100.0 2.9E-33 9.9E-38 192.3 18.9 166 7-177 2-168 (170)
34 1z0j_A RAB-22, RAS-related pro 100.0 5.6E-33 1.9E-37 190.9 20.3 165 6-177 4-168 (170)
35 3cbq_A GTP-binding protein REM 100.0 3.2E-33 1.1E-37 196.5 19.2 171 5-181 20-191 (195)
36 3q3j_B RHO-related GTP-binding 100.0 2.8E-33 9.6E-38 199.5 18.5 173 5-183 24-208 (214)
37 1c1y_A RAS-related protein RAP 100.0 4.3E-33 1.5E-37 190.9 18.7 165 7-177 2-166 (167)
38 1zbd_A Rabphilin-3A; G protein 100.0 1.1E-32 3.8E-37 194.9 21.3 167 6-179 6-172 (203)
39 3dz8_A RAS-related protein RAB 100.0 3.4E-34 1.2E-38 200.9 13.3 170 5-181 20-189 (191)
40 3q85_A GTP-binding protein REM 100.0 6.2E-33 2.1E-37 190.6 19.2 166 8-179 2-168 (169)
41 2o52_A RAS-related protein RAB 100.0 2.5E-33 8.5E-38 197.9 17.4 170 6-182 23-192 (200)
42 2y8e_A RAB-protein 6, GH09086P 100.0 5.3E-33 1.8E-37 192.6 18.4 166 6-178 12-177 (179)
43 2oil_A CATX-8, RAS-related pro 100.0 5.7E-33 1.9E-37 194.9 18.6 168 6-180 23-190 (193)
44 2hxs_A RAB-26, RAS-related pro 100.0 3.5E-33 1.2E-37 193.4 17.2 172 5-181 3-176 (178)
45 1gwn_A RHO-related GTP-binding 100.0 5.4E-33 1.9E-37 196.8 18.4 172 1-178 21-204 (205)
46 1z06_A RAS-related protein RAB 100.0 6.5E-33 2.2E-37 194.0 18.6 168 5-178 17-188 (189)
47 2gf0_A GTP-binding protein DI- 100.0 4.5E-33 1.6E-37 196.2 17.2 169 6-181 6-174 (199)
48 3bc1_A RAS-related protein RAB 100.0 1.9E-32 6.4E-37 192.2 19.9 171 5-181 8-188 (195)
49 2iwr_A Centaurin gamma 1; ANK 100.0 2E-32 6.9E-37 189.7 19.7 168 6-181 5-172 (178)
50 2atx_A Small GTP binding prote 100.0 5.7E-32 1.9E-36 190.0 21.9 167 6-178 16-193 (194)
51 1u8z_A RAS-related protein RAL 100.0 2E-32 6.8E-37 187.6 19.1 165 7-178 3-167 (168)
52 3oes_A GTPase rhebl1; small GT 100.0 5.7E-33 2E-37 196.2 16.7 170 6-182 22-191 (201)
53 2nzj_A GTP-binding protein REM 100.0 2.1E-32 7.3E-37 188.9 19.0 169 6-181 2-172 (175)
54 3cph_A RAS-related protein SEC 100.0 3.4E-32 1.1E-36 193.7 20.4 167 6-180 18-184 (213)
55 2p5s_A RAS and EF-hand domain 100.0 9.2E-33 3.1E-37 194.8 17.1 168 6-178 26-197 (199)
56 1m7b_A RND3/RHOE small GTP-bin 100.0 2E-32 6.7E-37 190.8 18.6 168 5-178 4-183 (184)
57 3c5c_A RAS-like protein 12; GD 100.0 1.9E-32 6.4E-37 191.4 18.3 168 5-178 18-186 (187)
58 2q3h_A RAS homolog gene family 100.0 2.3E-32 7.7E-37 193.0 18.8 171 5-181 17-198 (201)
59 1mh1_A RAC1; GTP-binding, GTPa 100.0 3.7E-32 1.3E-36 189.5 19.5 170 6-181 3-183 (186)
60 1kao_A RAP2A; GTP-binding prot 100.0 1.8E-32 6.2E-37 187.7 17.5 165 7-178 2-166 (167)
61 3q72_A GTP-binding protein RAD 100.0 4.6E-32 1.6E-36 185.7 19.4 164 8-179 2-165 (166)
62 3clv_A RAB5 protein, putative; 100.0 6.5E-32 2.2E-36 191.0 20.7 164 6-179 5-205 (208)
63 2a9k_A RAS-related protein RAL 100.0 3.5E-32 1.2E-36 189.7 18.9 169 5-180 15-183 (187)
64 2f7s_A C25KG, RAS-related prot 100.0 3.1E-33 1E-37 199.8 13.4 170 6-181 23-202 (217)
65 2gco_A H9, RHO-related GTP-bin 100.0 1E-31 3.6E-36 189.7 20.6 168 5-178 22-200 (201)
66 2fv8_A H6, RHO-related GTP-bin 100.0 1.4E-31 4.7E-36 189.9 20.4 170 6-181 23-203 (207)
67 3con_A GTPase NRAS; structural 100.0 3.2E-31 1.1E-35 185.5 22.0 170 4-181 17-186 (190)
68 2g3y_A GTP-binding protein GEM 100.0 1E-31 3.6E-36 190.4 19.1 169 6-180 35-205 (211)
69 2ce2_X GTPase HRAS; signaling 100.0 4E-31 1.4E-35 180.7 21.1 164 7-178 2-165 (166)
70 2j1l_A RHO-related GTP-binding 100.0 1.1E-31 3.9E-36 191.2 19.0 169 7-181 33-212 (214)
71 2atv_A RERG, RAS-like estrogen 100.0 8.1E-32 2.8E-36 189.5 17.9 167 6-180 26-193 (196)
72 4djt_A GTP-binding nuclear pro 100.0 7.4E-32 2.5E-36 192.7 17.4 172 4-182 7-179 (218)
73 3l0i_B RAS-related protein RAB 100.0 3.9E-34 1.3E-38 201.8 4.9 168 5-179 30-197 (199)
74 2yc2_C IFT27, small RAB-relate 100.0 2.4E-32 8.2E-37 193.7 13.9 171 6-180 18-194 (208)
75 4gzl_A RAS-related C3 botulinu 100.0 1.6E-31 5.5E-36 189.1 17.3 165 6-176 28-203 (204)
76 3gj0_A GTP-binding nuclear pro 100.0 6.3E-32 2.1E-36 193.5 14.0 169 5-183 12-180 (221)
77 2erx_A GTP-binding protein DI- 100.0 2.9E-31 9.9E-36 182.6 16.7 166 7-178 2-167 (172)
78 3bwd_D RAC-like GTP-binding pr 100.0 4.6E-32 1.6E-36 188.4 12.4 167 6-178 6-181 (182)
79 3t1o_A Gliding protein MGLA; G 100.0 1.2E-31 4.3E-36 188.5 12.9 167 5-181 11-195 (198)
80 4bas_A ADP-ribosylation factor 100.0 2.8E-30 9.4E-35 181.9 19.5 174 4-181 13-192 (199)
81 2cjw_A GTP-binding protein GEM 100.0 6.8E-30 2.3E-34 179.1 19.8 168 6-180 4-174 (192)
82 1zd9_A ADP-ribosylation factor 100.0 3.6E-31 1.2E-35 185.0 11.8 163 6-179 20-186 (188)
83 1zj6_A ADP-ribosylation factor 100.0 8.9E-31 3E-35 182.9 13.3 166 6-183 14-183 (187)
84 1upt_A ARL1, ADP-ribosylation 100.0 7.2E-30 2.5E-34 175.6 17.5 162 6-179 5-170 (171)
85 1ksh_A ARF-like protein 2; sma 100.0 4.2E-30 1.4E-34 179.2 16.2 162 6-179 16-181 (186)
86 1r8s_A ADP-ribosylation factor 100.0 1.9E-30 6.6E-35 177.3 12.4 159 9-179 1-163 (164)
87 1m2o_B GTP-binding protein SAR 100.0 1.5E-29 5.1E-34 177.1 17.1 158 6-175 21-189 (190)
88 1f6b_A SAR1; gtpases, N-termin 100.0 7.7E-30 2.6E-34 179.7 15.6 158 6-175 23-196 (198)
89 2b6h_A ADP-ribosylation factor 100.0 3.7E-30 1.3E-34 180.5 13.3 161 6-178 27-191 (192)
90 2h57_A ADP-ribosylation factor 100.0 2.9E-29 9.9E-34 175.6 17.8 164 6-178 19-187 (190)
91 1fzq_A ADP-ribosylation factor 100.0 4.3E-30 1.5E-34 178.5 12.9 162 6-179 14-179 (181)
92 2f9l_A RAB11B, member RAS onco 100.0 1.4E-28 4.9E-33 173.3 20.6 168 6-180 3-170 (199)
93 2x77_A ADP-ribosylation factor 100.0 9.4E-30 3.2E-34 177.9 13.8 163 6-180 20-186 (189)
94 2h17_A ADP-ribosylation factor 100.0 6.1E-30 2.1E-34 177.7 12.4 159 5-175 18-180 (181)
95 1moz_A ARL1, ADP-ribosylation 100.0 4.1E-30 1.4E-34 178.8 11.0 162 6-179 16-181 (183)
96 2wkq_A NPH1-1, RAS-related C3 100.0 1E-28 3.4E-33 186.9 18.6 168 6-179 153-331 (332)
97 2zej_A Dardarin, leucine-rich 100.0 5.7E-30 1.9E-34 178.4 10.6 166 8-181 2-181 (184)
98 1oix_A RAS-related protein RAB 100.0 7.2E-28 2.5E-32 168.7 19.5 164 6-176 27-190 (191)
99 2lkc_A Translation initiation 100.0 2.8E-28 9.7E-33 168.6 16.7 163 5-182 5-175 (178)
100 3llu_A RAS-related GTP-binding 100.0 3.8E-29 1.3E-33 175.9 12.4 163 4-176 16-195 (196)
101 3th5_A RAS-related C3 botulinu 99.9 2.5E-31 8.5E-36 188.1 0.0 165 6-176 28-203 (204)
102 2fh5_B SR-beta, signal recogni 100.0 2.1E-28 7.1E-33 174.3 14.9 169 4-176 3-214 (214)
103 3o47_A ADP-ribosylation factor 100.0 1.8E-28 6.2E-33 184.8 11.7 161 7-179 164-328 (329)
104 2wji_A Ferrous iron transport 100.0 5.6E-28 1.9E-32 165.4 13.0 154 7-176 2-163 (165)
105 3r7w_A Gtpase1, GTP-binding pr 100.0 9E-28 3.1E-32 179.6 13.4 167 8-178 3-181 (307)
106 3c5h_A Glucocorticoid receptor 100.0 1.7E-28 5.9E-33 179.0 8.6 165 6-177 17-254 (255)
107 2qu8_A Putative nucleolar GTP- 100.0 4.7E-27 1.6E-31 168.9 15.7 166 6-180 27-207 (228)
108 1svi_A GTP-binding protein YSX 100.0 1.1E-27 3.8E-32 168.1 12.1 161 6-177 21-194 (195)
109 3lvq_E ARF-GAP with SH3 domain 100.0 1.8E-27 6.1E-32 189.0 14.3 165 6-182 320-488 (497)
110 3pqc_A Probable GTP-binding pr 99.9 3E-27 1E-31 165.7 13.7 159 6-178 21-194 (195)
111 3iev_A GTP-binding protein ERA 99.9 2.5E-26 8.5E-31 171.8 18.9 167 6-182 8-186 (308)
112 2wjg_A FEOB, ferrous iron tran 99.9 7.3E-27 2.5E-31 163.0 11.7 160 5-180 4-171 (188)
113 2cxx_A Probable GTP-binding pr 99.9 4.1E-27 1.4E-31 164.4 9.6 159 9-181 2-187 (190)
114 2dyk_A GTP-binding protein; GT 99.9 1.5E-26 5.2E-31 157.3 12.0 151 9-176 2-160 (161)
115 2gj8_A MNME, tRNA modification 99.9 1.7E-26 5.7E-31 159.1 12.2 155 7-178 3-166 (172)
116 3a1s_A Iron(II) transport prot 99.9 5.2E-26 1.8E-30 165.9 15.3 156 7-178 4-167 (258)
117 3iby_A Ferrous iron transport 99.9 1.3E-26 4.3E-31 168.9 10.4 151 9-175 2-164 (256)
118 3r7w_B Gtpase2, GTP-binding pr 99.9 2.6E-27 8.8E-32 175.7 6.7 162 10-182 1-178 (331)
119 3dpu_A RAB family protein; roc 99.9 5.1E-27 1.7E-31 187.7 8.9 166 5-181 38-211 (535)
120 3i8s_A Ferrous iron transport 99.9 3.3E-27 1.1E-31 173.8 7.0 157 7-179 2-170 (274)
121 4dhe_A Probable GTP-binding pr 99.9 2.1E-26 7.1E-31 164.9 9.8 166 6-181 27-214 (223)
122 1wf3_A GTP-binding protein; GT 99.9 3.8E-25 1.3E-29 164.6 14.9 163 6-182 5-177 (301)
123 3b1v_A Ferrous iron uptake tra 99.9 1.7E-26 6E-31 169.3 7.6 155 7-178 2-164 (272)
124 3k53_A Ferrous iron transport 99.9 2.2E-25 7.4E-30 164.1 13.4 159 7-180 2-168 (271)
125 1wb1_A Translation elongation 99.9 7.9E-25 2.7E-29 172.4 15.4 161 5-178 16-189 (482)
126 3gee_A MNME, tRNA modification 99.9 2.1E-24 7.1E-29 169.2 15.0 157 7-177 232-397 (476)
127 1s0u_A EIF-2-gamma, translatio 99.9 7.4E-24 2.5E-28 164.2 16.9 165 5-179 5-199 (408)
128 3sjy_A Translation initiation 99.9 8.3E-24 2.8E-28 163.7 16.3 169 5-180 5-194 (403)
129 3qq5_A Small GTP-binding prote 99.9 4.7E-25 1.6E-29 170.3 8.1 159 5-179 31-197 (423)
130 2hjg_A GTP-binding protein ENG 99.9 1.4E-24 4.6E-29 169.7 10.6 162 7-180 174-351 (436)
131 2e87_A Hypothetical protein PH 99.9 4.2E-23 1.4E-27 157.4 18.3 162 6-179 165-337 (357)
132 1nrj_B SR-beta, signal recogni 99.9 1.6E-25 5.5E-30 159.8 4.5 150 5-164 9-170 (218)
133 1kk1_A EIF2gamma; initiation o 99.9 1E-23 3.5E-28 163.5 14.6 165 5-179 7-201 (410)
134 1ega_A Protein (GTP-binding pr 99.9 3.5E-23 1.2E-27 154.2 16.0 163 7-182 7-179 (301)
135 1mky_A Probable GTP-binding pr 99.9 2E-23 6.7E-28 163.2 15.0 154 9-180 2-168 (439)
136 1lnz_A SPO0B-associated GTP-bi 99.9 3.2E-24 1.1E-28 161.7 9.9 164 9-181 159-333 (342)
137 3izy_P Translation initiation 99.9 8.2E-26 2.8E-30 178.7 0.1 166 7-182 3-172 (537)
138 4dcu_A GTP-binding protein ENG 99.9 1.2E-23 4E-28 165.2 12.2 164 6-181 193-372 (456)
139 3cb4_D GTP-binding protein LEP 99.9 7.2E-23 2.5E-27 164.1 15.5 163 7-181 3-185 (599)
140 2hjg_A GTP-binding protein ENG 99.9 5.1E-24 1.7E-28 166.4 8.5 156 8-180 3-167 (436)
141 2ywe_A GTP-binding protein LEP 99.9 1.5E-22 5.2E-27 162.0 16.7 164 6-181 4-187 (600)
142 1xzp_A Probable tRNA modificat 99.9 2.6E-23 9E-28 163.1 11.9 153 8-178 243-405 (482)
143 3j2k_7 ERF3, eukaryotic polype 99.9 1.3E-22 4.5E-27 158.2 14.2 157 5-170 14-217 (439)
144 2qtf_A Protein HFLX, GTP-bindi 99.9 4.9E-22 1.7E-26 151.2 15.9 166 9-182 179-358 (364)
145 2xtp_A GTPase IMAP family memb 99.9 2.8E-22 9.7E-27 146.7 14.1 166 6-180 20-210 (260)
146 3geh_A MNME, tRNA modification 99.9 6.8E-23 2.3E-27 160.1 11.3 155 7-180 223-386 (462)
147 3t5d_A Septin-7; GTP-binding p 99.9 2.6E-23 8.8E-28 153.2 8.1 167 5-180 5-206 (274)
148 3lxx_A GTPase IMAP family memb 99.9 1.3E-21 4.6E-26 141.4 16.4 168 6-180 27-216 (239)
149 4dcu_A GTP-binding protein ENG 99.9 2E-23 6.9E-28 163.9 7.1 161 3-180 18-187 (456)
150 3tr5_A RF-3, peptide chain rel 99.9 2.8E-22 9.7E-27 159.0 12.6 117 6-132 11-149 (528)
151 1d2e_A Elongation factor TU (E 99.9 1.2E-22 4E-27 156.9 10.1 164 7-178 2-195 (397)
152 3p26_A Elongation factor 1 alp 99.9 2.4E-22 8.3E-27 158.7 11.9 153 6-167 31-227 (483)
153 2c78_A Elongation factor TU-A; 99.9 8.1E-23 2.8E-27 158.3 8.7 164 5-178 8-212 (405)
154 1mky_A Probable GTP-binding pr 99.9 9E-22 3.1E-26 153.9 14.1 161 7-179 179-356 (439)
155 3lxw_A GTPase IMAP family memb 99.9 2.3E-22 8E-27 145.8 10.1 170 6-181 19-211 (247)
156 1zo1_I IF2, translation initia 99.9 2.3E-24 7.7E-29 169.2 -1.6 159 7-175 3-164 (501)
157 2ged_A SR-beta, signal recogni 99.9 1.2E-22 4.2E-27 142.1 7.3 118 6-132 46-171 (193)
158 2elf_A Protein translation elo 99.9 3.9E-22 1.3E-26 152.1 9.8 149 10-178 23-180 (370)
159 1g7s_A Translation initiation 99.9 1.1E-21 3.7E-26 157.5 12.1 163 6-179 3-219 (594)
160 1jny_A EF-1-alpha, elongation 99.9 3E-23 1E-27 161.9 3.0 162 6-170 4-205 (435)
161 1zun_B Sulfate adenylate trans 99.9 2.2E-21 7.7E-26 151.4 12.0 153 6-168 22-214 (434)
162 3izq_1 HBS1P, elongation facto 99.9 6.4E-22 2.2E-26 159.6 9.0 157 6-168 165-362 (611)
163 1cip_A Protein (guanine nucleo 99.9 5.6E-21 1.9E-25 144.6 13.4 123 56-181 192-347 (353)
164 3ohm_A Guanine nucleotide-bind 99.9 3E-21 1E-25 144.0 11.4 131 47-182 159-322 (327)
165 1f60_A Elongation factor EEF1A 99.9 3.3E-22 1.1E-26 156.8 6.2 155 5-168 4-202 (458)
166 1pui_A ENGB, probable GTP-bind 99.9 1.9E-21 6.4E-26 137.8 9.3 160 7-179 25-200 (210)
167 2qag_A Septin-2, protein NEDD5 99.8 4.3E-22 1.5E-26 151.7 4.6 166 6-182 35-237 (361)
168 3avx_A Elongation factor TS, e 99.8 3.2E-21 1.1E-25 161.8 9.6 165 5-177 293-485 (1289)
169 3mca_A HBS1, elongation factor 99.8 5.2E-22 1.8E-26 159.7 4.2 163 6-177 175-396 (592)
170 2xtz_A Guanine nucleotide-bind 99.8 2.2E-20 7.4E-25 141.3 12.0 123 55-180 181-347 (354)
171 1r5b_A Eukaryotic peptide chai 99.8 1.1E-21 3.7E-26 154.2 4.8 158 6-169 41-243 (467)
172 2aka_B Dynamin-1; fusion prote 99.8 2.1E-21 7.2E-26 144.8 4.6 160 7-175 25-250 (299)
173 1zcb_A G alpha I/13; GTP-bindi 99.8 1.1E-19 3.8E-24 137.9 13.4 122 57-181 201-356 (362)
174 1dar_A EF-G, elongation factor 99.8 3.3E-19 1.1E-23 145.9 15.4 119 4-132 8-144 (691)
175 1udx_A The GTP-binding protein 99.8 5.5E-19 1.9E-23 136.1 14.8 164 10-182 159-329 (416)
176 3def_A T7I23.11 protein; chlor 99.8 4.2E-19 1.4E-23 129.9 13.3 123 6-132 34-166 (262)
177 4fid_A G protein alpha subunit 99.8 5.2E-20 1.8E-24 137.9 7.6 120 56-178 160-328 (340)
178 2j69_A Bacterial dynamin-like 99.8 9.9E-19 3.4E-23 143.2 14.0 166 6-178 67-325 (695)
179 1wxq_A GTP-binding protein; st 99.8 6.5E-20 2.2E-24 141.0 6.0 85 9-93 1-114 (397)
180 2h5e_A Peptide chain release f 99.8 1.8E-18 6.2E-23 137.4 14.3 117 6-132 11-149 (529)
181 2dy1_A Elongation factor G; tr 99.8 1.3E-18 4.4E-23 142.0 13.5 115 6-130 7-139 (665)
182 1jwy_B Dynamin A GTPase domain 99.8 1.1E-19 3.7E-24 136.5 6.6 115 57-181 131-265 (315)
183 2qnr_A Septin-2, protein NEDD5 99.8 1.3E-19 4.5E-24 134.8 6.5 165 6-181 16-217 (301)
184 2rdo_7 EF-G, elongation factor 99.8 8.1E-18 2.8E-22 137.9 16.9 119 6-132 8-149 (704)
185 2xex_A Elongation factor G; GT 99.8 6.2E-18 2.1E-22 138.5 15.5 117 6-132 8-142 (693)
186 3t34_A Dynamin-related protein 99.8 2.9E-19 9.8E-24 136.5 6.1 157 7-172 33-255 (360)
187 3vqt_A RF-3, peptide chain rel 99.8 6.2E-18 2.1E-22 134.9 13.7 117 7-133 30-168 (548)
188 1h65_A Chloroplast outer envel 99.8 1.3E-17 4.5E-22 122.5 14.3 121 7-132 38-169 (270)
189 2x2e_A Dynamin-1; nitration, h 99.7 1.8E-19 6.2E-24 137.1 0.2 159 7-174 30-254 (353)
190 2qag_C Septin-7; cell cycle, c 99.7 5.2E-18 1.8E-22 130.8 8.2 164 6-179 29-228 (418)
191 3p32_A Probable GTPase RV1496/ 99.7 4.8E-18 1.7E-22 129.3 6.6 107 57-178 172-284 (355)
192 2wsm_A Hydrogenase expression/ 99.7 7.6E-18 2.6E-22 120.2 6.5 157 7-180 29-216 (221)
193 1jal_A YCHF protein; nucleotid 99.7 3.1E-16 1.1E-20 118.5 15.2 150 8-160 2-239 (363)
194 1n0u_A EF-2, elongation factor 99.7 2.5E-17 8.6E-22 137.4 8.9 118 5-130 16-163 (842)
195 1u0l_A Probable GTPase ENGC; p 99.7 1.5E-17 5.2E-22 123.8 6.3 134 23-173 32-168 (301)
196 2www_A Methylmalonic aciduria 99.7 5.5E-18 1.9E-22 128.5 1.1 104 57-178 167-279 (349)
197 3j25_A Tetracycline resistance 99.7 2E-17 6.8E-22 134.4 4.1 166 8-183 2-244 (638)
198 4fn5_A EF-G 1, elongation fact 99.7 2.1E-15 7.2E-20 124.1 15.6 119 6-132 11-152 (709)
199 3zvr_A Dynamin-1; hydrolase, D 99.7 7.9E-17 2.7E-21 131.6 6.5 165 7-181 50-284 (772)
200 1azs_C GS-alpha; complex (lyas 99.7 3.4E-16 1.1E-20 119.8 9.5 128 48-180 210-387 (402)
201 2dby_A GTP-binding protein; GD 99.6 6.4E-16 2.2E-20 117.4 9.8 84 9-92 2-111 (368)
202 2hf9_A Probable hydrogenase ni 99.6 3E-17 1E-21 117.4 2.3 155 7-178 37-224 (226)
203 2qpt_A EH domain-containing pr 99.6 1.8E-16 6.3E-21 126.6 6.4 120 6-132 63-233 (550)
204 2p67_A LAO/AO transport system 99.6 1.6E-16 5.4E-21 120.3 5.5 106 57-177 149-260 (341)
205 4a9a_A Ribosome-interacting GT 99.6 6.2E-15 2.1E-19 112.0 13.2 117 8-130 72-195 (376)
206 1yrb_A ATP(GTP)binding protein 99.6 1E-14 3.5E-19 106.6 10.2 116 57-179 109-258 (262)
207 2qm8_A GTPase/ATPase; G protei 99.5 7.5E-14 2.6E-18 105.3 9.1 104 57-177 148-260 (337)
208 2yv5_A YJEQ protein; hydrolase 99.4 6.8E-13 2.3E-17 98.7 10.2 97 67-173 66-164 (302)
209 2ohf_A Protein OLA1, GTP-bindi 99.4 1.5E-13 5.3E-18 104.8 5.4 88 6-93 20-129 (396)
210 3l82_B F-box only protein 4; T 99.4 1.7E-13 6E-18 94.7 4.6 112 64-180 109-225 (227)
211 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 8.4E-12 2.9E-16 95.5 13.4 86 7-92 19-127 (392)
212 3l2o_B F-box only protein 4; s 99.2 1.4E-12 4.8E-17 94.5 1.5 111 64-179 194-309 (312)
213 3ec1_A YQEH GTPase; atnos1, at 99.2 2.7E-12 9.1E-17 98.0 1.1 141 8-165 162-318 (369)
214 3sop_A Neuronal-specific septi 99.1 9.7E-11 3.3E-15 85.6 7.4 116 8-132 2-155 (270)
215 2qag_B Septin-6, protein NEDD5 99.1 1.4E-10 4.8E-15 89.4 7.7 143 8-160 42-218 (427)
216 3h2y_A GTPase family protein; 99.1 1.3E-11 4.5E-16 94.1 -0.2 135 9-160 161-312 (368)
217 1tq4_A IIGP1, interferon-induc 99.0 3E-09 1E-13 82.0 11.3 163 8-181 69-256 (413)
218 2j37_W Signal recognition part 99.0 1.7E-10 5.7E-15 91.0 4.1 152 7-175 100-310 (504)
219 3h2y_A GTPase family protein; 99.0 7.7E-10 2.6E-14 84.4 7.1 98 66-176 55-158 (368)
220 3ec1_A YQEH GTPase; atnos1, at 98.9 2E-09 6.7E-14 82.2 5.5 101 66-176 57-160 (369)
221 1puj_A YLQF, conserved hypothe 98.8 5.5E-09 1.9E-13 76.8 5.6 101 61-178 3-106 (282)
222 1puj_A YLQF, conserved hypothe 98.7 1.8E-08 6.1E-13 74.1 5.1 56 7-67 119-175 (282)
223 3dm5_A SRP54, signal recogniti 98.7 7.6E-08 2.6E-12 74.6 8.4 91 57-166 183-279 (443)
224 3cnl_A YLQF, putative uncharac 98.6 1.7E-08 6E-13 73.4 2.9 56 9-69 100-156 (262)
225 1f5n_A Interferon-induced guan 98.5 8.6E-08 2.9E-12 77.0 4.6 64 5-68 35-102 (592)
226 3kl4_A SRP54, signal recogniti 98.4 9.1E-08 3.1E-12 74.1 3.0 90 57-165 180-277 (433)
227 3szr_A Interferon-induced GTP- 98.4 5.7E-07 1.9E-11 73.0 6.5 24 9-32 46-69 (608)
228 2v3c_C SRP54, signal recogniti 98.4 1.3E-06 4.3E-11 68.0 8.0 23 8-30 99-121 (432)
229 1j8m_F SRP54, signal recogniti 98.3 1.6E-06 5.6E-11 64.1 7.0 91 57-167 181-280 (297)
230 3cnl_A YLQF, putative uncharac 98.3 3.1E-07 1.1E-11 66.8 2.5 93 64-174 4-97 (262)
231 1t9h_A YLOQ, probable GTPase E 98.3 1.2E-06 4.1E-11 65.0 5.5 89 73-169 79-168 (307)
232 3q5d_A Atlastin-1; G protein, 98.2 1E-05 3.5E-10 63.0 9.4 26 6-31 65-90 (447)
233 3e70_C DPA, signal recognition 98.1 7.9E-06 2.7E-10 61.3 6.9 24 7-30 128-151 (328)
234 2rcn_A Probable GTPase ENGC; Y 98.1 2.5E-05 8.5E-10 59.1 9.4 86 76-171 126-212 (358)
235 1bif_A 6-phosphofructo-2-kinas 97.8 7.7E-07 2.6E-11 70.2 -2.8 101 6-108 37-147 (469)
236 1ye8_A Protein THEP1, hypothet 97.7 2.3E-05 7.8E-10 53.5 3.2 22 10-31 2-23 (178)
237 1knq_A Gluconate kinase; ALFA/ 97.7 2.9E-05 9.9E-10 52.7 3.5 30 1-30 1-30 (175)
238 1kgd_A CASK, peripheral plasma 97.7 2.6E-05 8.8E-10 53.3 3.0 22 10-31 7-28 (180)
239 2xxa_A Signal recognition part 97.7 0.00031 1.1E-08 54.7 9.3 23 7-29 99-121 (433)
240 1lvg_A Guanylate kinase, GMP k 97.6 3.2E-05 1.1E-09 53.7 3.0 22 10-31 6-27 (198)
241 3tr0_A Guanylate kinase, GMP k 97.5 5E-05 1.7E-09 52.8 3.0 22 10-31 9-30 (205)
242 3a00_A Guanylate kinase, GMP k 97.5 5E-05 1.7E-09 52.1 2.9 21 11-31 4-24 (186)
243 1zp6_A Hypothetical protein AT 97.5 5.9E-05 2E-09 51.8 3.2 23 9-31 10-32 (191)
244 1znw_A Guanylate kinase, GMP k 97.5 5.5E-05 1.9E-09 52.9 2.9 23 10-32 22-44 (207)
245 4gp7_A Metallophosphoesterase; 97.5 5.4E-05 1.9E-09 51.2 2.7 20 10-29 11-30 (171)
246 1s96_A Guanylate kinase, GMP k 97.5 6.2E-05 2.1E-09 53.1 3.0 23 10-32 18-40 (219)
247 1z6g_A Guanylate kinase; struc 97.5 6.2E-05 2.1E-09 53.1 2.9 23 10-32 25-47 (218)
248 3ney_A 55 kDa erythrocyte memb 97.5 6.8E-05 2.3E-09 51.9 3.0 23 9-31 20-42 (197)
249 3c8u_A Fructokinase; YP_612366 97.4 6.8E-05 2.3E-09 52.4 2.9 25 7-31 21-45 (208)
250 1ly1_A Polynucleotide kinase; 97.4 8.9E-05 3E-09 50.3 3.4 22 9-30 3-24 (181)
251 4ido_A Atlastin-1; GTPase, GTP 97.4 0.002 6.8E-08 50.2 10.8 24 6-29 65-88 (457)
252 3asz_A Uridine kinase; cytidin 97.4 9.1E-05 3.1E-09 51.8 3.2 24 8-31 6-29 (211)
253 3tau_A Guanylate kinase, GMP k 97.4 9E-05 3.1E-09 51.8 3.1 24 9-32 9-32 (208)
254 3tif_A Uncharacterized ABC tra 97.4 8.1E-05 2.8E-09 53.1 2.9 23 10-32 33-55 (235)
255 2wwf_A Thymidilate kinase, put 97.4 0.00011 3.9E-09 51.3 3.5 25 6-30 8-32 (212)
256 1ex7_A Guanylate kinase; subst 97.4 9.7E-05 3.3E-09 50.7 3.0 21 11-31 4-24 (186)
257 1uf9_A TT1252 protein; P-loop, 97.4 0.00013 4.5E-09 50.5 3.6 31 1-31 1-31 (203)
258 1kag_A SKI, shikimate kinase I 97.4 0.00011 3.7E-09 49.6 3.0 23 9-31 5-27 (173)
259 1htw_A HI0065; nucleotide-bind 97.4 0.00011 3.8E-09 49.1 2.9 23 10-32 35-57 (158)
260 2pcj_A ABC transporter, lipopr 97.4 0.0001 3.5E-09 52.2 2.9 23 10-32 32-54 (224)
261 2qor_A Guanylate kinase; phosp 97.3 0.00012 4E-09 51.0 3.0 23 9-31 13-35 (204)
262 2j41_A Guanylate kinase; GMP, 97.3 0.00012 3.9E-09 51.0 3.0 24 9-32 7-30 (207)
263 2onk_A Molybdate/tungstate ABC 97.3 0.00013 4.4E-09 52.3 3.1 23 10-32 26-48 (240)
264 1qhx_A CPT, protein (chloramph 97.3 0.00015 5E-09 49.2 3.3 23 9-31 4-26 (178)
265 2bbw_A Adenylate kinase 4, AK4 97.3 0.00015 5.1E-09 52.0 3.4 22 8-29 27-48 (246)
266 2bdt_A BH3686; alpha-beta prot 97.3 0.00013 4.4E-09 50.1 2.9 21 10-30 4-24 (189)
267 4eun_A Thermoresistant glucoki 97.3 0.00014 4.6E-09 50.5 3.0 23 9-31 30-52 (200)
268 1sgw_A Putative ABC transporte 97.3 0.00013 4.6E-09 51.2 3.0 23 10-32 37-59 (214)
269 3gfo_A Cobalt import ATP-bindi 97.3 0.00013 4.5E-09 53.3 3.0 23 10-32 36-58 (275)
270 3lw7_A Adenylate kinase relate 97.3 0.00015 5E-09 48.9 3.0 19 10-28 3-21 (179)
271 1b0u_A Histidine permease; ABC 97.3 0.00013 4.6E-09 52.9 3.0 23 10-32 34-56 (262)
272 2rcn_A Probable GTPase ENGC; Y 97.3 0.00016 5.4E-09 54.8 3.4 23 10-32 217-239 (358)
273 2eyu_A Twitching motility prot 97.3 0.00014 4.7E-09 52.8 3.0 22 10-31 27-48 (261)
274 2cbz_A Multidrug resistance-as 97.3 0.00014 4.7E-09 52.0 2.9 22 10-31 33-54 (237)
275 4g1u_C Hemin import ATP-bindin 97.3 0.00014 4.9E-09 52.8 3.0 23 10-32 39-61 (266)
276 3kb2_A SPBC2 prophage-derived 97.3 0.00015 5E-09 48.9 2.9 22 10-31 3-24 (173)
277 1tev_A UMP-CMP kinase; ploop, 97.3 0.00018 6.2E-09 49.4 3.4 24 7-30 2-25 (196)
278 2i3b_A HCR-ntpase, human cance 97.3 0.00015 5.2E-09 49.9 2.9 22 10-31 3-24 (189)
279 1g6h_A High-affinity branched- 97.3 0.00015 5E-09 52.5 2.9 23 10-32 35-57 (257)
280 1mv5_A LMRA, multidrug resista 97.2 0.00018 6E-09 51.7 3.2 23 10-32 30-52 (243)
281 3t61_A Gluconokinase; PSI-biol 97.2 0.00016 5.6E-09 50.2 2.9 24 8-31 18-41 (202)
282 2pze_A Cystic fibrosis transme 97.2 0.00017 5.6E-09 51.3 3.0 23 10-32 36-58 (229)
283 2olj_A Amino acid ABC transpor 97.2 0.00016 5.6E-09 52.4 3.0 23 10-32 52-74 (263)
284 2ff7_A Alpha-hemolysin translo 97.2 0.00018 6E-09 51.8 3.1 23 10-32 37-59 (247)
285 1kht_A Adenylate kinase; phosp 97.2 0.0002 6.8E-09 49.0 3.3 22 9-30 4-25 (192)
286 1ji0_A ABC transporter; ATP bi 97.2 0.00017 5.8E-09 51.6 2.9 23 10-32 34-56 (240)
287 1vpl_A ABC transporter, ATP-bi 97.2 0.00017 6E-09 52.1 3.0 23 10-32 43-65 (256)
288 2d2e_A SUFC protein; ABC-ATPas 97.2 0.00018 6.3E-09 51.8 3.1 22 10-31 31-52 (250)
289 2v9p_A Replication protein E1; 97.2 0.00018 6.3E-09 53.2 3.1 22 10-31 128-149 (305)
290 1jjv_A Dephospho-COA kinase; P 97.2 0.00024 8.2E-09 49.4 3.6 22 9-30 3-24 (206)
291 2qi9_C Vitamin B12 import ATP- 97.2 0.00018 6.2E-09 51.8 3.0 23 10-32 28-50 (249)
292 1cke_A CK, MSSA, protein (cyti 97.2 0.0002 7E-09 50.5 3.2 22 9-30 6-27 (227)
293 3b85_A Phosphate starvation-in 97.2 0.00013 4.5E-09 51.0 2.2 22 10-31 24-45 (208)
294 2zu0_C Probable ATP-dependent 97.2 0.0002 6.9E-09 52.1 3.1 22 10-31 48-69 (267)
295 3vaa_A Shikimate kinase, SK; s 97.2 0.00023 7.9E-09 49.3 3.3 22 9-30 26-47 (199)
296 2ghi_A Transport protein; mult 97.2 0.00021 7.2E-09 51.8 3.1 22 10-31 48-69 (260)
297 2ixe_A Antigen peptide transpo 97.2 0.00019 6.6E-09 52.3 2.9 23 10-32 47-69 (271)
298 3uie_A Adenylyl-sulfate kinase 97.2 0.00021 7.1E-09 49.6 2.9 24 8-31 25-48 (200)
299 3cm0_A Adenylate kinase; ATP-b 97.2 0.0003 1E-08 48.0 3.7 23 8-30 4-26 (186)
300 3fb4_A Adenylate kinase; psych 97.2 0.00023 7.8E-09 49.9 3.2 21 10-30 2-22 (216)
301 3aez_A Pantothenate kinase; tr 97.2 0.00021 7.1E-09 53.2 3.0 25 7-31 89-113 (312)
302 2ihy_A ABC transporter, ATP-bi 97.2 0.00023 7.8E-09 52.1 3.2 23 10-32 49-71 (279)
303 2nq2_C Hypothetical ABC transp 97.2 0.00021 7.2E-09 51.5 2.9 23 10-32 33-55 (253)
304 3ec2_A DNA replication protein 97.2 0.00019 6.4E-09 48.9 2.5 23 9-31 39-61 (180)
305 2if2_A Dephospho-COA kinase; a 97.2 0.00023 8E-09 49.4 3.1 22 9-30 2-23 (204)
306 1np6_A Molybdopterin-guanine d 97.2 0.00028 9.5E-09 47.9 3.3 23 9-31 7-29 (174)
307 3dl0_A Adenylate kinase; phosp 97.2 0.00025 8.5E-09 49.7 3.2 21 10-30 2-22 (216)
308 2yz2_A Putative ABC transporte 97.2 0.00022 7.6E-09 51.8 2.9 23 10-32 35-57 (266)
309 2rhm_A Putative kinase; P-loop 97.2 0.00028 9.5E-09 48.4 3.3 23 8-30 5-27 (193)
310 2plr_A DTMP kinase, probable t 97.2 0.0003 1E-08 49.0 3.5 24 8-31 4-27 (213)
311 1qf9_A UMP/CMP kinase, protein 97.1 0.00032 1.1E-08 48.0 3.6 23 8-30 6-28 (194)
312 3trf_A Shikimate kinase, SK; a 97.1 0.00027 9.3E-09 48.2 3.2 23 8-30 5-27 (185)
313 3cwq_A Para family chromosome 97.1 0.0046 1.6E-07 43.1 9.5 66 57-131 68-134 (209)
314 3lnc_A Guanylate kinase, GMP k 97.1 0.00015 5.2E-09 51.5 1.8 22 10-31 29-51 (231)
315 1y63_A LMAJ004144AAA protein; 97.1 0.00031 1.1E-08 48.0 3.3 24 8-31 10-33 (184)
316 1u0l_A Probable GTPase ENGC; p 97.1 0.00023 7.8E-09 52.8 2.8 23 10-32 171-193 (301)
317 2jaq_A Deoxyguanosine kinase; 97.1 0.0003 1E-08 48.6 3.3 22 10-31 2-23 (205)
318 3tlx_A Adenylate kinase 2; str 97.1 0.00033 1.1E-08 50.2 3.5 24 7-30 28-51 (243)
319 1nks_A Adenylate kinase; therm 97.1 0.00027 9.2E-09 48.4 2.9 21 10-30 3-23 (194)
320 2cdn_A Adenylate kinase; phosp 97.1 0.00033 1.1E-08 48.5 3.4 24 7-30 19-42 (201)
321 2pjz_A Hypothetical protein ST 97.1 0.0003 1E-08 51.0 3.2 23 10-32 32-54 (263)
322 2c95_A Adenylate kinase 1; tra 97.1 0.00017 5.8E-09 49.6 1.8 23 8-30 9-31 (196)
323 2ehv_A Hypothetical protein PH 97.1 0.00031 1.1E-08 50.2 3.1 20 10-29 32-51 (251)
324 3jvv_A Twitching mobility prot 97.1 0.00029 9.8E-09 53.4 3.0 22 10-31 125-146 (356)
325 4a74_A DNA repair and recombin 97.1 0.00028 9.6E-09 49.8 2.8 22 10-31 27-48 (231)
326 1t9h_A YLOQ, probable GTPase E 97.1 8.5E-05 2.9E-09 55.1 0.1 23 10-32 175-197 (307)
327 2yv5_A YJEQ protein; hydrolase 97.1 0.00031 1E-08 52.1 3.1 20 10-29 167-186 (302)
328 1zd8_A GTP:AMP phosphotransfer 97.1 0.00034 1.2E-08 49.5 3.2 23 8-30 7-29 (227)
329 2qt1_A Nicotinamide riboside k 97.1 0.00039 1.3E-08 48.4 3.5 25 7-31 20-44 (207)
330 2f1r_A Molybdopterin-guanine d 97.1 0.00013 4.6E-09 49.3 1.0 22 10-31 4-25 (171)
331 3tqc_A Pantothenate kinase; bi 97.1 0.00039 1.3E-08 51.8 3.5 24 7-30 91-114 (321)
332 3fvq_A Fe(3+) IONS import ATP- 97.1 0.00031 1.1E-08 53.2 3.0 23 10-32 32-54 (359)
333 3sr0_A Adenylate kinase; phosp 97.0 0.00038 1.3E-08 48.6 3.2 22 10-31 2-23 (206)
334 1aky_A Adenylate kinase; ATP:A 97.0 0.00039 1.3E-08 48.9 3.2 23 8-30 4-26 (220)
335 2jeo_A Uridine-cytidine kinase 97.0 0.00042 1.4E-08 49.7 3.4 23 8-30 25-47 (245)
336 1gvn_B Zeta; postsegregational 97.0 0.00039 1.3E-08 51.1 3.3 24 7-30 32-55 (287)
337 3nh6_A ATP-binding cassette SU 97.0 0.00021 7.1E-09 53.0 1.8 22 10-31 82-103 (306)
338 1e4v_A Adenylate kinase; trans 97.0 0.00038 1.3E-08 48.8 3.0 21 10-30 2-22 (214)
339 1via_A Shikimate kinase; struc 97.0 0.00038 1.3E-08 47.1 2.9 21 10-30 6-26 (175)
340 2v54_A DTMP kinase, thymidylat 97.0 0.00047 1.6E-08 47.8 3.5 24 8-31 4-27 (204)
341 1zak_A Adenylate kinase; ATP:A 97.0 0.00034 1.2E-08 49.3 2.7 23 8-30 5-27 (222)
342 2yvu_A Probable adenylyl-sulfa 97.0 0.00054 1.8E-08 46.8 3.7 25 7-31 12-36 (186)
343 1z47_A CYSA, putative ABC-tran 97.0 0.00038 1.3E-08 52.7 3.1 23 10-32 43-65 (355)
344 1lw7_A Transcriptional regulat 97.0 0.00029 1E-08 53.6 2.5 24 8-31 170-193 (365)
345 2bbs_A Cystic fibrosis transme 97.0 0.00034 1.2E-08 51.5 2.8 23 10-32 66-88 (290)
346 3be4_A Adenylate kinase; malar 97.0 0.00043 1.5E-08 48.6 3.2 23 8-30 5-27 (217)
347 3tui_C Methionine import ATP-b 97.0 0.00039 1.3E-08 52.7 3.1 23 10-32 56-78 (366)
348 1odf_A YGR205W, hypothetical 3 97.0 0.00048 1.7E-08 50.7 3.6 25 6-30 29-53 (290)
349 2iyv_A Shikimate kinase, SK; t 97.0 0.00035 1.2E-08 47.6 2.7 22 9-30 3-24 (184)
350 2kjq_A DNAA-related protein; s 97.0 0.00025 8.7E-09 46.8 1.9 23 10-32 38-60 (149)
351 2x8a_A Nuclear valosin-contain 97.0 0.00039 1.3E-08 50.8 3.0 22 10-31 46-67 (274)
352 2yyz_A Sugar ABC transporter, 97.0 0.0004 1.4E-08 52.6 3.1 23 10-32 31-53 (359)
353 3rlf_A Maltose/maltodextrin im 97.0 0.00041 1.4E-08 52.9 3.1 23 10-32 31-53 (381)
354 2pt7_A CAG-ALFA; ATPase, prote 97.0 0.00038 1.3E-08 52.3 2.9 23 10-32 173-195 (330)
355 2it1_A 362AA long hypothetical 97.0 0.00042 1.4E-08 52.6 3.1 23 10-32 31-53 (362)
356 2gza_A Type IV secretion syste 97.0 0.00038 1.3E-08 52.9 3.0 22 10-31 177-198 (361)
357 3iij_A Coilin-interacting nucl 97.0 0.00047 1.6E-08 46.9 3.0 23 8-30 11-33 (180)
358 1rj9_A FTSY, signal recognitio 97.0 0.00044 1.5E-08 51.3 2.9 23 8-30 102-124 (304)
359 1v43_A Sugar-binding transport 97.0 0.00046 1.6E-08 52.5 3.1 23 10-32 39-61 (372)
360 1g29_1 MALK, maltose transport 97.0 0.00045 1.6E-08 52.6 3.1 23 10-32 31-53 (372)
361 3umf_A Adenylate kinase; rossm 96.9 0.00057 1.9E-08 48.1 3.4 21 11-31 32-52 (217)
362 2ze6_A Isopentenyl transferase 96.9 0.00046 1.6E-08 49.8 3.0 21 10-30 3-23 (253)
363 2bwj_A Adenylate kinase 5; pho 96.9 0.00045 1.5E-08 47.6 2.8 24 8-31 12-35 (199)
364 2ewv_A Twitching motility prot 96.9 0.00043 1.5E-08 52.8 2.9 22 10-31 138-159 (372)
365 1xjc_A MOBB protein homolog; s 96.9 0.0006 2.1E-08 45.9 3.2 23 9-31 5-27 (169)
366 1sq5_A Pantothenate kinase; P- 96.9 0.00045 1.5E-08 51.3 2.9 24 8-31 80-103 (308)
367 1rz3_A Hypothetical protein rb 96.9 0.00058 2E-08 47.4 3.3 23 8-30 22-44 (201)
368 1p9r_A General secretion pathw 96.9 0.00048 1.6E-08 53.3 3.0 22 10-31 169-190 (418)
369 2pt5_A Shikimate kinase, SK; a 96.9 0.00062 2.1E-08 45.6 3.3 21 10-30 2-22 (168)
370 1ixz_A ATP-dependent metallopr 96.9 0.00051 1.8E-08 49.4 3.0 22 10-31 51-72 (254)
371 1ak2_A Adenylate kinase isoenz 96.9 0.00061 2.1E-08 48.4 3.3 24 8-31 16-39 (233)
372 1nn5_A Similar to deoxythymidy 96.9 0.00058 2E-08 47.7 3.1 23 8-30 9-31 (215)
373 4e22_A Cytidylate kinase; P-lo 96.9 0.00064 2.2E-08 49.0 3.4 21 9-29 28-48 (252)
374 3b9q_A Chloroplast SRP recepto 96.9 0.00054 1.9E-08 50.7 3.0 22 9-30 101-122 (302)
375 2xb4_A Adenylate kinase; ATP-b 96.9 0.00063 2.2E-08 48.0 3.3 21 10-30 2-22 (223)
376 2p5t_B PEZT; postsegregational 96.9 0.00044 1.5E-08 49.8 2.4 25 7-31 31-55 (253)
377 1ukz_A Uridylate kinase; trans 96.9 0.00079 2.7E-08 46.6 3.5 23 8-30 15-37 (203)
378 2oap_1 GSPE-2, type II secreti 96.9 0.00055 1.9E-08 54.4 3.0 23 10-32 262-284 (511)
379 1e6c_A Shikimate kinase; phosp 96.9 0.00064 2.2E-08 45.7 2.9 21 10-30 4-24 (173)
380 2z0h_A DTMP kinase, thymidylat 96.8 0.00063 2.2E-08 46.8 2.9 22 10-31 2-23 (197)
381 3gd7_A Fusion complex of cysti 96.8 0.0006 2.1E-08 52.3 3.0 22 10-31 49-70 (390)
382 3r20_A Cytidylate kinase; stru 96.8 0.00074 2.5E-08 48.0 3.2 24 7-30 8-31 (233)
383 1vht_A Dephospho-COA kinase; s 96.8 0.00085 2.9E-08 47.1 3.6 23 8-30 4-26 (218)
384 3d31_A Sulfate/molybdate ABC t 96.8 0.00038 1.3E-08 52.5 1.8 23 10-32 28-50 (348)
385 1jbk_A CLPB protein; beta barr 96.8 0.00079 2.7E-08 45.8 3.3 23 9-31 44-66 (195)
386 2pbr_A DTMP kinase, thymidylat 96.8 0.00078 2.7E-08 46.1 3.2 21 10-30 2-22 (195)
387 2vp4_A Deoxynucleoside kinase; 96.8 0.00052 1.8E-08 48.7 2.3 24 8-31 20-43 (230)
388 1uj2_A Uridine-cytidine kinase 96.8 0.00082 2.8E-08 48.4 3.4 24 7-30 21-44 (252)
389 2vli_A Antibiotic resistance p 96.8 0.00048 1.6E-08 46.8 2.0 24 8-31 5-28 (183)
390 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00093 3.2E-08 48.3 3.5 22 9-30 5-26 (260)
391 1gtv_A TMK, thymidylate kinase 96.8 0.00025 8.4E-09 49.6 0.4 22 10-31 2-23 (214)
392 1iy2_A ATP-dependent metallopr 96.8 0.00078 2.7E-08 49.2 3.0 22 10-31 75-96 (278)
393 1in4_A RUVB, holliday junction 96.8 0.00075 2.6E-08 50.7 2.9 23 9-31 52-74 (334)
394 2pez_A Bifunctional 3'-phospho 96.8 0.0011 3.6E-08 45.0 3.4 24 8-31 5-28 (179)
395 1ltq_A Polynucleotide kinase; 96.7 0.001 3.4E-08 49.1 3.4 22 9-30 3-24 (301)
396 1oxx_K GLCV, glucose, ABC tran 96.7 0.00038 1.3E-08 52.7 1.1 23 10-32 33-55 (353)
397 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.00088 3E-08 47.2 2.9 22 10-31 25-46 (235)
398 1zuh_A Shikimate kinase; alpha 96.7 0.0011 3.7E-08 44.5 3.2 22 9-30 8-29 (168)
399 2og2_A Putative signal recogni 96.7 0.0009 3.1E-08 50.7 3.0 23 8-30 157-179 (359)
400 3kta_A Chromosome segregation 96.7 0.00097 3.3E-08 45.3 3.0 20 11-30 29-48 (182)
401 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.0008 2.7E-08 52.8 2.7 22 10-31 140-161 (460)
402 3nwj_A ATSK2; P loop, shikimat 96.7 0.00097 3.3E-08 48.0 2.9 22 9-30 49-70 (250)
403 1lv7_A FTSH; alpha/beta domain 96.7 0.0012 4.1E-08 47.5 3.4 24 8-31 45-68 (257)
404 2yhs_A FTSY, cell division pro 96.6 0.001 3.5E-08 52.4 3.0 22 9-30 294-315 (503)
405 3d3q_A TRNA delta(2)-isopenten 96.6 0.0013 4.6E-08 49.3 3.4 23 9-31 8-30 (340)
406 2p65_A Hypothetical protein PF 96.6 0.00093 3.2E-08 45.2 2.4 24 8-31 43-66 (187)
407 1cr0_A DNA primase/helicase; R 96.6 0.0011 3.6E-08 48.9 2.8 22 10-31 37-58 (296)
408 1nij_A Hypothetical protein YJ 96.6 0.00085 2.9E-08 50.1 2.2 23 10-32 6-28 (318)
409 2obl_A ESCN; ATPase, hydrolase 96.6 0.0012 4.1E-08 49.8 3.1 23 10-32 73-95 (347)
410 2f6r_A COA synthase, bifunctio 96.6 0.0014 4.7E-08 48.1 3.3 23 8-30 75-97 (281)
411 1m7g_A Adenylylsulfate kinase; 96.6 0.0016 5.3E-08 45.5 3.4 24 8-31 25-48 (211)
412 2w58_A DNAI, primosome compone 96.6 0.0014 4.8E-08 45.3 3.2 23 9-31 55-77 (202)
413 3bos_A Putative DNA replicatio 96.6 0.0014 4.7E-08 46.4 3.2 24 8-31 52-75 (242)
414 4eaq_A DTMP kinase, thymidylat 96.6 0.0017 5.9E-08 46.0 3.6 24 8-31 26-49 (229)
415 2grj_A Dephospho-COA kinase; T 96.6 0.0016 5.6E-08 44.8 3.3 24 8-31 12-35 (192)
416 2cvh_A DNA repair and recombin 96.6 0.0014 4.6E-08 45.9 2.9 21 10-30 22-42 (220)
417 1tue_A Replication protein E1; 96.6 0.0011 3.8E-08 46.0 2.4 21 10-30 60-80 (212)
418 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.0015 5E-08 43.1 2.9 19 11-29 26-44 (149)
419 3crm_A TRNA delta(2)-isopenten 96.5 0.0018 6E-08 48.3 3.5 23 9-31 6-28 (323)
420 3pfi_A Holliday junction ATP-d 96.5 0.0066 2.3E-07 45.5 6.6 24 8-31 55-78 (338)
421 1n0w_A DNA repair protein RAD5 96.5 0.0015 5.2E-08 46.4 3.0 22 10-31 26-47 (243)
422 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0016 5.5E-08 52.2 3.4 23 10-32 49-71 (538)
423 3euj_A Chromosome partition pr 96.5 0.0014 5E-08 51.5 3.0 21 10-30 31-51 (483)
424 1svm_A Large T antigen; AAA+ f 96.5 0.0015 5.2E-08 49.8 2.9 22 9-30 170-191 (377)
425 2dpy_A FLII, flagellum-specifi 96.5 0.0016 5.6E-08 50.7 3.1 23 10-32 159-181 (438)
426 3t15_A Ribulose bisphosphate c 96.4 0.0018 6.3E-08 47.7 3.2 24 8-31 36-59 (293)
427 3b60_A Lipid A export ATP-bind 96.4 0.0016 5.6E-08 52.7 3.1 22 10-31 371-392 (582)
428 2qmh_A HPR kinase/phosphorylas 96.4 0.002 6.9E-08 44.4 3.0 24 9-32 35-58 (205)
429 3ozx_A RNAse L inhibitor; ATP 96.4 0.0017 5.7E-08 52.0 3.0 23 10-32 27-49 (538)
430 3b5x_A Lipid A export ATP-bind 96.4 0.0019 6.5E-08 52.3 3.3 23 10-32 371-393 (582)
431 3n70_A Transport activator; si 96.4 0.0022 7.7E-08 41.9 3.0 26 7-32 23-48 (145)
432 3j16_B RLI1P; ribosome recycli 96.4 0.0019 6.4E-08 52.5 3.1 23 10-32 105-127 (608)
433 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.0024 8E-08 46.0 3.3 24 8-31 39-62 (262)
434 3b9p_A CG5977-PA, isoform A; A 96.4 0.0022 7.4E-08 47.2 3.2 24 8-31 54-77 (297)
435 3ake_A Cytidylate kinase; CMP 96.4 0.0023 7.8E-08 44.3 3.1 21 10-30 4-24 (208)
436 4fcw_A Chaperone protein CLPB; 96.3 0.0029 1E-07 46.7 3.8 23 9-31 48-70 (311)
437 3exa_A TRNA delta(2)-isopenten 96.3 0.0029 9.9E-08 46.9 3.6 23 9-31 4-26 (322)
438 3h4m_A Proteasome-activating n 96.3 0.0023 7.9E-08 46.7 3.1 25 7-31 50-74 (285)
439 1q3t_A Cytidylate kinase; nucl 96.3 0.0026 9E-08 45.2 3.3 24 7-30 15-38 (236)
440 1njg_A DNA polymerase III subu 96.3 0.0023 8E-08 45.1 3.0 21 10-30 47-67 (250)
441 1nlf_A Regulatory protein REPA 96.3 0.0022 7.5E-08 46.8 2.8 21 10-30 32-52 (279)
442 2chg_A Replication factor C sm 96.3 0.0024 8.2E-08 44.4 2.9 22 10-31 40-61 (226)
443 3cf0_A Transitional endoplasmi 96.3 0.0025 8.6E-08 47.1 3.1 24 8-31 49-72 (301)
444 3gmt_A Adenylate kinase; ssgci 96.3 0.0029 9.9E-08 44.8 3.3 23 8-30 8-30 (230)
445 3qf7_A RAD50; ABC-ATPase, ATPa 96.3 0.0025 8.5E-08 48.5 3.1 19 11-29 26-44 (365)
446 2h92_A Cytidylate kinase; ross 96.3 0.0024 8.2E-08 44.7 2.9 23 8-30 3-25 (219)
447 3bk7_A ABC transporter ATP-bin 96.3 0.0024 8.3E-08 51.9 3.2 23 10-32 119-141 (607)
448 1d2n_A N-ethylmaleimide-sensit 96.3 0.0033 1.1E-07 45.7 3.6 26 6-31 62-87 (272)
449 3ozx_A RNAse L inhibitor; ATP 96.3 0.0023 7.9E-08 51.2 3.0 23 10-32 296-318 (538)
450 3zvl_A Bifunctional polynucleo 96.3 0.0024 8.3E-08 49.5 3.0 24 8-31 258-281 (416)
451 2yl4_A ATP-binding cassette SU 96.2 0.0017 5.9E-08 52.7 2.2 22 10-31 372-393 (595)
452 1a7j_A Phosphoribulokinase; tr 96.2 0.0013 4.4E-08 48.4 1.3 22 9-30 6-27 (290)
