Query 028655
Match_columns 206
No_of_seqs 256 out of 1654
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 01:07:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt0_A Nanog, homeobox protein 99.8 7.8E-21 2.7E-25 133.7 7.9 61 88-148 21-81 (84)
2 2dmt_A Homeobox protein BARH-l 99.8 1.4E-20 4.9E-25 131.3 7.2 62 88-149 16-77 (80)
3 1nk2_P Homeobox protein VND; h 99.8 1.5E-20 5.3E-25 130.2 6.8 66 88-153 8-73 (77)
4 2cra_A Homeobox protein HOX-B1 99.8 1.4E-20 4.8E-25 128.0 6.0 61 88-148 6-66 (70)
5 2da3_A Alpha-fetoprotein enhan 99.8 1.7E-20 5.9E-25 130.7 6.5 62 88-149 16-77 (80)
6 3a01_A Homeodomain-containing 99.8 2.7E-20 9.2E-25 133.5 7.5 70 88-157 16-85 (93)
7 2dmu_A Homeobox protein goosec 99.8 2.4E-20 8.2E-25 126.9 6.8 62 88-149 6-67 (70)
8 2ecc_A Homeobox and leucine zi 99.8 1.9E-20 6.5E-25 128.9 6.3 60 91-150 5-64 (76)
9 2h1k_A IPF-1, pancreatic and d 99.8 1.7E-20 5.7E-25 125.1 5.9 59 89-147 3-61 (63)
10 2vi6_A Homeobox protein nanog; 99.8 1.2E-20 4E-25 125.5 5.0 60 89-148 3-62 (62)
11 2da2_A Alpha-fetoprotein enhan 99.8 2.2E-20 7.6E-25 127.0 6.0 62 88-149 6-67 (70)
12 2e1o_A Homeobox protein PRH; D 99.8 3.2E-20 1.1E-24 126.3 6.8 62 88-149 6-67 (70)
13 2hdd_A Protein (engrailed home 99.8 1.8E-20 6.2E-25 124.1 5.4 58 89-146 3-60 (61)
14 2dmq_A LIM/homeobox protein LH 99.8 3.6E-20 1.2E-24 129.2 7.0 65 88-152 6-70 (80)
15 1puf_A HOX-1.7, homeobox prote 99.8 4.6E-20 1.6E-24 127.8 7.5 62 88-149 12-73 (77)
16 2dms_A Homeobox protein OTX2; 99.8 3.3E-20 1.1E-24 129.4 6.7 64 88-151 6-69 (80)
17 1zq3_P PRD-4, homeotic bicoid 99.8 3.4E-20 1.2E-24 125.5 6.4 62 89-150 2-63 (68)
18 1ig7_A Homeotic protein MSX-1; 99.8 3.2E-20 1.1E-24 121.6 6.0 56 91-146 2-57 (58)
19 2cue_A Paired box protein PAX6 99.8 3.7E-20 1.3E-24 129.2 6.7 61 88-148 6-66 (80)
20 2da1_A Alpha-fetoprotein enhan 99.8 2.6E-20 9E-25 126.6 5.5 62 88-149 6-67 (70)
21 2l7z_A Homeobox protein HOX-A1 99.8 4.9E-20 1.7E-24 126.4 6.7 63 87-149 5-67 (73)
22 1ahd_P Antennapedia protein mu 99.8 2.4E-20 8.3E-25 126.2 5.1 61 90-150 3-63 (68)
23 2djn_A Homeobox protein DLX-5; 99.8 3.1E-20 1E-24 126.4 5.3 61 88-148 6-66 (70)
24 1bw5_A ISL-1HD, insulin gene e 99.8 3.1E-20 1.1E-24 124.9 5.1 60 89-148 3-62 (66)
25 1wh5_A ZF-HD homeobox family p 99.8 4.4E-20 1.5E-24 128.8 6.1 59 88-146 16-78 (80)
26 2r5y_A Homeotic protein sex co 99.8 5.1E-20 1.7E-24 130.7 6.5 61 88-148 27-87 (88)
27 1jgg_A Segmentation protein EV 99.8 4.5E-20 1.5E-24 121.8 5.7 58 90-147 2-59 (60)
28 1ftt_A TTF-1 HD, thyroid trans 99.8 5.4E-20 1.8E-24 124.5 6.1 61 90-150 3-63 (68)
29 2da5_A Zinc fingers and homeob 99.8 5.7E-20 1.9E-24 126.7 6.2 60 90-149 8-67 (75)
30 2k40_A Homeobox expressed in E 99.8 4.9E-20 1.7E-24 124.3 5.5 62 90-151 2-63 (67)
31 1uhs_A HOP, homeodomain only p 99.8 7.9E-20 2.7E-24 125.0 6.1 59 90-148 2-61 (72)
32 3a02_A Homeobox protein arista 99.8 4.9E-20 1.7E-24 121.7 4.9 57 92-148 2-58 (60)
33 3rkq_A Homeobox protein NKX-2. 99.8 8.1E-20 2.8E-24 119.5 5.8 57 89-145 2-58 (58)
34 3a03_A T-cell leukemia homeobo 99.8 6.7E-20 2.3E-24 119.4 5.2 54 94-147 2-55 (56)
35 1b8i_A Ultrabithorax, protein 99.8 6.3E-20 2.1E-24 128.3 5.4 61 88-148 19-79 (81)
36 1fjl_A Paired protein; DNA-bin 99.8 1E-19 3.5E-24 127.2 6.5 61 88-148 17-77 (81)
37 2ecb_A Zinc fingers and homeob 99.8 6.2E-20 2.1E-24 130.4 5.2 59 93-151 15-73 (89)
38 2dn0_A Zinc fingers and homeob 99.8 7.3E-20 2.5E-24 126.5 5.3 60 90-149 9-68 (76)
39 1yz8_P Pituitary homeobox 2; D 99.8 3.5E-20 1.2E-24 125.4 3.3 61 89-149 3-63 (68)
40 2hi3_A Homeodomain-only protei 99.8 1.3E-19 4.6E-24 124.2 6.2 60 90-149 3-63 (73)
41 2da4_A Hypothetical protein DK 99.8 6.5E-20 2.2E-24 127.9 4.7 61 88-148 7-71 (80)
42 1wh7_A ZF-HD homeobox family p 99.8 8.5E-20 2.9E-24 127.4 5.2 58 88-146 16-78 (80)
43 2m0c_A Homeobox protein arista 99.8 2.1E-19 7.3E-24 123.5 6.4 61 88-148 8-68 (75)
44 1puf_B PRE-B-cell leukemia tra 99.8 2.5E-19 8.4E-24 122.8 6.4 65 90-154 2-69 (73)
45 2ly9_A Zinc fingers and homeob 99.8 2.4E-19 8.3E-24 123.1 6.3 63 88-150 5-67 (74)
46 3nar_A ZHX1, zinc fingers and 99.8 1.8E-19 6.1E-24 129.9 5.5 62 88-149 24-85 (96)
47 1akh_A Protein (mating-type pr 99.8 1.5E-19 5.1E-24 119.6 4.6 57 89-145 5-61 (61)
48 1b72_A Protein (homeobox prote 99.8 2.3E-19 8E-24 129.5 5.8 62 88-149 33-94 (97)
49 1k61_A Mating-type protein alp 99.8 2.8E-19 9.5E-24 118.0 5.4 56 92-147 1-59 (60)
50 1x2n_A Homeobox protein pknox1 99.8 6.3E-19 2.2E-23 120.7 7.1 63 88-150 6-71 (73)
51 2cqx_A LAG1 longevity assuranc 99.8 1.2E-19 4.2E-24 124.1 3.4 59 90-148 9-68 (72)
52 2dmp_A Zinc fingers and homeob 99.8 5.2E-19 1.8E-23 125.8 5.8 59 92-150 16-74 (89)
53 1b72_B Protein (PBX1); homeodo 99.8 7.2E-19 2.5E-23 124.4 6.4 61 90-150 2-65 (87)
54 1du6_A PBX1, homeobox protein 99.8 3.2E-19 1.1E-23 119.2 4.1 58 89-146 3-63 (64)
55 2l9r_A Homeobox protein NKX-3. 99.8 3.6E-19 1.2E-23 120.7 4.1 56 96-151 11-66 (69)
56 1le8_B Mating-type protein alp 99.7 6.5E-19 2.2E-23 123.7 4.9 60 90-149 3-65 (83)
57 2dmn_A Homeobox protein TGIF2L 99.7 1.9E-18 6.6E-23 121.3 6.9 65 88-152 6-73 (83)
58 2cuf_A FLJ21616 protein; homeo 99.7 1.4E-18 4.9E-23 124.9 6.3 63 88-150 6-83 (95)
59 3nau_A Zinc fingers and homeob 99.7 9.8E-19 3.4E-23 116.6 5.0 53 96-148 11-63 (66)
60 1x2m_A LAG1 longevity assuranc 99.7 7.4E-19 2.5E-23 117.1 3.1 50 98-147 9-59 (64)
61 1mnm_C Protein (MAT alpha-2 tr 99.7 3E-18 1E-22 121.3 6.1 59 88-146 26-87 (87)
62 1e3o_C Octamer-binding transcr 99.7 2.8E-18 9.7E-23 134.5 5.1 60 88-147 100-159 (160)
63 1au7_A Protein PIT-1, GHF-1; c 99.7 3.1E-18 1.1E-22 132.4 5.3 60 88-147 86-145 (146)
64 2e19_A Transcription factor 8; 99.7 4.8E-18 1.6E-22 113.6 5.1 53 95-147 9-61 (64)
65 2xsd_C POU domain, class 3, tr 99.7 3.2E-18 1.1E-22 134.7 4.9 62 88-149 98-159 (164)
66 1wi3_A DNA-binding protein SAT 99.7 7.7E-18 2.6E-22 112.3 5.8 59 88-146 6-65 (71)
67 2da6_A Hepatocyte nuclear fact 99.7 1.2E-17 4.3E-22 120.8 6.8 61 88-148 5-86 (102)
68 3d1n_I POU domain, class 6, tr 99.7 1.5E-17 5.2E-22 129.2 6.4 59 88-146 92-150 (151)
69 3k2a_A Homeobox protein MEIS2; 99.7 1.2E-17 4.2E-22 112.6 4.6 60 95-154 4-66 (67)
70 1lfb_A Liver transcription fac 99.7 1.1E-17 3.6E-22 121.2 4.0 61 88-148 8-89 (99)
71 3l1p_A POU domain, class 5, tr 99.7 2.9E-17 9.8E-22 128.2 5.3 60 88-147 95-154 (155)
72 2d5v_A Hepatocyte nuclear fact 99.7 5.8E-17 2E-21 127.4 4.7 61 88-148 96-156 (164)
73 2da7_A Zinc finger homeobox pr 99.5 3.8E-15 1.3E-19 99.9 4.3 48 98-145 14-61 (71)
74 2lk2_A Homeobox protein TGIF1; 99.5 8.1E-15 2.8E-19 103.5 4.7 54 96-149 12-68 (89)
75 1ic8_A Hepatocyte nuclear fact 99.5 4.1E-15 1.4E-19 119.7 2.7 59 88-146 114-193 (194)
76 2h8r_A Hepatocyte nuclear fact 99.4 1.7E-13 5.8E-18 111.7 4.4 56 89-144 142-218 (221)
77 1mh3_A Maltose binding-A1 home 99.4 1.8E-13 6.2E-18 120.1 3.4 53 93-145 369-421 (421)
78 2nzz_A Penetratin conjugated G 99.1 7.3E-12 2.5E-16 73.9 -1.1 28 131-158 1-28 (37)
79 2ys9_A Homeobox and leucine zi 95.9 0.0044 1.5E-07 41.1 2.7 39 101-139 18-56 (70)
80 2glo_A Brinker CG9653-PA; prot 87.5 0.55 1.9E-05 29.2 3.4 45 93-138 3-47 (59)
81 1hlv_A CENP-B, major centromer 82.5 2.2 7.4E-05 30.5 5.1 49 92-143 4-52 (131)
82 2jn6_A Protein CGL2762, transp 82.3 1 3.5E-05 30.7 3.1 41 94-138 4-45 (97)
83 1jko_C HIN recombinase, DNA-in 78.5 1.1 3.9E-05 26.0 2.0 41 95-140 5-45 (52)
84 1tc3_C Protein (TC3 transposas 75.7 3.1 0.00011 23.6 3.5 40 95-139 5-44 (51)
85 2elh_A CG11849-PA, LD40883P; s 75.4 5.4 0.00018 26.6 5.0 42 92-138 19-60 (87)
86 3hug_A RNA polymerase sigma fa 65.6 4.8 0.00016 27.0 3.0 46 96-146 38-83 (92)
87 1p4w_A RCSB; solution structur 60.7 11 0.00038 25.9 4.2 46 93-144 32-77 (99)
88 2o8x_A Probable RNA polymerase 60.5 7.6 0.00026 24.0 3.1 46 96-146 16-61 (70)
89 3c57_A Two component transcrip 60.0 6.5 0.00022 26.6 2.9 46 96-147 28-73 (95)
90 2rn7_A IS629 ORFA; helix, all 57.3 14 0.00048 25.2 4.3 46 93-138 4-52 (108)
91 1iuf_A Centromere ABP1 protein 57.3 13 0.00046 27.1 4.4 49 90-141 6-61 (144)
92 2x7l_M HIV REV; nuclear export 56.1 5.6 0.00019 28.4 2.0 36 101-150 15-50 (115)
