Citrus Sinensis ID: 028656

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFHYM
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHcccEEEEEEEEEcccccHHHHHHHHHHHccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccEEEEEccccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHccccEEEEEEcccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
mescflntlktqPLWLLALFTIGSLSVLRLAFVILNWVYVNFLrpaknlrkygswalvtgptdgigKSFAFQLAKTGLNLvlvgrnpdklkdvSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINnvgisypyarfFHEVDQVLLKNLIKVNVEGTTKVTQAVLPgmlkrkkglsmlNIGKAELMCSVRFHYM
Flexible Loop (DISEMBL)
MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAkyaktqiksvvvDFSGDLDEGVERIKEaiegldvgvLINNVGISYPYARFFHEVDQVLLKNLIKVnvegttkvtqavlpgmlkrkkglsmlnigkAELMCSVRFHYM
Low Complexity Region (SEG)
MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFHYM
Disordered region (IsUnstruct)
***CFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH**
Disordered Region (DISOPRED)
***CF**TLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFHYM
Disordered Region (DISEMBL)
MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFHYM
Disordered Region (DISPRO)
MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFHY*
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFHYM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
Q8L9C4	318	Very-long-chain 3-oxoacyl	yes	no	0.975	0.632	0.669	1e-78
Q9FYL6	312	Very-long-chain 3-oxoacyl	no	no	0.873	0.576	0.483	1e-42
A8N6B4	339	Very-long-chain 3-oxoacyl	N/A	no	0.888	0.539	0.407	3e-36
Q2UET3	346	Very-long-chain 3-oxoacyl	yes	no	0.922	0.549	0.391	2e-33
Q5B0R9	346	Very-long-chain 3-oxoacyl	yes	no	0.733	0.436	0.458	3e-32
A2QCH3	346	Very-long-chain 3-oxoacyl	yes	no	0.893	0.531	0.395	6e-32
Q6P7R8	312	Estradiol 17-beta-dehydro	yes	no	0.713	0.471	0.477	8e-32
Q1DNC5	349	Very-long-chain 3-oxoacyl	N/A	no	0.820	0.484	0.406	1e-31
B2B3L4	340	Very-long-chain 3-oxoacyl	yes	no	0.873	0.529	0.421	4e-31
A6SG70	331	Very-long-chain 3-oxoacyl	N/A	no	0.708	0.441	0.443	5e-31

>sp|Q8L9C4|KCR1_ARATH Very-long-chain 3-oxoacyl-CoA reductase 1 OS=Arabidopsis thaliana GN=KCR1 PE=1 SV=1

 Score =  292 bits (747), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 138/206 (66%), Positives = 174/206 (84%), Gaps = 5/206 (2%)

Query: 1   MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTG 60
           ME C     K+QP WLL LF +GS+S+ +  F +L   Y+ FLRP+KNLR+YGSWA++TG
Sbjct: 1   MEIC--TYFKSQPTWLLILFVLGSISIFKFIFTLLRSFYIYFLRPSKNLRRYGSWAIITG 58

Query: 61  PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEG 120
           PTDGIGK+FAFQLA+ GLNL+LV RNPDKLKDVSDSI++KY++TQI +VV+DFSGD+DEG
Sbjct: 59  PTDGIGKAFAFQLAQKGLNLILVARNPDKLKDVSDSIRSKYSQTQILTVVMDFSGDIDEG 118

Query: 121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGM 180
           V+RIKE+IEGLDVG+LINN G+SYPYA++FHEVD+ L+ NLIK+NVEGTTKVTQAVLP M
Sbjct: 119 VKRIKESIEGLDVGILINNAGMSYPYAKYFHEVDEELINNLIKINVEGTTKVTQAVLPNM 178

Query: 181 LKRKKGLSMLNIGK--AELMCSVRFH 204
           LKRKKG +++N+G   A L+ S  F+
Sbjct: 179 LKRKKG-AIINMGSGAAALIPSYPFY 203

Beta-ketoacyl-coenzyme A reductase required for the elongation of fatty acids precursors of sphingolipids, triacylglycerols, cuticular waxes and suberin. Responsible for the first reduction step in very long-chain fatty acids (VLCFAs) synthesis. Decreased expression of KCR1 (RNAi) leads to plants with fused vegetative and reproductive organs, and abnormal trichome, epidermal cell and root morphology. Cannot be complemented by KCR2.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 3EC: 0

>sp|Q9FYL6|KCR2_ARATH Very-long-chain 3-oxoacyl-CoA reductase-like protein At1g24470 OS=Arabidopsis thaliana GN=KCR2 PE=2 SV=1

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/184 (48%), Positives = 130/184 (70%), Gaps = 4/184 (2%)

Query: 10  KTQPLWLLALFTIGSLSVLRLAFV-ILNWVYVNFLRPAKNLRKYGSWALVTGPTDGIGKS 68
           ++QP +L  +  IG L +LR+ F+ +L W    FL   K L++YGSWA+VTG T+GIG++
Sbjct: 8   ESQPWYLHFVCFIGFLFLLRVLFIPLLKWFTTRFLLTPKRLKRYGSWAMVTGATEGIGRA 67

Query: 69  FAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI 128
           FA +LAK GLNL+LV RN  KL+ VSD  Q ++   +IK +  DFS +   G   I+E I
Sbjct: 68  FAHELAKHGLNLILVSRNLSKLESVSDDFQQEFPHIKIKIIPFDFSSEGGYGA--IEEGI 125

Query: 129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLS 188
           +GL+VG+LINNVGI+YP A FFHEVDQ+    +++VN+E TT VT++++  ML R++G +
Sbjct: 126 KGLEVGILINNVGITYPRAMFFHEVDQLTWTKILRVNLEATTWVTRSLIGPMLHRRRG-A 184

Query: 189 MLNI 192
           ++NI
Sbjct: 185 IVNI 188

Probable reductase, but unlike KCR1, has no beta-ketoacyl-coenzyme A reductase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A8N6B4|MKAR_COPC7 Very-long-chain 3-oxoacyl-CoA reductase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=CC1G_02019 PE=3 SV=1

 Score =  151 bits (381), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 77/189 (40%), Positives = 118/189 (62%), Gaps = 6/189 (3%)

Query: 9   LKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGS----WALVTGPTDG 64
           ++ QP W   L  +GS + LR+ +  L+ V   F+ P  +L+++G+    WA+VTG TDG
Sbjct: 15  IREQPCWTTFLLALGSFNALRIIYQTLSVVLQTFVLPGTSLKRFGAKKGAWAVVTGATDG 74

Query: 65  IGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERI 124
           IGK FA QL K G N++LV RNP  L   +  I+ KY K Q  +  +DF+   +E    +
Sbjct: 75  IGKEFAMQLGKAGFNVLLVARNPATLAATAGEIEQKY-KVQTGTFSIDFAAATEEKYTAL 133

Query: 125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK 184
            E + GLDVGVL+NNVG S+    +  +  +  +++++++NV  T +VT A+LPGM+K K
Sbjct: 134 GEVLTGLDVGVLVNNVGKSHNMPAYLVDTPRDEMRDIVEINVNATLRVTYAILPGMVKNK 193

Query: 185 KGLSMLNIG 193
           +GL +LNIG
Sbjct: 194 RGL-ILNIG 201

Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3-ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids.

Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (taxid: 240176)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q2UET3|MKAR_ASPOR Very-long-chain 3-oxoacyl-CoA reductase OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=AO090026000492 PE=3 SV=1

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/199 (39%), Positives = 116/199 (58%), Gaps = 9/199 (4%)

Query: 3   SCFLN-TLKTQPLWLLA----LFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYG---S 54
           +C  N  L   P W       L   GSL V   A   +  +   F+ P K+LR +G   S
Sbjct: 9   TCLSNLELNLAPGWQTVSAYFLLAAGSLFVASRALTFVRVLLSLFVLPGKSLRSFGPKGS 68

Query: 55  WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           WA+VTG +DG+GK F+ QLA+ G N+VLV R   KL  +SD I +KYA  Q K++ +DF+
Sbjct: 69  WAVVTGASDGLGKEFSLQLARAGFNIVLVSRTASKLTTLSDEITSKYASVQTKTLAMDFA 128

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
            + D   E++K  ++ LDV +L+NNVG S+     F    Q  + ++I +N  GT + TQ
Sbjct: 129 RNEDSDYEKLKALVDELDVAILVNNVGKSHDIPTPFALTSQEEMTDIITINCMGTLRATQ 188

Query: 175 AVLPGMLKRKKGLSMLNIG 193
            ++PGM++RK+GL +L +G
Sbjct: 189 LIVPGMMQRKRGL-ILTMG 206

Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3-ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5B0R9|MKAR_EMENI Very-long-chain 3-oxoacyl-CoA reductase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN5861 PE=3 SV=1

 Score =  138 bits (347), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/155 (45%), Positives = 102/155 (65%), Gaps = 4/155 (2%)

Query: 42  FLRPAKNLRKYG---SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQ 98
           F+ P K+LR +G   SWA+VTG +DG+GK FA Q+A+ G N+VLV R   KL  ++D I 
Sbjct: 53  FVLPGKSLRSFGPKGSWAIVTGASDGLGKEFALQIARAGYNIVLVSRTASKLTALTDEIT 112

Query: 99  AKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLL 158
           +KY   Q K + +DF+ +LDE  E++K  I+ LDV +LINNVG S+     F    +  L
Sbjct: 113 SKYPSVQTKMLAMDFARNLDEDYEKLKALIQDLDVAILINNVGKSHSIPVPFALTPEDEL 172

Query: 159 KNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
            ++I +N  GT +VTQ V+PGM +RK+GL +L +G
Sbjct: 173 ADIITINCMGTLRVTQLVVPGMTQRKRGL-ILTMG 206

Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3-ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A2QCH3|MKAR_ASPNC Very-long-chain 3-oxoacyl-CoA reductase OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=An02g03570 PE=3 SV=1

 Score =  137 bits (344), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 76/192 (39%), Positives = 112/192 (58%), Gaps = 8/192 (4%)

Query: 4   CFLN-TLKTQPLWLL----ALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYG---SW 55
           C  N  L  QP W      AL   GSL V+  A V +  +   F+ P K LR +G   SW
Sbjct: 10  CLSNWQLNLQPGWQTVGASALLAAGSLFVVSRALVFVRVLLSLFVLPGKPLRSFGPKGSW 69

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A+VTG +DG+GK FA QLA+   N++LV R   KL  +S+ I  K+   Q K++ +DF+ 
Sbjct: 70  AVVTGASDGLGKEFALQLARADFNILLVSRTASKLDTLSNEITTKFPSVQTKTLAMDFAR 129

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           + D   E++KE ++ LDV VL+NNVG S+     F    +  + +++ +N  GT + TQ 
Sbjct: 130 NQDSDYEKLKELVDELDVSVLVNNVGKSHSIPTPFALTPEDEMTDIVTINCLGTLRATQL 189

Query: 176 VLPGMLKRKKGL 187
           V+PGM++RK+GL
Sbjct: 190 VVPGMMQRKRGL 201

Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3-ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids.

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6P7R8|DHB12_RAT Estradiol 17-beta-dehydrogenase 12 OS=Rattus norvegicus GN=Hsd17b12 PE=2 SV=1

 Score =  136 bits (343), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 73/153 (47%), Positives = 108/153 (70%), Gaps = 6/153 (3%)

Query: 51  KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVV 110
           + G WA+VTG TDGIGKS+A +LAK G+ +VL+ R+ DKLK+VS++I+ K+   + +++ 
Sbjct: 48  RLGEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLKEVSNNIKEKF-NVETRTIA 106

Query: 111 VDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQV--LLKNLIKVNVEG 168
           VDFS  LD+  ++IK  + GL++GVL+NNVG+SY Y  +F E+  +   +K LI +NV  
Sbjct: 107 VDFS--LDDIYDKIKTGLSGLEIGVLVNNVGMSYEYPEYFLEIPDLDNTIKKLININVLS 164

Query: 169 TTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV 201
             KVT+ VLPGM++R KG+ +LNI  A  M  V
Sbjct: 165 ICKVTRLVLPGMVERSKGV-ILNISSASGMLPV 196

Catalyzes the transformation of estrone (E1) into estradiol (E2), suggesting a central role in estrogen formation. Its strong expression in ovary and mammary gland suggest that it may constitute the major enzyme responsible for the conversion of E1 to E2 in females. Also has 3-ketoacyl-CoA reductase activity, reducing both long chain 3-ketoacyl-CoAs and long chain fatty acyl-CoAs, suggesting a role in long fatty acid elongation.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q1DNC5|MKAR_COCIM Very-long-chain 3-oxoacyl-CoA reductase OS=Coccidioides immitis (strain RS) GN=CIMG_08188 PE=3 SV=2

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 107/172 (62%), Gaps = 3/172 (1%)

Query: 19  LFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYG---SWALVTGPTDGIGKSFAFQLAK 75
           +F  G L +L      L  ++  F+ P K+L  +G   SWALVTG +DGIGK +A Q+A+
Sbjct: 33  VFATGGLFLLSRGLSFLRALFSIFILPGKSLSSFGPKGSWALVTGASDGIGKEYALQIAR 92

Query: 76  TGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGV 135
            G N++LV R+  KL  V+  I +       K+V +DFS + DE  E++K+ I+ LD+ +
Sbjct: 93  KGYNIILVSRSASKLSAVASEITSANPNILTKTVSMDFSENNDEDYEKLKDIIKDLDISI 152

Query: 136 LINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGL 187
           LINNVG+S+     F +  +  +K++I +N  GT +VTQ V PGM++RK+GL
Sbjct: 153 LINNVGLSHSIPVPFVQTPEKEMKDIIAINCLGTLRVTQLVAPGMMQRKRGL 204

Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3-ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids.

Coccidioides immitis (strain RS) (taxid: 246410)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B2B3L4|MKAR_PODAN Very-long-chain 3-oxoacyl-CoA reductase OS=Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) GN=Pa_6_6580 PE=3 SV=2

 Score =  134 bits (338), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 113/185 (61%), Gaps = 5/185 (2%)

Query: 12  QPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYG---SWALVTGPTDGIGKS 68
           QPL       +G+L VLR A   +  +  +F+    NLRKYG   +WA+VTG +DG+GK 
Sbjct: 21  QPL-QYTFAALGALYVLRGALSFVRLLLNSFILSGPNLRKYGKKGTWAVVTGASDGLGKE 79

Query: 69  FAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI 128
           FA QLA  G NLVLV R   KL  ++  ++ K++  + K + +DFS D DE  ER+ + I
Sbjct: 80  FASQLASKGFNLVLVSRTQSKLDALAKELRLKWSGLETKVLAMDFSQDNDEDYERLAKLI 139

Query: 129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLS 188
            GLDVG+LINNVG S+     F + ++  L++++ +N  GT K T+ V P +  RKKGL 
Sbjct: 140 AGLDVGILINNVGQSHSIPVSFLDTEKTELQSIVTINCLGTLKTTKVVAPILAARKKGL- 198

Query: 189 MLNIG 193
           +L +G
Sbjct: 199 ILTMG 203

Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3-ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids.

Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (taxid: 515849)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A6SG70|MKAR_BOTFB Very-long-chain 3-oxoacyl-CoA reductase OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_11561 PE=3 SV=1

 Score =  134 bits (336), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 101/151 (66%), Gaps = 5/151 (3%)

Query: 42  FLRPAKNLRKYG---SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQ 98
           F+   KNLR YG   +WA+VTG +DG+GK +A QLA+ G N+VLV R   KL+ ++  IQ
Sbjct: 38  FVLSGKNLRTYGKKGTWAVVTGASDGLGKEYAIQLAQKGFNIVLVSRTESKLQTLASEIQ 97

Query: 99  AKYAKT--QIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQV 156
            KYA +  Q K + +DF+ + DE   ++K  ++GLDVG+L+NNVG S+     F +  + 
Sbjct: 98  TKYAGSNIQTKILAMDFAANRDEDYAKLKALVDGLDVGILVNNVGQSHSIPVPFIQTPKE 157

Query: 157 LLKNLIKVNVEGTTKVTQAVLPGMLKRKKGL 187
            ++++I +N  GT +VTQ V PGM++RK+GL
Sbjct: 158 EMRDIITINCMGTLRVTQIVAPGMVQRKRGL 188

Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3-ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids.

Botryotinia fuckeliana (strain B05.10) (taxid: 332648)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
62956018	320	3-ketoacyl-CoA reductase 1 [Gossypium hi	0.932	0.6	0.792	1e-85
224107711	320	predicted protein [Populus trichocarpa]	0.932	0.6	0.777	6e-84
225424552	320	PREDICTED: estradiol 17-beta-dehydrogena	0.932	0.6	0.777	2e-81
255547948	320	steroid dehydrogenase, putative [Ricinus	0.932	0.6	0.813	2e-81
357463161	320	Short-chain dehydrogenase/reductase [Med	0.932	0.6	0.751	9e-81
388519619	320	unknown [Medicago truncatula]	0.932	0.6	0.751	1e-80
28565597	319	putative 3-ketoacyl-CoA reductase 1 [Bra	0.975	0.630	0.684	3e-77
18408847	318	beta-ketoacyl reductase 1 [Arabidopsis t	0.975	0.632	0.669	6e-77
359806497	320	uncharacterized protein LOC100817128 [Gl	0.932	0.6	0.766	1e-76
449450411	320	PREDICTED: very-long-chain 3-oxoacyl-CoA	0.941	0.606	0.753	3e-76

>gi|62956018|gb|AAY23354.1| 3-ketoacyl-CoA reductase 1 [Gossypium hirsutum]

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 153/193 (79%), Positives = 176/193 (91%), Gaps = 1/193 (0%)

Query: 1   MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTG 60
           ME+CF +TLK QP W++ LFT+GSLS+L+ +FV L WV++NFLRP KNL+KYGSW LVTG
Sbjct: 1   MEACFFDTLKAQPFWVIFLFTLGSLSLLKFSFVFLKWVWINFLRPGKNLKKYGSWGLVTG 60

Query: 61  PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEG 120
           PTDGIGK FAFQLA+ GLNLVLVGRNPDKLKDVSDSI AKYAK QI++VVVDF+GDLDEG
Sbjct: 61  PTDGIGKGFAFQLARKGLNLVLVGRNPDKLKDVSDSILAKYAKIQIRTVVVDFTGDLDEG 120

Query: 121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGM 180
           V++IKE IEGLDVGVLINNVGISYPYAR+FHEVD+ LL NLIKVNVEGTTKVTQAVLPGM
Sbjct: 121 VKKIKETIEGLDVGVLINNVGISYPYARYFHEVDEELLVNLIKVNVEGTTKVTQAVLPGM 180

Query: 181 LKRKKGLSMLNIG 193
           +KRKKG +++NIG
Sbjct: 181 VKRKKG-AIVNIG 192

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107711|ref|XP_002314573.1| predicted protein [Populus trichocarpa] gi|222863613|gb|EEF00744.1| predicted protein [Populus trichocarpa]

 Score =  315 bits (808), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 150/193 (77%), Positives = 174/193 (90%), Gaps = 1/193 (0%)

Query: 1   MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTG 60
           M  CF++ LK+QP WLL LFT+GSLS L+  F  L WVYV+FLRPAKNL+KYGSWALVTG
Sbjct: 1   MSLCFVDELKSQPSWLLVLFTLGSLSFLKFLFASLKWVYVSFLRPAKNLKKYGSWALVTG 60

Query: 61  PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEG 120
           PTDGIGK FAFQLA+ GLNL+LVGRNPDKLKDVS SIQ+KY+  QIK+VVVDFSGD+DEG
Sbjct: 61  PTDGIGKGFAFQLARKGLNLILVGRNPDKLKDVSTSIQSKYSNVQIKNVVVDFSGDIDEG 120

Query: 121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGM 180
           V++IKE +EGLDVG+LINNVG+SYPYARFFHEVD+ LLK+LI+VNVEGTTKVTQAVLPGM
Sbjct: 121 VQKIKETVEGLDVGILINNVGVSYPYARFFHEVDEELLKHLIRVNVEGTTKVTQAVLPGM 180

Query: 181 LKRKKGLSMLNIG 193
           LKRKKG +++NIG
Sbjct: 181 LKRKKG-AIVNIG 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424552|ref|XP_002285316.1| PREDICTED: estradiol 17-beta-dehydrogenase 12 [Vitis vinifera]

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 150/193 (77%), Positives = 170/193 (88%), Gaps = 1/193 (0%)

Query: 1   MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTG 60
           ME CF+  L+TQPLW++ LF +G LSVL+    ILN VYV FLRP KNL+KYGSWALVT 
Sbjct: 1   MELCFMEKLQTQPLWVIVLFAVGCLSVLKSFLAILNGVYVCFLRPGKNLKKYGSWALVTA 60

Query: 61  PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEG 120
           PTDGIGK FAF+LA+ GLNLVLVGRNPDKLKDVSD+IQ+KY KTQIK+VVVDF+GD+ EG
Sbjct: 61  PTDGIGKGFAFELARKGLNLVLVGRNPDKLKDVSDAIQSKYGKTQIKAVVVDFAGDISEG 120

Query: 121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGM 180
           V +I+EAI GLDVGVLINNVG+SYPYARFFHEVD  LLKNLIKVNVEGTTKVTQAVLPGM
Sbjct: 121 VLKIREAILGLDVGVLINNVGVSYPYARFFHEVDDELLKNLIKVNVEGTTKVTQAVLPGM 180

Query: 181 LKRKKGLSMLNIG 193
           LKRKKG +++NIG
Sbjct: 181 LKRKKG-AIVNIG 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547948|ref|XP_002515031.1| steroid dehydrogenase, putative [Ricinus communis] gi|223546082|gb|EEF47585.1| steroid dehydrogenase, putative [Ricinus communis]

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 157/193 (81%), Positives = 176/193 (91%), Gaps = 1/193 (0%)

Query: 1   MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTG 60
           ME CF++ LK+QPLW L LF++GSLS+LR  F ILNWVYVNFLRPAKNL+KYGSWALVTG
Sbjct: 1   MELCFVDKLKSQPLWFLVLFSLGSLSLLRCFFTILNWVYVNFLRPAKNLKKYGSWALVTG 60

Query: 61  PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEG 120
           PTDGIGK FAFQLA+ GLNLVLV RNPDKLKDVSDSI +KY K QIK+VVVDFSGD+DEG
Sbjct: 61  PTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSILSKYGKVQIKTVVVDFSGDIDEG 120

Query: 121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGM 180
           V+RIK+ +EGLDVGVLINNVG+SYPYARFFHEVD+ LLKNLIKVNVEGTTKVT AVLPGM
Sbjct: 121 VKRIKDTVEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTHAVLPGM 180

Query: 181 LKRKKGLSMLNIG 193
           LKRKKG +++NIG
Sbjct: 181 LKRKKG-AIINIG 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463161|ref|XP_003601862.1| Short-chain dehydrogenase/reductase [Medicago truncatula] gi|355490910|gb|AES72113.1| Short-chain dehydrogenase/reductase [Medicago truncatula]

 Score =  305 bits (780), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 145/193 (75%), Positives = 171/193 (88%), Gaps = 1/193 (0%)

Query: 1   MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTG 60
           M+ C ++ LKTQP W L LF++G  ++LR   ++LNW YVNFLR  KNL+ YGSWALVTG
Sbjct: 1   MDCCIISKLKTQPFWFLILFSLGLFTILRFTLLLLNWFYVNFLRQPKNLKNYGSWALVTG 60

Query: 61  PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEG 120
           PTDGIGKSFAF+LA+ GLNL+LVGRNP+KLKDVSDSI+AK+ KT++K+VVVDF+GDLD+G
Sbjct: 61  PTDGIGKSFAFELARKGLNLILVGRNPEKLKDVSDSIKAKFGKTEVKTVVVDFTGDLDDG 120

Query: 121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGM 180
           V+RI E I+GLDVGVLINNVGISYPYARFFHEVDQ LLKNLIKVNV GTTKVTQAVLPGM
Sbjct: 121 VKRIVETIDGLDVGVLINNVGISYPYARFFHEVDQELLKNLIKVNVVGTTKVTQAVLPGM 180

Query: 181 LKRKKGLSMLNIG 193
           LKRKKG +++NIG
Sbjct: 181 LKRKKG-AIVNIG 192

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519619|gb|AFK47871.1| unknown [Medicago truncatula]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 145/193 (75%), Positives = 171/193 (88%), Gaps = 1/193 (0%)

Query: 1   MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTG 60
           M+ C ++ LKTQP W L LF++G  ++LR   ++LNW YVNFLR  KNL+ YGSWALVTG
Sbjct: 1   MDCCIISKLKTQPYWFLILFSLGLFTILRFTLLLLNWFYVNFLRQPKNLKNYGSWALVTG 60

Query: 61  PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEG 120
           PTDGIGKSFAF+LA+ GLNL+LVGRNP+KLKDVSDSI+AK+ KT++K+VVVDF+GDLD+G
Sbjct: 61  PTDGIGKSFAFELARKGLNLILVGRNPEKLKDVSDSIKAKFGKTEVKTVVVDFTGDLDDG 120

Query: 121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGM 180
           V+RI E I+GLDVGVLINNVGISYPYARFFHEVDQ LLKNLIKVNV GTTKVTQAVLPGM
Sbjct: 121 VKRIVETIDGLDVGVLINNVGISYPYARFFHEVDQELLKNLIKVNVVGTTKVTQAVLPGM 180

Query: 181 LKRKKGLSMLNIG 193
           LKRKKG +++NIG
Sbjct: 181 LKRKKG-AIVNIG 192

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28565597|gb|AAO43448.1| putative 3-ketoacyl-CoA reductase 1 [Brassica napus]

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 141/206 (68%), Positives = 173/206 (83%), Gaps = 5/206 (2%)

Query: 1   MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTG 60
           ME C     K+QP WLL LF++GS+S+LR  F +L  +Y+ FLRP KNLR+YGSWA++TG
Sbjct: 1   MEIC--TYFKSQPTWLLVLFSLGSISILRFTFTLLTSLYIYFLRPGKNLRRYGSWAIITG 58

Query: 61  PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEG 120
           PTDGIGK+FAFQLA+ GLNLVLV RNPDKLKDVSDSIQAKY+ TQIK+VV+DFSGD+D G
Sbjct: 59  PTDGIGKAFAFQLAQKGLNLVLVARNPDKLKDVSDSIQAKYSNTQIKTVVMDFSGDIDGG 118

Query: 121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGM 180
           V RIKEAIEGL+VG+LINN G+SYPYA++FHEVD+ +L NLIK+NVEGTTKVTQAVL  M
Sbjct: 119 VRRIKEAIEGLEVGILINNAGVSYPYAKYFHEVDEEMLGNLIKINVEGTTKVTQAVLVNM 178

Query: 181 LKRKKGLSMLNIGK--AELMCSVRFH 204
           LKRK+G +++N+G   A L+ S  F+
Sbjct: 179 LKRKRG-AIVNMGSGAAALIPSYPFY 203

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18408847|ref|NP_564905.1| beta-ketoacyl reductase 1 [Arabidopsis thaliana] gi|75301204|sp|Q8L9C4.1|KCR1_ARATH RecName: Full=Very-long-chain 3-oxoacyl-CoA reductase 1; AltName: Full=Beta-ketoacyl reductase 1; Short=AtKCR1; AltName: Full=Protein GLOSSY 8; Short=gl8At gi|21594872|gb|AAM66051.1| unknown [Arabidopsis thaliana] gi|332196567|gb|AEE34688.1| beta-ketoacyl reductase 1 [Arabidopsis thaliana]

 Score =  292 bits (747), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 138/206 (66%), Positives = 174/206 (84%), Gaps = 5/206 (2%)

Query: 1   MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTG 60
           ME C     K+QP WLL LF +GS+S+ +  F +L   Y+ FLRP+KNLR+YGSWA++TG
Sbjct: 1   MEIC--TYFKSQPTWLLILFVLGSISIFKFIFTLLRSFYIYFLRPSKNLRRYGSWAIITG 58

Query: 61  PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEG 120
           PTDGIGK+FAFQLA+ GLNL+LV RNPDKLKDVSDSI++KY++TQI +VV+DFSGD+DEG
Sbjct: 59  PTDGIGKAFAFQLAQKGLNLILVARNPDKLKDVSDSIRSKYSQTQILTVVMDFSGDIDEG 118

Query: 121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGM 180
           V+RIKE+IEGLDVG+LINN G+SYPYA++FHEVD+ L+ NLIK+NVEGTTKVTQAVLP M
Sbjct: 119 VKRIKESIEGLDVGILINNAGMSYPYAKYFHEVDEELINNLIKINVEGTTKVTQAVLPNM 178

Query: 181 LKRKKGLSMLNIGK--AELMCSVRFH 204
           LKRKKG +++N+G   A L+ S  F+
Sbjct: 179 LKRKKG-AIINMGSGAAALIPSYPFY 203

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806497|ref|NP_001241510.1| uncharacterized protein LOC100817128 [Glycine max] gi|255647230|gb|ACU24083.1| unknown [Glycine max]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 148/193 (76%), Positives = 173/193 (89%), Gaps = 1/193 (0%)

Query: 1   MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTG 60
           ME C +  LKTQPLW   LF +G L++L+LAFV+  WVYVNFLRP KNL+KYGSWA+VTG
Sbjct: 1   MECCIIARLKTQPLWFALLFVVGLLTILKLAFVVFRWVYVNFLRPPKNLKKYGSWAVVTG 60

Query: 61  PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEG 120
           PTDGIGKSFAF+LA+ GLNLVLVGRNPDKLKDVSDSI AK+ +T++K+VVVDFSGDLDEG
Sbjct: 61  PTDGIGKSFAFELARKGLNLVLVGRNPDKLKDVSDSIAAKFRRTEVKTVVVDFSGDLDEG 120

Query: 121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGM 180
           V++I EAIEGL+VGVL+NNVG+SYPYARFFHEVD+ LL NLIKVNV GTTKVTQAVLPGM
Sbjct: 121 VKKISEAIEGLEVGVLVNNVGVSYPYARFFHEVDEGLLNNLIKVNVVGTTKVTQAVLPGM 180