453 4b4t_M 26S protease regulatory 96.2 0.0029 1E-07 49.1 3.3 25 7-31 214-238 (434)
454 3qf4_B Uncharacterized ABC tra 96.2 0.0019 6.4E-08 52.5 2.4 23 10-32 383-405 (598)
455 2px0_A Flagellar biosynthesis 96.2 0.0025 8.6E-08 47.0 2.8 22 8-29 105-126 (296)
456 4b4t_K 26S protease regulatory 96.2 0.0031 1.1E-07 48.9 3.4 25 7-31 205-229 (428)
457 3syl_A Protein CBBX; photosynt 96.2 0.0032 1.1E-07 46.5 3.4 23 8-30 67-89 (309)
458 1yqt_A RNAse L inhibitor; ATP- 96.2 0.003 1E-07 50.6 3.4 23 10-32 314-336 (538)
459 1l8q_A Chromosomal replication 96.2 0.0026 9E-08 47.4 2.9 23 9-31 38-60 (324)
460 1c9k_A COBU, adenosylcobinamid 96.2 0.0034 1.2E-07 42.7 3.1 21 11-31 2-22 (180)
461 3foz_A TRNA delta(2)-isopenten 96.2 0.0039 1.3E-07 46.1 3.6 24 8-31 10-33 (316)
462 4a82_A Cystic fibrosis transme 96.2 0.0016 5.6E-08 52.6 1.8 22 10-31 369-390 (578)
463 3a8t_A Adenylate isopentenyltr 96.2 0.0041 1.4E-07 46.6 3.7 24 9-32 41-64 (339)
464 4b4t_L 26S protease subunit RP 96.2 0.0034 1.2E-07 48.8 3.3 25 7-31 214-238 (437)
465 1vma_A Cell division protein F 96.2 0.0031 1.1E-07 46.8 3.0 23 8-30 104-126 (306)
466 3bk7_A ABC transporter ATP-bin 96.2 0.0032 1.1E-07 51.1 3.4 23 10-32 384-406 (607)
467 1p5z_B DCK, deoxycytidine kina 96.1 0.0023 7.8E-08 46.3 2.2 25 7-31 23-47 (263)
468 3qf4_A ABC transporter, ATP-bi 96.1 0.0022 7.4E-08 52.0 2.3 22 10-31 371-392 (587)
469 3j16_B RLI1P; ribosome recycli 96.1 0.0033 1.1E-07 51.1 3.1 22 11-32 381-402 (608)
470 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.004 1.4E-07 46.5 3.2 24 8-31 45-68 (322)
471 2dr3_A UPF0273 protein PH0284; 96.1 0.0037 1.3E-07 44.4 3.0 21 10-30 25-45 (247)
472 1pzn_A RAD51, DNA repair and r 96.0 0.0033 1.1E-07 47.5 2.8 22 10-31 133-154 (349)
473 3eie_A Vacuolar protein sortin 96.0 0.0048 1.6E-07 46.0 3.6 24 8-31 51-74 (322)
474 2qby_A CDC6 homolog 1, cell di 96.0 0.0034 1.2E-07 47.7 2.9 24 8-31 45-68 (386)
475 4b4t_J 26S protease regulatory 96.0 0.0037 1.3E-07 48.0 2.9 25 7-31 181-205 (405)
476 1sxj_E Activator 1 40 kDa subu 96.0 0.003 1E-07 47.6 2.4 21 11-31 39-59 (354)
477 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0047 1.6E-07 46.6 3.4 23 8-30 24-46 (359)
478 3co5_A Putative two-component 96.0 0.0022 7.7E-08 41.8 1.5 24 8-31 27-50 (143)
479 1ofh_A ATP-dependent HSL prote 96.0 0.0042 1.5E-07 45.7 3.0 24 8-31 50-73 (310)
480 1sxj_C Activator 1 40 kDa subu 96.0 0.004 1.4E-07 46.8 2.9 22 10-31 48-69 (340)
481 1fnn_A CDC6P, cell division co 96.0 0.0045 1.6E-07 47.1 3.2 22 10-31 46-67 (389)
482 2ocp_A DGK, deoxyguanosine kin 95.9 0.0052 1.8E-07 43.8 3.3 23 9-31 3-25 (241)
483 2qgz_A Helicase loader, putati 95.9 0.005 1.7E-07 45.7 3.2 24 8-31 152-175 (308)
484 4edh_A DTMP kinase, thymidylat 95.9 0.0063 2.1E-07 42.6 3.4 25 6-30 4-28 (213)
485 3v9p_A DTMP kinase, thymidylat 95.9 0.0042 1.5E-07 43.9 2.5 24 8-31 25-48 (227)
486 3qks_A DNA double-strand break 95.9 0.0057 1.9E-07 42.5 3.1 19 11-29 26-44 (203)
487 3tqf_A HPR(Ser) kinase; transf 95.8 0.0065 2.2E-07 40.9 3.1 24 9-32 17-40 (181)
488 2iw3_A Elongation factor 3A; a 95.8 0.0061 2.1E-07 52.0 3.5 24 10-33 463-486 (986)
489 4b4t_I 26S protease regulatory 95.8 0.0062 2.1E-07 47.1 3.2 25 7-31 215-239 (437)
490 3cr8_A Sulfate adenylyltranfer 95.8 0.0032 1.1E-07 50.5 1.7 24 8-31 369-392 (552)
491 2r62_A Cell division protease 95.8 0.0022 7.7E-08 46.4 0.7 23 9-31 45-67 (268)
492 3lv8_A DTMP kinase, thymidylat 95.7 0.0066 2.3E-07 43.2 3.1 26 6-31 25-50 (236)
493 4b4t_H 26S protease regulatory 95.7 0.0052 1.8E-07 48.0 2.7 25 7-31 242-266 (467)
494 2dhr_A FTSH; AAA+ protein, hex 95.7 0.0055 1.9E-07 48.5 2.9 23 9-31 65-87 (499)
495 1sxj_D Activator 1 41 kDa subu 95.7 0.0058 2E-07 45.9 2.9 22 10-31 60-81 (353)
496 2qp9_X Vacuolar protein sortin 95.7 0.006 2.1E-07 46.2 3.0 24 8-31 84-107 (355)
497 4f4c_A Multidrug resistance pr 95.7 0.0031 1.1E-07 55.8 1.6 21 10-30 1107-1127(1321)
498 2z4s_A Chromosomal replication 95.7 0.0056 1.9E-07 47.8 2.9 23 9-31 131-153 (440)
499 3lda_A DNA repair protein RAD5 95.7 0.0059 2E-07 47.0 2.9 20 10-29 180-199 (400)
500 2v1u_A Cell division control p 95.7 0.0049 1.7E-07 46.8 2.4 24 8-31 44-67 (387)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=5.6e-42 Score=243.81 Aligned_cols=194 Identities=36% Similarity=0.622 Sum_probs=143.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
++.+||+|+|.+|+|||||+++|..+.|...+.+|.+.++....+.+.+..+.+.||||+|++++..+...+++.+++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 35689999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|||++++++++.+..|+..+...... +.|++||+||+|+... +.+..+++..++...+ ++|+++||++|.|+
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~----~~piilVgNK~Dl~~~--r~V~~~e~~~~a~~~~-~~~~e~SAktg~nV 163 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDLADK--RQVSIEEGERKAKELN-VMFIETSAKAGYNV 163 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEEBTTTTBSH
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCC----CCeEEEEeeccchHhc--CcccHHHHhhHHHHhC-CeeEEEeCCCCcCH
Confidence 999999999999999999998877543 7899999999999765 7789999999999988 88999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCccccCC----CCCccCCCCCCC
Q 028654 166 EAAFECIAKNALKNEPQEEDYLPDTIDVG----GGQQQRSSGCEC 206 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~c~c 206 (206)
+++|+.|++.+...........+....+. ..+..++++|||
T Consensus 164 ~e~F~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~C 208 (216)
T 4dkx_A 164 KQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC 208 (216)
T ss_dssp HHHHHHHHHHC----------------------------------
T ss_pred HHHHHHHHHHHHhhhcccccccccccccccCCCCCCCCCCCCCce
Confidence 99999999998765554333333332222 223345567767
No 2
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=2.7e-38 Score=224.37 Aligned_cols=203 Identities=70% Similarity=1.149 Sum_probs=154.2
Q ss_pred CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec
Q 028654 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 80 (206)
|++.....++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence 66777789999999999999999999999998888888888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (206)
+|++|+|+|++++.++..+..|+..+..........+.|+++|+||+|+.. +....++...++......+++++||+
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (207)
T 1vg8_A 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN---RQVATKRAQAWCYSKNNIPYFETSAK 157 (207)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC---CCSCHHHHHHHHHHTTSCCEEECBTT
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc---cccCHHHHHHHHHhcCCceEEEEeCC
Confidence 999999999999999999999999888776543334789999999999973 45567777888775555899999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCC--CCCccccCCC-C-CccCCCCCCC
Q 028654 161 EGFNVEAAFECIAKNALKNEPQEED--YLPDTIDVGG-G-QQQRSSGCEC 206 (206)
Q Consensus 161 ~~~~i~~l~~~i~~~~~~~~~~~~~--~~~~~~~~~~-~-~~~~~~~c~c 206 (206)
+|.|++++|++|.+.+.++....+. ..+..+.... . ...+++||||
T Consensus 158 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c 207 (207)
T 1vg8_A 158 EAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAESCSC 207 (207)
T ss_dssp TTBSHHHHHHHHHHHHHHHHHHHHHHHHSCCCC-----------------
T ss_pred CCCCHHHHHHHHHHHHHHhccccccccCCCccccCCcccccccCCCCCCC
Confidence 9999999999999999876543211 1233333333 2 2367778977
No 3
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=5.2e-37 Score=217.67 Aligned_cols=175 Identities=37% Similarity=0.663 Sum_probs=152.8
Q ss_pred CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec
Q 028654 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 80 (206)
|+......++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 55455678999999999999999999999999888888888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (206)
+|++++|+|++++.++..+..|+..+...... +.|+++|+||+|+... +....++...++...+ .+++++||+
T Consensus 81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~ 153 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATS----TVLKLLVGNKCDLKDK--RVVEYDVAKEFADANK-MPFLETSAL 153 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CCEEECCTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CeEEEEeCC
Confidence 99999999999999999999999888766432 7899999999999765 4566777888887776 799999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCC
Q 028654 161 EGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 161 ~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
++.|++++|++|.+.+.+....
T Consensus 154 ~g~gi~~l~~~l~~~i~~~~~~ 175 (206)
T 2bcg_Y 154 DSTNVEDAFLTMARQIKESMSQ 175 (206)
T ss_dssp TCTTHHHHHHHHHHHHHHHCCH
T ss_pred CCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998876543
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=209.73 Aligned_cols=168 Identities=32% Similarity=0.535 Sum_probs=144.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 4578999999999999999999999887777777765544 456677888889999999999999988899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++++.++..+..|+..+...... .+.|+++|+||+|+... +....+++..++...+ .+++++||++|.|+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKED---ENVPFLLVGNKSDLEDK--RQVSVEEAKNRAEQWN-VNYVETSAKTRANV 164 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEECTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEeccCcccc--ccccHHHHHHHHHHhC-CeEEEEeCCCCCCH
Confidence 999999999999999999988876542 26799999999999754 4566778888887776 78999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 028654 166 EAAFECIAKNALKNE 180 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~ 180 (206)
+++|++|.+.+.+..
T Consensus 165 ~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 165 DKVFFDLMREIRARK 179 (206)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc
Confidence 999999999987753
No 5
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-35 Score=208.82 Aligned_cols=172 Identities=34% Similarity=0.651 Sum_probs=141.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45789999999999999999999999888778888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++++.++..+..|+..+..... .+.|+++|+||+|+... +.+..++...++...+ ++++++||+++.|+
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~----~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENAD----DNVAVGLIGNKSDLAHL--RAVPTEESKTFAQENQ-LLFTETSALNSENV 163 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC------CEEEEEECCGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCCC-CCCH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999999999998877642 27799999999999754 4566777888887776 89999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCC
Q 028654 166 EAAFECIAKNALKNEPQEE 184 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~~~~~ 184 (206)
+++|++|.+.+.+......
T Consensus 164 ~~l~~~l~~~i~~~~~~~~ 182 (223)
T 3cpj_B 164 DKAFEELINTIYQKVSKHQ 182 (223)
T ss_dssp HHHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHHhhhcc
Confidence 9999999999987766543
No 6
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.1e-34 Score=201.61 Aligned_cols=179 Identities=64% Similarity=1.068 Sum_probs=138.2
Q ss_pred CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC-CeEEEEEEeeCCCcccccccccccee
Q 028654 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYR 79 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~ 79 (206)
|+......++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+. +..+.+.+|||||++.+...+..+++
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR 80 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence 66666778999999999999999999999998887788888878877777776 56689999999999999999999999
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeec
Q 028654 80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA 159 (206)
Q Consensus 80 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (206)
.+|++++|+|++++.++..+..|+..+..........+.|+++|+||+|+.... +....++...++......+++++||
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~v~~~~~~~~~~~~~~~~~~~~Sa 159 (182)
T 1ky3_A 81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK-KIVSEKSAQELAKSLGDIPLFLTSA 159 (182)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG-CCSCHHHHHHHHHHTTSCCEEEEBT
T ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccc-ccCCHHHHHHHHHhcCCCeEEEEec
Confidence 999999999999999999999999998877654444588999999999996432 3456777888877555689999999
Q ss_pred cCCCCHHHHHHHHHHHHhhcC
Q 028654 160 KEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 160 ~~~~~i~~l~~~i~~~~~~~~ 180 (206)
+++.|++++|++|.+.+.++.
T Consensus 160 ~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 160 KNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp TTTBSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999988754
No 7
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.7e-34 Score=198.72 Aligned_cols=173 Identities=40% Similarity=0.700 Sum_probs=149.0
Q ss_pred CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec
Q 028654 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 80 (206)
|+......++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 55566778999999999999999999999998888888888888888888899988999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (206)
+|++++|+|++++.++..+..|+..+..... +.|+++|+||+|+... .....++...++...+ .+++++||+
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~ 153 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-----DVCRILVGNKNDDPER--KVVETEDAYKFAGQMG-IQLFETSAK 153 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-----TSEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CCEEECBTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCCCchh--cccCHHHHHHHHHHcC-CeEEEEECC
Confidence 9999999999999999999999998877643 7899999999998754 4566677788888777 799999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCC
Q 028654 161 EGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 161 ~~~~i~~l~~~i~~~~~~~~~ 181 (206)
++.|++++|++|.+.+.+...
T Consensus 154 ~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 154 ENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999998877544
No 8
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1e-33 Score=195.97 Aligned_cols=173 Identities=53% Similarity=0.979 Sum_probs=149.2
Q ss_pred ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcE
Q 028654 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 83 (206)
.....++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 34567999999999999999999999998887888888888888888889988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (206)
Q Consensus 84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (206)
+++|+|++++.++..+..|+..+..........+.|+++|+||+|+.. +....+++..++......+++++||+++.
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE---RQVSTEEAQAWCRDNGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS---CSSCHHHHHHHHHHTTCCCEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc---cccCHHHHHHHHHhcCCceEEEEeCCCCC
Confidence 999999999999999999999988776544445789999999999973 45677788888875556899999999999
Q ss_pred CHHHHHHHHHHHHhhc
Q 028654 164 NVEAAFECIAKNALKN 179 (206)
Q Consensus 164 ~i~~l~~~i~~~~~~~ 179 (206)
|++++|++|.+.+.++
T Consensus 160 gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 160 NVAAAFEEAVRRVLAT 175 (177)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999998764
No 9
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=6.8e-34 Score=199.96 Aligned_cols=172 Identities=39% Similarity=0.686 Sum_probs=152.7
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
....++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 34679999999999999999999999998888888888888888888999889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|+|++++.++..+..|+..+...... +.|+++|+||+|+... +....++...++...+ .+++++||+++.|
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g 165 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDLTTK--KVVDYTTAKEFADSLG-IPFLETSAKNATN 165 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CCEEEECTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CcEEEEeCCCCCC
Confidence 9999999999999999999988776542 7899999999999765 5667778888888877 8999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 028654 165 VEAAFECIAKNALKNEPQE 183 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~~~~ 183 (206)
++++|++|.+.+.+..+..
T Consensus 166 v~~l~~~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 166 VEQSFMTMAAEIKKRMGPG 184 (196)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 9999999999998876643
No 10
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1.2e-34 Score=201.73 Aligned_cols=174 Identities=40% Similarity=0.688 Sum_probs=122.9
Q ss_pred CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec
Q 028654 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 80 (206)
|+...+..++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (183)
T 2fu5_C 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 80 (183)
T ss_dssp --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence 54555678999999999999999999999888777778888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (206)
+|++++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+. +.+..+++..++...+ .+++++||+
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~ 153 (183)
T 2fu5_C 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHAS----ADVEKMILGNKCDVNDK--RQVSKERGEKLALDYG-IKFMETSAK 153 (183)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEEC--CCSC--CCSCHHHHHHHHHHHT-CEEEECCC-
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECccCCcc--CcCCHHHHHHHHHHcC-CeEEEEeCC
Confidence 9999999999999999999999988877643 27899999999999764 4566788888888777 799999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCC
Q 028654 161 EGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 161 ~~~~i~~l~~~i~~~~~~~~~ 181 (206)
++.|++++|++|.+.+.+...
T Consensus 154 ~~~~i~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 154 ANINVENAFFTLARDIKAKMD 174 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999998876544
No 11
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=7.4e-34 Score=197.34 Aligned_cols=171 Identities=35% Similarity=0.645 Sum_probs=147.5
Q ss_pred ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcE
Q 028654 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 83 (206)
.+...++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34568999999999999999999999998887777888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (206)
Q Consensus 84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (206)
+++|+|++++.+++.+..|+..+..... ++.|+++|+||+|+... +....+++..++...+ .+++++||+++.
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~ 160 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGN----PNMVMALAGNKSDLLDA--RKVTAEDAQTYAQENG-LFFMETSAKTAT 160 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEECCSSSCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCccccc--ccCCHHHHHHHHHHcC-CEEEEEECCCCC
Confidence 9999999999999999999988877643 27899999999999765 4566778888887776 899999999999
Q ss_pred CHHHHHHHHHHHHhhcCC
Q 028654 164 NVEAAFECIAKNALKNEP 181 (206)
Q Consensus 164 ~i~~l~~~i~~~~~~~~~ 181 (206)
|++++|++|.+.+.+.++
T Consensus 161 gi~~l~~~l~~~~~~~~~ 178 (181)
T 2efe_B 161 NVKEIFYEIARRLPRVQP 178 (181)
T ss_dssp THHHHHHHHHHTCC----
T ss_pred CHHHHHHHHHHHHHhcCC
Confidence 999999999998876554
No 12
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1e-33 Score=197.10 Aligned_cols=170 Identities=30% Similarity=0.534 Sum_probs=148.8
Q ss_pred cccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCc
Q 028654 3 SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (206)
Q Consensus 3 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 82 (206)
..+.+.++|+++|.+|+|||||+++|.+..+...+.++.+..+ .....+++..+.+.+|||||++.+......+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3456689999999999999999999999888877778776666 677778888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc-C
Q 028654 83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK-E 161 (206)
Q Consensus 83 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~ 161 (206)
++++|+|++++.++..+..|+..+...... .+.|+++|+||+|+.+. +.+..++...++...+ .+++++||+ +
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~ 165 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDR---ESFPMILVANKVDLMHL--RKVTRDQGKEMATKYN-IPYIETSAKDP 165 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTS---SCCCEEEEEECTTCSTT--CCSCHHHHHHHHHHHT-CCEEEEBCSSS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECCCchhc--cCcCHHHHHHHHHHhC-CeEEEeccCCC
Confidence 999999999999999999999888765433 27799999999999764 6677888888988887 899999999 9
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 028654 162 GFNVEAAFECIAKNALKN 179 (206)
Q Consensus 162 ~~~i~~l~~~i~~~~~~~ 179 (206)
+.|++++|++|.+.+.++
T Consensus 166 ~~~v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 166 PLNVDKTFHDLVRVIRQQ 183 (183)
T ss_dssp CBSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhhC
Confidence 999999999999988753
No 13
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=5e-34 Score=198.07 Aligned_cols=176 Identities=32% Similarity=0.529 Sum_probs=148.6
Q ss_pred CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec
Q 028654 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 80 (206)
|+......++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+......+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 80 (181)
T 2fn4_A 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80 (181)
T ss_dssp --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence 5555667899999999999999999999999887777777766654 667788888899999999999999989999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (206)
+|++++|+|++++.++..+..|+..+...... .+.|+++|+||+|+... +....++...++...+ .+++++||+
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~ 154 (181)
T 2fn4_A 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDR---DDFPVVLVGNKADLESQ--RQVPRSEASAFGASHH-VAYFEASAK 154 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECBTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEecCC
Confidence 99999999999999999999998888655432 27799999999999754 4566677777877776 799999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCC
Q 028654 161 EGFNVEAAFECIAKNALKNEPQE 183 (206)
Q Consensus 161 ~~~~i~~l~~~i~~~~~~~~~~~ 183 (206)
++.|++++|++|.+.+.+.....
T Consensus 155 ~~~gv~~l~~~l~~~~~~~~~~~ 177 (181)
T 2fn4_A 155 LRLNVDEAFEQLVRAVRKYQEQE 177 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHHHHHHhhccC
Confidence 99999999999999998766543
No 14
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=3.7e-34 Score=199.72 Aligned_cols=175 Identities=36% Similarity=0.647 Sum_probs=152.0
Q ss_pred CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec
Q 028654 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 80 (206)
|+...+..++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence 45555678999999999999999999999998888888888888888888888888999999999999999989999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (206)
+|++++|+|++++.++..+..|+..+..... .+.|+++|+||+|+... +....++...++...+ .+++++||+
T Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~ 155 (186)
T 2bme_A 83 AAGALLVYDITSRETYNALTNWLTDARMLAS----QNIVIILCGNKKDLDAD--REVTFLEASRFAQENE-LMFLETSAL 155 (186)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEecCC
Confidence 9999999999999999999999888776543 27899999999999653 4566677788887776 899999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCC
Q 028654 161 EGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 161 ~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
++.|++++|++|.+.+.++...
T Consensus 156 ~~~gi~~l~~~l~~~~~~~~~~ 177 (186)
T 2bme_A 156 TGENVEEAFVQCARKILNKIES 177 (186)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999998876543
No 15
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.5e-34 Score=201.69 Aligned_cols=169 Identities=38% Similarity=0.637 Sum_probs=149.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 45799999999999999999999999888888888888888888888998899999999999999998999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++++.++..+..|+..+..... .+.|+++|+||+|+... +.+..++...++...+ .+++++||+++.|+
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~gv 176 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYAS----NKVITVLVGNKIDLAER--REVSQQRAEEFSEAQD-MYYLETSAKESDNV 176 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CCEEECCTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999999999988877643 26799999999999753 4566777778877766 89999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 028654 166 EAAFECIAKNALKNEP 181 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~~ 181 (206)
+++|++|.+.+.++..
T Consensus 177 ~~l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 177 EKLFLDLACRLISEAR 192 (201)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887544
No 16
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=2.1e-33 Score=197.35 Aligned_cols=171 Identities=28% Similarity=0.526 Sum_probs=148.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 45799999999999999999999999887777777766554 45678888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
+|+|++++.++..+ ..|+..+..... +.|+++|+||+|+.....+.+..++...++...+...++++||+++.|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYID-----TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG 174 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-----TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC
Confidence 99999999999987 678877776543 789999999999987655778888999999888844499999999999
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 028654 165 VEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~~~ 182 (206)
++++|++|.+.+.++++.
T Consensus 175 i~~l~~~l~~~i~~~~~~ 192 (194)
T 3reg_A 175 LNEVFEKSVDCIFSNKPV 192 (194)
T ss_dssp HHHHHHHHHHHHHCSCC-
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 999999999999887653
No 17
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=9.2e-34 Score=194.91 Aligned_cols=167 Identities=37% Similarity=0.645 Sum_probs=140.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
....++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+......+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 35679999999999999999999999988877888888888878888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|+|++++.++..+..|+..+...... +.|+++|+||+|+... +....++...++...+ .+++++||+++.|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 155 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLEKE--RHVSIQEAESYAESVG-AKHYHTSAKQNKG 155 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGG----GSEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEEBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCC----CCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEecCCCCCC
Confidence 9999999999999999998887765432 6799999999999754 4566778888888776 8999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 028654 165 VEAAFECIAKNALK 178 (206)
Q Consensus 165 i~~l~~~i~~~~~~ 178 (206)
++++|++|.+.+.+
T Consensus 156 i~~l~~~l~~~~~~ 169 (170)
T 1z08_A 156 IEELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998865
No 18
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-33 Score=198.12 Aligned_cols=173 Identities=34% Similarity=0.599 Sum_probs=149.8
Q ss_pred ccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecC
Q 028654 2 ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (206)
Q Consensus 2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 81 (206)
+......++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (195)
T 1x3s_A 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA 88 (195)
T ss_dssp CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC
T ss_pred ccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 34445679999999999999999999999988888888888888888888888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccC
Q 028654 82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161 (206)
Q Consensus 82 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 161 (206)
|++++|+|++++.++..+..|+..+..... ..+.|+++|+||+|+.. +....++...++...+ .+++++||++
T Consensus 89 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 161 (195)
T 1x3s_A 89 QGVILVYDVTRRDTFVKLDNWLNELETYCT---RNDIVNMLVGNKIDKEN---REVDRNEGLKFARKHS-MLFIEASAKT 161 (195)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHTTCCS---CSCCEEEEEEECTTSSS---CCSCHHHHHHHHHHTT-CEEEECCTTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcC---cCCCcEEEEEECCcCcc---cccCHHHHHHHHHHcC-CEEEEecCCC
Confidence 999999999999999999999888765432 23789999999999954 4456677778887776 8899999999
Q ss_pred CCCHHHHHHHHHHHHhhcCC
Q 028654 162 GFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 162 ~~~i~~l~~~i~~~~~~~~~ 181 (206)
+.|++++|++|.+.+.+.+.
T Consensus 162 ~~gi~~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 162 CDGVQCAFEELVEKIIQTPG 181 (195)
T ss_dssp CTTHHHHHHHHHHHHHTSGG
T ss_pred CCCHHHHHHHHHHHHHhhhh
Confidence 99999999999999987544
No 19
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=4.3e-34 Score=203.49 Aligned_cols=173 Identities=31% Similarity=0.551 Sum_probs=141.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 3579999999999999999999999888777777776554 455667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc------ceecHHHHHHHHHHcCCCcEEEee
Q 028654 86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS------RVVSEKKAKAWCASKGNIPYFETS 158 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~s 158 (206)
+|+|++++.++..+. .|+..+..... +.|+++|+||+|+..... ..+..++...++...+..+++++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAP-----NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS 160 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc
Confidence 999999999999886 78888876643 789999999999875411 123677788888887756999999
Q ss_pred ccCCCCHHHHHHHHHHHHhhcCCCCC
Q 028654 159 AKEGFNVEAAFECIAKNALKNEPQEE 184 (206)
Q Consensus 159 ~~~~~~i~~l~~~i~~~~~~~~~~~~ 184 (206)
|+++.|++++|++|.+.+.+.....+
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~~~~~ 186 (212)
T 2j0v_A 161 SKTQQNVKAVFDTAIKVVLQPPRRKE 186 (212)
T ss_dssp TTTCTTHHHHHHHHHHHHHCC-----
T ss_pred CCCCCCHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999999999988765544
No 20
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.4e-34 Score=199.66 Aligned_cols=170 Identities=41% Similarity=0.656 Sum_probs=146.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
.+..++|+++|.+|+|||||+++|.+..+.....++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 45689999999999999999999999988777788888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|+|++++.++..+..|+..+..... .+.|+++|+||+|+... +....+++..++...+ .+++++||+++.|
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~g 172 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHGP----ENIVMAIAGNKCDLSDI--REVPLKDAKEYAESIG-AIVVETSAKNAIN 172 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHTTT-CEEEECBTTTTBS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCcC
Confidence 999999999999999999998877642 27899999999999643 4566778888888776 8999999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 028654 165 VEAAFECIAKNALKNEP 181 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~~ 181 (206)
+++++++|.+.+.+.++
T Consensus 173 i~~l~~~l~~~i~~~~~ 189 (192)
T 2fg5_A 173 IEELFQGISRQIPPLDP 189 (192)
T ss_dssp HHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 99999999998866544
No 21
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.1e-33 Score=198.38 Aligned_cols=169 Identities=38% Similarity=0.676 Sum_probs=145.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
....++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 35689999999999999999999999988877778888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+... +....++...++...+ .+++++||+++.|
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~~~----~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~g 170 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQHSS----SNMVIMLIGNKSDLESR--RDVKREEGEAFAREHG-LIFMETSAKTACN 170 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEECTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECcccCCc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence 999999999999999999988877643 27899999999999653 4566778888887776 7999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 028654 165 VEAAFECIAKNALKNE 180 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~ 180 (206)
++++|++|.+.+.++.
T Consensus 171 i~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 171 VEEAFINTAKEIYRKI 186 (191)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987754
No 22
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=8.9e-34 Score=200.30 Aligned_cols=170 Identities=35% Similarity=0.572 Sum_probs=141.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 45799999999999999999999999887777788877887888888888899999999999999998999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+... +.+..+++..++...+..+++++||+++.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYAG----SNIVQLLIGNKSDLSEL--REVSLAEAQSLAEHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCccccc--cccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence 99999999999999999988877652 27899999999999754 4566788888888877339999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 028654 166 EAAFECIAKNALKNEP 181 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~~ 181 (206)
+++|++|.+.+.++..
T Consensus 181 ~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 181 EEAFLRVATELIMRHG 196 (201)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999987654
No 23
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.7e-33 Score=194.99 Aligned_cols=167 Identities=37% Similarity=0.670 Sum_probs=146.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
....++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 34579999999999999999999999988877788888888888888888889999999999999999899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|+|++++.++..+..|+..+...... +.|+++|+||+|+... +....++...++...+ .+++++||+++.|
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 164 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKADLEAQ--RDVTYEEAKQFAEENG-LLFLEASAKTGEN 164 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTT
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence 9999999999999999999888776432 7899999999999653 4566778888888776 8999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 028654 165 VEAAFECIAKNALK 178 (206)
Q Consensus 165 i~~l~~~i~~~~~~ 178 (206)
++++|++|.+.+.+
T Consensus 165 i~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 165 VEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998864
No 24
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.5e-34 Score=199.64 Aligned_cols=170 Identities=37% Similarity=0.662 Sum_probs=142.2
Q ss_pred ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcE
Q 028654 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 83 (206)
.....++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 34568999999999999999999999988877778888888888888888888999999999999999888999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (206)
Q Consensus 84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (206)
+|+|+|++++.+++.+..|+..+...... +.|+++|+||+|+... +....++.+.++......+++++||+++.
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~----~~piilV~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 175 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASE----DAELLLVGNKLDCETD--REITRQQGEKFAQQITGMRFCEASAKDNF 175 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHTSTTCEEEECBTTTTB
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc--cccCHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 99999999999999999998887765432 7899999999999754 45667778888877655899999999999
Q ss_pred CHHHHHHHHHHHHhhc
Q 028654 164 NVEAAFECIAKNALKN 179 (206)
Q Consensus 164 ~i~~l~~~i~~~~~~~ 179 (206)
|++++|++|.+.+.++
T Consensus 176 gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 176 NVDEIFLKLVDDILKK 191 (192)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988764
No 25
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.5e-33 Score=194.75 Aligned_cols=170 Identities=31% Similarity=0.449 Sum_probs=146.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4578999999999999999999998888877778877666 677778888899999999999999988999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++++++++.+..|+..+...... .+.|+++|+||+|+... +....++...++...+ .+++++||+++.|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 156 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGK---VQIPIMLVGNKKDLHME--RVISYEEGKALAESWN-AAFLESSAKENQTA 156 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEECCTTSHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccchhc--ceecHHHHHHHHHHhC-CcEEEEecCCCCCH
Confidence 999999999999999999888776543 26799999999999755 6677888888988887 79999999999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 028654 166 EAAFECIAKNALKNEPQ 182 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~~~ 182 (206)
+++|++|.+.+.+....