93 1s7o_A Hypothetical UPF0122 pr 55.8 24 0.00082 24.8 5.4 46 96-146 23-68 (113)
94 1je8_A Nitrate/nitrite respons 55.1 10 0.00034 24.9 3.1 46 95-146 21-66 (82)
95 1fse_A GERE; helix-turn-helix 52.1 12 0.00041 23.3 3.0 45 95-145 11-55 (74)
96 2dgc_A Protein (GCN4); basic d 51.2 20 0.00068 22.7 3.9 32 151-182 30-61 (63)
97 2p7v_B Sigma-70, RNA polymeras 50.7 14 0.00048 23.0 3.1 50 96-146 6-55 (68)
98 3i5g_B Myosin regulatory light 49.9 32 0.0011 24.8 5.5 42 91-132 5-51 (153)
99 1ku3_A Sigma factor SIGA; heli 49.6 16 0.00054 23.1 3.3 49 96-145 11-59 (73)
100 1t2k_D Cyclic-AMP-dependent tr 49.4 40 0.0014 20.9 5.1 31 152-182 23-53 (61)
101 1xsv_A Hypothetical UPF0122 pr 49.2 33 0.0011 23.9 5.2 46 96-146 26-71 (113)
102 1x3u_A Transcriptional regulat 49.0 11 0.00036 24.0 2.4 45 96-146 17-61 (79)
103 2lv7_A Calcium-binding protein 48.0 37 0.0013 22.9 5.2 46 93-138 27-79 (100)
104 1hjb_A Ccaat/enhancer binding 47.7 39 0.0013 22.9 5.1 31 151-181 43-73 (87)
105 3fmy_A HTH-type transcriptiona 47.6 17 0.00059 22.9 3.2 39 96-141 11-49 (73)
106 1gu4_A CAAT/enhancer binding p 47.0 42 0.0014 22.2 5.1 41 141-184 29-69 (78)
107 3lph_A Protein REV; helix-loop 46.8 7 0.00024 25.6 1.1 35 101-149 18-52 (72)
108 1jnm_A Proto-oncogene C-JUN; B 46.1 45 0.0015 20.7 5.0 32 151-182 22-53 (62)
109 3mzy_A RNA polymerase sigma-H 45.7 17 0.00059 25.9 3.4 45 96-146 110-154 (164)
110 1tty_A Sigma-A, RNA polymerase 44.7 26 0.00088 23.0 3.9 50 96-146 19-68 (87)
111 1ci6_A Transcription factor AT 43.7 52 0.0018 20.7 5.0 30 152-181 24-53 (63)
112 1t2k_D Cyclic-AMP-dependent tr 42.1 53 0.0018 20.3 4.8 41 141-181 19-59 (61)
113 2yy0_A C-MYC-binding protein; 41.8 40 0.0014 20.6 4.0 33 150-182 18-50 (53)
114 2rnj_A Response regulator prot 41.5 16 0.00055 24.2 2.4 45 96-146 30-74 (91)
115 3ulq_B Transcriptional regulat 40.5 34 0.0012 22.8 4.0 40 94-139 28-67 (90)
116 2xi8_A Putative transcription 39.7 9.8 0.00034 22.9 1.0 23 119-141 17-39 (66)
117 1u78_A TC3 transposase, transp 39.6 28 0.00097 24.3 3.7 41 94-139 5-45 (141)
118 2x48_A CAG38821; archeal virus 39.0 22 0.00075 20.9 2.5 36 98-138 18-53 (55)
119 3o9x_A Uncharacterized HTH-typ 39.0 24 0.00081 25.0 3.1 23 119-141 87-109 (133)
120 2r1j_L Repressor protein C2; p 38.8 10 0.00036 22.9 1.0 23 119-141 21-43 (68)
121 1fi6_A EH domain protein REPS1 38.7 23 0.00078 23.3 2.8 43 96-138 3-50 (92)
122 2wt7_A Proto-oncogene protein 37.6 73 0.0025 19.8 5.0 30 152-181 24-53 (63)
123 3bd1_A CRO protein; transcript 37.1 11 0.00036 24.2 0.9 23 119-141 14-36 (79)
124 1zug_A Phage 434 CRO protein; 36.8 11 0.00039 23.0 1.0 24 119-142 19-42 (71)
125 1or7_A Sigma-24, RNA polymeras 36.6 29 0.00099 25.6 3.5 46 96-146 141-186 (194)
126 3bs3_A Putative DNA-binding pr 36.2 12 0.00042 23.2 1.1 23 119-141 26-48 (76)
127 2pmy_A RAS and EF-hand domain- 35.9 19 0.00064 23.5 2.0 43 96-138 21-68 (91)
128 2wt7_B Transcription factor MA 35.8 73 0.0025 21.7 5.0 55 127-181 17-78 (90)
129 1u78_A TC3 transposase, transp 34.7 60 0.0021 22.5 4.8 44 94-141 59-104 (141)
130 1rp3_A RNA polymerase sigma fa 34.3 31 0.0011 26.3 3.4 46 96-146 188-233 (239)
131 2bnk_A Early protein GP16.7; D 34.1 56 0.0019 20.5 3.8 58 96-153 5-62 (67)
132 1adr_A P22 C2 repressor; trans 33.9 14 0.00047 22.9 1.0 23 119-141 21-43 (76)
133 3omt_A Uncharacterized protein 33.3 15 0.0005 22.9 1.1 22 119-140 24-45 (73)
134 1c07_A Protein (epidermal grow 33.3 27 0.00091 23.1 2.5 43 96-138 4-51 (95)
135 1gd2_E Transcription factor PA 32.8 58 0.002 21.1 3.9 27 155-181 40-66 (70)
136 2b5a_A C.BCLI; helix-turn-heli 32.6 15 0.00052 22.9 1.0 23 119-141 26-48 (77)
137 1r69_A Repressor protein CI; g 32.1 15 0.00053 22.2 1.0 24 119-142 17-40 (69)
138 1rzs_A Antirepressor, regulato 31.6 19 0.00066 22.1 1.4 19 119-137 13-31 (61)
139 2jpc_A SSRB; DNA binding prote 31.2 21 0.0007 21.4 1.5 28 119-146 16-43 (61)
140 1y7y_A C.AHDI; helix-turn-heli 30.4 17 0.00059 22.3 1.0 22 119-140 29-50 (74)
141 2rgt_A Fusion of LIM/homeobox 30.2 0.96 3.3E-05 34.4 -6.1 29 88-116 135-163 (169)
142 3kz3_A Repressor protein CI; f 30.2 17 0.00059 23.1 1.0 23 119-141 28-50 (80)
143 3b7h_A Prophage LP1 protein 11 29.9 18 0.00063 22.5 1.1 23 119-141 23-45 (78)
144 2kpj_A SOS-response transcript 29.5 18 0.00061 23.9 1.1 23 119-141 25-47 (94)
145 1dh3_A Transcription factor CR 29.4 45 0.0016 20.4 2.8 27 152-178 23-49 (55)
146 2k27_A Paired box protein PAX- 29.3 1.4E+02 0.005 21.3 6.3 62 72-138 2-63 (159)
147 2a6c_A Helix-turn-helix motif; 29.0 21 0.00072 23.0 1.3 23 119-141 34-56 (83)
148 2hin_A GP39, repressor protein 28.6 20 0.00068 23.2 1.1 21 119-139 13-33 (71)
149 3bdn_A Lambda repressor; repre 28.6 23 0.0008 27.4 1.7 24 118-141 32-55 (236)
150 2kvr_A Ubiquitin carboxyl-term 28.1 22 0.00075 25.9 1.4 23 119-141 72-94 (130)
151 1jnm_A Proto-oncogene C-JUN; B 27.9 45 0.0015 20.7 2.7 41 142-182 20-60 (62)
152 2wiu_B HTH-type transcriptiona 27.9 24 0.00083 22.5 1.5 23 119-141 28-50 (88)
153 1pdn_C Protein (PRD paired); p 27.4 91 0.0031 20.9 4.6 44 95-138 75-125 (128)
154 2q0o_A Probable transcriptiona 26.7 60 0.002 25.2 3.9 46 94-145 174-219 (236)
155 1j7q_A CAVP, calcium vector pr 26.6 67 0.0023 20.0 3.5 42 96-137 8-59 (86)
156 2cqq_A RSGI RUH-037, DNAJ homo 26.3 1.3E+02 0.0044 19.3 4.8 43 93-135 8-50 (72)
157 2k9q_A Uncharacterized protein 25.6 23 0.00079 22.2 1.0 23 119-141 18-40 (77)
158 2ef8_A C.ECOT38IS, putative tr 25.5 24 0.00082 22.3 1.1 23 119-141 26-48 (84)
159 3f6w_A XRE-family like protein 25.2 24 0.00082 22.4 1.0 23 119-141 30-52 (83)
160 1j9i_A GPNU1 DBD;, terminase s 24.6 32 0.0011 21.4 1.5 23 119-141 5-27 (68)
161 3clo_A Transcriptional regulat 24.3 55 0.0019 25.9 3.3 46 95-146 197-242 (258)
162 2q24_A Putative TETR family tr 24.1 38 0.0013 24.7 2.1 43 100-144 20-62 (194)
163 2ict_A Antitoxin HIGA; helix-t 23.4 26 0.0009 22.9 1.0 23 119-141 24-46 (94)
164 1lmb_3 Protein (lambda repress 22.7 28 0.00097 22.5 1.0 23 119-141 33-55 (92)
165 3t72_q RNA polymerase sigma fa 22.6 1.3E+02 0.0046 20.3 4.6 50 96-146 20-69 (99)
166 3t76_A VANU, transcriptional r 22.5 29 0.00098 23.1 1.0 23 119-141 40-62 (88)
167 2jrt_A Uncharacterized protein 22.5 1.5E+02 0.0052 20.0 4.8 40 93-137 30-70 (95)
168 2l49_A C protein; P2 bacteriop 22.4 32 0.0011 22.6 1.3 23 119-141 20-42 (99)
169 1ci6_A Transcription factor AT 22.1 1.5E+02 0.0051 18.4 5.1 38 145-182 24-61 (63)
170 3s8q_A R-M controller protein; 21.7 31 0.0011 21.8 1.0 22 119-140 27-48 (82)
171 1dtl_A Cardiac troponin C; hel 21.5 98 0.0034 21.4 3.9 44 95-138 11-62 (161)
172 2opo_A Polcalcin CHE A 3; calc 21.1 63 0.0022 20.1 2.5 43 96-138 5-53 (86)
173 1l3l_A Transcriptional activat 21.0 84 0.0029 24.3 3.7 45 94-144 172-216 (234)
174 2cqr_A RSGI RUH-043, DNAJ homo 21.0 1.7E+02 0.006 18.7 5.5 42 93-134 18-60 (73)
175 8tfv_A Protein (thanatin); bac 20.7 26 0.00088 16.9 0.3 14 130-143 3-16 (21)
176 2qko_A Possible transcriptiona 20.7 38 0.0013 25.1 1.5 41 101-142 34-74 (215)
177 3qq6_A HTH-type transcriptiona 20.6 34 0.0011 21.7 1.0 21 119-139 26-46 (78)
178 3i5g_C Myosin catalytic light 20.5 65 0.0022 23.3 2.8 43 95-137 2-53 (159)
179 1etf_B REV peptide; complex (R 20.3 33 0.0011 17.9 0.7 11 138-148 7-17 (26)
180 2lhi_A Calmodulin, serine/thre 20.0 82 0.0028 23.1 3.3 37 95-131 4-45 (176)
No 1
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.83 E-value=7.8e-21 Score=133.70 Aligned_cols=61 Identities=26% Similarity=0.447 Sum_probs=56.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQR 148 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~ 148 (206)
..+++|+.|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.+
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4455666799999999999999999999999999999999999999999999999999865
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=131.29 Aligned_cols=62 Identities=31% Similarity=0.477 Sum_probs=56.7
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRL 149 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~ 149 (206)
..+++|+.|+.+|+.+||..|..++||+..++++||..|||+++||+|||||||+|+|+...