Query: 181 LKRKKGLSMLNIG 193
           L+RKKG +++NIG
Sbjct: 181 LRRKKG-AIVNIG 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450411|ref|XP_004142956.1| PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Cucumis sativus] gi|449527051|ref|XP_004170526.1| PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Cucumis sativus]

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 147/195 (75%), Positives = 168/195 (86%), Gaps = 1/195 (0%)

Query: 1   MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTG 60
           M+   +  LK+QP+W+  L  +GSLS L+   +ILNW+YVNFLRP+KNL+KYGSWALVTG
Sbjct: 1   MQLSCVEHLKSQPIWVFFLLALGSLSALKFILIILNWIYVNFLRPSKNLKKYGSWALVTG 60

Query: 61  PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEG 120
           PTDGIGKSFAFQLA+ GLNLVLVGRNP+KLKDVSDSI AKY   QIKSVVVDFSGDL EG
Sbjct: 61  PTDGIGKSFAFQLARKGLNLVLVGRNPEKLKDVSDSIVAKYGSIQIKSVVVDFSGDLSEG 120

Query: 121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGM 180
           ++RI EAIEGLDVGVLINNVG+SYPY RFFHEVD+ LL NLIKVNVEGTTKVT AVLPGM
Sbjct: 121 IKRITEAIEGLDVGVLINNVGVSYPYGRFFHEVDEELLNNLIKVNVEGTTKVTHAVLPGM 180

Query: 181 LKRKKGLSMLNIGKA 195
           LKRK+G +++NIG  
Sbjct: 181 LKRKRG-AIVNIGSG 194

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2008630	318	KCR1 "beta-ketoacyl reductase	0.975	0.632	0.669	6.7e-72
TAIR|locus:2023996	312	KCR2 "beta-ketoacyl reductase	0.873	0.576	0.483	5.9e-41
RGD|708367	312	Hsd17b12 "hydroxysteroid (17-b	0.839	0.554	0.442	6.7e-33
UNIPROTKB|Q6P7R8	312	Hsd17b12 "Estradiol 17-beta-de	0.839	0.554	0.442	6.7e-33
MGI|MGI:1926967	312	Hsd17b12 "hydroxysteroid (17-b	0.713	0.471	0.464	1.3e-31
ASPGD|ASPL0000007762	346	AN5861 [Emericella nidulans (t	0.844	0.502	0.421	2.6e-31
UNIPROTKB|A6H7H3	312	LOC789567 "LOC789567 protein"	0.907	0.599	0.419	3.3e-31
DICTYBASE|DDB_G0275049	307	DDB_G0275049 "short-chain dehy	0.825	0.553	0.389	1.8e-30
FB|FBgn0029975	321	CG1444 [Drosophila melanogaste	0.864	0.554	0.389	2.3e-30
UNIPROTKB|Q5E9H7	312	HSD17B12 "Estradiol 17-beta-de	0.868	0.573	0.410	2.3e-30

TAIR|locus:2008630 KCR1 "beta-ketoacyl reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 138/206 (66%), Positives = 174/206 (84%)

Query:     1 MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTG 60
             ME C     K+QP WLL LF +GS+S+ +  F +L   Y+ FLRP+KNLR+YGSWA++TG
Sbjct:     1 MEIC--TYFKSQPTWLLILFVLGSISIFKFIFTLLRSFYIYFLRPSKNLRRYGSWAIITG 58

Query:    61 PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEG 120
             PTDGIGK+FAFQLA+ GLNL+LV RNPDKLKDVSDSI++KY++TQI +VV+DFSGD+DEG
Sbjct:    59 PTDGIGKAFAFQLAQKGLNLILVARNPDKLKDVSDSIRSKYSQTQILTVVMDFSGDIDEG 118

Query:   121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGM 180
             V+RIKE+IEGLDVG+LINN G+SYPYA++FHEVD+ L+ NLIK+NVEGTTKVTQAVLP M
Sbjct:   119 VKRIKESIEGLDVGILINNAGMSYPYAKYFHEVDEELINNLIKINVEGTTKVTQAVLPNM 178

Query:   181 LKRKKGLSMLNIGK--AELMCSVRFH 204
             LKRKKG +++N+G   A L+ S  F+
Sbjct:   179 LKRKKG-AIINMGSGAAALIPSYPFY 203

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0045703 "ketoreductase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0018454 "acetoacetyl-CoA reductase activity" evidence=IMP

GO:0042761 "very long-chain fatty acid biosynthetic process" evidence=IMP

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

GO:0042335 "cuticle development" evidence=ISS

TAIR|locus:2023996 KCR2 "beta-ketoacyl reductase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 89/184 (48%), Positives = 130/184 (70%)

Query:    10 KTQPLWLLALFTIGSLSVLRLAFV-ILNWVYVNFLRPAKNLRKYGSWALVTGPTDGIGKS 68
             ++QP +L  +  IG L +LR+ F+ +L W    FL   K L++YGSWA+VTG T+GIG++
Sbjct:     8 ESQPWYLHFVCFIGFLFLLRVLFIPLLKWFTTRFLLTPKRLKRYGSWAMVTGATEGIGRA 67

Query:    69 FAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI 128
             FA +LAK GLNL+LV RN  KL+ VSD  Q ++   +IK +  DFS +   G   I+E I
Sbjct:    68 FAHELAKHGLNLILVSRNLSKLESVSDDFQQEFPHIKIKIIPFDFSSE--GGYGAIEEGI 125

Query:   129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLS 188
             +GL+VG+LINNVGI+YP A FFHEVDQ+    +++VN+E TT VT++++  ML R++G +
Sbjct:   126 KGLEVGILINNVGITYPRAMFFHEVDQLTWTKILRVNLEATTWVTRSLIGPMLHRRRG-A 184

Query:   189 MLNI 192
             ++NI
Sbjct:   185 IVNI 188

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0045703 "ketoreductase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0018454 "acetoacetyl-CoA reductase activity" evidence=IMP

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

RGD|708367 Hsd17b12 "hydroxysteroid (17-beta) dehydrogenase 12" [Rattus norvegicus (taxid:10116)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 84/190 (44%), Positives = 124/190 (65%)

Query:    17 LALFTI-GSLSVLRLAFVILNWVYVN--FLRPAKNLRKYGSWALVTGPTDGIGKSFAFQL 73
             +A  T+  S S+ R AF +  W   N  F+ P     + G WA+VTG TDGIGKS+A +L
Sbjct:    19 IAYLTLRASYSLFR-AFQV--WCVGNQAFVGP-----RLGEWAVVTGGTDGIGKSYAEEL 70

Query:    74 AKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV 133
             AK G+ +VL+ R+ DKLK+VS++I+ K+   + +++ VDFS  LD+  ++IK  + GL++
Sbjct:    71 AKRGMKIVLISRSQDKLKEVSNNIKEKF-NVETRTIAVDFS--LDDIYDKIKTGLSGLEI 127

Query:   134 GVLINNVGISYPYARFFHEVDQV--LLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLN 191
             GVL+NNVG+SY Y  +F E+  +   +K LI +NV    KVT+ VLPGM++R KG+ +LN
Sbjct:   128 GVLVNNVGMSYEYPEYFLEIPDLDNTIKKLININVLSICKVTRLVLPGMVERSKGV-ILN 186

Query:   192 IGKAELMCSV 201
             I  A  M  V
Sbjct:   187 ISSASGMLPV 196

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001968 "fibronectin binding" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0004303 "estradiol 17-beta-dehydrogenase activity" evidence=IEA

GO:0005518 "collagen binding" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006703 "estrogen biosynthetic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008201 "heparin binding" evidence=IEA;ISO

GO:0010811 "positive regulation of cell-substrate adhesion" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA;ISO

GO:0031012 "extracellular matrix" evidence=IEA;ISO

UNIPROTKB|Q6P7R8 Hsd17b12 "Estradiol 17-beta-dehydrogenase 12" [Rattus norvegicus (taxid:10116)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 84/190 (44%), Positives = 124/190 (65%)

Query:    17 LALFTI-GSLSVLRLAFVILNWVYVN--FLRPAKNLRKYGSWALVTGPTDGIGKSFAFQL 73
             +A  T+  S S+ R AF +  W   N  F+ P     + G WA+VTG TDGIGKS+A +L
Sbjct:    19 IAYLTLRASYSLFR-AFQV--WCVGNQAFVGP-----RLGEWAVVTGGTDGIGKSYAEEL 70

Query:    74 AKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV 133
             AK G+ +VL+ R+ DKLK+VS++I+ K+   + +++ VDFS  LD+  ++IK  + GL++
Sbjct:    71 AKRGMKIVLISRSQDKLKEVSNNIKEKF-NVETRTIAVDFS--LDDIYDKIKTGLSGLEI 127

Query:   134 GVLINNVGISYPYARFFHEVDQV--LLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLN 191
             GVL+NNVG+SY Y  +F E+  +   +K LI +NV    KVT+ VLPGM++R KG+ +LN
Sbjct:   128 GVLVNNVGMSYEYPEYFLEIPDLDNTIKKLININVLSICKVTRLVLPGMVERSKGV-ILN 186

Query:   192 IGKAELMCSV 201
             I  A  M  V
Sbjct:   187 ISSASGMLPV 196

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1926967 Hsd17b12 "hydroxysteroid (17-beta) dehydrogenase 12" [Mus musculus (taxid:10090)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 71/153 (46%), Positives = 106/153 (69%)

Query:    51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVV 110
             + G WA+VTG TDGIGK++A +LAK G+ +VL+ R+ DKL  VS++I+ K+   + +++ 
Sbjct:    48 RLGEWAVVTGGTDGIGKAYAEELAKRGMKIVLISRSQDKLNQVSNNIKEKF-NVETRTIA 106

Query:   111 VDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQV--LLKNLIKVNVEG 168
             VDFS  LD+  ++IK  + GL++GVL+NNVG+SY Y  +F E+  +   +K LI +NV  
Sbjct:   107 VDFS--LDDIYDKIKTGLSGLEIGVLVNNVGMSYEYPEYFLEIPDLDNTIKKLININVLS 164

Query:   169 TTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV 201
               KVT+ VLPGM++R KG+ +LNI  A  M  V
Sbjct:   165 VCKVTRLVLPGMVERSKGV-ILNISSASGMLPV 196

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001968 "fibronectin binding" evidence=IDA

GO:0004303 "estradiol 17-beta-dehydrogenase activity" evidence=IEA

GO:0005518 "collagen binding" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008201 "heparin binding" evidence=IDA

GO:0010811 "positive regulation of cell-substrate adhesion" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IDA

GO:0031012 "extracellular matrix" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

ASPGD|ASPL0000007762 AN5861 [Emericella nidulans (taxid:162425)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 75/178 (42%), Positives = 109/178 (61%)

Query:    19 LFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYG---SWALVTGPTDGIGKSFAFQLAK 75
             L   G   V+   +  L  +   F+ P K+LR +G   SWA+VTG +DG+GK FA Q+A+
Sbjct:    30 LLVAGGWFVVSRVWTFLRVLTSLFVLPGKSLRSFGPKGSWAIVTGASDGLGKEFALQIAR 89

Query:    76 TGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGV 135
              G N+VLV R   KL  ++D I +KY   Q K + +DF+ +LDE  E++K  I+ LDV +
Sbjct:    90 AGYNIVLVSRTASKLTALTDEITSKYPSVQTKMLAMDFARNLDEDYEKLKALIQDLDVAI 149

Query:   136 LINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
             LINNVG S+     F    +  L ++I +N  GT +VTQ V+PGM +RK+GL +L +G
Sbjct:   150 LINNVGKSHSIPVPFALTPEDELADIITINCMGTLRVTQLVVPGMTQRKRGL-ILTMG 206

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0045703 "ketoreductase activity" evidence=IEA

GO:0030497 "fatty acid elongation" evidence=IEA

UNIPROTKB|A6H7H3 LOC789567 "LOC789567 protein" [Bos taurus (taxid:9913)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 83/198 (41%), Positives = 127/198 (64%)

Query:     1 MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLR-KYGSWALVT 59
             MES FL    T  L+ + + T+  L+ LR++  +   V V  L     +  + G WA+VT
Sbjct:     1 MES-FLPA--TGFLYWVGVGTVAYLA-LRISCFLFTAVRVWGLGNESGVGPRLGEWAVVT 56

Query:    60 GPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDE 119
             G TDGIGKS+A +LA+ G+ +VL+ R+ DKL  VS  I+ K+ K + K++ VDF+  L++
Sbjct:    57 GSTDGIGKSYAEKLAERGMKIVLISRSQDKLNQVSSEIREKF-KVETKTIAVDFT--LED 113

Query:   120 GVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQV--LLKNLIKVNVEGTTKVTQAVL 177
               ++IK ++ GL++GVL+NNVG+SY Y  +F ++  +   +K LI VNV    K+TQ VL
Sbjct:   114 IYDKIKTSLAGLEIGVLVNNVGMSYEYPEYFLDIPDLDNTIKKLISVNVLSVCKMTQLVL 173

Query:   178 PGMLKRKKGLSMLNIGKA 195
             PGM++R KG+ +LNI  A
Sbjct:   174 PGMVERSKGV-ILNISSA 190

GO:0031012 "extracellular matrix" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0010811 "positive regulation of cell-substrate adhesion" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0005518 "collagen binding" evidence=IEA

GO:0001968 "fibronectin binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

DICTYBASE|DDB_G0275049 DDB_G0275049 "short-chain dehydrogenase/reductase (SDR) family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 67/172 (38%), Positives = 112/172 (65%)

Query:    21 TIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNL 80
             +IG   +LR A   + ++Y  F+R   N+ KYGSW +VTG TDGIGK++  + AK  LN+
Sbjct:    13 SIGLGILLRYAARFVLFLYAYFVRSPININKYGSWVVVTGATDGIGKAYCHEFAKKKLNV 72

Query:    81 VLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNV 140
             VLV R+ DKLK+V+  I+ K+ K Q K +  DF+   D   + + + + G+D+GVL+NNV
Sbjct:    73 VLVSRSLDKLKEVASEIENKF-KVQTKVISFDFNTTDDSKYQELFKQLSGIDIGVLVNNV 131

Query:   141 GISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNI 192
             GISY +  +  E+    +++LI +NV   T +++ +L  M+++K+G +++N+
Sbjct:   132 GISYDHPMYLEELQPASIESLINLNVRAATVLSKFILTSMVEKKRG-AIINL 182

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0029975 CG1444 [Drosophila melanogaster (taxid:7227)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 74/190 (38%), Positives = 119/190 (62%)

Query:    11 TQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRP-----AKNLRKYGSWALVTGPTDGI 65
             +Q L LL    IG +   ++   +L W+Y N + P     + +L K G WA+VTG TDGI
Sbjct:     6 SQVLSLLGGLAIGIVG-FQVFRKVLPWIYANVVGPKVFGSSVDLSKMGEWAVVTGSTDGI 64

Query:    66 GKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIK 125
             GK++A +LA+ GL LVL+ R+ +KL  V+  I  KY   +++ + VDF+G  DE  ++I+
Sbjct:    65 GKAYAKELARRGLKLVLISRSLEKLNVVAKEIGDKYG-VEVRVIDVDFTGG-DEIYDKIR 122

Query:   126 EAIEGLDVGVLINNVGISYPYARFF---HEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLK 182
             E   GL+VGVL+NNVGISY +  +F   ++ D   L+N++  N+   T +T   LPGM+ 
Sbjct:   123 EKTTGLNVGVLVNNVGISYGHPEYFLDCYKADPPFLRNIVAANIHSVTHMTALFLPGMIS 182

Query:   183 RKKGLSMLNI 192
             +++G+ ++N+
Sbjct:   183 QRRGV-IINV 191

GO:0016229 "steroid dehydrogenase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q5E9H7 HSD17B12 "Estradiol 17-beta-dehydrogenase 12" [Bos taurus (taxid:9913)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 78/190 (41%), Positives = 117/190 (61%)

Query:    19 LFTIGSLSVLRLAFVILNWVYVNF----LRPAKNLRKY-GSWALVTGPTDGIGKSFAFQL 73
             L+ +G+ +V  LA  I  W +       L     +  + G WA+VTG TDGIGKS+A +L
Sbjct:    11 LYWVGASTVAYLALRISCWFFTALRVWGLGHEAGVGPWLGEWAVVTGGTDGIGKSYAEEL 70

Query:    74 AKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV 133
             AK G+ +VL+ R+ DKL  VS  I  K+ K + K++ VDF+ +  +  ++IK ++ GL++
Sbjct:    71 AKRGMKIVLISRSQDKLDQVSSEISEKF-KVETKTIAVDFTSE--DIYDKIKASLAGLNI 127

Query:   134 GVLINNVGISYPYARFFHEVDQV--LLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLN 191
             GVL+NNVG+SY Y  +F +V  +   +K LI VN     K+T+ VLPGM++R KG ++LN
Sbjct:   128 GVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERSKG-AILN 186

Query:   192 IGKAELMCSV 201
             I  A  M  V
Sbjct:   187 ISSASGMYPV 196

GO:0006703 "estrogen biosynthetic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0004303 "estradiol 17-beta-dehydrogenase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L9C4	KCR1_ARATH	1, ., 1, ., 1, ., 3, 3, 0	0.6699	0.9757	0.6320	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
PLN02780	320	PLN02780, PLN02780, ketoreductase/ oxidoreductase	1e-126
cd05356	239	cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxyst	2e-61
COG0300	265	COG0300, DltE, Short-chain dehydrogenases of vario	1e-26
PRK07666	239	PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein)	1e-24
cd05233	234	cd05233, SDR_c, classical (c) SDRs	7e-23
PRK07454	241	PRK07454, PRK07454, short chain dehydrogenase; Pro	2e-22
cd05332	257	cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxyste	8e-21
cd08939	239	cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine	8e-20
COG4221	246	COG4221, COG4221, Short-chain alcohol dehydrogenas	8e-20
cd05346	249	cd05346, SDR_c5, classical (c) SDR, subgroup 5	4e-19
cd05333	240	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein	8e-19
TIGR01830	239	TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier	8e-19
cd05374	248	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster	1e-17
cd05339	243	cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hy	2e-17
PRK05653	246	PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein)	9e-17
PRK12826	251	PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote	1e-16
PRK05557	248	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein)	8e-16
PRK07201	657	PRK07201, PRK07201, short chain dehydrogenase; Pro	1e-15
PRK13394	262	PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenas	1e-15
PRK09072	263	PRK09072, PRK09072, short chain dehydrogenase; Pro	2e-15
cd08934	243	cd08934, CAD_SDR_c, clavulanic acid dehydrogenase	2e-15
cd05327	269	cd05327, retinol-DH_like_SDR_c_like, retinol dehyd	2e-15
cd05347	248	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogena	3e-15
PRK05565	247	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein)	3e-15
PRK12429	258	PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenas	4e-15
cd05364	253	cd05364, SDR_c11, classical (c) SDR, subgroup 11	6e-15
PRK08945	247	PRK08945, PRK08945, putative oxoacyl-(acyl carrier	1e-14
COG1028	251	COG1028, FabG, Dehydrogenases with different speci	1e-14
PRK07231	251	PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-14
TIGR01963	255	TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase	2e-14
PRK05866	293	PRK05866, PRK05866, short chain dehydrogenase; Pro	2e-14
cd05325	233	cd05325, carb_red_sniffer_like_SDR_c, carbonyl red	2e-14
cd05370	228	cd05370, SDR_c2, classical (c) SDR, subgroup 2	3e-14
PRK12829	264	PRK12829, PRK12829, short chain dehydrogenase; Pro	4e-14
PRK09242	257	PRK09242, PRK09242, tropinone reductase; Provision	1e-13
cd05344	253	cd05344, BKR_like_SDR_like, putative beta-ketoacyl	2e-13
PRK06181	263	PRK06181, PRK06181, short chain dehydrogenase; Pro	4e-13
cd05324	225	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu	6e-13
PRK08085	254	PRK08085, PRK08085, gluconate 5-dehydrogenase; Pro	1e-12
cd05340	236	cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-li	3e-12
PRK07523	255	PRK07523, PRK07523, gluconate 5-dehydrogenase; Pro	3e-12
PRK08226	263	PRK08226, PRK08226, short chain dehydrogenase; Pro	3e-12
cd05323	244	cd05323, ADH_SDR_c_like, insect type alcohol dehyd	3e-12
PRK12825	249	PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein)	6e-12
PRK07097	265	PRK07097, PRK07097, gluconate 5-dehydrogenase; Pro	1e-11
COG3967	245	COG3967, DltE, Short-chain dehydrogenase involved	2e-11
cd05351	244	cd05351, XR_like_SDR_c, xylulose reductase-like, c	2e-11
PRK07063	260	PRK07063, PRK07063, short chain dehydrogenase; Pro	2e-11
cd08940	258	cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydroge	3e-11
cd08930	250	cd08930, SDR_c8, classical (c) SDR, subgroup 8	4e-11
PRK05872	296	PRK05872, PRK05872, short chain dehydrogenase; Pro	4e-11
PRK06914	280	PRK06914, PRK06914, short chain dehydrogenase; Pro	4e-11
cd05354	235	cd05354, SDR_c7, classical (c) SDR, subgroup 7	9e-11
PRK08324	681	PRK08324, PRK08324, short chain dehydrogenase; Val	1e-10
TIGR04316	250	TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxyben	1e-10
cd05353	250	cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-	2e-10
PRK06114	254	PRK06114, PRK06114, short chain dehydrogenase; Pro	2e-10
PRK07814	263	PRK07814, PRK07814, short chain dehydrogenase; Pro	2e-10
PRK08589	272	PRK08589, PRK08589, short chain dehydrogenase; Val	3e-10
TIGR01829	242	TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reducta	3e-10
cd05350	239	cd05350, SDR_c6, classical (c) SDR, subgroup 6	4e-10
cd05368	241	cd05368, DHRS6_like_SDR_c, human DHRS6-like, class	4e-10
cd05369	249	cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reducta	5e-10
TIGR03206	250	TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxy	6e-10
PRK07109	334	PRK07109, PRK07109, short chain dehydrogenase; Pro	6e-10
TIGR02415	254	TIGR02415, 23BDH, acetoin reductases	8e-10
PRK12939	250	PRK12939, PRK12939, short chain dehydrogenase; Pro	8e-10
PRK06484	520	PRK06484, PRK06484, short chain dehydrogenase; Val	1e-09
PRK12824	245	PRK12824, PRK12824, acetoacetyl-CoA reductase; Pro	1e-09
cd05338	246	cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogena	1e-09
cd05373	238	cd05373, SDR_c10, classical (c) SDR, subgroup 10	1e-09
cd05337	255	cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl	2e-09
cd05343	250	cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, c	2e-09
cd08937	256	cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa	2e-09
PRK07577	234	PRK07577, PRK07577, short chain dehydrogenase; Pro	4e-09
cd05367	241	cd05367, SPR-like_SDR_c, sepiapterin reductase (SP	5e-09
PRK06180	277	PRK06180, PRK06180, short chain dehydrogenase; Pro	5e-09
PRK12823	260	PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1	6e-09
PRK07774	250	PRK07774, PRK07774, short chain dehydrogenase; Pro	6e-09
PRK07074	257	PRK07074, PRK07074, short chain dehydrogenase; Pro	7e-09
PRK08264	238	PRK08264, PRK08264, short chain dehydrogenase; Val	9e-09
cd08932	223	cd08932, HetN_like_SDR_c, HetN oxidoreductase-like	9e-09
PRK06949	258	PRK06949, PRK06949, short chain dehydrogenase; Pro	1e-08
PRK10538	248	PRK10538, PRK10538, malonic semialdehyde reductase	1e-08
PRK07067	257	PRK07067, PRK07067, sorbitol dehydrogenase; Provis	2e-08
PRK06179	270	PRK06179, PRK06179, short chain dehydrogenase; Pro	2e-08
PRK07832	272	PRK07832, PRK07832, short chain dehydrogenase; Pro	2e-08
cd09763	265	cd09763, DHRS1-like_SDR_c, human dehydrogenase/red	2e-08
PRK07890	258	PRK07890, PRK07890, short chain dehydrogenase; Pro	2e-08
PRK06841	255	PRK06841, PRK06841, short chain dehydrogenase; Pro	2e-08
cd05352	252	cd05352, MDH-like_SDR_c, mannitol dehydrogenase (M	3e-08
PRK06182	273	PRK06182, PRK06182, short chain dehydrogenase; Val	3e-08
PRK08213	259	PRK08213, PRK08213, gluconate 5-dehydrogenase; Pro	4e-08
PRK06463	255	PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein)	4e-08
PRK09291	257	PRK09291, PRK09291, short chain dehydrogenase; Pro	4e-08
PRK05693	274	PRK05693, PRK05693, short chain dehydrogenase; Pro	5e-08
PRK07775	274	PRK07775, PRK07775, short chain dehydrogenase; Pro	6e-08
PRK06550	235	PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein)	6e-08
PRK06125	259	PRK06125, PRK06125, short chain dehydrogenase; Pro	7e-08
cd05341	247	cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta	7e-08
PRK07326	237	PRK07326, PRK07326, short chain dehydrogenase; Pro	9e-08
PRK08217	253	PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein)	9e-08
PRK08277	278	PRK08277, PRK08277, D-mannonate oxidoreductase; Pr	1e-07
PRK05875	276	PRK05875, PRK05875, short chain dehydrogenase; Pro	2e-07
PRK06398	258	PRK06398, PRK06398, aldose dehydrogenase; Validate	2e-07
cd05349	246	cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl	2e-07
cd08945	258	cd08945, PKR_SDR_c, Polyketide ketoreductase, clas	2e-07
PRK12745	256	PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-prote	2e-07
cd05358	253	cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (Glc	2e-07
PRK07677	252	PRK07677, PRK07677, short chain dehydrogenase; Pro	2e-07
PRK06138	252	PRK06138, PRK06138, short chain dehydrogenase; Pro	3e-07
cd05360	233	cd05360, SDR_c3, classical (c) SDR, subgroup 3	3e-07
PRK08643	256	PRK08643, PRK08643, acetoin reductase; Validated	3e-07
cd05365	242	cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroi	4e-07
cd08935	271	cd08935, mannonate_red_SDR_c, putative D-mannonate	5e-07
PRK06198	260	PRK06198, PRK06198, short chain dehydrogenase; Pro	5e-07
TIGR01832	248	TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogena	5e-07
PRK07825	273	PRK07825, PRK07825, short chain dehydrogenase; Pro	5e-07
PRK08063	250	PRK08063, PRK08063, enoyl-(acyl carrier protein) r	6e-07
TIGR03971	265	TIGR03971, SDR_subfam_1, oxidoreductase, SDR famil	8e-07
cd05362	243	cd05362, THN_reductase-like_SDR_c, tetrahydroxynap	8e-07
cd05345	248	cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl	8e-07
PRK12828	239	PRK12828, PRK12828, short chain dehydrogenase; Pro	1e-06
PRK06171	266	PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydro	1e-06
TIGR01500	256	TIGR01500, sepiapter_red, sepiapterin reductase	1e-06
cd09808	255	cd09808, DHRS-12_like_SDR_c-like, human dehydrogen	1e-06
cd08943	250	cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate al	1e-06
PRK12743	256	PRK12743, PRK12743, oxidoreductase; Provisional	1e-06
pfam00106	167	pfam00106, adh_short, short chain dehydrogenase	1e-06
PRK12935	247	PRK12935, PRK12935, acetoacetyl-CoA reductase; Pro	1e-06
PRK12827	249	PRK12827, PRK12827, short chain dehydrogenase; Pro	2e-06
cd05366	257	cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol	2e-06
PRK08219	227	PRK08219, PRK08219, short chain dehydrogenase; Pro	2e-06
PRK07060	245	PRK07060, PRK07060, short chain dehydrogenase; Pro	2e-06
cd05331	244	cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydroz	2e-06
PRK08263	275	PRK08263, PRK08263, short chain dehydrogenase; Pro	2e-06
cd05330	257	cd05330, cyclohexanol_reductase_SDR_c, cyclohexano	2e-06
PRK07856	252	PRK07856, PRK07856, short chain dehydrogenase; Pro	3e-06
cd08942	250	cd08942, RhlG_SDR_c, RhlG and related beta-ketoacy	3e-06
cd05355	270	cd05355, SDR_c1, classical (c) SDR, subgroup 1	4e-06
cd05329	251	cd05329, TR_SDR_c, tropinone reductase-I and II (T	4e-06
PRK06523	260	PRK06523, PRK06523, short chain dehydrogenase; Pro	4e-06
PRK06701	290	PRK06701, PRK06701, short chain dehydrogenase; Pro	5e-06
PRK05854	313	PRK05854, PRK05854, short chain dehydrogenase; Pro	5e-06
cd08929	226	cd08929, SDR_c4, classical (c) SDR, subgroup 4	5e-06
PRK07035	252	PRK07035, PRK07035, short chain dehydrogenase; Pro	6e-06
PRK06194	287	PRK06194, PRK06194, hypothetical protein; Provisio	6e-06
PRK06484	520	PRK06484, PRK06484, short chain dehydrogenase; Val	1e-05
PRK06197	306	PRK06197, PRK06197, short chain dehydrogenase; Pro	1e-05
cd09806	258	cd09806, type1_17beta-HSD-like_SDR_c, human estrog	1e-05
PRK07478	254	PRK07478, PRK07478, short chain dehydrogenase; Pro	2e-05
PRK08265	261	PRK08265, PRK08265, short chain dehydrogenase; Pro	2e-05
cd05359	242	cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_c	2e-05
PRK12746	254	PRK12746, PRK12746, short chain dehydrogenase; Pro	2e-05
PRK05650	270	PRK05650, PRK05650, short chain dehydrogenase; Pro	2e-05
PRK06935	258	PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrog	2e-05
PRK06500	249	PRK06500, PRK06500, short chain dehydrogenase; Pro	3e-05
cd08936	256	cd08936, CR_SDR_c, Porcine peroxisomal carbonyl re	3e-05
PRK08642	253	PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein)	3e-05
cd01078	194	cd01078, NAD_bind_H4MPT_DH, NADP binding domain of	4e-05
cd05363	254	cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH),	4e-05
PRK06139	330	PRK06139, PRK06139, short chain dehydrogenase; Pro	4e-05
PRK08703	239	PRK08703, PRK08703, short chain dehydrogenase; Pro	4e-05
PRK12936	245	PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-prote	4e-05
PRK07062	265	PRK07062, PRK07062, short chain dehydrogenase; Pro	4e-05
cd08944	246	cd08944, SDR_c12, classical (c) SDR, subgroup 12	5e-05
PRK06128	300	PRK06128, PRK06128, oxidoreductase; Provisional	6e-05
PRK08220	252	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehy	7e-05
PRK12384	259	PRK12384, PRK12384, sorbitol-6-phosphate dehydroge	8e-05
TIGR02632	676	TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate	8e-05
PRK12937	245	PRK12937, PRK12937, short chain dehydrogenase; Pro	9e-05
cd05326	249	cd05326, secoisolariciresinol-DH_like_SDR_c, secoi	1e-04
PRK05867	253	PRK05867, PRK05867, short chain dehydrogenase; Pro	1e-04
cd05371	252	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydr	1e-04
cd09762	243	cd09762, HSDL2_SDR_c, human hydroxysteroid dehydro	1e-04
PRK08339	263	PRK08339, PRK08339, short chain dehydrogenase; Pro	1e-04
PRK06196	315	PRK06196, PRK06196, oxidoreductase; Provisional	1e-04
PRK06172	253	PRK06172, PRK06172, short chain dehydrogenase; Pro	1e-04
PRK06057	255	PRK06057, PRK06057, short chain dehydrogenase; Pro	2e-04
PRK08655	437	PRK08655, PRK08655, prephenate dehydrogenase; Prov	2e-04
PRK06124	256	PRK06124, PRK06124, gluconate 5-dehydrogenase; Pro	2e-04
PRK07069	251	PRK07069, PRK07069, short chain dehydrogenase; Val	2e-04
PRK08278	273	PRK08278, PRK08278, short chain dehydrogenase; Pro	3e-04
PRK12481	251	PRK12481, PRK12481, 2-deoxy-D-gluconate 3-dehydrog	3e-04
cd08931	227	cd08931, SDR_c9, classical (c) SDR, subgroup 9	4e-04
PRK07102	243	PRK07102, PRK07102, short chain dehydrogenase; Pro	4e-04
PRK06077	252	PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein)	5e-04
cd11730	206	cd11730, Tthb094_like_SDR_c, Tthb094 and related p	6e-04
PRK08267	260	PRK08267, PRK08267, short chain dehydrogenase; Pro	7e-04
PRK06113	255	PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydro	7e-04
cd08951	260	cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13	0.001
pfam13460	182	pfam13460, NAD_binding_10, NADH(P)-binding	0.001
PRK08936	261	PRK08936, PRK08936, glucose-1-dehydrogenase; Provi	0.002
PRK07576	264	PRK07576, PRK07576, short chain dehydrogenase; Pro	0.002
PRK06101	240	PRK06101, PRK06101, short chain dehydrogenase; Pro	0.002
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	0.003
cd09807	274	cd09807, retinol-DH_like_SDR_c, retinol dehydrogen	0.003
PRK12938	246	PRK12938, PRK12938, acetyacetyl-CoA reductase; Pro	0.003
PRK07792	306	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein)	0.003
cd09809	284	cd09809, human_WWOX_like_SDR_c-like, human WWOX (W	0.003
cd05271	273	cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub	0.003
cd08953	436	cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup	0.004
PRK08340	259	PRK08340, PRK08340, glucose-1-dehydrogenase; Provi	0.004