T Consensus 157 ~~l~~~l~~~~~~~~~~ 173 (181)
T 3t5g_A 157 VDVFRRIILEAEKMDGA 173 (181)
T ss_dssp HHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999876543
No 26
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=2.9e-33 Score=195.83 Aligned_cols=167 Identities=35% Similarity=0.660 Sum_probs=147.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+...+..+.+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 45799999999999999999999999888777888888887788888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++++.++..+..|+..+..... .+.|+++|+||+|+... +....++...++...+ .+++++||+++.|+
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYSW----DNAQVILVGNKCDLEDE--RVVPAEDGRRLADDLG-FEFFEASAKENINV 172 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECcccccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCCCH
Confidence 99999999999999999988877642 27899999999999754 4556778888888777 79999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 028654 166 EAAFECIAKNALKN 179 (206)
Q Consensus 166 ~~l~~~i~~~~~~~ 179 (206)
+++|++|.+.+.++
T Consensus 173 ~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 173 KQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 27
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.6e-33 Score=193.54 Aligned_cols=167 Identities=40% Similarity=0.667 Sum_probs=145.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
+...++|+++|.+|+|||||+++|.++.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45679999999999999999999999888877778888888788888888889999999999999999889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|+|++++.++..+..|+..+..... ++.|+++|+||+|+... +....++...++...+ .+++++||+++.|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g 155 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQAS----PNIVIALSGNKADLANK--RAVDFQEAQSYADDNS-LLFMETSAKTSMN 155 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccCccc--cccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence 999999999999999999888877643 27899999999999754 4556677788877766 8999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 028654 165 VEAAFECIAKNALK 178 (206)
Q Consensus 165 i~~l~~~i~~~~~~ 178 (206)
++++|++|.+.+.+
T Consensus 156 i~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 156 VNEIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987643
No 28
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=2.5e-33 Score=192.70 Aligned_cols=166 Identities=39% Similarity=0.697 Sum_probs=141.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999998887788888888888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|+|++++.++..+..|+..+..... .+.|+++|+||+|+.. +....++...++...+ .+++++||+++.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~ 153 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNKSDMET---RVVTADQGEALAKELG-IPFIESSAKNDDNVN 153 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCTT---CCSCHHHHHHHHHHHT-CCEEECBTTTTBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccCCc---CccCHHHHHHHHHHcC-CeEEEEECCCCCCHH
Confidence 9999999999999999988877653 2779999999999943 4566777888887776 799999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 028654 167 AAFECIAKNALKNE 180 (206)
Q Consensus 167 ~l~~~i~~~~~~~~ 180 (206)
++|++|.+.+.++.
T Consensus 154 ~l~~~l~~~~~~~~ 167 (170)
T 1g16_A 154 EIFFTLAKLIQEKI 167 (170)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988754
No 29
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7e-33 Score=192.24 Aligned_cols=169 Identities=40% Similarity=0.679 Sum_probs=139.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 83 (206)
.+..++|+++|.+|+|||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 356799999999999999999999998875 4667788888877777888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (206)
Q Consensus 84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (206)
+++|+|++++.++..+..|+..+..... .+.|+++|+||+|+... +....++...++...+ ++++++||+++.
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 159 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ----HDVALMLLGNKVDSAHE--RVVKREDGEKLAKEYG-LPFMETSAKTGL 159 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECCSTTSC--CCSCHHHHHHHHHHHT-CCEEECCTTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccCcc--cccCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 9999999999999999999988877653 27899999999999864 5566777788887776 799999999999
Q ss_pred CHHHHHHHHHHHHhhcC
Q 028654 164 NVEAAFECIAKNALKNE 180 (206)
Q Consensus 164 ~i~~l~~~i~~~~~~~~ 180 (206)
|++++|++|.+.+.+..
T Consensus 160 gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 160 NVDLAFTAIAKELKRRS 176 (180)
T ss_dssp THHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999887654
No 30
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3.9e-33 Score=194.40 Aligned_cols=167 Identities=25% Similarity=0.434 Sum_probs=142.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
++..+||+++|.+|+|||||+++|.++.+...+.++ .. .....+.+++..+.+.+|||+|++.+. +++.+|++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GG-RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CE-EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cc-eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 456899999999999999999999999887766666 33 334777889999999999999998766 77889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|||++++.+++.+..|+..+..... ..+.|+++|+||+|+.....+.+..+++..++...+..+++++||+++.|
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSFRN---ASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTTSC---GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 999999999999999999998876532 13789999999999975555778888999999888778999999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 028654 165 VEAAFECIAKNALKNEP 181 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~~ 181 (206)
++++|++|.+.+.+...
T Consensus 167 v~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 167 VERVFQDVAQKVVALRK 183 (184)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999887653
No 31
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2.5e-33 Score=192.31 Aligned_cols=165 Identities=33% Similarity=0.704 Sum_probs=146.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+..++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+......+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 35689999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++++.++..+..|+..+..... +.|+++|+||+|+... +....++...++...+ .+++++||+++.|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 154 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLLDD--SCIKNEEAEGLAKRLK-LRFYRTSVKEDLNV 154 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHC-----SCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEECBTTTTBSS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccCcc--cccCHHHHHHHHHHcC-CeEEEEecCCCCCH
Confidence 99999999999999999988877652 7799999999999754 4456777888887777 79999999999999
Q ss_pred HHHHHHHHHHHhh
Q 028654 166 EAAFECIAKNALK 178 (206)
Q Consensus 166 ~~l~~~i~~~~~~ 178 (206)
++++++|.+.+.+
T Consensus 155 ~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 155 SEVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998865
No 32
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=2.5e-33 Score=195.87 Aligned_cols=168 Identities=33% Similarity=0.565 Sum_probs=142.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..++|+++|++|+|||||+++|.+..+...+.++.+ ......+.+++..+.+.+|||||++.+...+..++..+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 568999999999999999999999887766666663 4445667788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|+|++++.++..+..|+..+...... .+.|+++|+||+|+.. .....+....++...+ .+++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~ 154 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDS---EDVPMVLVGNKCDLPS---RTVDTKQAQDLARSYG-IPFIETSAKTRQGVD 154 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTC---SCCCEEEEEECTTSSS---CSSCHHHHHHHHHHHT-CCEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECccCcc---cccCHHHHHHHHHHcC-CeEEEEeCCCCCCHH
Confidence 99999999999999999888776443 3789999999999974 4566778888888877 899999999999999
Q ss_pred HHHHHHHHHHhhcCCC
Q 028654 167 AAFECIAKNALKNEPQ 182 (206)
Q Consensus 167 ~l~~~i~~~~~~~~~~ 182 (206)
++|++|.+.+.+....
T Consensus 155 ~l~~~l~~~~~~~~~~ 170 (189)
T 4dsu_A 155 DAFYTLVREIRKHKEK 170 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999998776543
No 33
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.9e-33 Score=192.27 Aligned_cols=166 Identities=37% Similarity=0.639 Sum_probs=145.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
+.++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999998887788888888888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc-ceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS-RVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
|+|++++.++..+..|+..+..... .+.|+++|+||+|+..... +....++...++...+ .+++++||+++.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 156 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQAS----KDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENV 156 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CEEEECCTTTCTTH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 9999999999999999988877653 2789999999999875422 4556677777777776 79999999999999
Q ss_pred HHHHHHHHHHHh
Q 028654 166 EAAFECIAKNAL 177 (206)
Q Consensus 166 ~~l~~~i~~~~~ 177 (206)
+++|++|.+.+.
T Consensus 157 ~~l~~~l~~~i~ 168 (170)
T 1ek0_A 157 NDVFLGIGEKIP 168 (170)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHHHHh
Confidence 999999988664
No 34
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=5.6e-33 Score=190.91 Aligned_cols=165 Identities=38% Similarity=0.655 Sum_probs=145.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+..++|+++|++|+|||||+++|.+..+.....++.+.++....+.+.+....+.+|||||.+.+......+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45799999999999999999999999888778888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++++.++..+..|+..+..... ++.|+++|+||+|+... +....++...++...+ .+++++||+++.|+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~~iilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 156 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGP----PSIVVAIAGNKCDLTDV--REVMERDAKDYADSIH-AIFVETSAKNAINI 156 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC----TTSEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECCccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCcCH
Confidence 99999999999999899888876532 37899999999999754 4566777888887776 89999999999999
Q ss_pred HHHHHHHHHHHh
Q 028654 166 EAAFECIAKNAL 177 (206)
Q Consensus 166 ~~l~~~i~~~~~ 177 (206)
+++|++|.+.+.
T Consensus 157 ~~l~~~i~~~i~ 168 (170)
T 1z0j_A 157 NELFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 35
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=3.2e-33 Score=196.51 Aligned_cols=171 Identities=20% Similarity=0.292 Sum_probs=141.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc-ccccceecCcE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGADC 83 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~ 83 (206)
....++|+++|.+|+|||||+++|.+........++.+.+.....+.+++..+.+.+|||+|++.+.. ....+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 35679999999999999999999976554434455666677777788899999999999999987664 66677889999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (206)
Q Consensus 84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (206)
+|+|||++++.++..+..|+..+...... .+.|+++|+||+|+... +.+..++...++...+ .+++++||+++.
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPH---HDLPVILVGNKSDLARS--REVSLEEGRHLAGTLS-CKHIETSAALHH 173 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTT---SCCCEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEEEBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEeechhcccc--CCcCHHHHHHHHHHhC-CEEEEEcCCCCC
Confidence 99999999999999999999888765432 26899999999999764 5567788888888776 799999999999
Q ss_pred CHHHHHHHHHHHHhhcCC
Q 028654 164 NVEAAFECIAKNALKNEP 181 (206)
Q Consensus 164 ~i~~l~~~i~~~~~~~~~ 181 (206)
|++++|++|++.+.+...
T Consensus 174 ~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 174 NTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp SHHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHhcC
Confidence 999999999999876544
No 36
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=2.8e-33 Score=199.55 Aligned_cols=173 Identities=22% Similarity=0.390 Sum_probs=143.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
....+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..+++.+|++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 34579999999999999999999999988888788877665 45666778889999999999999999999999999999
Q ss_pred EEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC----------CcceecHHHHHHHHHHcCCCc
Q 028654 85 VLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIP 153 (206)
Q Consensus 85 i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----------~~~~~~~~~~~~~~~~~~~~~ 153 (206)
|+|||+++++++.. +..|+..+..... +.|+++|+||+|+... ..+.+..++...++...+..+
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 177 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYCP-----STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEI 177 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHCT-----TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCE
Confidence 99999999999998 6889988887643 7899999999999752 125677888899999888449
Q ss_pred EEEeeccCCCC-HHHHHHHHHHHHhhcCCCC
Q 028654 154 YFETSAKEGFN-VEAAFECIAKNALKNEPQE 183 (206)
Q Consensus 154 ~~~~s~~~~~~-i~~l~~~i~~~~~~~~~~~ 183 (206)
++++||+++.| ++++|++|++.+.+.....
T Consensus 178 ~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~~ 208 (214)
T 3q3j_B 178 YLEGSAFTSEKSIHSIFRTASMLCLNKPSPL 208 (214)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHC-----
T ss_pred EEEeccCCCcccHHHHHHHHHHHHhccCcCC
Confidence 99999999998 9999999999998766543
No 37
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=4.3e-33 Score=190.94 Aligned_cols=165 Identities=30% Similarity=0.540 Sum_probs=141.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999888777777766544 4556677788899999999999999888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|+|++++.++..+..|+..+...... .+.|+++|+||+|+... +....++...++......+++++||++|.|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDT---EDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWCNCAFLESSAKSKINVN 155 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCc---CCCcEEEEEECcccccc--ccCCHHHHHHHHHHccCCcEEEecCCCCCCHH
Confidence 99999999999998998888776432 27899999999999754 45667788888887755899999999999999
Q ss_pred HHHHHHHHHHh
Q 028654 167 AAFECIAKNAL 177 (206)
Q Consensus 167 ~l~~~i~~~~~ 177 (206)
+++++|.+.+.
T Consensus 156 ~l~~~l~~~i~ 166 (167)
T 1c1y_A 156 EIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998774
No 38
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=194.87 Aligned_cols=167 Identities=34% Similarity=0.668 Sum_probs=147.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 45799999999999999999999999888777888888887788888888899999999999999998999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++++.++..+..|+..+..... .+.|+++|+||+|+... +....++...++...+ .+++++||+++.|+
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 158 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYSW----DNAQVLLVGNKCDMEDE--RVVSSERGRQLADHLG-FEFFEASAKDNINV 158 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC----SSCEEEEEEECTTCTTS--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECcccCcc--cccCHHHHHHHHHHCC-CeEEEEECCCCCCH
Confidence 99999999999999999988876642 27799999999999764 4566778888888777 79999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 028654 166 EAAFECIAKNALKN 179 (206)
Q Consensus 166 ~~l~~~i~~~~~~~ 179 (206)
+++|++|.+.+.+.
T Consensus 159 ~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 159 KQTFERLVDVICEK 172 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 39
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.4e-34 Score=200.87 Aligned_cols=170 Identities=35% Similarity=0.641 Sum_probs=150.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
.++.+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+......+++.+|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 45689999999999999999999999888888888888888888888888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+... +....++...++...+ .+++++||+++.|
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 172 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKTYSW----DNAQVILVGNKCDMEEE--RVVPTEKGQLLAEQLG-FDFFEASAKENIS 172 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence 999999999999999999998877542 27899999999999654 5667788888888877 7999999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 028654 165 VEAAFECIAKNALKNEP 181 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~~ 181 (206)
++++|++|.+.+.+..+
T Consensus 173 i~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 173 VRQAFERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999887644
No 40
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=6.2e-33 Score=190.62 Aligned_cols=166 Identities=21% Similarity=0.305 Sum_probs=130.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc-ccccceecCcEEEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGADCCVL 86 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~vi~ 86 (206)
.+||+++|++|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+||+||++.+.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999998777666666667777788888899999999999999988776 66667888999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|+|+++++++..+..|+..+...... .+.|+++|+||+|+.+. +....++...++...+ .+++++||+++.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 155 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPH---HDLPVILVGNKSDLARS--REVSLEEGRHLAGTLS-CKHIETSAALHHNTR 155 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTT---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBSHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccC---CCCCEEEEeeCcchhhc--ccCCHHHHHHHHHHcC-CcEEEecCccCCCHH
Confidence 99999999999999999988876542 26799999999999754 5677888888888887 799999999999999
Q ss_pred HHHHHHHHHHhhc
Q 028654 167 AAFECIAKNALKN 179 (206)
Q Consensus 167 ~l~~~i~~~~~~~ 179 (206)
++|++|.+.+..+
T Consensus 156 ~l~~~l~~~i~~~ 168 (169)
T 3q85_A 156 ELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 41
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=197.87 Aligned_cols=170 Identities=36% Similarity=0.618 Sum_probs=139.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 45799999999999999999999998888777888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++++.++..+..|+..+..... .+.|+++|+||+|+... +....++...++...+ .+++++||+++.|+
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~SA~~g~gi 175 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLAS----PNIVVILCGNKKDLDPE--REVTFLEASRFAQENE-LMFLETSALTGENV 175 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEECTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCCcccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999999999988876543 27899999999999653 4556677777877776 89999999999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 028654 166 EAAFECIAKNALKNEPQ 182 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~~~ 182 (206)
+++|++|.+.+.++...
T Consensus 176 ~~l~~~l~~~i~~~~~~ 192 (200)
T 2o52_A 176 EEAFLKCARTILNKIDS 192 (200)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999998876544
No 42
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=5.3e-33 Score=192.55 Aligned_cols=166 Identities=37% Similarity=0.644 Sum_probs=145.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+..++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 34689999999999999999999998888888888888888888888998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++++.++..+..|+..+..... .+.|+++|+||+|+... +....++...++...+ .+++++||+++.|+
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 164 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERG----SDVIIMLVGNKTDLSDK--RQVSTEEGERKAKELN-VMFIETSAKAGYNV 164 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHT----TSSEEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEEEBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCccccc--CcCCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence 99999999999999999988876643 27899999999999754 4556677777777776 89999999999999
Q ss_pred HHHHHHHHHHHhh
Q 028654 166 EAAFECIAKNALK 178 (206)
Q Consensus 166 ~~l~~~i~~~~~~ 178 (206)
++++++|.+.+.+
T Consensus 165 ~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 165 KQLFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987654
No 43
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.7e-33 Score=194.92 Aligned_cols=168 Identities=34% Similarity=0.657 Sum_probs=146.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45799999999999999999999999888777788888887788888888899999999999999998999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++++.++..+..|+..+..... .+.|+++|+||+|+... +....++...++...+ ++++++||+++.|+
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 175 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHAE----ATIVVMLVGNKSDLSQA--REVPTEEARMFAENNG-LLFLETSALDSTNV 175 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEECTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEECCCcccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999988899888865432 37899999999999754 4456677888877776 79999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 028654 166 EAAFECIAKNALKNE 180 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~ 180 (206)
+++|++|.+.+.++.
T Consensus 176 ~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 176 ELAFETVLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887643
No 44
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=3.5e-33 Score=193.45 Aligned_cols=172 Identities=33% Similarity=0.520 Sum_probs=146.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCC-eEEEEEEeeCCCccccccccccceecCcE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 83 (206)
.+..++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+ ..+.+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45679999999999999999999999888777778887778888888876 67899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC
Q 028654 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 162 (206)
+++|+|++++.+++.+..|+..+....... .+.| +++|+||+|+.+. +....++...++...+ ++++++||+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEES--ETQPLVALVGNKIDLEHM--RTIKPEKHLRFCQENG-FSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHH--TCCCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhccc--CCCCeEEEEEEccccccc--cccCHHHHHHHHHHcC-CcEEEEeCCCC
Confidence 999999999999999989988887653210 0335 8999999999754 4566777888887776 79999999999
Q ss_pred CCHHHHHHHHHHHHhhcCC
Q 028654 163 FNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 163 ~~i~~l~~~i~~~~~~~~~ 181 (206)
.|++++|++|.+.+.+.+.
T Consensus 158 ~gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp TTHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHhhhh
Confidence 9999999999999987654
No 45
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=5.4e-33 Score=196.76 Aligned_cols=172 Identities=22% Similarity=0.442 Sum_probs=142.4
Q ss_pred CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec
Q 028654 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 80 (206)
|+......++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+......+++.
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 99 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 99 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC
Confidence 444556789999999999999999999999988877777776555 4556677888999999999999999989999999
Q ss_pred CcEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC----------CcceecHHHHHHHHHHc
Q 028654 81 ADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASK 149 (206)
Q Consensus 81 ~d~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----------~~~~~~~~~~~~~~~~~ 149 (206)
+|++|+|+|++++.++..+ ..|+..+..... +.|+++|+||+|+... ..+.+..++...++...
T Consensus 100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (205)
T 1gwn_A 100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 174 (205)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence 9999999999999999988 788888876542 7899999999999742 12456778888888887
Q ss_pred CCCcEEEeecc-CCCCHHHHHHHHHHHHhh
Q 028654 150 GNIPYFETSAK-EGFNVEAAFECIAKNALK 178 (206)
Q Consensus 150 ~~~~~~~~s~~-~~~~i~~l~~~i~~~~~~ 178 (206)
+..+++++||+ ++.|++++|+.|.+.+++
T Consensus 175 ~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 175 GAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 66789999999 689999999999998875
No 46
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=6.5e-33 Score=194.03 Aligned_cols=168 Identities=37% Similarity=0.642 Sum_probs=142.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc-cccccceecCcE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADC 83 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~ 83 (206)
.+..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+. ..+..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3457999999999999999999999998888788888888888888888888999999999999888 778888999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC-
Q 028654 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG- 162 (206)
Q Consensus 84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~- 162 (206)
+++|+|++++.++..+..|+..+...... .+.|+++|+||+|+... +....++...++...+ .+++++||+++
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 170 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLA---NDIPRILVGNKCDLRSA--IQVPTDLAQKFADTHS-MPLFETSAKNPN 170 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCEEECCSSSGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--ceeCHHHHHHHHHHcC-CEEEEEeCCcCC
Confidence 99999999999999999999988877532 27899999999999654 4566777888887776 79999999999
Q ss_pred --CCHHHHHHHHHHHHhh
Q 028654 163 --FNVEAAFECIAKNALK 178 (206)
Q Consensus 163 --~~i~~l~~~i~~~~~~ 178 (206)
.|++++|++|.+.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGSCHHHHHHHHC-----
T ss_pred cccCHHHHHHHHHHHHhh
Confidence 9999999999887754
No 47
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.5e-33 Score=196.20 Aligned_cols=169 Identities=26% Similarity=0.421 Sum_probs=140.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..++..+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 4579999999999999999999999887766666665444 345567788889999999999999888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++++.++..+..|+..+...... ..+.|+++|+||+|+.. +....++...++...+ .+++++||+++.|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 158 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGS--VEDIPVMLVGNKCDETQ---REVDTREAQAVAQEWK-CAFMETSAKMNYNV 158 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSC--GGGSCEEEEEECTTCSS---CSSCHHHHHHHHHHHT-CEEEECBTTTTBSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccCCc---cccCHHHHHHHHHHhC-CeEEEEecCCCCCH
Confidence 999999999998888887777665322 12679999999999975 3455677777777776 78999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 028654 166 EAAFECIAKNALKNEP 181 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~~ 181 (206)
+++|++|.+.+.++..
T Consensus 159 ~~l~~~l~~~~~~~~~ 174 (199)
T 2gf0_A 159 KELFQELLTLETRRNM 174 (199)
T ss_dssp HHHHHHHHHHCSSSCE
T ss_pred HHHHHHHHHHHhhhhc
Confidence 9999999998866543
No 48
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1.9e-32 Score=192.21 Aligned_cols=171 Identities=41% Similarity=0.667 Sum_probs=146.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeE-EEEEEeCCe---------EEEEEEeeCCCcccccccc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFL-TKEVQFEDR---------LFTLQIWDTAGQERFQSLG 74 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~~~~ 74 (206)
....++|+++|++|+|||||+++|.+..+...+.++.+.++. ...+.+.+. .+.+.+|||||++.+....
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 456799999999999999999999998887777788777776 556666655 7899999999999999989
Q ss_pred ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcE
Q 028654 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY 154 (206)
Q Consensus 75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
..+++.+|++++|+|++++.++..+..|+..+...... .+.|+++|+||+|+... +....+++..++...+ .++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~ 161 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS---ENPDIVLCGNKSDLEDQ--RAVKEEEARELAEKYG-IPY 161 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS---SSCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CCE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CCE
Confidence 99999999999999999999999999999888776532 27799999999999754 4556777888887776 799
Q ss_pred EEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 155 FETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
+++||+++.|++++|++|.+.+.++..
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998876543
No 49
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2e-32 Score=189.68 Aligned_cols=168 Identities=21% Similarity=0.385 Sum_probs=138.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...+||+++|.+|+|||||+++|.++.+.. +.++.+.. ....+.+++..+.+.+|||||++. ..+++.+|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 467999999999999999999999988775 56666544 366677888889999999999876 45778899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|+++++++..+..|+..+...... ..++.|+++|+||+|+.....+.+..+++..++...+..+++++||++|.|+
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 156 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGE-GRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV 156 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCS-SSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence 999999999999999887666555432 1237899999999999644446677888888888765589999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 028654 166 EAAFECIAKNALKNEP 181 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~~ 181 (206)
+++|++|.+.+.+...
T Consensus 157 ~~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 157 DRVFQEVAQKVVTLRK 172 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998876543
No 50
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.7e-32 Score=189.96 Aligned_cols=167 Identities=26% Similarity=0.474 Sum_probs=143.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 3578999999999999999999999988777777776554 456667788899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcE
Q 028654 86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPY 154 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 154 (206)
+|+|+++++++..+. .|+..+..... +.|+++|+||+|+.... .+.+..++...++...+..++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 169 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAP-----NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY 169 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEE
Confidence 999999999999886 78888877643 77999999999997642 135667888888888874589
Q ss_pred EEeeccCCCCHHHHHHHHHHHHhh
Q 028654 155 FETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
+++||+++.|++++|++|.+.++.
T Consensus 170 ~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 170 VECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999998864
No 51
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=2e-32 Score=187.64 Aligned_cols=165 Identities=32% Similarity=0.539 Sum_probs=139.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 468999999999999999999999887766666665444 4556678888899999999999998888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|+|+++++++..+..|+..+....... +.|+++|+||+|+... +....++...++...+ .+++++||+++.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 155 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK--RQVSVEEAKNRADQWN-VNYVETSAKTRANVD 155 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCT---TSCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECcccccc--CccCHHHHHHHHHHcC-CeEEEeCCCCCCCHH
Confidence 999999999999999999888776432 6799999999999754 4466778888887776 799999999999999
Q ss_pred HHHHHHHHHHhh
Q 028654 167 AAFECIAKNALK 178 (206)
Q Consensus 167 ~l~~~i~~~~~~ 178 (206)
++|++|.+.+.+
T Consensus 156 ~l~~~l~~~i~~ 167 (168)
T 1u8z_A 156 KVFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 52
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.7e-33 Score=196.15 Aligned_cols=170 Identities=31% Similarity=0.468 Sum_probs=140.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+.+..+.+.+|||||++.+...+..+++.+|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4578999999999999999999999988877777776655 556666677789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++++.++..+..|+..+..... ..+.|+++|+||+|+... +....++...++...+ .+++++||+++.|+
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 174 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHG---KTRVPVVLVGNKADLSPE--REVQAVEGKKLAESWG-ATFMESSARENQLT 174 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC--------CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECCTTCHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECccCccc--cccCHHHHHHHHHHhC-CeEEEEeCCCCCCH
Confidence 99999999999999999888875432 237799999999999754 5667778888888887 79999999999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 028654 166 EAAFECIAKNALKNEPQ 182 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~~~ 182 (206)
+++|++|.+.+.+....
T Consensus 175 ~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 175 QGIFTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999999886553
No 53
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=188.89 Aligned_cols=169 Identities=25% Similarity=0.377 Sum_probs=131.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc--cccccccceecCcE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLGVAFYRGADC 83 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~ 83 (206)
+..++|+++|++|+|||||+++|.+..+.... ++.+.+.....+.+++..+.+.+|||||++. +......+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 35689999999999999999999988765433 3455666677778888889999999999877 45556677888999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (206)
Q Consensus 84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (206)
+++|+|++++.++..+..|+..+..... ..+.|+++|+||+|+.+. +....++...++...+ .+++++||++|.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~ 154 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQ---ADHVPIILVGNKADLARC--REVSVEEGRACAVVFD-CKFIETSATLQH 154 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC-------CCEEEEEECTTCTTT--CCSCHHHHHHHHHHHT-SEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhc---cCCCCEEEEEEChhhccc--cccCHHHHHHHHHHcC-CeEEEEecCCCC
Confidence 9999999999999999999888766432 237899999999999765 4566677777777776 799999999999
Q ss_pred CHHHHHHHHHHHHhhcCC
Q 028654 164 NVEAAFECIAKNALKNEP 181 (206)
Q Consensus 164 ~i~~l~~~i~~~~~~~~~ 181 (206)
|++++|++|.+.+.+...
T Consensus 155 gi~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 155 NVAELFEGVVRQLRLRRR 172 (175)
T ss_dssp SHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 999999999998876543
No 54
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3.4e-32 Score=193.73 Aligned_cols=167 Identities=38% Similarity=0.691 Sum_probs=146.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..++..+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999999888788888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.. +....++...++...+ ++++++||+++.|+
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNKSDMET---RVVTADQGEALAKELG-IPFIESSAKNDDNV 169 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTT----TCSEEEEEEECTTCSS---CCSCHHHHHHHHHHHT-CCEEECBTTTTBSS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCCCcc---cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999999999988877653 2679999999999943 4566677777877776 78999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 028654 166 EAAFECIAKNALKNE 180 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~ 180 (206)
+++|++|.+.+.+..
T Consensus 170 ~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 170 NEIFFTLAKLIQEKI 184 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887754
No 55
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=9.2e-33 Score=194.80 Aligned_cols=168 Identities=33% Similarity=0.576 Sum_probs=135.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 45799999999999999999999999887777788887887888888888899999999999999988889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC----CcceecHHHHHHHHHHcCCCcEEEeeccC
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----NSRVVSEKKAKAWCASKGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 161 (206)
+|+|++++.++..+..|+..+...... +.|+++|+||+|+... ..+.+..++...++...+ ++++++||++
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~ 180 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAHE----TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG-ALFCETSAKD 180 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC-------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-CEEEECCTTT
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccccccccccccCHHHHHHHHHHcC-CeEEEeeCCC
Confidence 999999999999999998887765432 6799999999998631 124566777788887776 7999999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 028654 162 GFNVEAAFECIAKNALK 178 (206)
Q Consensus 162 ~~~i~~l~~~i~~~~~~ 178 (206)
+.|++++|++|.+.+.+
T Consensus 181 g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 181 GSNIVEAVLHLAREVKK 197 (199)
T ss_dssp CTTHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998864
No 56
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=2e-32 Score=190.81 Aligned_cols=168 Identities=21% Similarity=0.443 Sum_probs=142.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
....++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+......+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999999988777777776555 44566788889999999999999999899999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC----------CcceecHHHHHHHHHHcCCCc
Q 028654 85 VLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIP 153 (206)
Q Consensus 85 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----------~~~~~~~~~~~~~~~~~~~~~ 153 (206)
++|+|++++.++..+ ..|+..+..... +.|+++|+||+|+... ..+.+..++...++...+..+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 157 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence 999999999999988 788887776542 7899999999999742 124567788888888877679
Q ss_pred EEEeecc-CCCCHHHHHHHHHHHHhh
Q 028654 154 YFETSAK-EGFNVEAAFECIAKNALK 178 (206)
Q Consensus 154 ~~~~s~~-~~~~i~~l~~~i~~~~~~ 178 (206)
++++||+ ++.|++++|+.|.+.+++
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 9999999 689999999999998875
No 57
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=191.42 Aligned_cols=168 Identities=24% Similarity=0.412 Sum_probs=138.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
....++|+++|.+|+|||||+++|.+..+...+.++.+..+ .....+++..+.+.+|||||++.+... ..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 34679999999999999999999999988877777776655 455667888899999999999888764 5688999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeec-cCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA-KEGF 163 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~ 163 (206)
++|||+++++++..+..|+..+...... ...+.|+++|+||+|+... +.+..++...++...+ ++++++|| +++.
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~g~ 171 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKE-TQRSIPALLLGNKLDMAQY--RQVTKAEGVALAGRFG-CLFFEVSACLDFE 171 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEECCSSSCSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEECcchhhc--CccCHHHHHHHHHHcC-CcEEEEeecCccc
Confidence 9999999999999999999888776421 0127799999999999654 5567788888888887 79999999 8999
Q ss_pred CHHHHHHHHHHHHhh
Q 028654 164 NVEAAFECIAKNALK 178 (206)
Q Consensus 164 ~i~~l~~~i~~~~~~ 178 (206)
|++++|++|.+.+.+
T Consensus 172 gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 172 HVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhh
Confidence 999999999998764
No 58
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=2.3e-32 Score=193.02 Aligned_cols=171 Identities=27% Similarity=0.447 Sum_probs=137.5
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
....++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 34578999999999999999999999887776677765444 55667788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCc
Q 028654 85 VLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIP 153 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~ 153 (206)
++|+|++++.++..+. .|+..+..... +.|+++|+||+|+.... .+.+..++...++...+..+
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHCP-----KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAAS 170 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCS-----SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcE
Confidence 9999999999999986 78888876643 78999999999997531 24566778888888877559
Q ss_pred EEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 154 YFETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 154 ~~~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
++++||+++.|++++|++|.+.+.+...
T Consensus 171 ~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 171 YIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999887544
No 59
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=3.7e-32 Score=189.48 Aligned_cols=170 Identities=25% Similarity=0.483 Sum_probs=143.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4578999999999999999999999888777667765444 456677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcE
Q 028654 86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPY 154 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 154 (206)
+|+|++++.++..+. .|+..+..... +.|+++|+||+|+.... .+.+..++...++...+..++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 156 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-----CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 999999999999886 68887776543 77999999999997542 134566777888888774599
Q ss_pred EEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 155 FETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
+++||++|.|++++|++|.+.+.+.++
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 157 LECSALTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred EEecCCCccCHHHHHHHHHHHHhcccc
Confidence 999999999999999999999986554
No 60
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=1.8e-32 Score=187.68 Aligned_cols=165 Identities=32% Similarity=0.510 Sum_probs=140.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..++|+++|++|+|||||++++.++.+...+.++.+.. ....+.+.+....+.+|||||++.+......+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988777666666543 36667788888899999999999998888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|+|++++.++..+..|+..+...... .+.|+++|+||+|+... +....++...++...+ .+++++||+++.|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 154 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRY---EKVPVILVGNKVDLESE--REVSSSEGRALAEEWG-CPFMETSAKSKTMVD 154 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTT---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SCEEEECTTCHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECCccccc--ccCCHHHHHHHHHHhC-CCEEEecCCCCcCHH
Confidence 99999999999999998888776542 27899999999998654 4566677777877776 789999999999999
Q ss_pred HHHHHHHHHHhh
Q 028654 167 AAFECIAKNALK 178 (206)
Q Consensus 167 ~l~~~i~~~~~~ 178 (206)
+++++|.+.+.+
T Consensus 155 ~l~~~l~~~~~~ 166 (167)
T 1kao_A 155 ELFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 61
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=4.6e-32 Score=185.73 Aligned_cols=164 Identities=24% Similarity=0.350 Sum_probs=119.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v 87 (206)
.+||+++|++|+|||||+++|.+..... ..++.+..+ ...+.+++..+.+.+||+||++.+......+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 5799999999999999999998766442 233333333 45667888899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (206)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (206)
+|++++++++.+..|+..+..... ..+.|+++|+||+|+.+. +....++...++...+ .+++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQ---TDDVPIILVGNKSDLVRS--REVSVDEGRACAVVFD-CKFIETSAALHHNVQA 153 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC------CCCEEEEEECTTCCSS--CCSCHHHHHHHHHHTT-CEEEECBGGGTBSHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEeccccccc--cccCHHHHHHHHHHhC-CcEEEeccCCCCCHHH
Confidence 999999999999999888876432 237899999999999865 5677778888888777 8999999999999999
Q ss_pred HHHHHHHHHhhc
Q 028654 168 AFECIAKNALKN 179 (206)
Q Consensus 168 l~~~i~~~~~~~ 179 (206)
+|++|.+.+.+.
T Consensus 154 l~~~l~~~~~~~ 165 (166)
T 3q72_A 154 LFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
No 62
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=6.5e-32 Score=191.02 Aligned_cols=164 Identities=32% Similarity=0.597 Sum_probs=142.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeE-----------------------------
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL----------------------------- 56 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 56 (206)
...++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+.+..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 457999999999999999999999998887888888877877777776654
Q ss_pred --------EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654 57 --------FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (206)
Q Consensus 57 --------~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 128 (206)
..+.+|||||++.+...+..+++.+|++++|+|++++.++..+..|+..+.... +.|+++|+||+|
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~------~~piilv~NK~D 158 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS------NYIIILVANKID 158 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------CCEEEEEEECTT
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC------CCcEEEEEECCC
Confidence 889999999999999999999999999999999999999999999988887654 479999999999
Q ss_pred CCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
... +....+++..++...+ .+++++||+++.|++++|++|.+.+.++
T Consensus 159 -~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 159 -KNK--FQVDILEVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp -CC---CCSCHHHHHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred -ccc--ccCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 322 5667788888888876 7999999999999999999999988764
No 63
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=3.5e-32 Score=189.69 Aligned_cols=169 Identities=31% Similarity=0.525 Sum_probs=143.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
.+..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 34579999999999999999999999887776666665444 45566788888999999999999988889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|+|++++.++..+..|+..+....... +.|+++|+||+|+... +....++...++...+ .+++++||+++.|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 167 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK--RQVSVEEAKNRAEQWN-VNYVETSAKTRAN 167 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCT---TCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc--CccCHHHHHHHHHHcC-CeEEEeCCCCCCC
Confidence 99999999999999999999888776432 6799999999999754 4566778888887776 7999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 028654 165 VEAAFECIAKNALKNE 180 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~ 180 (206)
++++|++|.+.+.+++
T Consensus 168 i~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 168 VDKVFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999987654
No 64
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=3.1e-33 Score=199.75 Aligned_cols=170 Identities=42% Similarity=0.697 Sum_probs=143.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCe----------EEEEEEeeCCCccccccccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLGV 75 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~~~~ 75 (206)
+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+. .+.+.||||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 45799999999999999999999998887777777777777777766665 78999999999999998889
Q ss_pred cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEE
Q 028654 76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF 155 (206)
Q Consensus 76 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (206)
.+++.+|++|+|+|++++.++..+..|+..+.... ...+.|+++|+||+|+... +....++...++...+ .+++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~---~~~~~piilV~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~ 176 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---YCENPDIVLIGNKADLPDQ--REVNERQARELADKYG-IPYF 176 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC---TTTCCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc---CcCCCCEEEEEECCccccc--cccCHHHHHHHHHHCC-CcEE
Confidence 99999999999999999999988888877654322 1237899999999999754 4566778888888776 7999
Q ss_pred EeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 156 ETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 156 ~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
++||+++.|++++|++|.+.+.++..
T Consensus 177 ~~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 177 ETSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998877543
No 65
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1e-31 Score=189.67 Aligned_cols=168 Identities=25% Similarity=0.508 Sum_probs=142.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
....++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 345789999999999999999999999888777777766654 3467788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc----------ceecHHHHHHHHHHcCCCc
Q 028654 85 VLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIP 153 (206)
Q Consensus 85 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~ 153 (206)
++|+|++++.++..+ ..|...+..... +.|+++|+||+|+..... +.+..++...++...+..+
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 175 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFG 175 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcE
Confidence 999999999999988 678777766542 779999999999976421 3456677788888877558
Q ss_pred EEEeeccCCCCHHHHHHHHHHHHhh
Q 028654 154 YFETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 154 ~~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
++++||+++.|++++|++|.+.+++
T Consensus 176 ~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 176 YLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999998764
No 66
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-31 Score=189.88 Aligned_cols=170 Identities=25% Similarity=0.484 Sum_probs=137.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+..++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 45689999999999999999999998887776677665553 34667888899999999999999998999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc----------ceecHHHHHHHHHHcCCCcE
Q 028654 86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPY 154 (206)
Q Consensus 86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 154 (206)
+|+|++++.++..+ ..|+..+..... +.|+++|+||+|+..... +.+..++...++...+..++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCP-----NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDY 176 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEE
Confidence 99999999999888 678777766542 789999999999975411 23556677778877775589
Q ss_pred EEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 155 FETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
+++||+++.|++++|++|.+.+++...
T Consensus 177 ~~~SA~~g~gi~el~~~l~~~i~~~~~ 203 (207)
T 2fv8_A 177 LECSAKTKEGVREVFETATRAALQKRY 203 (207)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHSCCC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999886543
No 67
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=3.2e-31 Score=185.48 Aligned_cols=170 Identities=32% Similarity=0.532 Sum_probs=132.8
Q ss_pred ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcE
Q 028654 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 83 (206)
+.+..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+.+..+.+.+|||||++.+...+..++..+|+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 345689999999999999999999999887766666654433 4566778888899999999999999989999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (206)
Q Consensus 84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (206)
+++|+|+++..++..+..|+..+...... .+.|+++|+||+|+.. +....+++..++...+ ++++++||+++.
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 168 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDS---DDVPMVLVGNKCDLPT---RTVDTKQAHELAKSYG-IPFIETSAKTRQ 168 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTC---SCCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT-CCEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCeEEEEEECCcCCc---ccCCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 99999999999999999998888776532 2679999999999976 3456777888888777 799999999999
Q ss_pred CHHHHHHHHHHHHhhcCC
Q 028654 164 NVEAAFECIAKNALKNEP 181 (206)
Q Consensus 164 ~i~~l~~~i~~~~~~~~~ 181 (206)
|+++++++|.+.+.+...
T Consensus 169 gi~~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 169 GVEDAFYTLVREIRQYRM 186 (190)
T ss_dssp THHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999877544
No 68
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-31 Score=190.44 Aligned_cols=169 Identities=23% Similarity=0.344 Sum_probs=134.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc-cccccccceecCcE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGADC 83 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~ 83 (206)
...+||+++|.+|+|||||+++|.+.... ....++++.++....+.+++..+.+.+|||+|.+. +......+++.+|+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 45799999999999999999999964431 22234456666677778889889999999999776 44456677888999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (206)
Q Consensus 84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (206)
+|+|||++++.+++.+..|...+..... ..+.|+++|+||+|+... +.+..++...++...+ ++++++||++|.
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~---~~~~piilVgNK~DL~~~--r~v~~~e~~~~a~~~~-~~~~e~SAk~g~ 188 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQ---TEDIPIILVGNKSDLVRC--REVSVSEGRACAVVFD-CKFIETSAAVQH 188 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGG---GTTSCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCcEEEEEEChHHhcC--ceEeHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 9999999999999999888877754321 127899999999999753 4566677777777766 799999999999
Q ss_pred CHHHHHHHHHHHHhhcC
Q 028654 164 NVEAAFECIAKNALKNE 180 (206)
Q Consensus 164 ~i~~l~~~i~~~~~~~~ 180 (206)
|++++|++|++.+....
T Consensus 189 ~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 189 NVKELFEGIVRQVRLRR 205 (211)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999886544
No 69
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=4e-31 Score=180.72 Aligned_cols=164 Identities=32% Similarity=0.557 Sum_probs=139.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..++|+++|.+|+|||||++++.+..+...+.++.+.. ....+.+.+..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 35899999999999999999999988776666665443 35566678888899999999999988888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|+|+++..++..+..|+..+...... .+.|+++|+||+|+.. +....++...++...+ .+++++|++++.|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~---~~~p~iiv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 153 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDS---DDVPMVLVGNKSDLAA---RTVESRQAQDLARSYG-IPYIETSAKTRQGVE 153 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTC---SCCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT-CCEEEECTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEEchhhhh---cccCHHHHHHHHHHcC-CeEEEecCCCCCCHH
Confidence 99999999999999998888776542 2679999999999976 3456677778877776 799999999999999
Q ss_pred HHHHHHHHHHhh
Q 028654 167 AAFECIAKNALK 178 (206)
Q Consensus 167 ~l~~~i~~~~~~ 178 (206)
+++++|.+.+.+
T Consensus 154 ~l~~~l~~~~~~ 165 (166)
T 2ce2_X 154 DAFYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 70
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=191.25 Aligned_cols=169 Identities=33% Similarity=0.544 Sum_probs=122.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++..+|++++
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 468999999999999999999999887766666664443 4566778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc----------ceecHHHHHHHHHHcCCCcEE
Q 028654 87 VYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPYF 155 (206)
Q Consensus 87 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 155 (206)
|+|++++.++..+. .|+..+..... +.|+++|+||+|+..... +.+..++...++...+..+++
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 186 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFCK-----KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYL 186 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCS-----SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEE
Confidence 99999999999886 78888776542 789999999999976421 245667778888888745999
Q ss_pred EeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 156 ETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 156 ~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
++||++|.|++++|++|.+.+.+.+.
T Consensus 187 ~~SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 187 ECSARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred EecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999987654
No 71
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.1e-32 Score=189.50 Aligned_cols=167 Identities=26% Similarity=0.465 Sum_probs=141.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++. ...+..++..+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4579999999999999999999999988777777776544 45567788889999999999887 667778889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC-C
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF-N 164 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~ 164 (206)
+|+|++++++++.+..|+..+...... .+.|+++|+||+|+... +....++...++...+ .+++++||+++. |
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~~g 177 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKP---KNVTLILVGNKADLDHS--RQVSTEEGEKLATELA-CAFYECSACTGEGN 177 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTT---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SEEEECCTTTCTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCC---CCCcEEEEEECcccccc--cccCHHHHHHHHHHhC-CeEEEECCCcCCcC
Confidence 999999999999999998888776432 27899999999999764 4566778888887776 899999999999 9
Q ss_pred HHHHHHHHHHHHhhcC
Q 028654 165 VEAAFECIAKNALKNE 180 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~ 180 (206)
++++|++|.+.+.++.
T Consensus 178 i~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 178 ITEIFYELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999987754
No 72
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=7.4e-32 Score=192.70 Aligned_cols=172 Identities=31% Similarity=0.504 Sum_probs=142.0
Q ss_pred ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC-CeEEEEEEeeCCCccccccccccceecCc
Q 028654 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 82 (206)
.+...++|+++|.+|+|||||+++|.+..+...+.++.+........... +..+.+.+|||||++.+......++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 34568999999999999999999999888777777777766666555443 34488999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC
Q 028654 83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 83 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 162 (206)
++|+|+|+++..++..+..|+..+...... +.|+++|+||+|+... .....+....++...+ .+++++||++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 159 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANKIDIKNR--QKISKKLVMEVLKGKN-YEYFEISAKTA 159 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCS----SSCEEEEEECTTCC------CCHHHHHHHTTTCC-CEEEEEBTTTT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CcEEEEecCCC
Confidence 999999999999999999999988877643 5799999999999764 4566677777766665 89999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCC
Q 028654 163 FNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 163 ~~i~~l~~~i~~~~~~~~~~ 182 (206)
.|++++|++|.+.+.+....