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 44555666999999999999999999999999999999999999999999999999998643
No 3
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.82 E-value=1.5e-20 Score=130.20 Aligned_cols=66 Identities=32% Similarity=0.506 Sum_probs=59.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhccch
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLGKDY 153 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~~~~ 153 (206)
..+++|++|+..|+..||..|..++||+..++++||..|||+++||+|||||||+|+|+......+
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~~ 73 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGY 73 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccccC
Confidence 344555669999999999999999999999999999999999999999999999999997766554
No 4
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=1.4e-20 Score=128.05 Aligned_cols=61 Identities=25% Similarity=0.512 Sum_probs=56.7
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQR 148 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~ 148 (206)
..+++|++|+..|+.+||..|..++||+..++++||..+||+++||+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 4456667799999999999999999999999999999999999999999999999999864
No 5
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=130.66 Aligned_cols=62 Identities=27% Similarity=0.488 Sum_probs=57.1
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRL 149 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~ 149 (206)
..+++|++||.+|+..||..|..++||+..++++||..|||++.||+|||||||+|+|+++.
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 44566667999999999999999999999999999999999999999999999999998653
No 6
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.81 E-value=2.7e-20 Score=133.54 Aligned_cols=70 Identities=29% Similarity=0.422 Sum_probs=58.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhccchHHHH
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLGKDYDSLK 157 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~~~~~~l~ 157 (206)
..+++|+.||.+|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|+...+.......
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~ 85 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQ 85 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHH
Confidence 4455666799999999999999999999999999999999999999999999999999987666554443
No 7
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-20 Score=126.87 Aligned_cols=62 Identities=27% Similarity=0.442 Sum_probs=57.1
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRL 149 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~ 149 (206)
..+++|++|+.+|+..||..|..++||+..++++||..+||++.||++||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 34566777999999999999999999999999999999999999999999999999998653
No 8
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=1.9e-20 Score=128.91 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=55.8
Q ss_pred CCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhc
Q 028655 91 GKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLG 150 (206)
Q Consensus 91 ~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~ 150 (206)
.++++||.+|+.+||..|..++||+..+|++||..+||+++||+|||||||+|+|+.++.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 456679999999999999999999999999999999999999999999999999987554
No 9
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.81 E-value=1.7e-20 Score=125.13 Aligned_cols=59 Identities=32% Similarity=0.547 Sum_probs=54.8
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhh
Q 028655 89 QSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQ 147 (206)
Q Consensus 89 ~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~ 147 (206)
.+++|++||..|+..||..|..++||+..++.+||..+||++.||++||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 45667779999999999999999999999999999999999999999999999999985
No 10
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.81 E-value=1.2e-20 Score=125.48 Aligned_cols=60 Identities=23% Similarity=0.409 Sum_probs=53.0
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhh
Q 028655 89 QSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQR 148 (206)
Q Consensus 89 ~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~ 148 (206)
.+++++.|+..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+.+
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 345666799999999999999999999999999999999999999999999999999863
No 11
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-20 Score=127.00 Aligned_cols=62 Identities=26% Similarity=0.449 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRL 149 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~ 149 (206)
..++++++|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 44566777999999999999999999999999999999999999999999999999998643
No 12
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=3.2e-20 Score=126.27 Aligned_cols=62 Identities=40% Similarity=0.595 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRL 149 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~ 149 (206)
..+++|++|+.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+...
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 44566777999999999999999999999999999999999999999999999999998643
No 13
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.81 E-value=1.8e-20 Score=124.13 Aligned_cols=58 Identities=33% Similarity=0.627 Sum_probs=52.7
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 89 QSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 89 ~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
.+++|+.||..|+..||..|..++||+..++.+||..+||++.||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4566777999999999999999999999999999999999999999999999999997
No 14
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.6e-20 Score=129.16 Aligned_cols=65 Identities=25% Similarity=0.466 Sum_probs=58.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhccc
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLGKD 152 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~~~ 152 (206)
..+++|++|+.+|+..||..|..++||+..++++||..|||++++|+|||||||+|+|++.....
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 44566777999999999999999999999999999999999999999999999999999765443
No 15
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.81 E-value=4.6e-20 Score=127.79 Aligned_cols=62 Identities=34% Similarity=0.488 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRL 149 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~ 149 (206)
..+++|++|+..|+..||..|..++||+..++++||..+||+++||+|||||||+|+|+...
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 44566677999999999999999999999999999999999999999999999999998653
No 16
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=3.3e-20 Score=129.37 Aligned_cols=64 Identities=25% Similarity=0.422 Sum_probs=58.3
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhcc
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLGK 151 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~~ 151 (206)
..+++|++|+.+|+..||..|..++||+..++++||..|||++++|+|||||||+|+|+.....
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHcc
Confidence 4456667799999999999999999999999999999999999999999999999999976543
No 17
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.81 E-value=3.4e-20 Score=125.47 Aligned_cols=62 Identities=32% Similarity=0.470 Sum_probs=57.4
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhc
Q 028655 89 QSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLG 150 (206)
Q Consensus 89 ~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~ 150 (206)
.+++|+.|+..|+..||..|..++||+..++..||..+||++.+|+|||||||+|+|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 45667779999999999999999999999999999999999999999999999999987544
No 18
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.81 E-value=3.2e-20 Score=121.62 Aligned_cols=56 Identities=34% Similarity=0.587 Sum_probs=53.8
Q ss_pred CCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 91 GKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 91 ~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
++++.||.+|+..||..|..++||+..++.+||..+||++.||++||||||+|+|+
T Consensus 2 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 2 KPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 56777999999999999999999999999999999999999999999999999996
No 19
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=3.7e-20 Score=129.20 Aligned_cols=61 Identities=26% Similarity=0.493 Sum_probs=56.7
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQR 148 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~ 148 (206)
..+++|++|+.+|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 4456667799999999999999999999999999999999999999999999999999864
No 20
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=2.6e-20 Score=126.62 Aligned_cols=62 Identities=23% Similarity=0.444 Sum_probs=57.1
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRL 149 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~ 149 (206)
..+++|++|+.+|+.+||..|..++||+..++.+||..+||++.+|++||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 44566677999999999999999999999999999999999999999999999999998643
No 21
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.80 E-value=4.9e-20 Score=126.39 Aligned_cols=63 Identities=29% Similarity=0.492 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhh
Q 028655 87 LGQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRL 149 (206)
Q Consensus 87 ~~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~ 149 (206)
...+++|++|+..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 345667777999999999999999999999999999999999999999999999999998643
No 22
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.80 E-value=2.4e-20 Score=126.22 Aligned_cols=61 Identities=31% Similarity=0.539 Sum_probs=56.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhc
Q 028655 90 SGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLG 150 (206)
Q Consensus 90 ~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~ 150 (206)
++++++||..|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|+....
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccc
Confidence 5567779999999999999999999999999999999999999999999999999997543
No 23
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.1e-20 Score=126.37 Aligned_cols=61 Identities=30% Similarity=0.505 Sum_probs=56.5
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQR 148 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~ 148 (206)
..+++|++|+.+|+.+||..|..++||+..++++||..+||++.||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 4456666799999999999999999999999999999999999999999999999999864
No 24
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.80 E-value=3.1e-20 Score=124.89 Aligned_cols=60 Identities=25% Similarity=0.505 Sum_probs=56.3
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhh
Q 028655 89 QSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQR 148 (206)
Q Consensus 89 ~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~ 148 (206)
.+++|+.||.+|+..||..|..++||+..+++.||..+||++.||++||||||+|+|++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 456677799999999999999999999999999999999999999999999999999864
No 25
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.80 E-value=4.4e-20 Score=128.84 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=55.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhh----cCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEV----ENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~----~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
..+++|+.||.+|+..||..|+. ++||+..+|++||..|||+++||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 45566667999999999999999 999999999999999999999999999999999986
No 26
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.80 E-value=5.1e-20 Score=130.71 Aligned_cols=61 Identities=31% Similarity=0.559 Sum_probs=54.5
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQR 148 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~ 148 (206)
..+++|++|+..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+|+..
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 4456677799999999999999999999999999999999999999999999999999863
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.80 E-value=4.5e-20 Score=121.84 Aligned_cols=58 Identities=33% Similarity=0.563 Sum_probs=54.5
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhh
Q 028655 90 SGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQ 147 (206)
Q Consensus 90 ~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~ 147 (206)
+++++.||.+|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 3567779999999999999999999999999999999999999999999999999985
No 28
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.80 E-value=5.4e-20 Score=124.49 Aligned_cols=61 Identities=33% Similarity=0.507 Sum_probs=56.6
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhc
Q 028655 90 SGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLG 150 (206)
Q Consensus 90 ~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~ 150 (206)
++++++||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+....