>gnl|CDD|166421 PLN02780, PLN02780, ketoreductase/ oxidoreductase

 Score =  358 bits (921), Expect = e-126
 Identities = 161/193 (83%), Positives = 179/193 (92%), Gaps = 1/193 (0%)

Query: 1   MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTG 60
           ME CF++ LK+QPLWLL LF +GSLS+L+  F ILNWVYV FLRPAKNL+KYGSWALVTG
Sbjct: 1   MELCFVDKLKSQPLWLLVLFVLGSLSILKFFFTILNWVYVYFLRPAKNLKKYGSWALVTG 60

Query: 61  PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEG 120
           PTDGIGK FAFQLA+ GLNLVLV RNPDKLKDVSDSIQ+KY+KTQIK+VVVDFSGD+DEG
Sbjct: 61  PTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEG 120

Query: 121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGM 180
           V+RIKE IEGLDVGVLINNVG+SYPYARFFHEVD+ LLKNLIKVNVEGTTKVTQAVLPGM
Sbjct: 121 VKRIKETIEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGM 180

Query: 181 LKRKKGLSMLNIG 193
           LKRKKG +++NIG
Sbjct: 181 LKRKKG-AIINIG 192

Length = 320

>gnl|CDD|187614 cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs

 Score =  190 bits (486), Expect = 2e-61
 Identities = 67/141 (47%), Positives = 100/141 (70%), Gaps = 3/141 (2%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G+WA+VTG TDGIGK++A +LAK G N++L+ R  +KL  V+  I+ KY   + K++  D
Sbjct: 1   GTWAVVTGATDGIGKAYAEELAKRGFNVILISRTQEKLDAVAKEIEEKY-GVETKTIAAD 59

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
           FS   D+  ERI++ +EGLD+G+L+NNVGIS+    +F E  +  L+++I VNV  T K+
Sbjct: 60  FS-AGDDIYERIEKELEGLDIGILVNNVGISHSIPEYFLETPEDELQDIINVNVMATLKM 118

Query: 173 TQAVLPGMLKRKKGLSMLNIG 193
           T+ +LPGM+KRKKG  ++NI 
Sbjct: 119 TRLILPGMVKRKKGA-IVNIS 138

This subgroup includes various 17-beta-hydroxysteroid dehydrogenases and 3-ketoacyl-CoA reductase, these are members of the SDR family, and contain the canonical active site tetrad and glycine-rich NAD-binding motif of the classical SDRs. 3-ketoacyl-CoA reductase (KAR, aka 17beta-HSD type 12, encoded by HSD17B12) acts in fatty acid elongation; 17beta- hydroxysteroid dehydrogenases are isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. 17beta-estradiol dehydrogenase (aka 17beta-HSD type 1, encoded by HSD17B1) converts estrone to estradiol. Estradiol is the predominant female sex hormone. 17beta-HSD type 3 (aka testosterone 17-beta-dehydrogenase 3, encoded by HSD17B3) catalyses the reduction of androstenedione to testosterone, it also accepts estrogens as substrates. This subgroup also contains a putative steroid dehydrogenase let-767 from Caenorhabditis elegans, mutation in which results in hypersensitivity to cholesterol limitation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239

>gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]

 Score =  101 bits (255), Expect = 1e-26
 Identities = 50/145 (34%), Positives = 84/145 (57%), Gaps = 8/145 (5%)

Query: 51  KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVV 110
             G  AL+TG + GIG   A QLA+ G NL+LV R  DKL+ ++  ++ K    +++ + 
Sbjct: 4   MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-GVEVEVIP 62

Query: 111 VDFSGDLDEGVERIKEAIE--GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEG 168
            D S    E +ER+++ ++  G  + VL+NN G        F E+     + +I++N+  
Sbjct: 63  ADLSD--PEALERLEDELKERGGPIDVLVNNAGFGTFGP--FLELSLDEEEEMIQLNILA 118

Query: 169 TTKVTQAVLPGMLKRKKGLSMLNIG 193
            T++T+AVLPGM++R  G  ++NIG
Sbjct: 119 LTRLTKAVLPGMVERGAG-HIINIG 142

Length = 265

>gnl|CDD|236074 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 96.3 bits (240), Expect = 1e-24
 Identities = 50/142 (35%), Positives = 83/142 (58%), Gaps = 9/142 (6%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  AL+TG   GIG++ A  LAK G+N+ L+ R  + LK V++ ++A   K  I +  V 
Sbjct: 7   GKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVS 66

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARF--FHEVDQVLLKNLIKVNVEGTT 170
              ++   +E++K  +  +D  +LINN GI    ++F  F E+D    + +I+VN+ G  
Sbjct: 67  DYEEVTAAIEQLKNELGSID--ILINNAGI----SKFGKFLELDPAEWEKIIQVNLMGVY 120

Query: 171 KVTQAVLPGMLKRKKGLSMLNI 192
             T+AVLP M++R+ G  ++NI
Sbjct: 121 YATRAVLPSMIERQSG-DIINI 141

Length = 239

>gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs

 Score = 91.6 bits (228), Expect = 7e-23
 Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 10/140 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG + GIG++ A +LA+ G  +VL  RN + L +++     +       +V  D S 
Sbjct: 1   ALVTGASSGIGRAIARRLAREGAKVVLADRNEEALAELAA---IEALGGNAVAVQADVSD 57

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             D++  VE   E    LD  +L+NN GI+ P      E+       ++ VN+ G   +T
Sbjct: 58  EEDVEALVEEALEEFGRLD--ILVNNAGIARP--GPLEELTDEDWDRVLDVNLTGVFLLT 113

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           +A LP M K+  G  ++NI 
Sbjct: 114 RAALPHMKKQGGG-RIVNIS 132

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234

>gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional

 Score = 90.8 bits (226), Expect = 2e-22
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 20/140 (14%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           AL+TG + GIGK+ A   AK G +L LV R+ D L+ ++  +++   K    +  +D S 
Sbjct: 9   ALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVK--AAAYSIDLS- 65

Query: 116 DLDEGVERIKEAIE-GLDVGVLINNVGISY-------PYARFFHEVDQVLLKNLIKVNVE 167
           + +     I E +E      VLINN G++Y       P + +         + +I++N+ 
Sbjct: 66  NPEAIAPGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDW---------QWVIQLNLT 116

Query: 168 GTTKVTQAVLPGMLKRKKGL 187
              +   AVLPGM  R  GL
Sbjct: 117 SVFQCCSAVLPGMRARGGGL 136

Length = 241

>gnl|CDD|187593 cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs

 Score = 86.5 bits (215), Expect = 8e-21
 Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 9/133 (6%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           ++TG + GIG+  A+ LA+ G  LVL  R  ++L++V      +        V +D S D
Sbjct: 7   IITGASSGIGEELAYHLARLGARLVLSARREERLEEVKSEC-LELGAPSPHVVPLDMS-D 64

Query: 117 LDEGVERIKEAIE---GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
           L++  + ++EA++   GLD  +LINN GIS      FH+    + + +++VN  G   +T
Sbjct: 65  LEDAEQVVEEALKLFGGLD--ILINNAGISMR--SLFHDTSIDVDRKIMEVNYFGPVALT 120

Query: 174 QAVLPGMLKRKKG 186
           +A LP +++R +G
Sbjct: 121 KAALPHLIERSQG 133

Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR

 Score = 83.5 bits (207), Expect = 8e-20
 Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 8/138 (5%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G   L+TG + GIGK+ A +L K G N+++V R+  KL++  + I+A+   +     V  
Sbjct: 1   GKHVLITGGSSGIGKALAKELVKEGANVIIVARSESKLEEAVEEIEAEANAS--GQKVSY 58

Query: 113 FSGDLD--EGVER-IKEAIE-GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEG 168
            S DL   E VE+   +A+E G    +++N  GIS P    F ++     +  + VN  G
Sbjct: 59  ISADLSDYEEVEQAFAQAVEKGGPPDLVVNCAGISIP--GLFEDLTAEEFERGMDVNYFG 116

Query: 169 TTKVTQAVLPGMLKRKKG 186
           +  V  AVLP M +++ G
Sbjct: 117 SLNVAHAVLPLMKEQRPG 134

These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239

>gnl|CDD|226674 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

 Score = 83.5 bits (207), Expect = 8e-20
 Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 9/139 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           AL+TG + GIG++ A  LA+ G  +VL  R  ++L+     +  +       ++ +D + 
Sbjct: 9   ALITGASSGIGEATARALAEAGAKVVLAARREERLEA----LADEIGAGAALALALDVT- 63

Query: 116 DLDEGVERIKEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
           D       I+   E    + +L+NN G+         E D      +I  NV+G    T+
Sbjct: 64  DRAAVEAAIEALPEEFGRIDILVNNAGL-ALGDP-LDEADLDDWDRMIDTNVKGLLNGTR 121

Query: 175 AVLPGMLKRKKGLSMLNIG 193
           AVLPGM++RK G  ++N+G
Sbjct: 122 AVLPGMVERKSG-HIINLG 139

Length = 246

>gnl|CDD|187604 cd05346, SDR_c5, classical (c) SDR, subgroup 5

 Score = 81.9 bits (203), Expect = 4e-19
 Identities = 46/143 (32%), Positives = 81/143 (56%), Gaps = 13/143 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            L+TG + GIG++ A + AK G  L+L GR  ++L++++D + AK+   ++  + +D S 
Sbjct: 3   VLITGASSGIGEATARRFAKAGAKLILTGRRAERLQELADELGAKF-PVKVLPLQLDVS- 60

Query: 116 DLDEGVERIKEAIEGL-----DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
             D   E I+ A+E L     D+ +L+NN G++        E D    + +I  NV+G  
Sbjct: 61  --DR--ESIEAALENLPEEFRDIDILVNNAGLALGLDP-AQEADLEDWETMIDTNVKGLL 115

Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
            VT+ +LP M+ R +G  ++N+G
Sbjct: 116 NVTRLILPIMIARNQG-HIINLG 137

These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249

>gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs

 Score = 81.1 bits (201), Expect = 8e-19
 Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 23/147 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG + GIG++ A +LA  G  + +  R+ +   +  + I  K       ++  D S 
Sbjct: 3   ALVTGASRGIGRAIALRLAAEGAKVAVTDRSEEAAAETVEEI--KALGGNAAALEADVSD 60

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNV 166
              ++  VE+++     +D  +L+NN GI+    R     D +L++        +I VN+
Sbjct: 61  REAVEALVEKVEAEFGPVD--ILVNNAGIT----R-----DNLLMRMSEEDWDAVINVNL 109

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
            G   VTQAV+  M+KR+ G  ++NI 
Sbjct: 110 TGVFNVTQAVIRAMIKRRSG-RIINIS 135

This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240

>gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase

 Score = 80.7 bits (200), Expect = 8e-19
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 20/146 (13%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           ALVTG + GIG++ A +LAK G  +++  R+  +  ++V + ++A   K       V   
Sbjct: 1   ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDR 60

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNVE 167
            D+   VE I+E +  +D  +L+NN GI+          D +L++        +I  N+ 
Sbjct: 61  EDVKAVVEEIEEELGPID--ILVNNAGITR---------DNLLMRMKEEDWDAVIDTNLT 109

Query: 168 GTTKVTQAVLPGMLKRKKGLSMLNIG 193
           G   +TQAVL  M+K++ G  ++NI 
Sbjct: 110 GVFNLTQAVLRIMIKQRSG-RIINIS 134

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239

>gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs

 Score = 78.0 bits (193), Expect = 1e-17
 Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 14/141 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            L+TG + GIG + A  LA  G  ++   RNPDKL+        +     ++ + +D + 
Sbjct: 3   VLITGCSSGIGLALALALAAQGYRVIATARNPDKLES-----LGELLNDNLEVLELDVT- 56

Query: 116 DLDEGVERIKEAIE---GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
           D +     +KE IE    +DV  L+NN G          E     ++ L +VNV G  +V
Sbjct: 57  DEESIKAAVKEVIERFGRIDV--LVNNAGYGLFGP--LEETSIEEVRELFEVNVFGPLRV 112

Query: 173 TQAVLPGMLKRKKGLSMLNIG 193
           T+A LP M K+  G  ++N+ 
Sbjct: 113 TRAFLPLMRKQGSGR-IVNVS 132

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|187598 cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs

 Score = 77.3 bits (191), Expect = 2e-17
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 8/133 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            L+TG   GIG+  A + AK G  +V++  N    ++ ++    + A  ++     D S 
Sbjct: 2   VLITGGGSGIGRLLALEFAKRGAKVVILDINEKGAEETAN--NVRKAGGKVHYYKCDVSK 59

Query: 116 DLDEGVERIKEAI--EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              E V    + I  E  DV +LINN G+     +   E+    ++   +VN       T
Sbjct: 60  --REEVYEAAKKIKKEVGDVTILINNAGV--VSGKKLLELPDEEIEKTFEVNTLAHFWTT 115

Query: 174 QAVLPGMLKRKKG 186
           +A LP ML+R  G
Sbjct: 116 KAFLPDMLERNHG 128

17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243

>gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

 Score = 75.6 bits (187), Expect = 9e-17
 Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 23/147 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG + GIG++ A +LA  G  +V+   N +  + ++  ++A   + ++  +V D S 
Sbjct: 8   ALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARV--LVFDVSD 65

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGIS-------YPYARFFHEVDQVLLKNLIKVNV 166
              +   +E   EA   LD  +L+NN GI+            +    D+V     I VN+
Sbjct: 66  EAAVRALIEAAVEAFGALD--ILVNNAGITRDALLPRMSEEDW----DRV-----IDVNL 114

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
            GT  V +A LP M+K + G  ++NI 
Sbjct: 115 TGTFNVVRAALPPMIKARYG-RIVNIS 140

Length = 246

>gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

 Score = 75.3 bits (186), Expect = 1e-16
 Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG   GIG++ A +LA  G  +++V    D     ++ ++A   K + + V V    
Sbjct: 9   ALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRA 68

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
            L   V    E    LD  +L+ N GI  P    F E+D    + +I VN+ GT  +TQA
Sbjct: 69  ALKAAVAAGVEDFGRLD--ILVANAGIF-PLTP-FAEMDDEQWERVIDVNLTGTFLLTQA 124

Query: 176 VLPGMLKRKKGLSMLNIG 193
            LP +  R  G  ++   
Sbjct: 125 ALPAL-IRAGGGRIVLTS 141

Length = 251

>gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

 Score = 72.9 bits (180), Expect = 8e-16
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 14/143 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKD-VSDSIQAKYAKTQIKSVVVDFS 114
           ALVTG + GIG++ A +LA  G N+V+   + +   + +   I A   K    +V  D S
Sbjct: 8   ALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKAL--AVQGDVS 65

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYAR--FFHEVDQVLLKNLIKVNVEGTT 170
               ++  V+  K    G+D  +L+NN GI     R      + +     +I  N+ G  
Sbjct: 66  DAESVERAVDEAKAEFGGVD--ILVNNAGI----TRDNLLMRMKEEDWDRVIDTNLTGVF 119

Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
            +T+AV   M+K++ G  ++NI 
Sbjct: 120 NLTKAVARPMMKQRSG-RIINIS 141

Length = 248

>gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 22/140 (15%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           L+TG + GIG++ A ++A+ G  + LV RN + L ++   I+AK            ++ D
Sbjct: 375 LITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHA------YTCD 428

Query: 117 L--DEGVERIKEAI--EGLDVGVLINNVG------ISYPYARFFHEVDQVLLKNLIKVNV 166
           L     V+   + I  E   V  L+NN G      +     R FH+ ++      + VN 
Sbjct: 429 LTDSAAVDHTVKDILAEHGHVDYLVNNAGRSIRRSVENSTDR-FHDYERT-----MAVNY 482

Query: 167 EGTTKVTQAVLPGMLKRKKG 186
            G  ++   +LP M +R+ G
Sbjct: 483 FGAVRLILGLLPHMRERRFG 502

Length = 657

>gnl|CDD|184025 PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional

 Score = 72.6 bits (178), Expect = 1e-15
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 18/148 (12%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  A+VTG   GIGK  A +LA+ G  + +   N D    V+D I     K    ++ V 
Sbjct: 7   GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVT 66

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGI-------SYPYARFFHEVDQVLLKNLIKVN 165
               ++ G++++ E    +D  +L++N GI       +Y +A +         K +  ++
Sbjct: 67  NEDAVNAGIDKVAERFGSVD--ILVSNAGIQIVNPIENYSFADW---------KKMQAIH 115

Query: 166 VEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           V+G    T+A L  M K  +G  ++ +G
Sbjct: 116 VDGAFLTTKAALKHMYKDDRGGVVIYMG 143

Length = 262

>gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 40/140 (28%), Positives = 74/140 (52%), Gaps = 13/140 (9%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           L+TG + GIG++ A  LA  G  L+LVGRN +KL+ ++  +       + + VV D +  
Sbjct: 9   LLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP---YPGRHRWVVADLT-- 63

Query: 117 LDEGVERIKEAI-EGLDVGVLINNVGISYPYARF--FHEVDQVLLKNLIKVNVEGTTKVT 173
            + G E +     E   + VLINN G++     F    + D   ++ L+ +N+    ++T
Sbjct: 64  SEAGREAVLARAREMGGINVLINNAGVN----HFALLEDQDPEAIERLLALNLTAPMQLT 119

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           +A+LP +  +   + ++N+G
Sbjct: 120 RALLPLLRAQPSAM-VVNVG 138

Length = 263

>gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR

 Score = 71.8 bits (176), Expect = 2e-15
 Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 8/136 (5%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + GIG++ A  LA  G  + +  R  D+L+ ++D ++A+  K  +  + +D
Sbjct: 3   GKVALVTGASSGIGEATARALAAEGAAVAIAARRVDRLEALADELEAEGGKALV--LELD 60

Query: 113 FSGD--LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
            + +  +D  VER  EA+  LD  +L+NN GI         + D      +I  N+ G  
Sbjct: 61  VTDEQQVDAAVERTVEALGRLD--ILVNNAGIMLLGP--VEDADTTDWTRMIDTNLLGLM 116

Query: 171 KVTQAVLPGMLKRKKG 186
             T A LP  L R KG
Sbjct: 117 YTTHAALPHHLLRNKG 132

CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243

>gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G   ++TG   GIGK  A +LAK G ++++  RN +K ++ +  I+ +    +++ + +D
Sbjct: 1   GKVVVITGANSGIGKETARELAKRGAHVIIACRNEEKGEEAAAEIKKETGNAKVEVIQLD 60

Query: 113 FSGDLD---EGVERIKEAIEGLDVGVLINNVGISYP 145
            S  L    +  E        LD  +LINN GI  P
Sbjct: 61  LS-SLASVRQFAEEFLARFPRLD--ILINNAGIMAP 93

Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269

>gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs

 Score = 71.2 bits (175), Expect = 3e-15
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 17/147 (11%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + GIG   A  LA+ G N+V+  RN +K ++    I+      +  +   D
Sbjct: 5   GKVALVTGASRGIGFGIASGLAEAGANIVINSRNEEKAEEAQQLIEK--EGVEATAFTCD 62

Query: 113 FSGDLDEGVERIKEAIEGLDVG---VLINNVGISYPYARFFHEVDQVLLKN---LIKVNV 166
            S   +E ++   EAIE  D G   +L+NN GI        H  ++        +I VN+
Sbjct: 63  VSD--EEAIKAAVEAIEE-DFGKIDILVNNAGIIRR-----HPAEEFPEAEWRDVIDVNL 114

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
            G   V+QAV   M+K+  G  ++NI 
Sbjct: 115 NGVFFVSQAVARHMIKQGHG-KIINIC 140

Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|235506 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 71.4 bits (176), Expect = 3e-15
 Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 10/143 (6%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVV 111
           G  A+VTG + GIG++ A  LAK G  +V+    N +  +++ + I+ +        V  
Sbjct: 5   GKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIA--VKA 62

Query: 112 DFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
           D S   D++  VE+I E    +D  +L+NN GIS        ++       +I VN+ G 
Sbjct: 63  DVSSEEDVENLVEQIVEKFGKID--ILVNNAGIS--NFGLVTDMTDEEWDRVIDVNLTGV 118

Query: 170 TKVTQAVLPGMLKRKKGLSMLNI 192
             +T+  LP M+KRK G  ++NI
Sbjct: 119 MLLTRYALPYMIKRKSG-VIVNI 140

Length = 247

>gnl|CDD|237100 PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional

 Score = 71.1 bits (175), Expect = 4e-15
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 23/147 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG   GIG   A  LAK G  +V+   N +     ++++Q   A  +   V +D + 
Sbjct: 7   ALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK--AGGKAIGVAMDVTD 64

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGI-------SYPYARFFHEVDQVLLKNLIKVNV 166
              ++ G++   E   G+D  +L+NN GI        +P  ++         K +I + +
Sbjct: 65  EEAINAGIDYAVETFGGVD--ILVNNAGIQHVAPIEDFPTEKW---------KKMIAIML 113

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           +G    T+A LP M  +  G  ++N+ 
Sbjct: 114 DGAFLTTKAALPIMKAQGGG-RIINMA 139

Length = 258

>gnl|CDD|187622 cd05364, SDR_c11, classical (c) SDR, subgroup 11

 Score = 70.5 bits (173), Expect = 6e-15
 Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 11/134 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI-QAKYAKTQIKSVVVDFS 114
           A++TG + GIG   A   A+ G  L L GR+ ++L++   S  QA  ++ +I  VV D +
Sbjct: 6   AIITGSSSGIGAGTAILFARLGARLALTGRDAERLEETRQSCLQAGVSEKKILLVVADLT 65

Query: 115 GDLDEGVERI-KEAIEG---LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
              +EG +RI    +     LD  +L+NN GI         + D      ++ +N+    
Sbjct: 66  E--EEGQDRIISTTLAKFGRLD--ILVNNAGILAKGG--GEDQDIEEYDKVMNLNLRAVI 119

Query: 171 KVTQAVLPGMLKRK 184
            +T+  +P ++K K
Sbjct: 120 YLTKLAVPHLIKTK 133

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 253

>gnl|CDD|236357 PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional

 Score = 69.9 bits (172), Expect = 1e-14
 Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 11/147 (7%)

Query: 45  PAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI-QAKYAK 103
           P  +L K     LVTG  DGIG+  A   A+ G  ++L+GR  +KL+ V D I  A   +
Sbjct: 5   PKPDLLK-DRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQ 63

Query: 104 TQIKSVVVDFSG----DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK 159
             I  + +D       +  +  + I+E    LD GVL +N G+           D  + +
Sbjct: 64  PAI--IPLDLLTATPQNYQQLADTIEEQFGRLD-GVL-HNAGLLGELGPMEQ-QDPEVWQ 118

Query: 160 NLIKVNVEGTTKVTQAVLPGMLKRKKG 186
           ++++VNV  T  +TQA+LP +LK    
Sbjct: 119 DVMQVNVNATFMLTQALLPLLLKSPAA 145

Length = 247

>gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 69.8 bits (171), Expect = 1e-14
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 9/134 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN--PDKLKDVSDSIQAKYAKTQIKSVVVDF 113
           ALVTG + GIG++ A  LA+ G  +V+  R    +  + ++ +I+      +  +V  D 
Sbjct: 8   ALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEA-GGGRAAAVAADV 66

Query: 114 SGDLDE---GVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
           S D +     V   +E    +D  +L+NN GI+ P A    E+ +     +I VN+ G  
Sbjct: 67  SDDEESVEALVAAAEEEFGRID--ILVNNAGIAGPDAP-LEELTEEDWDRVIDVNLLGAF 123

Query: 171 KVTQAVLPGMLKRK 184
            +T+A LP M K++
Sbjct: 124 LLTRAALPLMKKQR 137

Length = 251

>gnl|CDD|235975 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 69.5 bits (171), Expect = 2e-14
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A+VTG + GIG+  A + A  G  +V+  RN +  + V+  I A      + + V D   
Sbjct: 8   AIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSD-EA 66

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           D++  V    E    +D  +L+NN G ++       +VD+     +  VNV+     TQA
Sbjct: 67  DVEAAVAAALERFGSVD--ILVNNAGTTHRN-GPLLDVDEAEFDRIFAVNVKSPYLWTQA 123

Query: 176 VLPGMLKRKKGLSMLNIG 193
            +P M     G +++N+ 
Sbjct: 124 AVPAMRGEGGG-AIVNVA 140

Length = 251

>gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 19/147 (12%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG   GIG + A  LA  G N+V+     +  +  +                V    
Sbjct: 4   ALVTGAASGIGLAIARALAAAGANVVVNDFGEEGAEAAAKVAGDAGGSVIYLPADVTKED 63

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGI-------SYPYARFFHEVDQVLLKNLIKVNVEG 168
           ++ + +        GLD  +L+NN GI        +P   +           +I V +  
Sbjct: 64  EIADMIAAAAAEFGGLD--ILVNNAGIQHVAPIEEFPPEDW---------DRIIAVMLTS 112

Query: 169 TTKVTQAVLPGMLKRKKGLSMLNIGKA 195
                +A LP M K+  G  ++NI  A
Sbjct: 113 AFHTIRAALPHMKKQGWG-RIINIASA 138

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. Length = 255

>gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 18/138 (13%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           L+TG + GIG++ A Q A+ G  +V V R  D L  V+D I    A     +V  D S D
Sbjct: 44  LLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITR--AGGDAMAVPCDLS-D 100

Query: 117 L---DEGVERIKEAIEGLDVGVLINNVG--ISYPYARF---FHEVDQVLLKNLIKVNVEG 168
           L   D  V  +++ I G+D  +LINN G  I  P A     +H+V++      + +N   
Sbjct: 101 LDAVDALVADVEKRIGGVD--ILINNAGRSIRRPLAESLDRWHDVERT-----MVLNYYA 153

Query: 169 TTKVTQAVLPGMLKRKKG 186
             ++ + + PGML+R  G
Sbjct: 154 PLRLIRGLAPGMLERGDG 171

Length = 293

>gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 6/139 (4%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
            L+TG + GIG     QL   G N V+   R+P    +++ ++ A +++  I  + +D +
Sbjct: 1   VLITGASRGIGLELVRQLLARGNNTVIATCRDPSAATELA-ALGASHSRLHI--LELDVT 57

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
            ++ E  E + E +    + VLINN GI + Y     EVD   L  + +VNV G   +TQ
Sbjct: 58  DEIAESAEAVAERLGDAGLDVLINNAGILHSYGP-ASEVDSEDLLEVFQVNVLGPLLLTQ 116