T Consensus 160 ~gv~~l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 160 HNFGLPFLHLARIFTGRPDL 179 (218)
T ss_dssp BTTTHHHHHHHHHHHCCTTC
T ss_pred CCHHHHHHHHHHHHhccccc
Confidence 99999999999999876554
No 73
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=201.82 Aligned_cols=168 Identities=40% Similarity=0.720 Sum_probs=137.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
....++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 45679999999999999999999999888888788888888888888999889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|+|++++.++..+..|+..+..... .+.|+++|+||+|+... +....++...++...+ .+++++||+++.|
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~vSA~~g~g 182 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLTTK--KVVDYTTAKEFADSLG-IPFLETSAKNATN 182 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-----CCSEEEEC-CCSSCC----CCCCSCC-CHHHHTTT-CCBCCCCC---HH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcc----CCCCEEEEEECccCCcc--ccCCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence 999999999999999999888865433 37899999999999764 4444455666777766 8899999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 028654 165 VEAAFECIAKNALKN 179 (206)
Q Consensus 165 i~~l~~~i~~~~~~~ 179 (206)
++++|++|.+.+.++
T Consensus 183 v~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 183 VEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998877553
No 74
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=2.4e-32 Score=193.72 Aligned_cols=171 Identities=27% Similarity=0.486 Sum_probs=109.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCcccccceeeEEEEEEeCCe--EEEEEEeeCCCccccccccccceecC
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQFEDR--LFTLQIWDTAGQERFQSLGVAFYRGA 81 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~ 81 (206)
...++|+++|.+|+|||||+++|.+. .+...+.++.+.++....+.+.+. .+.+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 35689999999999999999999988 666677777776777777888876 88999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCC-CCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654 82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG-GNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (206)
Q Consensus 82 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (206)
|++++|+|++++.++..+..|+..+...... ...+.|+++|+||+|+.. . +.+..+++..++...+ .+++++||+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~ 173 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPD-RERPLRAVLVANKTDLPPQR--HQVRLDMAQDWATTNT-LDFFDVSAN 173 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSC-TTSCCEEEEEEECC---------CCCHHHHHHHHHHTT-CEEEECCC-
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcc-cccCCcEEEEEECcccchhh--ccCCHHHHHHHHHHcC-CEEEEeccC
Confidence 9999999999999999999999988876531 012789999999999976 3 5566788888888877 899999999
Q ss_pred C-CCCHHHHHHHHHHHHhhcC
Q 028654 161 E-GFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 161 ~-~~~i~~l~~~i~~~~~~~~ 180 (206)
+ +.|++++|++|.+.+.+..
T Consensus 174 ~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 174 PPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp ------CHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHH
Confidence 9 9999999999999887654
No 75
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=1.6e-31 Score=189.13 Aligned_cols=165 Identities=25% Similarity=0.466 Sum_probs=138.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|.+|+|||||+++|.++.+...+.++.+ ......+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4579999999999999999999999888777666664 444566677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc----------ceecHHHHHHHHHHcCCCcE
Q 028654 86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPY 154 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 154 (206)
+|+|++++.++..+. .|+..+..... +.|+++|+||+|+..... +....++...++...+..++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 181 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 181 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCS-----SCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEE
Confidence 999999999999986 78888776642 789999999999976421 22566778888888886789
Q ss_pred EEeeccCCCCHHHHHHHHHHHH
Q 028654 155 FETSAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~~ 176 (206)
+++||++|.|++++|++|.+.+
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 182 LECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EECCTTTCTTHHHHHHHHHHTT
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998864
No 76
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.98 E-value=6.3e-32 Score=193.50 Aligned_cols=169 Identities=28% Similarity=0.604 Sum_probs=144.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
....++|+++|.+|+|||||+++|+.+.+...+.++.+.+.......+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 45679999999999999999999877766667778888888888888888899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (206)
++|+|++++.++..+..|+..+..... +.|+++|+||+|+.+... .++...++...+ .+++++||+++.|
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~-~~~~~~Sa~~~~g 161 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKDRKV----KAKSIVFHRKKN-LQYYDISAKSNYN 161 (221)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHST-----TCCEEEEEECTTSSSCSS----CGGGCCHHHHHT-CEEEECBGGGTBT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCccccccc----cHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence 999999999999999999999988753 789999999999976421 123344555555 7999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 028654 165 VEAAFECIAKNALKNEPQE 183 (206)
Q Consensus 165 i~~l~~~i~~~~~~~~~~~ 183 (206)
++++|++|.+.+...+...
T Consensus 162 i~~l~~~l~~~l~~~~~~~ 180 (221)
T 3gj0_A 162 FEKPFLWLARKLIGDPNLE 180 (221)
T ss_dssp TTHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHhCcccc
Confidence 9999999999998876653
No 77
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=2.9e-31 Score=182.59 Aligned_cols=166 Identities=27% Similarity=0.418 Sum_probs=136.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+|||||++.+......++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 358999999999999999999999887766666665444 3455667778899999999999988888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
|+|++++.+++.+..|+..+...... .++.|+++|+||+|+... +....++...++...+ .+++++||+++.|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~pii~v~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 155 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGD--VESIPIMLVGNKCDESPS--REVQSSEAEALARTWK-CAFMETSAKLNHNVK 155 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEEccccccc--cccCHHHHHHHHHHhC-CeEEEecCCCCcCHH
Confidence 99999999998888888877765421 126799999999999754 4455666777777766 799999999999999
Q ss_pred HHHHHHHHHHhh
Q 028654 167 AAFECIAKNALK 178 (206)
Q Consensus 167 ~l~~~i~~~~~~ 178 (206)
++|++|.+.+.+
T Consensus 156 ~l~~~l~~~~~~ 167 (172)
T 2erx_A 156 ELFQELLNLEKR 167 (172)
T ss_dssp HHHHHHHHTCCS
T ss_pred HHHHHHHHHHhh
Confidence 999999986543
No 78
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.98 E-value=4.6e-32 Score=188.43 Aligned_cols=167 Identities=29% Similarity=0.509 Sum_probs=125.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|++|+|||||++++.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45689999999999999999999998877666666544332 23345566678899999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc--------ceecHHHHHHHHHHcCCCcEEE
Q 028654 86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS--------RVVSEKKAKAWCASKGNIPYFE 156 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
+|+|++++.+++.+. .|+..+..... +.|+++|+||+|+.+... ..+..++...++...+..++++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 159 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAP-----GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE 159 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEE
Confidence 999999999999886 68888876642 779999999999875421 1236677788888777459999
Q ss_pred eeccCCCCHHHHHHHHHHHHhh
Q 028654 157 TSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 157 ~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
+||+++.|++++|++|.+.+++
T Consensus 160 ~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 160 CSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp CCTTTCTTHHHHHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999998764
No 79
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=1.2e-31 Score=188.50 Aligned_cols=167 Identities=21% Similarity=0.305 Sum_probs=130.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc-----------ccccceeeEEEEE-EeCCeEEEEEEeeCCCcccccc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY-----------KATIGADFLTKEV-QFEDRLFTLQIWDTAGQERFQS 72 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~~~ 72 (206)
....+||+++|.+|+|||||++.+.+.. ...+ .++.+.++....+ .+++..+.+.+|||||++.+..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 3568999999999999999997766543 3332 2233333333333 4566788999999999999999
Q ss_pred ccccceecCcEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHH
Q 028654 73 LGVAFYRGADCCVLVYDVN------VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC 146 (206)
Q Consensus 73 ~~~~~~~~~d~vi~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~ 146 (206)
.+..+++.+|++|+|+|++ +.+++..+..|+..+. ....+.|+++|+||+|+.+. ...+++..++
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-----~~~~~~piilv~NK~Dl~~~----~~~~~~~~~~ 160 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-----LTLDDVPIVIQVNKRDLPDA----LPVEMVRAVV 160 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-----CCTTSSCEEEEEECTTSTTC----CCHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-----cccCCCCEEEEEEchhcccc----cCHHHHHHHH
Confidence 9999999999999999999 4566666667766652 12247899999999999753 6677888888
Q ss_pred HHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 147 ASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 147 ~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
...+..+++++||+++.|++++|++|.+.+.++..
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 161 DPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred HhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 87773399999999999999999999999887654
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=2.8e-30 Score=181.92 Aligned_cols=174 Identities=18% Similarity=0.298 Sum_probs=128.3
Q ss_pred ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCc
Q 028654 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 82 (206)
......+|+|+|.+|+|||||+++|.+..+.. .+.++.+... ..+.. ..+.+.+|||||++.+...+..+++.+|
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 88 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEK--GRVAFTVFDMGGAKKFRGLWETYYDNID 88 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEE--TTEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEe--CCEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence 34568899999999999999999999998876 6677766333 33333 3478999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCC----CCCCCCcEEEEeeCCCCCCCCcceecHHHHHH-HHHHcCCCcEEEe
Q 028654 83 CCVLVYDVNVMKSFDNLNNWREEFLIQASP----SDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA-WCASKGNIPYFET 157 (206)
Q Consensus 83 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 157 (206)
++|+|+|+++++++..+..|+..+...... ....+.|+++|+||+|+..........+.... .......++++++
T Consensus 89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (199)
T 4bas_A 89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFAS 168 (199)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEEC
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEe
Confidence 999999999999999998888877654110 01126799999999999865221111111111 1112234789999
Q ss_pred eccCCCCHHHHHHHHHHHHhhcCC
Q 028654 158 SAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
||+++.|++++|++|.+.+.+...
T Consensus 169 Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 169 NGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred eCCCccCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999987654
No 81
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=6.8e-30 Score=179.11 Aligned_cols=168 Identities=23% Similarity=0.359 Sum_probs=131.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc-cccccccceecCc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRK--FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGAD 82 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d 82 (206)
+..++|+++|.+|+|||||+++|.+.. +... .++++.+.....+.+++..+.+.+|||+|.+. .......+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 456899999999999999999998643 2332 33455666677778889889999999999765 4455667778899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC
Q 028654 83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 83 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 162 (206)
++++|||++++++++.+..|+..+...... .+.|+++|+||+|+... +.+..++...++...+ .+++++||++|
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~---~~~piilV~NK~Dl~~~--r~v~~~~~~~~a~~~~-~~~~e~SA~~g 156 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQT---EDIPIILVGNKSDLVRX--REVSVSEGRAXAVVFD-XKFIETSAAVQ 156 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTT---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCeEEEEEechhhhcc--ccccHHHHHHHHHHhC-CceEEeccccC
Confidence 999999999999999998888877654321 26799999999998653 4556667777766665 78999999999
Q ss_pred CCHHHHHHHHHHHHhhcC
Q 028654 163 FNVEAAFECIAKNALKNE 180 (206)
Q Consensus 163 ~~i~~l~~~i~~~~~~~~ 180 (206)
.|++++|++|.+.+....
T Consensus 157 ~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 157 HNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp BSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhc
Confidence 999999999999886543
No 82
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=3.6e-31 Score=185.03 Aligned_cols=163 Identities=23% Similarity=0.384 Sum_probs=126.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+|+|.+|+|||||+++|.+..+...+.++.+..+. .+... .+.+.+|||||++.+...+..++..+|+++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 45799999999999999999999998887667777665553 23333 478899999999999998999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH-H---cCCCcEEEeeccC
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-S---KGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~s~~~ 161 (206)
+|+|+++++++..+..|+..+..... ..+.|+++|+||+|+.... ..+++..... . ....+++++||++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 168 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQ---LQGIPVLVLGNKRDLPGAL----DEKELIEKMNLSAIQDREICCYSISCKE 168 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcc---cCCCCEEEEEECCCCccCC----CHHHHHHHhChhhhccCCeeEEEEECCC
Confidence 99999999999998888877754321 1278999999999997642 1222222111 1 1235799999999
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 028654 162 GFNVEAAFECIAKNALKN 179 (206)
Q Consensus 162 ~~~i~~l~~~i~~~~~~~ 179 (206)
+.|++++|++|.+.+.++
T Consensus 169 g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 169 KDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp CTTHHHHHHHHHHTCC--
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999877543
No 83
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=8.9e-31 Score=182.85 Aligned_cols=166 Identities=18% Similarity=0.261 Sum_probs=124.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|.+|+|||||+++|.++.+. .+.++.+.. ...+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45789999999999999999999988765 455555433 33444554 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeeccC
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~ 161 (206)
+|+|+++++++..+..|+..+..... ..+.|+++|+||+|+... ...+++...... ....+++++||++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 161 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKEC----MTVAEISQFLKLTSIKDHQWHIQACCALT 161 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGG---GTTCEEEEEEECTTSTTC----CCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchh---hCCCeEEEEEECCCCcCC----CCHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence 99999999999999888888765421 127899999999999753 223344433321 1236899999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCCC
Q 028654 162 GFNVEAAFECIAKNALKNEPQE 183 (206)
Q Consensus 162 ~~~i~~l~~~i~~~~~~~~~~~ 183 (206)
+.|+++++++|.+.+.+..+.+
T Consensus 162 g~gi~~l~~~l~~~~~~~~~~~ 183 (187)
T 1zj6_A 162 GEGLCQGLEWMMSRLKIRLEHH 183 (187)
T ss_dssp TBTHHHHHHHHHHHHCC-----
T ss_pred CcCHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999887766543
No 84
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=7.2e-30 Score=175.55 Aligned_cols=162 Identities=20% Similarity=0.331 Sum_probs=125.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|++|+|||||+++|.++.+. .+.++.+ .....+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 34689999999999999999999988764 3445544 3344455553 78899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH-H---cCCCcEEEeeccC
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-S---KGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~s~~~ 161 (206)
+|+|++++.++..+..|+..+..... ..+.|+++|+||+|+.+.. ..+++..... . ...++++++||++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEE---LRKAILVVFANKQDMEQAM----TSSEMANSLGLPALKDRKWQIFKTSATK 152 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCC----CHHHHHHHHTGGGCTTSCEEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchh---hCCCEEEEEEECCCCcCCC----CHHHHHHHhCchhccCCceEEEECcCCC
Confidence 99999999999888888777654321 1378999999999997642 1222222211 1 1235899999999
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 028654 162 GFNVEAAFECIAKNALKN 179 (206)
Q Consensus 162 ~~~i~~l~~~i~~~~~~~ 179 (206)
+.|++++|++|.+.+.++
T Consensus 153 ~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 153 GTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp CTTHHHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHhhc
Confidence 999999999999988764
No 85
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=4.2e-30 Score=179.24 Aligned_cols=162 Identities=19% Similarity=0.338 Sum_probs=127.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|++|+|||||++++.+.. ...+.++.+ .....+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 457999999999999999999999887 555566655 3344455554 78899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeeccC
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~ 161 (206)
+|+|++++.++..+..|+..+..... ..+.|+++|+||+|+... ...+++...... ....+++++||++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEER---LAGATLLIFANKQDLPGA----LSCNAIQEALELDSIRSHHWRIQGCSAVT 163 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC----CCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChh---cCCCcEEEEEeCccCCCC----CCHHHHHHHhChhhccCCceEEEEeeCCC
Confidence 99999999999998888877765321 227899999999999764 222333332211 1236899999999
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 028654 162 GFNVEAAFECIAKNALKN 179 (206)
Q Consensus 162 ~~~i~~l~~~i~~~~~~~ 179 (206)
+.|+++++++|.+.+.++
T Consensus 164 ~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CTTHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999998765
No 86
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=1.9e-30 Score=177.29 Aligned_cols=159 Identities=16% Similarity=0.312 Sum_probs=120.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~ 88 (206)
+||+++|++|+|||||++++.++.+.. +.++.+ .....+... .+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877653 455554 333344443 378899999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH-H---cCCCcEEEeeccCCCC
Q 028654 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-S---KGNIPYFETSAKEGFN 164 (206)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~s~~~~~~ 164 (206)
|+++++++..+..|+..+.... ...+.|+++|+||+|+.+.. ..+++..... . ....+++++||+++.|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAED---ELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRHRNWYIQATCATSGDG 148 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred ECCCHHHHHHHHHHHHHHHhch---hhcCCeEEEEEECcCCcCCC----CHHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence 9999999998888887775432 12377999999999997642 2222222111 1 1235799999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 028654 165 VEAAFECIAKNALKN 179 (206)
Q Consensus 165 i~~l~~~i~~~~~~~ 179 (206)
++++|++|.+.+.++
T Consensus 149 i~~l~~~l~~~i~~~ 163 (164)
T 1r8s_A 149 LYEGLDWLSNQLRNQ 163 (164)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999987643
No 87
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.5e-29 Score=177.11 Aligned_cols=158 Identities=21% Similarity=0.298 Sum_probs=124.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|++|+|||||++++.++.+. .+.++.+. ....+.+++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 34679999999999999999999988764 34445443 345566666 78999999999999998999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc-----------CCCcE
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK-----------GNIPY 154 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 154 (206)
+|+|++++++++.+..|+..+..... ..+.|+++|+||+|+... ...+++..+.... ...++
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAE---LKDVPFVILGNKIDAPNA----VSEAELRSALGLLNTTGSQRIEGQRPVEV 168 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTC----CCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred EEEECCChHHHHHHHHHHHHHHcchh---hcCCCEEEEEECCCCcCC----CCHHHHHHHhCCccccccccccccceEEE
Confidence 99999999999999888888765321 137899999999999752 4455555544321 34679
Q ss_pred EEeeccCCCCHHHHHHHHHHH
Q 028654 155 FETSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~ 175 (206)
+++||++|.|++++|++|.+.
T Consensus 169 ~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 169 FMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEeECCcCCCHHHHHHHHHhh
Confidence 999999999999999999764
No 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=7.7e-30 Score=179.67 Aligned_cols=158 Identities=18% Similarity=0.278 Sum_probs=119.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|++|+|||||+++|.+..+. .+.++.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 34689999999999999999999987754 344554443 34555666 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc----------------
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK---------------- 149 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~---------------- 149 (206)
+|+|+++++++..+..|+..+..... ..+.|+++|+||+|+.. ....+++..+....
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDET---IANVPILILGNKIDRPE----AISEERLREMFGLYGQTTGKGSVSLKELNA 170 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTSCEEEEEECTTSTT----CCCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEEECCCccc----cCCHHHHHHHhCcccccccccccccccccC
Confidence 99999999999999888888765321 23789999999999975 34556666655421
Q ss_pred CCCcEEEeeccCCCCHHHHHHHHHHH
Q 028654 150 GNIPYFETSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 150 ~~~~~~~~s~~~~~~i~~l~~~i~~~ 175 (206)
...+++++||++|.|++++|++|.+.
T Consensus 171 ~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 171 RPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 23679999999999999999999864
No 89
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=3.7e-30 Score=180.48 Aligned_cols=161 Identities=16% Similarity=0.310 Sum_probs=119.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|++|+|||||+++|.++.+. .+.++.+ .....+...+ +.+.+|||||++.+...+..+++.+|+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 45789999999999999999999987765 3344444 3344444544 78999999999999988888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH-H---cCCCcEEEeeccC
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-S---KGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~s~~~ 161 (206)
+|+|+++++++..+..|+..+..... ..+.|+++|+||+|+.... ..+++..... . ....+++++||++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~---~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~SA~~ 174 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDE---LRDAVLLVFANKQDMPNAM----PVSELTDKLGLQHLRSRTWYVQATCATQ 174 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccc---cCCCeEEEEEECCCCCCCC----CHHHHHHHhCcccccCCceEEEECcCCC
Confidence 99999999999998888887764321 2378999999999997542 2222222111 1 1235799999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 028654 162 GFNVEAAFECIAKNALK 178 (206)
Q Consensus 162 ~~~i~~l~~~i~~~~~~ 178 (206)
+.|++++|++|.+.+.+
T Consensus 175 g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 175 GTGLYDGLDWLSHELSK 191 (192)
T ss_dssp TBTHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 99999999999998754
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.9e-29 Score=175.59 Aligned_cols=164 Identities=18% Similarity=0.287 Sum_probs=127.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC-CCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRK-FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
...++|+++|.+|+|||||+++|.+.. +...+.++.+ .....+.+.+ ..+.+|||||++.+...+..+++.+|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 457899999999999999999999877 4555555554 4455555554 6889999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH--Hc--CCCcEEEeecc
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA--SK--GNIPYFETSAK 160 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~s~~ 160 (206)
++|+|++++.++..+..|+..+...... ...+.|+++|+||+|+... ...+++..+.. .. ...+++++||+
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDI-KHRRIPILFFANKMDLRDA----VTSVKVSQLLCLENIKDKPWHICASDAI 169 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTT-TTSCCCEEEEEECTTSTTC----CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhh-ccCCCeEEEEEeCcCcccC----CCHHHHHHHhChhhccCCceEEEEccCC
Confidence 9999999999999988888887664321 0137899999999999753 33445555442 21 24689999999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 028654 161 EGFNVEAAFECIAKNALK 178 (206)
Q Consensus 161 ~~~~i~~l~~~i~~~~~~ 178 (206)
++.|++++|++|.+.+.+
T Consensus 170 ~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 170 KGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTBTHHHHHHHHHHHC--
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999987643
No 91
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=4.3e-30 Score=178.54 Aligned_cols=162 Identities=23% Similarity=0.349 Sum_probs=122.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|++|+|||||+++|.+..+. .+.++.+ .....+.+++ +.+.+|||||++.+...+..++..+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45789999999999999999999987543 3344544 3334455554 78899999999999888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeeccC
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~ 161 (206)
+|+|+++++++..+..|+..+.... ...+.|+++|+||+|+.... ..+++...... ....+++++||++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEE---KLSCVPVLIFANKQDLLTAA----PASEIAEGLNLHTIRDRVWQIQSCSALT 161 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCG---GGTTCCEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECcCcccCC----CHHHHHHHhCchhccCCceEEEEccCCC
Confidence 9999999999998888877765432 12378999999999997642 22333222111 1235799999999
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 028654 162 GFNVEAAFECIAKNALKN 179 (206)
Q Consensus 162 ~~~i~~l~~~i~~~~~~~ 179 (206)
|.|++++|++|.+.+.++
T Consensus 162 g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 162 GEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp CTTHHHHHHHHHHTC---
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999877553
No 92
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=1.4e-28 Score=173.29 Aligned_cols=168 Identities=36% Similarity=0.671 Sum_probs=141.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+..++|+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+......++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 34689999999999999999999999887777788877888888889998899999999999998888888889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|+++..++..+..|+..+..... .+.|+++|+||+|+... +....++...++...+ +.++++|++++.|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~i~~v~nK~Dl~~~--~~~~~~~a~~l~~~~~-~~~~d~Sal~~~~i 155 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL--RAVPTDEARAFAEKNN-LSFIETSALDSTNV 155 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEECcccccc--cCcCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence 99999999888888888877655422 26799999999999754 4455667777877776 78999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 028654 166 EAAFECIAKNALKNE 180 (206)
Q Consensus 166 ~~l~~~i~~~~~~~~ 180 (206)
++++++|.+.+.+..
T Consensus 156 ~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 156 EEAFKNILTEIYRIV 170 (199)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887653
No 93
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=9.4e-30 Score=177.91 Aligned_cols=163 Identities=17% Similarity=0.282 Sum_probs=125.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+..++|+++|++|+|||||++++.++.+.. +.++.+ .....+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 457999999999999999999998877643 445544 3334444543 78899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH-H---cCCCcEEEeeccC
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-S---KGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~s~~~ 161 (206)
+|+|+++++++..+..|+..+.... ...+.|+++|+||+|+.... ..+++..... . ....+++++||++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDED---ELRKSLLLIFANKQDLPDAA----SEAEIAEQLGVSSIMNRTWTIVKSSSKT 167 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCS---TTTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhh---hcCCCeEEEEEECCCCcCCC----CHHHHHHHhChhhccCCceEEEEccCCC
Confidence 9999999999988888877765432 22378999999999997642 1222222111 1 1135799999999
Q ss_pred CCCHHHHHHHHHHHHhhcC
Q 028654 162 GFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 162 ~~~i~~l~~~i~~~~~~~~ 180 (206)
+.|+++++++|.+.+.++.
T Consensus 168 ~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 168 GDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp CTTHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHHhcc
Confidence 9999999999999987754
No 94
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=6.1e-30 Score=177.73 Aligned_cols=159 Identities=19% Similarity=0.281 Sum_probs=122.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
....++|+++|.+|+|||||+++|.+..+ ..+.++.+... ..+.+.+ ..+.+|||||++.+...+..+++.+|++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 92 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFV 92 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 34578999999999999999999999887 44455554433 3444554 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeecc
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAK 160 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~ 160 (206)
++|+|+++++++..+..|+..+..... ..+.|+++|+||+|+... ...+++...... ...++++++||+
T Consensus 93 i~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 165 (181)
T 2h17_A 93 IVVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKEC----MTVAEISQFLKLTSIKDHQWHIQACCAL 165 (181)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC----CCHHHHHHHTTGGGCCSSCEEEEECBTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChh---hCCCeEEEEEECCCcccC----CCHHHHHHHhCcccccCCceEEEEccCC
Confidence 999999999999998888877765321 127899999999999753 223333333211 123589999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028654 161 EGFNVEAAFECIAKN 175 (206)
Q Consensus 161 ~~~~i~~l~~~i~~~ 175 (206)
++.|++++|++|.+.
T Consensus 166 ~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 166 TGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTBTHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHhh
Confidence 999999999999764
No 95
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=4.1e-30 Score=178.76 Aligned_cols=162 Identities=19% Similarity=0.326 Sum_probs=122.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+..++|+++|++|+|||||++++.++.+ ..+.++.+.. ...+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999998766 4445555433 34445554 78999999999999998999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc----CCCcEEEeeccC
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----GNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~ 161 (206)
+|+|++++.++..+..|+..+.... ...+.|+++|+||+|+.+. ...+++....... ...+++++||++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 163 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEE---ELQDAALLVFANKQDQPGA----LSASEVSKELNLVELKDRSWSIVASSAIK 163 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSS---TTSSCEEEEEEECTTSTTC----CCHHHHHHHTTTTTCCSSCEEEEEEBGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHcCh---hhCCCeEEEEEECCCCCCC----CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence 9999999999998888887775432 1237899999999999754 2233333332211 124799999999
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 028654 162 GFNVEAAFECIAKNALKN 179 (206)
Q Consensus 162 ~~~i~~l~~~i~~~~~~~ 179 (206)
+.|+++++++|.+.+.++
T Consensus 164 ~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 164 GEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhc
Confidence 999999999999988764
No 96
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=1e-28 Score=186.88 Aligned_cols=168 Identities=24% Similarity=0.470 Sum_probs=141.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|.+|+|||||++++.+..+...+.++++..+ ...+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3468999999999999999999998888777667665444 556677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcE
Q 028654 86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPY 154 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 154 (206)
+|+|++++.++..+. .|+..+..... +.|+++|+||+|+.... .+.+..++...++...+..++
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 306 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 306 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCC-----CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEE
Confidence 999999999998886 68777766543 77999999999986531 145667788888888875599
Q ss_pred EEeeccCCCCHHHHHHHHHHHHhhc
Q 028654 155 FETSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
+++||++|.|++++|++|.+.+++.
T Consensus 307 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 307 LECSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred EEecCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999999988753
No 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=5.7e-30 Score=178.36 Aligned_cols=166 Identities=27% Similarity=0.415 Sum_probs=119.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC--CCCCCcccccceeeEEEEEEe---CCeEEEEEEeeCCCccccccccccceecCc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 82 (206)
.++|+++|++|+|||||+++|.+. .+...+.++.+.++....+.+ .+..+.+.+|||+|++.+......++..++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 444555667666665554433 235678999999999999888888899999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceec---HHHHHHHHHHcCCCc----E
Q 028654 83 CCVLVYDVNVM-KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS---EKKAKAWCASKGNIP----Y 154 (206)
Q Consensus 83 ~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~----~ 154 (206)
++++|+|++++ .++..+..|+..+..... +.|+++|+||+|+... +... .+....++...+ .+ +
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~ 153 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-----SSPVILVGTHLDVSDE--KQRKACMSKITKELLNKRG-FPAIRDY 153 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-----TCEEEEEEECGGGCCH--HHHHHHHHHHHHHTTTCTT-SCEEEEE
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-----CCcEEEEEECCCcccc--hhhHHHHHHHHHHHHHhcC-Ccchhhe
Confidence 99999999987 578888999988876532 6799999999999753 2211 223334443344 44 9
Q ss_pred EEeeccCCC-CHHHHHHHHHHHHhhcCC
Q 028654 155 FETSAKEGF-NVEAAFECIAKNALKNEP 181 (206)
Q Consensus 155 ~~~s~~~~~-~i~~l~~~i~~~~~~~~~ 181 (206)
+++||+++. +++++++.|.+.+.+.+.
T Consensus 154 ~~~Sa~~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 154 HFVNATEESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp EECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred EEEecccCchhHHHHHHHHHHHHhcccc
Confidence 999999997 999999999998887554
No 98
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.96 E-value=7.2e-28 Score=168.66 Aligned_cols=164 Identities=38% Similarity=0.707 Sum_probs=141.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+..++|+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..++..+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 45789999999999999999999999888788888888888888889998889999999999988888888888999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
+|+|.++..+++.+..|+..+..... .+.|+++++||+|+.+. +....+....++...+ +.++++|++++.++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~i~~v~nK~Dl~~~--~~~~~~~a~~l~~~~~-~~~ld~Sald~~~v 179 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL--RAVPTDEARAFAEKNG-LSFIETSALDSTNV 179 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999888888888877655422 26799999999999753 3455677778887776 78999999999999
Q ss_pred HHHHHHHHHHH
Q 028654 166 EAAFECIAKNA 176 (206)
Q Consensus 166 ~~l~~~i~~~~ 176 (206)
+++++.|.+.+
T Consensus 180 ~~l~~~l~~~i 190 (191)
T 1oix_A 180 EAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 99
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=2.8e-28 Score=168.65 Aligned_cols=163 Identities=20% Similarity=0.170 Sum_probs=122.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v 84 (206)
....++|+++|.+|+|||||+++|.+..+...+.++.+.+.....+.+.+ ..+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 45678999999999999999999999888776666666666666666666 4567999999999999998999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcC--------CCcEEE
Q 028654 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG--------NIPYFE 156 (206)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 156 (206)
++|+|+++........ ++..+.. .+.|+++|+||+|+... ..+.......... ..++++
T Consensus 83 i~v~d~~~~~~~~~~~-~l~~~~~-------~~~p~ilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVE-AINHAKA-------ANVPIIVAINKMDKPEA-----NPDRVMQELMEYNLVPEEWGGDTIFCK 149 (178)
T ss_dssp EEEEETTCCCCHHHHH-HHHHHGG-------GSCCEEEEEETTTSSCS-----CHHHHHHHHTTTTCCBTTTTSSEEEEE
T ss_pred EEEEECCCCCcHHHHH-HHHHHHh-------CCCCEEEEEECccCCcC-----CHHHHHHHHHhcCcChhHcCCcccEEE
Confidence 9999998843322221 1122211 26799999999999753 1222222222211 147999
Q ss_pred eeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654 157 TSAKEGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 157 ~s~~~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
+||+++.|++++|++|.+.+......
T Consensus 150 ~Sa~~~~gv~~l~~~l~~~~~~~~~~ 175 (178)
T 2lkc_A 150 LSAKTKEGLDHLLEMILLVSEMEELK 175 (178)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred EecCCCCCHHHHHHHHHHhhhhhccc
Confidence 99999999999999999988776554
No 100
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=3.8e-29 Score=175.86 Aligned_cols=163 Identities=17% Similarity=0.247 Sum_probs=119.0
Q ss_pred ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEE--EEEEe-CCeEEEEEEeeCCCcccccccc---ccc
Q 028654 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLT--KEVQF-EDRLFTLQIWDTAGQERFQSLG---VAF 77 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~D~~G~~~~~~~~---~~~ 77 (206)
.....+||+++|.+|+|||||++.+.+.. ... ++.+..... ....+ .+..+.+.+|||||++.+.... ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKM-SPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCC-CGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcC-CCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 34568999999999999999999887753 322 233322222 22223 2556789999999999987776 789
Q ss_pred eecCcEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC-----cceecHHHHHHHHH---
Q 028654 78 YRGADCCVLVYDVNVM--KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN-----SRVVSEKKAKAWCA--- 147 (206)
Q Consensus 78 ~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-----~~~~~~~~~~~~~~--- 147 (206)
++.+|++|+|||+++. +++..+..|+..+..... +.|+++|+||+|+.... .+.+..+....++.
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP-----DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT-----TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC-----CCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 9999999999999987 666667777776644332 78999999999987532 13344455566666
Q ss_pred -HcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654 148 -SKGNIPYFETSAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 148 -~~~~~~~~~~s~~~~~~i~~l~~~i~~~~ 176 (206)
..+ .+++++||++ .|++++|+.|++.+
T Consensus 168 ~~~~-~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 168 EKLH-LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTSC-EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hcCC-cceEEEEech-hhHHHHHHHHHHHh
Confidence 333 7899999999 99999999999875
No 101
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=2.5e-31 Score=188.15 Aligned_cols=165 Identities=25% Similarity=0.486 Sum_probs=132.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4578999999999999999999998877666666654333 445556677788899999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc----------ceecHHHHHHHHHHcCCCcE
Q 028654 86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPY 154 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 154 (206)
+|+|++++.++..+. .|+..+..... +.|+++|+||+|+..... +....++...++...+..++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-----~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 181 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 181 (204)
Confidence 999999999988875 77776654332 679999999999975421 13445566667666664489
Q ss_pred EEeeccCCCCHHHHHHHHHHHH
Q 028654 155 FETSAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~~ 176 (206)
+++||++|.|++++|++|.+.+
T Consensus 182 ~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 182 LECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999999998865
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=2.1e-28 Score=174.31 Aligned_cols=169 Identities=20% Similarity=0.268 Sum_probs=115.0
Q ss_pred ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCe-EEEEEEeeCCCcccccc-ccccceecC
Q 028654 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR-LFTLQIWDTAGQERFQS-LGVAFYRGA 81 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~ 81 (206)
++...++|+++|++|+|||||+++|.+..+...+.+ ++..... +.+.+. .+.+.+|||||++.+.. .+..+++.+
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 79 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSA 79 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhC
Confidence 345679999999999999999999999887655543 3333332 555543 57899999999998887 677889999
Q ss_pred cEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH-------------
Q 028654 82 DCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA------------- 147 (206)
Q Consensus 82 d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~------------- 147 (206)
|++++|+|+++.. ++.....|+..+..... ....+.|+++|+||+|+..........+.+.....
T Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~ 158 (214)
T 2fh5_B 80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSM-ALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL 158 (214)
T ss_dssp EEEEEEEETTTHHHHHHHHHHHHHHHHHHHH-TSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------
T ss_pred CEEEEEEECCCcCHHHHHHHHHHHHHHhhhh-hcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccc
Confidence 9999999999843 35555444444332211 11226799999999999865333222333332222
Q ss_pred --------HcC-------------CCcEEEeeccCC------CCHHHHHHHHHHHH
Q 028654 148 --------SKG-------------NIPYFETSAKEG------FNVEAAFECIAKNA 176 (206)
Q Consensus 148 --------~~~-------------~~~~~~~s~~~~------~~i~~l~~~i~~~~ 176 (206)
..+ ..+|+++||++| .|++++|++|.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 011 467999999999 99999999998753
No 103
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=184.83 Aligned_cols=161 Identities=16% Similarity=0.302 Sum_probs=118.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
..++|+|+|.+|+|||||+++|.+..+... .++.+.. ...+...+ +.+.||||||++.+......+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 457999999999999999999998876533 3444333 33344444 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeeccCC
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEG 162 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~ 162 (206)
|||++++.++..+..|+..+.... ...++|+++|+||+|+.... ..+++...... ....+++++||+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilV~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~vSAk~g 311 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAED---ELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRHRNWYIQATCATSG 311 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC----CHHHHHHHHTCTTCCSSCEEEEECBTTTT
T ss_pred EEECCchHHHHHHHHHHHHHHhhh---ccCCCeEEEEEECccCCccc----CHHHHHHHhchhhhhcCCCEEEEEECCCC
Confidence 999999999998887777665432 22378999999999998642 22222222111 12357999999999
Q ss_pred CCHHHHHHHHHHHHhhc
Q 028654 163 FNVEAAFECIAKNALKN 179 (206)
Q Consensus 163 ~~i~~l~~~i~~~~~~~ 179 (206)
.|++++|++|.+.+.++
T Consensus 312 ~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 312 DGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp BTHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 99999999999988654
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=5.6e-28 Score=165.39 Aligned_cols=154 Identities=12% Similarity=0.159 Sum_probs=111.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc------cccccee-
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS------LGVAFYR- 79 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~- 79 (206)
..++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+.+ ..+.+|||||+..+.. ....++.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 357999999999999999999998776555556555555555666655 5789999999877642 2244443
Q ss_pred -cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654 80 -GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (206)
Q Consensus 80 -~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (206)
.+|++++|+|+++.+. ...|+..+... +.|+++|+||+|+.... .... +.+.++...+ .+++++|
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~~-------~~p~ilv~nK~Dl~~~~--~~~~-~~~~~~~~~~-~~~~~~S 145 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NLYLTLQLMEM-------GANLLLALNKMDLAKSL--GIEI-DVDKLEKILG-VKVVPLS 145 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HHHHHHHHHHT-------TCCEEEEEECHHHHHHT--TCCC-CHHHHHHHHT-SCEEECB
T ss_pred CCCCEEEEEecCCchhH---hHHHHHHHHhc-------CCCEEEEEEchHhcccc--Chhh-HHHHHHHHhC-CCEEEEE
Confidence 7999999999987543 34566555431 67999999999986431 1111 2455666666 7899999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q 028654 159 AKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 159 ~~~~~~i~~l~~~i~~~~ 176 (206)
|++|.|++++|++|.+.+
T Consensus 146 A~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 146 AAKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGGTBSHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 999999999999998865
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=9e-28 Score=179.56 Aligned_cols=167 Identities=19% Similarity=0.256 Sum_probs=126.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc-----ccccccceecC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-----QSLGVAFYRGA 81 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~ 81 (206)
.+||+++|.+|+|||||+++++++... ....+..+.......+.+.+ .+.+.+|||||++.+ ......+++.+
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 579999999999999999999887332 22223333344444444544 578999999999888 67778888999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce----ecHHHHHHHHHHcC--CCcEE
Q 028654 82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV----VSEKKAKAWCASKG--NIPYF 155 (206)
Q Consensus 82 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~----~~~~~~~~~~~~~~--~~~~~ 155 (206)
|++|+|+|++++++++.+..|...+...... .++.|+++|+||+|+.....+. ...+++..++...+ ..+++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~ 159 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF 159 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999999999999999887775544433211 1278999999999998643344 55577788888876 38999
Q ss_pred EeeccCCCCHHHHHHHHHHHHhh
Q 028654 156 ETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 156 ~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
++||++ .++.++|..+++.+..
T Consensus 160 ~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EeeecC-ChHHHHHHHHHHHHcC
Confidence 999999 8999999998886654
No 106
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.7e-28 Score=179.04 Aligned_cols=165 Identities=24% Similarity=0.302 Sum_probs=119.2
Q ss_pred ceeeEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCccccc-ceeeEEEE--------------EEeCCeEEE
Q 028654 6 RMLLKVIILGDS---------GVGKTSLMNQYVN---RKFSNQYKATI-GADFLTKE--------------VQFEDRLFT 58 (206)
Q Consensus 6 ~~~~~i~viG~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~~~ 58 (206)
+..+||+++|.+ |+|||||+++|.+ ..+...+.+++ +.++.... ..+++..+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 457999999999 9999999999998 44555555554 33222111 113456788
Q ss_pred EEEee-----------------------CCCcccccccccccee---------------------cCcEEEEEEECCCh-
Q 028654 59 LQIWD-----------------------TAGQERFQSLGVAFYR---------------------GADCCVLVYDVNVM- 93 (206)
Q Consensus 59 ~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~vi~v~d~~~~- 93 (206)
+.+|| ++|++.+...+..++. ++|++|+|||++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 5566666666666666 79999999999998
Q ss_pred -hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHH
Q 028654 94 -KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172 (206)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i 172 (206)
.+++.+..|+..+...... .+.|+++|+||+|+... +. .++...++......+++++||+++.|++++|++|
T Consensus 177 ~~s~~~~~~~l~~i~~~~~~---~~~piilV~NK~Dl~~~--~~--v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 177 NRNFDDQLKFVSNLYNQLAK---TKKPIVVVLTKCDEGVE--RY--IRDAHTFALSKKNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp --CHHHHHHHHHHHHHHHHH---TTCCEEEEEECGGGBCH--HH--HHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcc---CCCCEEEEEEccccccc--HH--HHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence 8999999999888765211 16799999999999643 22 2566667766444899999999999999999999
Q ss_pred HHHHh
Q 028654 173 AKNAL 177 (206)
Q Consensus 173 ~~~~~ 177 (206)
.+.+.
T Consensus 250 ~~~l~ 254 (255)
T 3c5h_A 250 VQLID 254 (255)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98764
No 107
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=4.7e-27 Score=168.92 Aligned_cols=166 Identities=18% Similarity=0.076 Sum_probs=113.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc---------ccccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ---------SLGVA 76 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~ 76 (206)
...++|+|+|.+|+|||||+++|.+..+.....+..+...........+ ..+.+|||||..... .....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4568999999999999999999998876533344444445444444444 678999999973211 11223
Q ss_pred ceecCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHH---HHHHHHHHcC-
Q 028654 77 FYRGADCCVLVYDVNVMKSFD--NLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK---KAKAWCASKG- 150 (206)
Q Consensus 77 ~~~~~d~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~---~~~~~~~~~~- 150 (206)
++..+|++++|+|++++.++. ....|+..+.... .+.|+++|+||+|+... .....+ ....++...+
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~ 177 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-----SNKSIVIGFNKIDKCNM--DSLSIDNKLLIKQILDNVKN 177 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC------CCCEEEEEECGGGCC----CCCHHHHHHHHHHHHHCCS
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-----cCCcEEEEEeCcccCCc--hhhHHHHHHHHHHHHHhcCC
Confidence 457789999999999877654 2234555554321 26799999999999764 233222 4445555442
Q ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654 151 NIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 151 ~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
..+++++||++|.|++++|++|.+.+.+..
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 178 PIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 268999999999999999999999887654
No 108
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=1.1e-27 Score=168.06 Aligned_cols=161 Identities=19% Similarity=0.183 Sum_probs=107.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCC----------ccccccccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV 75 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~ 75 (206)
...++|+++|.+|+|||||+++|.+..+.....++.+.+........++ .+.+||||| ++.+.....
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 3568999999999999999999998875544444444433333334443 588999999 666666677
Q ss_pred cceecC---cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCC
Q 028654 76 AFYRGA---DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI 152 (206)
Q Consensus 76 ~~~~~~---d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 152 (206)
.++..+ |++++|+|+++..+..... +...+.. .+.|+++|+||+|+..........+++..........
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence 777666 9999999999876665532 2222221 2779999999999986422222223333322222347
Q ss_pred cEEEeeccCCCCHHHHHHHHHHHHh
Q 028654 153 PYFETSAKEGFNVEAAFECIAKNAL 177 (206)
Q Consensus 153 ~~~~~s~~~~~~i~~l~~~i~~~~~ 177 (206)
+++++||+++.|+++++++|.+.+.
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ceEEEEccCCCCHHHHHHHHHHHhc
Confidence 8999999999999999999998764
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=1.8e-27 Score=189.05 Aligned_cols=165 Identities=15% Similarity=0.266 Sum_probs=124.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi 85 (206)
+..++|+++|.+|+|||||+++|.+..+. ...+|.+.. ...+.+.+ +.+.+|||||++.+...+..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~--~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFN--VETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE--EEEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCcccee--EEEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 45789999999999999999999988754 334454433 33444444 68899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeeccC
Q 028654 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE 161 (206)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~ 161 (206)
+|||+++++++..+..|+..+..... ..++|+++|+||+|+.... ..+++...... ....+++++||++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 467 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDRE---MRDAIILIFANKQDLPDAM----KPHEIQEKLGLTRIRDRNWYVQPSCATS 467 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGG---GTTCEEEEEEECCSSSSCC----CHHHHHHHTTCTTCCSSCEEEEECBTTT
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhh---cCCCcEEEEEECCCCCcCC----CHHHHHHHhchhhhhcCCeEEEEEECCC
Confidence 99999999999999888887755322 2378999999999997542 22333222111 1124699999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCC
Q 028654 162 GFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 162 ~~~i~~l~~~i~~~~~~~~~~ 182 (206)
|.|++++|++|.+.+.+..+.
T Consensus 468 g~gi~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 468 GDGLYEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp TBTHHHHHHHHHHHCC-----
T ss_pred CCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999987665543
No 110
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=3e-27 Score=165.74 Aligned_cols=159 Identities=19% Similarity=0.265 Sum_probs=115.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCC----------ccccccccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV 75 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~ 75 (206)
...++|+++|.+|+|||||+++|.+..+. ...++.+.+.......... .+.+||||| ++.+.....
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence 34689999999999999999999988733 2233333333333333332 577999999 555666666
Q ss_pred cceecC---cEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcC
Q 028654 76 AFYRGA---DCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG 150 (206)
Q Consensus 76 ~~~~~~---d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 150 (206)
.++..+ |++++|+|+++...... +..|+... +.|+++|+||+|+..........+++..++...+
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~----------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL----------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc----------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 666655 99999999987543322 23333322 6799999999999866555566667777777766
Q ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654 151 NIPYFETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 151 ~~~~~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
..+++++||+++.|++++|++|.+.+.+
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 6899999999999999999999998754
No 111
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=2.5e-26 Score=171.75 Aligned_cols=167 Identities=20% Similarity=0.124 Sum_probs=127.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc----------ccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----------SLG 74 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~ 74 (206)
.+.-.|+++|.+|+|||||+|+|++..+.. ...+.++........... ...++.||||||..... ...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 456789999999999999999999988752 333444444444444443 13688999999975543 455
Q ss_pred ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc-CCCc
Q 028654 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK-GNIP 153 (206)
Q Consensus 75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~ 153 (206)
..++..+|++++|+|+++..+......|+..+... +.|+++|+||+|+... .....+....+.... ...+
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-------~~pvilV~NK~Dl~~~--~~~~~~~~~~l~~~~~~~~~ 157 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-------NKPVIVVINKIDKIGP--AKNVLPLIDEIHKKHPELTE 157 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-------CCCEEEEEECGGGSSS--GGGGHHHHHHHHHHCTTCCC
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc-------CCCEEEEEECccCCCC--HHHHHHHHHHHHHhccCCCe
Confidence 66788999999999999887777766666665541 6799999999999743 445566677777766 4578
Q ss_pred EEEeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654 154 YFETSAKEGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 154 ~~~~s~~~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
++++||++|.|+++++++|.+.+.+.++.