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 4566679999999999999999999999999999999999999999999999999987543
No 29
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.7e-20 Score=126.75 Aligned_cols=60 Identities=22% Similarity=0.335 Sum_probs=56.0
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhh
Q 028655 90 SGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRL 149 (206)
Q Consensus 90 ~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~ 149 (206)
++++++||.+|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|++..
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 346677999999999999999999999999999999999999999999999999998754
No 30
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.80 E-value=4.9e-20 Score=124.28 Aligned_cols=62 Identities=29% Similarity=0.450 Sum_probs=57.4
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhcc
Q 028655 90 SGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLGK 151 (206)
Q Consensus 90 ~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~~ 151 (206)
+++|++|+.+|+..||..|..++||+..++..||..+||++.+|++||||||+|+|+...+.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~~ 63 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRES 63 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCTT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchhc
Confidence 46677799999999999999999999999999999999999999999999999999876543
No 31
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=7.9e-20 Score=124.99 Aligned_cols=59 Identities=32% Similarity=0.478 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhh
Q 028655 90 SGKKRRLTATQVQFLERNFEV-ENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQR 148 (206)
Q Consensus 90 ~~kr~r~t~~q~~~Le~~F~~-~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~ 148 (206)
.+++++|+.+|+..||..|.. ++||+..++++||..+||+++||++||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 356777999999999999996 99999999999999999999999999999999999865
No 32
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.79 E-value=4.9e-20 Score=121.66 Aligned_cols=57 Identities=32% Similarity=0.522 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhh
Q 028655 92 KKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQR 148 (206)
Q Consensus 92 kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~ 148 (206)
.|++||.+|+..||..|..++||+..++.+||..+||++++|++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 367799999999999999999999999999999999999999999999999999864
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.79 E-value=8.1e-20 Score=119.47 Aligned_cols=57 Identities=39% Similarity=0.542 Sum_probs=53.7
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhh
Q 028655 89 QSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSR 145 (206)
Q Consensus 89 ~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k 145 (206)
+++++++|+..|+..||..|..++||+..++.+||..+||++.||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 456677799999999999999999999999999999999999999999999999986
No 34
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.79 E-value=6.7e-20 Score=119.41 Aligned_cols=54 Identities=39% Similarity=0.564 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhh
Q 028655 94 RRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQ 147 (206)
Q Consensus 94 ~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~ 147 (206)
+.|+.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 358999999999999999999999999999999999999999999999999985
No 35
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.79 E-value=6.3e-20 Score=128.35 Aligned_cols=61 Identities=31% Similarity=0.535 Sum_probs=53.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQR 148 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~ 148 (206)
..+++|++|+..|+..||..|..++||+..++++||..+||++++|+|||||||+|+|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 3456667799999999999999999999999999999999999999999999999999864
No 36
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.79 E-value=1e-19 Score=127.18 Aligned_cols=61 Identities=34% Similarity=0.530 Sum_probs=56.3
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQR 148 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~ 148 (206)
..+++|++|+..|+..||..|..++||+..++.+||..+||++.||++||||||+|+|++.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 4455566699999999999999999999999999999999999999999999999999864
No 37
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=6.2e-20 Score=130.35 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=54.6
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhcc
Q 028655 93 KRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLGK 151 (206)
Q Consensus 93 r~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~~ 151 (206)
.++||.+|+.+||..|..++||+..+|++||..|||+++||+|||||||+|||++....
T Consensus 15 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHh
Confidence 44799999999999999999999999999999999999999999999999999865433
No 38
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.3e-20 Score=126.47 Aligned_cols=60 Identities=28% Similarity=0.347 Sum_probs=55.9
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhh
Q 028655 90 SGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRL 149 (206)
Q Consensus 90 ~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~ 149 (206)
...|++||.+|+.+||..|..++||+..++++||..+||+++||++||||||+|+|+...
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 345778999999999999999999999999999999999999999999999999998654
No 39
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.79 E-value=3.5e-20 Score=125.37 Aligned_cols=61 Identities=28% Similarity=0.444 Sum_probs=56.8
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhh
Q 028655 89 QSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRL 149 (206)
Q Consensus 89 ~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~ 149 (206)
.+++|+.|+..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+...
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 4566677999999999999999999999999999999999999999999999999998754
No 40
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=1.3e-19 Score=124.19 Aligned_cols=60 Identities=30% Similarity=0.407 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhh
Q 028655 90 SGKKRRLTATQVQFLERNFEV-ENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRL 149 (206)
Q Consensus 90 ~~kr~r~t~~q~~~Le~~F~~-~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~ 149 (206)
.++|++|+.+|+.+||..|.. ++||+..++.+||..+||+++||++||||||+|+|+...
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 355777999999999999995 999999999999999999999999999999999999653
No 41
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.5e-20 Score=127.89 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=56.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhc----CCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVE----NKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQR 148 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~----~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~ 148 (206)
..+++|+.|+.+|+.+||..|+.+ +||+..++++||.++||+++||+|||||||+|+|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 445556669999999999999999 9999999999999999999999999999999999854
No 42
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.79 E-value=8.5e-20 Score=127.37 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=53.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEV-----ENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~-----~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
..+++|+.||.+|+..|| .|.. ++||+..+|++||.+|||+++||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 445666679999999999 7999 999999999999999999999999999999999986
No 43
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-19 Score=123.53 Aligned_cols=61 Identities=30% Similarity=0.451 Sum_probs=56.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQR 148 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~ 148 (206)
..++.+++|+..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+..
T Consensus 8 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 8 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 3455566799999999999999999999999999999999999999999999999999864
No 44
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.78 E-value=2.5e-19 Score=122.80 Aligned_cols=65 Identities=26% Similarity=0.366 Sum_probs=58.9
Q ss_pred CCCCCCCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhccchH
Q 028655 90 SGKKRRLTATQVQFLERNF---EVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLGKDYD 154 (206)
Q Consensus 90 ~~kr~r~t~~q~~~Le~~F---~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~~~~~ 154 (206)
++++++|+..|+.+||.+| ..++||+..++..||..+||++.||++||||||+|+|+.......+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~~e 69 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEE 69 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTTTH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccccccc
Confidence 5667779999999999999 8999999999999999999999999999999999999976655443
No 45
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.78 E-value=2.4e-19 Score=123.11 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=57.7
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhc
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLG 150 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~ 150 (206)
..++.|+.|+.+|+..||..|..++||+..++++||..+||+++||++||||||+|+|+.+..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 345667789999999999999999999999999999999999999999999999999986543
No 46
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.77 E-value=1.8e-19 Score=129.93 Aligned_cols=62 Identities=32% Similarity=0.477 Sum_probs=55.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRL 149 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~ 149 (206)
..+++|++|+..|+.+||..|..++||+..++++||..|||+++||++||||||+|+|+.++
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 34566777999999999999999999999999999999999999999999999999999653
No 47
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.77 E-value=1.5e-19 Score=119.62 Aligned_cols=57 Identities=33% Similarity=0.605 Sum_probs=48.6
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhh
Q 028655 89 QSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSR 145 (206)
Q Consensus 89 ~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k 145 (206)
.++++++|+..|+.+||..|..++||+..++.+||..+||++.||++||||||+|+|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 345566699999999999999999999999999999999999999999999999986
No 48
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=2.3e-19 Score=129.53 Aligned_cols=62 Identities=35% Similarity=0.610 Sum_probs=55.3
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRL 149 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~ 149 (206)
..+++|+.|+..|+..||..|..++||+..++.+||..|||+++||+|||||||+|+|+...
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 45566777999999999999999999999999999999999999999999999999998754
No 49
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.77 E-value=2.8e-19 Score=117.96 Aligned_cols=56 Identities=27% Similarity=0.415 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhh
Q 028655 92 KKRRLTATQVQFLERNFEV---ENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQ 147 (206)
Q Consensus 92 kr~r~t~~q~~~Le~~F~~---~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~ 147 (206)
++++|+.+|+.+||..|.. ++||+..++.+||..+||++.||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4677999999999999999 9999999999999999999999999999999999974
No 50
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=6.3e-19 Score=120.73 Aligned_cols=63 Identities=21% Similarity=0.203 Sum_probs=56.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhc
Q 028655 88 GQSGKKRRLTATQVQFLERNFEV---ENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLG 150 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~---~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~ 150 (206)
..++++++|+..|+.+||.+|.. ++||+..++++||..+||++.||++||||||+|+|+....
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 34555667999999999999987 9999999999999999999999999999999999987554
No 51
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=1.2e-19 Score=124.15 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=54.7
Q ss_pred CCCCCCCCHHHHHHHHHhh-hhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhh
Q 028655 90 SGKKRRLTATQVQFLERNF-EVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQR 148 (206)
Q Consensus 90 ~~kr~r~t~~q~~~Le~~F-~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~ 148 (206)
.+++++++.+|+.+||..| ..++||+..++++||..+||+++||+|||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 3556679999999999999 9999999999999999999999999999999999999754
No 52
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.2e-19 Score=125.81 Aligned_cols=59 Identities=25% Similarity=0.312 Sum_probs=54.4
Q ss_pred CCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhc
Q 028655 92 KKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLG 150 (206)
Q Consensus 92 kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~ 150 (206)
+.++||.+|+.+||..|..++||+..++++||..+||++++|+|||||||+|+|+....
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSC
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHh
Confidence 44559999999999999999999999999999999999999999999999999986543
No 53
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.76 E-value=7.2e-19 Score=124.39 Aligned_cols=61 Identities=28% Similarity=0.403 Sum_probs=56.1
Q ss_pred CCCCCCCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhc
Q 028655 90 SGKKRRLTATQVQFLERNF---EVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLG 150 (206)
Q Consensus 90 ~~kr~r~t~~q~~~Le~~F---~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~ 150 (206)
+++|++|+..|+.+||.+| ..++||+..++++||..+||++.||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 4667779999999999999 899999999999999999999999999999999999987544
No 54
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=3.2e-19 Score=119.19 Aligned_cols=58 Identities=28% Similarity=0.412 Sum_probs=54.6
Q ss_pred CCCCCCCCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 89 QSGKKRRLTATQVQFLERNF---EVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 89 ~~~kr~r~t~~q~~~Le~~F---~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
.++++++|+.+|+.+||.+| ..++||+..++++||..+||++.||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 45667779999999999999 89999999999999999999999999999999999986
No 55
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-19 Score=120.69 Aligned_cols=56 Identities=41% Similarity=0.652 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhcc
Q 028655 96 LTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLGK 151 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~~ 151 (206)
.|..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+|+++...
T Consensus 11 ~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~ 66 (69)
T 2l9r_A 11 MSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSS 66 (69)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSC
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhh
Confidence 78999999999999999999999999999999999999999999999999976544
No 56
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.75 E-value=6.5e-19 Score=123.71 Aligned_cols=60 Identities=25% Similarity=0.374 Sum_probs=54.6
Q ss_pred CCCCCCCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhh
Q 028655 90 SGKKRRLTATQVQFLERNFEV---ENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRL 149 (206)
Q Consensus 90 ~~kr~r~t~~q~~~Le~~F~~---~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~ 149 (206)
++++++|+.+|+.+||.+|.. ++||+..++.+||..+||++.||++||||||+|+|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 345666999999999999999 999999999999999999999999999999999998643
No 57
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.75 E-value=1.9e-18 Score=121.29 Aligned_cols=65 Identities=25% Similarity=0.283 Sum_probs=57.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhccc
Q 028655 88 GQSGKKRRLTATQVQFLERNFEV---ENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLGKD 152 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~---~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~~~ 152 (206)
..+++|++|+.+|+.+|+.+|.. ++||+..++++||..+||++.||++||||||+|+|+....+.