Query: 175 AVLPGMLKRKKGLSMLNIG 193
           A LP +L +     ++NI 
Sbjct: 117 AFLP-LLLKGARAKIINIS 134

Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233

>gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2

 Score = 68.5 bits (168), Expect = 3e-14
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 20/144 (13%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G+  L+TG T GIG + A +  + G  +++ GR  ++L       +AK     I ++V+D
Sbjct: 5   GNTVLITGGTSGIGLALARKFLEAGNTVIITGRREERLA------EAKKELPNIHTIVLD 58

Query: 113 FSGDLDEGVERIKEAI--EGLDVGVLINNVGISYPY-----ARFFHEVDQVLLKNLIKVN 165
             GD  E VE + EA+  E  ++ +LINN GI  P      A    + D       I  N
Sbjct: 59  -VGDA-ESVEALAEALLSEYPNLDILINNAGIQRPIDLRDPASDLDKADTE-----IDTN 111

Query: 166 VEGTTKVTQAVLPGMLKRKKGLSM 189
           + G  ++ +A LP + K+ +   +
Sbjct: 112 LIGPIRLIKAFLPHLKKQPEATIV 135

Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 228

>gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 9/139 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            LVTG   GIG++ A   A+ G  + +   +   L     +  A+    ++ + V D + 
Sbjct: 14  VLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAAL----AATAARLPGAKVTATVADVAD 69

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              ++   +   E   GLD  VL+NN GI+ P      E+     +  + VN+ G     
Sbjct: 70  PAQVERVFDTAVERFGGLD--VLVNNAGIAGPTGG-IDEITPEQWEQTLAVNLNGQFYFA 126

Query: 174 QAVLPGMLKRKKGLSMLNI 192
           +A +P +     G  ++ +
Sbjct: 127 RAAVPLLKASGHGGVIIAL 145

Length = 264

>gnl|CDD|181721 PRK09242, PRK09242, tropinone reductase; Provisional

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 11/154 (7%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  AL+TG + GIG + A +    G ++++V R+ D L    D +  ++ + ++  +  D
Sbjct: 9   GQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAAD 68

Query: 113 FSGDLDEGVERIKEAIE----GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEG 168
            S   DE    I + +E    GL   +L+NN G +   A   +  D+   + + + N+  
Sbjct: 69  VS--DDEDRRAILDWVEDHWDGLH--ILVNNAGGNIRKAAIDYTEDE--WRGIFETNLFS 122

Query: 169 TTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR 202
             ++++   P +LK+    +++NIG    +  VR
Sbjct: 123 AFELSRYAHP-LLKQHASSAIVNIGSVSGLTHVR 155

Length = 257

>gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR

 Score = 66.5 bits (163), Expect = 2e-13
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 9/143 (6%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVT  + GIG + A  LA+ G  + +  RN + L+  +  ++A      + +VV D
Sbjct: 1   GKVALVTAASSGIGLAIARALAREGARVAICARNRENLERAASELRA--GGAGVLAVVAD 58

Query: 113 FS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
            +   D+D  VE+  +A   +D  +L+NN G   P    F E+          + +    
Sbjct: 59  LTDPEDIDRLVEKAGDAFGRVD--ILVNNAG--GPPPGPFAELTDEDWLEAFDLKLLSVI 114

Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
           ++ +AVLPGM +R  G  ++NI 
Sbjct: 115 RIVRAVLPGMKERGWG-RIVNIS 136

This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253

>gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 9/132 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            ++TG ++GIG++ A +LA+ G  LVL  RN  +L  ++  +       +   V  D S 
Sbjct: 4   VIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELAD--HGGEALVVPTDVS- 60

Query: 116 DLDEGVERIKEAIE---GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
           D +     I+ A+    G+D  +L+NN GI+  ++RF    D  + + +++VN  G    
Sbjct: 61  DAEACERLIEAAVARFGGID--ILVNNAGITM-WSRFDELTDLSVFERVMRVNYLGAVYC 117

Query: 173 TQAVLPGMLKRK 184
           T A LP +   +
Sbjct: 118 THAALPHLKASR 129

Length = 263

>gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs

 Score = 64.6 bits (158), Expect = 6e-13
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           ALVTG   GIG     QLAK+G   V++  R+ ++ +   + ++A+    +   + V   
Sbjct: 3   ALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKLRAEGLSVRFHQLDVTDD 62

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
             ++   + ++E   GLD  +L+NN GI++          +   +  +K N  GT  VTQ
Sbjct: 63  ASIEAAADFVEEKYGGLD--ILVNNAGIAFK-GFDDSTPTREQARETMKTNFFGTVDVTQ 119

Query: 175 AVLPGMLKRKKGLSMLNI 192
           A+LP +LK+     ++N+
Sbjct: 120 ALLP-LLKKSPAGRIVNV 136

PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225

>gnl|CDD|181225 PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 11/141 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            L+TG   GIG   A  LA+ G  +++     ++ +     ++ +  K       V    
Sbjct: 12  ILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQ 71

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGIS--YPYARF-FHEVDQVLLKNLIKVNVEGTTKV 172
           +++  +E I++ I  +D  VLINN GI   +P+  F   E + V     I VN      V
Sbjct: 72  EVEAAIEHIEKDIGPID--VLINNAGIQRRHPFTEFPEQEWNDV-----IAVNQTAVFLV 124

Query: 173 TQAVLPGMLKRKKGLSMLNIG 193
           +QAV   M+KR+ G  ++NI 
Sbjct: 125 SQAVARYMVKRQAG-KIINIC 144

Length = 254

>gnl|CDD|187599 cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-like, classical (c) SDRs

 Score = 63.4 bits (154), Expect = 3e-12
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 8/134 (5%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           LVTG +DGIG+  A   A+ G  ++L+GRN +KL+ V+D I  +    Q +  ++D    
Sbjct: 8   LVTGASDGIGREAALTYARYGATVILLGRNEEKLRQVADHINEE-GGRQPQWFILDLLTC 66

Query: 117 LDEGVERIKEAIEG----LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
             E  +++ + I      LD GVL +N G+         +  QV  +++ +VNV  T  +
Sbjct: 67  TSENCQQLAQRIAVNYPRLD-GVL-HNAGLLGDVCPLSEQNPQV-WQDVXQVNVNATFML 123

Query: 173 TQAVLPGMLKRKKG 186
           TQA+LP +LK   G
Sbjct: 124 TQALLPLLLKSDAG 137

Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 236

>gnl|CDD|236040 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 9/142 (6%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + GIG + A  LA+ G  ++L GR+P KL   ++S++ +       +  V 
Sbjct: 10  GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVT 69

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARFFHEVDQVLLKNLIKVNVEGTT 170
               +   ++  +  I  +D  +L+NN G+ +  P   F  +  + LL+     N+    
Sbjct: 70  DHDAVRAAIDAFEAEIGPID--ILVNNAGMQFRTPLEDFPADAFERLLRT----NISSVF 123

Query: 171 KVTQAVLPGMLKRKKGLSMLNI 192
            V QAV   M+ R  G  ++NI
Sbjct: 124 YVGQAVARHMIARGAG-KIINI 144

Length = 255

>gnl|CDD|181305 PRK08226, PRK08226, short chain dehydrogenase; Provisional

 Score = 63.3 bits (154), Expect = 3e-12
 Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 9/136 (6%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  AL+TG   GIG+  A   A+ G NL+L+  +P+  K   +     +  T + + V D
Sbjct: 6   GKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRD 65

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARF--FHEVDQVLLKNLIKVNVEGTT 170
            +  +   ++R KE    +D  +L+NN G+     R   F ++        I +N++G  
Sbjct: 66  PAS-VAAAIKRAKEKEGRID--ILVNNAGV----CRLGSFLDMSDEDRDFHIDINIKGVW 118

Query: 171 KVTQAVLPGMLKRKKG 186
            VT+AVLP M+ RK G
Sbjct: 119 NVTKAVLPEMIARKDG 134

Length = 263

>gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A++TG   GIG + A  L K G  + ++ RN +     +  +QA   K +   V  D + 
Sbjct: 3   AIITGGASGIGLATAKLLLKKGAKVAILDRNEN--PGAAAELQAINPKVKATFVQCDVTS 60

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              L    ++  E    +D  +LINN GI    +  F        +  I VN+ G    T
Sbjct: 61  WEQLAAAFKKAIEKFGRVD--ILINNAGILDEKSYLFAGKLPPPWEKTIDVNLTGVINTT 118

Query: 174 QAVLPGMLKRKKG 186
              L  M K K G
Sbjct: 119 YLALHYMDKNKGG 131

This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244

>gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 62.2 bits (152), Expect = 6e-12
 Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 16/144 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           ALVTG   G+G++ A +LA+ G ++V+  R + +  +++ ++++A     + ++V  D +
Sbjct: 9   ALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEA--LGRRAQAVQADVT 66

Query: 115 GDLDEGVERIKEAIEGL-DVGVLINNVGISYPYARFF----HEVDQVLLKNLIKVNVEGT 169
            D       +  A+E    + +L+NN GI             E D+V     I VN+ G 
Sbjct: 67  -DKAALEAAVAAAVERFGRIDILVNNAGIF-EDKPLADMSDDEWDEV-----IDVNLSGV 119

Query: 170 TKVTQAVLPGMLKRKKGLSMLNIG 193
             + +AV+P M K++ G  ++NI 
Sbjct: 120 FHLLRAVVPPMRKQRGG-RIVNIS 142

Length = 249

>gnl|CDD|235933 PRK07097, PRK07097, gluconate 5-dehydrogenase; Provisional

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 27/151 (17%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKS--VV 110
           G  AL+TG + GIG + A   AK G  +V    N + +    D   A Y +  I++   V
Sbjct: 10  GKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELV----DKGLAAYRELGIEAHGYV 65

Query: 111 VDFSG--DLDEGVERIKEAIEGLDVGVLINNVGI-------SYPYARFFHEVDQVLLKNL 161
            D +    +   V +I++ +  +D  +L+NN GI             F         + +
Sbjct: 66  CDVTDEDGVQAMVSQIEKEVGVID--ILVNNAGIIKRIPMLEMSAEDF---------RQV 114

Query: 162 IKVNVEGTTKVTQAVLPGMLKRKKGLSMLNI 192
           I +++     V++AV+P M+K+  G  ++NI
Sbjct: 115 IDIDLNAPFIVSKAVIPSMIKKGHG-KIINI 144

Length = 265

>gnl|CDD|226476 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 12/134 (8%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           L+TG   GIG + A +  + G  +++ GRN ++L +             I + V D   D
Sbjct: 9   LITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPE------IHTEVCDV-AD 61

Query: 117 LD---EGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
            D   E VE +K+    L+V  LINN GI         E      +  I  N+    ++T
Sbjct: 62  RDSRRELVEWLKKEYPNLNV--LINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLT 119

Query: 174 QAVLPGMLKRKKGL 187
             +LP +L++ +  
Sbjct: 120 ALLLPHLLRQPEAT 133

Length = 245

>gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c) SDRs

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 12/152 (7%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG   GIG++    LAK G  +V V R    L    DS+  +     I+ V VD
Sbjct: 7   GKRALVTGAGKGIGRATVKALAKAGARVVAVSRTQADL----DSLVRE--CPGIEPVCVD 60

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
            S    +  E    ++  +D  +L+NN  ++      F EV +        VNV     V
Sbjct: 61  LSD--WDATEEALGSVGPVD--LLVNNAAVAILQP--FLEVTKEAFDRSFDVNVRAVIHV 114

Query: 173 TQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH 204
           +Q V  GM+ R    S++N+       ++  H
Sbjct: 115 SQIVARGMIARGVPGSIVNVSSQASQRALTNH 146

Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 244

>gnl|CDD|235924 PRK07063, PRK07063, short chain dehydrogenase; Provisional

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 27/155 (17%)

Query: 50  RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSV 109
           R  G  ALVTG   GIG + A   A+ G  + L   +    +  + +I    A  ++ +V
Sbjct: 4   RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAV 63

Query: 110 VVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGI---SYP-------YARFFHEVDQVL 157
             D +    +   V   +EA   LD  VL+NN GI   + P       + R F       
Sbjct: 64  PADVTDAASVAAAVAAAEEAFGPLD--VLVNNAGINVFADPLAMTDEDWRRCF------- 114

Query: 158 LKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNI 192
                 V+++G     +AVLPGM++R +G S++NI
Sbjct: 115 -----AVDLDGAWNGCRAVLPGMVERGRG-SIVNI 143

Length = 260

>gnl|CDD|187644 cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 21/152 (13%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVV 111
           G  ALVTG T GIG   A  LA  G N+VL G  +  +++ V   + AK+        V+
Sbjct: 2   GKVALVTGSTSGIGLGIARALAAAGANIVLNGFGDAAEIEAVRAGLAAKHGVK-----VL 56

Query: 112 DFSGDLDEG------VERIKEAIEGLDVGVLINNVGISY--PYARFFHEVDQVLLKNLIK 163
               DL +       V   +    G+D  +L+NN GI +  P   F    ++     +I 
Sbjct: 57  YHGADLSKPAAIEDMVAYAQRQFGGVD--ILVNNAGIQHVAPIEDF--PTEK--WDAIIA 110

Query: 164 VNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKA 195
           +N+      T+  LP M K+  G  ++NI   
Sbjct: 111 LNLSAVFHTTRLALPHMKKQGWG-RIINIASV 141

DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258

>gnl|CDD|187635 cd08930, SDR_c8, classical (c) SDR, subgroup 8

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 13/144 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            L+TG    IGK+F   L   G  L+L   N   L+ + + +   Y K ++ ++ +D   
Sbjct: 5   ILITGAAGLIGKAFCKALLSAGARLILADINAPALEQLKEELTNLY-KNRVIALELDI-- 61

Query: 116 DLDEGVERIKEAIEGLD-----VGVLINNVGIS-YPYARFFHEVDQVLLKNLIKVNVEGT 169
                 E IKE IE        + +LINN   S   +   F E        ++ VN+ G 
Sbjct: 62  ---TSKESIKELIESYLEKFGRIDILINNAYPSPKVWGSRFEEFPYEQWNEVLNVNLGGA 118

Query: 170 TKVTQAVLPGMLKRKKGLSMLNIG 193
              +QA +    K+ KG S++NI 
Sbjct: 119 FLCSQAFIKLFKKQGKG-SIINIA 141

This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|235633 PRK05872, PRK05872, short chain dehydrogenase; Provisional

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 7/141 (4%)

Query: 44  RPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAK 103
            P  +L   G   +VTG   GIG   A +L   G  L LV     +L  ++  +      
Sbjct: 2   PPMTSLA--GKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRV 59

Query: 104 TQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIK 163
             + + V D +  +    E   E   G+D  V++ N GI+         VD    + +I 
Sbjct: 60  LTVVADVTDLAA-MQAAAEEAVERFGGID--VVVANAGIA-SGGSVAQ-VDPDAFRRVID 114

Query: 164 VNVEGTTKVTQAVLPGMLKRK 184
           VN+ G     +A LP +++R+
Sbjct: 115 VNLLGVFHTVRATLPALIERR 135

Length = 296

>gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 5/132 (3%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A+VTG + G G     +LAK G  ++   RNP+K +++         +  IK   +D + 
Sbjct: 6   AIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD 65

Query: 116 DLDEGVERIKEAIEGLD-VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
                +   +  ++ +  + +L+NN G  Y    F  E+     +   + NV G   VTQ
Sbjct: 66  --QNSIHNFQLVLKEIGRIDLLVNNAG--YANGGFVEEIPVEEYRKQFETNVFGAISVTQ 121

Query: 175 AVLPGMLKRKKG 186
           AVLP M K+K G
Sbjct: 122 AVLPYMRKQKSG 133

Length = 280

>gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7

 Score = 59.0 bits (143), Expect = 9e-11
 Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 14/142 (9%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVV 111
               LVTG   GIGK+F   L   G   V    R+P     +      K     +  + +
Sbjct: 3   DKTVLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPGSAAHLVAKYGDK-----VVPLRL 57

Query: 112 DFSGDLDEGVERIKEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
           D +       E IK A     DV V+INN G+  P         + L + +  VNV G  
Sbjct: 58  DVT-----DPESIKAAAAQAKDVDVVINNAGVLKPATLLEEGALEALKQEM-DVNVFGLL 111

Query: 171 KVTQAVLPGMLKRKKGLSMLNI 192
           ++ QA  P +LK   G +++N+
Sbjct: 112 RLAQAFAP-VLKANGGGAIVNL 132

These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235

>gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 9/140 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG   GIGK+ A +LA  G  +VL   + +  +  +  +       +   V  D + 
Sbjct: 425 ALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELG---GPDRALGVACDVTD 481

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              +    E    A  G+D  ++++N GI+          D+   ++   VN  G   V 
Sbjct: 482 EAAVQAAFEEAALAFGGVD--IVVSNAGIAIS-GPIEETSDEDWRRSF-DVNATGHFLVA 537

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           +  +  M  +  G S++ I 
Sbjct: 538 REAVRIMKAQGLGGSIVFIA 557

Length = 681

>gnl|CDD|213929 TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 19/145 (13%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            LVTG   GIG + A  LA+ G  +  V RN ++L ++   ++          + V  S 
Sbjct: 1   VLVTGAAQGIGYAVARALAEAGARVAAVDRNFEQLLELVADLRRYGYPFATYKLDVADSA 60

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGI-------SYPYARFFHEVDQVLLKNLIKVNVEG 168
            +DE V+R++     +D  VL+N  GI       S        +           VN  G
Sbjct: 61  AVDEVVQRLEREYGPID--VLVNVAGILRLGAIDSLS----DEDWQATF-----AVNTFG 109

Query: 169 TTKVTQAVLPGMLKRKKGLSMLNIG 193
              V+QAV P M +R+ G +++ +G
Sbjct: 110 VFNVSQAVSPRMKRRRSG-AIVTVG 133

Members of this family are 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28), the third enzyme in the biosynthesis of 2,3-dihydroxybenzoic acid (DHB) from chorismate. The first two enzymes are isochorismate synthase (EC 5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is often followed by adenylation by the enzyme DHBA-AMP ligase (EC 2.7.7.58) to activate (DHB) for a non-ribosomal peptide synthetase. Length = 250

>gnl|CDD|187611 cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 18/141 (12%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVL---------VGRNPDKLKDVSDSIQAKYAKTQI 106
            LVTG   G+G+++A   A+ G  +V+          G++      V D I+A   K   
Sbjct: 8   VLVTGAGGGLGRAYALAFAERGAKVVVNDLGGDRKGSGKSSSAADKVVDEIKAAGGKA-- 65

Query: 107 KSVVVDFSGDLDEGVERIKEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVN 165
               V     +++G + +K AI+    V +L+NN GI     R F ++ +     +++V+
Sbjct: 66  ----VANYDSVEDGEKIVKTAIDAFGRVDILVNNAGILRD--RSFAKMSEEDWDLVMRVH 119

Query: 166 VEGTTKVTQAVLPGMLKRKKG 186
           ++G+ KVT+A  P M K+K G
Sbjct: 120 LKGSFKVTRAAWPYMRKQKFG 140

Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 250

>gnl|CDD|180408 PRK06114, PRK06114, short chain dehydrogenase; Provisional

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 6/141 (4%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVV 111
           G  A VTG   GIG+  A  LA+ G ++ L   R  D L + ++ I+A   +    +  V
Sbjct: 8   GQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADV 67

Query: 112 DFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
               DL   V R +  +  L + V  N  GI+        E +Q   + ++ +N+ G   
Sbjct: 68  TSKADLRAAVARTEAELGALTLAV--NAAGIANANPAEEMEEEQ--WQTVMDINLTGVFL 123

Query: 172 VTQAVLPGMLKRKKGLSMLNI 192
             QA    ML+   G S++NI
Sbjct: 124 SCQAEARAMLENGGG-SIVNI 143

Length = 254

>gnl|CDD|181131 PRK07814, PRK07814, short chain dehydrogenase; Provisional

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 10/140 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A+VTG   G+G + A   A+ G ++++  R   +L +V++ I+A  A  +   V  D + 
Sbjct: 13  AVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRA--AGRRAHVVAADLA- 69

Query: 116 DLDEGVERIKEAIEG---LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
             +       +A+E    LD  +++NNVG + P            L +    NV     +
Sbjct: 70  HPEATAGLAGQAVEAFGRLD--IVVNNVGGTMPNPLLSTSTKD--LADAFTFNVATAHAL 125

Query: 173 TQAVLPGMLKRKKGLSMLNI 192
           T A +P ML+   G S++NI
Sbjct: 126 TVAAVPLMLEHSGGGSVINI 145

Length = 263

>gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated

 Score = 57.9 bits (140), Expect = 3e-10
 Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 10/138 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A++TG + GIG++ A  LA+ G   VL     + + +  D I  K    + K+  VD S 
Sbjct: 9   AVITGASTGIGQASAIALAQEGAY-VLAVDIAEAVSETVDKI--KSNGGKAKAYHVDISD 65

Query: 116 D--LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
           +  + +    IKE    +D  VL NN G+     R  HE    +   ++ V++ GT  +T
Sbjct: 66  EQQVKDFASEIKEQFGRVD--VLFNNAGVDNAAGR-IHEYPVDVFDKIMAVDMRGTFLMT 122

Query: 174 QAVLPGMLKRKKGLSMLN 191
           + +LP M+  ++G S++N
Sbjct: 123 KMLLPLMM--EQGGSIIN 138

Length = 272

>gnl|CDD|188169 TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reductase

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 8/139 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           ALVTG   GIG +   +LAK G  +    G N ++ +       A       + V  D S
Sbjct: 3   ALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGAL--GFDFRVVEGDVS 60

Query: 115 GDLDEGVERIKEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              +     + +    L  + VL+NN GI+      F ++       +I  N+     VT
Sbjct: 61  -SFESCKAAVAKVEAELGPIDVLVNNAGITRD--ATFKKMTYEQWSAVIDTNLNSVFNVT 117

Query: 174 QAVLPGMLKRKKGLSMLNI 192
           Q V+ GM +R  G  ++NI
Sbjct: 118 QPVIDGMRERGWG-RIINI 135

This model represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of EC 1.1.1.36 is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. Length = 242

>gnl|CDD|187608 cd05350, SDR_c6, classical (c) SDR, subgroup 6

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            L+TG + GIG++ A + AK G N+ L  R  D+L ++   +       +++ + V    
Sbjct: 1   VLITGASSGIGRALAREFAKAGYNVALAARRTDRLDELKAELLNPNPSVEVEILDVTDEE 60

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
                +  ++  + GLD+ ++   VG          +      +  I  N+ G   + +A
Sbjct: 61  RNQLVIAELEAELGGLDLVIINAGVGKGTSLGDLSFKAF----RETIDTNLLGAAAILEA 116

Query: 176 VLPGMLKRKKG 186
            LP    + +G
Sbjct: 117 ALPQFRAKGRG 127

These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239

>gnl|CDD|187626 cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs

 Score = 57.1 bits (138), Expect = 4e-10
 Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 24/145 (16%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  AL+T    GIG++ A   A+ G N++    N +KLK++            I + V+D
Sbjct: 2   GKVALITAAAQGIGRAIALAFAREGANVIATDINEEKLKELE-------RGPGITTRVLD 54

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFH-----EVDQVLLKNLIKVNVE 167
            +    E V  + +    +D  VL N  G       F H     + +       + +NV 
Sbjct: 55  VTD--KEQVAALAKEEGRID--VLFNCAG-------FVHHGSILDCEDDDWDFAMNLNVR 103

Query: 168 GTTKVTQAVLPGMLKRKKGLSMLNI 192
               + +AVLP ML RK G S++N+
Sbjct: 104 SMYLMIKAVLPKMLARKDG-SIINM 127

Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P). Length = 241

>gnl|CDD|187627 cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR

 Score = 56.8 bits (138), Expect = 5e-10
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 11/142 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A +TG   GIGK+ A   A+ G ++ + GR P+ L+  ++ I +                
Sbjct: 6   AFITGGGTGIGKAIAKAFAELGASVAIAGRKPEVLEAAAEEISS-----ATGGRAHPIQC 60

Query: 116 DL--DEGVER-IKEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           D+   E VE  + E ++    + +LINN   ++        +     K +I +++ GT  
Sbjct: 61  DVRDPEAVEAAVDETLKEFGKIDILINNAAGNFLAP--AESLSPNGFKTVIDIDLNGTFN 118

Query: 172 VTQAVLPGMLKRKKGLSMLNIG 193
            T+AV   +++ K G S+LNI 
Sbjct: 119 TTKAVGKRLIEAKHGGSILNIS 140

TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 249

>gnl|CDD|132250 TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

 Score = 56.9 bits (137), Expect = 6e-10
 Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A+VTG   GIG +   + A+ G  + +   N +  + V+  I+AK    Q  +  +    
Sbjct: 6   AIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRD 65

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
            +D  V   ++A+  +DV  L+NN G  +     F + +  L + LI +N+ G   +  A
Sbjct: 66  SVDTAVAAAEQALGPVDV--LVNNAG--WDKFGPFTKTEPPLWERLIAINLTGALHMHHA 121

Query: 176 VLPGMLKRKKGLSMLNI 192
           VLPGM++R  G  ++NI
Sbjct: 122 VLPGMVERGAG-RIVNI 137

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. Length = 250

>gnl|CDD|235935 PRK07109, PRK07109, short chain dehydrogenase; Provisional

 Score = 57.2 bits (139), Expect = 6e-10
 Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 13/145 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            ++TG + G+G++ A   A+ G  +VL+ R  + L+ ++  I+A   +     VV D   
Sbjct: 11  VVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALA--VVADV-A 67

Query: 116 DLDEGVERIKEAIE----GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           D +  V+   +  E     +D  V  NN  ++  +   F +V     + + +V   G   
Sbjct: 68  DAEA-VQAAADRAEEELGPIDTWV--NNAMVTV-FGP-FEDVTPEEFRRVTEVTYLGVVH 122

Query: 172 VTQAVLPGMLKRKKGLSMLNIGKAE 196
            T A L  M  R +G +++ +G A 
Sbjct: 123 GTLAALRHMRPRDRG-AIIQVGSAL 146

Length = 334

>gnl|CDD|131468 TIGR02415, 23BDH, acetoin reductases

 Score = 56.3 bits (136), Expect = 8e-10
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG   GIGK  A +LAK G  + +   N +  K+ +  I       +  +  +D S 
Sbjct: 3   ALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQA--GGKAVAYKLDVSD 60

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              +   +++  E   G D  V++NN G++        E+ +  LK +  VNV+G     
Sbjct: 61  KDQVFSAIDQAAEKFGGFD--VMVNNAGVA--PITPILEITEEELKKVYNVNVKGVLFGI 116

Query: 174 QA 175
           QA
Sbjct: 117 QA 118

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PMID:11577733) [Energy metabolism, Fermentation]. Length = 254

>gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional

 Score = 56.1 bits (136), Expect = 8e-10
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 13/142 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG   G+G +FA  LA+ G  +        + ++++ +++A  A  +  ++  D + 
Sbjct: 10  ALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEA--AGGRAHAIAADLAD 67

Query: 116 DLDEGVERIKEAIE----GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
                V+R  +A      GLD   L+NN GI+   ++   E+D      ++ VNV GT  
Sbjct: 68  --PASVQRFFDAAAAALGGLD--GLVNNAGIT--NSKSATELDIDTWDAVMNVNVRGTFL 121

Query: 172 VTQAVLPGMLKRKKGLSMLNIG 193
           + +A LP  L+      ++N+ 
Sbjct: 122 MLRAALP-HLRDSGRGRIVNLA 142

Length = 250

>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 9/139 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            LVTG   GIG++   + A+ G  +V+  RN ++ ++ +DS+   +      ++ +D S 
Sbjct: 8   VLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDH-----HALAMDVSD 62

Query: 116 DLD--EGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
           +    EG E++      +D  VL+NN G++ P      +        L  +N+ G   V 
Sbjct: 63  EAQIREGFEQLHREFGRID--VLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVA 120

Query: 174 QAVLPGMLKRKKGLSMLNI 192
           +  L  M+++  G +++N+
Sbjct: 121 REALRLMIEQGHGAAIVNV 139

Length = 520

>gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 9/134 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKT--QIKSVVVDF 113
           ALVTG   GIG + A +L   G  ++    +     D +     +Y  T  Q++   +D 
Sbjct: 5   ALVTGAKRGIGSAIARELLNDGYRVIATYFSG---NDCAKDWFEEYGFTEDQVRLKELDV 61

Query: 114 SGDLDEGVERIKEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
           + D +E  E + E  E    V +L+NN GI+      F  +      ++I  N+     V
Sbjct: 62  T-DTEECAEALAEIEEEEGPVDILVNNAGITRDSV--FKRMSHQEWNDVINTNLNSVFNV 118

Query: 173 TQAVLPGMLKRKKG 186
           TQ +   M ++  G
Sbjct: 119 TQPLFAAMCEQGYG 132

Length = 245

>gnl|CDD|187597 cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 25/157 (15%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-----NPDKLKDVSDSIQAKYAKTQIK 107
           G  A VTG + GIG++ A +LAK G  +V+  +     +    K +  +I+    + +  
Sbjct: 3   GKVAFVTGASRGIGRAIALRLAKAGATVVVAAKTASEGDNGSAKSLPGTIEETAEEIEAA 62

Query: 108 -----SVVVDFSGDLDEGVERIKEAIE---GLDVGVLINNVGISYPYARFFHEVDQVLLK 159
                 +VVD   D D+    ++  ++    LD  +L+NN G     A +   V+    K
Sbjct: 63  GGQALPIVVDVR-DEDQVRALVEATVDQFGRLD--ILVNNAG-----AIWLSLVEDTPAK 114

Query: 160 N---LIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
               + +VN+ GT  ++QA LP M+K  +G  +LNI 
Sbjct: 115 RFDLMQRVNLRGTYLLSQAALPHMVKAGQGH-ILNIS 150

This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246

>gnl|CDD|187631 cd05373, SDR_c10, classical (c) SDR, subgroup 10

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 7/133 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A V G  DG+G + A + A  G ++ L  R   KL+ +   I         K+V  D   
Sbjct: 2   AAVVGAGDGLGAAIARRFAAEGFSVALAARREAKLEALLVDIIRDAG-GSAKAVPTDARD 60