T Consensus 158 i~~vSA~~g~gv~~L~~~l~~~l~~~~~~ 186 (308)
T 3iev_A 158 IVPISALKGANLDELVKTILKYLPEGEPL 186 (308)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSCBCCCS
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCccCCCC
Confidence 99999999999999999999999876654
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=7.3e-27 Score=163.00 Aligned_cols=160 Identities=12% Similarity=0.140 Sum_probs=120.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc------cccccce
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFY 78 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~ 78 (206)
.+..++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+.+ ..+.+|||||+..+. .....++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence 34678999999999999999999998766555566666666666666665 678999999988764 2334444
Q ss_pred e--cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654 79 R--GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (206)
Q Consensus 79 ~--~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
. .+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+....... +....++...+ .++++
T Consensus 82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~~~~ 147 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA---LERNLYLTLQLME-------MGANLLLALNKMDLAKSLGIE---IDVDKLEKILG-VKVVP 147 (188)
T ss_dssp HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT-------TTCCEEEEEECHHHHHHTTCC---CCHHHHHHHHT-SCEEE
T ss_pred hccCCCEEEEEecchh---HHHHHHHHHHHHh-------cCCCEEEEEEhhhccccccch---HHHHHHHHHhC-CCeEE
Confidence 3 4899999999985 3445566666543 267999999999986431111 34555666666 78999
Q ss_pred eeccCCCCHHHHHHHHHHHHhhcC
Q 028654 157 TSAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 157 ~s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
+||+++.|++++|++|.+.+.+..
T Consensus 148 ~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 148 LSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp CBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred EEecCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999887655
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=4.1e-27 Score=164.45 Aligned_cols=159 Identities=21% Similarity=0.230 Sum_probs=112.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCC-----------ccccccccccc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------QERFQSLGVAF 77 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~ 77 (206)
++|+++|.+|+|||||+++|.+..+...+.++.+....... +. .+.+||||| ++.+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~--~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE--WK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEE--ET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEe--cC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999998877766666554443332 22 678999999 56666666666
Q ss_pred eec-CcEEEEEEECCChhhHHHH-HHHHHH--------HHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH
Q 028654 78 YRG-ADCCVLVYDVNVMKSFDNL-NNWREE--------FLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA 147 (206)
Q Consensus 78 ~~~-~d~vi~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~ 147 (206)
++. ++++++++++.+..++..+ ..|... +...... .+.|+++|+||+|+... . .+..+.++.
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~---~~~~~~~~~ 147 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKN--V---QEVINFLAE 147 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSC--H---HHHHHHHHH
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh---cCCceEEEeehHhccCc--H---HHHHHHHHH
Confidence 665 6655555555555566554 455432 2221111 26799999999999764 2 456667776
Q ss_pred HcCC------CcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 148 SKGN------IPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 148 ~~~~------~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
..+. .+++++||++|.|++++|++|.+.+.+...
T Consensus 148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 6652 247999999999999999999999887654
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=1.5e-26 Score=157.34 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc-------cccccccceec
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRG 80 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 80 (206)
.+|+++|++|+|||||++++.+..+. ....++.+.+.....+...+ ..+.+|||||... +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999988754 33344445555566666666 3788999999876 33444567789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (206)
Q Consensus 81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (206)
+|++++|+|+++..+... .++...... .+.|+++|+||+|+.... ++...++ ..+..+++++||+
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~------~~~p~ilv~nK~Dl~~~~------~~~~~~~-~~~~~~~~~~Sa~ 144 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR------KGKPVILVATKVDDPKHE------LYLGPLY-GLGFGDPIPTSSE 144 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH------HTCCEEEEEECCCSGGGG------GGCGGGG-GGSSCSCEECBTT
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh------cCCCEEEEEECcccccch------HhHHHHH-hCCCCCeEEEecc
Confidence 999999999997543322 222222222 167999999999997531 2233333 4453489999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028654 161 EGFNVEAAFECIAKNA 176 (206)
Q Consensus 161 ~~~~i~~l~~~i~~~~ 176 (206)
++.|++++|++|.+.+
T Consensus 145 ~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 145 HARGLEELLEAIWERL 160 (161)
T ss_dssp TTBSHHHHHHHHHHHC
T ss_pred cCCChHHHHHHHHHhC
Confidence 9999999999998865
No 115
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=1.7e-26 Score=159.12 Aligned_cols=155 Identities=23% Similarity=0.292 Sum_probs=112.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc--------cccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF 77 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 77 (206)
...+|+++|++|+|||||+++|.+..+. ....++++.++....+.+++ ..+.+|||||...+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3579999999999999999999987643 33345555666667777776 35789999997653221 1235
Q ss_pred eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
++.+|++++|+|+++..++.. ..|+..+..... .++|+++|+||+|+.+...... .....+++++
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~----~~~p~ilv~NK~Dl~~~~~~~~----------~~~~~~~~~~ 145 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLP----AKLPITVVRNKADITGETLGMS----------EVNGHALIRL 145 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSC----TTCCEEEEEECHHHHCCCCEEE----------EETTEEEEEC
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcc----cCCCEEEEEECccCCcchhhhh----------hccCCceEEE
Confidence 788999999999998777653 466666655432 2689999999999864311110 1123689999
Q ss_pred eccCCCCHHHHHHHHHHHHhh
Q 028654 158 SAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~~~ 178 (206)
||+++.|++++|++|.+.+..
T Consensus 146 SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 146 SARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp CTTTCTTHHHHHHHHHHHC--
T ss_pred eCCCCCCHHHHHHHHHHHhhh
Confidence 999999999999999987644
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=5.2e-26 Score=165.93 Aligned_cols=156 Identities=21% Similarity=0.169 Sum_probs=117.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccc------ccce--
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG------VAFY-- 78 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~-- 78 (206)
..++|+++|.+|+|||||+|+|++..+.....++.+.......+...+ ..+.+|||||...+.... ..++
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 468999999999999999999998876555556666655555555544 688999999987765422 3444
Q ss_pred ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654 79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (206)
Q Consensus 79 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (206)
..+|++++|+|+++.+.. ..|...+... +.|+++|+||+|+........ +...++...+ ++++++|
T Consensus 82 ~~~d~ii~V~D~t~~~~~---~~~~~~l~~~-------~~pvilv~NK~Dl~~~~~i~~---~~~~l~~~lg-~~vi~~S 147 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQS---LYLLLEILEM-------EKKVILAMTAIDEAKKTGMKI---DRYELQKHLG-IPVVFTS 147 (258)
T ss_dssp SCCSEEEEEEETTSCHHH---HHHHHHHHTT-------TCCEEEEEECHHHHHHTTCCB---CHHHHHHHHC-SCEEECC
T ss_pred cCCCEEEEEeCCCchhhH---HHHHHHHHhc-------CCCEEEEEECcCCCCccchHH---HHHHHHHHcC-CCEEEEE
Confidence 579999999999986543 2344444331 689999999999864322222 3455666666 8999999
Q ss_pred ccCCCCHHHHHHHHHHHHhh
Q 028654 159 AKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 159 ~~~~~~i~~l~~~i~~~~~~ 178 (206)
|++|.|++++|++|.+.+..
T Consensus 148 A~~g~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQK 167 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHHS
T ss_pred eeCCcCHHHHHHHHHHHhhc
Confidence 99999999999999997653
No 117
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.94 E-value=1.3e-26 Score=168.91 Aligned_cols=151 Identities=17% Similarity=0.201 Sum_probs=114.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc----------ccccce
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----------LGVAFY 78 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~ 78 (206)
.+|+++|.+|||||||+|+|++........++.+.+.....+.+.+ ..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999999876666667777777777777776 3789999999876653 334455
Q ss_pred --ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654 79 --RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (206)
Q Consensus 79 --~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
..+|++++|+|+++.+....+.. .+.. .+.|+++|+||+|+......... ...+....+ +++++
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~---~l~~-------~~~pvilv~NK~Dl~~~~~~~~~---~~~l~~~lg-~~vi~ 145 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTS---QLFE-------LGKPVVVALNMMDIAEHRGISID---TEKLESLLG-CSVIP 145 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHH---HHTT-------SCSCEEEEEECHHHHHHTTCEEC---HHHHHHHHC-SCEEE
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHH---HHHH-------cCCCEEEEEEChhcCCcCCcHHH---HHHHHHHcC-CCEEE
Confidence 78999999999998654433322 2221 17899999999998754323333 334555556 89999
Q ss_pred eeccCCCCHHHHHHHHHHH
Q 028654 157 TSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 157 ~s~~~~~~i~~l~~~i~~~ 175 (206)
+||++|.|+++++++|.+.
T Consensus 146 ~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 146 IQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CBGGGTBSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999886
No 118
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=2.6e-27 Score=175.73 Aligned_cols=162 Identities=16% Similarity=0.174 Sum_probs=117.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC---CcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc---ccccceecCcE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---LGVAFYRGADC 83 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~ 83 (206)
||+++|..|+|||||++++.++.... ...+|.+.+... + + ..+.+++|||+|++++.. ....+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887664332 245566555532 2 2 347899999999999964 35788999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc-----ceecHHHHHHHHHHc---CCCc
Q 028654 84 CVLVYDVNVM--KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS-----RVVSEKKAKAWCASK---GNIP 153 (206)
Q Consensus 84 vi~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~---~~~~ 153 (206)
+|+|||++++ +....+..|+..+.... ++.|+++++||+|+..... +++..++.++++... .++.
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-----~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~ 150 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-----PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVS 150 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-----TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEE
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-----CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCce
Confidence 9999999987 33333334444443332 2789999999999986532 345555666666641 2488
Q ss_pred EEEeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654 154 YFETSAKEGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 154 ~~~~s~~~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
|++|||++ .++.++|..|++.++++.+.
T Consensus 151 f~eTSAkd-~nV~eAFs~iv~~li~~~~~ 178 (331)
T 3r7w_B 151 FYLTSIFD-HSIYEAFSRIVQKLIPELSF 178 (331)
T ss_dssp EECCCSSS-SHHHHHHHHHHTTSSTTHHH
T ss_pred EEEeccCC-CcHHHHHHHHHHHHHhhHHH
Confidence 99999998 58999999999988765443
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=5.1e-27 Score=187.71 Aligned_cols=166 Identities=23% Similarity=0.336 Sum_probs=121.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEE------Ee--CCeEEEEEEeeCCCcccccccccc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEV------QF--EDRLFTLQIWDTAGQERFQSLGVA 76 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~i~D~~G~~~~~~~~~~ 76 (206)
....+||+++|.+|+|||||++++.+..+.....++.+..+..... .+ .+..+.+.+|||||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 3457999999999999999999999998877777777766654421 11 233578999999999999998999
Q ss_pred ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654 77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
+++.+|++++|+|+++. +....|+..+..... +.|+++|+||+|+... .....+++..++...+ .++++
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-----~~pvilV~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~ 186 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-----KSPVIVVMNKIDENPS--YNIEQKKINERFPAIE-NRFHR 186 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-----SCCEEEEECCTTTCTT--CCCCHHHHHHHCGGGT-TCEEE
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-----CCCEEEEEECCCcccc--cccCHHHHHHHHHhcC-CceEE
Confidence 99999999999999865 455778888877643 6799999999999865 4455677777766666 78999
Q ss_pred eeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 157 TSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 157 ~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
+||+++.|++++++.|.+.+.+...
T Consensus 187 vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 187 ISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp CCC-----CTTHHHHHHHHHTCTTS
T ss_pred EecCcccCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999887655
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.94 E-value=3.3e-27 Score=173.83 Aligned_cols=157 Identities=19% Similarity=0.216 Sum_probs=116.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc----------ccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------GVA 76 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~ 76 (206)
+.++|+++|.+|+|||||+|+|++..+.....++.+.+.....+.+.+ ..+.+|||||...+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 458999999999999999999999876656667777777677776665 46778999998776521 122
Q ss_pred ce--ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcE
Q 028654 77 FY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY 154 (206)
Q Consensus 77 ~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
++ ..+|++++|+|+++.+....+..+ +... +.|+++|+||+|+......... ...+....+ .++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~-------~~p~ivv~NK~Dl~~~~~~~~~---~~~l~~~lg-~~~ 145 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQ---LLEL-------GIPCIVALNMLDIAEKQNIRIE---IDALSARLG-CPV 145 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH-------TCCEEEEEECHHHHHHTTEEEC---HHHHHHHHT-SCE
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHH---HHhc-------CCCEEEEEECccchhhhhHHHH---HHHHHHhcC-CCE
Confidence 22 689999999999986544433333 3322 6799999999998654222222 344555566 899
Q ss_pred EEeeccCCCCHHHHHHHHHHHHhhc
Q 028654 155 FETSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
+++||++|.|+++++++|.+.+...
T Consensus 146 i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 146 IPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp EECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999998876654
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=2.1e-26 Score=164.92 Aligned_cols=166 Identities=14% Similarity=0.054 Sum_probs=108.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccccceeeEEEEEEeC-CeEEEEEEeeCCCc----------ccccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF--SNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQ----------ERFQS 72 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~~~ 72 (206)
...++|+|+|.+|+|||||+|+|++... .....+..+..... ..+. .....+.||||||. +.+..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINY--FSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEE--EEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEE--EEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 3468999999999999999999998863 22223333333322 2232 33357889999994 33344
Q ss_pred ccccceec---CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH-
Q 028654 73 LGVAFYRG---ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS- 148 (206)
Q Consensus 73 ~~~~~~~~---~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~- 148 (206)
....++.. +|++++|+|+++..+.. ...|+..+.. .+.|+++|+||+|+..........+.+......
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~ 176 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP-------TGKPIHSLLTKCDKLTRQESINALRATQKSLDAY 176 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG-------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh-------cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence 44455544 78899999998754322 2334444432 267999999999997642222223333333333
Q ss_pred -----cCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 149 -----KGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 149 -----~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
....+++++||+++.|+++++++|.+.+.....
T Consensus 177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence 245789999999999999999999998876543
No 122
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=3.8e-25 Score=164.59 Aligned_cols=163 Identities=15% Similarity=0.070 Sum_probs=113.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCccc--------ccccccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVA 76 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~ 76 (206)
....+|+++|.+|+|||||+|+|++..+.. ...+.++........... ..++.||||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 345689999999999999999999987752 333333333333333333 36889999999765 3445556
Q ss_pred ceecCcEEEEEEECCChhhHHHHHHHH-HHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEE
Q 028654 77 FYRGADCCVLVYDVNVMKSFDNLNNWR-EEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF 155 (206)
Q Consensus 77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (206)
+++.+|++++|+|+++..+.. ..|+ ..+.... .+.|+++|+||+|+.... ....+.+..+ .+..+++
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-----~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~---~~~~~~~ 150 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-----GKVPILLVGNKLDAAKYP--EEAMKAYHEL---LPEAEPR 150 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-----TTSCEEEEEECGGGCSSH--HHHHHHHHHT---STTSEEE
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-----CCCCEEEEEECcccCCch--HHHHHHHHHh---cCcCcEE
Confidence 788999999999998764433 3343 3343321 267999999999997541 1012222222 3446799
Q ss_pred EeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654 156 ETSAKEGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 156 ~~s~~~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
++||+++.|++++++.|.+.+++..+.
T Consensus 151 ~iSA~~g~gv~~l~~~l~~~l~~~~~~ 177 (301)
T 1wf3_A 151 MLSALDERQVAELKADLLALMPEGPFF 177 (301)
T ss_dssp ECCTTCHHHHHHHHHHHHTTCCBCCCS
T ss_pred EEeCCCCCCHHHHHHHHHHhcccCCCC
Confidence 999999999999999999988765544
No 123
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=1.7e-26 Score=169.33 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=111.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc------ccccccee-
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR- 79 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~- 79 (206)
..++|+++|.+|+|||||+|+|++........++.+....... +.. ...+.+|||||+..+. .....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~--~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGL--VKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEE--CTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEE--Eec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 3579999999999999999999987654444455444433333 333 4678999999988765 23344554
Q ss_pred -cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654 80 -GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (206)
Q Consensus 80 -~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (206)
.+|++++|+|+++.+.. ..|...+.. .+.|+++|+||+|+....... .....+....+ ++++++|
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~-------~~~p~ilv~NK~Dl~~~~~~~---~~~~~l~~~lg-~~vi~~S 144 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE-------TGIPVTIALNMIDVLDGQGKK---INVDKLSYHLG-VPVVATS 144 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH-------TCSCEEEEEECHHHHHHTTCC---CCHHHHHHHHT-SCEEECB
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh-------cCCCEEEEEEChhhCCcCCcH---HHHHHHHHHcC-CCEEEEE
Confidence 59999999999875443 345555543 178999999999986432112 23455556666 7999999
Q ss_pred ccCCCCHHHHHHHHHHHHhh
Q 028654 159 AKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 159 ~~~~~~i~~l~~~i~~~~~~ 178 (206)
|++|.|++++|++|.+.+..
T Consensus 145 A~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 145 ALKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp TTTTBSHHHHHHHHHHSCTT
T ss_pred ccCCCCHHHHHHHHHHHHhh
Confidence 99999999999999886543
No 124
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=2.2e-25 Score=164.09 Aligned_cols=159 Identities=19% Similarity=0.194 Sum_probs=118.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc------ccccce--
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS------LGVAFY-- 78 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~-- 78 (206)
+.++|+++|++|+|||||+|+|.+..+.....++.+.+.....+.+.+ ..+.+|||||...+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 468999999999999999999999877656667777777777777766 4588999999877665 334444
Q ss_pred ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654 79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (206)
Q Consensus 79 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (206)
..+|++++|+|+++.+ ....|...+.... ..|+++|+||+|+......... ...+....+ .+++++|
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~------~~p~ilv~NK~Dl~~~~~~~~~---~~~l~~~lg-~~~~~~S 146 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEME------VKNIILVLNKFDLLKKKGAKID---IKKMRKELG-VPVIPTN 146 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHTT------CCSEEEEEECHHHHHHHTCCCC---HHHHHHHHS-SCEEECB
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhcC------CCCEEEEEEChhcCcccccHHH---HHHHHHHcC-CcEEEEE
Confidence 6799999999998753 2233444443321 2799999999997643212222 455556666 8999999
Q ss_pred ccCCCCHHHHHHHHHHHHhhcC
Q 028654 159 AKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 159 ~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
+++|.|++++++.+.+.+....
T Consensus 147 a~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 147 AKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp GGGTBTHHHHHHHHHHHHHTCC
T ss_pred eCCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999876544
No 125
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.93 E-value=7.9e-25 Score=172.42 Aligned_cols=161 Identities=20% Similarity=0.215 Sum_probs=113.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCC-------CCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRK-------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF 77 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 77 (206)
.+..++|+++|+.++|||||+++|.+.. +..+..++.+.+.....+.+.+ ..+.+|||||++++...+...
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 3567999999999999999999999876 2233344444444334445554 688999999999998888889
Q ss_pred eecCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc---CC
Q 028654 78 YRGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK---GN 151 (206)
Q Consensus 78 ~~~~d~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~ 151 (206)
+..+|++++|+|+++ +.+.+.+ ..+. .. ++|+++|+||+|+.+........+++..+.... ..
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l----~~~~-~~------~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 162 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHM----LILD-HF------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKN 162 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHH----HHHH-HT------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGG
T ss_pred HhhCCEEEEEEecCCCccHHHHHHH----HHHH-Hc------CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccccc
Confidence 999999999999987 3333322 2221 11 678999999999986322233344555555543 24
Q ss_pred CcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654 152 IPYFETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 152 ~~~~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
.+++++||++|.|+++++++|.+.+..
T Consensus 163 ~~ii~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 163 SSIIPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence 789999999999999999999998764
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=2.1e-24 Score=169.23 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=98.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccc--------ccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------VAF 77 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 77 (206)
..++|+++|.+|+|||||+|+|.+.... ....++++.+.....+.+.+ ..+.+|||||...+.... ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 4688999999999999999999987532 44556666666666777776 578999999976655332 346
Q ss_pred eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
+..+|++++|+|++++.++..+..+... ..... +.|+++|+||+|+..... .. .+.+... +..+++++
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~-l~~l~-----~~piIvV~NK~Dl~~~~~--~~---~~~l~~~-~~~~~i~v 377 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIREL-KAAHP-----AAKFLTVANKLDRAANAD--AL---IRAIADG-TGTEVIGI 377 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHH-HHHCT-----TSEEEEEEECTTSCTTTH--HH---HHHHHHH-HTSCEEEC
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHH-HHhcC-----CCCEEEEEECcCCCCccc--hh---HHHHHhc-CCCceEEE
Confidence 7899999999999987776433232222 22222 679999999999986522 11 1233333 22689999
Q ss_pred eccCCCCHHHHHHHHHHHHh
Q 028654 158 SAKEGFNVEAAFECIAKNAL 177 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~~ 177 (206)
||+++.|+++++++|.+.+.
T Consensus 378 SAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 378 SALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp BTTTTBSHHHHHHHHTHHHH
T ss_pred EECCCCCHHHHHHHHHHHHh
Confidence 99999999999999999887
No 127
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.92 E-value=7.4e-24 Score=164.19 Aligned_cols=165 Identities=17% Similarity=0.169 Sum_probs=108.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCC---CCCCcccccce--eeEEEEEEe-------------C--C----eEEEEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGA--DFLTKEVQF-------------E--D----RLFTLQ 60 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~~~ 60 (206)
++..++|+++|+.++|||||+++|.+.. +.....+..+. .+....+.. . + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998543 22333343233 222222211 1 1 136899
Q ss_pred EeeCCCccccccccccceecCcEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM----KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV 136 (206)
Q Consensus 61 i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~ 136 (206)
||||||++.+...+...+..+|++|+|+|+++. .+.+.+.. +. ... ..|+++|+||+|+.......
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~-~l~-----~~~iivv~NK~Dl~~~~~~~ 154 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LE-ILG-----IDKIIIVQNKIDLVDEKQAE 154 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HH-HTT-----CCCEEEEEECTTSSCTTTTT
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HH-HcC-----CCeEEEEEEccCCCCHHHHH
Confidence 999999999988888888899999999999964 33333322 21 111 24799999999998754334
Q ss_pred ecHHHHHHHHHHc--CCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654 137 VSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 137 ~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
...+++..+.... ...+++++||+++.|+++++++|.+.+...
T Consensus 155 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 155 ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 4556666666542 347899999999999999999999877643
No 128
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.92 E-value=8.3e-24 Score=163.66 Aligned_cols=169 Identities=16% Similarity=0.119 Sum_probs=116.8
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEE---------EEE-------Ee---CCeEEEEEEeeCC
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLT---------KEV-------QF---EDRLFTLQIWDTA 65 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~---------~~~-------~~---~~~~~~~~i~D~~ 65 (206)
++..++|+++|++++|||||+++|++.......... ...... ... .. ......+.+||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 456799999999999999999999985432210000 000000 000 00 1123689999999
Q ss_pred CccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHH
Q 028654 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW 145 (206)
Q Consensus 66 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~ 145 (206)
|++.+...+...+..+|++++|+|+++..+......++..+.... ..|+++|+||+|+.+........+++..+
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~------~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 157 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG------VKNLIIVQNKVDVVSKEEALSQYRQIKQF 157 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT------CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC------CCCEEEEEECccccchHHHHHHHHHHHHH
Confidence 999999999999999999999999998765555566655544331 24899999999998643222233344444
Q ss_pred HHHc--CCCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654 146 CASK--GNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 146 ~~~~--~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
.... ...+++++||++|.|+++++++|.+.+....
T Consensus 158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 3322 2478999999999999999999998775543
No 129
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=4.7e-25 Score=170.26 Aligned_cols=159 Identities=23% Similarity=0.248 Sum_probs=113.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccc-------cc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG-------VA 76 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~~ 76 (206)
....++|+++|..|+|||||+++|++..+. ....++++.+.....+.+.+.. .+.+|||||+..+.... ..
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHH
Confidence 445789999999999999999999988763 3445555566666667666543 78999999988766542 34
Q ss_pred ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654 77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
++..+|++++|+|++..+ ....|+..+... +.|+++|+||+|+...... +..+.+....+ .++++
T Consensus 110 ~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~-------~~piIvV~NK~Dl~~~~~~----~~~~~l~~~~g-~~v~~ 174 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPTP---YEDDVVNLFKEM-------EIPFVVVVNKIDVLGEKAE----ELKGLYESRYE-AKVLL 174 (423)
T ss_dssp HHTSCSEEEEECSSSCCH---HHHHHHHHHHHT-------TCCEEEECCCCTTTTCCCT----HHHHHSSCCTT-CCCCC
T ss_pred HHhcCCEEEEEEeCCChH---HHHHHHHHHHhc-------CCCEEEEEeCcCCCCccHH----HHHHHHHHHcC-CCEEE
Confidence 678899999999994332 234555555543 6799999999999865322 44444444444 78999
Q ss_pred eeccCCCCHHHHHHHHHHHHhhc
Q 028654 157 TSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 157 ~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
+||+++.|++++|++|.+.+.+.
T Consensus 175 vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 175 VSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CSSCCTTSTTTHHHHHHHHSCCC
T ss_pred EECCCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999999998765
No 130
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=1.4e-24 Score=169.66 Aligned_cols=162 Identities=17% Similarity=0.147 Sum_probs=112.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc----------ccccc-
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLG- 74 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~- 74 (206)
..++|+++|.+|+|||||+|+|++..+. ....++++.+.....+.+++. .+.+|||||+.. +....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence 4689999999999999999999988754 444556666665666666664 588999999732 32222
Q ss_pred ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHH-HHHH---HcC
Q 028654 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAK-AWCA---SKG 150 (206)
Q Consensus 75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~-~~~~---~~~ 150 (206)
..+++.+|++++|+|++++.+.+.. .|...+.. .+.|+++|+||+|+.+.. ....++.. .+.. ...
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~-------~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~l~~~~ 321 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE-------AGKAVVIVVNKWDAVDKD--ESTMKEFEENIRDHFQFLD 321 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-------TTCEEEEEEECGGGSCCC--TTHHHHHHHHHHHHCGGGT
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH-------cCCcEEEEEECccCCCcc--hHHHHHHHHHHHHhcccCC
Confidence 2467889999999999998777664 45555442 177999999999998642 22222222 2222 234
Q ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654 151 NIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 151 ~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
..+++++||++|.|++++|+.+.+.+....
T Consensus 322 ~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 322 YAPILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp TSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred CCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 589999999999999999999998876543
No 131
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=4.2e-23 Score=157.38 Aligned_cols=162 Identities=21% Similarity=0.203 Sum_probs=118.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc---------cccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---------LGVA 76 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~ 76 (206)
...++|+++|.+|+|||||+++|.+........+..+.......+...+ ..+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 3568999999999999999999998775433344444455444444443 5789999999644321 1112
Q ss_pred ceecCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcE
Q 028654 77 FYRGADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY 154 (206)
Q Consensus 77 ~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
....+|++++|+|+++.. ++.....|+..+..... +.|+++|+||+|+... . ..++...++...+ .++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-----~~piilV~NK~Dl~~~--~--~~~~~~~~~~~~~-~~~ 312 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-----DLPFLVVINKIDVADE--E--NIKRLEKFVKEKG-LNP 312 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-----TSCEEEEECCTTTCCH--H--HHHHHHHHHHHTT-CCC
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-----CCCEEEEEECcccCCh--H--HHHHHHHHHHhcC-CCe
Confidence 345699999999998876 66777788888776543 6799999999999753 1 2244445555544 789
Q ss_pred EEeeccCCCCHHHHHHHHHHHHhhc
Q 028654 155 FETSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
+++||++|+|+++++++|.+.+.+.
T Consensus 313 ~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 313 IKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988553
No 132
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=1.6e-25 Score=159.77 Aligned_cols=150 Identities=14% Similarity=0.146 Sum_probs=103.2
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCC---CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec-
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG- 80 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~- 80 (206)
....++|+++|++|+|||||+++|.+..+.. .+.++.+..+ ....+.+|||||++.+...+..++..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 4457899999999999999999999887653 2333332222 33578899999999998888888876
Q ss_pred ---CcEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee----cHHHHHHHHHHcCCC
Q 028654 81 ---ADCCVLVYDVN-VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV----SEKKAKAWCASKGNI 152 (206)
Q Consensus 81 ---~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~ 152 (206)
+|++++|+|++ ++.++.....|+..+..........+.|+++|+||+|+........ ..+++..++...+ .
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~-~ 158 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK-K 158 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-H
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh-c
Confidence 89999999999 8888888888888776543210122789999999999987532111 1344555555544 6
Q ss_pred cEEEeeccCCCC
Q 028654 153 PYFETSAKEGFN 164 (206)
Q Consensus 153 ~~~~~s~~~~~~ 164 (206)
.++++|++++.+
T Consensus 159 ~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 SLNEVERKINEE 170 (218)
T ss_dssp HHHC--------
T ss_pred cccccccccccc
Confidence 788999998764
No 133
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.91 E-value=1e-23 Score=163.54 Aligned_cols=165 Identities=18% Similarity=0.219 Sum_probs=114.0
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCC---CCCCccccccee--eEEEEEEe-------------C--C----eEEEEE
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGAD--FLTKEVQF-------------E--D----RLFTLQ 60 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~~--~~~~~~~~-------------~--~----~~~~~~ 60 (206)
+...++|+++|+.++|||||+++|.+.. +..+..+..+.. +....+.. . + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998543 223334433332 22222211 0 1 136899
Q ss_pred EeeCCCccccccccccceecCcEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM----KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV 136 (206)
Q Consensus 61 i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~ 136 (206)
||||||++.|...+...+..+|++|+|+|+++. .+.+.+.. +.. .. ..|+++|+||+|+.......
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~-~~-----~~~iivviNK~Dl~~~~~~~ 156 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQI-IG-----QKNIIIAQNKIELVDKEKAL 156 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHH-HT-----CCCEEEEEECGGGSCHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHH-cC-----CCcEEEEEECccCCCHHHHH
Confidence 999999999988888888899999999999964 33333322 211 11 24799999999998642222
Q ss_pred ecHHHHHHHHHHc--CCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654 137 VSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 137 ~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
...+++..+.... ...+++++||+++.|+++|+++|.+.++..
T Consensus 157 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 157 ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 3344555555432 347999999999999999999999877643
No 134
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.91 E-value=3.5e-23 Score=154.17 Aligned_cols=163 Identities=16% Similarity=0.137 Sum_probs=112.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc---------cccccccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGVA 76 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~ 76 (206)
...+|+++|++|+|||||+|+|++..+. ....+.++.......+...+ ..+.+|||||.. .+......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 3458999999999999999999988653 22233333332233333333 578899999986 34445567
Q ss_pred ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654 77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (206)
Q Consensus 77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
+++.+|++++|+|+++ -+ ....++...... .+.|+++|+||+|+... .....+.+..+....+...+++
T Consensus 85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~------~~~P~ilvlNK~D~~~~--~~~~~~~l~~l~~~~~~~~~i~ 153 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLRE------GKAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIVP 153 (301)
T ss_dssp CCCCEEEEEEEEETTC-CC--HHHHHHHHHHHS------SSSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEEE
T ss_pred HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHh------cCCCEEEEEECcccCcc--HHHHHHHHHHHHHhcCcCceEE
Confidence 7889999999999976 22 222333222221 16799999999999752 2333445555555555447999
Q ss_pred eeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654 157 TSAKEGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 157 ~s~~~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
+||+++.|++++++.|.+.+++..+.
T Consensus 154 iSA~~g~~v~~l~~~i~~~l~~~~~~ 179 (301)
T 1ega_A 154 ISAETGLNVDTIAAIVRKHLPEATHH 179 (301)
T ss_dssp CCTTTTTTHHHHHHHHHTTCCBCCCS
T ss_pred EECCCCCCHHHHHHHHHHhCCcCCCC
Confidence 99999999999999999988765543
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=2e-23 Score=163.22 Aligned_cols=154 Identities=21% Similarity=0.300 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc---------cccccccce
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFY 78 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 78 (206)
.+|+++|.+|+|||||+|+|++.... ....++++.+.....+.+.+. .+.+|||||.+. +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987643 345566666666777777774 578999999653 233455678
Q ss_pred ecCcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHH-HHHHHHcCCCcEE
Q 028654 79 RGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA-KAWCASKGNIPYF 155 (206)
Q Consensus 79 ~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 155 (206)
+.+|++++|+|+.+..+... +..|+... ++|+++|+||+|+... . .... ..+. ..+..+++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~~----------~~p~ilv~NK~D~~~~----~-~~~~~~~~~-~lg~~~~~ 143 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRKS----------TVDTILVANKAENLRE----F-EREVKPELY-SLGFGEPI 143 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHHH----------TCCEEEEEESCCSHHH----H-HHHTHHHHG-GGSSCSCE
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHc----------CCCEEEEEeCCCCccc----c-HHHHHHHHH-hcCCCCEE
Confidence 99999999999987544332 33333221 6799999999998521 1 1222 3333 34434789
Q ss_pred EeeccCCCCHHHHHHHHHHHHhhcC
Q 028654 156 ETSAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 156 ~~s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
++||++|.|+++++++|.+.+.+..
T Consensus 144 ~iSA~~g~gv~~L~~~i~~~l~~~~ 168 (439)
T 1mky_A 144 PVSAEHNINLDTMLETIIKKLEEKG 168 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred EEeccCCCCHHHHHHHHHHhccccc
Confidence 9999999999999999999988653
No 136
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.91 E-value=3.2e-24 Score=161.69 Aligned_cols=164 Identities=18% Similarity=0.136 Sum_probs=120.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc----cccccccce---ecC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAFY---RGA 81 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~---~~~ 81 (206)
.+|+++|.+|+|||||+++|++........+.++.......+.+.+. ..+.+|||||..+ +..+...++ ..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 46889999999999999999987654333444444444555555532 3789999999543 223334444 459
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC-CcEEEe
Q 028654 82 DCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFET 157 (206)
Q Consensus 82 d~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 157 (206)
+++|+|+|+++ +.+++.+..|..++..+... ..++|+++|+||+|+... .+..+.+...... .+++++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~--l~~~p~ilV~NK~Dl~~~------~e~~~~l~~~l~~~~~v~~i 309 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLR--LTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPI 309 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSS--TTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhh--hcCCCEEEEEECccCCCC------HHHHHHHHHHhhcCCCEEEE
Confidence 99999999998 77888888888888765321 137899999999999752 1345555555542 679999
Q ss_pred eccCCCCHHHHHHHHHHHHhhcCC
Q 028654 158 SAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
||+++.|+++++++|.+.+.+.++
T Consensus 310 SA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 310 SAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp SSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred ECCCCcCHHHHHHHHHHHHhhCcc
Confidence 999999999999999999876554
No 137
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.90 E-value=8.2e-26 Score=178.66 Aligned_cols=166 Identities=20% Similarity=0.186 Sum_probs=118.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
.+++|+++|++++|||||+++|.+..+.....++.+.++....+...+ ...+.||||||++.|...+..++..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 357899999999999999999998766555555555554444443321 1368899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHH---HHHc-CCCcEEEeeccCC
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW---CASK-GNIPYFETSAKEG 162 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~s~~~~ 162 (206)
|+|+++....+....| ..+.. .++|+++|+||+|+.+....... +.+..+ .... ...+++++||++|
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~~-------~~vPiIVViNKiDl~~~~~~~v~-~~l~~~~~~~e~~~~~~~iv~vSAktG 152 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAKD-------AHVPIVLAINKCDKAEADPEKVK-KELLAYDVVCEDYGGDVQAVHVSALTG 152 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHHT-------TTCCEEECCBSGGGTTTSCCSSS-SHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred EEECCCCccHHHHHHH-HHHHH-------cCCcEEEEEecccccccchHHHH-HHHHhhhhhHHhcCCCceEEEEECCCC
Confidence 9999986555444333 22221 17799999999999764322222 222211 1111 2358999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCC
Q 028654 163 FNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 163 ~~i~~l~~~i~~~~~~~~~~ 182 (206)
.|+++++++|...+....+.
T Consensus 153 ~GI~eLle~I~~l~~~~~~~ 172 (537)
T 3izy_P 153 ENMMALAEATIALAEMLELK 172 (537)
T ss_dssp CSSHHHHHHHHHHHTTCCCC
T ss_pred CCchhHHHHHHHhhhccccc
Confidence 99999999999887644443
No 138
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=1.2e-23 Score=165.23 Aligned_cols=164 Identities=17% Similarity=0.157 Sum_probs=115.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCeEEEEEEeeCCC----------cccccccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLG 74 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 74 (206)
...++|+++|.+|+|||||+++|.+... .....++++.+.....+...+. .+.+||||| ++.+....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 3468999999999999999999997653 2344555555555556666664 788999999 45555443
Q ss_pred c-cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc----
Q 028654 75 V-AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK---- 149 (206)
Q Consensus 75 ~-~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~---- 149 (206)
. .+++.+|++++|+|+++...... ..|...+.. .+.|+++|+||+|+... .....++....+...
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~-------~~~~~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 340 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE-------AGKAVVIVVNKWDAVDK--DESTMKEFEENIRDHFQFL 340 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH-------TTCEEEEEEECGGGSCC--CSSHHHHHHHHHHHHCGGG
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH-------cCCCEEEEEEChhcCCC--chHHHHHHHHHHHHhcccC
Confidence 3 36788999999999987544222 344444433 17899999999999865 344455555544433
Q ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 150 GNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 150 ~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
...+++++||++|.|++++|++|.+.+.....
T Consensus 341 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 341 DYAPILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp TTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred CCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 35899999999999999999999998765543
No 139
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.90 E-value=7.2e-23 Score=164.10 Aligned_cols=163 Identities=18% Similarity=0.203 Sum_probs=112.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC--C-------------CcccccceeeEEEEEEe---CCeEEEEEEeeCCCcc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS--N-------------QYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQE 68 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~--~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~ 68 (206)
...+|+++|+.++|||||+++|+..... . +...+.+.......+.+ ++..+.+.||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 3579999999999999999999863211 0 01111222222222323 4557899999999999
Q ss_pred ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH
Q 028654 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS 148 (206)
Q Consensus 69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~ 148 (206)
+|...+..++..+|++|+|+|+++....+....|..... .++|+++|+||+|+.... ..+...++...
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--------~~ipiIvViNKiDl~~a~----~~~v~~ei~~~ 150 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--------MDLEVVPVLNKIDLPAAD----PERVAEEIEDI 150 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--------TTCEEEEEEECTTSTTCC----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEeeeccCccccc----HHHHHHHHHHH
Confidence 999999999999999999999998766666666655442 177999999999998652 22333444444
Q ss_pred cC--CCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 149 KG--NIPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 149 ~~--~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
.+ ...++++||++|.|+++++++|.+.++....
T Consensus 151 lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~ 185 (599)
T 3cb4_D 151 VGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEG 185 (599)
T ss_dssp TCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCC
T ss_pred hCCCcceEEEeecccCCCchhHHHHHhhcCCCccc
Confidence 43 2358999999999999999999998876443
No 140
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=5.1e-24 Score=166.43 Aligned_cols=156 Identities=16% Similarity=0.215 Sum_probs=100.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc--------ccccccccce
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVAFY 78 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~ 78 (206)
..+|+++|.+|+|||||+|+|.+..+. ....++.+.+.......+.+ ..+.+|||||.. .+......++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 368999999999999999999987654 23334444444444443343 578999999975 4556667788
Q ss_pred ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654 79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (206)
Q Consensus 79 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (206)
..+|++++|+|+.+..+... .++..+.. . .+.|+++|+||+|+...... ...+. ..+..+++++|
T Consensus 81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~---~---~~~pvilv~NK~D~~~~~~~------~~~~~-~lg~~~~~~iS 145 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAAD--EEVAKILY---R---TKKPVVLAVNKLDNTEMRAN------IYDFY-SLGFGEPYPIS 145 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHH--HHHHHHHT---T---CCSCEEEEEECCCC-----C------CCSSG-GGSSCCCEECB
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHH---H---cCCCEEEEEECccCccchhh------HHHHH-HcCCCCeEEEe
Confidence 99999999999988665443 23333222 1 27799999999998753111 11121 23334789999
Q ss_pred ccCCCCHHHHHHHHHHHHhhcC
Q 028654 159 AKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 159 ~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
|++|.|+.++++++.+.+.+..
T Consensus 146 A~~g~gv~~L~~~i~~~l~~~~ 167 (436)
T 2hjg_A 146 GTHGLGLGDLLDAVAEHFKNIP 167 (436)
T ss_dssp TTTTBTHHHHHHHHHHTGGGCC
T ss_pred CcCCCChHHHHHHHHHhcCccc
Confidence 9999999999999999887644
No 141
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.90 E-value=1.5e-22 Score=161.98 Aligned_cols=164 Identities=16% Similarity=0.235 Sum_probs=114.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCC-------------CcccccceeeEEEEEEe---CCeEEEEEEeeCCCc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRK--FSN-------------QYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 67 (206)
....+|+++|+.++|||||+++|+... +.. +...+.+.......+.+ ++..+.+.||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 346799999999999999999997531 110 00111122111122222 455689999999999
Q ss_pred cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH
Q 028654 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA 147 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~ 147 (206)
.+|...+..++..+|++++|+|+++....+....|..... .++|+++|+||+|+.... ..+...++..
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--------~~ipiIvviNKiDl~~a~----~~~v~~el~~ 151 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--------QDLVIIPVINKIDLPSAD----VDRVKKQIEE 151 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--------TTCEEEEEEECTTSTTCC----HHHHHHHHHH
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--------CCCCEEEEEeccCccccC----HHHHHHHHHH
Confidence 9999888889999999999999998777777666655442 178999999999998642 2233444444
Q ss_pred HcCC--CcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 148 SKGN--IPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 148 ~~~~--~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
..+. ..++++||++|.|+++++++|.+.++....
T Consensus 152 ~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~ 187 (600)
T 2ywe_A 152 VLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPKG 187 (600)
T ss_dssp TSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred hhCCCcccEEEEEeecCCCchHHHHHHHHhcccccc
Confidence 4441 258999999999999999999998876443
No 142
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.90 E-value=2.6e-23 Score=163.13 Aligned_cols=153 Identities=23% Similarity=0.272 Sum_probs=115.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc-cccc--------ccccc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-RFQS--------LGVAF 77 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~~ 77 (206)
.++|+++|.+|+|||||+|+|.+.... ....++++.+.....+.+++ ..+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999987532 45566666777777777776 568899999987 5432 12356
Q ss_pred eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
+..+|++++|+|++++.+++... ++.. .. +.|+++|+||+|+... ...+++..+.. ...+++++
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~----l~-----~~piivV~NK~DL~~~----~~~~~~~~~~~--~~~~~i~i 384 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILER----IK-----NKRYLVVINKVDVVEK----INEEEIKNKLG--TDRHMVKI 384 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHH----HT-----TSSEEEEEEECSSCCC----CCHHHHHHHHT--CSTTEEEE
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHH----hc-----CCCEEEEEECcccccc----cCHHHHHHHhc--CCCcEEEE
Confidence 78899999999999877765532 2222 21 6799999999999753 23344444432 23689999
Q ss_pred eccCCCCHHHHHHHHHHHHhh
Q 028654 158 SAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~~~ 178 (206)
||+++.|+++++++|.+.+..
T Consensus 385 SAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 385 SALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp EGGGTCCHHHHHHHHHHHTHH
T ss_pred ECCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999997664
No 143
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.89 E-value=1.3e-22 Score=158.23 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=105.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCcccccceeeEEEEEEeC
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFE 53 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 53 (206)
....++|+++|++++|||||+++|++... ..+..++.+.+.....+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 34578999999999999999999965321 11122334444444444444
Q ss_pred CeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhh---HH---HHHHHHHHHHHhcCCCCCCCCc-EEEEeeC
Q 028654 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS---FD---NLNNWREEFLIQASPSDPENFP-FVVLGNK 126 (206)
Q Consensus 54 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~p-viiv~nK 126 (206)
+ ..+.||||||+++|...+..++..+|++|+|+|+++... +. .....+..+.. . ++| +++|+||
T Consensus 94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~------~v~~iIvviNK 164 (439)
T 3j2k_7 94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-A------GVKHLIVLINK 164 (439)
T ss_pred C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-c------CCCeEEEEeec
Confidence 3 689999999999999999999999999999999987532 11 11111111111 1 566 9999999
Q ss_pred CCCCCCCc----ceecHHHHHHHHHHcC-----CCcEEEeeccCCCCHHHHHH
Q 028654 127 TDVDGGNS----RVVSEKKAKAWCASKG-----NIPYFETSAKEGFNVEAAFE 170 (206)
Q Consensus 127 ~D~~~~~~----~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~l~~ 170 (206)
+|+..... .....+++..+....+ ..+++++||++|.|++++.+
T Consensus 165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99964321 1122333444444433 36899999999999999665
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.89 E-value=4.9e-22 Score=151.20 Aligned_cols=166 Identities=19% Similarity=0.117 Sum_probs=108.9
Q ss_pred eE-EEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc---------cccccccce
Q 028654 9 LK-VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFY 78 (206)
Q Consensus 9 ~~-i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 78 (206)
++ |+++|++|+|||||+|+|.+..+.....+..+.+.....+.+.+ ..+.+|||+|... +... ...+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHH
Confidence 44 99999999999999999998876544455556666677777777 4678999999521 2222 2346
Q ss_pred ecCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc--CCCcE
Q 028654 79 RGADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK--GNIPY 154 (206)
Q Consensus 79 ~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~ 154 (206)
..+|++++|+|++++. ....+..|...+..... .+.|+++|+||+|+.... .....+.+..+.... ...++
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~----~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGV----SGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTC----CSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEEE
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCc----CCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCCCCcE
Confidence 7899999999999876 44445555444443321 267999999999997542 111122333333443 22468
Q ss_pred EEeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654 155 FETSAKEGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
+++|++++.|+++++++|.+.+......