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~~ 73 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQR 73 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHhc
Confidence 44556666999999999999987 599999999999999999999999999999999998755443
No 58
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=1.4e-18 Score=124.93 Aligned_cols=63 Identities=16% Similarity=0.277 Sum_probs=57.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------CCcchhhhcccchHHHhhhhhhc
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELG---------------LQPRQVAIWFQNRRARSRNQRLG 150 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lg---------------l~~~qV~vWFqNRRak~k~~~~~ 150 (206)
..++.|+.|+..|+.+||..|+.++||+..++++||..|+ |++.+|++||||||+|+|++...
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 4455666699999999999999999999999999999999 99999999999999999987543
No 59
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.75 E-value=9.8e-19 Score=116.61 Aligned_cols=53 Identities=21% Similarity=0.333 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhh
Q 028655 96 LTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQR 148 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~ 148 (206)
-+.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999753
No 60
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=7.4e-19 Score=117.14 Aligned_cols=50 Identities=26% Similarity=0.502 Sum_probs=47.1
Q ss_pred HHHHHHHHHhh-hhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhh
Q 028655 98 ATQVQFLERNF-EVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQ 147 (206)
Q Consensus 98 ~~q~~~Le~~F-~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~ 147 (206)
+.|+.+||..| ..++||+..+|.+||.+|||+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 56899999999 678999999999999999999999999999999999974
No 61
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.73 E-value=3e-18 Score=121.27 Aligned_cols=59 Identities=25% Similarity=0.387 Sum_probs=54.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEV---ENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~---~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
.+++++++|+.+|+.+||.+|.. ++||+..++++||..+||+++||++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 34555667999999999999999 999999999999999999999999999999999983
No 62
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.72 E-value=2.8e-18 Score=134.51 Aligned_cols=60 Identities=22% Similarity=0.428 Sum_probs=53.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQ 147 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~ 147 (206)
.++++|+.|+..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+||.
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 556667779999999999999999999999999999999999999999999999999985
No 63
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.72 E-value=3.1e-18 Score=132.36 Aligned_cols=60 Identities=27% Similarity=0.508 Sum_probs=54.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQ 147 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~ 147 (206)
.++++|+.|+..|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|++
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 445556679999999999999999999999999999999999999999999999999985
No 64
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.8e-18 Score=113.58 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhh
Q 028655 95 RLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQ 147 (206)
Q Consensus 95 r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~ 147 (206)
.++..|+..||..|..++||+..+|.+||..+||++++|+|||||||+|.++.
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 36789999999999999999999999999999999999999999999998863
No 65
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.72 E-value=3.2e-18 Score=134.69 Aligned_cols=62 Identities=24% Similarity=0.326 Sum_probs=52.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRL 149 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~ 149 (206)
.++++|++|+..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+|+...
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 44556666999999999999999999999999999999999999999999999999998653
No 66
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=7.7e-18 Score=112.28 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=53.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEV-ENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~-~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
..+|.|+.|+.+|+..|+..|+. ++||+...|+.||.++||++++|+|||||||--.+.
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 45566667999999999999999 999999999999999999999999999999976554
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=120.78 Aligned_cols=61 Identities=18% Similarity=0.296 Sum_probs=55.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHh---------------------CCCcchhhhcccchHHHhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKEL---------------------GLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l---------------------gl~~~qV~vWFqNRRak~k~ 146 (206)
..++.|+.|++.|+.+||..|+.++||+..+|++||..| +|++.+|++||||||+++|+
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 345556669999999999999999999999999999999 79999999999999999998
Q ss_pred hh
Q 028655 147 QR 148 (206)
Q Consensus 147 ~~ 148 (206)
++
T Consensus 85 ~~ 86 (102)
T 2da6_A 85 RQ 86 (102)
T ss_dssp HH
T ss_pred hh
Confidence 63
No 68
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=129.16 Aligned_cols=59 Identities=25% Similarity=0.444 Sum_probs=54.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
.++++|++|+..|+..||..|..++||+..++.+||..+||+++||+|||||||+|+||
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 44555666999999999999999999999999999999999999999999999999996
No 69
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=1.2e-17 Score=112.57 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHhhh---hcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhccchH
Q 028655 95 RLTATQVQFLERNFE---VENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLGKDYD 154 (206)
Q Consensus 95 r~t~~q~~~Le~~F~---~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~~~~~ 154 (206)
+|+.+|+.+|+.+|. .++||+..++++||..+||++.||++||||||+|+|+....+..+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~~ 66 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNR 66 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC------
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhcc
Confidence 599999999999999 999999999999999999999999999999999999977665543
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.69 E-value=1.1e-17 Score=121.18 Aligned_cols=61 Identities=23% Similarity=0.363 Sum_probs=52.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHH------------------hC---CCcchhhhcccchHHHhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKE------------------LG---LQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~------------------lg---l~~~qV~vWFqNRRak~k~ 146 (206)
..++.|+.|+..|+..||..|+.++||+..+|++||.. || |++.+|++||||||+++|+
T Consensus 8 k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~ 87 (99)
T 1lfb_A 8 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 87 (99)
T ss_dssp -----CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHH
Confidence 34455556999999999999999999999999999999 88 9999999999999999987
Q ss_pred hh
Q 028655 147 QR 148 (206)
Q Consensus 147 ~~ 148 (206)
++
T Consensus 88 k~ 89 (99)
T 1lfb_A 88 RH 89 (99)
T ss_dssp CC
T ss_pred hc
Confidence 64
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.67 E-value=2.9e-17 Score=128.16 Aligned_cols=60 Identities=25% Similarity=0.424 Sum_probs=55.3
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQ 147 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~ 147 (206)
.++++|++|+..|+..||..|..++||+..++.+||..+||+++||+|||||||+|+||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 445666779999999999999999999999999999999999999999999999999974
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.65 E-value=5.8e-17 Score=127.39 Aligned_cols=61 Identities=23% Similarity=0.335 Sum_probs=53.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQR 148 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~ 148 (206)
..+++|+.|+..|+..||..|..++||+..+|++||..+||+++||+|||||||+|+|+..
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 4456666799999999999999999999999999999999999999999999999999853
No 73
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.8e-15 Score=99.88 Aligned_cols=48 Identities=15% Similarity=0.386 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhh
Q 028655 98 ATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSR 145 (206)
Q Consensus 98 ~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k 145 (206)
.+|+..|+.+|..+++|+.+++..||..+||+.++|+|||||||++..
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~~ 61 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQY 61 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccccc
Confidence 578999999999999999999999999999999999999999998543
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.52 E-value=8.1e-15 Score=103.49 Aligned_cols=54 Identities=28% Similarity=0.306 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhh
Q 028655 96 LTATQVQFLERNFEV---ENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRL 149 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~---~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~ 149 (206)
|+.+++.+|+.+|.. ++||+..+|++||..+||++.||++||+|+|.|+++...
T Consensus 12 l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 12 LPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 889999999999987 899999999999999999999999999999999998643
No 75
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.50 E-value=4.1e-15 Score=119.67 Aligned_cols=59 Identities=20% Similarity=0.297 Sum_probs=52.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------------CCcchhhhcccchHHHhhh
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELG---------------------LQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lg---------------------l~~~qV~vWFqNRRak~k~ 146 (206)
..++.|+.|+..|+..||..|..++||+..+|++||..++ |++.+|++||||||+++|.
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 3445555699999999999999999999999999999999 9999999999999999875
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.39 E-value=1.7e-13 Score=111.68 Aligned_cols=56 Identities=20% Similarity=0.342 Sum_probs=50.1
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------------CCcchhhhcccchHHHh
Q 028655 89 QSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELG---------------------LQPRQVAIWFQNRRARS 144 (206)
Q Consensus 89 ~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lg---------------------l~~~qV~vWFqNRRak~ 144 (206)
.++.|+.|++.|+.+||..|..++||+..+|++||..++ |++.+|++||||||++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 344444599999999999999999999999999999988 89999999999999875
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.36 E-value=1.8e-13 Score=120.12 Aligned_cols=53 Identities=34% Similarity=0.640 Sum_probs=50.2
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhh
Q 028655 93 KRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSR 145 (206)
Q Consensus 93 r~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k 145 (206)
++.|+..|+..||+.|+.++||+..+|++||.++||+++||+|||||||+|+|
T Consensus 369 ~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 33489999999999999999999999999999999999999999999999986
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=99.07 E-value=7.3e-12 Score=73.88 Aligned_cols=28 Identities=36% Similarity=0.718 Sum_probs=22.9
Q ss_pred chhhhcccchHHHhhhhhhccchHHHHH
Q 028655 131 RQVAIWFQNRRARSRNQRLGKDYDSLKA 158 (206)
Q Consensus 131 ~qV~vWFqNRRak~k~~~~~~~~~~l~~ 158 (206)
+||+|||||||+|||++..+..++.++.
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~~~ 28 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDIIQR 28 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSSSS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHHHH
Confidence 5899999999999999887766655443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.95 E-value=0.0044 Score=41.10 Aligned_cols=39 Identities=31% Similarity=0.470 Sum_probs=36.7
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccc
Q 028655 101 VQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQN 139 (206)
Q Consensus 101 ~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqN 139 (206)
.+.|+++|...+.+.......|+.+..|+..||+-||--
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 478999999999999999999999999999999999953
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=87.50 E-value=0.55 Score=29.23 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhccc
Q 028655 93 KRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQ 138 (206)
Q Consensus 93 r~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFq 138 (206)
+++|+.+........+.. .........++|.++|++...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 456998887666544443 332112266899999999999999964
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=82.46 E-value=2.2 Score=30.46 Aligned_cols=49 Identities=24% Similarity=0.408 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHH
Q 028655 92 KKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRAR 143 (206)
Q Consensus 92 kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak 143 (206)
+|++||.++...+-..+..+.... ..++|+.+|++...|..|..++...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 466799999877767665555543 3468999999999999999877653
No 82
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=82.25 E-value=1 Score=30.70 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHhhhhc-CCCCHHHHHHHHHHhCCCcchhhhccc
Q 028655 94 RRLTATQVQFLERNFEVE-NKLEPERKVQLAKELGLQPRQVAIWFQ 138 (206)
Q Consensus 94 ~r~t~~q~~~Le~~F~~~-~~p~~~~r~~La~~lgl~~~qV~vWFq 138 (206)
++|+.++....-..+... .. ...++|..+|++...|..|..
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHH
Confidence 458888765554444322 22 367899999999999999974
No 83
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=78.55 E-value=1.1 Score=26.02 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccch
Q 028655 95 RLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNR 140 (206)
Q Consensus 95 r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNR 140 (206)
.++.++...+...+... . ...++|+.+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHc
Confidence 36666665555555432 2 35688999999999999998643
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=75.72 E-value=3.1 Score=23.56 Aligned_cols=40 Identities=8% Similarity=0.173 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccc
Q 028655 95 RLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQN 139 (206)
Q Consensus 95 r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqN 139 (206)
.++.++...+...+... + ...++|+.+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 47777765555555432 2 2667899999999999999753
No 85
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=75.36 E-value=5.4 Score=26.59 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=30.0
Q ss_pred CCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhccc
Q 028655 92 KKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQ 138 (206)
Q Consensus 92 kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFq 138 (206)
++++|+.++....-..+. ... ...++|+.+|++...|..|..