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             ++    + I+E I  L+  VL+ N G +        E    + + + ++   G     
Sbjct: 61  EDEVIALFDLIEEEIGPLE--VLVYNAGANVW--FPILETTPRVFEKVWEMAAFGGFLAA 116

Query: 174 QAVLPGMLKRKKG 186
           +     ML R +G
Sbjct: 117 REAAKRMLARGRG 129

This subgroup resembles the classical SDRs, but has an incomplete match to the canonical glycine rich NAD-binding motif and lacks the typical active site tetrad (instead of the critical active site Tyr, it has Phe, but contains the nearby Lys). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 238

>gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 3/131 (2%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           A+VTG + GIG++ A +LA  G ++ +    + D+  +V   + A   +       +   
Sbjct: 4   AIVTGASRGIGRAIATELAARGFDIAINDLPDDDQATEVVAEVLAAGRRAIYFQADIGEL 63

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
            D +  +++  E    LD   L+NN GI+        ++ +     LI +N+ G   +TQ
Sbjct: 64  SDHEALLDQAWEDFGRLD--CLVNNAGIAVRPRGDLLDLTEDSFDRLIAINLRGPFFLTQ 121

Query: 175 AVLPGMLKRKK 185
           AV   M+++  
Sbjct: 122 AVARRMVEQPD 132

This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 255

>gnl|CDD|187601 cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, classical (c) SDRs

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 7/131 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG + GIG + A  L + G+ +V   R  DK++ ++   Q+      +     D S 
Sbjct: 9   ALVTGASVGIGAAVARALVQHGMKVVGCARRVDKIEALAAECQSA-GYPTLFPYQCDLSN 67

Query: 116 --DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              +      I+   +G+D  V INN G++ P             K +  VNV   +  T
Sbjct: 68  EEQILSMFSAIRTQHQGVD--VCINNAGLARP--EPLLSGKTEGWKEMFDVNVLALSICT 123

Query: 174 QAVLPGMLKRK 184
           +     M +R 
Sbjct: 124 REAYQSMKERN 134

Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|187642 cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 9/143 (6%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G   +VTG   GIG+  A +LA  G  ++LV R+ + + +V   I A  A         D
Sbjct: 4   GKVVVVTGAAQGIGRGVAERLAGEGARVLLVDRS-ELVHEVLAEILA--AGDAAHVHTAD 60

Query: 113 FSGDLD-EGVERIKEAIEGLD-VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
                  +GV  ++ A+E    V VLINNVG +  +A+ +   ++  ++  I+ ++  T 
Sbjct: 61  LETYAGAQGV--VRAAVERFGRVDVLINNVGGTI-WAKPYEHYEEEQIEAEIRRSLFPTL 117

Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
              +AVLP ML+R++G  ++N+ 
Sbjct: 118 WCCRAVLPHMLERQQG-VIVNVS 139

DHB DH (aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase) catalyzes the NAD-dependent conversion of 1,2-dihydroxycyclohexa-3,4-diene carboxylate to a catechol. This subgroup also contains Pseudomonas putida F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase, the second enzyme in the pathway for catabolism of p-cumate catabolism. This subgroup shares the glycine-rich NAD-binding motif of the classical SDRs and shares the same catalytic triad; however, the upstream Asn implicated in cofactor binding or catalysis in other SDRs is generally substituted by a Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256

>gnl|CDD|181044 PRK07577, PRK07577, short chain dehydrogenase; Provisional

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 32/139 (23%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            LVTG T GIG + + +LA  G  ++ + R+                         DF G
Sbjct: 6   VLVTGATKGIGLALSLRLANLGHQVIGIARSAID----------------------DFPG 43

Query: 116 DL------DEG--VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVE 167
           +L      D       + +  E   V  ++NNVGI+ P      ++D   L+++  +NV 
Sbjct: 44  ELFACDLADIEQTAATLAQINEIHPVDAIVNNVGIALPQP--LGKIDLAALQDVYDLNVR 101

Query: 168 GTTKVTQAVLPGMLKRKKG 186
              +VTQA L GM  R++G
Sbjct: 102 AAVQVTQAFLEGMKLREQG 120

Length = 234

>gnl|CDD|187625 cd05367, SPR-like_SDR_c, sepiapterin reductase (SPR)-like, classical (c) SDRs

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 16/143 (11%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLN--LVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           ++TG + GIG++ A +L K G    +VL+ R+ + L       Q    + +    V    
Sbjct: 3   ILTGASRGIGRALAEELLKRGSPSVVVLLARSEEPL-------QELKEELRPGLRVTTVK 55

Query: 115 GDLD--EGVERIKEAIEGLDVG--VLINNVGISYPYAR-FFHEVDQVLLKNLIKVNVEGT 169
            DL    GVE++ EAI  LD    +LINN G   P ++  F ++D+  L+    +N+   
Sbjct: 56  ADLSDAAGVEQLLEAIRKLDGERDLLINNAGSLGPVSKIEFIDLDE--LQKYFDLNLTSP 113

Query: 170 TKVTQAVLPGMLKRKKGLSMLNI 192
             +T  +L    KR    +++N+
Sbjct: 114 VCLTSTLLRAFKKRGLKKTVVNV 136

Human SPR, a member of the SDR family, catalyzes the NADP-dependent reduction of sepiaptern to 7,8-dihydrobiopterin (BH2). In addition to SPRs, this subgroup also contains Bacillus cereus yueD, a benzil reductase, which catalyzes the stereospecific reduction of benzil to (S)-benzoin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 241

>gnl|CDD|180446 PRK06180, PRK06180, short chain dehydrogenase; Provisional

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 12/138 (8%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS-- 114
           L+TG + G G++ A      G  +V   R+     D            +  + ++D +  
Sbjct: 8   LITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADF-----EALHPDRALARLLDVTDF 62

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
             +D  V   +     +DV  L+NN G  +  A    E     ++   +VNV G   +T+
Sbjct: 63  DAIDAVVADAEATFGPIDV--LVNNAGYGHEGA--IEESPLAEMRRQFEVNVFGAVAMTK 118

Query: 175 AVLPGMLKRKKGLSMLNI 192
           AVLPGM  R++G  ++NI
Sbjct: 119 AVLPGMRARRRGH-IVNI 135

Length = 277

>gnl|CDD|183772 PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 39/148 (26%), Positives = 73/148 (49%), Gaps = 25/148 (16%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            +VTG   GIG+  A + A  G  +VLV R+ + + +V+  ++A   +       +  + 
Sbjct: 11  VVVTGAAQGIGRGVALRAAAEGARVVLVDRS-ELVHEVAAELRAAGGE------ALALTA 63

Query: 116 DLD--EGVER-IKEAIE---GLDVGVLINNVGISY---PYARFF-HEVDQVLLKNLIKVN 165
           DL+   G +  +  A+E    +D  VLINNVG +    P+  +   +++  + ++L    
Sbjct: 64  DLETYAGAQAAMAAAVEAFGRID--VLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFP-- 119

Query: 166 VEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
              T    +AVLP ML +  G +++N+ 
Sbjct: 120 ---TLWCCRAVLPHMLAQGGG-AIVNVS 143

Length = 260

>gnl|CDD|236094 PRK07774, PRK07774, short chain dehydrogenase; Provisional

 Score = 54.0 bits (130), Expect = 6e-09
 Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 11/136 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A+VTG   GIG+++A  LA+ G ++V+   N +  + V+  I A        +V VD S 
Sbjct: 9   AIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGG--TAIAVQVDVS- 65

Query: 116 DLDEG---VERIKEAIEGLDVGVLINNVGISYPYAR--FFHEVDQVLLKNLIKVNVEGTT 170
           D D      +    A  G+D   L+NN  I Y   +      V     K  + VN++G  
Sbjct: 66  DPDSAKAMADATVSAFGGID--YLVNNAAI-YGGMKLDLLITVPWDYYKKFMSVNLDGAL 122

Query: 171 KVTQAVLPGMLKRKKG 186
             T+AV   M KR  G
Sbjct: 123 VCTRAVYKHMAKRGGG 138

Length = 250

>gnl|CDD|180823 PRK07074, PRK07074, short chain dehydrogenase; Provisional

 Score = 53.6 bits (129), Expect = 7e-09
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 7/140 (5%)

Query: 54  SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF 113
             ALVTG   GIG++ A +    G  ++ +  +   L   +D++       +   V  D 
Sbjct: 3   RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDA----RFVPVACDL 58

Query: 114 SGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
           +            A E   V VL+ N G +   A   H+      +    +N+E      
Sbjct: 59  TDAASLAAALANAAAERGPVDVLVANAGAAR--AASLHDTTPASWRADNALNLEAAYLCV 116

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           +AVL GMLKR +G +++NIG
Sbjct: 117 EAVLEGMLKRSRG-AVVNIG 135

Length = 257

>gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated

 Score = 53.4 bits (129), Expect = 9e-09
 Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 18/142 (12%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVV 111
           G   LVTG   GIG++F  QL   G   V    R+P+ + D+   +           + +
Sbjct: 6   GKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTDLGPRVVP---------LQL 56

Query: 112 DFSGDLDEGVERIKEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
           D +         +  A E   DV +L+NN GI    +    E D+  L+  ++ N  G  
Sbjct: 57  DVTDP-----ASVAAAAEAASDVTILVNNAGIFRTGS-LLLEGDEDALRAEMETNYFGPL 110

Query: 171 KVTQAVLPGMLKRKKGLSMLNI 192
            + +A  P +L    G +++N+
Sbjct: 111 AMARAFAP-VLAANGGGAIVNV 131

Length = 238

>gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR

 Score = 53.1 bits (128), Expect = 9e-09
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 12/133 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG + GIG   A  LA+ G  + L  RNP+ L           +   +++V  D   
Sbjct: 3   ALVTGASRGIGIEIARALARDGYRVSLGLRNPEDLA------ALSASGGDVEAVPYDARD 56

Query: 116 DLDEG--VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             D    V+ +++    +D  VL++N GI  P      E     L+    +NV    ++T
Sbjct: 57  PEDARALVDALRDRFGRID--VLVHNAGIGRPTT--LREGSDAELEAHFSINVIAPAELT 112

Query: 174 QAVLPGMLKRKKG 186
           +A+LP + +   G
Sbjct: 113 RALLPALREAGSG 125

This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223

>gnl|CDD|180773 PRK06949, PRK06949, short chain dehydrogenase; Provisional

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + G+G  FA  LA+ G  +VL  R  ++LK++   I+A+     + S+ V 
Sbjct: 9   GKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVT 68

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
               +   V   +     +D  +L+NN G+S    +   +V       +   N  G   V
Sbjct: 69  DYQSIKAAVAHAETEAGTID--ILVNNSGVS--TTQKLVDVTPADFDFVFDTNTRGAFFV 124

Query: 173 TQAVLPGMLKRKKG 186
            Q V   M+ R KG
Sbjct: 125 AQEVAKRMIARAKG 138

Length = 258

>gnl|CDD|182531 PRK10538, PRK10538, malonic semialdehyde reductase; Provisional

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 13/140 (9%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           LVTG T G G+    +  + G  ++  GR  ++L+++ D +       Q+    V     
Sbjct: 4   LVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLD---VRNRAA 60

Query: 117 LDEGVERIKEAIEGLDVGVLINNVGISY---PYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
           ++E +  +      +DV  L+NN G++    P     H+      + +I  N +G   +T
Sbjct: 61  IEEMLASLPAEWRNIDV--LVNNAGLALGLEPA----HKASVEDWETMIDTNNKGLVYMT 114

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           +AVLPGM++R  G  ++NIG
Sbjct: 115 RAVLPGMVERNHG-HIINIG 133

Length = 248

>gnl|CDD|235925 PRK07067, PRK07067, sorbitol dehydrogenase; Provisional

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 11/144 (7%)

Query: 50  RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSV 109
           R  G  AL+TG   GIG++ A +    G  +V+    P + +  +  I          +V
Sbjct: 3   RLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGP-----AAIAV 57

Query: 110 VVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVE 167
            +D +    +D  V    E   G+D  +L NN  + +  A    ++ +     L  VNV+
Sbjct: 58  SLDVTRQDSIDRIVAAAVERFGGID--ILFNNAAL-FDMAPIL-DISRDSYDRLFAVNVK 113

Query: 168 GTTKVTQAVLPGMLKRKKGLSMLN 191
           G   + QAV   M+++ +G  ++N
Sbjct: 114 GLFFLMQAVARHMVEQGRGGKIIN 137

Length = 257

>gnl|CDD|235725 PRK06179, PRK06179, short chain dehydrogenase; Provisional

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 21/142 (14%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG + GIG++ A +LA+ G  +    RNP +                ++ + +D + 
Sbjct: 7   ALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAA----------PIPGVELLELDVTD 56

Query: 116 DLDEGVER-IKEAI--EG-LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           D    V+  + E I   G +DV  L+NN G+    A     + Q   + L   NV G  +
Sbjct: 57  D--ASVQAAVDEVIARAGRIDV--LVNNAGVGLAGAAEESSIAQA--QALFDTNVFGILR 110

Query: 172 VTQAVLPGMLKRKKGLSMLNIG 193
           +T+AVLP M  +  G  ++NI 
Sbjct: 111 MTRAVLPHMRAQGSGR-IINIS 131

Length = 270

>gnl|CDD|181139 PRK07832, PRK07832, short chain dehydrogenase; Provisional

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 15/146 (10%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
             VTG   GIG++ A +LA  G  L L  R+ D L       +A    T  +   +D S 
Sbjct: 3   CFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGG-TVPEHRALDIS- 60

Query: 116 DLDEGVE---RIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVL---LKNLIKVNVEGT 169
           D D        I  A   +D  V++N  GIS      +  VD++     + ++ VN+ G 
Sbjct: 61  DYDAVAAFAADIHAAHGSMD--VVMNIAGIS-----AWGTVDRLTHEQWRRMVDVNLMGP 113

Query: 170 TKVTQAVLPGMLKRKKGLSMLNIGKA 195
             V +  +P M+   +G  ++N+  A
Sbjct: 114 IHVIETFVPPMVAAGRGGHLVNVSSA 139

Length = 272

>gnl|CDD|187664 cd09763, DHRS1-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 14/149 (9%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-DKLKDVSDSIQAKYAKTQIKSVVV 111
           G  ALVTG + GIG+  A QL + G  + + GR    +L   ++ I+A+  K     V  
Sbjct: 3   GKIALVTGASRGIGRGIALQLGEAGATVYITGRTILPQLPGTAEEIEARGGKCI--PVRC 60

Query: 112 DFSGDLD--EGVERIKEAIEG-LDVGVLINNV-----GISYPYARFFHEVDQVLLKNLIK 163
           D S D +     ER+    +G LD  +L+NN       I    A+ F E    +  ++  
Sbjct: 61  DHSDDDEVEALFERVAREQQGRLD--ILVNNAYAAVQLILVGVAKPFWEEPPTIWDDINN 118

Query: 164 VNVEGTTKVTQAVLPGMLKRKKGLSMLNI 192
           V +      +    P M+K  KGL ++ I
Sbjct: 119 VGLRAHYACSVYAAPLMVKAGKGL-IVII 146

This subgroup includes human DHRS1 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 265

>gnl|CDD|181159 PRK07890, PRK07890, short chain dehydrogenase; Provisional

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 15/137 (10%)

Query: 60  GPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDE 119
           GP  G+G++ A + A+ G ++VL  R  ++L +V+  I     +    +V  D +   DE
Sbjct: 14  GP--GLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRAL--AVPTDIT---DE 66

Query: 120 G-----VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
                 V    E    +D   L+NN     P  +   + D    + +I++NV GT ++TQ
Sbjct: 67  DQCANLVALALERFGRVD--ALVNN-AFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQ 123

Query: 175 AVLPGMLKRKKGLSMLN 191
           A  P + +    + M+N
Sbjct: 124 AFTPALAESGGSIVMIN 140

Length = 258

>gnl|CDD|180723 PRK06841, PRK06841, short chain dehydrogenase; Provisional

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 17/139 (12%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  A+VTG   GIG + A   A  G  + L+ R+     DV++ + A+      K +V D
Sbjct: 15  GKVAVVTGGASGIGHAIAELFAAKGARVALLDRSE----DVAE-VAAQLLGGNAKGLVCD 69

Query: 113 FSGDLDE---GVERIKEAIEGLDVGVLINNVGISY--PYARFFHEVDQVLLKNLIKVNVE 167
            S D       V  +  A   +D  +L+N+ G++   P      +V +      I +N++
Sbjct: 70  VS-DSQSVEAAVAAVISAFGRID--ILVNSAGVALLAPA----EDVSEEDWDKTIDINLK 122

Query: 168 GTTKVTQAVLPGMLKRKKG 186
           G+  + QAV   M+    G
Sbjct: 123 GSFLMAQAVGRHMIAAGGG 141

Length = 255

>gnl|CDD|187610 cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 5/132 (3%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYA-KTQIKSVVVDFS 114
           A+VTG + GIG + A  LA+ G ++ ++  +  + ++ ++ +  KY  KT+     V   
Sbjct: 11  AIVTGGSRGIGLAIARALAEAGADVAIIYNSAPRAEEKAEELAKKYGVKTKAYKCDVSSQ 70

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
             +++  ++I++    +D  +LI N GI+       +  +Q     +I VN+ G     Q
Sbjct: 71  ESVEKTFKQIQKDFGKID--ILIANAGITVHKPALDYTYEQW--NKVIDVNLNGVFNCAQ 126

Query: 175 AVLPGMLKRKKG 186
           A      K+ KG
Sbjct: 127 AAAKIFKKQGKG 138

NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 252

>gnl|CDD|180448 PRK06182, PRK06182, short chain dehydrogenase; Validated

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 23/143 (16%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG + GIGK+ A +LA  G  +    R  DK++D+        A   +  + +D + 
Sbjct: 6   ALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDL--------ASLGVHPLSLDVTD 57

Query: 116 D--LDEGVERIKEAIEGLDVGVLINNVGI-SYPYARFFHEVDQVLL---KNLIKVNVEGT 169
           +  +   V+ I      +D  VL+NN G  SY        ++ V +   +   +VN+ G 
Sbjct: 58  EASIKAAVDTIIAEEGRID--VLVNNAGYGSY------GAIEDVPIDEARRQFEVNLFGA 109

Query: 170 TKVTQAVLPGMLKRKKGLSMLNI 192
            ++TQ VLP M  ++ G  ++NI
Sbjct: 110 ARLTQLVLPHMRAQRSGR-IINI 131

Length = 273

>gnl|CDD|181295 PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 28/152 (18%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + G+G   A  L + G  +VL  R  ++L++      A      I ++   
Sbjct: 12  GKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEA----AAHLEALGIDALW-- 65

Query: 113 FSGDL--DEGVERI-KEAIEGL-DVGVLINNVGIS-------YPYARFFHEVDQVLLKNL 161
            + D+  +  +ER+ +E +E    V +L+NN G +       +P   +    D+V     
Sbjct: 66  IAADVADEADIERLAEETLERFGHVDILVNNAGATWGAPAEDHPVEAW----DKV----- 116

Query: 162 IKVNVEGTTKVTQAVLP-GMLKRKKGLSMLNI 192
           + +NV G   ++QAV    M+ R  G  ++N+
Sbjct: 117 MNLNVRGLFLLSQAVAKRSMIPRGYG-RIINV 147

Length = 259

>gnl|CDD|180576 PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 12/142 (8%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNL-VLVGRNPDKLKDVSDSIQAKYAKTQIKSVVV 111
           G  AL+TG T GIG++ A    + G  + VL     ++ K++    + K   T IK  V 
Sbjct: 7   GKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKEL----REKGVFT-IKCDVG 61

Query: 112 DFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           +    + +  E +++    +DV  L+NN GI Y     F E D+     +IK+N+ G   
Sbjct: 62  N-RDQVKKSKEVVEKEFGRVDV--LVNNAGIMYLMP--FEEFDEEKYNKMIKINLNGAIY 116

Query: 172 VTQAVLPGMLKRKKGLSMLNIG 193
            T   LP +LK  K  +++NI 
Sbjct: 117 TTYEFLP-LLKLSKNGAIVNIA 137

Length = 255

>gnl|CDD|181762 PRK09291, PRK09291, short chain dehydrogenase; Provisional

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 10/130 (7%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           L+TG   G G+  A +LA+ G N++   +   ++  +    +A      ++   +D +  
Sbjct: 6   LITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRA--EAARRGLALRVEKLDLTDA 63

Query: 117 LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAV 176
           +D       +A E  DV VL+NN GI    A    ++   L++ L + NV G  ++TQ  
Sbjct: 64  ID-----RAQAAE-WDVDVLLNNAGIGEAGAVV--DIPVELVRELFETNVFGPLELTQGF 115

Query: 177 LPGMLKRKKG 186
           +  M+ R KG
Sbjct: 116 VRKMVARGKG 125

Length = 257

>gnl|CDD|168186 PRK05693, PRK05693, short chain dehydrogenase; Provisional

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 16/140 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            L+TG + GIG++ A      G  +    R  +   DV     A +   Q+    V+   
Sbjct: 4   VLITGCSSGIGRALADAFKAAGYEVWATARKAE---DVEALAAAGFTAVQLD---VNDGA 57

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISY--PYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
            L    E ++    GLD  VLINN G     P      E     ++   + NV     VT
Sbjct: 58  ALARLAEELEAEHGGLD--VLINNAGYGAMGPLLDGGVEA----MRRQFETNVFAVVGVT 111

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           +A+ P +L+R +GL ++NIG
Sbjct: 112 RALFP-LLRRSRGL-VVNIG 129

Length = 274

>gnl|CDD|181113 PRK07775, PRK07775, short chain dehydrogenase; Provisional

 Score = 51.3 bits (123), Expect = 6e-08
 Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 6/132 (4%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALV G + GIG + A +LA  G  + L  R  +K +++ D I+A     +  +  +D + 
Sbjct: 13  ALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRA--DGGEAVAFPLDVT- 69

Query: 116 DLDEGVERIKEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
           D D     + +A E L ++ VL++  G +Y      HE+     ++ +++++ G  ++  
Sbjct: 70  DPDSVKSFVAQAEEALGEIEVLVSGAGDTYFGK--LHEISTEQFESQVQIHLVGANRLAT 127

Query: 175 AVLPGMLKRKKG 186
           AVLPGM++R++G
Sbjct: 128 AVLPGMIERRRG 139

Length = 274

>gnl|CDD|180617 PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 50.7 bits (122), Expect = 6e-08
 Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 25/145 (17%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           L+TG   GIG + A      G  +  V           D             + +D S D
Sbjct: 9   LITGAASGIGLAQARAFLAQGAQVYGV-----------DKQDKPDLSGNFHFLQLDLSDD 57

Query: 117 LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAV 176
           L+   + +        V +L N  GI   Y     +      +++   N+  T  +T+A 
Sbjct: 58  LEPLFDWVPS------VDILCNTAGILDDYKPL-LDTSLEEWQHIFDTNLTSTFLLTRAY 110

Query: 177 LPGMLKRKKGLSMLNIGKAELMCSV 201
           LP ML+RK G+ ++N      MCS+
Sbjct: 111 LPQMLERKSGI-IIN------MCSI 128

Length = 235

>gnl|CDD|235703 PRK06125, PRK06125, short chain dehydrogenase; Provisional

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 49  LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKS 108
           L   G   L+TG + GIG + A   A  G +L LV R+ D L+ ++  ++A +    +  
Sbjct: 3   LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHG-VDVAV 61

Query: 109 VVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEG 168
             +D S    E  E++      +D  +L+NN G + P      +VD    +   ++ V G
Sbjct: 62  HALDLS--SPEAREQLAAEAGDID--ILVNNAG-AIP-GGGLDDVDDAAWRAGWELKVFG 115

Query: 169 TTKVTQAVLPGMLKRKKGLSMLNIGKA 195
              +T+   P M  R  G+ +  IG A
Sbjct: 116 YIDLTRLAYPRMKARGSGVIVNVIGAA 142

Length = 259

>gnl|CDD|187600 cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 12/143 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A+VTG   G+G + A  L   G  +VL     ++ +  +  +         +   +D + 
Sbjct: 8   AIVTGGARGLGLAHARLLVAEGAKVVLSDILDEEGQAAAAEL-----GDAARFFHLDVTD 62

Query: 116 DLD--EGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
           +      V+  +EA   LD  VL+NN GI                + L+ +N+ G    T
Sbjct: 63  EDGWTAVVDTAREAFGRLD--VLVNNAGILTG--GTVETTTLEEWRRLLDINLTGVFLGT 118

Query: 174 QAVLPGMLKRKKGLSMLNIGKAE 196
           +AV+P M +   G S++N+   E
Sbjct: 119 RAVIPPMKEAGGG-SIINMSSIE 140

This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 247

>gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 13/144 (9%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  AL+TG + GIG + A  L   G  + +  R+  +L++ +  +  K     + + V D
Sbjct: 6   GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRD 65

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLL---KNLIKVNVEGT 169
              D+   V+ I  A  GLD  VLI N G+ +     F  V+++     + +I  N+ G 
Sbjct: 66  E-ADVQRAVDAIVAAFGGLD--VLIANAGVGH-----FAPVEELTPEEWRLVIDTNLTGA 117

Query: 170 TKVTQAVLPGMLKRKKGLSMLNIG 193
               +A +P  LKR  G  ++NI 
Sbjct: 118 FYTIKAAVPA-LKRGGG-YIINIS 139

Length = 237

>gnl|CDD|181297 PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 50.3 bits (121), Expect = 9e-08
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           ++TG   G+G++ A  LA+ G  L L+  N +KL++      A   + +  +  V    D
Sbjct: 9   VITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEED 68

Query: 117 LDEGVERIKEAIEGLDVGVLINNVGI 142
           ++    +I E    L+   LINN GI
Sbjct: 69  VEATFAQIAEDFGQLN--GLINNAGI 92

Length = 253

>gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 24/154 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A++TG    +G + A +LA+ G  + ++ RN +K + V   I+A  A  +  +V  D   
Sbjct: 13  AVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKA--AGGEALAVKADV-- 68

Query: 116 DLDEG-VERIKEAIEGLDVG---VLINNVGISYPYARFFHEVDQVL--LKNLIKVNVEGT 169
            LD+  +E+ ++ I   D G   +LIN  G ++P A   +E  +++   K    ++ EG 
Sbjct: 69  -LDKESLEQARQQILE-DFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGF 126

Query: 170 TKV-----------TQAVLPGMLKRKKGLSMLNI 192
             V           TQ     M+ RK G +++NI
Sbjct: 127 EFVFDLNLLGTLLPTQVFAKDMVGRKGG-NIINI 159

Length = 278

>gnl|CDD|180300 PRK05875, PRK05875, short chain dehydrogenase; Provisional

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 7/116 (6%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           LVTG   GIGK  A  L   G  +++VGRNPDKL   ++ I+A      ++    D + D
Sbjct: 11  LVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVT-D 69

Query: 117 LDEGVERIKEAIE---GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
            D+    +  A      L  GV ++  G S         +D    +  + +NV GT
Sbjct: 70  EDQVARAVDAATAWHGRLH-GV-VHCAGGSETIGPITQ-IDSDAWRRTVDLNVNGT 122

Length = 276

>gnl|CDD|235794 PRK06398, PRK06398, aldose dehydrogenase; Validated

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 16/137 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A+VTG + GIGK+   +L + G N++      +   +  D  +          V V    
Sbjct: 9   AIVTGGSQGIGKAVVNRLKEEGSNVINFDIK-EPSYNDVDYFK----------VDVSNKE 57

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
            + +G++ +      +D+  L+NN GI   Y    H V++     +I VNV G   +++ 
Sbjct: 58  QVIKGIDYVISKYGRIDI--LVNNAGIE-SYGAI-HAVEEDEWDRIINVNVNGIFLMSKY 113

Query: 176 VLPGMLKRKKGLSMLNI 192
            +P MLK+ KG  ++NI
Sbjct: 114 TIPYMLKQDKG-VIINI 129

Length = 258

>gnl|CDD|187607 cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 11/143 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
            LVTG + G+G + A   A+ G  +V+   R+ +  + V+     +     I++ V D  
Sbjct: 3   VLVTGASRGLGAAIARSFAREGARVVVNYYRSTESAEAVAAEAGER--AIAIQADVRDRD 60

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPY----ARFFHEVDQVLLKNLIKVNVEGTT 170
             +   +E  K     +D   ++NN  I +P+     + F  +D    +  ++  V+G  
Sbjct: 61  -QVQAMIEEAKNHFGPVDT--IVNNALIDFPFDPDQRKTFDTIDWEDYQQQLEGAVKGAL 117

Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
            + QAVLP   +R  G  ++NIG
Sbjct: 118 NLLQAVLPDFKERGSG-RVINIG 139

This subgroup includes Rhizobium sp. NGR234 FabG1. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246

>gnl|CDD|187649 cd08945, PKR_SDR_c, Polyketide ketoreductase, classical (c) SDR

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 7/139 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG T GIG + A +L K GL + +  R  + L      ++    +   ++  V    
Sbjct: 6   ALVTGATSGIGLAIARRLGKEGLRVFVCARGEEGLATTVKELREAGVEADGRTCDVRSVP 65

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           +++  V         +D  VL+NN G S   A    E+   L  ++++ N+ G  +VT+ 
Sbjct: 66  EIEALVAAAVARYGPID--VLVNNAGRSGGGA--TAELADELWLDVVETNLTGVFRVTKE 121

Query: 176 VLP--GMLKRKKGLSMLNI 192
           VL   GML+R  G  ++NI
Sbjct: 122 VLKAGGMLERGTG-RIINI 139

Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 258

>gnl|CDD|237188 PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 25/142 (17%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD-KLKDVSDSIQAKYAKTQIKSVVVDFS 114
           ALVTG   GIG   A  LA  G +L +  R  D +L      ++A   +      V+ F 
Sbjct: 5   ALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVE------VIFFP 58