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~~l~~~~~~ 358 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQLATQLSLE 358 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHHC--
T ss_pred EEEECCCCcCHHHHHHHHHHHhcccCCC
Confidence 9999999999999999999988765543
No 145
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.89 E-value=2.8e-22 Score=146.67 Aligned_cols=166 Identities=17% Similarity=0.237 Sum_probs=106.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccc-cceeeEEEEEEeCCeEEEEEEeeCCCcccccccc---------
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKAT-IGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------- 74 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------- 74 (206)
...++|+|+|++|+|||||+++|++... .....++ ++...........+ ..+.||||||...+....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 4578999999999999999999998763 3333333 44444444555555 578999999976543222
Q ss_pred --ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEee-CCCCCCCCcceecH-------HHHHH
Q 028654 75 --VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN-KTDVDGGNSRVVSE-------KKAKA 144 (206)
Q Consensus 75 --~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~n-K~D~~~~~~~~~~~-------~~~~~ 144 (206)
..+++.+|++++|+|++...... ..++..+...+... .+.|+++|+| |+|+.+.. ... +.+..
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~~---~~~~i~~~~~~~~~~ 170 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQD--QQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGGS---LMDYMHDSDNKALSK 170 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHH--HHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTCC---HHHHHHHCCCHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHH--HHHHHHHHHHhCch--hhccEEEEEEcccccCCcc---HHHHHHhcchHHHHH
Confidence 22567899999999998622211 12222333322210 0346666666 99997431 111 22344
Q ss_pred HHHHcCCCc--E--EEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654 145 WCASKGNIP--Y--FETSAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 145 ~~~~~~~~~--~--~~~s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
+....+... + +++||+++.|++++|++|.+.+....
T Consensus 171 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 171 LVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 555444211 2 78999999999999999999988755
No 146
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.89 E-value=6.8e-23 Score=160.14 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=105.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc--------cccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF 77 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 77 (206)
..++|+++|++|+|||||+|+|.+..+. ....++++.+.....+.+++ ..+.+|||||..++... ...+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4679999999999999999999986543 34445555555555666666 56789999997554332 2346
Q ss_pred eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (206)
Q Consensus 78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (206)
+..+|++++|+|++++.+... ..|+..+ . +.|+++|+||+|+....... ....+ ....+++++
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~-----~~piivV~NK~Dl~~~~~~~----~~~~~---~~~~~~i~i 363 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQV----K-----HRPLILVMNKIDLVEKQLIT----SLEYP---ENITQIVHT 363 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHH----T-----TSCEEEEEECTTSSCGGGST----TCCCC---TTCCCEEEE
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhc----c-----CCcEEEEEECCCCCcchhhH----HHHHh---ccCCcEEEE
Confidence 788999999999998665543 3444433 2 45999999999997642111 11111 123689999
Q ss_pred eccCCCCHHHHHHHHHHHHhhcC
Q 028654 158 SAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
|++++.|+++++++|.+.+....
T Consensus 364 SAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 364 AAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp BTTTTBSHHHHHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999887654
No 147
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.89 E-value=2.6e-23 Score=153.21 Aligned_cols=167 Identities=15% Similarity=0.155 Sum_probs=93.6
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-Cc-------ccccceeeEEEEEEeCCeEEEEEEeeCCCcccc------
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QY-------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------ 70 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------ 70 (206)
+...++|+++|.+|+|||||+|+|++..... .+ .++.+.+.....+...+..+.+.+|||||....
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 4567999999999999999999988765443 22 445555555555555666679999999996321
Q ss_pred -cccc-------ccce-------------ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654 71 -QSLG-------VAFY-------------RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (206)
Q Consensus 71 -~~~~-------~~~~-------------~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 129 (206)
.... ..++ ..+|+++++++.+.......-..++..+. . ++|+++|+||+|+
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~----~----~~pvi~V~nK~D~ 156 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----E----KVNIIPLIAKADT 156 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT----T----TSCEEEEESSGGG
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh----c----cCCEEEEEeccCC
Confidence 1111 1112 23789999998765222122223333332 1 6799999999998
Q ss_pred CCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
..........+.+.......+ ++++++|+.++.|+++++++|.+.++-..
T Consensus 157 ~~~~e~~~~~~~i~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l~~~~p~~v 206 (274)
T 3t5d_A 157 LTPEECQQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLPLAV 206 (274)
T ss_dssp SCHHHHHHHHHHHHHHHHHTT-CCCCCC-----------CHHHHHTCSEEC
T ss_pred CCHHHHHHHHHHHHHHHHHcC-CeEEcCCCCCChhHHHHHHHHhcCCCcEE
Confidence 753222222233344444444 78899999999999999999988765443
No 148
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=1.3e-21 Score=141.38 Aligned_cols=168 Identities=15% Similarity=0.173 Sum_probs=106.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc--ccceeeEEEEEEeCCeEEEEEEeeCCCc-----------ccccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA--TIGADFLTKEVQFEDRLFTLQIWDTAGQ-----------ERFQS 72 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~~~~ 72 (206)
...++|+++|.+|+|||||+|+|++..+.....+ +.+.........+.+ ..+.+|||||. ..+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 4579999999999999999999999887655444 445555555666665 57789999993 23344
Q ss_pred ccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee----cHHHHHHHHHH
Q 028654 73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV----SEKKAKAWCAS 148 (206)
Q Consensus 73 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----~~~~~~~~~~~ 148 (206)
.....+..+|++++|+|++...... ..|+..+...+... ...|+++|+||+|+........ ..+.++.+...
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 4444556789999999987533311 22333332211100 0458999999999875422111 12356667777
Q ss_pred cCCCcEEEeeccCC-----CCHHHHHHHHHHHHhhcC
Q 028654 149 KGNIPYFETSAKEG-----FNVEAAFECIAKNALKNE 180 (206)
Q Consensus 149 ~~~~~~~~~s~~~~-----~~i~~l~~~i~~~~~~~~ 180 (206)
.+ ..++.+++..+ .++.+++..+.+.+.+..
T Consensus 181 ~~-~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~ 216 (239)
T 3lxx_A 181 FG-DRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK 216 (239)
T ss_dssp HS-SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cC-CEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 66 56777766543 689999999988886643
No 149
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=2e-23 Score=163.89 Aligned_cols=161 Identities=16% Similarity=0.166 Sum_probs=101.7
Q ss_pred cccceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCC--------ccccccc
Q 028654 3 SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG--------QERFQSL 73 (206)
Q Consensus 3 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~ 73 (206)
...+...+|+++|.+|+|||||+|+|.+..+. ....++.+.+... .........+.+||||| ++.+...
T Consensus 18 ~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~--~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~ 95 (456)
T 4dcu_A 18 GSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIY--SSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQ 95 (456)
T ss_dssp -----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEE--EECTTCSSCCEEECCCC------CCHHHHHHH
T ss_pred hhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEE--EEEEECCceEEEEECCCCCCcchHHHHHHHHH
Confidence 34566789999999999999999999987654 2223333333333 33333345789999999 6667777
Q ss_pred cccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCc
Q 028654 74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIP 153 (206)
Q Consensus 74 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (206)
...++..+|++++|+|..+..+.. ..++..+... .+.|+++|+||+|+.... +...++. ..+...
T Consensus 96 ~~~~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~~------~~~pvilV~NK~D~~~~~------~~~~e~~-~lg~~~ 160 (456)
T 4dcu_A 96 AEIAMDEADVIIFMVNGREGVTAA--DEEVAKILYR------TKKPVVLAVNKLDNTEMR------ANIYDFY-SLGFGE 160 (456)
T ss_dssp HHHHHHHCSEEEEEEESSSCSCHH--HHHHHHHHTT------CCSCEEEEEECC---------------CCSG-GGSSSS
T ss_pred HHhhHhhCCEEEEEEeCCCCCChH--HHHHHHHHHH------cCCCEEEEEECccchhhh------hhHHHHH-HcCCCc
Confidence 778889999999999987643322 2333333222 278999999999986431 1111111 223346
Q ss_pred EEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654 154 YFETSAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 154 ~~~~s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
++++||++|.|+.++++.+.+.+.+..
T Consensus 161 ~~~iSA~~g~gv~~L~~~i~~~l~~~~ 187 (456)
T 4dcu_A 161 PYPISGTHGLGLGDLLDAVAEHFKNIP 187 (456)
T ss_dssp EEECCTTTCTTHHHHHHHHHTTGGGSC
T ss_pred eEEeecccccchHHHHHHHHhhccccc
Confidence 789999999999999999999876543
No 150
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.88 E-value=2.8e-22 Score=159.03 Aligned_cols=117 Identities=18% Similarity=0.214 Sum_probs=84.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC----------------------CCcccccceeeEEEEEEeCCeEEEEEEee
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS----------------------NQYKATIGADFLTKEVQFEDRLFTLQIWD 63 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 63 (206)
....+|+++|++|+|||||+++|+..... ....++.+.......+.+.+ ..+.|||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 34689999999999999999999621110 00112223333334444444 6889999
Q ss_pred CCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 64 TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 64 ~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
|||+.++......+++.+|++++|+|+++.........| ..+.. .++|+++|+||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~-------~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL-------RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT-------TTCCEEEEEECTTSCCS
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH-------cCCCEEEEEeCCCCccc
Confidence 999999999999999999999999999986665554444 22221 17899999999999754
No 151
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.88 E-value=1.2e-22 Score=156.88 Aligned_cols=164 Identities=16% Similarity=0.119 Sum_probs=110.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC-------CCCC-------cccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRK-------FSNQ-------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS 72 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 72 (206)
..++|+++|+.++|||||+++|.+.. +... .....+.++......+......+.||||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 45899999999999999999998631 1100 001112222222333433446789999999999988
Q ss_pred ccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcc-eecHHHHHHHHHHcC
Q 028654 73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSR-VVSEKKAKAWCASKG 150 (206)
Q Consensus 73 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~ 150 (206)
.+..++..+|++|+|+|+++....+....| ..+.. . ++| +++++||+|+...... ....+++..++...+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-~------~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 153 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-I------GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG 153 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-T------TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-c------CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcC
Confidence 888889999999999999985443333333 22222 1 668 6899999999752111 122345556666554
Q ss_pred ----CCcEEEeeccCCCC----------HHHHHHHHHHHHhh
Q 028654 151 ----NIPYFETSAKEGFN----------VEAAFECIAKNALK 178 (206)
Q Consensus 151 ----~~~~~~~s~~~~~~----------i~~l~~~i~~~~~~ 178 (206)
..+++++||+++.+ +.++++.|.+.++.
T Consensus 154 ~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 154 YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp SCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred CCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 36899999999764 88999998887764
No 152
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.88 E-value=2.4e-22 Score=158.72 Aligned_cols=153 Identities=17% Similarity=0.142 Sum_probs=98.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCcccccceeeEEEEEEeCC
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-------------------------------NQYKATIGADFLTKEVQFED 54 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (206)
...++|+++|.+++|||||+++|++.... ....++.+.+.....+. .
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~--~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS--T 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE--C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe--c
Confidence 45789999999999999999999765211 11122333333333333 3
Q ss_pred eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHH-----HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-----LNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (206)
Q Consensus 55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 129 (206)
....+.||||||++++...+..++..+|++|+|+|+++...... .......+..... ..|+++|+||+|+
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-----~~~iIvviNK~Dl 183 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-----IHNLIIAMNKMDN 183 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT-----CCCEEEEEECGGG
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC-----CCcEEEEEECcCc
Confidence 34688999999999999999999999999999999998643211 1111111222111 2369999999999
Q ss_pred CCCCcceecHH----HHHHHHHHcC----CCcEEEeeccCCCCHHH
Q 028654 130 DGGNSRVVSEK----KAKAWCASKG----NIPYFETSAKEGFNVEA 167 (206)
Q Consensus 130 ~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~s~~~~~~i~~ 167 (206)
.+. .....+ ++..+....+ ..+++++||++|.|+++
T Consensus 184 ~~~--~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 184 VDW--SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GTT--CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred ccc--hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 763 222222 3333333332 36899999999999874
No 153
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.88 E-value=8.1e-23 Score=158.27 Aligned_cols=164 Identities=15% Similarity=0.100 Sum_probs=112.3
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcC--------CCCCC---------cccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNR--------KFSNQ---------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 67 (206)
....++|+++|++++|||||+++|.+. .+... ...+.+.+. ....+......+.||||||+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT--AHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSC--EEEEEECSSCEEEEEECCCS
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEe--eeeEeccCCeEEEEEECCCh
Confidence 346789999999999999999999873 11110 012222222 33334334467899999999
Q ss_pred cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcc-eecHHHHHHH
Q 028654 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSR-VVSEKKAKAW 145 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~~~~~ 145 (206)
++|...+..++..+|++|+|+|+++....+ ...++..+... ++| +++|+||+|+...... ....+++..+
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~-------~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~ 157 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV-------GVPYIVVFMNKVDMVDDPELLDLVEMEVRDL 157 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT-------TCCCEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc-------CCCEEEEEEECccccCcHHHHHHHHHHHHHH
Confidence 999888888899999999999998865433 34444444321 667 8899999999752111 1123345556
Q ss_pred HHHcC----CCcEEEeeccCCCC------------------HHHHHHHHHHHHhh
Q 028654 146 CASKG----NIPYFETSAKEGFN------------------VEAAFECIAKNALK 178 (206)
Q Consensus 146 ~~~~~----~~~~~~~s~~~~~~------------------i~~l~~~i~~~~~~ 178 (206)
....+ ..+++++||+++.| +.+|++.|.+.++.
T Consensus 158 l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 158 LNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 65554 37899999999977 77788887776653
No 154
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=9e-22 Score=153.86 Aligned_cols=161 Identities=23% Similarity=0.202 Sum_probs=106.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccc-----------
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG----------- 74 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------- 74 (206)
..++|+++|++|+|||||+|+|.+.... ....++++.+.....+.+++. .+.+|||||........
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 4589999999999999999999987642 334455555555566677774 57899999964332211
Q ss_pred -ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHH-HHHH---Hc
Q 028654 75 -VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAK-AWCA---SK 149 (206)
Q Consensus 75 -~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~-~~~~---~~ 149 (206)
..++..+|++++++|+++..+.... .+...+.. .+.|+++|+||+|+... .....++.. .+.. ..
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~-------~~~~~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 326 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER-------RGRASVVVFNKWDLVVH--REKRYDEFTKLFREKLYFI 326 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-------TTCEEEEEEECGGGSTT--GGGCHHHHHHHHHHHCGGG
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECccCCCc--hhhHHHHHHHHHHHHhccC
Confidence 2356779999999999876554432 22222221 16799999999999764 222233322 2222 22
Q ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654 150 GNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 150 ~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
...+++++||++|.|++++|+.+.+.+...
T Consensus 327 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 327 DYSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp TTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 357899999999999999999999877554
No 155
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.88 E-value=2.3e-22 Score=145.84 Aligned_cols=170 Identities=14% Similarity=0.157 Sum_probs=106.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccc--cceeeEEEEEEeCCeEEEEEEeeCCCc--------cccccccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKAT--IGADFLTKEVQFEDRLFTLQIWDTAGQ--------ERFQSLGV 75 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~ 75 (206)
...++|+++|.+|+|||||+|++++........+. ++...........+ ..+.+|||||. +.+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 46799999999999999999999988765433332 33344444455555 57889999995 33333333
Q ss_pred cce----ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceec----HHHHHHHHH
Q 028654 76 AFY----RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS----EKKAKAWCA 147 (206)
Q Consensus 76 ~~~----~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~----~~~~~~~~~ 147 (206)
.++ ..+|++++|+|++.... . ...++..+...+.. ...+.|+++++||.|+.+....... .+.++.+..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~-~-~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTA-Q-DQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCH-H-HHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCH-H-HHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHH
Confidence 333 88999999999985221 1 12223333333221 1125689999999999764211111 134566666
Q ss_pred HcCCCcEEEeeccC-----CCCHHHHHHHHHHHHhhcCC
Q 028654 148 SKGNIPYFETSAKE-----GFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 148 ~~~~~~~~~~s~~~-----~~~i~~l~~~i~~~~~~~~~ 181 (206)
..+ ..++..++.. +.++++|++.|.+.+.++.+
T Consensus 174 ~~g-~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~ 211 (247)
T 3lxw_A 174 ECG-GRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKG 211 (247)
T ss_dssp HTT-TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HcC-CeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 666 4566665544 57999999999998887544
No 156
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.87 E-value=2.3e-24 Score=169.18 Aligned_cols=159 Identities=21% Similarity=0.218 Sum_probs=107.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~ 86 (206)
.+++|+++|+.++|||||+++|.+..+.....++.+.+.....+.+++ ..+.||||||++.|...+...+..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 457899999999999999999987654433334444333333333333 467899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHH--HHHHHHHHc-CCCcEEEeeccCCC
Q 028654 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK--KAKAWCASK-GNIPYFETSAKEGF 163 (206)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~s~~~~~ 163 (206)
|+|+++....+....| ..+.. .+.|+++++||+|+..........+ +...+.... +..+++++||++|.
T Consensus 81 VVda~~g~~~qT~e~l-~~~~~-------~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI-QHAKA-------AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EEETTTBSCTTTHHHH-HHHHH-------TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EeecccCccHHHHHHH-HHHHh-------cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 9999873222222222 11211 1779999999999975422111100 000001111 23689999999999
Q ss_pred CHHHHHHHHHHH
Q 028654 164 NVEAAFECIAKN 175 (206)
Q Consensus 164 ~i~~l~~~i~~~ 175 (206)
|+++++++|...
T Consensus 153 gI~eLle~I~~~ 164 (501)
T 1zo1_I 153 GIDELLDAILLQ 164 (501)
T ss_dssp TCTTHHHHTTTT
T ss_pred Ccchhhhhhhhh
Confidence 999999998753
No 157
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.2e-22 Score=142.11 Aligned_cols=118 Identities=15% Similarity=0.193 Sum_probs=87.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC---CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec--
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG-- 80 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-- 80 (206)
...++|+++|++|+|||||+++|.+..+.. ...++.+..+ ....+.+|||||+..+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 456899999999999999999999887543 2222222111 33578899999998887777777765
Q ss_pred --CcEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 81 --ADCCVLVYDVN-VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 81 --~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
+|++++|+|++ +..++..+..|+..+..........+.|+++|+||+|+...
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999999 88888888888877765432101227899999999999865
No 158
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.87 E-value=3.9e-22 Score=152.15 Aligned_cols=149 Identities=15% Similarity=0.034 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d 89 (206)
+|+++|++++|||||+++|+ ....+.+.....+...+ ..+.||||||+++|...+...+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999997 22223333333333333 568999999999998888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEee-CCCCCCCCcceecHHHHHHHHHHcC--CCcEEE--eeccC--
Q 028654 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGN-KTDVDGGNSRVVSEKKAKAWCASKG--NIPYFE--TSAKE-- 161 (206)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~n-K~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~s~~~-- 161 (206)
+.. ......+++..+... ++|. ++++| |+|+ +........+++..+....+ ..++++ +||++
T Consensus 93 -~~g-~~~qt~e~~~~~~~~-------~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~ 162 (370)
T 2elf_A 93 -PQG-LDAHTGECIIALDLL-------GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKN 162 (370)
T ss_dssp -TTC-CCHHHHHHHHHHHHT-------TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSS
T ss_pred -CCC-CcHHHHHHHHHHHHc-------CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCc
Confidence 542 233334444443322 5677 89999 9999 43111112244555544432 478999 99999
Q ss_pred -CCCHHHHHHHHHHHHhh
Q 028654 162 -GFNVEAAFECIAKNALK 178 (206)
Q Consensus 162 -~~~i~~l~~~i~~~~~~ 178 (206)
+.|++++++.|.+.+..
T Consensus 163 ~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 163 PFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhccc
Confidence 99999999999998764
No 159
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.87 E-value=1.1e-21 Score=157.48 Aligned_cols=163 Identities=23% Similarity=0.225 Sum_probs=106.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC----------------CeEEEEEEeeCCCccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAGQER 69 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~ 69 (206)
...++|+++|++++|||||+++|.+..+........+.+......... .....+.||||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 346799999999999999999998764432111111111111111110 0112589999999999
Q ss_pred cccccccceecCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce----------
Q 028654 70 FQSLGVAFYRGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV---------- 136 (206)
Q Consensus 70 ~~~~~~~~~~~~d~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~---------- 136 (206)
|...+..++..+|++|+|+|+++ +.+++.+.. +.. .++|+++++||+|+.+.....
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~-------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa 151 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM-------YRTPFVVAANKIDRIHGWRVHEGRPFMETFS 151 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH-------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH-------cCCeEEEEecccccccccccccCCchHHHHH
Confidence 99999988999999999999998 455443321 211 178999999999997531110
Q ss_pred ----ecHHH-------HHHHHHHc--------------CCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654 137 ----VSEKK-------AKAWCASK--------------GNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 137 ----~~~~~-------~~~~~~~~--------------~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
...+. ........ ...+++++||++|.|+++++++|...+...
T Consensus 152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 00011 11111111 224899999999999999999999887643
No 160
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.87 E-value=3e-23 Score=161.87 Aligned_cols=162 Identities=15% Similarity=0.201 Sum_probs=103.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCC-----------------------------cccccceeeEEEEEEeCC
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNR--KFSNQ-----------------------------YKATIGADFLTKEVQFED 54 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 54 (206)
+..++|+++|+.++|||||+++|+.. .+... ..++.+.+.....+ ..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~--~~ 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF--ET 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE--EC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE--ec
Confidence 35689999999999999999999864 22211 01222233222223 33
Q ss_pred eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-cEEEEeeCCCCCCCC
Q 028654 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDGGN 133 (206)
Q Consensus 55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pviiv~nK~D~~~~~ 133 (206)
....+.||||||++++...+..++..+|++|+|+|+++ .+++....|..+...+.......+. |+++++||+|+.+..
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 34679999999999999989999999999999999998 5555332222111111100000133 589999999998632
Q ss_pred cc----eecHHHHHHHHHHcC----CCcEEEeeccCCCCHHHHHH
Q 028654 134 SR----VVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAAFE 170 (206)
Q Consensus 134 ~~----~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~l~~ 170 (206)
.. ....+++..++...+ ..+++++||++|.|+.++++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 11 223455666666654 37899999999999986543
No 161
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=2.2e-21 Score=151.36 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=101.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CC----------cc---------------------cccceeeEEEEEEe
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS--NQ----------YK---------------------ATIGADFLTKEVQF 52 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~--~~----------~~---------------------~~~~~~~~~~~~~~ 52 (206)
...++|+++|++++|||||+++|++.... .. .. .+.+.+..... +
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~--~ 99 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY--F 99 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE--E
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeE--e
Confidence 34689999999999999999999865311 00 00 11111211222 2
Q ss_pred CCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-cEEEEeeCCCCCC
Q 028654 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDG 131 (206)
Q Consensus 53 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pviiv~nK~D~~~ 131 (206)
......+.||||||+++|...+..++..+|++|+|+|+++....+. ..++..+.. . +. |+++|+||+|+.+
T Consensus 100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~-~------~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASL-L------GIKHIVVAINKMDLNG 171 (434)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHH-T------TCCEEEEEEECTTTTT
T ss_pred ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-c------CCCeEEEEEEcCcCCc
Confidence 2233678999999999998888888999999999999997543322 333333322 1 33 5999999999986
Q ss_pred CCcc--eecHHHHHHHHHHcC----CCcEEEeeccCCCCHHHH
Q 028654 132 GNSR--VVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 132 ~~~~--~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~l 168 (206)
.... ....+++..++...+ ..+++++||++|.|++++
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 3211 112344555555544 368999999999999874
No 162
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.4e-22 Score=159.59 Aligned_cols=157 Identities=20% Similarity=0.209 Sum_probs=101.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc-------------------------------ccccceeeEEEEEEeCC
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY-------------------------------KATIGADFLTKEVQFED 54 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 54 (206)
...++|+++|++++|||||+++|++....... .++.+.+.....+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~- 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence 45789999999999999999999876332111 1233333333333333
Q ss_pred eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhh---HHHHHHHHHHHHHhcCCCCCCCC-cEEEEeeCCCCC
Q 028654 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS---FDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVD 130 (206)
Q Consensus 55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-pviiv~nK~D~~ 130 (206)
...+.||||||++.+...+..++..+|++|+|+|+++... +.....+...+..... . +. |+++|+||+|+.
T Consensus 244 -~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-l---gi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 244 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-L---GIHNLIIAMNKMDNV 318 (611)
T ss_dssp -SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-T---TCCEEEEEEECTTTT
T ss_pred -CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-c---CCCeEEEEEeccccc
Confidence 3678999999999999999999999999999999986320 0000111111111111 1 33 599999999998
Q ss_pred CCCcc--eecHHHHHHHHHHcC----CCcEEEeeccCCCCHHHH
Q 028654 131 GGNSR--VVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 131 ~~~~~--~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~l 168 (206)
+.... ....+++..+....+ ..+++++||++|.|+.++
T Consensus 319 ~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 319 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred chhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 63111 112333444444333 368999999999999876
No 163
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.86 E-value=5.6e-21 Score=144.55 Aligned_cols=123 Identities=15% Similarity=0.175 Sum_probs=96.5
Q ss_pred EEEEEEeeCCCccccccccccceecCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEee
Q 028654 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV----------MKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125 (206)
Q Consensus 56 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~n 125 (206)
.+.+.+||++|++.++..+..++++++++|+|+|+++ ..++.....|+..+.... ...+.|+++|+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~---~~~~~piiLv~N 268 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK---WFTDTSIILFLN 268 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG---GGTTSEEEEEEE
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc---cccCCcEEEEEE
Confidence 3789999999999999999999999999999999998 456777777777765431 123789999999
Q ss_pred CCCCCCCC-------------cceecHHHHHHHHHH----------cCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 126 KTDVDGGN-------------SRVVSEKKAKAWCAS----------KGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 126 K~D~~~~~-------------~~~~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
|+|+.... ......+++..++.. ...+.+++|||+++.|++++|+++.+.+.+...
T Consensus 269 K~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l 347 (353)
T 1cip_A 269 KKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNL 347 (353)
T ss_dssp CHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred CcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHH
Confidence 99985210 012456777777652 234789999999999999999999999887554
No 164
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=3e-21 Score=144.03 Aligned_cols=131 Identities=11% Similarity=0.126 Sum_probs=97.2
Q ss_pred EEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhcCCCCCC
Q 028654 47 TKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------VMKSFDNLNNWREEFLIQASPSDPE 116 (206)
Q Consensus 47 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (206)
...+.+.+ +.+.+||++|++.++..+..++++++++|+|+|++ +..++.....|+..+... ....
T Consensus 159 ~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~---~~~~ 233 (327)
T 3ohm_A 159 EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY---PWFQ 233 (327)
T ss_dssp EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS---GGGT
T ss_pred EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh---hccC
Confidence 33444444 78999999999999999999999999999999765 455666666666665432 2223
Q ss_pred CCcEEEEeeCCCCCCC--------------CcceecHHHHHHHHH---------HcCCCcEEEeeccCCCCHHHHHHHHH
Q 028654 117 NFPFVVLGNKTDVDGG--------------NSRVVSEKKAKAWCA---------SKGNIPYFETSAKEGFNVEAAFECIA 173 (206)
Q Consensus 117 ~~pviiv~nK~D~~~~--------------~~~~~~~~~~~~~~~---------~~~~~~~~~~s~~~~~~i~~l~~~i~ 173 (206)
+.|+++++||+|+... .......++...+.. ....+.+++|||+++.|++.+|..+.
T Consensus 234 ~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~ 313 (327)
T 3ohm_A 234 NSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK 313 (327)
T ss_dssp TCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHH
Confidence 7899999999997532 011356667766643 11236788999999999999999999
Q ss_pred HHHhhcCCC
Q 028654 174 KNALKNEPQ 182 (206)
Q Consensus 174 ~~~~~~~~~ 182 (206)
+.+++..-.
T Consensus 314 ~~Il~~~l~ 322 (327)
T 3ohm_A 314 DTILQLNLK 322 (327)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhHH
Confidence 999886543
No 165
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.86 E-value=3.3e-22 Score=156.81 Aligned_cols=155 Identities=16% Similarity=0.228 Sum_probs=102.9
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcC--CCCC-----------------------------CcccccceeeEEEEEEeC
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNR--KFSN-----------------------------QYKATIGADFLTKEVQFE 53 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 53 (206)
.+..++|+++|++++|||||+++|++. .+.. +...+.+.+.....+..
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~- 82 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-
Confidence 446799999999999999999999864 1111 00122233332233333
Q ss_pred CeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhh---HH---HHHHHHHHHHHhcCCCCCCCCc-EEEEeeC
Q 028654 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS---FD---NLNNWREEFLIQASPSDPENFP-FVVLGNK 126 (206)
Q Consensus 54 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~p-viiv~nK 126 (206)
....+.||||||+++|...+..++..+|++|+|+|+++... ++ ....++..+ ... ++| +++|+||
T Consensus 83 -~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~~------~v~~iivviNK 154 (458)
T 1f60_A 83 -PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FTL------GVRQLIVAVNK 154 (458)
T ss_dssp -SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HHT------TCCEEEEEEEC
T ss_pred -CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HHc------CCCeEEEEEEc
Confidence 33689999999999999989999999999999999986531 10 111222212 111 555 8999999
Q ss_pred CCCCCCCcc--eecHHHHHHHHHHcC----CCcEEEeeccCCCCHHHH
Q 028654 127 TDVDGGNSR--VVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAA 168 (206)
Q Consensus 127 ~D~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~l 168 (206)
+|+.+.... ....+++..++...+ ..+++++||++|.|+.++
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 999742111 123345555555554 278999999999998754
No 166
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.85 E-value=1.9e-21 Score=137.83 Aligned_cols=160 Identities=17% Similarity=0.144 Sum_probs=99.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc----------ccccccc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLGVA 76 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~ 76 (206)
...+|+++|++|+|||||++++.+..+.....++.+.......+.+.+ .+.+|||||... +......
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 457899999999999999999988764333334444333333333333 567899999632 2222223
Q ss_pred ce---ecCcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcC-
Q 028654 77 FY---RGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG- 150 (206)
Q Consensus 77 ~~---~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~- 150 (206)
++ ..++++++++|+++..+... +..|+.. .+.|+++|+||+|+.....++...+.+..++....
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~----------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~ 171 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD----------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG 171 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH----------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH----------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence 33 46899999999987654332 2223221 16789999999998754222222345555555543
Q ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654 151 NIPYFETSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 151 ~~~~~~~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
...++++|++++.++++++++|.+.+.+.
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 35788999999999999999999877553
No 167
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=4.3e-22 Score=151.65 Aligned_cols=166 Identities=16% Similarity=0.248 Sum_probs=87.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcc--------cccceeeEEEEEEeCCeEEEEEEeeCCCc-------cc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYK--------ATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ER 69 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~ 69 (206)
...++|+|+|++|+|||||+++|++.... .... ++.+.......+...+..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 45789999999999999999998765332 2211 33333333333344566678999999997 55
Q ss_pred cccccc-------cceec-------------CcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654 70 FQSLGV-------AFYRG-------------ADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTD 128 (206)
Q Consensus 70 ~~~~~~-------~~~~~-------------~d~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D 128 (206)
+..... .++.. +|+++|+++.+ ..++..+. .|+..+ . .+.|+|+|+||+|
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~----~~~piIlV~NK~D 185 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----H----NKVNIVPVIAKAD 185 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----C----S-SCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----c----cCCCEEEEEECCC
Confidence 555443 33332 24566666542 22333332 333322 2 2789999999999
Q ss_pred CCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~ 182 (206)
+..........+.+..++...+ ++++++||+++.+ ++.|.++.+.+.+..|.
T Consensus 186 l~~~~ev~~~k~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 186 TLTLKERERLKKRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKASIPF 237 (361)
T ss_dssp SSCHHHHHHHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred CCCHHHHHHHHHHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence 9754111111134555554444 7899999999998 88888888888776654
No 168
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.84 E-value=3.2e-21 Score=161.81 Aligned_cols=165 Identities=14% Similarity=0.075 Sum_probs=109.4
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCC-------CCC-------CcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRK-------FSN-------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 70 (206)
....++|+++|++++|||||+++|.+.. +.. ....+.+.++....+.+......+.||||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3457899999999999999999998631 000 00111222222222233334467899999999999
Q ss_pred ccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcc-eecHHHHHHHHHH
Q 028654 71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSR-VVSEKKAKAWCAS 148 (206)
Q Consensus 71 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~~~~~~~~ 148 (206)
...+...+..+|++|+|+|+++....+. ..++..+... ++| +++|+||+|+.+.... ....+++..+...
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l-------gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~ 444 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV-------GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ 444 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH-------TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc-------CCCeEEEEEeecccccchhhHHHHHHHHHHHHHh
Confidence 9888889999999999999997543222 2333333322 678 7899999999853111 1223455566655
Q ss_pred cC----CCcEEEeeccCC--------CCHHHHHHHHHHHHh
Q 028654 149 KG----NIPYFETSAKEG--------FNVEAAFECIAKNAL 177 (206)
Q Consensus 149 ~~----~~~~~~~s~~~~--------~~i~~l~~~i~~~~~ 177 (206)
.+ ..+++++||++| .|+.++++.|.+.++
T Consensus 445 ~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 445 YDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 54 378999999999 468888888887665
No 169
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.84 E-value=5.2e-22 Score=159.70 Aligned_cols=163 Identities=17% Similarity=0.180 Sum_probs=88.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCcccccceeeEEEEEEeCC
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFED 54 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (206)
...++|+++|++++|||||+++|++... .....++++.+.....+..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-- 252 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-- 252 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe--
Confidence 4578999999999999999999964210 0111223333333333332
Q ss_pred eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChh---hH---HHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCC
Q 028654 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK---SF---DNLNNWREEFLIQASPSDPENFP-FVVLGNKT 127 (206)
Q Consensus 55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~ 127 (206)
....+.||||||+.+|...+...+..+|++|+|+|+++.. .+ ......+..+ ... ++| +|+|+||+
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~-~~l------gip~iIvviNKi 325 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLL-RAL------GISEIVVSVNKL 325 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHH-HHS------SCCCEEEEEECG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHH-HHc------CCCeEEEEEecc
Confidence 3468899999999999999999999999999999998532 11 0111111111 111 555 99999999
Q ss_pred CCCCCCcc--eecHHHHHHHH-HHcC----CCcEEEeeccCCCCHH--------------HHHHHHHHHHh
Q 028654 128 DVDGGNSR--VVSEKKAKAWC-ASKG----NIPYFETSAKEGFNVE--------------AAFECIAKNAL 177 (206)
Q Consensus 128 D~~~~~~~--~~~~~~~~~~~-~~~~----~~~~~~~s~~~~~~i~--------------~l~~~i~~~~~ 177 (206)
|+.+.... ....+++..+. ...+ .++++++||++|.|+. .|++.|...++
T Consensus 326 Dl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 326 DLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 99753211 11223333443 3333 2479999999999998 67777665443
No 170
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.84 E-value=2.2e-20 Score=141.29 Aligned_cols=123 Identities=13% Similarity=0.147 Sum_probs=91.7
Q ss_pred eEEEEEEeeCCCccccccccccceecCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEe
Q 028654 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------VMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124 (206)
Q Consensus 55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~ 124 (206)
..+.+.+|||+|++.++..+..+++.++++|+|+|++ +..++.....|+..+.... ..++.|+++|+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~---~~~~~piiLvg 257 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP---CFEKTSFMLFL 257 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG---GGSSCEEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc---ccCCCeEEEEE
Confidence 5689999999999999999999999999999999998 6778888888887775432 12378999999
Q ss_pred eCCCCCCCCc-------------------ceecHHHHHHHHHH---------------cCCCcEEEeeccCCCCHHHHHH
Q 028654 125 NKTDVDGGNS-------------------RVVSEKKAKAWCAS---------------KGNIPYFETSAKEGFNVEAAFE 170 (206)
Q Consensus 125 nK~D~~~~~~-------------------~~~~~~~~~~~~~~---------------~~~~~~~~~s~~~~~~i~~l~~ 170 (206)
||+|+..... .....++...++.. .....+++|||+++.|++++|+
T Consensus 258 NK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~ 337 (354)
T 2xtz_A 258 NKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFK 337 (354)
T ss_dssp ECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHH
Confidence 9999743100 00124555555332 1223468999999999999999
Q ss_pred HHHHHHhhcC
Q 028654 171 CIAKNALKNE 180 (206)
Q Consensus 171 ~i~~~~~~~~ 180 (206)
++.+.+.+..
T Consensus 338 ~v~~~I~~~~ 347 (354)
T 2xtz_A 338 LVDETLRRRN 347 (354)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.84 E-value=1.1e-21 Score=154.23 Aligned_cols=158 Identities=18% Similarity=0.208 Sum_probs=89.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCC-----------------------------CcccccceeeEEEEEEeCC
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRK--FSN-----------------------------QYKATIGADFLTKEVQFED 54 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 54 (206)
...++|+++|+.++|||||+++|+... +.. +...+.+.+.....+...+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 456899999999999999999997421 110 0011222222222333333
Q ss_pred eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChh---hHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCC
Q 028654 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK---SFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVD 130 (206)
Q Consensus 55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~ 130 (206)
..+.||||||+++|...+...+..+|++|+|+|+++.. +|+....+...+..... .++| +++|+||+|+.
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEP 194 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTST
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECccCC
Confidence 67899999999999999999999999999999999752 22111111111111111 1667 99999999996
Q ss_pred CCCc----ceecHHHHHHHHHHc-C-----CCcEEEeeccCCCCHHHHH
Q 028654 131 GGNS----RVVSEKKAKAWCASK-G-----NIPYFETSAKEGFNVEAAF 169 (206)
Q Consensus 131 ~~~~----~~~~~~~~~~~~~~~-~-----~~~~~~~s~~~~~~i~~l~ 169 (206)
.... .....+++..++... + ..+++++||++|.|+.+++
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 5321 112233455555544 2 3679999999999998765
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.83 E-value=2.1e-21 Score=144.76 Aligned_cols=160 Identities=15% Similarity=0.221 Sum_probs=98.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCC------cccc----------------------ccee--------------
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQ------YKAT----------------------IGAD-------------- 44 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~------~~~~----------------------~~~~-------------- 44 (206)
..++|+|+|.+|+|||||+|+|++..+.+. ..++ ++.+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 467999999999999999999999876421 1121 0000
Q ss_pred -------eEEEEEEe-CCeEEEEEEeeCCCcc-------------ccccccccceecCcEEE-EEEECCChhhHHHHHHH
Q 028654 45 -------FLTKEVQF-EDRLFTLQIWDTAGQE-------------RFQSLGVAFYRGADCCV-LVYDVNVMKSFDNLNNW 102 (206)
Q Consensus 45 -------~~~~~~~~-~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~vi-~v~d~~~~~~~~~~~~~ 102 (206)
.....+.+ ......+.||||||.. .+......++..++.++ +|+|+++..+......+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 00000000 0012578999999954 23445556777888666 79999874433332233
Q ss_pred HHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH--cCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028654 103 REEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS--KGNIPYFETSAKEGFNVEAAFECIAKN 175 (206)
Q Consensus 103 ~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~i~~l~~~i~~~ 175 (206)
...+ .. .+.|+++|+||+|+.+... ...+.++..... .+..+++++||+++.|+++++++|.+.
T Consensus 185 ~~~~----~~---~~~~~i~V~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 185 AKEV----DP---QGQRTIGVITKLDLMDEGT--DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHH----CT---TCSSEEEEEECGGGSCTTC--CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHh----CC---CCCeEEEEEEccccCCCCc--hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 3333 21 2679999999999976422 122222210001 122467889999999999999999874
No 173
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.83 E-value=1.1e-19 Score=137.89 Aligned_cols=122 Identities=12% Similarity=0.114 Sum_probs=87.9
Q ss_pred EEEEEeeCCCccccccccccceecCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeC
Q 028654 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV----------MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK 126 (206)
+.+.+|||+|++.++..+..++.+++++|+|+|+++ ..++.....|+..+.... ...+.|+++++||
T Consensus 201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~---~~~~~piILv~NK 277 (362)
T 1zcb_A 201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR---VFSNVSIILFLNK 277 (362)
T ss_dssp EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG---GGTTSEEEEEEEC
T ss_pred eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch---hhCCCCEEEEEEC
Confidence 789999999999999999999999999999999998 667888777877776431 1237899999999
Q ss_pred CCCCCCC--------------cceecHHHHHHHHH-------H---cCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 127 TDVDGGN--------------SRVVSEKKAKAWCA-------S---KGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 127 ~D~~~~~--------------~~~~~~~~~~~~~~-------~---~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
+|+.... ......++...++. . ...+.+++|||+++.|++++|+++.+.+.+..-
T Consensus 278 ~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 278 TDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL 356 (362)
T ss_dssp HHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence 9985210 01145566666542 1 123678999999999999999999998876543
No 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.82 E-value=3.3e-19 Score=145.94 Aligned_cols=119 Identities=19% Similarity=0.227 Sum_probs=83.6
Q ss_pred ccceeeEEEEEcCCCCCHHHHHHHHhcCC--CC------C----------CcccccceeeEEEEEEeCCeEEEEEEeeCC
Q 028654 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRK--FS------N----------QYKATIGADFLTKEVQFEDRLFTLQIWDTA 65 (206)
Q Consensus 4 ~~~~~~~i~viG~~~~GKStli~~l~~~~--~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 65 (206)
......+|+++|++|+|||||+++|+... +. . ......+.......+.+.+ ..+.|||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTP 85 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTP 85 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECc
Confidence 34568899999999999999999998421 10 0 0011222222233333443 688999999
Q ss_pred CccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 66 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
|+.++...+..++..+|++|+|+|+++.........|.. +... ++|+++|+||+|+...
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~-------~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY-------KVPRIAFANKMDKTGA 144 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT-------TCCEEEEEECTTSTTC
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc-------CCCEEEEEECCCcccC
Confidence 999998888999999999999999998777666555543 3221 7799999999998764
No 175
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.81 E-value=5.5e-19 Score=136.12 Aligned_cols=164 Identities=19% Similarity=0.140 Sum_probs=112.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc----ccccccc---eecCc
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSLGVAF---YRGAD 82 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~d 82 (206)
.|+++|++|+|||||++++.+........+.++.......+.+.+ ...+.+||+||..+. ......+ +..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 578999999999999999988754322233333444444454443 246789999996432 1122222 34689
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC
Q 028654 83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG 162 (206)
Q Consensus 83 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 162 (206)
.+++++|++ ...+..+..+..++..+.... .+.|.++|+||+|+... ...+.+.......+ .+++.+||+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL--~~~P~ILVlNKlDl~~~----~~~~~l~~~l~~~g-~~vi~iSA~~g 309 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPAL--LRRPSLVALNKVDLLEE----EAVKALADALAREG-LAVLPVSALTG 309 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHH--HHSCEEEEEECCTTSCH----HHHHHHHHHHHTTT-SCEEECCTTTC
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHh--hcCCEEEEEECCChhhH----HHHHHHHHHHHhcC-CeEEEEECCCc
Confidence 999999998 566677777776665542100 14689999999998752 23344444444433 78999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCC
Q 028654 163 FNVEAAFECIAKNALKNEPQ 182 (206)
Q Consensus 163 ~~i~~l~~~i~~~~~~~~~~ 182 (206)
.|+++++++|.+.+.+.++.
T Consensus 310 ~gi~eL~~~i~~~l~~~~~~ 329 (416)
T 1udx_A 310 AGLPALKEALHALVRSTPPP 329 (416)
T ss_dssp TTHHHHHHHHHHHHHTSCCC
T ss_pred cCHHHHHHHHHHHHHhcccc
Confidence 99999999999999876653
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.81 E-value=4.2e-19 Score=129.90 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=85.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccccccee-----
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR----- 79 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~----- 79 (206)
+..++|+++|.+|+|||||+|+|++..+. ....+..+.......+...+ ..+.+|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 45799999999999999999999988753 23333334444455555555 58899999998877655544443
Q ss_pred ----cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 80 ----GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 80 ----~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
.+|++++|++++..........|+..+...+... ...|+++|+||+|+...