T Consensus 19 ~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 19 PLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 345699888655555554 332 256889999999999999974
No 86
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=65.64 E-value=4.8 Score=26.97 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 96 LTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
+++.+..+|.-.|-.. ..-.++|..+|++...|+.+...-|.+.|+
T Consensus 38 L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 6777777777655332 136788999999999999888755555554
No 87
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=60.67 E-value=11 Score=25.89 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHh
Q 028655 93 KRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARS 144 (206)
Q Consensus 93 r~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~ 144 (206)
...+++.+.++|.-.++-- .-.++|..+|+++..|+.+..+-+.|.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3449999999998765322 247899999999999998876444443
No 88
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=60.52 E-value=7.6 Score=24.02 Aligned_cols=46 Identities=15% Similarity=-0.029 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 96 LTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
+++.+..+|...|-.. ..-.++|..+|++...|+.|...-+.+.++
T Consensus 16 L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 16 LTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 7788888888765333 235688999999999999887655554443
No 89
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=60.02 E-value=6.5 Score=26.63 Aligned_cols=46 Identities=20% Similarity=0.103 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhh
Q 028655 96 LTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQ 147 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~ 147 (206)
+++.+..+|.-.++-- .-.++|..+|++...|+.+..+-+.|.+..
T Consensus 28 Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 28 LTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 8999999988864332 247899999999999999887666665543
No 90
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=57.34 E-value=14 Score=25.20 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHhh-hhc-CCCCH-HHHHHHHHHhCCCcchhhhccc
Q 028655 93 KRRLTATQVQFLERNF-EVE-NKLEP-ERKVQLAKELGLQPRQVAIWFQ 138 (206)
Q Consensus 93 r~r~t~~q~~~Le~~F-~~~-~~p~~-~~r~~La~~lgl~~~qV~vWFq 138 (206)
+++|+.++....-..+ ... .+++. ....++|..+|++...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4568988765444433 322 12221 3567899999999999999964
No 91
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=57.34 E-value=13 Score=27.11 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=36.8
Q ss_pred CCCCCCCCHHHHHHHHHhh-hhcCCCCHHHHHHHHH----Hh--CCCcchhhhcccchH
Q 028655 90 SGKKRRLTATQVQFLERNF-EVENKLEPERKVQLAK----EL--GLQPRQVAIWFQNRR 141 (206)
Q Consensus 90 ~~kr~r~t~~q~~~Le~~F-~~~~~p~~~~r~~La~----~l--gl~~~qV~vWFqNRR 141 (206)
+++|+++|.+|...+-..+ +.++..+.. +||. ++ +++...|..|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 4567779999999998888 667766543 4555 77 778888999987643
No 92
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=56.12 E-value=5.6 Score=28.45 Aligned_cols=36 Identities=31% Similarity=0.479 Sum_probs=23.0
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhc
Q 028655 101 VQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLG 150 (206)
Q Consensus 101 ~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~ 150 (206)
+...+-.|+.|+||..+ | .+|- -.|||.+||.++..
T Consensus 15 vRiIkiLyQSNPyP~pe---------G--TRqa---RRNRRRRWR~RQrQ 50 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPE---------G--TRQA---RRNRRRRWRERQRQ 50 (115)
T ss_dssp HHHHHHHHHSSCCCCCC---------C--CTTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCC---------C--chhh---hHhHHHHHHHHHHH
Confidence 34455568999999754 2 1221 15999999976543
No 93
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=55.79 E-value=24 Score=24.76 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 96 LTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
+++.+..++...|.... .-.++|..+|++...|+.|...-|.+.++
T Consensus 23 L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 23 LTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp SCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 77888888877654332 35788999999999999998766666554
No 94
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=55.15 E-value=10 Score=24.87 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 95 RLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 95 r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
.+++.+..+|...++ .+ .-.++|..+|++...|+.+..+-+.|.+.
T Consensus 21 ~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 21 QLTPRERDILKLIAQ--GL----PNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GSCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 389999999888532 22 46788999999999999887655555443
No 95
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=52.12 E-value=12 Score=23.32 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhh
Q 028655 95 RLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSR 145 (206)
Q Consensus 95 r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k 145 (206)
.+++.+..+|...++ .+ .-.++|..+|++...|..+...-+.+.+
T Consensus 11 ~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 11 LLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 388999999888432 22 3568999999999999988765444444
No 96
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=51.20 E-value=20 Score=22.72 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=19.9
Q ss_pred cchHHHHHhhhhhhHHHHhHHHHHHHHHHHHH
Q 028655 151 KDYDSLKAVYDKLKDDYDNLLKEKQVLQNEVV 182 (206)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (206)
.....|......+..++..|..+...|+.+|.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556666677777777777777766553
No 97
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=50.65 E-value=14 Score=22.97 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 96 LTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
+++.+..+|...|-...+-. ..-.++|..+|++...|+.+...-+.+.+.
T Consensus 6 L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred CCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 67888888888873211111 235778999999999999887654544443
No 98
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=49.89 E-value=32 Score=24.81 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=32.7
Q ss_pred CCCCCCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCCcch
Q 028655 91 GKKRRLTATQVQFLERNFEV-----ENKLEPERKVQLAKELGLQPRQ 132 (206)
Q Consensus 91 ~kr~r~t~~q~~~Le~~F~~-----~~~p~~~~r~~La~~lgl~~~q 132 (206)
.++..+|.+|+..|...|.. +.+.+..+...+.+.+|+.+..
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~ 51 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPD 51 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCH
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccH
Confidence 34556999999999999974 4589999988888888876543
No 99
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=49.59 E-value=16 Score=23.06 Aligned_cols=49 Identities=6% Similarity=0.076 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhh
Q 028655 96 LTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSR 145 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k 145 (206)
+++.+..+|...|-.... ....-.++|..+|++...|+.|...-+.+.+
T Consensus 11 L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 788888999888752100 0113568899999999999998765554444
No 100
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=49.40 E-value=40 Score=20.88 Aligned_cols=31 Identities=29% Similarity=0.255 Sum_probs=16.8
Q ss_pred chHHHHHhhhhhhHHHHhHHHHHHHHHHHHH
Q 028655 152 DYDSLKAVYDKLKDDYDNLLKEKQVLQNEVV 182 (206)
Q Consensus 152 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (206)
....|......+..++..|..+...|..++.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555566566655555555543
No 101
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=49.16 E-value=33 Score=23.95 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 96 LTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
+++.+..+|...|... ..-.++|..+|++...|+.+...-|.+.|+
T Consensus 26 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 26 LTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 6777777777665333 135788999999999999988766666654
No 102
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=49.04 E-value=11 Score=24.04 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 96 LTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
+++.+..+|.-.|. .+ ...++|..+|++...|+.+...-+.|.+.
T Consensus 17 L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 67788888877432 22 24689999999999999887655555543
No 103
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=47.99 E-value=37 Score=22.85 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCC--Ccchhhhccc
Q 028655 93 KRRLTATQVQFLERNFEV-----ENKLEPERKVQLAKELGL--QPRQVAIWFQ 138 (206)
Q Consensus 93 r~r~t~~q~~~Le~~F~~-----~~~p~~~~r~~La~~lgl--~~~qV~vWFq 138 (206)
...++.+++..|...|.. +.+.+..+...+.+.+|. +..+|+.+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 334899999999999864 458999999998888875 5566776663
No 104
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=47.67 E-value=39 Score=22.90 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=13.8
Q ss_pred cchHHHHHhhhhhhHHHHhHHHHHHHHHHHH
Q 028655 151 KDYDSLKAVYDKLKDDYDNLLKEKQVLQNEV 181 (206)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (206)
.....|..++..|...-..|..+...|+.-+
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333
No 105
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=47.61 E-value=17 Score=22.91 Aligned_cols=39 Identities=3% Similarity=0.087 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchH
Q 028655 96 LTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRR 141 (206)
++.+.+..+......+ ..+||..+|++...|..|-.+++
T Consensus 11 ~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 11 VAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcCCC
Confidence 7888888887654332 57899999999999999987754
No 106
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=47.02 E-value=42 Score=22.22 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=23.8
Q ss_pred HHHhhhhhhccchHHHHHhhhhhhHHHHhHHHHHHHHHHHHHHh
Q 028655 141 RARSRNQRLGKDYDSLKAVYDKLKDDYDNLLKEKQVLQNEVVIN 184 (206)
Q Consensus 141 Rak~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (206)
|.+.|++. ....+......|..++..|..+...|..|+...
T Consensus 29 rSR~krk~---r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 29 KSRDKAKM---RNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455442 333344455667777777777777777766544
No 107
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=46.75 E-value=7 Score=25.63 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=22.3
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhh
Q 028655 101 VQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRL 149 (206)
Q Consensus 101 ~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~ 149 (206)
+...+-.|+.|+||..+--.. | -.|||.+|+..+.
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQr 52 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQR 52 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHH
Confidence 445566689999998541111 1 1589999987643
No 108
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=46.05 E-value=45 Score=20.73 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=19.5
Q ss_pred cchHHHHHhhhhhhHHHHhHHHHHHHHHHHHH
Q 028655 151 KDYDSLKAVYDKLKDDYDNLLKEKQVLQNEVV 182 (206)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (206)
.....|......+..++..|..+...|..++.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666666666666666654
No 109
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=45.68 E-value=17 Score=25.88 Aligned_cols=45 Identities=13% Similarity=0.097 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 96 LTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
+++.+..+|. .|- ....-.++|..+|++...|+.+...-|.+.|+
T Consensus 110 L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 110 FSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp SCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 5666666666 332 22246789999999999999887655555544
No 110
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=44.69 E-value=26 Score=23.00 Aligned_cols=50 Identities=8% Similarity=0.169 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 96 LTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
+++.+..+|...|-.... ....-.++|..+|++...|+.+...-+.+.|.
T Consensus 19 L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 788888888887742100 01236788999999999999987655555543
No 111
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=43.71 E-value=52 Score=20.65 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=14.8
Q ss_pred chHHHHHhhhhhhHHHHhHHHHHHHHHHHH
Q 028655 152 DYDSLKAVYDKLKDDYDNLLKEKQVLQNEV 181 (206)
Q Consensus 152 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (206)
....+......+..++..|..+...|..|+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555444
No 112
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=42.11 E-value=53 Score=20.28 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=32.5
Q ss_pred HHHhhhhhhccchHHHHHhhhhhhHHHHhHHHHHHHHHHHH
Q 028655 141 RARSRNQRLGKDYDSLKAVYDKLKDDYDNLLKEKQVLQNEV 181 (206)
Q Consensus 141 Rak~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (206)
|.+.+-...+...+.+...+..+..+-..|..+...|+..|
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444466788888899999999999999999998888765
No 113
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=41.84 E-value=40 Score=20.57 Aligned_cols=33 Identities=15% Similarity=0.452 Sum_probs=26.6
Q ss_pred ccchHHHHHhhhhhhHHHHhHHHHHHHHHHHHH
Q 028655 150 GKDYDSLKAVYDKLKDDYDNLLKEKQVLQNEVV 182 (206)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (206)
..+++.|+.++..+......|..+.+.++..+.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888888888888888877664
No 114
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=41.46 E-value=16 Score=24.21 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 96 LTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
+++.+..+|.-.++ .+ .-.++|..+|++...|+.+..+-+.|.+.