Query: 115 GDLDEG------VERIKEAIEGLDVGVLINNVGISYPYARFFHEV-----DQVLLKNLIK 163
            D+ +       ++  + A   +D   L+NN G+         ++     D+VL      
Sbjct: 59  ADVADLSAHEAMLDAAQAAWGRID--CLVNNAGVGVKVRGDLLDLTPESFDRVL-----A 111

Query: 164 VNVEGTTKVTQAVLPGMLKRKK 185
           +N+ G   +TQAV   ML + +
Sbjct: 112 INLRGPFFLTQAVAKRMLAQPE 133

Length = 256

>gnl|CDD|187616 cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 9/143 (6%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVV 111
           G  ALVTG + GIGK+ A +LA  G N+V+  R   D  ++V + I+A   K    +V  
Sbjct: 3   GKVALVTGASSGIGKAIAIRLATAGANVVVNYRSKEDAAEEVVEEIKAVGGKAI--AVQA 60

Query: 112 DFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
           D S   D+    +   +    LD  +L+NN G+    +   HE+       +I VN+ G 
Sbjct: 61  DVSKEEDVVALFQSAIKEFGTLD--ILVNNAGLQGDAS--SHEMTLEDWNKVIDVNLTGQ 116

Query: 170 TKVTQAVLPGMLKRKKGLSMLNI 192
               +  +    K K    ++N+
Sbjct: 117 FLCAREAIKRFRKSKIKGKIINM 139

GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253

>gnl|CDD|181077 PRK07677, PRK07677, short chain dehydrogenase; Provisional

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 33/141 (23%), Positives = 70/141 (49%), Gaps = 14/141 (9%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           ++TG + G+GK+ A + A+ G N+V+ GR  +KL++    I+      Q+ +V +D    
Sbjct: 5   IITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQ--FPGQVLTVQMDVRN- 61

Query: 117 LDEGVER-IKEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLL---KNLIKVNVEGTTK 171
             E V++ +++  E    +  LINN         F    + + +    ++I + + GT  
Sbjct: 62  -PEDVQKMVEQIDEKFGRIDALINNAA-----GNFICPAEDLSVNGWNSVIDIVLNGTFY 115

Query: 172 VTQAVLPGMLKRKKGLSMLNI 192
            +QAV    +++    +++N+
Sbjct: 116 CSQAVGKYWIEKGIKGNIINM 136

Length = 252

>gnl|CDD|235712 PRK06138, PRK06138, short chain dehydrogenase; Provisional

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 10/151 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A+VTG   GIG++ A   A+ G  +V+  R+ +  + V+ +I    A  +  +   D   
Sbjct: 8   AIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA---AGGRAFARQGDVGS 64

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              ++  V+ +      LD  VL+NN G            D+     +++VNV G     
Sbjct: 65  AEAVEALVDFVAARWGRLD--VLVNNAGFG--CGGTVVTTDEADWDAVMRVNVGGVFLWA 120

Query: 174 QAVLPGMLKRKKGLSMLNIGKAELMCSVRFH 204
           +  +P M ++  G S++N      +   R  
Sbjct: 121 KYAIPIMQRQGGG-SIVNTASQLALAGGRGR 150

Length = 252

>gnl|CDD|187618 cd05360, SDR_c3, classical (c) SDR, subgroup 3

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 9/141 (6%)

Query: 58  VTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL 117
           +TG + GIG++ A   A+ G  +VL  R+ + L +++  +  +    +  +VV D   D 
Sbjct: 5   ITGASSGIGRATALAFAERGAKVVLAARSAEALHELAREV--RELGGEAIAVVADV-ADA 61

Query: 118 DEGVERIKE-AIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
            + VER  + A+E    +   +NN G++  + R F +V     + +  VN  G    T A
Sbjct: 62  AQ-VERAADTAVERFGRIDTWVNNAGVAV-FGR-FEDVTPEEFRRVFDVNYLGHVYGTLA 118

Query: 176 VLPGMLKRKKGLSMLNIGKAE 196
            LP + +R  G +++N+G   
Sbjct: 119 ALPHLRRRGGG-ALINVGSLL 138

These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 233

>gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 19/160 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG   GIG + A +L + G  + +V  N +  +  +D +     K    +V  D S 
Sbjct: 5   ALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAI--AVKADVS- 61

Query: 116 DLDEGVERIKEAIEGL-DVGVLINNVGI--SYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
           D D+    +++ ++   D+ V++NN G+  + P      E        +  +NV G    
Sbjct: 62  DRDQVFAAVRQVVDTFGDLNVVVNNAGVAPTTPIETITEEQ----FDKVYNINVGGVIWG 117

Query: 173 TQAVLPGMLKRKKGLSMLN-------IGKAELM--CSVRF 203
            QA      K   G  ++N       +G  EL    S +F
Sbjct: 118 IQAAQEAFKKLGHGGKIINATSQAGVVGNPELAVYSSTKF 157

Length = 256

>gnl|CDD|187623 cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 6/139 (4%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKT-QIKSVVVDFS 114
           A+VTG   GIGK+ A  LAK G ++V+     +  + V+ +IQ    +   ++  V    
Sbjct: 2   AIVTGGAAGIGKAIAGTLAKAGASVVIADLKSEGAEAVAAAIQQAGGQAIGLECNVTSEQ 61

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
            DL+  V+       G+   +L+NN G   P   F   + +   +   K+N+    +++Q
Sbjct: 62  -DLEAVVKATVSQFGGIT--ILVNNAGGGGPK-PFDMPMTEEDFEWAFKLNLFSAFRLSQ 117

Query: 175 AVLPGMLKRKKGLSMLNIG 193
              P M K   G ++LNI 
Sbjct: 118 LCAPHMQKAGGG-AILNIS 135

This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242

>gnl|CDD|187640 cd08935, mannonate_red_SDR_c, putative D-mannonate oxidoreductase, classical (c) SDR

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 21/152 (13%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKT-QIKSVVVDFS 114
           A++TG T  +G + A  LA+ G  +  +GRN +K   V+  I A   +   + + V+D  
Sbjct: 8   AVITGGTGVLGGAMARALAQAGAKVAALGRNQEKGDKVAKEITALGGRAIALAADVLDR- 66

Query: 115 GDLDEGVERIKEAIEGL--DVGVLINNVGISYPYA------------RFFHEVDQVLLKN 160
                 +ER +E I      V +LIN  G ++P A            + F ++D+   + 
Sbjct: 67  ----ASLERAREEIVAQFGTVDILINGAGGNHPDATTDPEHYEPETEQNFFDLDEEGWEF 122

Query: 161 LIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNI 192
           +  +N+ G+   +Q     ML++K G S++NI
Sbjct: 123 VFDLNLNGSFLPSQVFGKDMLEQKGG-SIINI 153

D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 271

>gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 9/154 (5%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVV 111
           G  ALVTG T G+G + A   A+ G   LV+ GRN +K +  +  ++A     +   V  
Sbjct: 6   GKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEA--LGAKAVFVQA 63

Query: 112 DFSGDLDEGVERIKEAIEGLD-VGVLINNVGISYPYAR-FFHEVDQVLLKNLIKVNVEGT 169
           D S D+++    +  A E    +  L+N  G++    R    +    L      VNV   
Sbjct: 64  DLS-DVEDCRRVVAAADEAFGRLDALVNAAGLT---DRGTILDTSPELFDRHFAVNVRAP 119

Query: 170 TKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF 203
             + Q  +  M +RK   +++NIG         F
Sbjct: 120 FFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQPF 153

Length = 260

>gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 14/144 (9%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVV 111
           G  ALVTG   G+G+  A  LA+ G ++V  GR  P + +   +++  ++      S+  
Sbjct: 5   GKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFL-----SLTA 59

Query: 112 DFS--GDLDEGVERIKEAIEGLDVGVLINNVG-ISYPYARFFHEVDQVLLKNLIKVNVEG 168
           D S    +   V+   E    +D  +L+NN G I    A  F E D     +++ VN++ 
Sbjct: 60  DLSDIEAIKALVDSAVEEFGHID--ILVNNAGIIRRADAEEFSEKD---WDDVMNVNLKS 114

Query: 169 TTKVTQAVLPGMLKRKKGLSMLNI 192
              +TQA     LK+ +G  ++NI
Sbjct: 115 VFFLTQAAAKHFLKQGRGGKIINI 138

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 248

>gnl|CDD|181136 PRK07825, PRK07825, short chain dehydrogenase; Provisional

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 16/133 (12%)

Query: 58  VTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI-QAKYAKTQIKSVVVD---F 113
           +TG   GIG + A  LA  G  + +   +    K+ +  +             V D   F
Sbjct: 10  ITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLD----VTDPASF 65

Query: 114 SGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
           +  LD  VE      +   + VL+NN G+  P   F  E D V  + L  VNV G    +
Sbjct: 66  AAFLDA-VEA-----DLGPIDVLVNNAGV-MPVGPFLDEPDAVTRRIL-DVNVYGVILGS 117

Query: 174 QAVLPGMLKRKKG 186
           +   P M+ R +G
Sbjct: 118 KLAAPRMVPRGRG 130

Length = 273

>gnl|CDD|236145 PRK08063, PRK08063, enoyl-(acyl carrier protein) reductase; Provisional

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           ALVTG + GIGK+ A +LA+ G ++ +   R+    ++ ++ I+A   K       V   
Sbjct: 7   ALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDV 66

Query: 115 GDLDEGVERIKEAIEGLDVGVLINN 139
             + E   +I E    LD  V +NN
Sbjct: 67  EKIKEMFAQIDEEFGRLD--VFVNN 89

Length = 250

>gnl|CDD|234422 TIGR03971, SDR_subfam_1, oxidoreductase, SDR family

 Score = 47.9 bits (114), Expect = 8e-07
 Identities = 31/152 (20%), Positives = 65/152 (42%), Gaps = 13/152 (8%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG--RNPDKLKDVSDSIQAKYAKT-----Q 105
           G  A +TG   G G++ A +LA  G +++ +              + +    +T      
Sbjct: 3   GKVAFITGAARGQGRAHAVRLAAEGADIIAIDLCAPLSDYPTYPLATREDLDETARLVEA 62

Query: 106 IKSVVVDFSGD---LDEGVERIKEAIEGLD-VGVLINNVGISYPYARFFHEVDQVLLKNL 161
           +   V+    D   L E    +++ +E    + V++ N G+   Y R   E+ +     +
Sbjct: 63  LGRKVLARKADVRDLAEVRAVVEDGVEQFGRLDVVVANAGVL-SYGRS-WELSEEQWDTV 120

Query: 162 IKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           + +N+ G  +  +AV+P M++R  G S++   
Sbjct: 121 LDINLTGVWRTCKAVVPHMIERGNGGSIIITS 152

Members of this protein subfamily are putative oxidoreductases belonging to the larger SDR family. Members of the present subfamily may occur several to a genome and are largely restricted to genomes that contain members of families TIGR03962, TIGR03967, and TIGR03969. Many members have been annotated by homology as carveol dehydrogenases. Length = 265

>gnl|CDD|187620 cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 17/132 (12%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           ALVTG + GIG++ A +LA+ G ++V+    +    ++V   I+A   K       +   
Sbjct: 6   ALVTGASRGIGRAIAKRLARDGASVVVNYASSKAAAEEVVAEIEAAGGK------AIAVQ 59

Query: 115 GDLD--EGVERIKEAIE----GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEG 168
            D+     V R+ +A E    G+D  +L+NN G+     +   E  +     +  VN +G
Sbjct: 60  ADVSDPSQVARLFDAAEKAFGGVD--ILVNNAGVMLK--KPIAETSEEEFDRMFTVNTKG 115

Query: 169 TTKVTQAVLPGM 180
              V Q     +
Sbjct: 116 AFFVLQEAAKRL 127

1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243

>gnl|CDD|187603 cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR

 Score = 47.8 bits (114), Expect = 8e-07
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 17/143 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI--QAKYAKTQIKSVVVDF 113
           A+VTG   G G+  A + A+ G  +V+   N D  + V+  I   A   +  +       
Sbjct: 8   AIVTGAGSGFGEGIARRFAQEGARVVIADINADGAERVAADIGEAAIAIQADVTK----- 62

Query: 114 SGDLDEGVERIKEAIEGLDVGVLINNVGISY---PYARFFHEVDQVLLKNLIKVNVEGTT 170
             D++  VE        LD  +L+NN GI++   P      EVD+     +  VNV+   
Sbjct: 63  RADVEAMVEAALSKFGRLD--ILVNNAGITHRNKPML----EVDEEEFDRVFAVNVKSIY 116

Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
              QA++P M ++  G  ++NI 
Sbjct: 117 LSAQALVPHMEEQGGG-VIINIA 138

This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 248

>gnl|CDD|237220 PRK12828, PRK12828, short chain dehydrogenase; Provisional

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 7/141 (4%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G    +TG   G+G++ A  LA  G  + L+GR    L      + A   +     +V  
Sbjct: 7   GKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDP 66

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
                   V+ +      LD   L+N  G  + +     + D      +  VNV+ T   
Sbjct: 67  --QAARRAVDEVNRQFGRLD--ALVNIAGA-FVWGT-IADGDADTWDRMYGVNVKTTLNA 120

Query: 173 TQAVLPGMLKRKKGLSMLNIG 193
           ++A LP +     G  ++NIG
Sbjct: 121 SKAALPALTASGGG-RIVNIG 140

Length = 239

>gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase; Provisional

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 22/139 (15%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           +VTG + GIG +   +L   G N+V    +    +   ++ Q  +  T + S     + +
Sbjct: 13  IVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQH--ENYQ--FVPTDVSS-----AEE 63

Query: 117 LDEGVERIKEAIEGLDVGVLINNVGISYPYARFF---------HEVDQVLLKNLIKVNVE 167
           ++  V  I E    +D   L+NN GI+ P  R           +E+++     +  +N +
Sbjct: 64  VNHTVAEIIEKFGRIDG--LVNNAGINIP--RLLVDEKDPAGKYELNEAAFDKMFNINQK 119

Query: 168 GTTKVTQAVLPGMLKRKKG 186
           G   ++QAV   M+K+  G
Sbjct: 120 GVFLMSQAVARQMVKQHDG 138

Length = 266

>gnl|CDD|233441 TIGR01500, sepiapter_red, sepiapterin reductase

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 8/106 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLN----LVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVV 111
            LVTG + G G++ A +LAK   +    LVL  RN + L+ +   I A+ +  ++  V +
Sbjct: 3   CLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSL 62

Query: 112 DFSG--DLDEGVERIKEAI--EGLDVGVLINNVGISYPYARFFHEV 153
           D      L++ ++ ++E    +GL   +LINN G     ++ F ++
Sbjct: 63  DLGAEAGLEQLLKALRELPRPKGLQRLLLINNAGTLGDVSKGFVDL 108

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. Length = 256

>gnl|CDD|187668 cd09808, DHRS-12_like_SDR_c-like, human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like SDRs

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG- 115
           L+TG   GIGK+ A  +AK G  + +V RN  + ++    I+ +     I   +VD S  
Sbjct: 5   LITGANSGIGKAAALAIAKRGGTVHMVCRNQTRAEEARKEIETESGNQNIFLHIVDMSDP 64

Query: 116 -DLDEGVERIKEAIEGLDVGVLINNVG 141
             + E VE  KE  EG  + VLINN G
Sbjct: 65  KQVWEFVEEFKE--EGKKLHVLINNAG 89

Classical SDR-like subgroup containing human DHRS-12/FLJ13639, the 36K protein of zebrafish CNS myelin, and related proteins. DHRS-12/FLJ13639 is expressed in neurons and oligodendrocytes in the human cerebral cortex. Proteins in this subgroup share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 255

>gnl|CDD|187647 cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG   GIG + A +LA  G  +V+   +P+  + V+   +A     +   V  D
Sbjct: 1   GKVALVTGGASGIGLAIAKRLAAEGAAVVVADIDPEIAEKVA---EAAQGGPRALGVQCD 57

Query: 113 FS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
            +    +    E+      GLD  ++++N GI+        E         + +N+ G  
Sbjct: 58  VTSEAQVQSAFEQAVLEFGGLD--IVVSNAGIATSSP--IAETSLEDWNRSMDINLTGHF 113

Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
            V++     M  +  G +++   
Sbjct: 114 LVSREAFRIMKSQGIGGNIVFNA 136

This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|237187 PRK12743, PRK12743, oxidoreductase; Provisional

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 37/139 (26%), Positives = 73/139 (52%), Gaps = 7/139 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNL-VLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           A+VT    GIGK+ A  LA+ G ++ +    + +  K+ ++ +++   + +I+   +D S
Sbjct: 5   AIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQ--LDLS 62

Query: 115 GDLDEGVERIKEAIEGLD-VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
            DL EG + + + I+ L  + VL+NN G        F ++D    + +  V+V+G    +
Sbjct: 63  -DLPEGAQALDKLIQRLGRIDVLVNNAGAM--TKAPFLDMDFDEWRKIFTVDVDGAFLCS 119

Query: 174 QAVLPGMLKRKKGLSMLNI 192
           Q     M+K+ +G  ++NI
Sbjct: 120 QIAARHMVKQGQGGRIINI 138

Length = 256

>gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 9/128 (7%)

Query: 55  WALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRN--PDKLKDVSDSIQAKYAKTQIKSV-V 110
             L+TG T G+G + A  LA  G  +LVLV R        ++   ++A  A+  + +  V
Sbjct: 2   TVLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAELVAELEALGAEVTVAACDV 61

Query: 111 VDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
            D    L   +  +  A+  LD   +++N G+         E+     + ++   V G  
Sbjct: 62  ADRD-ALAALLAALPAALGPLD--GVVHNAGVLDD--GPLEELTPERFERVLAPKVTGAW 116

Query: 171 KVTQAVLP 178
            + +    
Sbjct: 117 NLHELTRD 124

This family contains a wide variety of dehydrogenases. Length = 167

>gnl|CDD|183832 PRK12935, PRK12935, acetoacetyl-CoA reductase; Provisional

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 38/137 (27%), Positives = 72/137 (52%), Gaps = 9/137 (6%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKT--QIKSVV 110
           G  A+VTG   GIGK+    LA+ G  +V+   N +  K+ ++++  +  K    + +V 
Sbjct: 6   GKVAIVTGGAKGIGKAITVALAQEGAKVVI---NYNSSKEAAENLVNELGKEGHDVYAVQ 62

Query: 111 VDFSGDLDEGVERIKEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
            D S  +++    ++EA+     V +L+NN GI+    R F ++++   + +I VN+   
Sbjct: 63  ADVS-KVEDANRLVEEAVNHFGKVDILVNNAGITRD--RTFKKLNREDWERVIDVNLSSV 119

Query: 170 TKVTQAVLPGMLKRKKG 186
              T AVLP + + ++G
Sbjct: 120 FNTTSAVLPYITEAEEG 136

Length = 247

>gnl|CDD|237219 PRK12827, PRK12827, short chain dehydrogenase; Provisional

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 40/144 (27%), Positives = 78/144 (54%), Gaps = 12/144 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            L+TG + G+G++ A +LA  G +++++  +P + +  +D++ A       K++ + F  
Sbjct: 9   VLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAF-- 66

Query: 116 DLDEG------VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
           D+ +       ++   E    LD+  L+NN GI+   A  F E+      ++I VN++G 
Sbjct: 67  DVRDFAATRAALDAGVEEFGRLDI--LVNNAGIATDAA--FAELSIEEWDDVIDVNLDGF 122

Query: 170 TKVTQAVLPGMLKRKKGLSMLNIG 193
             VTQA LP M++ ++G  ++NI 
Sbjct: 123 FNVTQAALPPMIRARRGGRIVNIA 146

Length = 249

>gnl|CDD|187624 cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQ-AKYAKTQIKSVVVDFS 114
           A++TG   GIG++ A +LA  G N+VL   N ++      +IQ    A     +V  D +
Sbjct: 5   AIITGAAQGIGRAIAERLAADGFNIVLADLNLEEA--AKSTIQEISEAGYNAVAVGADVT 62

Query: 115 GDLDEGVERIKEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
            D D+    I +A+E      V++NN GI+         + +  LK +  VNV G     
Sbjct: 63  -DKDDVEALIDQAVEKFGSFDVMVNNAGIA--PITPLLTITEEDLKKVYAVNVFGVLFGI 119

Query: 174 QAVLPGMLKRKKGLSMLN 191
           QA      K   G  ++N
Sbjct: 120 QAAARQFKKLGHGGKIIN 137

2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|181298 PRK08219, PRK08219, short chain dehydrogenase; Provisional

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 15/124 (12%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           AL+TG + GIG + A +LA T   L+L GR  ++L +++  +               F  
Sbjct: 6   ALITGASRGIGAAIARELAPTH-TLLLGGRPAERLDELAAEL----------PGATPFPV 54

Query: 116 DLDEGVERIKEAIEGLD-VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
           DL +  E I  A+E L  + VL++N G++         VD+   +  ++VNV    ++T+
Sbjct: 55  DLTDP-EAIAAAVEQLGRLDVLVHNAGVADLGPVAESTVDE--WRATLEVNVVAPAELTR 111

Query: 175 AVLP 178
            +LP
Sbjct: 112 LLLP 115

Length = 227

>gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 19/143 (13%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G   LVTG + GIG++ A  LA+ G  +V   RN   L  ++        +T  + + +D
Sbjct: 9   GKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLA-------GETGCEPLRLD 61

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISY---PYARFFHEVDQVLLKNLIKVNVEGT 169
                D  +     A    D   L+N  GI+             D+V+      VN  G 
Sbjct: 62  VGD--DAAIRAALAAAGAFD--GLVNCAGIASLESALDMTAEGFDRVM-----AVNARGA 112

Query: 170 TKVTQAVLPGMLKRKKGLSMLNI 192
             V + V   M+   +G S++N+
Sbjct: 113 ALVARHVARAMIAAGRGGSIVNV 135

Length = 245

>gnl|CDD|187592 cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 12/138 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            +VTG   GIG++ A  L + G  ++ +      L +  D ++           V D + 
Sbjct: 1   VIVTGAAQGIGRAVARHLLQAGATVIALDLPFVLLLEYGDPLRLT------PLDVAD-AA 53

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
            + E   R+      +D   L+N  G+  P A     +     +    VNV G   + QA
Sbjct: 54  AVREVCSRLLAEHGPID--ALVNCAGVLRPGA--TDPLSTEDWEQTFAVNVTGVFNLLQA 109

Query: 176 VLPGMLKRKKGLSMLNIG 193
           V P M  R+ G +++ + 
Sbjct: 110 VAPHMKDRRTG-AIVTVA 126

2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244

>gnl|CDD|181334 PRK08263, PRK08263, short chain dehydrogenase; Provisional

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 14/143 (9%)

Query: 55  WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           W  +TG + G G+++     + G  +V   R+   L D+++    +     +   V D +
Sbjct: 6   W-FITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALD--VTDRA 62

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARF--FHEVDQVLLKNLIKVNVEGTTKV 172
                 VE   E    LD+  ++NN G    Y  F    EV +   +  I  N  G   V
Sbjct: 63  AVFA-AVETAVEHFGRLDI--VVNNAG----YGLFGMIEEVTESEARAQIDTNFFGALWV 115

Query: 173 TQAVLPGMLKRKKG--LSMLNIG 193
           TQAVLP + +++ G  + + +IG
Sbjct: 116 TQAVLPYLREQRSGHIIQISSIG 138

Length = 275

>gnl|CDD|187591 cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases, including levodione reductase, classical (c) SDRs

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 13/136 (9%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           L+TG   G+G + A +LAK G  L LV  N + L+    ++       ++  +  D S +
Sbjct: 7   LITGGGSGLGLATAVRLAKEGAKLSLVDLNEEGLEAAKAALLEIAPDAEVLLIKADVSDE 66

Query: 117 ------LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
                 +D  VE+    I+G       NN GI         +        ++ +N+ G  
Sbjct: 67  AQVEAYVDATVEQFGR-IDG-----FFNNAGIEGKQN-LTEDFGADEFDKVVSINLRGVF 119

Query: 171 KVTQAVLPGMLKRKKG 186
              + VL  M ++  G
Sbjct: 120 YGLEKVLKVMREQGSG 135

Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|236116 PRK07856, PRK07856, short chain dehydrogenase; Provisional

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 24/147 (16%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G   LVTG T GIG   A      G  +V+ GR      +  D   A++    ++     
Sbjct: 6   GRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAP---ETVDGRPAEFHAADVRD---- 58

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARF------FHEVDQVLLKNLIKVNV 166
               +   V+ I E    LD  VL+NN G S PYA        FHE        ++++N+
Sbjct: 59  -PDQVAALVDAIVERHGRLD--VLVNNAGGS-PYALAAEASPRFHE-------KIVELNL 107

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
                V QA    M ++  G S++NIG
Sbjct: 108 LAPLLVAQAANAVMQQQPGGGSIVNIG 134

Length = 252

>gnl|CDD|187646 cd08942, RhlG_SDR_c, RhlG and related beta-ketoacyl reductases, classical (c) SDRs

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 32/156 (20%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G   LVTG + GIG+  A    + G  +++  R  +   D ++ + + Y +    ++  D
Sbjct: 6   GKIVLVTGGSRGIGRMIAQGFLEAGARVIISARKAEACADAAEEL-SAYGECI--AIPAD 62

Query: 113 FSGDLDEGVE----RIKEAIEGLDVGVLINNVGIS-------YPYARFFHEVDQVLLKNL 161
            S   +EG+E    R+ E  + LD  VL+NN G +       +P + +    D+V+    
Sbjct: 63  LSS--EEGIEALVARVAERSDRLD--VLVNNAGATWGAPLEAFPESGW----DKVM---- 110

Query: 162 IKVNVEGTTKVTQAVLPGMLKRKKG----LSMLNIG 193
             +NV+    +TQA+LP +L+          ++NIG
Sbjct: 111 -DINVKSVFFLTQALLP-LLRAAATAENPARVINIG 144

Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|187613 cd05355, SDR_c1, classical (c) SDR, subgroup 1

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 20/144 (13%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV--GRNPDKLKDVSDSIQAKYAKTQIKSVVVDF 113
           AL+TG   GIG++ A   A+ G ++ +       D  ++    I+ +  K       +  
Sbjct: 29  ALITGGDSGIGRAVAIAFAREGADVAINYLPEEEDDAEETKKLIEEEGRK------CLLI 82

Query: 114 SGDLD------EGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVE 167
            GDL       + V+ + +    LD  +L+NN    +P      ++    L+   + N+ 
Sbjct: 83  PGDLGDESFCRDLVKEVVKEFGKLD--ILVNNAAYQHP-QESIEDITTEQLEKTFRTNIF 139

Query: 168 GTTKVTQAVLPGMLKRKKGLSMLN 191
               +T+A LP +   KKG S++N
Sbjct: 140 SMFYLTKAALPHL---KKGSSIIN 160

These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 270

>gnl|CDD|187590 cd05329, TR_SDR_c, tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 10/153 (6%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG T GIG +   +LA  G  +    RN  +L +     + K    +++  V D
Sbjct: 6   GKTALVTGGTKGIGYAIVEELAGLGAEVYTCARNQKELDECLTEWREK--GFKVEGSVCD 63

Query: 113 FSGDLDEGVERIKEAIE---GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
            S       + + + +    G  + +L+NN G +       +  +      ++  N E  
Sbjct: 64  VS--SRSERQELMDTVASHFGGKLNILVNNAGTNIRKEAKDYTEED--YSLIMSTNFEAA 119

Query: 170 TKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR 202
             +++   P +LK     +++ I     + +V 
Sbjct: 120 YHLSRLAHP-LLKASGNGNIVFISSVAGVIAVP 151

This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 251

>gnl|CDD|180604 PRK06523, PRK06523, short chain dehydrogenase; Provisional

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 23/137 (16%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           ALVTG T GIG +   +L + G  +V   R+ PD L +  + + A               
Sbjct: 12  ALVTGGTKGIGAATVARLLEAGARVVTTARSRPDDLPEGVEFVAA--------------- 56

Query: 115 GDLD--EGVERI-KEAIEGL-DVGVLINNVGISYPYARFFHEV-DQVLLKNLIKVNVEGT 169
            DL   EG   + +  +E L  V +L++ +G S   A  F  + D+     L  +N+   
Sbjct: 57  -DLTTAEGCAAVARAVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDEL-NLNLLAA 114

Query: 170 TKVTQAVLPGMLKRKKG 186
            ++ +A+LPGM+ R  G
Sbjct: 115 VRLDRALLPGMIARGSG 131

Length = 260

>gnl|CDD|235853 PRK06701, PRK06701, short chain dehydrogenase; Provisional

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 17/147 (11%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  AL+TG   GIG++ A   AK G ++ +V  +    +D +++ Q    +   K +++ 
Sbjct: 46  GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEH--EDANETKQRVEKEGV-KCLLI- 101

Query: 113 FSGDL------DEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNV 166
             GD+       + VE     +  LD  +L+NN    YP         + L K   K N+
Sbjct: 102 -PGDVSDEAFCKDAVEETVRELGRLD--ILVNNAAFQYPQQSLEDITAEQLDKTF-KTNI 157

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
                +T+A LP +   K+G +++N G
Sbjct: 158 YSYFHMTKAALPHL---KQGSAIINTG 181

Length = 290

>gnl|CDD|235627 PRK05854, PRK05854, short chain dehydrogenase; Provisional

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 8/100 (8%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKY--AKTQIKSVV 110
           G  A+VTG +DG+G   A +LA  G  ++L  RN  K +    +I+     AK  +++  
Sbjct: 14  GKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRA-- 71

Query: 111 VDFSGDLDEGVERIKEAI--EGLDVGVLINNVGISYPYAR 148
           +D S  L   V  + E +  EG  + +LINN G+  P  R
Sbjct: 72  LDLS-SLAS-VAALGEQLRAEGRPIHLLINNAGVMTPPER 109

Length = 313

>gnl|CDD|187634 cd08929, SDR_c4, classical (c) SDR, subgroup 4

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 16/142 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG + GIG++ A  L   G  + +  R+      ++ +   +     +  +  D   
Sbjct: 3   ALVTGASRGIGEATARLLHAEGYRVGICARDE---ARLAAAAAQELEG--VLGLAGDVRD 57