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKE--IWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECTTCCCS
T ss_pred HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchh--hhcCEEEEEeCcccCCC
Confidence 7899999999876442222245666666554321 12489999999998643
No 177
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.81 E-value=5.2e-20 Score=137.85 Aligned_cols=120 Identities=14% Similarity=0.161 Sum_probs=91.4
Q ss_pred EEEEEEeeCCCccccccccccceecCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEee
Q 028654 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125 (206)
Q Consensus 56 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~n 125 (206)
.+.+.+||++|++.++..+..+++.++++|+|+|++ +..++.....|+..+..... ..+.|+++++|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~---~~~~piiLv~N 236 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF---LKGAVKLIFLN 236 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG---GTTSEEEEEEE
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc---cCCCeEEEEEE
Confidence 478999999999999999999999999999999998 66777777777777654322 23789999999
Q ss_pred CCCCCCCC-------------cceecHHHHHHHHH-Hc-------------------------CCCcEEEeeccCCCCHH
Q 028654 126 KTDVDGGN-------------SRVVSEKKAKAWCA-SK-------------------------GNIPYFETSAKEGFNVE 166 (206)
Q Consensus 126 K~D~~~~~-------------~~~~~~~~~~~~~~-~~-------------------------~~~~~~~~s~~~~~~i~ 166 (206)
|+|+.... ......++...+.. .. ..+.+++|||+++.+++
T Consensus 237 K~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~ 316 (340)
T 4fid_A 237 KMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIK 316 (340)
T ss_dssp CHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHH
T ss_pred CchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHH
Confidence 99975310 00113444443332 22 23678999999999999
Q ss_pred HHHHHHHHHHhh
Q 028654 167 AAFECIAKNALK 178 (206)
Q Consensus 167 ~l~~~i~~~~~~ 178 (206)
.+|..+.+.+++
T Consensus 317 ~vF~~v~~~Il~ 328 (340)
T 4fid_A 317 RVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999887
No 178
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=9.9e-19 Score=143.17 Aligned_cols=166 Identities=13% Similarity=0.158 Sum_probs=105.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEE-------EEEEe-------------------------
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLT-------KEVQF------------------------- 52 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~-------~~~~~------------------------- 52 (206)
...++|+|+|.+|+|||||+|+|++..+.. ...+++...... ....+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 357899999999999999999999887542 333333110000 01101
Q ss_pred ---------------------CCeE--EEEEEeeCCCccc---cccccccceecCcEEEEEEECCChhhHHHHHHHHHHH
Q 028654 53 ---------------------EDRL--FTLQIWDTAGQER---FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEF 106 (206)
Q Consensus 53 ---------------------~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~ 106 (206)
.... ..+.||||||... .......++..+|++++|+|+++..+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 0000 2588999999544 3345567788999999999999877766655443332
Q ss_pred HHhcCCCCCCCCcEEEEeeCCCCCCCCcc-eec---HH----HHHHH----HHHc--------CCCcEEEeecc------
Q 028654 107 LIQASPSDPENFPFVVLGNKTDVDGGNSR-VVS---EK----KAKAW----CASK--------GNIPYFETSAK------ 160 (206)
Q Consensus 107 ~~~~~~~~~~~~pviiv~nK~D~~~~~~~-~~~---~~----~~~~~----~~~~--------~~~~~~~~s~~------ 160 (206)
. . .+.|+++|+||+|+...... ... .+ .+... .... ...+++++||+
T Consensus 227 ~----~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~ 299 (695)
T 2j69_A 227 K----G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR 299 (695)
T ss_dssp T----T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred H----h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence 1 1 15689999999998643100 000 01 11111 1111 12479999999
Q ss_pred --------CCCCHHHHHHHHHHHHhh
Q 028654 161 --------EGFNVEAAFECIAKNALK 178 (206)
Q Consensus 161 --------~~~~i~~l~~~i~~~~~~ 178 (206)
++.|+++++..|.+.+.+
T Consensus 300 ~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 300 LKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred ccCchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887754
No 179
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.79 E-value=6.5e-20 Score=140.96 Aligned_cols=85 Identities=14% Similarity=0.081 Sum_probs=48.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEE---------------------eCC-eEEEEEEeeCCC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQ---------------------FED-RLFTLQIWDTAG 66 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G 66 (206)
++|+++|.+|+|||||+|+|++........+.++......... +.+ ....+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 4899999999999999999998764333333333332222211 122 246899999999
Q ss_pred cccc----c---cccccceecCcEEEEEEECCCh
Q 028654 67 QERF----Q---SLGVAFYRGADCCVLVYDVNVM 93 (206)
Q Consensus 67 ~~~~----~---~~~~~~~~~~d~vi~v~d~~~~ 93 (206)
.... . ......++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 6431 1 2223456889999999999875
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.79 E-value=1.8e-18 Score=137.41 Aligned_cols=117 Identities=19% Similarity=0.241 Sum_probs=78.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------------------cccccceeeEEEEEEeCCeEEEEEEee
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ----------------------YKATIGADFLTKEVQFEDRLFTLQIWD 63 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D 63 (206)
...++|+++|++++|||||+++|+....... ...+.+.......+.+.+ ..+.+||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 3578999999999999999999986321100 011111111122233333 6889999
Q ss_pred CCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 64 TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 64 ~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
|||+.++...+..++..+|++|+|+|+++...... .. +...+.. .++|+++|+||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~----~~~~~~~---~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RK----LMEVTRL---RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HH----HHHHHTT---TTCCEEEEEECTTSCCS
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HH----HHHHHHH---cCCCEEEEEcCcCCccc
Confidence 99999998888889999999999999987543222 22 2222222 27899999999999764
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.79 E-value=1.3e-18 Score=141.95 Aligned_cols=115 Identities=16% Similarity=0.143 Sum_probs=80.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc------------------ccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY------------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 67 (206)
....+|+++|+.|+|||||+++|.+....... ....+.......+... .+.+.+|||||+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCCc
Confidence 34678999999999999999999843321000 1112222222333333 478899999999
Q ss_pred cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 130 (206)
.++......++..+|++++|+|+++...... ..++..+... +.|+++|+||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~-------~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL-------GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT-------TCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc-------cCCEEEEecCCchh
Confidence 9998888899999999999999887544333 2333433321 67999999999987
No 182
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.79 E-value=1.1e-19 Score=136.49 Aligned_cols=115 Identities=8% Similarity=0.084 Sum_probs=70.2
Q ss_pred EEEEEeeCCCccc-------------cccccccceecCcEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCCCCCcEEE
Q 028654 57 FTLQIWDTAGQER-------------FQSLGVAFYRGADCCVLVYDVNVMKSF-DNLNNWREEFLIQASPSDPENFPFVV 122 (206)
Q Consensus 57 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pvii 122 (206)
..+.||||||... +......++..+|++++|+|.++.... .....+...+ .. .+.|+++
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~----~~---~~~~~i~ 203 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV----DP---EGKRTIG 203 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH----CS---SCSSEEE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh----CC---CCCcEEE
Confidence 4689999999643 344555678899999999997432211 1111222222 21 2679999
Q ss_pred EeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee---ccC---CCCHHHHHHHHHHHHhhcCC
Q 028654 123 LGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS---AKE---GFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 123 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~---~~~i~~l~~~i~~~~~~~~~ 181 (206)
|+||+|+..... ...+.+....... ...+++++ +.+ +.|+.++++.+.+.+...++
T Consensus 204 v~NK~Dl~~~~~--~~~~~~~~~~~~~-~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~ 265 (315)
T 1jwy_B 204 VITKLDLMDKGT--DAMEVLTGRVIPL-TLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI 265 (315)
T ss_dssp EEECTTSSCSSC--CCHHHHTTSSSCC-TTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred EEcCcccCCcch--HHHHHHhCCCccC-CCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence 999999986532 1222222100011 13455554 445 78999999999998877655
No 183
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.79 E-value=1.3e-19 Score=134.83 Aligned_cols=165 Identities=16% Similarity=0.259 Sum_probs=86.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC-CCCCCcc--------cccceeeEEEEEEeCCeEEEEEEeeCCCc-------cc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNR-KFSNQYK--------ATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ER 69 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~ 69 (206)
...++|+++|++|+|||||+++|++. .+..... ++.............+....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34689999999999999999998875 3332221 11111111222222344568999999997 44
Q ss_pred cccccc-------ccee-------------cCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654 70 FQSLGV-------AFYR-------------GADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTD 128 (206)
Q Consensus 70 ~~~~~~-------~~~~-------------~~d~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D 128 (206)
+..... .++. .+++++++.+++.. +++... .++..+ .. +.++++|+||+|
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~l----~~----~~~iilV~~K~D 166 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAI----HN----KVNIVPVIAKAD 166 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHHH----TT----TSCEEEEECCGG
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHHH----Hh----cCCEEEEEEeCC
Confidence 443332 2222 23456666665421 122211 222222 21 568999999999
Q ss_pred CCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
+..........+++..++...+ ++++++||+++ +++++|.++.+.+.+..|
T Consensus 167 l~~~~e~~~~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 167 TLTLKERERLKKRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTT-CCCCCCC----------CHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 9753222234456677777776 89999999999 999999999999876554
No 184
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.78 E-value=8.1e-18 Score=137.91 Aligned_cols=119 Identities=18% Similarity=0.100 Sum_probs=82.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------------cccccceeeEEEEEEeC-----CeEEEEEEe
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRK--FSNQ----------------YKATIGADFLTKEVQFE-----DRLFTLQIW 62 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~--~~~~----------------~~~~~~~~~~~~~~~~~-----~~~~~~~i~ 62 (206)
...++|+++|+.++|||||+++|+... +... .....+.......+.+. +..+.+.||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 457899999999999999999997531 1100 01112222222223332 234789999
Q ss_pred eCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 63 D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
||||+.+|...+..+++.+|++|+|+|+++.........| ..... .++|+++|+||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~-------~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK-------YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH-------cCCCEEEEEeCCCcccc
Confidence 9999999988888999999999999999986554443333 22221 17799999999998754
No 185
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.78 E-value=6.2e-18 Score=138.48 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=82.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc--CCCCC----------------CcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVN--RKFSN----------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 67 (206)
....+|+++|++|+|||||+++|+. +.+.. ...+..+.......+.+.+ ..+.||||||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence 4578999999999999999999985 22110 0011222222223344443 67899999999
Q ss_pred cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
.++......+++.+|++++|+|+++..+......|. .+... +.|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~-------~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY-------GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT-------TCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc-------CCCEEEEEECCCcccc
Confidence 999888888999999999999999876666554443 33321 7799999999999764
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.77 E-value=2.9e-19 Score=136.46 Aligned_cols=157 Identities=11% Similarity=0.156 Sum_probs=97.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEE--------------------------------------
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTK-------------------------------------- 48 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 48 (206)
...+|+|+|.+|||||||+|+|.+..+.+......+......
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 345999999999999999999999876432222221110000
Q ss_pred --------------EEEe-CCeEEEEEEeeCCCcccc-------------ccccccceecCcEEEEEEECCChhhHHHHH
Q 028654 49 --------------EVQF-EDRLFTLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVNVMKSFDNLN 100 (206)
Q Consensus 49 --------------~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~ 100 (206)
.+.+ ......+.+|||||...+ ......++..+|++|+++|..+..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 0000 011235889999997665 445667889999999999876533221 2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHH
Q 028654 101 NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172 (206)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i 172 (206)
.|+..+... .. .+.|+++|+||+|+... .....+....+....+ .+++.+++..+.++++.+..+
T Consensus 191 ~~~~l~~~~-~~---~~~~~i~V~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 191 DAIKISREV-DP---SGDRTFGVLTKIDLMDK--GTDAVEILEGRSFKLK-YPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp HHHHHHHHS-CT---TCTTEEEEEECGGGCCT--TCCSHHHHTTSSSCCS-SCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHHHh-cc---cCCCEEEEEeCCccCCC--cccHHHHHcCcccccc-CCeEEEEECChHHhccCCCHH
Confidence 233322222 22 26799999999999865 2233333333222233 788999999888887655543
No 187
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.77 E-value=6.2e-18 Score=134.91 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=83.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC----------------------CCCcccccceeeEEEEEEeCCeEEEEEEeeC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKF----------------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 64 (206)
+..+|+|+|+.++|||||..+|+.... ..+...+.+.......+.+.+ ..+.|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 467999999999999999999863211 123333444444445555655 67889999
Q ss_pred CCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC
Q 028654 65 AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN 133 (206)
Q Consensus 65 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~ 133 (206)
||+.+|.......++-+|++|+|+|+...-..+...-| .....+ ++|+++++||+|....+
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~-------~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR-------ATPVMTFVNKMDREALH 168 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT-------TCCEEEEEECTTSCCCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh-------CCceEEEEecccchhcc
Confidence 99999999999999999999999999975544443344 333222 88999999999987654
No 188
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.77 E-value=1.3e-17 Score=122.49 Aligned_cols=121 Identities=17% Similarity=0.146 Sum_probs=79.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccccc---------
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVA--------- 76 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~--------- 76 (206)
..++|+++|.+|+|||||+|+|++..+. ....+..+...........+ ..+.+|||||..++......
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 4789999999999999999999987753 22222333333333333333 67899999997665432221
Q ss_pred ceecCcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 77 FYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 77 ~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
....+|++++|+|++... +.. ...|+..+...+... ...|+++|+||+|+.+.
T Consensus 116 ~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~--~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCCG
T ss_pred hcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcc--cccCEEEEEECcccCCc
Confidence 124699999999987532 222 245666665543210 02589999999998754
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.73 E-value=1.8e-19 Score=137.14 Aligned_cols=159 Identities=14% Similarity=0.188 Sum_probs=91.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc------cccc----------------------cee--------------
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY------KATI----------------------GAD-------------- 44 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~------~~~~----------------------~~~-------------- 44 (206)
...+|+|+|.+|+|||||+|+|++..+.+.. .++. +.+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999998764211 1210 000
Q ss_pred -------eEEEEEEeC-CeEEEEEEeeCCCcc-------------ccccccccceecCc-EEEEEEECCChhhHHHHHHH
Q 028654 45 -------FLTKEVQFE-DRLFTLQIWDTAGQE-------------RFQSLGVAFYRGAD-CCVLVYDVNVMKSFDNLNNW 102 (206)
Q Consensus 45 -------~~~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d-~vi~v~d~~~~~~~~~~~~~ 102 (206)
.....+.+. .....+.||||||.. .+......++..++ +++++.|++..........+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 000001110 112578999999953 23344555665555 55556666542221111123
Q ss_pred HHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH--HHHHcCCCcEEEeeccCCCCHHHHHHHHHH
Q 028654 103 REEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA--WCASKGNIPYFETSAKEGFNVEAAFECIAK 174 (206)
Q Consensus 103 ~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~ 174 (206)
+..+ .. .+.|+++|+||+|+.+... ...+.++. +....+..+++++||+++.|++++++.+.+
T Consensus 190 ~~~~----~~---~~~~~i~V~NK~Dl~~~~~--~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEV----DP---QGQRTIGVITKLDLMDEGT--DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHH----CT---TCTTEEEEEECGGGSCTTC--CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHh----Cc---CCCceEEEeccccccCcch--hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2222 22 2679999999999976422 11121110 000112245788999999999999999877
No 190
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=5.2e-18 Score=130.81 Aligned_cols=164 Identities=15% Similarity=0.171 Sum_probs=78.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc--------ccccceeeEEEEEEeCCeEEEEEEeeCCCccccc------
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------ 71 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------ 71 (206)
...++|+++|++|+|||||++.|++..+.... .++.........+...+....+++||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34678999999999999999999987653111 1111111111111223334578999999965421
Q ss_pred -c------------------ccccceecCc--EEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654 72 -S------------------LGVAFYRGAD--CCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (206)
Q Consensus 72 -~------------------~~~~~~~~~d--~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 129 (206)
. ....++..++ +++|+.+++. .++... ..|+..+. .+.|+|+|+||+|+
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~--------~~v~iIlVinK~Dl 179 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH--------EKVNIIPLIAKADT 179 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT--------TTSEEEEEEESTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh--------ccCcEEEEEEcccC
Confidence 1 1123444444 4555555531 122222 24555442 16799999999999
Q ss_pred CCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
..........+.+..++...+ ++++++|++++.++.+++..+.+.++-.
T Consensus 180 l~~~ev~~~k~~i~~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~iPfa 228 (418)
T 2qag_C 180 LTPEECQQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLPLA 228 (418)
T ss_dssp SCHHHHHHHHHHHHHHHHHHT-CCCCCCC-----------------CCEE
T ss_pred ccHHHHHHHHHHHHHHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhCCcc
Confidence 754211122255666666665 8899999999999999888887765443
No 191
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.72 E-value=4.8e-18 Score=129.31 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=70.0
Q ss_pred EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV 136 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~ 136 (206)
+.+.|+||||... .....+..+|++++|+|+...+....+. ......|+++|+||+|+.......
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~------------~~~~~~p~ivVlNK~Dl~~~~~~~ 236 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK------------KGVLELADIVVVNKADGEHHKEAR 236 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC------------TTSGGGCSEEEEECCCGGGHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH------------HhHhhcCCEEEEECCCCcChhHHH
Confidence 5789999999432 2223457899999999987644332211 011146899999999986431111
Q ss_pred ecHHHHHHHHHHc-----C-CCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654 137 VSEKKAKAWCASK-----G-NIPYFETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 137 ~~~~~~~~~~~~~-----~-~~~~~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
...+++....... . ..+++++||++|.|+++++++|.+.+..
T Consensus 237 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 237 LAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1222222222111 1 3689999999999999999999998765
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.72 E-value=7.6e-18 Score=120.16 Aligned_cols=157 Identities=17% Similarity=0.121 Sum_probs=93.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc------ccccce--------eeEEEEEEe----------------CCeE
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY------KATIGA--------DFLTKEVQF----------------EDRL 56 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~------~~~~~~--------~~~~~~~~~----------------~~~~ 56 (206)
...+|+++|.+|+|||||+++|......... .+..+. ......+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 4578999999999999999999865211100 010000 000111111 1122
Q ss_pred EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV 136 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~ 136 (206)
..+.+|||+|....... +....+.+++|+|+.+.... ...+...+ +.|+++|+||+|+... ..
T Consensus 109 ~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~--~~~~~~~~----------~~~~iiv~NK~Dl~~~--~~ 171 (221)
T 2wsm_A 109 CDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDV--VEKHPEIF----------RVADLIVINKVALAEA--VG 171 (221)
T ss_dssp CSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTH--HHHCHHHH----------HTCSEEEEECGGGHHH--HT
T ss_pred CCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchh--hhhhhhhh----------hcCCEEEEecccCCcc--hh
Confidence 46788999985211111 11246889999998764321 11111111 4689999999998642 11
Q ss_pred ecHHHHHHHHHHcC-CCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654 137 VSEKKAKAWCASKG-NIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 137 ~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
...+++.......+ ..+++++|+++|.|+++++++|.+.+.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 172 ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 23455555544432 478999999999999999999999886544
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.71 E-value=3.1e-16 Score=118.49 Aligned_cols=150 Identities=17% Similarity=0.070 Sum_probs=91.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCe---------------EEEEEEeeCCCccccc-
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERFQ- 71 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~- 71 (206)
.++|+++|.+|+|||||+|+|++........+.++.......+.+.+. ...+.+|||||.....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 478999999999999999999987654333443333333333444432 1478999999976542
Q ss_pred ------cccccceecCcEEEEEEECCCh----------hhHHHHHHHHHHHH----------------------------
Q 028654 72 ------SLGVAFYRGADCCVLVYDVNVM----------KSFDNLNNWREEFL---------------------------- 107 (206)
Q Consensus 72 ------~~~~~~~~~~d~vi~v~d~~~~----------~~~~~~~~~~~~~~---------------------------- 107 (206)
......++.+|++++|+|+++. +.+.++..+..++.
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~ 161 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE 161 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence 1222346889999999999862 23333322222210
Q ss_pred --------HhcC--------------------CCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeec
Q 028654 108 --------IQAS--------------------PSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA 159 (206)
Q Consensus 108 --------~~~~--------------------~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (206)
..+. ......+|+++++|+.|.... .....+.+..++...+ .+++++||
T Consensus 162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~--~n~~~~~v~~~~~~~~-~~~i~~sA 238 (363)
T 1jal_A 162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFE--NNPYLDRVREIAAKEG-AVVVPVCA 238 (363)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSS--SCHHHHHHHHHHHHTT-CEEEEECH
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEeccccccc--ccHHHHHHHHHHHHcC-CCEEEech
Confidence 0000 001224799999999996431 2245666777776666 78999997
Q ss_pred c
Q 028654 160 K 160 (206)
Q Consensus 160 ~ 160 (206)
+
T Consensus 239 ~ 239 (363)
T 1jal_A 239 A 239 (363)
T ss_dssp H
T ss_pred H
Confidence 6
No 194
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.70 E-value=2.5e-17 Score=137.39 Aligned_cols=118 Identities=20% Similarity=0.234 Sum_probs=84.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCC------------CC----CCccccccee--eEEEEEE------------eCC
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRK------------FS----NQYKATIGAD--FLTKEVQ------------FED 54 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~------------~~----~~~~~~~~~~--~~~~~~~------------~~~ 54 (206)
....++|+++|+.++|||||+++|+... +. ....+..+.. .....+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3457899999999999999999998641 10 0111111221 1122222 134
Q ss_pred eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (206)
Q Consensus 55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 130 (206)
..+.+.||||||+.+|...+..+++.+|++|+|+|+++..+.+....|.... . .++|+++|+||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~-------~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G-------ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H-------TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H-------cCCCeEEEEECCCcc
Confidence 4789999999999999999999999999999999999887777655554322 1 167999999999986
No 195
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.70 E-value=1.5e-17 Score=123.80 Aligned_cols=134 Identities=19% Similarity=0.128 Sum_probs=104.0
Q ss_pred HHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChh-hHHHHH
Q 028654 23 SLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-SFDNLN 100 (206)
Q Consensus 23 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~ 100 (206)
+|+.++..+.|. ..+.+|.+..+. ..+..++ .+.+||+ ++++..++..+++++|++|+|+|++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577777777777 778888885443 3332222 6889999 8899999999999999999999999987 688888
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC-CcEEEeeccCCCCHHHHHHHHH
Q 028654 101 NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFETSAKEGFNVEAAFECIA 173 (206)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~l~~~i~ 173 (206)
.|+..+.. .++|+++|+||+|+.+. +. .++...++..... .+++++||+++.|++++|..+.
T Consensus 106 ~~l~~~~~-------~~~piilv~NK~DL~~~--~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEK-------NELETVMVINKMDLYDE--DD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHH-------TTCEEEEEECCGGGCCH--HH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHH-------CCCCEEEEEeHHHcCCc--hh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 99887654 17899999999999753 22 1445555555432 6899999999999999998764
No 196
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.67 E-value=5.5e-18 Score=128.52 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=62.3
Q ss_pred EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV 136 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~ 136 (206)
+.+.|+||+|.... .......+|++++|+|++.......+.. .+ ...|.++|+||+|+.+..
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i---------l~~~~ivVlNK~Dl~~~~--- 228 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI---------IEMADLVAVTKSDGDLIV--- 228 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------------CCSCSEEEECCCSGGGHH---
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH---------HhcCCEEEEeeecCCCch---
Confidence 46789999995321 1234568999999999986432221111 11 145789999999986321
Q ss_pred ecHHHHHHHHHH---------cCCCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654 137 VSEKKAKAWCAS---------KGNIPYFETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 137 ~~~~~~~~~~~~---------~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
........+... ....+++++|++++.|+++++++|.+.+..
T Consensus 229 ~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 229 PARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 101112222111 113578999999999999999999987643
No 197
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.67 E-value=2e-17 Score=134.42 Aligned_cols=166 Identities=16% Similarity=0.180 Sum_probs=109.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC--CC----------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRK--FS----------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 69 (206)
..+|+|+|+.++|||||..+|+... .. .+...+.+.......+.+. ...+.|+||||+.+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~--~~~iNlIDTPGH~D 79 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE--NTKVNIIDTPGHMD 79 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS--SCBCCCEECCCSSS
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC--CEEEEEEECCCcHH
Confidence 3589999999999999999986321 10 0111122222222223333 36788999999999
Q ss_pred cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHH--------
Q 028654 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKK-------- 141 (206)
Q Consensus 70 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~-------- 141 (206)
|.......++-+|++|+|+|+...-..+...-| ...... ++|.++++||+|....+......+.
T Consensus 80 F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~-------~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 80 FLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM-------GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEI 151 (638)
T ss_dssp THHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH-------TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc-------CCCeEEEEeccccccCCHHHHHHHHHHHhCCCc
Confidence 999999999999999999999874433332233 333332 7899999999998765321110000
Q ss_pred ---------------------------------HHH------------------HHHHcCCCcEEEeeccCCCCHHHHHH
Q 028654 142 ---------------------------------AKA------------------WCASKGNIPYFETSAKEGFNVEAAFE 170 (206)
Q Consensus 142 ---------------------------------~~~------------------~~~~~~~~~~~~~s~~~~~~i~~l~~ 170 (206)
.+. ........|++..||+++.|++.|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd 231 (638)
T 3j25_A 152 VIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIE 231 (638)
T ss_dssp CCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHH
T ss_pred cccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhh
Confidence 000 01112236788899999999999999
Q ss_pred HHHHHHhhcCCCC
Q 028654 171 CIAKNALKNEPQE 183 (206)
Q Consensus 171 ~i~~~~~~~~~~~ 183 (206)
.|.+.++......
T Consensus 232 ~i~~~~p~p~~~~ 244 (638)
T 3j25_A 232 VITNKFYSSTHRG 244 (638)
T ss_dssp HHHHSCCCSGGGS
T ss_pred hhhccccCcccch
Confidence 9998776644433
No 198
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.67 E-value=2.1e-15 Score=124.08 Aligned_cols=119 Identities=17% Similarity=0.137 Sum_probs=81.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCC--------------C----CCCcccccceeeEEEEEEeCC-----eEEEEEEe
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRK--------------F----SNQYKATIGADFLTKEVQFED-----RLFTLQIW 62 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~--------------~----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~ 62 (206)
.+..+|+|+|+.++|||||..+|+... + ..+.....+.......+.+.+ ..+.+.|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 457899999999999999999986321 0 112233333333334444432 35789999
Q ss_pred eCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 63 D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 132 (206)
||||+.+|.......++-+|++|+|+|+...-..+...-| ...... ++|.++++||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~-------~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY-------GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH-------TCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc-------CCCeEEEEccccccCc
Confidence 9999999999999999999999999999875443333333 333322 7899999999998654
No 199
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.66 E-value=7.9e-17 Score=131.62 Aligned_cols=165 Identities=15% Similarity=0.161 Sum_probs=98.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCC-Cccccccee-----------------------------------------
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGAD----------------------------------------- 44 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~----------------------------------------- 44 (206)
...+|+|+|.+++|||||+|+|++..+.+ ....++...
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 45799999999999999999999987632 111111100
Q ss_pred ---------eEEEEEEeCCeEEEEEEeeCCCccc-------------cccccccce-ecCcEEEEEEECCChhhHHHHHH
Q 028654 45 ---------FLTKEVQFEDRLFTLQIWDTAGQER-------------FQSLGVAFY-RGADCCVLVYDVNVMKSFDNLNN 101 (206)
Q Consensus 45 ---------~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~vi~v~d~~~~~~~~~~~~ 101 (206)
.....+.. .....+.|+||||-.. +......++ ..+|++++|+|++..........
T Consensus 130 g~~~~is~~~i~l~I~~-P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYS-PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEE-TTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred CCCCcccccceEEEEec-CCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 00000100 0112578999999432 222333344 57899999999986432222222
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH-H-HHHcCCCcEEEeeccCCCCHHHHHHHHHHH---H
Q 028654 102 WREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA-W-CASKGNIPYFETSAKEGFNVEAAFECIAKN---A 176 (206)
Q Consensus 102 ~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~---~ 176 (206)
+...+. . .+.|+++|+||+|+...... ..+.... . ....+..+++++||+++.|+++|++.|.+. +
T Consensus 209 ll~~L~----~---~g~pvIlVlNKiDlv~~~~~--~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ff 279 (772)
T 3zvr_A 209 IAKEVD----P---QGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFF 279 (772)
T ss_dssp HHHHHC----T---TCSSEEEEEECTTSSCTTCC--SHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHH
T ss_pred HHHHHH----h---cCCCEEEEEeCcccCCcchh--hHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhc
Confidence 333332 1 16799999999999865322 1111110 0 001123467889999999999999999873 4
Q ss_pred hhcCC
Q 028654 177 LKNEP 181 (206)
Q Consensus 177 ~~~~~ 181 (206)
.+.++
T Consensus 280 pe~P~ 284 (772)
T 3zvr_A 280 LSHPS 284 (772)
T ss_dssp HHCTT
T ss_pred cCCcc
Confidence 44444
No 200
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.66 E-value=3.4e-16 Score=119.81 Aligned_cols=128 Identities=12% Similarity=0.091 Sum_probs=96.4
Q ss_pred EEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhcCCCCCCC
Q 028654 48 KEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV----------MKSFDNLNNWREEFLIQASPSDPEN 117 (206)
Q Consensus 48 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (206)
..+.+.+ +.+.+|||+|++.++..+..+++.++++|+|+|+++ ..++.....|+..+.... ...+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~---~~~~ 284 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR---WLRT 284 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT---TCSS
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc---cCCC
Confidence 3445554 789999999999999999999999999999999998 788888888888876532 2237
Q ss_pred CcEEEEeeCCCCCCCCc----------------------------ceecHHHHHHHH-----HHc-------CCCcEEEe
Q 028654 118 FPFVVLGNKTDVDGGNS----------------------------RVVSEKKAKAWC-----ASK-------GNIPYFET 157 (206)
Q Consensus 118 ~pviiv~nK~D~~~~~~----------------------------~~~~~~~~~~~~-----~~~-------~~~~~~~~ 157 (206)
.|+++|+||+|+..... .....++...|+ ... ..+.+++|
T Consensus 285 ~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~T 364 (402)
T 1azs_C 285 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT 364 (402)
T ss_dssp CCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEEC
T ss_pred CeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEE
Confidence 89999999999743200 000134444442 211 23567899
Q ss_pred eccCCCCHHHHHHHHHHHHhhcC
Q 028654 158 SAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 158 s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
||+++.|++++|.++.+.+.+..
T Consensus 365 SA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 365 CAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EeecCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999998887653
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.65 E-value=6.4e-16 Score=117.41 Aligned_cols=84 Identities=23% Similarity=0.127 Sum_probs=55.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCC-------------------eEEEEEEeeCCCccc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-------------------RLFTLQIWDTAGQER 69 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~ 69 (206)
++|+++|.+|+|||||+|+|.+........+..+.........+.+ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5899999999999999999997653222223323322222223321 235789999999765
Q ss_pred ccc-------ccccceecCcEEEEEEECCC
Q 028654 70 FQS-------LGVAFYRGADCCVLVYDVNV 92 (206)
Q Consensus 70 ~~~-------~~~~~~~~~d~vi~v~d~~~ 92 (206)
... .....++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 421 22234688999999999985
No 202
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.65 E-value=3e-17 Score=117.44 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=90.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeE------------EEEEEeC-Ce------------------
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFL------------TKEVQFE-DR------------------ 55 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 55 (206)
..++|+++|.+|||||||+++|....+...+.++...++. ...+.++ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999876544323233222211 1111111 10
Q ss_pred -EEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc
Q 028654 56 -LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS 134 (206)
Q Consensus 56 -~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~ 134 (206)
...+.++|++|.-.... .+-...+..+.++|......... .+...+ +.|.++|+||+|+...
T Consensus 117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~----------~~~~iiv~NK~Dl~~~-- 179 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE--KHPGIM----------KTADLIVINKIDLADA-- 179 (226)
T ss_dssp GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT--TCHHHH----------TTCSEEEEECGGGHHH--
T ss_pred CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh--hhhhHh----------hcCCEEEEeccccCch--
Confidence 11455666666211110 11122345567777532111110 001111 4588999999998642
Q ss_pred ceecHHHHHHHHHHc-CCCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654 135 RVVSEKKAKAWCASK-GNIPYFETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 135 ~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
.....+++..++... ...+++++||++|.|++++|++|.+.+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 180 VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 223455666665544 24789999999999999999999988765
No 203
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.64 E-value=1.8e-16 Score=126.58 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=78.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCcccccceeeEEEEE-----EeC-----------------C-----e
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTKEV-----QFE-----------------D-----R 55 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~-----~~~-----------------~-----~ 55 (206)
...++|+|+|.+|+|||||+|+|++..+. ....++++.......- ..+ + .
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 34689999999999999999999998763 2333333211100000 000 0 0
Q ss_pred -E---------EEEEEeeCCCccc-----------cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC
Q 028654 56 -L---------FTLQIWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD 114 (206)
Q Consensus 56 -~---------~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (206)
. ..+.||||||... +......++..+|++++|+|+++.........|+..+..
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~------ 216 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG------ 216 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT------
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh------
Confidence 0 2588999999654 334455677889999999999875433444455544421
Q ss_pred CCCCcEEEEeeCCCCCCC
Q 028654 115 PENFPFVVLGNKTDVDGG 132 (206)
Q Consensus 115 ~~~~pviiv~nK~D~~~~ 132 (206)
.+.|+++|+||+|+...
T Consensus 217 -~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 217 -HEDKIRVVLNKADMVET 233 (550)
T ss_dssp -CGGGEEEEEECGGGSCH
T ss_pred -cCCCEEEEEECCCccCH
Confidence 15789999999999753
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.64 E-value=1.6e-16 Score=120.32 Aligned_cols=106 Identities=13% Similarity=0.130 Sum_probs=65.6
Q ss_pred EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV 136 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~ 136 (206)
+.+.|+||||....... ....+|++++|+|++.......+.. .. .+.|.++|+||+|+.+.....
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~---------~~~p~ivv~NK~Dl~~~~~~~ 213 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL---------MEVADLIVINKDDGDNHTNVA 213 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH---------HHHCSEEEECCCCTTCHHHHH
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh---------hcccCEEEEECCCCCChHHHH
Confidence 57899999996543322 3578999999999975432211111 00 045789999999997531111
Q ss_pred ecHHHHHHHHHHcC------CCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654 137 VSEKKAKAWCASKG------NIPYFETSAKEGFNVEAAFECIAKNAL 177 (206)
Q Consensus 137 ~~~~~~~~~~~~~~------~~~~~~~s~~~~~~i~~l~~~i~~~~~ 177 (206)
...+++.......+ ..+++++||++|.|+++++++|.+.+.
T Consensus 214 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 214 IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11112222222222 357899999999999999999999775
No 205
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.63 E-value=6.2e-15 Score=111.99 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=84.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc-------cccccceec
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFYRG 80 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~ 80 (206)
-.+|+++|.||+|||||+|+|++........+++|.+.....+.+.+ .+++|+||||-.... ......++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 45899999999999999999999877677778888888888888887 567889999943221 122344578
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (206)
Q Consensus 81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 130 (206)
+|++++|+|++++.. .......++..... .....|.++++||.|..
T Consensus 150 ad~il~vvD~~~p~~--~~~~i~~EL~~~~~--~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 150 CNLLFIILDVNKPLH--HKQIIEKELEGVGI--RLNKTPPDILIKKKEKG 195 (376)
T ss_dssp CSEEEEEEETTSHHH--HHHHHHHHHHHTTE--EETCCCCCEEEEECSSS
T ss_pred cCccccccccCccHH--HHHHHHHHHHHhhH--hhccCChhhhhhHhhhh
Confidence 999999999997542 22333333332211 11255888999999964
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.58 E-value=1e-14 Score=106.57 Aligned_cols=116 Identities=13% Similarity=-0.051 Sum_probs=68.8
Q ss_pred EEEEEeeCCCccccccccc------cceecCcEEEEEEECCChhhHHHHHHH---HHHHHHhcCCCCCCCCcEEEEeeCC
Q 028654 57 FTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVNVMKSFDNLNNW---REEFLIQASPSDPENFPFVVLGNKT 127 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~vi~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~pviiv~nK~ 127 (206)
+.+.||||||......... ..+.. +++++++|+............ ....... .+.|+++|+||+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~------~~~p~~iv~NK~ 181 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR------LGATTIPALNKV 181 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH------HTSCEEEEECCG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc------cCCCeEEEEecc
Confidence 4789999999765433211 23456 899999987643222222111 1111111 167899999999
Q ss_pred CCCCCCcceecHHH------HH-H-----------------HHHHcC-CCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654 128 DVDGGNSRVVSEKK------AK-A-----------------WCASKG-NIPYFETSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 128 D~~~~~~~~~~~~~------~~-~-----------------~~~~~~-~~~~~~~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
|+..........+. .. . +....+ ..+++++||+++.|+++++++|.+.+...
T Consensus 182 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 182 DLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC 258 (262)
T ss_dssp GGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence 98753110000110 00 0 112322 24899999999999999999999887653
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.50 E-value=7.5e-14 Score=105.32 Aligned_cols=104 Identities=14% Similarity=0.176 Sum_probs=63.0
Q ss_pred EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV 136 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~ 136 (206)
..+.|+||||..... ......+|.+++++|+...+..+.+... +. ..+.++++||+|+... ..
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~---------~~~~ivvlNK~Dl~~~--~~ 210 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF---------ELADMIAVNKADDGDG--ER 210 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH---------HHCSEEEEECCSTTCC--HH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh---------ccccEEEEEchhccCc--hh
Confidence 578899999954321 1234679999999998643321111111 10 2356788899997542 11
Q ss_pred ecHHHHHHHHHH---cC------CCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654 137 VSEKKAKAWCAS---KG------NIPYFETSAKEGFNVEAAFECIAKNAL 177 (206)
Q Consensus 137 ~~~~~~~~~~~~---~~------~~~~~~~s~~~~~~i~~l~~~i~~~~~ 177 (206)
......+.+... .. ..+++.+|++++.|++++++.|.+.+.
T Consensus 211 ~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 211 RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 122222223221 11 357899999999999999999998764
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.44 E-value=6.8e-13 Score=98.71 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=75.9
Q ss_pred ccccccccccceecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceec-HHHHHH
Q 028654 67 QERFQSLGVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS-EKKAKA 144 (206)
Q Consensus 67 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~-~~~~~~ 144 (206)
++++....+.+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+. .... .++...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-------~~~~~ilV~NK~DL~~~--~~v~~~~~~~~ 136 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-------FKVEPVIVFNKIDLLNE--EEKKELERWIS 136 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-------TTCEEEEEECCGGGCCH--HHHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-------CCCCEEEEEEcccCCCc--cccHHHHHHHH
Confidence 6667777888999999999999999886 78888888886654 17899999999999753 2112 344455
Q ss_pred HHHHcCCCcEEEeeccCCCCHHHHHHHHH
Q 028654 145 WCASKGNIPYFETSAKEGFNVEAAFECIA 173 (206)
Q Consensus 145 ~~~~~~~~~~~~~s~~~~~~i~~l~~~i~ 173 (206)
++...+ .+++++||+++.|++++++.+.
T Consensus 137 ~~~~~g-~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 137 IYRDAG-YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHTT-CEEEECCTTTCTTHHHHHHHTT
T ss_pred HHHHCC-CeEEEEECCCCCCHHHHHhhcc
Confidence 555555 7899999999999999987653
No 209
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.42 E-value=1.5e-13 Score=104.80 Aligned_cols=88 Identities=20% Similarity=0.114 Sum_probs=52.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCe---------------EEEEEEeeCCCcccc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERF 70 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~ 70 (206)
.+.++|+++|.+|+|||||+|+|.+..+.....+++|.......+.+.+. ...+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 34679999999999999999999988765555566666555555555432 235899999996653
Q ss_pred cc-------ccccceecCcEEEEEEECCCh
Q 028654 71 QS-------LGVAFYRGADCCVLVYDVNVM 93 (206)
Q Consensus 71 ~~-------~~~~~~~~~d~vi~v~d~~~~ 93 (206)
.. ....+++.+|++++|+|+++.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 33 345567899999999999754
No 210
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.40 E-value=1.7e-13 Score=94.68 Aligned_cols=112 Identities=10% Similarity=-0.037 Sum_probs=71.7
Q ss_pred CCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-CCCCcEEEEeeCC-CCCCCCcceecHHH
Q 028654 64 TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD-PENFPFVVLGNKT-DVDGGNSRVVSEKK 141 (206)
Q Consensus 64 ~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pviiv~nK~-D~~~~~~~~~~~~~ 141 (206)
.+|+..++..|..|+.++|++|||+|.+|.+-.+ ...-+..+........ ..+.|++|++||. |+.++. ...+
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Am----s~~E 183 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM----PCFY 183 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBC----CHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCC----CHHH
Confidence 3478899999999999999999999999875443 2222233344444332 3588999999995 776543 2233
Q ss_pred HHHHHH---HcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654 142 AKAWCA---SKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (206)
Q Consensus 142 ~~~~~~---~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~ 180 (206)
+..... -...+.+..|||.+|+|+.+-++||.+.+..+.
T Consensus 184 I~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 184 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred HHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 322211 123578999999999999999999998775443
No 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.39 E-value=8.4e-12 Score=95.47 Aligned_cols=86 Identities=20% Similarity=0.174 Sum_probs=62.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCe---------------EEEEEEeeCCCccc-
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER- 69 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~- 69 (206)
+..+++++|++|+|||||+|+|++... .....|+++.......+.+.+. ...+.+||+||...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 457899999999999999999999776 5555666666665666655541 13678999999432
Q ss_pred ------cccccccceecCcEEEEEEECCC
Q 028654 70 ------FQSLGVAFYRGADCCVLVYDVNV 92 (206)
Q Consensus 70 ------~~~~~~~~~~~~d~vi~v~d~~~ 92 (206)
+.......++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22233445678999999999864
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.24 E-value=1.4e-12 Score=94.48 Aligned_cols=111 Identities=10% Similarity=-0.022 Sum_probs=73.5
Q ss_pred CCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-CCCCcEEEEeeC-CCCCCCCcceecHHH
Q 028654 64 TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD-PENFPFVVLGNK-TDVDGGNSRVVSEKK 141 (206)
Q Consensus 64 ~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pviiv~nK-~D~~~~~~~~~~~~~ 141 (206)
.+|+...+..+..|+.++|++|||+|.+|.+-++...++ .++........ ..+.|++|++|| .|+.++.. ..+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL-~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams----~~E 268 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEF-SHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP----CFY 268 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHH-HHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC----HHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHH-HHHHHHhcchhhcCCCeEEEEeCCcccccCCCC----HHH
Confidence 457899999999999999999999999997644321211 22212222111 237899999996 58875432 223
Q ss_pred HHHHHH---HcCCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654 142 AKAWCA---SKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (206)
Q Consensus 142 ~~~~~~---~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~ 179 (206)
+.+... -...+.+..|||.+|+|+.+-++||.+.+..+
T Consensus 269 I~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 269 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 322111 12347899999999999999999999987544
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.19 E-value=2.7e-12 Score=98.03 Aligned_cols=141 Identities=16% Similarity=0.163 Sum_probs=80.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC------CCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc-------cc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR------KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LG 74 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~ 74 (206)
..+|+++|.+|+|||||+|+|++. .......++++... ....+.. .+.++||||-..... ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLES---GATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECST---TCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHH
Confidence 357999999999999999999976 22233344443333 2333333 268899999432211 11
Q ss_pred ccce---ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC
Q 028654 75 VAFY---RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN 151 (206)
Q Consensus 75 ~~~~---~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
...+ +..+.+++++++.....+..+.. + ......+.|+++++||.|.... .......+.+.+..+
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l----~~l~~~~~~~~~v~~k~d~~~~---~~~~~~~~~~~~~~g- 304 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----L----DYIKGGRRSFVCYMANELTVHR---TKLEKADSLYANQLG- 304 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----E----EEEESSSEEEEEEECTTSCEEE---EEGGGHHHHHHHHBT-
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE----E----EEccCCCceEEEEecCCccccc---ccHHHHHHHHHHhcC-
Confidence 1112 56889999999842111111100 0 1111126799999999998753 333444445555555
Q ss_pred CcEEEeeccCCCCH
Q 028654 152 IPYFETSAKEGFNV 165 (206)
Q Consensus 152 ~~~~~~s~~~~~~i 165 (206)
..+.+.++.+..++
T Consensus 305 ~~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 305 ELLSPPSKRYAAEF 318 (369)
T ss_dssp TTBCSSCGGGTTTC
T ss_pred CccCCCCchhhhhc
Confidence 55566665544443
No 214
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.14 E-value=9.7e-11 Score=85.65 Aligned_cols=116 Identities=15% Similarity=0.177 Sum_probs=61.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCc---------ccccceeeEEEEEEeCCeEEEEEEeeCCCccccc-------
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQY---------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------- 71 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------- 71 (206)
.++++++|+.|+|||||+|.|++....... ..+.............+....++++|++|-....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999875322110 0010001101101111122367899999821100
Q ss_pred ---cc------------------cccceecCcEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654 72 ---SL------------------GVAFYRGADCCVLVYDVN-VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (206)
Q Consensus 72 ---~~------------------~~~~~~~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~ 129 (206)
.. ....+..+++.++++|.. .+-...+ ..++..+.. ..++++|++|+|.
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~--------~~~vI~Vi~K~D~ 152 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK--------VVNIIPVIAKADT 152 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT--------TSEEEEEETTGGG
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh--------cCcEEEEEecccc
Confidence 00 011234568899999965 3322222 222333321 3589999999998
Q ss_pred CCC
Q 028654 130 DGG 132 (206)
Q Consensus 130 ~~~ 132 (206)
...
T Consensus 153 lt~ 155 (270)
T 3sop_A 153 MTL 155 (270)
T ss_dssp SCH
T ss_pred CCH
Confidence 754
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.12 E-value=1.4e-10 Score=89.36 Aligned_cols=143 Identities=14% Similarity=0.160 Sum_probs=69.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCc----ccccceeeEEEEEEeCCeEEEEEEeeCCCcccc-------------
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQY----KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------------- 70 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------------- 70 (206)
.++++|+|++|+|||||+|.|.+..+.... .+..............+....++++|++|-...
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 457999999999999999999987543211 111111111111222223347889999983211
Q ss_pred -----cccccc---------ceec--CcE-EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC
Q 028654 71 -----QSLGVA---------FYRG--ADC-CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN 133 (206)
Q Consensus 71 -----~~~~~~---------~~~~--~d~-vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~ 133 (206)
...... .... .|+ ++++.|....-+..+ ..+.+.+. .+.|+|+|+||+|.....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-----ieilk~L~----~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-----LVTMKKLD----SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-----HHHHHHTC----SCSEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-----HHHHHHHh----hCCCEEEEEcchhccchH
Confidence 000111 1112 234 455556554333222 12333332 277999999999987532
Q ss_pred cceecHHHHHHHHHHcCCCcEEEeecc
Q 028654 134 SRVVSEKKAKAWCASKGNIPYFETSAK 160 (206)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (206)
......+.+...... .+++++.+|..
T Consensus 193 E~~~l~~~I~~~L~~-~gi~I~~is~~ 218 (427)
T 2qag_B 193 ELTKFKIKITSELVS-NGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHHHHHHBT-TBCCCCCCC--
T ss_pred HHHHHHHHHHHHHHH-cCCcEEecCCC
Confidence 211112222221112 34777777753
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.06 E-value=1.3e-11 Score=94.15 Aligned_cols=135 Identities=14% Similarity=0.155 Sum_probs=73.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc--------
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFS-------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-------- 73 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------- 73 (206)
.+|+++|.+|+|||||+|+|.+.... ....++++... ..+.+.. .+.++||||-......