T Consensus 30 Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 30 LTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp CCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 88999999887543 22 24578999999999999887755555543
No 115
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=40.48 E-value=34 Score=22.82 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccc
Q 028655 94 RRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQN 139 (206)
Q Consensus 94 ~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqN 139 (206)
..+|+.+..+|.-.++ .+ ...++|..||+++..|+....+
T Consensus 28 ~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~ 67 (90)
T 3ulq_B 28 DVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTS 67 (90)
T ss_dssp -CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 3499999999988763 22 3678999999999999876654
No 116
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=39.73 E-value=9.8 Score=22.87 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||+.+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999987653
No 117
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=39.63 E-value=28 Score=24.33 Aligned_cols=41 Identities=7% Similarity=0.167 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccc
Q 028655 94 RRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQN 139 (206)
Q Consensus 94 ~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqN 139 (206)
..++.++...+...+... . ...++|+.+|++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 458888777666666433 2 2567899999999999999864
No 118
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=39.00 E-value=22 Score=20.86 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhccc
Q 028655 98 ATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQ 138 (206)
Q Consensus 98 ~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFq 138 (206)
+++...+...+.. .+ ...++|..+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~-g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKM-GY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHT-TC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 5555555554432 22 356789999999999998874
No 119
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=38.98 E-value=24 Score=24.96 Aligned_cols=23 Identities=4% Similarity=0.031 Sum_probs=18.3
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||..+|++...|..|-.+++
T Consensus 87 q~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 87 QKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp HHHHHHHHCSCTTHHHHHHHTSS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 45788889999999998887654
No 120
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=38.76 E-value=10 Score=22.90 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||+.+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 56799999999999999987643
No 121
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=38.72 E-value=23 Score=23.29 Aligned_cols=43 Identities=12% Similarity=0.167 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCCcchhhhccc
Q 028655 96 LTATQVQFLERNFEV-----ENKLEPERKVQLAKELGLQPRQVAIWFQ 138 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~-----~~~p~~~~r~~La~~lgl~~~qV~vWFq 138 (206)
++.++...+...|.. +.+.+..+...+...+|++...+..+|.
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 678889999999864 4478888888888888988877766553
No 122
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=37.58 E-value=73 Score=19.83 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=14.4
Q ss_pred chHHHHHhhhhhhHHHHhHHHHHHHHHHHH
Q 028655 152 DYDSLKAVYDKLKDDYDNLLKEKQVLQNEV 181 (206)
Q Consensus 152 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (206)
....|......+..++..|..+...|..++
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555554444443
No 123
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=37.15 E-value=11 Score=24.17 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999999987654
No 124
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=36.82 E-value=11 Score=23.00 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCcchhhhcccchHH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRRA 142 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRRa 142 (206)
..+||+.+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 577999999999999999987543
No 125
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=36.65 E-value=29 Score=25.62 Aligned_cols=46 Identities=11% Similarity=-0.098 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 96 LTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
+++.+..+|.-.|-.. ..-.++|..+|+++..|+.+...-|.+.|+
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 6677777776655322 135688999999999999988765555554
No 126
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=36.21 E-value=12 Score=23.24 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||+.+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999987654
No 127
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=35.93 E-value=19 Score=23.46 Aligned_cols=43 Identities=26% Similarity=0.331 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCCcchhhhccc
Q 028655 96 LTATQVQFLERNFEV-----ENKLEPERKVQLAKELGLQPRQVAIWFQ 138 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~-----~~~p~~~~r~~La~~lgl~~~qV~vWFq 138 (206)
++.+++..|...|.. +.+.+..+...+...+|++...|..+|.
T Consensus 21 l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 21 GDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 788889999999864 4578888888888889988887777764
No 128
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=35.78 E-value=73 Score=21.70 Aligned_cols=55 Identities=20% Similarity=0.191 Sum_probs=26.5
Q ss_pred CCCcchhhhcccchHHHhhh-------hhhccchHHHHHhhhhhhHHHHhHHHHHHHHHHHH
Q 028655 127 GLQPRQVAIWFQNRRARSRN-------QRLGKDYDSLKAVYDKLKDDYDNLLKEKQVLQNEV 181 (206)
Q Consensus 127 gl~~~qV~vWFqNRRak~k~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (206)
||+..+|..|=|-||.-.-+ .........|..+...+..+-+.+..++..+..++
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~ 78 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARER 78 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776655532111 11223334444444444444444555554444433
No 129
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=34.71 E-value=60 Score=22.50 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC--CCcchhhhcccchH
Q 028655 94 RRLTATQVQFLERNFEVENKLEPERKVQLAKELG--LQPRQVAIWFQNRR 141 (206)
Q Consensus 94 ~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lg--l~~~qV~vWFqNRR 141 (206)
..+++++...+... ..++..+. .+|+..+| ++...|..|+....
T Consensus 59 ~~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g 104 (141)
T 1u78_A 59 KALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSG 104 (141)
T ss_dssp CSSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCC
Confidence 34788887777666 44554444 46778888 68888999986443
No 130
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=34.25 E-value=31 Score=26.28 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 96 LTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
+++.+..+|...|-.. ....++|..+|++...|+.+...-|.+.|+
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 6777778887766332 246788999999999999888755555554
No 131
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=34.07 E-value=56 Score=20.49 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhhhhhccch
Q 028655 96 LTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLGKDY 153 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~~~~~~~~ 153 (206)
++.....+|..+=+.+-.....-.+.|...---++..|-.+..|.|+-||-....+-|
T Consensus 5 ls~~e~~vLDlYe~SnIrIP~DIIEdl~~~~L~te~EVmnYiEnqR~~WKLEN~KKly 62 (67)
T 2bnk_A 5 LSACEVAVLDLYEQSNIRIPSDIIEDLVNQRLQSEQEVLNYIETQRTYWKLENQKKLY 62 (67)
T ss_dssp CCSSHHHHHHHHHHTTCCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred hhHHHHHHHHHHHHcCCcCcHHHHHHHHHHhhhhHHHHHHHHHhhHhHHhhhhhHHHH
Confidence 4455566776655666677778888887555457788999999999999986655544
No 132
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=33.95 E-value=14 Score=22.95 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||+.+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999987643
No 133
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=33.33 E-value=15 Score=22.91 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCcchhhhcccch
Q 028655 119 KVQLAKELGLQPRQVAIWFQNR 140 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNR 140 (206)
..+||..+|++...|..|..++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5679999999999999998765
No 134
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=33.32 E-value=27 Score=23.14 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCCcchhhhccc
Q 028655 96 LTATQVQFLERNFEV-----ENKLEPERKVQLAKELGLQPRQVAIWFQ 138 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~-----~~~p~~~~r~~La~~lgl~~~qV~vWFq 138 (206)
++.++...|+..|.. +.+.+..+...+...+|++...|+.+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567888889998854 3478888888888888988877776653
No 135
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=32.77 E-value=58 Score=21.09 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=11.3
Q ss_pred HHHHhhhhhhHHHHhHHHHHHHHHHHH
Q 028655 155 SLKAVYDKLKDDYDNLLKEKQVLQNEV 181 (206)
Q Consensus 155 ~l~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (206)
.+...+..+..++..|..+...|..++
T Consensus 40 ~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 40 TLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444443
No 136
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=32.61 E-value=15 Score=22.87 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||..+|++...|..|...++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 56799999999999999987653
No 137
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=32.11 E-value=15 Score=22.21 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCcchhhhcccchHH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRRA 142 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRRa 142 (206)
..+||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999876543
No 138
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=31.59 E-value=19 Score=22.08 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCcchhhhcc
Q 028655 119 KVQLAKELGLQPRQVAIWF 137 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWF 137 (206)
..+||+.+|++..-|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 5789999999999999998
No 139
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.22 E-value=21 Score=21.37 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=21.4
Q ss_pred HHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
-.++|..+|+++..|+.+..+=+.|.+.
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 3578999999999999887655544443
No 140
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=30.39 E-value=17 Score=22.31 Aligned_cols=22 Identities=23% Similarity=0.045 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCcchhhhcccch
Q 028655 119 KVQLAKELGLQPRQVAIWFQNR 140 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNR 140 (206)
..+||+.+|++...|..|..++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 5679999999999999998764
No 141
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=30.20 E-value=0.96 Score=34.36 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=20.7
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCH
Q 028655 88 GQSGKKRRLTATQVQFLERNFEVENKLEP 116 (206)
Q Consensus 88 ~~~~kr~r~t~~q~~~Le~~F~~~~~p~~ 116 (206)
+.++.|+.|+..|++.|+..|+.++||..
T Consensus 135 ~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 135 GGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp ------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 33455555999999999999999999874
No 142
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=30.16 E-value=17 Score=23.12 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 46799999999999999987754
No 143
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=29.88 E-value=18 Score=22.49 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999987755
No 144
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=29.53 E-value=18 Score=23.89 Aligned_cols=23 Identities=22% Similarity=0.661 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||+.+|++...|..|..+++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 57799999999999999987643
No 145
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=29.37 E-value=45 Score=20.37 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=12.2
Q ss_pred chHHHHHhhhhhhHHHHhHHHHHHHHH
Q 028655 152 DYDSLKAVYDKLKDDYDNLLKEKQVLQ 178 (206)
Q Consensus 152 ~~~~l~~~~~~~~~~~~~~~~~~~~l~ 178 (206)
..+.|......+..++..|..+...|.
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 146
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=29.28 E-value=1.4e+02 Score=21.28 Aligned_cols=62 Identities=11% Similarity=0.020 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhccc
Q 028655 72 SLDNEDNAYVDFDGWLGQSGKKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQ 138 (206)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~kr~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFq 138 (206)
+...--................+.++.++...+...+.... ...++|+.+|++...|..|++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~s~e~r~~ii~l~~~G~-----s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 2 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGV-----RPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp CCSCCCCSCSSCCCCCCTTSSSCSSCHHHHHHHHHHHHHTC-----CHHHHHHHHTCCSHHHHHHHC
T ss_pred CcchhhhcchhhhhcCCcCCCCCCCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
No 147
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=29.01 E-value=21 Score=23.00 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||+.+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999997754
No 148
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=28.61 E-value=20 Score=23.24 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCcchhhhcccc
Q 028655 119 KVQLAKELGLQPRQVAIWFQN 139 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqN 139 (206)
..+||+.||++..-|-.|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 678999999999999999854
No 149
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=28.56 E-value=23 Score=27.45 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCcchhhhcccchH
Q 028655 118 RKVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 118 ~r~~La~~lgl~~~qV~vWFqNRR 141 (206)
...+||+.+|++...|..|...++
T Consensus 32 t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 32 SQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp CSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 356899999999999999997754
No 150
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=28.09 E-value=22 Score=25.87 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
...+|+.+|++..+++.|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 57789999999999999985444
No 151
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.94 E-value=45 Score=20.73 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=28.3
Q ss_pred HHhhhhhhccchHHHHHhhhhhhHHHHhHHHHHHHHHHHHH
Q 028655 142 ARSRNQRLGKDYDSLKAVYDKLKDDYDNLLKEKQVLQNEVV 182 (206)
Q Consensus 142 ak~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (206)
.+.+-...+...+.|...+..+..+-..|..+...|+..|.