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINN--VGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
             D+   V+ ++EA  GLD   L+NN  VG+  P      E +  L   L          
Sbjct: 58  EADVRRAVDAMEEAFGGLD--ALVNNAGVGVMKPVEELTPE-EWRL--VLDTNLTGAFYC 112

Query: 172 VTQAVLPGMLKRKKGLSMLNIG 193
           + +A     L R+ G +++N+G
Sbjct: 113 IHKAAPA--LLRRGGGTIVNVG 132

This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 226

>gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + GIG++ A  LA+ G ++++  R  D  + V+D+I A   K +  +  + 
Sbjct: 8   GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIG 67

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVL--LKNLIKVNVEG 168
               +D     I+E    LD  +L+NN   + PY  F H +D  L   +  + VN+ G
Sbjct: 68  EMEQIDALFAHIRERHGRLD--ILVNNAAAN-PY--FGHILDTDLGAFQKTVDVNIRG 120

Length = 252

>gnl|CDD|180458 PRK06194, PRK06194, hypothetical protein; Provisional

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  A++TG   G G +FA   A  G+ LVL     D L      ++A+ A  ++  V  D
Sbjct: 6   GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA--EVLGVRTD 63

Query: 113 FSGDLDEGVERI-KEAIEGL-DVGVLINNVGI 142
            S      VE +   A+E    V +L NN G+
Sbjct: 64  VS--DAAQVEALADAALERFGAVHLLFNNAGV 93

Length = 287

>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 15/141 (10%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
             +TG   GIG++ A + A  G  L+++ R+ +  K +++++  ++      SV  D + 
Sbjct: 272 VAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHL-----SVQADIT- 325

Query: 116 DLDEG-VERIKEAIEGL--DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
             DE  VE     I+     + VL+NN GI+  +     +  +     +  VN+ G    
Sbjct: 326 --DEAAVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAED-FTRVYDVNLSGAFAC 382

Query: 173 TQAVLPGMLKRKKGLSMLNIG 193
            +A    M    +G  ++N+G
Sbjct: 383 ARAAARLM---SQGGVIVNLG 400

Length = 520

>gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 10/98 (10%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  A+VTG   G+G   A  LA  G ++VL  RN DK K  +  I A      +    +D
Sbjct: 16  GRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELD 75

Query: 113 FSGDLDEGVERIKEAIEGLD-----VGVLINNVGISYP 145
            +  L      ++ A + L      + +LINN G+ Y 
Sbjct: 76  LT-SLAS----VRAAADALRAAYPRIDLLINNAGVMYT 108

Length = 306

>gnl|CDD|187666 cd09806, type1_17beta-HSD-like_SDR_c, human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 8/133 (6%)

Query: 57  LVTGPTDGIGKSFAFQLA---KTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF 113
           L+TG + GIG   A +LA        +    R+  K   + ++  A    T ++++ +D 
Sbjct: 4   LITGCSSGIGLHLAVRLASDPSKRFKVYATMRDLKKKGRLWEAAGALAGGT-LETLQLDV 62

Query: 114 SGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
                + V    E +    V VL+ N G+           D +   ++  VNV GT ++ 
Sbjct: 63  CDS--KSVAAAVERVTERHVDVLVCNAGVGLLGPLEALSEDAM--ASVFDVNVFGTVRML 118

Query: 174 QAVLPGMLKRKKG 186
           QA LP M +R  G
Sbjct: 119 QAFLPDMKRRGSG 131

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical SDR subgroup includes human type 1 17beta-HSD, human retinol dehydrogenase 8, zebrafish photoreceptor associated retinol dehydrogenase type 2, and a chicken ovary-specific 17beta-hydroxysteroid dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258

>gnl|CDD|180993 PRK07478, PRK07478, short chain dehydrogenase; Provisional

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 15/137 (10%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A++TG + GIG++ A   A+ G  +V+  R   +L  +   I+A+  +       V  +G
Sbjct: 9   AIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGE------AVALAG 62

Query: 116 DL-DEG-----VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
           D+ DE      V    E   GLD+    NN G          E+     +  +  N+   
Sbjct: 63  DVRDEAYAKALVALAVERFGGLDIA--FNNAGTLGEMGP-VAEMSLEGWRETLATNLTSA 119

Query: 170 TKVTQAVLPGMLKRKKG 186
               +  +P ML R  G
Sbjct: 120 FLGAKHQIPAMLARGGG 136

Length = 254

>gnl|CDD|236209 PRK08265, PRK08265, short chain dehydrogenase; Provisional

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 28/150 (18%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI--QAKYAKTQIKSVV 110
           G  A+VTG    IG + A  L   G  + +V  + D    V+ S+  +A++  T I    
Sbjct: 6   GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITD-- 63

Query: 111 VDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVL-------LKNLIK 163
                 ++  V  +      +D  +L+N    +Y        +D  L       L  L  
Sbjct: 64  ---DAAIERAVATVVARFGRVD--ILVNL-ACTY--------LDDGLASSRADWLAAL-D 108

Query: 164 VNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           VN+     + QA  P + +   G +++N  
Sbjct: 109 VNLVSAAMLAQAAHPHLARG--GGAIVNFT 136

Length = 261

>gnl|CDD|187617 cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVVDFS 114
           ALVTG + GIGK+ A +LA+ G ++V+  R       +V+  I+    K  +    V   
Sbjct: 1   ALVTGGSRGIGKAIALRLAERGADVVINYRKSKDAAAEVAAEIEELGGKAVVVRADVSQP 60

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
            D++E    +KE    LD  VL++N        R   E+        +  N++      Q
Sbjct: 61  QDVEEMFAAVKERFGRLD--VLVSNAAAG--AFRPLSELTPAHWDAKMNTNLKALVHCAQ 116

Query: 175 AVLPGMLKRKKG 186
                M +R  G
Sbjct: 117 QAAKLMRERGGG 128

This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242

>gnl|CDD|183718 PRK12746, PRK12746, short chain dehydrogenase; Provisional

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 47  KNLRKYGSWALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDSIQAKYAKTQ 105
           KNL   G  ALVTG + GIG++ A +LA  G L  +  GRN     +    I++   K  
Sbjct: 2   KNLD--GKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAF 59

Query: 106 IKSVVVDFSGDLDEGVERIKEAIE----GLDVGVLINNVGISYPYARFFHEVDQVLLKNL 161
           +    ++    + + VE++K  ++      ++ +L+NN GI            + +   +
Sbjct: 60  LIEADLNSIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGT--IENTTEEIFDEI 117

Query: 162 IKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAEL 197
           + VN++    + Q  LP  L R +G  ++NI  AE+
Sbjct: 118 MAVNIKAPFFLIQQTLP--LLRAEG-RVINISSAEV 150

Length = 254

>gnl|CDD|235545 PRK05650, PRK05650, short chain dehydrogenase; Provisional

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           ++TG   G+G++ A + A+ G  L L   N +  ++    ++        +   V     
Sbjct: 4   MITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQ 63

Query: 117 LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAV 176
           L    +  +E   G+D  V++NN G++     FF E+        I +N+ G  K  +A 
Sbjct: 64  LTALAQACEEKWGGID--VIVNNAGVA--SGGFFEELSLEDWDWQIAINLMGVVKGCKAF 119

Query: 177 LPGMLKRKKGLSMLNIGK-AELM 198
           LP + KR+K   ++NI   A LM
Sbjct: 120 LP-LFKRQKSGRIVNIASMAGLM 141

Length = 270

>gnl|CDD|180761 PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 20/149 (13%)

Query: 52  YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLV--GRNPDKLKDVSDSIQAKYAKTQIKSV 109
            G  A+VTG   G+G+ +A  LAK G ++++   G N D+ + + +    K        V
Sbjct: 14  DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVT-----FV 68

Query: 110 VVDFSGDLDEGVERI-KEAIEGLD-VGVLINNVGI--SYPYARFFHE-VDQVLLKNLIKV 164
            VD +    E  E++ KEA+E    + +L+NN G     P   +  E  + V     + +
Sbjct: 69  QVDLTK--PESAEKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAV-----MDI 121

Query: 165 NVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           N+     ++QAV   M K+  G  ++NI 
Sbjct: 122 NLNSVYHLSQAVAKVMAKQGSG-KIINIA 149

Length = 258

>gnl|CDD|235816 PRK06500, PRK06500, short chain dehydrogenase; Provisional

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 19/135 (14%)

Query: 50  RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKS- 108
           R  G  AL+TG T GIG   A Q    G  + + GR+P  L         + A+ ++   
Sbjct: 3   RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASL---------EAARAELGES 53

Query: 109 --VVVDFSGDLD---EGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIK 163
             V+   +GD+       + + EA   LD  V I N G++        + D+ +      
Sbjct: 54  ALVIRADAGDVAAQKALAQALAEAFGRLDA-VFI-NAGVA--KFAPLEDWDEAMFDRSFN 109

Query: 164 VNVEGTTKVTQAVLP 178
            NV+G   + QA+LP
Sbjct: 110 TNVKGPYFLIQALLP 124

Length = 249

>gnl|CDD|187641 cd08936, CR_SDR_c, Porcine peroxisomal carbonyl reductase like, classical (c) SDR

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 3/131 (2%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVT  TDGIG + A +LA+ G ++V+  R    +     ++Q +          V  + 
Sbjct: 13  ALVTASTDGIGLAIARRLAQDGAHVVVSSRKQQNVDRAVATLQGEGLSVTGTVCHVGKAE 72

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           D +  V        G+D  +L++N  ++  +       ++V  K L  VNV+ T  +T+A
Sbjct: 73  DRERLVATAVNLHGGVD--ILVSNAAVNPFFGNILDSTEEVWDKIL-DVNVKATALMTKA 129

Query: 176 VLPGMLKRKKG 186
           V+P M KR  G
Sbjct: 130 VVPEMEKRGGG 140

This subgroup contains porcine peroxisomal carbonyl reductase and similar proteins. The porcine enzyme efficiently reduces retinals. This subgroup also includes human dehydrogenase/reductase (SDR family) member 4 (DHRS4), and human DHRS4L1. DHRS4 is a peroxisomal enzyme with 3beta-hydroxysteroid dehydrogenase activity; it catalyzes the reduction of 3-keto-C19/C21-steroids into 3beta-hydroxysteroids more efficiently than it does the retinal reduction. The human DHRS4 gene cluster contains DHRS4, DHRS4L2 and DHRS4L1. DHRS4L2 and DHRS4L1 are paralogs of DHRS4, DHRS4L2 being the most recent member. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256

>gnl|CDD|181517 PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 16/147 (10%)

Query: 55  WALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF 113
             LVTG + G+G + A   A+ G  +V+   ++ D  + ++D +  +     +++ V D 
Sbjct: 7   TVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELGDR--AIALQADVTDR 64

Query: 114 SGDLDEGVER-IKEAIE--GLDVGVLINNVGISY---PYAR-FFHEVDQVLLKNLIKVNV 166
                E V+     A E  G  +  ++NN    +     AR    ++     +  ++ +V
Sbjct: 65  -----EQVQAMFATATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSV 119

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           +G     QA LPGM ++  G  ++NIG
Sbjct: 120 KGALNTIQAALPGMREQGFG-RIINIG 145

Length = 253

>gnl|CDD|133446 cd01078, NAD_bind_H4MPT_DH, NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  A+V G T  +G+  A  LA+ G  +VLVGR+ ++ +  +DS++A++        V  
Sbjct: 28  GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARF-----GEGVGA 82

Query: 113 FSGDLDEGVERIKEAIEGLDV 133
                D    R   AI+G DV
Sbjct: 83  VETSDDA--ARA-AAIKGADV 100

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 194

>gnl|CDD|187621 cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH), classical (c) SDR

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 9/141 (6%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQ-AKYAKTQIKSVVV 111
           G  AL+TG   GIG++FA    + G  + +   N +  +  +  I  A  A   I   V 
Sbjct: 3   GKTALITGSARGIGRAFAQAYVREGARVAIADINLEAARATAAEIGPAACA---ISLDVT 59

Query: 112 DFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           D    +D  V  + +    +D  +L+NN  + +  A       +     L  +NV GT  
Sbjct: 60  D-QASIDRCVAALVDRWGSID--ILVNNAAL-FDLAPIVDITRES-YDRLFAINVSGTLF 114

Query: 172 VTQAVLPGMLKRKKGLSMLNI 192
           + QAV   M+ + +G  ++N+
Sbjct: 115 MMQAVARAMIAQGRGGKIINM 135

This bacterial subgroup includes Rhodobacter sphaeroides SDH, and other SDHs. SDH preferentially interconverts D-sorbitol (D-glucitol) and D-fructose, but also interconverts L-iditol/L-sorbose and galactitol/D-tagatose. SDH is NAD-dependent and is a dimeric member of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 254

>gnl|CDD|235713 PRK06139, PRK06139, short chain dehydrogenase; Provisional

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 18/144 (12%)

Query: 58  VTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL 117
           +TG + GIG++ A   A+ G  LVL  R+ + L+ V++  +A  A  ++  V  D + D 
Sbjct: 12  ITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA--EVLVVPTDVT-DA 68

Query: 118 DEGVERIKEAIE-GLDVGVLINNVGISYPYARFFHEV-----DQVLLKNLIKVNVEGTTK 171
           D+      +A   G  + V +NNVG+       F E      +QV+  NLI     G  +
Sbjct: 69  DQVKALATQAASFGGRIDVWVNNVGVGAVGR--FEETPIEAHEQVIQTNLI-----GYMR 121

Query: 172 VTQAVLPGMLKRKKG--LSMLNIG 193
              A LP   K+  G  ++M+++G
Sbjct: 122 DAHAALPIFKKQGHGIFINMISLG 145

Length = 330

>gnl|CDD|169556 PRK08703, PRK08703, short chain dehydrogenase; Provisional

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 20/148 (13%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           LVTG + G+G+  A   A  G  ++LV R+  KL+ V D+I       +  ++  D    
Sbjct: 10  LVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEA-GHPEPFAIRFDLMSA 68

Query: 117 LDEGVER----IKEAIEG-LDVGVLINNVGISYPYARFFH---EVDQVLLK--NLIKVNV 166
            ++  E+    I EA +G LD        GI +    F+       Q + +  N  ++N 
Sbjct: 69  EEKEFEQFAATIAEATQGKLD--------GIVHCAGYFYALSPLDFQTVAEWVNQYRINT 120

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIGK 194
                +T+A+ P +LK+    S++ +G+
Sbjct: 121 VAPMGLTRALFP-LLKQSPDASVIFVGE 147

Length = 239

>gnl|CDD|171820 PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 37/144 (25%), Positives = 71/144 (49%), Gaps = 16/144 (11%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK----DVSDSIQAKYAKTQIKS 108
           G  ALVTG + GIG+  A  L   G  + L G   +KL+    ++ + ++   A    + 
Sbjct: 6   GRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRD 65

Query: 109 VVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEG 168
            V           ++ +  +EG+D  +L+NN GI+     F    D+    ++++VN+  
Sbjct: 66  EVKALG-------QKAEADLEGVD--ILVNNAGITKD-GLFVRMSDED-WDSVLEVNLTA 114

Query: 169 TTKVTQAVLPGMLKRKKGLSMLNI 192
           T ++T+ +   M++R+ G  ++NI
Sbjct: 115 TFRLTRELTHPMMRRRYG-RIINI 137

Length = 245

>gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A+VTG + GIG +    L + G ++ + GR+ ++L      ++ K+   ++ +   D   
Sbjct: 11  AVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDV-- 68

Query: 116 DLDEG-VERIKEAIE----GLDVGVLINNVGISY 144
            LDE  V     A+E    G+D  +L+NN G   
Sbjct: 69  -LDEADVAAFAAAVEARFGGVD--MLVNNAGQGR 99

Length = 265

>gnl|CDD|187648 cd08944, SDR_c12, classical (c) SDR, subgroup 12

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 11/142 (7%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  A+VTG   GIG + A +LA+ G  +V+   +    + V   I          ++ VD
Sbjct: 3   GKVAIVTGAGAGIGAACAARLAREGARVVVADIDGGAAQAVVAQIAGGAL-----ALRVD 57

Query: 113 FSG--DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
            +    +    ER  E   GLD  +L+NN G  +       + D  +    + +N+ GT 
Sbjct: 58  VTDEQQVAALFERAVEEFGGLD--LLVNNAGAMH-LTPAIIDTDLAVWDQTMAINLRGTF 114

Query: 171 KVTQAVLPGMLKRKKGLSMLNI 192
              +   P M+ R  G S++N+
Sbjct: 115 LCCRHAAPRMIARGGG-SIVNL 135

These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 246

>gnl|CDD|180413 PRK06128, PRK06128, oxidoreductase; Provisional

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 16/150 (10%)

Query: 50  RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSV 109
           R  G  AL+TG   GIG++ A   A+ G ++ L    P++ +D ++ +Q   A+ +    
Sbjct: 52  RLQGRKALITGADSGIGRATAIAFAREGADIAL-NYLPEEEQDAAEVVQLIQAEGR---K 107

Query: 110 VVDFSGDL-DEG-----VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIK 163
            V   GDL DE      VER  + + GLD  +L+N  G      +   ++         K
Sbjct: 108 AVALPGDLKDEAFCRQLVERAVKELGGLD--ILVNIAG-KQTAVKDIADITTEQFDATFK 164

Query: 164 VNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
            NV     + +A +P +     G S++N G
Sbjct: 165 TNVYAMFWLCKAAIPHL---PPGASIINTG 191

Length = 300

>gnl|CDD|236190 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 32/150 (21%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAK-----TGLNLVLVGRNPDKLK----DVSDSIQAKYAK 103
           G    VTG   GIG + A    +      G +   + +          DVSD+       
Sbjct: 8   GKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFLTQEDYPFATFVLDVSDAAA----- 62

Query: 104 TQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIK 163
                        + +  +R+      LD  VL+N  GI    A     +     +    
Sbjct: 63  -------------VAQVCQRLLAETGPLD--VLVNAAGILRMGA--TDSLSDEDWQQTFA 105

Query: 164 VNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           VN  G   + +AV+P   +++ G +++ +G
Sbjct: 106 VNAGGAFNLFRAVMPQFRRQRSG-AIVTVG 134

Length = 252

>gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 20/122 (16%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A+V G    +G      LA+ G  + +   N +K  +V+  I A+Y +        D + 
Sbjct: 5   AVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS 64

Query: 116 DLDEGVERIKEAIEGL--DVGVLINNVGI-------SYPYARFFHEVDQVLLKNLIKVNV 166
             ++ V  +   ++ +   V +L+ N GI        +    F            ++VN+
Sbjct: 65  --EQSVLALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDF---------DRSLQVNL 113

Query: 167 EG 168
            G
Sbjct: 114 VG 115

Length = 259

>gnl|CDD|131680 TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 14/95 (14%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A VTG   GIG+  A +LA  G ++VL   N +  + V+  I  ++   +  ++ +D + 
Sbjct: 417 AFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVT- 475

Query: 116 DLDEGVERIKEAIE-------GLDVGVLINNVGIS 143
             DE  + +K A         G+D  +++NN GI+
Sbjct: 476 --DE--QAVKAAFADVALAYGGVD--IVVNNAGIA 504

Length = 676

>gnl|CDD|171821 PRK12937, PRK12937, short chain dehydrogenase; Provisional

 Score = 41.7 bits (98), Expect = 9e-05
 Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 15/131 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           A+VTG + GIG + A +LA  G  + +    +     ++   I+A  A  +  +V  D +
Sbjct: 8   AIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEA--AGGRAIAVQADVA 65

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARFFHEV-DQVLLKNLIKVNVEGT 169
               +    +  + A   +D  VL+NN G+      A F  E  D+      I  N+ G 
Sbjct: 66  DAAAVTRLFDAAETAFGRID--VLVNNAGVMPLGTIADFDLEDFDRT-----IATNLRGA 118

Query: 170 TKVTQAVLPGM 180
             V +     +
Sbjct: 119 FVVLREAARHL 129

Length = 245

>gnl|CDD|187587 cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 10/137 (7%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI---QAKYAKTQIKSV 109
           G  A++TG   GIG++ A   AK G  +V+   + D  + V+  +      +    + +V
Sbjct: 4   GKVAIITGGASGIGEATARLFAKHGARVVIADIDDDAGQAVAAELGDPDISFVHCDV-TV 62

Query: 110 VVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
             D    +D  V R       LD+  + NN G+         E      + ++ VNV G 
Sbjct: 63  EADVRAAVDTAVARFGR----LDI--MFNNAGVLGAPCYSILETSLEEFERVLDVNVYGA 116

Query: 170 TKVTQAVLPGMLKRKKG 186
              T+     M+  KKG
Sbjct: 117 FLGTKHAARVMIPAKKG 133

Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249

>gnl|CDD|135631 PRK05867, PRK05867, short chain dehydrogenase; Provisional

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 4/134 (2%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  AL+TG + GIGK  A    + G  + +  R+ D L+ ++D I     K       V 
Sbjct: 9   GKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVS 68

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
               +   ++++   + G+D+ V   N GI         ++     + L   NV G    
Sbjct: 69  QHQQVTSMLDQVTAELGGIDIAVC--NAGIITVTPML--DMPLEEFQRLQNTNVTGVFLT 124

Query: 173 TQAVLPGMLKRKKG 186
            QA    M+K+ +G
Sbjct: 125 AQAAAKAMVKQGQG 138

Length = 253

>gnl|CDD|187629 cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 12/135 (8%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDS-IQAKYAKTQIKSVVV 111
           G  A+VTG   G+G +   +L   G  +V++       + V+      ++    + S   
Sbjct: 2   GLVAVVTGGASGLGLATVERLLAQGAKVVILDLPNSPGETVAKLGDNCRFVPVDVTSEK- 60

Query: 112 DFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQV----LLKNLIKVNVE 167
               D+   +   K     LD  +++N  GI+     +  +  Q     L + +I VN+ 
Sbjct: 61  ----DVKAALALAKAKFGRLD--IVVNCAGIAVAAKTYNKKGQQPHSLELFQRVINVNLI 114

Query: 168 GTTKVTQAVLPGMLK 182
           GT  V +     M K
Sbjct: 115 GTFNVIRLAAGAMGK 129

HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 252

>gnl|CDD|187663 cd09762, HSDL2_SDR_c, human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 17/137 (12%)

Query: 58  VTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD---KLK----DVSDSIQAKYAKTQIKSVV 110
           +TG + GIGK+ A + A+ G N+V+  +  +   KL       ++ I+A   K     V 
Sbjct: 8   ITGASRGIGKAIALKAARDGANVVIAAKTAEPHPKLPGTIYTAAEEIEAAGGKALPCIVD 67

Query: 111 VDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKN---LIKVNVE 167
           +     +   VE+  E   G+D  +L+NN       A          +K    ++ VN  
Sbjct: 68  IRDEDQVRAAVEKAVEKFGGID--ILVNNAS-----AISLTGTLDTPMKRYDLMMGVNTR 120

Query: 168 GTTKVTQAVLPGMLKRK 184
           GT   ++A LP + K K
Sbjct: 121 GTYLCSKACLPYLKKSK 137

This subgroup includes human HSDL2 and related protens. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243

>gnl|CDD|169389 PRK08339, PRK08339, short chain dehydrogenase; Provisional

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 6/135 (4%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  A  T  + GIG   A  LA+ G +++L+ RN + LK   + I+++ +   +  +V D
Sbjct: 8   GKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSE-SNVDVSYIVAD 66

Query: 113 FSGDLDEGVER-IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
            +    E +ER +KE     +  +   + G   P   +F E+     +  +K+ +     
Sbjct: 67  LTK--REDLERTVKELKNIGEPDIFFFSTG--GPKPGYFMEMSMEDWEGAVKLLLYPAVY 122

Query: 172 VTQAVLPGMLKRKKG 186
           +T+A++P M ++  G
Sbjct: 123 LTRALVPAMERKGFG 137

Length = 263

>gnl|CDD|235736 PRK06196, PRK06196, oxidoreductase; Provisional

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 16/95 (16%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  A+VTG   G+G      LA+ G ++++  R PD          A+ A   I  V V 
Sbjct: 26  GKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDV---------AREALAGIDGVEVV 76

Query: 113 FS--GDLD---EGVERIKEAIEGLDVGVLINNVGI 142
                DL+      ER  ++   +D  +LINN G+
Sbjct: 77  MLDLADLESVRAFAERFLDSGRRID--ILINNAGV 109

Length = 315

>gnl|CDD|180440 PRK06172, PRK06172, short chain dehydrogenase; Provisional

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 11/139 (7%)

Query: 52  YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVV 111
            G  ALVTG   GIG++ A   A+ G  +V+  R+    ++    I+    +    +  V
Sbjct: 6   SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDV 65

Query: 112 DFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFH----EVDQVLLKNLIKVNVE 167
               ++   VE+   A   LD     NN GI     R       E D +     + VNV+
Sbjct: 66  TRDAEVKALVEQTIAAYGRLDYA--FNNAGIEIEQGRLAEGSEAEFDAI-----MGVNVK 118

Query: 168 GTTKVTQAVLPGMLKRKKG 186
           G     +  +P ML +  G
Sbjct: 119 GVWLCMKYQIPLMLAQGGG 137

Length = 253

>gnl|CDD|180371 PRK06057, PRK06057, short chain dehydrogenase; Provisional

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 50  RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSV 109
           R  G  A++TG   GIG + A +LA  G  +V+   +P+  K  +D +   +  T +   
Sbjct: 4   RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDE 63

Query: 110 VVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
                  ++   +   E    +D  +  NN GIS P             + +  VN+   
Sbjct: 64  D-----AVNALFDTAAETYGSVD--IAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSV 116

Query: 170 TKVTQAVLPGMLKRKKGLSMLN 191
               +A LP M+++ KG S++N
Sbjct: 117 YLCCKAALPHMVRQGKG-SIIN 137

Length = 255

>gnl|CDD|236326 PRK08655, PRK08655, prephenate dehydrogenase; Provisional

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSV----VVD 112
            + G T G+GK FA  L + G  +++ GR+P K K+V+  +  +YA   I +     +V 
Sbjct: 4   SIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVI 63

Query: 113 FSGDLDEGVERIKE 126
            S  ++   + IKE
Sbjct: 64  ISVPINVTEDVIKE 77

Length = 437

>gnl|CDD|235702 PRK06124, PRK06124, gluconate 5-dehydrogenase; Provisional

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG   G+G   A  LA  G ++++ GRN   L+    +++A     +  ++  D
Sbjct: 11  GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAE--ALAFD 68

Query: 113 FSGD--LDEGVERIKEAIEGLDVGVLINNVG 141
            + +  +     RI      LD  +L+NNVG
Sbjct: 69  IADEEAVAAAFARIDAEHGRLD--ILVNNVG 97

Length = 256

>gnl|CDD|180822 PRK07069, PRK07069, short chain dehydrogenase; Validated

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK-LKDVSDSIQAKYAKTQIKSVVVDFS 114
           A +TG   G+G++ A ++A+ G  + L   N    L   +  I A + +    + V D +
Sbjct: 2   AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVT 61

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
                   + +  +A+ GL   VL+NN G+    A    +++    + ++ +NVE     
Sbjct: 62  DEAQWQALLAQAADAMGGLS--VLVNNAGVGSFGA--IEQIELDEWRRVMAINVESIFLG 117

Query: 173 TQAVLPGMLKRKKGLSMLNI 192
            +  LP +   +   S++NI
Sbjct: 118 CKHALPYLRASQPA-SIVNI 136

Length = 251

>gnl|CDD|181349 PRK08278, PRK08278, short chain dehydrogenase; Provisional

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 25/145 (17%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN--PD-KLK----DVSDSIQAKYAKTQ 105
           G    +TG + GIG + A + A+ G N+V+  +   P  KL       ++ I+A  A  Q
Sbjct: 6   GKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEA--AGGQ 63

Query: 106 IKSVVVDFSGDLDEGVER-IKEAIE---GLDVGVLINNVGISYPYARFFHEVDQVLLKN- 160
              +V D     ++ V   + +A+E   G+D  + +NN       A      +   +K  
Sbjct: 64  ALPLVGDVRD--EDQVAAAVAKAVERFGGID--ICVNNAS-----AINLTGTEDTPMKRF 114

Query: 161 --LIKVNVEGTTKVTQAVLPGMLKR 183
             + ++NV GT  V+QA LP + K 
Sbjct: 115 DLMQQINVRGTFLVSQACLPHLKKS 139

Length = 273

>gnl|CDD|171531 PRK12481, PRK12481, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 16/145 (11%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIK--SVV 110
           G  A++TG   G+G+  A  LAK G ++V VG         +   QA+      K   + 
Sbjct: 8   GKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE------APETQAQVEALGRKFHFIT 61

Query: 111 VDFSG--DLDEGVERIKEAIEGLDVGVLINNVG-ISYPYARFFHEVDQVLLKNLIKVNVE 167
            D     D+D  V +  E +  +D  +LINN G I       F   D     ++I +N +
Sbjct: 62  ADLIQQKDIDSIVSQAVEVMGHID--ILINNAGIIRRQDLLEFGNKD---WDDVININQK 116

Query: 168 GTTKVTQAVLPGMLKRKKGLSMLNI 192
               ++QAV    +K+  G  ++NI
Sbjct: 117 TVFFLSQAVAKQFVKQGNGGKIINI 141

Length = 251

>gnl|CDD|187636 cd08931, SDR_c9, classical (c) SDR, subgroup 9

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 32/142 (22%), Positives = 54/142 (38%), Gaps = 14/142 (9%)

Query: 58  VTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVV--VDFSG 115
           +TG   GIG+  A   A+ G  + L   + D L  ++  + A+        V     ++ 
Sbjct: 5   ITGAASGIGRETALLFARNGWFVGLYDIDEDGLAALAAELGAENVVAGALDVTDRAAWAA 64

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARF--FHEVDQVLLKNLIKVNVEGTTKVT 173
            L +          G  +  L NN G+     R   F +V       ++ +NV+G     
Sbjct: 65  ALADFAAA-----TGGRLDALFNNAGV----GRGGPFEDVPLAAHDRMVDINVKGVLNGA 115