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDL--IDIPLDE---ESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CE--EEEESSS---SCEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecce--EEEEecC---CeEEEeCCCcCcHHHHHHHhhHHH
Confidence 57999999999999999999875311 12233333222 2333333 2789999994322211
Q ss_pred cccc--eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC
Q 028654 74 GVAF--YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN 151 (206)
Q Consensus 74 ~~~~--~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
.... .+..+.++++++.........+.. + ......+.|+++++||+|..+ ........+.+.+..+
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~----d~l~~~~~~~~~v~nk~d~~~---~~~~~~~~~~~~~~~g- 303 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR----F----DYVSGGRRAFTCHFSNRLTIH---RTKLEKADELYKNHAG- 303 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----E----EEEESSSEEEEEEECTTSCEE---EEEHHHHHHHHHHHBT-
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceEE----E----EEecCCCceEEEEecCccccc---cccHHHHHHHHHHHhC-
Confidence 1111 256788899998742111111100 0 111112679999999999875 3334444444555555
Q ss_pred CcEEEeecc
Q 028654 152 IPYFETSAK 160 (206)
Q Consensus 152 ~~~~~~s~~ 160 (206)
..+++.++.
T Consensus 304 ~~l~p~~~~ 312 (368)
T 3h2y_A 304 DLLSPPTPE 312 (368)
T ss_dssp TTBCSSCHH
T ss_pred CccCCCchh
Confidence 444544443
No 217
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.02 E-value=3e-09 Score=81.98 Aligned_cols=163 Identities=13% Similarity=0.186 Sum_probs=86.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccc-ceee--EEEEEEeCCeEEEEEEeeCCCcccccccccc-----cee
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATI-GADF--LTKEVQFEDRLFTLQIWDTAGQERFQSLGVA-----FYR 79 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-----~~~ 79 (206)
...++++|++|+|||||+|.+.+......-.-.. +... ...... ......+.++|++|-......... .+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3478999999999999999999843221110000 0000 011111 111125788999994321111111 123
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC---------CCCcceecHHHHHHHHH---
Q 028654 80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD---------GGNSRVVSEKKAKAWCA--- 147 (206)
Q Consensus 80 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~---------~~~~~~~~~~~~~~~~~--- 147 (206)
..+..++ ++...... +. ..+...+... +.|+++|.||.|+. +...+....+.+..+..
T Consensus 148 ~~~~~~~-lS~G~~~k-qr-v~la~aL~~~-------~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 148 EYDFFII-ISATRFKK-ND-IDIAKAISMM-------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp GCSEEEE-EESSCCCH-HH-HHHHHHHHHT-------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCeEE-eCCCCccH-HH-HHHHHHHHhc-------CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 3455554 77652111 11 1112222221 67999999999964 11112223333444431
Q ss_pred -Hc--CCCcEEEeec--cCCCCHHHHHHHHHHHHhhcCC
Q 028654 148 -SK--GNIPYFETSA--KEGFNVEAAFECIAKNALKNEP 181 (206)
Q Consensus 148 -~~--~~~~~~~~s~--~~~~~i~~l~~~i~~~~~~~~~ 181 (206)
.. ....++.+|+ .++.|++++.+.|.+.+++.++
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~ 256 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR 256 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence 21 2346788999 4556799999999998877654
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.01 E-value=1.7e-10 Score=91.03 Aligned_cols=152 Identities=17% Similarity=0.178 Sum_probs=82.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh------cCCCC----CCccccc-----------ceeeEEEEEE-------------e
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYV------NRKFS----NQYKATI-----------GADFLTKEVQ-------------F 52 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~------~~~~~----~~~~~~~-----------~~~~~~~~~~-------------~ 52 (206)
....|+++|.+|+||||++++|. +.... +.+.+.. +..+...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 33221 1111110 0111110000 0
Q ss_pred CCeEEEEEEeeCCCcccccc----ccccc--eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEee
Q 028654 53 EDRLFTLQIWDTAGQERFQS----LGVAF--YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGN 125 (206)
Q Consensus 53 ~~~~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~n 125 (206)
....+.+.|+||||...... ..... +..+|.+++|+|+....... .....+.. ..|+ .+|+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~--------~~~i~gvVlN 248 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD--------KVDVASVIVT 248 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH--------HHCCCCEEEE
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh--------hcCceEEEEe
Confidence 00235788999999543211 11111 12689999999998643211 11222221 1354 89999
Q ss_pred CCCCCCCCcceecHHHHHHHHHHcC-----------------CCcEEEeeccCCCC-HHHHHHHHHHH
Q 028654 126 KTDVDGGNSRVVSEKKAKAWCASKG-----------------NIPYFETSAKEGFN-VEAAFECIAKN 175 (206)
Q Consensus 126 K~D~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~s~~~~~~-i~~l~~~i~~~ 175 (206)
|.|....... ..+ .....+ ..+.+.+|+..|.| +.+|++++.+.
T Consensus 249 K~D~~~~~g~--~l~----~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 249 KLDGHAKGGG--ALS----AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CTTSCCCCTH--HHH----HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CCccccchHH--HHH----HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 9998743111 111 111211 11234468888988 99999888775
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.00 E-value=7.7e-10 Score=84.42 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=71.6
Q ss_pred CccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHH--
Q 028654 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAK-- 143 (206)
Q Consensus 66 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~-- 143 (206)
.++.|.+....+.+.++++++|+|++++. ..|...+..... +.|+++|+||+|+.+.. ...+...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-----~~p~ilV~NK~DL~~~~---~~~~~~~~~ 121 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-----NNKVLLVGNKADLIPKS---VKHDKVKHW 121 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-----SSCEEEEEECGGGSCTT---SCHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-----CCcEEEEEEChhcCCcc---cCHHHHHHH
Confidence 46778888888888999999999999753 445555555543 67999999999997542 2223333
Q ss_pred --HHHHHcCC--CcEEEeeccCCCCHHHHHHHHHHHH
Q 028654 144 --AWCASKGN--IPYFETSAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 144 --~~~~~~~~--~~~~~~s~~~~~~i~~l~~~i~~~~ 176 (206)
.++...+. ..++.+||+++.|++++++.|.+..
T Consensus 122 l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 122 MRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 33444442 2789999999999999999997754
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.88 E-value=2e-09 Score=82.25 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=70.3
Q ss_pred CccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcc-eecHHHHHH
Q 028654 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR-VVSEKKAKA 144 (206)
Q Consensus 66 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~-~~~~~~~~~ 144 (206)
.++.|.+....++..++++++|+|++++.+ .|...+..... +.|+++|+||+|+.+.... ....+.+..
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-----~~piilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-----DNPILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-----TSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-----CCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence 377888888888889999999999998663 33344444432 6799999999999764211 111222233
Q ss_pred HHHHcCC--CcEEEeeccCCCCHHHHHHHHHHHH
Q 028654 145 WCASKGN--IPYFETSAKEGFNVEAAFECIAKNA 176 (206)
Q Consensus 145 ~~~~~~~--~~~~~~s~~~~~~i~~l~~~i~~~~ 176 (206)
++...+. ..++.+||+++.|++++++.|.+..
T Consensus 127 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 127 MAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444442 3789999999999999999998754
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.81 E-value=5.5e-09 Score=76.84 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=67.6
Q ss_pred EeeCCCcc-ccccccccceecCcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee
Q 028654 61 IWDTAGQE-RFQSLGVAFYRGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV 137 (206)
Q Consensus 61 i~D~~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~ 137 (206)
+-..||+. .....+...++.+|+++.|+|+.++.+... +..|+ .++|+++|+||+|+.+. .
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l------------~~kp~ilVlNK~DL~~~----~ 66 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL------------KNKPRIMLLNKADKADA----A 66 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC------------SSSCEEEEEECGGGSCH----H
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH------------CCCCEEEEEECcccCCH----H
Confidence 34678865 444566677899999999999998776542 33332 17799999999999752 1
Q ss_pred cHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654 138 SEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178 (206)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~ 178 (206)
..+....+....+ .+++.+|++++.|++++++.+.+.+..
T Consensus 67 ~~~~~~~~~~~~g-~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 67 VTQQWKEHFENQG-IRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHHHHHHHTTT-CCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 1222223333333 689999999999999999988887653
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.68 E-value=1.8e-08 Score=74.11 Aligned_cols=56 Identities=23% Similarity=0.413 Sum_probs=34.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 67 (206)
..++++++|.+|+|||||+|+|.+.... ....+.+|.... .+.... .+.++||||.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~ 175 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGI 175 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCc
Confidence 4689999999999999999999987632 333333332222 222222 5789999994
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.67 E-value=7.6e-08 Score=74.60 Aligned_cols=91 Identities=19% Similarity=0.076 Sum_probs=50.6
Q ss_pred EEEEEeeCCCccccccc----cc--cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654 57 FTLQIWDTAGQERFQSL----GV--AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (206)
Q Consensus 57 ~~~~i~D~~G~~~~~~~----~~--~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 130 (206)
+.+.|+||+|....... .. ..+..+|.+++|+|+........ ....+... -.+..+|+||.|..
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~-------~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA-------TPIGSIIVTKLDGS 252 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS-------CTTEEEEEECCSSC
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh-------CCCeEEEEECCCCc
Confidence 57889999994322111 11 12235799999999986433222 22333222 12467999999986
Q ss_pred CCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654 131 GGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (206)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (206)
.. ......+....+ .|+.+++. |++++
T Consensus 253 ~~------gG~~ls~~~~~g-~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 253 AK------GGGALSAVAATG-APIKFIGT--GEKID 279 (443)
T ss_dssp SS------HHHHHHHHHTTC-CCEEEEEC--SSSTT
T ss_pred cc------ccHHHHHHHHHC-CCEEEEEc--CCChH
Confidence 43 122333334444 77777775 44433
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.60 E-value=1.7e-08 Score=73.37 Aligned_cols=56 Identities=23% Similarity=0.343 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 69 (206)
++++++|.+|+|||||+|+|.+.... ....++++... ..+... ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEeC---CCEEEEECCCccc
Confidence 58999999999999999999987653 22222222222 122222 2578999999543
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.50 E-value=8.6e-08 Score=76.98 Aligned_cols=64 Identities=23% Similarity=0.212 Sum_probs=39.1
Q ss_pred cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccc---cceeeEEEEEEe-CCeEEEEEEeeCCCcc
Q 028654 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKAT---IGADFLTKEVQF-EDRLFTLQIWDTAGQE 68 (206)
Q Consensus 5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~i~D~~G~~ 68 (206)
..+..+|+|+|.+|+|||||+|+|++.........+ .+.....+...+ ......+.++||||..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 345688999999999999999999987632111111 111121111111 1223468899999954
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.43 E-value=9.1e-08 Score=74.11 Aligned_cols=90 Identities=18% Similarity=0.063 Sum_probs=50.1
Q ss_pred EEEEEeeCCCccc--ccc----cccc--ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654 57 FTLQIWDTAGQER--FQS----LGVA--FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (206)
Q Consensus 57 ~~~~i~D~~G~~~--~~~----~~~~--~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 128 (206)
+.+.++||||... ... .... .....+.+++|+|+....... .....+.... .+..+|+||.|
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~~-------~~~gVIlTKlD 249 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQAS-------PIGSVIITKMD 249 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHHC-------SSEEEEEECGG
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhccc-------CCcEEEEeccc
Confidence 5678999999533 111 1111 112468999999998643222 2223333222 25789999999
Q ss_pred CCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (206)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (206)
.... .....+.....+ .|+..++. |+++
T Consensus 250 ~~a~------~G~als~~~~~g-~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 250 GTAK------GGGALSAVVATG-ATIKFIGT--GEKI 277 (433)
T ss_dssp GCSC------HHHHHHHHHHHT-CEEEEEEC--CSSS
T ss_pred cccc------chHHHHHHHHHC-CCEEEEEC--CCCh
Confidence 7532 222333334444 77777775 4443
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.37 E-value=5.7e-07 Score=73.02 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
..++|+|+.|||||||++.+.+..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 358999999999999999999864
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.37 E-value=1.3e-06 Score=67.99 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
+..|+++|++|+||||+++.|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999875
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.30 E-value=1.6e-06 Score=64.12 Aligned_cols=91 Identities=19% Similarity=0.096 Sum_probs=52.0
Q ss_pred EEEEEeeCCCccc--ccc-ccc-----cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCC
Q 028654 57 FTLQIWDTAGQER--FQS-LGV-----AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKT 127 (206)
Q Consensus 57 ~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~ 127 (206)
+.+.++||||... ... ... ..+..+|.+++|+|+.... ........+.. ..+ ..+|+||.
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~--------~~~i~gvVlnk~ 249 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ--------ASKIGTIIITKM 249 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH--------TCTTEEEEEECG
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh--------hCCCCEEEEeCC
Confidence 5788999999655 211 111 1234689999999987432 22222222221 234 67899999
Q ss_pred CCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (206)
Q Consensus 128 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (206)
|.... ......+....+ .|+..++ .|+++++
T Consensus 250 D~~~~------~g~~~~~~~~~~-~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 250 DGTAK------GGGALSAVAATG-ATIKFIG--TGEKIDE 280 (297)
T ss_dssp GGCTT------HHHHHHHHHTTT-CCEEEEE--CSSSTTC
T ss_pred CCCcc------hHHHHHHHHHHC-cCEEEEe--CCCChhh
Confidence 97532 223334445554 7777766 4555544
No 230
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.27 E-value=3.1e-07 Score=66.76 Aligned_cols=93 Identities=15% Similarity=0.003 Sum_probs=59.1
Q ss_pred CCCccc-cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHH
Q 028654 64 TAGQER-FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA 142 (206)
Q Consensus 64 ~~G~~~-~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~ 142 (206)
.||+.. ........++.+|+++.|+|+.++.+.... .+. .. ++|.++|+||+|+.+. ...+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll------~k~~iivlNK~DL~~~----~~~~~~ 67 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS------RKETIILLNKVDIADE----KTTKKW 67 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT------TSEEEEEEECGGGSCH----HHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc------CCCcEEEEECccCCCH----HHHHHH
Confidence 467543 233556677899999999999987654321 011 11 6799999999999753 112222
Q ss_pred HHHHHHcCCCcEEEeeccCCCCHHHHHHHHHH
Q 028654 143 KAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174 (206)
Q Consensus 143 ~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~ 174 (206)
..+....+ .++ .+|+.++.|++++++.+.+
T Consensus 68 ~~~~~~~g-~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 68 VEFFKKQG-KRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHHHHHTT-CCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHHHHHcC-CeE-EEECCCCcCHHHHHHHHHH
Confidence 33333334 667 9999999999998877654
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.26 E-value=1.2e-06 Score=64.95 Aligned_cols=89 Identities=13% Similarity=0.010 Sum_probs=57.1
Q ss_pred ccccceecCcEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC
Q 028654 73 LGVAFYRGADCCVLVYDVNVMKSF-DNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN 151 (206)
Q Consensus 73 ~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
..+..++++|.+++|+|+.++... ..+.+++...... ++|.++|+||+|+.+........+....+....+
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~-------~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g- 150 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN-------DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG- 150 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT-------TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC-------CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC-
Confidence 344568899999999999875543 3344444333211 7789999999999864110011233334444445
Q ss_pred CcEEEeeccCCCCHHHHH
Q 028654 152 IPYFETSAKEGFNVEAAF 169 (206)
Q Consensus 152 ~~~~~~s~~~~~~i~~l~ 169 (206)
.+++.+|+.++.|+++|+
T Consensus 151 ~~v~~~sa~~~~g~~~L~ 168 (307)
T 1t9h_A 151 YDVYLTSSKDQDSLADII 168 (307)
T ss_dssp CCEEECCHHHHTTCTTTG
T ss_pred CeEEEEecCCCCCHHHHH
Confidence 689999999888876544
No 232
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.19 E-value=1e-05 Score=63.00 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+..-|.|+|++++|||||+|.|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 34566889999999999999999863
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.09 E-value=7.9e-06 Score=61.25 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
..--++++|+.||||||+++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999875
No 234
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.08 E-value=2.5e-05 Score=59.09 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=53.9
Q ss_pred cceecCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcE
Q 028654 76 AFYRGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY 154 (206)
Q Consensus 76 ~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
..+.++|.+++|... ++.. ...+.+++...... ++|+++|+||+|+.+... ....+.........+ +++
T Consensus 126 ~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~-------~~~~iivlNK~DL~~~~~-~~~~~~~~~~y~~~G-~~v 195 (358)
T 2rcn_A 126 PIAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL-------QVEPLIVLNKIDLLDDEG-MDFVNEQMDIYRNIG-YRV 195 (358)
T ss_dssp EEEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH-------TCEEEEEEECGGGCCHHH-HHHHHHHHHHHHTTT-CCE
T ss_pred HHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc-------CCCEEEEEECccCCCchh-HHHHHHHHHHHHhCC-CcE
Confidence 346889999988665 4443 33445554433222 678899999999986310 000112222223344 789
Q ss_pred EEeeccCCCCHHHHHHH
Q 028654 155 FETSAKEGFNVEAAFEC 171 (206)
Q Consensus 155 ~~~s~~~~~~i~~l~~~ 171 (206)
+.+|+.++.|++++...
T Consensus 196 ~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 196 LMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp EECBTTTTBTHHHHHHH
T ss_pred EEEecCCCcCHHHHHHh
Confidence 99999999999987654
No 235
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.83 E-value=7.7e-07 Score=70.16 Aligned_cols=101 Identities=10% Similarity=-0.022 Sum_probs=54.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc--ccccc--------c
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLG--------V 75 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~ 75 (206)
..+..|+++|.+||||||+.+.|....... ..++.............+......+||..|... ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999987542110 011110000000000011112335788888632 22222 3
Q ss_pred cceecCcEEEEEEECCChhhHHHHHHHHHHHHH
Q 028654 76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLI 108 (206)
Q Consensus 76 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~ 108 (206)
.++...++.++|+|.++. .......|...+..
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 445557888999999986 44455566555543
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.70 E-value=2.3e-05 Score=53.53 Aligned_cols=22 Identities=55% Similarity=0.949 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
+++++|++|||||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 237
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.67 E-value=2.9e-05 Score=52.66 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=22.6
Q ss_pred CccccceeeEEEEEcCCCCCHHHHHHHHhc
Q 028654 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
|...++....|+++|++||||||+++.|.+
T Consensus 1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 444444455789999999999999998865
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.65 E-value=2.6e-05 Score=53.30 Aligned_cols=22 Identities=27% Similarity=0.732 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++++|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999864
No 239
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.65 E-value=0.00031 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=19.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHh
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~ 29 (206)
.+..|+++|.+|+||||++..|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678899999999999998876
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.61 E-value=3.2e-05 Score=53.72 Aligned_cols=22 Identities=32% Similarity=0.674 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|++|||||||++.+.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6799999999999999998763
No 241
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.52 E-value=5e-05 Score=52.79 Aligned_cols=22 Identities=45% Similarity=0.552 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5789999999999999999875
No 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.51 E-value=5e-05 Score=52.14 Aligned_cols=21 Identities=33% Similarity=0.713 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028654 11 VIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
++++|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999864
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.51 E-value=5.9e-05 Score=51.84 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
-.++++|++|||||||++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35889999999999999999875
No 244
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.49 E-value=5.5e-05 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|++|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 46899999999999999988753
No 245
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.48 E-value=5.4e-05 Score=51.24 Aligned_cols=20 Identities=30% Similarity=0.654 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 028654 10 KVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~ 29 (206)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 46899999999999999754
No 246
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.48 E-value=6.2e-05 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|++|||||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998753
No 247
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.47 E-value=6.2e-05 Score=53.08 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|++|||||||++.+.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999998743
No 248
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.46 E-value=6.8e-05 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.678 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
--|+++|++|+|||||++.|.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35789999999999999999864
No 249
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.45 E-value=6.8e-05 Score=52.42 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
....|+|+|++|||||||++.+.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999988764
No 250
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.44 E-value=8.9e-05 Score=50.33 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 251
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.41 E-value=0.002 Score=50.17 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=19.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHh
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~ 29 (206)
.+..-|.|+|+.++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 455667799999999999999664
No 252
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.41 E-value=9.1e-05 Score=51.78 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|+++|+.|||||||++.+.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998763
No 253
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.41 E-value=9e-05 Score=51.83 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
.-|+++|++|||||||++.|.+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 357899999999999999998753
No 254
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.40 E-value=8.1e-05 Score=53.12 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46899999999999999987753
No 255
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.39 E-value=0.00011 Score=51.25 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=21.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
+....|++.|.+||||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3456799999999999999999865
No 256
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.39 E-value=9.7e-05 Score=50.70 Aligned_cols=21 Identities=33% Similarity=0.713 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028654 11 VIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
|+|+||+|||||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
No 257
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.36 E-value=0.00013 Score=50.53 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=23.0
Q ss_pred CccccceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
|-+..+....|+|.|++||||||+.+.|...
T Consensus 1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 3344455678999999999999999998765
No 258
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.36 E-value=0.00011 Score=49.63 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 259
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.35 E-value=0.00011 Score=49.06 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999998754
No 260
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.35 E-value=0.0001 Score=52.21 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999987753
No 261
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.34 E-value=0.00012 Score=51.02 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
.-|+++|++|||||||++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999764
No 262
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.33 E-value=0.00012 Score=50.97 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
..|+++|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998754
No 263
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.32 E-value=0.00013 Score=52.27 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998753
No 264
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.32 E-value=0.00015 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
.-|++.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999998764
No 265
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.31 E-value=0.00015 Score=52.04 Aligned_cols=22 Identities=36% Similarity=0.705 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 028654 8 LLKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~ 29 (206)
...|+++|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999998
No 266
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.31 E-value=0.00013 Score=50.08 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
-++++|++|||||||++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 267
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.30 E-value=0.00014 Score=50.53 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
..|+++|++|||||||++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999998653
No 268
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.30 E-value=0.00013 Score=51.18 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998753
No 269
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.29 E-value=0.00013 Score=53.25 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 46899999999999999998753
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.29 E-value=0.00015 Score=48.92 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 028654 10 KVIILGDSGVGKTSLMNQY 28 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l 28 (206)
-|++.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999999
No 271
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.29 E-value=0.00013 Score=52.87 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998753
No 272
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.28 E-value=0.00016 Score=54.76 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|++|+|||||+|.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 57899999999999999999865
No 273
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.28 E-value=0.00014 Score=52.76 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|++|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5789999999999999998763
No 274
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.28 E-value=0.00014 Score=52.01 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999775
No 275
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.28 E-value=0.00014 Score=52.82 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46899999999999999998753
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.28 E-value=0.00015 Score=48.87 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.|++.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998654
No 277
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.27 E-value=0.00018 Score=49.40 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=20.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
++..|++.|.+||||||+.+.|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 278
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.26 E-value=0.00015 Score=49.88 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5789999999999999998764
No 279
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.26 E-value=0.00015 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998754
No 280
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.25 E-value=0.00018 Score=51.66 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 281
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.24 E-value=0.00016 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|+++|++||||||+++.|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988654
No 282
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.24 E-value=0.00017 Score=51.31 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 56899999999999999998753
No 283
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.24 E-value=0.00016 Score=52.44 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 46899999999999999988753
No 284
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.24 E-value=0.00018 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987753
No 285
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.23 E-value=0.0002 Score=49.04 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|++.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999865
No 286
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.23 E-value=0.00017 Score=51.62 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998753
No 287
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.22 E-value=0.00017 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998753
No 288
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.22 E-value=0.00018 Score=51.78 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999885
No 289
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.22 E-value=0.00018 Score=53.22 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6789999999999999998753
No 290
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.22 E-value=0.00024 Score=49.43 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 291
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.22 E-value=0.00018 Score=51.77 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999988753
No 292
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.21 E-value=0.0002 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|+++|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 293
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.21 E-value=0.00013 Score=51.00 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 294
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.20 E-value=0.0002 Score=52.10 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999885
No 295
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.19 E-value=0.00023 Score=49.31 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999874
No 296
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.19 E-value=0.00021 Score=51.77 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999875
No 297
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.19 E-value=0.00019 Score=52.30 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998753
No 298
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.18 E-value=0.00021 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|+++|++||||||+++.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999988764
No 299
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.18 E-value=0.0003 Score=48.00 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 300
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.18 E-value=0.00023 Score=49.91 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 301
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.18 E-value=0.00021 Score=53.21 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...-|+|+|++|||||||++.+.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4567899999999999999998764
No 302
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.18 E-value=0.00023 Score=52.13 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999998753
No 303
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.17 E-value=0.00021 Score=51.55 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998754
No 304
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.17 E-value=0.00019 Score=48.88 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998764
No 305
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.17 E-value=0.00023 Score=49.37 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|+++|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999876
No 306
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.16 E-value=0.00028 Score=47.88 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
.-++++|++|||||||++.+...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45789999999999999999864
No 307
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.16 E-value=0.00025 Score=49.75 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 308
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.15 E-value=0.00022 Score=51.84 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999988753
No 309
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.15 E-value=0.00028 Score=48.42 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|++.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999865
No 310
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.15 E-value=0.0003 Score=49.02 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|++.|++||||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999998753
No 311
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.15 E-value=0.00032 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|++.|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998865
No 312
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.14 E-value=0.00027 Score=48.21 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999864
No 313
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.13 E-value=0.0046 Score=43.08 Aligned_cols=66 Identities=20% Similarity=0.073 Sum_probs=44.7
Q ss_pred EEEEEeeCCCc-cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCC
Q 028654 57 FTLQIWDTAGQ-ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (206)
Q Consensus 57 ~~~~i~D~~G~-~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 131 (206)
+.+.++|+|+. .. ......+..+|.+|+++..+ ..+...+..++..+.... +.++.+|+|+.|...
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~------~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG------NNRFRILLTIIPPYP 134 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC------SSSEEEEECSBCCTT
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc------CCCEEEEEEecCCcc
Confidence 57889999986 42 23445667899999999876 344455555555554421 346889999998653
No 314
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.13 E-value=0.00015 Score=51.47 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=14.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh-cC
Q 028654 10 KVIILGDSGVGKTSLMNQYV-NR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~-~~ 31 (206)
-++++|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 57899999999999999998 54
No 315
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.12 E-value=0.00031 Score=48.02 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|+++|++||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998765
No 316
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.12 E-value=0.00023 Score=52.76 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|++|+|||||+|.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 46899999999999999998754
No 317
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.12 E-value=0.0003 Score=48.65 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.|++.|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999998763
No 318
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.12 E-value=0.00033 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
.+..|++.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999864
No 319
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.11 E-value=0.00027 Score=48.43 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.|++.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 320
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.11 E-value=0.00033 Score=48.51 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
.+..|++.|++||||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998865
No 321
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.11 E-value=0.0003 Score=51.05 Aligned_cols=23 Identities=48% Similarity=0.668 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 322
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.10 E-value=0.00017 Score=49.63 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|++.|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 323
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.08 E-value=0.00031 Score=50.25 Aligned_cols=20 Identities=35% Similarity=0.805 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 028654 10 KVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~ 29 (206)
-++++|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 46899999999999999887
No 324
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.08 E-value=0.00029 Score=53.43 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++|+|++|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999998763
No 325
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.08 E-value=0.00028 Score=49.81 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++++|++|||||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999874
No 326
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.08 E-value=8.5e-05 Score=55.06 Aligned_cols=23 Identities=39% Similarity=0.614 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|++|+|||||+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 67899999999999999998753
No 327
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.07 E-value=0.00031 Score=52.09 Aligned_cols=20 Identities=40% Similarity=0.718 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 028654 10 KVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~ 29 (206)
.++++|++|+|||||+|.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999998
No 328
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.07 E-value=0.00034 Score=49.50 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|++.|++||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999864
No 329
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.07 E-value=0.00039 Score=48.39 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
....|+++|++||||||+++.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999999875
No 330
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.07 E-value=0.00013 Score=49.30 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++|+|++|||||||++.+.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999998764
No 331
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.06 E-value=0.00039 Score=51.84 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
.++-|+++|++|||||||++.|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988754
No 332
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.05 E-value=0.00031 Score=53.17 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|+.|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999998754
No 333
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.05 E-value=0.00038 Score=48.60 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.|+++|+|||||+|....|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
No 334
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.04 E-value=0.00039 Score=48.93 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|+++|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 335
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.03 E-value=0.00042 Score=49.67 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|+++|+.|||||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999876
No 336
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.03 E-value=0.00039 Score=51.11 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
.+.-|++.|++||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999875
No 337
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.03 E-value=0.00021 Score=53.01 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6789999999999999988764
No 338
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.02 E-value=0.00038 Score=48.80 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 339
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.02 E-value=0.00038 Score=47.11 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 340
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.02 E-value=0.00047 Score=47.75 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|++.|++||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999999775
No 341
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.02 E-value=0.00034 Score=49.30 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998864
No 342
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.01 E-value=0.00054 Score=46.83 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
....|+++|.+||||||+++.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999999988653
No 343
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.01 E-value=0.00038 Score=52.68 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|+.|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46799999999999999998754
No 344
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.01 E-value=0.00029 Score=53.61 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.-+++|+|++|||||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998875
No 345
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.01 E-value=0.00034 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999987753
No 346
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.01 E-value=0.00043 Score=48.62 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 347
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.01 E-value=0.00039 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|+.|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 46899999999999999998754
No 348
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.01 E-value=0.00048 Score=50.70 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
.....|+|+|++|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999988754
No 349
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.01 E-value=0.00035 Score=47.61 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998865
No 350
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.00 E-value=0.00025 Score=46.79 Aligned_cols=23 Identities=26% Similarity=0.644 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|++|+|||||++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999988643
No 351
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.00 E-value=0.00039 Score=50.80 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999874
No 352
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.99 E-value=0.0004 Score=52.62 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 46899999999999999998753
No 353
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.99 E-value=0.00041 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 36899999999999999998754
No 354
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.99 E-value=0.00038 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|++|||||||++.+.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998753
No 355
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.99 E-value=0.00042 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 46899999999999999998753
No 356
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.98 E-value=0.00038 Score=52.91 Aligned_cols=22 Identities=32% Similarity=0.730 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|++|||||||++.+.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6889999999999999999875
No 357
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.97 E-value=0.00047 Score=46.85 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|++.|++||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45689999999999999999874
No 358
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.95 E-value=0.00044 Score=51.29 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.-.++++|+.|||||||++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34688999999999999999874
No 359
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.95 E-value=0.00046 Score=52.55 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|+.|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46899999999999999998753
No 360
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.95 E-value=0.00045 Score=52.64 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 46899999999999999998754
No 361
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.95 E-value=0.00057 Score=48.06 Aligned_cols=21 Identities=29% Similarity=0.648 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028654 11 VIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
|+++|+|||||+|....|...
T Consensus 32 I~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999988754
No 362
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.95 E-value=0.00046 Score=49.76 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
-|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 363
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.94 E-value=0.00045 Score=47.60 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|++.|++||||||+.+.|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988653
No 364
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.94 E-value=0.00043 Score=52.83 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|++|||||||++.+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998763
No 365
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.93 E-value=0.0006 Score=45.92 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
..++++|++|||||||+.++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999998764
No 366
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.93 E-value=0.00045 Score=51.34 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|+|+|+.|||||||++.|.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998763
No 367
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.93 E-value=0.00058 Score=47.37 Aligned_cols=23 Identities=43% Similarity=0.342 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
..-|+++|++|||||||++.|.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998865
No 368
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.92 E-value=0.00048 Score=53.34 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++|+|++|||||||++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998874
No 369
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.92 E-value=0.00062 Score=45.57 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 370
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.91 E-value=0.00051 Score=49.40 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 371
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.91 E-value=0.00061 Score=48.40 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|+++|.+||||||+.+.|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999988653
No 372
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.90 E-value=0.00058 Score=47.65 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|++.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 373
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.90 E-value=0.00064 Score=48.98 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 028654 9 LKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~ 29 (206)
..|+++|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999997
No 374
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.90 E-value=0.00054 Score=50.73 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
--++++|+.||||||+++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999999875
No 375
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.89 E-value=0.00063 Score=48.01 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 376
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.87 E-value=0.00044 Score=49.83 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+..|+++|++||||||+.+.|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999998653
No 377
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.87 E-value=0.00079 Score=46.62 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...|++.|++||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998874
No 378
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.86 E-value=0.00055 Score=54.43 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++|+|++|||||||++.+.+.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998743
No 379
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.85 E-value=0.00064 Score=45.74 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 380
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.85 E-value=0.00063 Score=46.76 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-|++.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998764
No 381
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.84 E-value=0.0006 Score=52.26 Aligned_cols=22 Identities=32% Similarity=0.714 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4689999999999999998874
No 382
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.84 E-value=0.00074 Score=48.00 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
.++.|++.|++||||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
No 383
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.84 E-value=0.00085 Score=47.06 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.+.|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999865
No 384
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.83 E-value=0.00038 Score=52.54 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|+.|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 46899999999999999998753
No 385
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.83 E-value=0.00079 Score=45.77 Aligned_cols=23 Identities=30% Similarity=0.690 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988764
No 386
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.82 E-value=0.00078 Score=46.15 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999865
No 387
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.82 E-value=0.00052 Score=48.69 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
..-|++.|+.|||||||++.|.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456899999999999999998765
No 388
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.81 E-value=0.00082 Score=48.36 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
..+.|+|.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998865
No 389
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.80 E-value=0.00048 Score=46.81 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=16.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|++.|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999998643
No 390
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.79 E-value=0.00093 Score=48.35 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 391
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.79 E-value=0.00025 Score=49.57 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-|+|.|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998653
No 392
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.77 E-value=0.00078 Score=49.19 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999999864
No 393
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.76 E-value=0.00075 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35889999999999999998764
No 394
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.76 E-value=0.0011 Score=45.04 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|+++|.+||||||+.+.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999998763
No 395
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.74 E-value=0.001 Score=49.12 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 396
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.72 E-value=0.00038 Score=52.71 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|+.|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999998754
No 397
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.72 E-value=0.00088 Score=47.24 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++++|++|+|||||+..+...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999998743
No 398
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.72 E-value=0.0011 Score=44.47 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998865
No 399
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.71 E-value=0.0009 Score=50.71 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.--++++|+.||||||+++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34688999999999999999875
No 400
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.71 E-value=0.00097 Score=45.30 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 028654 11 VIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~ 30 (206)
.+|+|+.|+|||||+.++..
T Consensus 29 ~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999865
No 401
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0008 Score=52.77 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++|+|+.|||||||++.+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999998764
No 402
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.67 E-value=0.00097 Score=47.96 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
-.|+++|++||||||+.+.|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 403
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.67 E-value=0.0012 Score=47.54 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
+..+++.|++|+|||||++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 446899999999999999998764
No 404
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.65 E-value=0.001 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
--++|+|+.|||||||++.|.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 4688999999999999999865
No 405
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.63 E-value=0.0013 Score=49.26 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
.-|+|+|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46889999999999999988753
No 406
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.61 E-value=0.00093 Score=45.23 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...+++.|++|+|||+|+..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346799999999999999988654
No 407
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.61 E-value=0.0011 Score=48.91 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++++|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999999988764
No 408
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.60 E-value=0.00085 Score=50.09 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++|+|+.|||||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 45788999999999999999653
No 409
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.60 E-value=0.0012 Score=49.84 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
+++++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998864
No 410
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.60 E-value=0.0014 Score=48.05 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.+.|+|.|.+||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999998863
No 411
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.59 E-value=0.0016 Score=45.51 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|+++|.+||||||+++.|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999988653
No 412
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.58 E-value=0.0014 Score=45.28 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999988764
No 413
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.58 E-value=0.0014 Score=46.40 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...+++.|++|+|||+|+..+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988753
No 414
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.57 E-value=0.0017 Score=46.02 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
..-|++.|++||||||+++.|...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 456889999999999999998764
No 415
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.57 E-value=0.0016 Score=44.83 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|++.|.+||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999988754
No 416
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.55 E-value=0.0014 Score=45.89 Aligned_cols=21 Identities=29% Similarity=0.180 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999987
No 417
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.55 E-value=0.0011 Score=45.98 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.+++.|+||+||||++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988865
No 418
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.55 E-value=0.0015 Score=43.09 Aligned_cols=19 Identities=37% Similarity=0.786 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028654 11 VIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~ 29 (206)
.+++|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3688999999999999975
No 419
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.54 E-value=0.0018 Score=48.29 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
..|+|+|++|||||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988754
No 420
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.51 E-value=0.0066 Score=45.46 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...+++.|++|+|||+|++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357899999999999999998654
No 421
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.51 E-value=0.0015 Score=46.37 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999874
No 422
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.50 E-value=0.0016 Score=52.16 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 423
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.50 E-value=0.0014 Score=51.50 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.++++|+.|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 468999999999999999875
No 424
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.48 E-value=0.0015 Score=49.84 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3688999999999999999875
No 425
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.46 E-value=0.0016 Score=50.71 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
+++++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 67899999999999999998764
No 426
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.44 E-value=0.0018 Score=47.66 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
+..+++.|++|+|||+|++++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456778899999999999998764
No 427
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.43 E-value=0.0016 Score=52.66 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6789999999999999998775
No 428
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.43 E-value=0.002 Score=44.45 Aligned_cols=24 Identities=50% Similarity=0.711 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
..|+++|++|+|||||...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998764
No 429
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.42 E-value=0.0017 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
-++++|+.|+|||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46899999999999999998753
No 430
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.41 E-value=0.0019 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999988753
No 431
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.39 E-value=0.0022 Score=41.89 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=21.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcCC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~~ 32 (206)
....|++.|++|+|||+++..+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34578999999999999999987653
No 432
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.0019 Score=52.47 Aligned_cols=23 Identities=17% Similarity=0.514 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|+|||||++.+.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 47899999999999999998754
No 433
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.37 E-value=0.0024 Score=45.97 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...+++.|++|+|||+|++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998763
No 434
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.36 E-value=0.0022 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...+++.|++|+|||+|++.+.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457899999999999999998764
No 435
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.36 E-value=0.0023 Score=44.31 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.|++.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 436
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.34 E-value=0.0029 Score=46.73 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999988764
No 437
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.34 E-value=0.0029 Score=46.90 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
.-|+|+|++|||||||...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35789999999999999999765
No 438
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.33 E-value=0.0023 Score=46.71 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
....+++.|++|+|||+|++.+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457899999999999999999764
No 439
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.32 E-value=0.0026 Score=45.19 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~ 30 (206)
....|+++|++||||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998875
No 440
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.31 E-value=0.0023 Score=45.07 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
.+++.|++|+|||||+..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998865
No 441
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.29 E-value=0.0022 Score=46.83 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999998875
No 442
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.29 E-value=0.0024 Score=44.40 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.+++.|++|+|||+|+..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988754
No 443
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.28 E-value=0.0025 Score=47.10 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...+++.|++|+|||+|++.+.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346899999999999999998764
No 444
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.28 E-value=0.0029 Score=44.78 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
..+++++|++||||||+...|..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 46889999999999999998865
No 445
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.28 E-value=0.0025 Score=48.52 Aligned_cols=19 Identities=32% Similarity=0.615 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028654 11 VIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~ 29 (206)
.+++|+.|+|||||+++++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4589999999999999976
No 446
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.28 E-value=0.0024 Score=44.70 Aligned_cols=23 Identities=13% Similarity=0.410 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
+..|++.|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998865
No 447
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.27 E-value=0.0024 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57899999999999999998754
No 448
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.27 E-value=0.0033 Score=45.65 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.....+++.|++|+|||+|+..+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34568899999999999999998764
No 449
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.26 E-value=0.0023 Score=51.24 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998754
No 450
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.26 E-value=0.0024 Score=49.45 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
+.-|+++|++||||||+.+.|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346788999999999999998754
No 451
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.25 E-value=0.0017 Score=52.70 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999998775
No 452
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.24 E-value=0.0013 Score=48.44 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=16.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 028654 9 LKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~ 30 (206)
+-|+|.|++||||||+.+.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998765
No 453
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.0029 Score=49.12 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+..|++.||||+|||+|++++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 4568999999999999999999764
No 454
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.23 E-value=0.0019 Score=52.49 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 67899999999999999987643
No 455
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.22 E-value=0.0025 Score=47.02 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 028654 8 LLKVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~ 29 (206)
.-.++++|+.|+||||++..|.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999999875
No 456
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.0031 Score=48.90 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+..|++.||||+|||+|++++.+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3557999999999999999999764
No 457
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.21 E-value=0.0032 Score=46.49 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
...+++.|++|+|||++++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999987654
No 458
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.20 E-value=0.003 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|||||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998854
No 459
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.20 E-value=0.0026 Score=47.41 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
-.+++.|++|+|||||++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46889999999999999998764
No 460
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.19 E-value=0.0034 Score=42.66 Aligned_cols=21 Identities=14% Similarity=0.412 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028654 11 VIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
++|+|.++||||+|...+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999865
No 461
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.18 E-value=0.0039 Score=46.10 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
+.-|+|+|++|||||||...|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 345788999999999999998764
No 462
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.18 E-value=0.0016 Score=52.61 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6789999999999999987764
No 463
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.17 E-value=0.0041 Score=46.58 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
.-|+|+|++|||||||...|....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 358899999999999999988653
No 464
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.0034 Score=48.82 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
++..|++.||||+|||+|++++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999764
No 465
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.15 E-value=0.0031 Score=46.76 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
.--|+++|++|+||||++..+.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34678999999999999998764
No 466
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.15 E-value=0.0032 Score=51.13 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~ 32 (206)
.++++|+.|+|||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998854
No 467
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.14 E-value=0.0023 Score=46.30 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
....|++.|..||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3567899999999999999988654
No 468
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.13 E-value=0.0022 Score=52.01 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.++++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999988764
No 469
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.0033 Score=51.09 Aligned_cols=22 Identities=27% Similarity=0.671 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 028654 11 VIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~~ 32 (206)
++++|+.|+|||||++.+.+..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999998864
No 470
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.06 E-value=0.004 Score=46.52 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|++.|++|+|||+|++++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 457899999999999999999764
No 471
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.05 E-value=0.0037 Score=44.40 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999777653
No 472
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.05 E-value=0.0033 Score=47.50 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
-+.++|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999998865
No 473
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.05 E-value=0.0048 Score=46.02 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...+++.|++|+|||+|++++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999998764
No 474
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.04 E-value=0.0034 Score=47.66 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.-.+++.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999998764
No 475
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.0037 Score=47.97 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=21.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
++..|++.||||+|||+|++++.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999764
No 476
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.01 E-value=0.003 Score=47.60 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 028654 11 VIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~~~ 31 (206)
+++.|++|+||||+++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988763
No 477
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.01 E-value=0.0047 Score=46.58 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~ 30 (206)
..+|+++|++|+||||+...|.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999987654
No 478
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.00 E-value=0.0022 Score=41.79 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|++.|++|+|||++++.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 356899999999999999887654
No 479
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.96 E-value=0.0042 Score=45.74 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998753
No 480
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.95 E-value=0.004 Score=46.76 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
++++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998765
No 481
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.95 E-value=0.0045 Score=47.11 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.+++.|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 482
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.94 E-value=0.0052 Score=43.77 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
..|++.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999998764
No 483
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.91 E-value=0.005 Score=45.69 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...+++.|++|+|||+|+.++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999988753
No 484
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.87 E-value=0.0063 Score=42.62 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=20.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~ 30 (206)
+...-|++.|++||||||+++.|..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3455688999999999999999864
No 485
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.87 E-value=0.0042 Score=43.92 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=17.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
..-|++.|++||||||+++.|...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999998653
No 486
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.86 E-value=0.0057 Score=42.46 Aligned_cols=19 Identities=37% Similarity=0.786 Sum_probs=16.6
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 028654 11 VIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 11 i~viG~~~~GKStli~~l~ 29 (206)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 3688999999999999864
No 487
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.84 E-value=0.0065 Score=40.91 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~~ 32 (206)
.-+++.|++|+||||+.-.|..+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 468899999999999999988754
No 488
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.79 E-value=0.0061 Score=52.05 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNRKF 33 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~~~ 33 (206)
.++++|+.|+|||||++.+.++.+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 578999999999999999986543
No 489
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.0062 Score=47.08 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+..|++.||||+|||+|++++.+.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHH
Confidence 4568999999999999999999764
No 490
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.76 E-value=0.0032 Score=50.52 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|+++|++|||||||++.|.+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 356899999999999999998765
No 491
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.75 E-value=0.0022 Score=46.36 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
..+++.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999998763
No 492
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.75 E-value=0.0066 Score=43.21 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=20.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 6 RMLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 6 ~~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
+...-|++.|.+||||||+++.|...
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456889999999999999998653
No 493
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.0052 Score=47.97 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 7 ~~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.+..|++.|+||+|||+|++++.+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4668999999999999999999764
No 494
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.73 E-value=0.0055 Score=48.54 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
..++++|++|+|||+|++.+.+.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998764
No 495
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.73 E-value=0.0058 Score=45.91 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 028654 10 KVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~~ 31 (206)
.+++.|++|+||||+++.+.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 496
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.72 E-value=0.006 Score=46.21 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
...|++.|++|+|||+|++++...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999998764
No 497
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.72 E-value=0.0031 Score=55.83 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 028654 10 KVIILGDSGVGKTSLMNQYVN 30 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~~ 30 (206)
+|+++|++|||||||++.|.+
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
No 498
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.72 E-value=0.0056 Score=47.79 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 028654 9 LKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 9 ~~i~viG~~~~GKStli~~l~~~ 31 (206)
-.+++.|++|+|||||++.+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998753
No 499
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.71 E-value=0.0059 Score=46.99 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 028654 10 KVIILGDSGVGKTSLMNQYV 29 (206)
Q Consensus 10 ~i~viG~~~~GKStli~~l~ 29 (206)
-+.|+|++|+|||||+..+.
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 46799999999999999775
No 500
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.69 E-value=0.0049 Score=46.83 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (206)
Q Consensus 8 ~~~i~viG~~~~GKStli~~l~~~ 31 (206)
.-.+++.|++|+|||||++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998754
Done!