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566777888888888888888888888888776654
No 152
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=27.87 E-value=24 Score=22.54 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999987643
No 153
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=27.42 E-value=91 Score=20.88 Aligned_cols=44 Identities=7% Similarity=-0.097 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCC-------Ccchhhhccc
Q 028655 95 RLTATQVQFLERNFEVENKLEPERKVQLAKELGL-------QPRQVAIWFQ 138 (206)
Q Consensus 95 r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl-------~~~qV~vWFq 138 (206)
.+++++...+......++..+..+......+.|+ +...|..|+.
T Consensus 75 ~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 75 IATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVR 125 (128)
T ss_dssp SSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHH
Confidence 4777787888887777666665543332222275 6777888875
No 154
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=26.67 E-value=60 Score=25.21 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhh
Q 028655 94 RRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSR 145 (206)
Q Consensus 94 ~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k 145 (206)
..+|+.+.++|.-.++-. .-.++|..+|+++..|+....+-+.|..
T Consensus 174 ~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 174 QMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 349999999987754322 3578899999999999988765444443
No 155
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=26.61 E-value=67 Score=20.02 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCC--cch---hhhcc
Q 028655 96 LTATQVQFLERNFEV-----ENKLEPERKVQLAKELGLQ--PRQ---VAIWF 137 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~-----~~~p~~~~r~~La~~lgl~--~~q---V~vWF 137 (206)
++++++..|...|.. +.+.+..+...+...+|.. ... |..+|
T Consensus 8 l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 59 (86)
T 1j7q_A 8 LGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEA 59 (86)
T ss_dssp CSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 788889999999853 4588999988888888854 445 55555
No 156
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=26.30 E-value=1.3e+02 Score=19.30 Aligned_cols=43 Identities=23% Similarity=0.204 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhh
Q 028655 93 KRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAI 135 (206)
Q Consensus 93 r~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~v 135 (206)
...+|.++...|+.....-+--+...-+.+|..+|=+..+|+.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~ 50 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTT 50 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHH
Confidence 3459999999999997755532334456788888866666653
No 157
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=25.60 E-value=23 Score=22.23 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||+.+|++...|..|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999987643
No 158
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=25.55 E-value=24 Score=22.30 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999987654
No 159
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=25.15 E-value=24 Score=22.38 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||..+|++...|..|..+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46799999999999999987653
No 160
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=24.56 E-value=32 Score=21.42 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..++|..||++...|..|-.+..
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTTC
T ss_pred HHHHHHHHCcCHHHHHHHHHCCC
Confidence 46789999999999999987654
No 161
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=24.35 E-value=55 Score=25.88 Aligned_cols=46 Identities=15% Similarity=0.033 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 95 RLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 95 r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
.+++.+..+|.-.+ ..+ .-.++|..+|+++..|++...+-|.|.|.
T Consensus 197 ~L~~~erevl~L~~--~G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 197 ILSEREKEILRCIR--KGL----SSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp SSCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 48999999888864 222 36788999999999999887655555554
No 162
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=24.12 E-value=38 Score=24.68 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=35.1
Q ss_pred HHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHh
Q 028655 100 QVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARS 144 (206)
Q Consensus 100 q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~ 144 (206)
-+..-...|....| . .....||+..|++...|-.+|.+|-.-.
T Consensus 20 Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L~ 62 (194)
T 2q24_A 20 ILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREALI 62 (194)
T ss_dssp HHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHHH
Confidence 45566677888888 5 6888999999999999999999975433
No 163
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=23.39 E-value=26 Score=22.93 Aligned_cols=23 Identities=9% Similarity=0.281 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||+.+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 57899999999999999997653
No 164
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=22.69 E-value=28 Score=22.51 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||..+|++...|..|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999987753
No 165
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=22.59 E-value=1.3e+02 Score=20.32 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHhhh
Q 028655 96 LTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRN 146 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~k~ 146 (206)
+++.+..++.-.|-...+ ....-.++|..+|++...|+.....-+.+.|+
T Consensus 20 Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 677777777777743211 11246788999999999998876544444443
No 166
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=22.49 E-value=29 Score=23.15 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||+.+|++...|..|..+++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 67899999999999999988753
No 167
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=22.47 E-value=1.5e+02 Score=20.01 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=27.5
Q ss_pred CCCCCHHH-HHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcc
Q 028655 93 KRRLTATQ-VQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWF 137 (206)
Q Consensus 93 r~r~t~~q-~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWF 137 (206)
+++++.+. +.++...+.-. ....++|+..+|+..+|..|-
T Consensus 30 ~rrWs~~~Kl~VV~~~~~g~-----~s~~e~arry~Is~s~i~~W~ 70 (95)
T 2jrt_A 30 TRRWVASRKAAVVKAVIHGL-----ITEREALDRYSLSEEEFALWR 70 (95)
T ss_dssp CCCCCHHHHHHHHHHHHTTS-----SCHHHHHHHTTCCHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHcCC-----CCHHHHHHHhCCCHHHHHHHH
Confidence 44577765 44555554322 135688999999999999995
No 168
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=22.39 E-value=32 Score=22.56 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCcchhhhcccchH
Q 028655 119 KVQLAKELGLQPRQVAIWFQNRR 141 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNRR 141 (206)
..+||..+|++...|..|..+++
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999987654
No 169
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.06 E-value=1.5e+02 Score=18.39 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=30.3
Q ss_pred hhhhhccchHHHHHhhhhhhHHHHhHHHHHHHHHHHHH
Q 028655 145 RNQRLGKDYDSLKAVYDKLKDDYDNLLKEKQVLQNEVV 182 (206)
Q Consensus 145 k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (206)
+-.......+.|...+..+...-..|..|...|+.-+.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566778888889999999998999999888876553
No 170
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=21.67 E-value=31 Score=21.82 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCcchhhhcccch
Q 028655 119 KVQLAKELGLQPRQVAIWFQNR 140 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqNR 140 (206)
..+||..+|++...|..|..++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHhCcCHHHHHHHHCCC
Confidence 5688999999999999998765
No 171
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=21.54 E-value=98 Score=21.37 Aligned_cols=44 Identities=16% Similarity=0.343 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHhhhh------cCCCCHHHHHHHHHHhCC--Ccchhhhccc
Q 028655 95 RLTATQVQFLERNFEV------ENKLEPERKVQLAKELGL--QPRQVAIWFQ 138 (206)
Q Consensus 95 r~t~~q~~~Le~~F~~------~~~p~~~~r~~La~~lgl--~~~qV~vWFq 138 (206)
.++.+++..|...|.. +.+.+..+-..+...+|+ +...|+.+|.
T Consensus 11 ~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 11 QLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3889999999999863 457888888888888874 5556666664
No 172
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=21.07 E-value=63 Score=20.08 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhC-CCcchhhhccc
Q 028655 96 LTATQVQFLERNFEV-----ENKLEPERKVQLAKELG-LQPRQVAIWFQ 138 (206)
Q Consensus 96 ~t~~q~~~Le~~F~~-----~~~p~~~~r~~La~~lg-l~~~qV~vWFq 138 (206)
+++++...|...|.. +.+.+..+...+...+| ++...|..+|.
T Consensus 5 ~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 5 DTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp -CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 688888999999863 34678888887777776 45555665553
No 173
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=21.00 E-value=84 Score=24.29 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHHHh
Q 028655 94 RRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARS 144 (206)
Q Consensus 94 ~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRak~ 144 (206)
..+|+.+.++|.-.++ .+ .-.++|..+|+++..|+...++-+.|.
T Consensus 172 ~~Lt~~e~~vl~~~~~--g~----s~~eIa~~l~is~~tV~~~~~~~~~kl 216 (234)
T 1l3l_A 172 AWLDPKEATYLRWIAV--GK----TMEEIADVEGVKYNSVRVKLREAMKRF 216 (234)
T ss_dssp CCCCHHHHHHHHHHTT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 4599999999877542 22 357889999999999998776544443
No 174
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=20.97 E-value=1.7e+02 Score=18.72 Aligned_cols=42 Identities=12% Similarity=0.088 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHh-CCCcchhh
Q 028655 93 KRRLTATQVQFLERNFEVENKLEPERKVQLAKEL-GLQPRQVA 134 (206)
Q Consensus 93 r~r~t~~q~~~Le~~F~~~~~p~~~~r~~La~~l-gl~~~qV~ 134 (206)
+..+|.++-..|+.....-..-....-..||..+ |=+..||+
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr 60 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCI 60 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHH
Confidence 3449999999999887765443456677788887 45555554
No 175
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=20.70 E-value=26 Score=16.86 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=10.5
Q ss_pred cchhhhcccchHHH
Q 028655 130 PRQVAIWFQNRRAR 143 (206)
Q Consensus 130 ~~qV~vWFqNRRak 143 (206)
...|-+-++|||.-
T Consensus 3 kkpvpiiycnrrtg 16 (21)
T 8tfv_A 3 KKPVPIIYCNRRTG 16 (26)
T ss_dssp CCCCCCEEEEGGGT
T ss_pred CCcccEEEEcCccc
Confidence 45677889999863
No 176
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=20.68 E-value=38 Score=25.13 Aligned_cols=41 Identities=12% Similarity=0.044 Sum_probs=31.8
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHhCCCcchhhhcccchHH
Q 028655 101 VQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRA 142 (206)
Q Consensus 101 ~~~Le~~F~~~~~p~~~~r~~La~~lgl~~~qV~vWFqNRRa 142 (206)
+......|....|-. .....||+..|++...|-.+|.++..
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~ 74 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDD 74 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHH
Confidence 455566688777644 34677899999999999999999854
No 177
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=20.58 E-value=34 Score=21.75 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=18.6
Q ss_pred HHHHHHHhCCCcchhhhcccc
Q 028655 119 KVQLAKELGLQPRQVAIWFQN 139 (206)
Q Consensus 119 r~~La~~lgl~~~qV~vWFqN 139 (206)
..+||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 567899999999999999876
No 178
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=20.49 E-value=65 Score=23.27 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHhhhh-----c--CCCCHHHHHHHHHHhCCC--cchhhhcc
Q 028655 95 RLTATQVQFLERNFEV-----E--NKLEPERKVQLAKELGLQ--PRQVAIWF 137 (206)
Q Consensus 95 r~t~~q~~~Le~~F~~-----~--~~p~~~~r~~La~~lgl~--~~qV~vWF 137 (206)
.+|.+|+..|+.+|.. + .+.+..+...+.+.||+. ..+|+..+
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t~~el~~~~ 53 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG 53 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCCHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3789999999999863 2 378888888888888875 44555444
No 179
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=20.25 E-value=33 Score=17.91 Aligned_cols=11 Identities=45% Similarity=0.730 Sum_probs=8.1
Q ss_pred cchHHHhhhhh
Q 028655 138 QNRRARSRNQR 148 (206)
Q Consensus 138 qNRRak~k~~~ 148 (206)
.|||-+|+..+
T Consensus 7 RnRRRRWR~Rq 17 (26)
T 1etf_B 7 RNRRRRWRERQ 17 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 48888888754
No 180
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=20.04 E-value=82 Score=23.07 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCCcc
Q 028655 95 RLTATQVQFLERNFEV-----ENKLEPERKVQLAKELGLQPR 131 (206)
Q Consensus 95 r~t~~q~~~Le~~F~~-----~~~p~~~~r~~La~~lgl~~~ 131 (206)
.||.+|+..|+..|.. +.+.+..+...+...+|+.+.
T Consensus 4 ~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 4 NLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 4888999999999863 447888888888888876543
Done!