Query: 174 QAVLPGMLKRKKGLSMLNIGKA 195
            A LP  LK   G  ++N   +
Sbjct: 116 YAALP-YLKATPGARVINTASS 136

This subgroup has the canonical active site tetrad and NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 227

>gnl|CDD|180838 PRK07102, PRK07102, short chain dehydrogenase; Provisional

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 14/46 (30%), Positives = 27/46 (58%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYA 102
           L+ G T  I ++ A + A  G  L L  R+ ++L+ ++D ++A+ A
Sbjct: 5   LIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGA 50

Length = 243

>gnl|CDD|235693 PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 10/139 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            +VTG   GIG++ A +LAK G  +V+   N  K  +  +       +   + + V    
Sbjct: 9   VVVTGSGRGIGRAIAVRLAKEGSLVVV---NAKKRAEEMNETLKMVKENGGEGIGVLADV 65

Query: 116 DLDEGVERI-KEAIEGLD-VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              EG E + K  I+      +L+NN G+       F  VD  L+   I  + +     +
Sbjct: 66  STREGCETLAKATIDRYGVADILVNNAGLG--LFSPFLNVDDKLIDKHISTDFKSVIYCS 123

Query: 174 QAVLPGMLKRKKGLSMLNI 192
           Q +   M   ++G +++NI
Sbjct: 124 QELAKEM---REGGAIVNI 139

Length = 252

>gnl|CDD|212496 cd11730, Tthb094_like_SDR_c, Tthb094 and related proteins, classical (c) SDRs

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL 90
          AL+ G T GIG++ A  LA  G  L+L GR+   L
Sbjct: 1  ALILGATGGIGRALARALAGRGWRLLLSGRDAGAL 35

Tthb094 from Thermus Thermophilus is a classical SDR which binds NADP. Members of this subgroup contain the YXXXK active site characteristic of SDRs. Also, an upstream Asn residue of the canonical catalytic tetrad is partially conserved in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 206

>gnl|CDD|236210 PRK08267, PRK08267, short chain dehydrogenase; Provisional

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 12/142 (8%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS-- 114
            +TG   GIG++ A   A  G  +     N   L  ++  + A  A T      +D +  
Sbjct: 5   FITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTG----ALDVTDR 60

Query: 115 GDLDEGVERIKEAIEG-LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              D  +     A  G LDV  L NN GI       F ++       +I +NV+G     
Sbjct: 61  AAWDAALADFAAATGGRLDV--LFNNAGI--LRGGPFEDIPLEAHDRVIDINVKGVLNGA 116

Query: 174 QAVLPGMLKRKKGLSMLNIGKA 195
            A LP  LK   G  ++N   A
Sbjct: 117 HAALP-YLKATPGARVINTSSA 137

Length = 260

>gnl|CDD|135765 PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydrogenase; Validated

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 40/151 (26%), Positives = 59/151 (39%), Gaps = 18/151 (11%)

Query: 48  NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIK 107
           NLR  G  A++TG   GIGK  A   A  G ++V+   N D    V D IQ    +    
Sbjct: 6   NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFAC 65

Query: 108 SVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVG------ISYPYARFFHEVDQVLLKNL 161
              +    +L    +     +  +D  +L+NN G         P A F         +  
Sbjct: 66  RCDITSEQELSALADFALSKLGKVD--ILVNNAGGGGPKPFDMPMADF---------RRA 114

Query: 162 IKVNVEGTTKVTQAVLPGMLKRKKGLSMLNI 192
            ++NV     ++Q V P M K   G  +L I
Sbjct: 115 YELNVFSFFHLSQLVAPEMEKNGGG-VILTI 144

Length = 255

>gnl|CDD|187654 cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 14/92 (15%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVV-DFSG 115
            +TG +DG+G + A  L   G  +VL  R+  +  D       K A      V++ D S 
Sbjct: 11  FITGSSDGLGLAAARTLLHQGHEVVLHARSQKRAADA------KAACPGAAGVLIGDLS- 63

Query: 116 DLDEGVERIKE---AIEGLDVGVLINNVGISY 144
            L E   ++ +   AI   D   +I+N GI  
Sbjct: 64  SLAE-TRKLADQVNAIGRFD--AVIHNAGILS 92

Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 260

>gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 11/92 (11%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL---------KDVSDSIQAKYAKTQIK 107
            V G T   G+    +L   G  +  + RNP K          KD+ D      A   + 
Sbjct: 2   AVIGATGKTGRRLVKELLARGHQVTALSRNPSKAPAPGVTPVQKDLFDLADLAEALAGVD 61

Query: 108 SVVVDFSGDLD--EGVERIKEAIEGLDVGVLI 137
           +VV  F    D  +GV+ + +A     V  ++
Sbjct: 62  AVVDAFGARPDDSDGVKHLLDAAARAGVRRIV 93

Length = 182

>gnl|CDD|181585 PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 13/145 (8%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVV 111
           G   ++TG + G+G++ A +  K    +V+  R + ++  DV++ I+   A  +  +V  
Sbjct: 7   GKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKK--AGGEAIAVKG 64

Query: 112 DFSGDLDEGVER-IKEAIE---GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVE 167
           D +  ++  V   I+ A++    LD  V+INN GI        HE+       +I  N+ 
Sbjct: 65  DVT--VESDVVNLIQTAVKEFGTLD--VMINNAGIENAVPS--HEMSLEDWNKVINTNLT 118

Query: 168 GTTKVTQAVLPGMLKRKKGLSMLNI 192
           G    ++  +   ++     +++N+
Sbjct: 119 GAFLGSREAIKYFVEHDIKGNIINM 143

Length = 261

>gnl|CDD|236056 PRK07576, PRK07576, short chain dehydrogenase; Provisional

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 22/148 (14%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSV-VV 111
           G   +V G T GI    A   A+ G N+ +  R+ +K+      +Q    +    S  V 
Sbjct: 9   GKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVR 68

Query: 112 DFSGDLDEGVERIKEAIEGLDVGV-------LINNVGISYPYARFFHEVDQVLLKNLIKV 164
           D++  ++    +I +    +DV V            G+S   A  F        K ++ +
Sbjct: 69  DYAA-VEAAFAQIADEFGPIDVLVSGAAGNFPAPAAGMS---ANGF--------KTVVDI 116

Query: 165 NVEGTTKVTQAVLPGMLKRKKGLSMLNI 192
           ++ GT  V +A  P  L R+ G S++ I
Sbjct: 117 DLLGTFNVLKAAYP--LLRRPGASIIQI 142

Length = 264

>gnl|CDD|180399 PRK06101, PRK06101, short chain dehydrogenase; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYA 102
           L+TG T GIGK  A   AK G  ++  GRN    + V D +  + A
Sbjct: 5   LITGATSGIGKQLALDYAKQGWQVIACGRN----QSVLDELHTQSA 46

Length = 240

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 13/95 (13%)

Query: 51  KYGSWALVTGPTDGIGKSFAFQLAK-TGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSV 109
           K G   LV G   G+G S A QLAK  G  +V V  + +K          +  K      
Sbjct: 141 KPGETVLVHGAAGGVG-SAAIQLAKALGATVVAVVSSSEK---------LELLKELGADH 190

Query: 110 VVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISY 144
           V+++    ++ VE+++E   G  V V+++ VG   
Sbjct: 191 VINY--REEDFVEQVRELTGGKGVDVVLDTVGGDT 223

Length = 326

>gnl|CDD|212495 cd09807, retinol-DH_like_SDR_c, retinol dehydrogenases (retinol-DHs), classical (c) SDRs

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G   ++TG   GIGK  A +LA+ G  +++  R+  K ++ +  I+      ++    +D
Sbjct: 1   GKTVIITGANTGIGKETARELARRGARVIMACRDMAKCEEAAAEIRRDTLNHEVIVRHLD 60

Query: 113 FSGDLDEGVERIKEAIEGLD-VGVLINNVGI 142
            +  L        E +   D + VLINN G+
Sbjct: 61  LA-SLKSIRAFAAEFLAEEDRLDVLINNAGV 90

Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 274

>gnl|CDD|171822 PRK12938, PRK12938, acetyacetyl-CoA reductase; Provisional

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 22/146 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF-- 113
           A VTG   GIG S   +L K G   V+ G  P+  +      + K+ + Q K++  DF  
Sbjct: 6   AYVTGGMGGIGTSICQRLHKDGFK-VVAGCGPNSPR------RVKWLEDQ-KALGFDFIA 57

Query: 114 ----SGDLD---EGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNV 166
                GD D      +++K  +  +D  VL+NN GI+      F ++ +     +I  N+
Sbjct: 58  SEGNVGDWDSTKAAFDKVKAEVGEID--VLVNNAGITRDVV--FRKMTREDWTAVIDTNL 113

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNI 192
                VT+ V+ GM++R  G  ++NI
Sbjct: 114 TSLFNVTKQVIDGMVERGWG-RIINI 138

Length = 246

>gnl|CDD|181120 PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 18/98 (18%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVL--VGRNPDKLKDVSDSIQAKYAKTQIKSVV 110
           G  A+VTG   G+G++ A  LA+ G  +V+  V    D   DV D I+A  AK       
Sbjct: 12  GKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDA-SDVLDEIRAAGAK------A 64

Query: 111 VDFSGDL------DEGVERIKEAIEGLDVGVLINNVGI 142
           V  +GD+      DE V      + GLD  +++NN GI
Sbjct: 65  VAVAGDISQRATADELVA-TAVGLGGLD--IVVNNAGI 99

Length = 306

>gnl|CDD|187669 cd09809, human_WWOX_like_SDR_c-like, human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G   ++TG   GIG   A   A  G +++L  RN  +       I  ++ K +++++ +D
Sbjct: 1   GKVIIITGANSGIGFETARSFALHGAHVILACRNMSRASAAVSRILEEWHKARVEAMTLD 60

Query: 113 FSGDLDEGVERIKEAIEG--LDVGVLINNVGI-SYPYAR 148
            +      V+R  EA +     + VL+ N  + + P+  
Sbjct: 61  LA--SLRSVQRFAEAFKAKNSPLHVLVCNAAVFALPWTL 97

Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 284

>gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 23/123 (18%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF-S 114
             V G T  IG+    +LAK G  +++  R             A+          V F  
Sbjct: 3   VTVFGATGFIGRYVVNRLAKRGSQVIVPYRCEA---------YARRLLVMGDLGQVLFVE 53

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
            DL +  E I++A+EG D  V+IN VG  Y    F  E           V+VEG  ++ +
Sbjct: 54  FDLRDD-ESIRKALEGSD--VVINLVGRLYETKNFSFE----------DVHVEGPERLAK 100

Query: 175 AVL 177
           A  
Sbjct: 101 AAK 103

This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273

>gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 57  LVTGPTDGIGKSFAFQLAK-TGLNLVLVGR---NPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           LVTG   GIG++ A  LA+  G  LVL+GR    P++          +    ++  +  D
Sbjct: 209 LVTGGAGGIGRALARALARRYGARLVLLGRSPLPPEEEWKAQTLAALEALGARVLYISAD 268

Query: 113 FS--GDLDEGVERIKEAIEGLDVGVL 136
            +    +   +E+++E    +D GV+
Sbjct: 269 VTDAAAVRRLLEKVRERYGAID-GVI 293

Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436

>gnl|CDD|169390 PRK08340, PRK08340, glucose-1-dehydrogenase; Provisional

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           LVT  + GIG + A +L K G  +V+  RN + L+     ++      ++ +V  D S D
Sbjct: 4   LVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELK---EYGEVYAVKADLS-D 59

Query: 117 LDEGVERIKEAIEGLD-VGVLINNVG 141
            D+    +KEA E L  +  L+ N G
Sbjct: 60  KDDLKNLVKEAWELLGGIDALVWNAG 85

Length = 259

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
PLN02780	320	ketoreductase/ oxidoreductase	100.0
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	100.0
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	100.0
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	100.0
COG0300	265	DltE Short-chain dehydrogenases of various substra	100.0
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	100.0
PRK08339	263	short chain dehydrogenase; Provisional	99.95
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	99.95
PRK07062	265	short chain dehydrogenase; Provisional	99.94
PRK06139	330	short chain dehydrogenase; Provisional	99.94
KOG1208	314	consensus Dehydrogenases with different specificit	99.94
PRK07063	260	short chain dehydrogenase; Provisional	99.94
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	99.94
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	99.94
PRK05876	275	short chain dehydrogenase; Provisional	99.94
KOG0725	270	consensus Reductases with broad range of substrate	99.93
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.93
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	99.93
PRK05872	296	short chain dehydrogenase; Provisional	99.93
PRK07478	254	short chain dehydrogenase; Provisional	99.93
PRK08862	227	short chain dehydrogenase; Provisional	99.93
PRK08589	272	short chain dehydrogenase; Validated	99.93
PRK05854	313	short chain dehydrogenase; Provisional	99.93
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	99.93
PRK05867	253	short chain dehydrogenase; Provisional	99.93
PRK07791	286	short chain dehydrogenase; Provisional	99.93
PRK07109	334	short chain dehydrogenase; Provisional	99.93
PRK09242	257	tropinone reductase; Provisional	99.92
PLN02253	280	xanthoxin dehydrogenase	99.92
PRK07825	273	short chain dehydrogenase; Provisional	99.92
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	99.92
PRK06114	254	short chain dehydrogenase; Provisional	99.92
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	99.92
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	99.92
PRK08085	254	gluconate 5-dehydrogenase; Provisional	99.92
PRK06125	259	short chain dehydrogenase; Provisional	99.92
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	99.92
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	99.92
PRK06194	287	hypothetical protein; Provisional	99.92
PRK07097	265	gluconate 5-dehydrogenase; Provisional	99.92
PRK08303	305	short chain dehydrogenase; Provisional	99.92
PRK07677	252	short chain dehydrogenase; Provisional	99.92
PRK06398	258	aldose dehydrogenase; Validated	99.92
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	99.92
PRK05717	255	oxidoreductase; Validated	99.92
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.92
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	99.91
PRK05599	246	hypothetical protein; Provisional	99.91
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.91
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	99.91
PRK08277	278	D-mannonate oxidoreductase; Provisional	99.91
PRK07523	255	gluconate 5-dehydrogenase; Provisional	99.91
PRK05866	293	short chain dehydrogenase; Provisional	99.91
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	99.91
PRK08251	248	short chain dehydrogenase; Provisional	99.91
PRK08265	261	short chain dehydrogenase; Provisional	99.91
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	99.91
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	99.91
PRK07035	252	short chain dehydrogenase; Provisional	99.91
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	99.91
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	99.91
PRK08340	259	glucose-1-dehydrogenase; Provisional	99.91
PRK07024	257	short chain dehydrogenase; Provisional	99.91
PRK06172	253	short chain dehydrogenase; Provisional	99.91
PRK12747	252	short chain dehydrogenase; Provisional	99.91
PRK06124	256	gluconate 5-dehydrogenase; Provisional	99.91
PRK08278	273	short chain dehydrogenase; Provisional	99.91
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	99.91
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.91
PRK09186	256	flagellin modification protein A; Provisional	99.91
PRK05993	277	short chain dehydrogenase; Provisional	99.91
PRK05855	582	short chain dehydrogenase; Validated	99.91
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	99.91
PRK08643	256	acetoin reductase; Validated	99.91
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	99.9
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.9
PRK06484	520	short chain dehydrogenase; Validated	99.9
PRK07814	263	short chain dehydrogenase; Provisional	99.9
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.9
PRK07831	262	short chain dehydrogenase; Provisional	99.9
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	99.9
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	99.9
PRK06197	306	short chain dehydrogenase; Provisional	99.9
PRK07576	264	short chain dehydrogenase; Provisional	99.9
PRK06180	277	short chain dehydrogenase; Provisional	99.9
PRK07067	257	sorbitol dehydrogenase; Provisional	99.9
PRK05650	270	short chain dehydrogenase; Provisional	99.9
PRK06138	252	short chain dehydrogenase; Provisional	99.9
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	99.9
PRK07890	258	short chain dehydrogenase; Provisional	99.9
PRK08703	239	short chain dehydrogenase; Provisional	99.9
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	99.9
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	99.9
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	99.9
PRK07904	253	short chain dehydrogenase; Provisional	99.9
PRK09072	263	short chain dehydrogenase; Provisional	99.9
PRK08936	261	glucose-1-dehydrogenase; Provisional	99.9
PRK07832	272	short chain dehydrogenase; Provisional	99.9
PRK06484	520	short chain dehydrogenase; Validated	99.9
PRK06182	273	short chain dehydrogenase; Validated	99.9
PRK06128	300	oxidoreductase; Provisional	99.9
PRK07856	252	short chain dehydrogenase; Provisional	99.9
PRK07985	294	oxidoreductase; Provisional	99.9
PRK07102	243	short chain dehydrogenase; Provisional	99.89
PLN00015	308	protochlorophyllide reductase	99.89
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	99.89
PRK06914	280	short chain dehydrogenase; Provisional	99.89
PRK12938	246	acetyacetyl-CoA reductase; Provisional	99.89
PRK07453	322	protochlorophyllide oxidoreductase; Validated	99.89
PRK06179	270	short chain dehydrogenase; Provisional	99.89
PRK12743	256	oxidoreductase; Provisional	99.89
PRK07774	250	short chain dehydrogenase; Provisional	99.89
PRK08263	275	short chain dehydrogenase; Provisional	99.89
PRK07454	241	short chain dehydrogenase; Provisional	99.89
PRK06523	260	short chain dehydrogenase; Provisional	99.89
PRK08267	260	short chain dehydrogenase; Provisional	99.89
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.89
PRK06841	255	short chain dehydrogenase; Provisional	99.89
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	99.89
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.89
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.89
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	99.89
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	99.89
PRK06057	255	short chain dehydrogenase; Provisional	99.89
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	99.89
PRK08628	258	short chain dehydrogenase; Provisional	99.89
TIGR02415	254	23BDH acetoin reductases. One member of this famil	99.89
PRK06196	315	oxidoreductase; Provisional	99.89
PRK08213	259	gluconate 5-dehydrogenase; Provisional	99.89
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	99.89
PRK12939	250	short chain dehydrogenase; Provisional	99.88
PRK07069	251	short chain dehydrogenase; Validated	99.88
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	99.88
PRK06949	258	short chain dehydrogenase; Provisional	99.88
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.88
PRK12935	247	acetoacetyl-CoA reductase; Provisional	99.88
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	99.88
PRK06483	236	dihydromonapterin reductase; Provisional	99.88
PRK05875	276	short chain dehydrogenase; Provisional	99.88
PRK07775	274	short chain dehydrogenase; Provisional	99.88
PRK08226	263	short chain dehydrogenase; Provisional	99.88
PRK06482	276	short chain dehydrogenase; Provisional	99.88
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	99.88
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	99.88
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	99.88
PRK06500	249	short chain dehydrogenase; Provisional	99.88
PRK09134	258	short chain dehydrogenase; Provisional	99.88
PRK07201	657	short chain dehydrogenase; Provisional	99.87
PRK10538	248	malonic semialdehyde reductase; Provisional	99.87
PRK09291	257	short chain dehydrogenase; Provisional	99.87
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.87
PRK06701	290	short chain dehydrogenase; Provisional	99.87
PRK06123	248	short chain dehydrogenase; Provisional	99.87
PRK06198	260	short chain dehydrogenase; Provisional	99.87
PRK12937	245	short chain dehydrogenase; Provisional	99.87
PRK06101	240	short chain dehydrogenase; Provisional	99.87
PRK06947	248	glucose-1-dehydrogenase; Provisional	99.87
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	99.87
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.86
PRK12746	254	short chain dehydrogenase; Provisional	99.86
PRK05693	274	short chain dehydrogenase; Provisional	99.86
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	99.86
PRK12824	245	acetoacetyl-CoA reductase; Provisional	99.86
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	99.86
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.86
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	99.86
PRK06181	263	short chain dehydrogenase; Provisional	99.86
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	99.86
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.85
PRK07326	237	short chain dehydrogenase; Provisional	99.85
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	99.85
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.85
PRK12744	257	short chain dehydrogenase; Provisional	99.85
PRK12827	249	short chain dehydrogenase; Provisional	99.85
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.85
COG1028	251	FabG Dehydrogenases with different specificities (	99.85
PRK06924	251	short chain dehydrogenase; Provisional	99.85
PRK12828	239	short chain dehydrogenase; Provisional	99.85
PRK08264	238	short chain dehydrogenase; Validated	99.85
KOG1611	249	consensus Predicted short chain-type dehydrogenase	99.85
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	99.85
PRK07060	245	short chain dehydrogenase; Provisional	99.85
PRK12742	237	oxidoreductase; Provisional	99.85
PRK07074	257	short chain dehydrogenase; Provisional	99.84
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.84
PRK05884	223	short chain dehydrogenase; Provisional	99.84
PRK06940	275	short chain dehydrogenase; Provisional	99.84
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.84
PRK12367	245	short chain dehydrogenase; Provisional	99.84
PRK12829	264	short chain dehydrogenase; Provisional	99.84
PRK08324	681	short chain dehydrogenase; Validated	99.84
PRK07023	243	short chain dehydrogenase; Provisional	99.83
PRK08177	225	short chain dehydrogenase; Provisional	99.83
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	99.83
PRK06720	169	hypothetical protein; Provisional	99.82
PRK06953	222	short chain dehydrogenase; Provisional	99.82
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.82
PRK08017	256	oxidoreductase; Provisional	99.82
PRK07041	230	short chain dehydrogenase; Provisional	99.82
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	99.81
PRK07578	199	short chain dehydrogenase; Provisional	99.81
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	99.81
PRK09135	249	pteridine reductase; Provisional	99.81
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.81
PRK09009	235	C factor cell-cell signaling protein; Provisional	99.81
PRK07577	234	short chain dehydrogenase; Provisional	99.81
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.79
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	99.77
PRK08219	227	short chain dehydrogenase; Provisional	99.77
KOG1478	341	consensus 3-keto sterol reductase [Lipid transport	99.76
PRK07806	248	short chain dehydrogenase; Provisional	99.75
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	99.75
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	99.75
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	99.73
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	99.71
PLN03209	576	translocon at the inner envelope of chloroplast su	99.66
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	99.64
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	99.63
PLN02653	340	GDP-mannose 4,6-dehydratase	99.62
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.62
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	99.6
KOG1204	253	consensus Predicted dehydrogenase [Secondary metab	99.6
PLN02896	353	cinnamyl-alcohol dehydrogenase	99.56
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	99.56
PLN02240	352	UDP-glucose 4-epimerase	99.55
PLN02583	297	cinnamoyl-CoA reductase	99.55
PLN02572	442	UDP-sulfoquinovose synthase	99.55
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	99.54
PLN02214	342	cinnamoyl-CoA reductase	99.53
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	99.53
PLN02650	351	dihydroflavonol-4-reductase	99.52
PLN00198	338	anthocyanidin reductase; Provisional	99.51
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	99.51
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	99.51
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	99.47
PRK10675	338	UDP-galactose-4-epimerase; Provisional	99.47
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	99.45
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	99.41
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	99.4
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	99.39
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	99.38
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	99.38
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	99.37
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	99.36
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	99.33
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	99.33
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	99.31
PLN02427	386	UDP-apiose/xylose synthase	99.29
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	99.27
PLN02686	367	cinnamoyl-CoA reductase	99.26
TIGR01746	367	Thioester-redct thioester reductase domain. It has	99.25
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	99.21
PLN02260	668	probable rhamnose biosynthetic enzyme	99.2
CHL00194	317	ycf39 Ycf39; Provisional	99.2
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	99.18
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	99.18
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	99.17
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.15
PLN02206	442	UDP-glucuronate decarboxylase	99.15
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	99.14
PLN02166	436	dTDP-glucose 4,6-dehydratase	99.14
PRK07201	657	short chain dehydrogenase; Provisional	99.09
PLN02695	370	GDP-D-mannose-3',5'-epimerase	99.09
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	99.09
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	99.06
PRK05865	854	hypothetical protein; Provisional	99.05
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	99.05
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	99.03
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	99.02
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	98.96
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	98.96
PF08643	299	DUF1776: Fungal family of unknown function (DUF177	98.96
PLN02503	605	fatty acyl-CoA reductase 2	98.95
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	98.92
PLN02778	298	3,5-epimerase/4-reductase	98.92
PLN02996	491	fatty acyl-CoA reductase	98.91
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	98.91
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	98.86
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	98.84
PRK08309	177	short chain dehydrogenase; Provisional	98.81
COG3320	382	Putative dehydrogenase domain of multifunctional n	98.79
PRK12320	699	hypothetical protein; Provisional	98.77
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	98.72
PRK12548	289	shikimate 5-dehydrogenase; Provisional	98.7
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	98.65
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.64
PLN02260	668	probable rhamnose biosynthetic enzyme	98.61
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	98.57
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	98.53
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	98.5
PLN00016	378	RNA-binding protein; Provisional	98.49
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	98.49
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.34
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	98.27
KOG1221	467	consensus Acyl-CoA reductase [Lipid transport and	98.26
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	98.25
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.23
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	98.21
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	98.21
PRK14982	340	acyl-ACP reductase; Provisional	98.13
PRK09620	229	hypothetical protein; Provisional	98.12
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.09
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.06
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	98.02
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	98.01
PTZ00325	321	malate dehydrogenase; Provisional	97.99
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.99
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	97.98
PLN00106	323	malate dehydrogenase	97.93
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.91
COG2910	211	Putative NADH-flavin reductase [General function p	97.85
KOG2865	391	consensus NADH:ubiquinone oxidoreductase, NDUFA9/3	97.83
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	97.79
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.79
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	97.75
KOG2733	423	consensus Uncharacterized membrane protein [Functi	97.73
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	97.71
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.65
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	97.63
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.61
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.59
COG4982	866	3-oxoacyl-[acyl-carrier protein]	97.57
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.57
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.56
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.56
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	97.52
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	97.51
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	97.47
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	97.44
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.41
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	97.41
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.4
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	97.4
PRK05086	312	malate dehydrogenase; Provisional	97.39
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	97.35
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.35
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.34
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	97.33
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.31
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.3
PRK06849	389	hypothetical protein; Provisional	97.28
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	97.28
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.27
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.27
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	97.26
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.23
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	97.21
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.19
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	97.18
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	97.17
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.16
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	97.13
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.11
PRK08223	287	hypothetical protein; Validated	97.11
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.1
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.1
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.09
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	97.08
KOG0747	331	consensus Putative NAD+-dependent epimerases [Carb	97.07
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.06
COG3268	382	Uncharacterized conserved protein [Function unknow	97.06
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.05
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	97.04
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	97.02
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.02
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	97.02
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.96
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	96.95
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.92
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	96.9
COG2130	340	Putative NADP-dependent oxidoreductases [General f	96.88
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	96.86
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.86
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.85
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	96.84
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	96.84
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	96.83
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	96.8
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.8
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.78
PLN02928	347	oxidoreductase family protein	96.78
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	96.76
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	96.76
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.75
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.73
PRK07411	390	hypothetical protein; Validated	96.73
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	96.73
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	96.73
PRK13243	333	glyoxylate reductase; Reviewed	96.72
PLN02740	381	Alcohol dehydrogenase-like	96.72
PRK14968	188	putative methyltransferase; Provisional	96.7
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	96.7
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.67
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.67
PRK08328	231	hypothetical protein; Provisional	96.65
PRK12480	330	D-lactate dehydrogenase; Provisional	96.65
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	96.63
PRK06436	303	glycerate dehydrogenase; Provisional	96.63
PTZ00117	319	malate dehydrogenase; Provisional	96.6
PLN00203	519	glutamyl-tRNA reductase	96.6
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	96.6
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	96.59
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.57
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	96.57
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	96.56
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	96.55
PTZ00354	334	alcohol dehydrogenase; Provisional	96.55
PRK06487	317	glycerate dehydrogenase; Provisional	96.55
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	96.53
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.53
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	96.52
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	96.52
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	96.51
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	96.5
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	96.49
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.48
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	96.47
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	96.46
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	96.46
PRK07574	385	formate dehydrogenase; Provisional	96.46
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	96.45
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.43
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	96.42
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.42
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	96.42
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.41
PLN00112	444	malate dehydrogenase (NADP); Provisional	96.41
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	96.41
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.39
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	96.38
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	96.35
PLN03139	386	formate dehydrogenase; Provisional	96.34
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.34
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	96.34
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	96.34
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.32
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	96.31
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	96.29
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.29
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.28
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	96.27
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	96.25
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	96.24
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	96.24
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	96.22
PRK04148	134	hypothetical protein; Provisional	96.21
PLN02602	350	lactate dehydrogenase	96.21
PLN02827	378	Alcohol dehydrogenase-like	96.2
PRK06932	314	glycerate dehydrogenase; Provisional	96.2
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	96.19
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.17
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	96.17
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	96.17
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	96.17
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.15
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.12
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	96.11
PRK09496	453	trkA potassium transporter peripheral membrane com	96.1
PRK14851	679	hypothetical protein; Provisional	96.09
KOG1372	376	consensus GDP-mannose 4,6 dehydratase [Carbohydrat	96.07
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	96.05
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.0
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.98
PLN02494	477	adenosylhomocysteinase	95.96
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	95.94
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	95.9
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.86
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.86
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	95.85
PRK05442	326	malate dehydrogenase; Provisional	95.85
PF12076	164	Wax2_C: WAX2 C-terminal domain; InterPro: IPR02194	95.84
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	95.83
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	95.81
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	95.81
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.81
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	95.8
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.8
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	95.78
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.76
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	95.76
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	95.75
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	95.75
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	95.74
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.72
PRK07877	722	hypothetical protein; Provisional	95.7
PRK06223	307	malate dehydrogenase; Reviewed	95.7
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	95.69
PRK08655	437	prephenate dehydrogenase; Provisional	95.68
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	95.67
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	95.64
PRK10669	558	putative cation:proton antiport protein; Provision	95.64
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	95.61
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	95.61
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.58
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	95.56
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.56
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.53
PRK14852	989	hypothetical protein; Provisional	95.52
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.51
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	95.5

>PLN02780 ketoreductase/ oxidoreductase

Probab=100.00  E-value=3.3e-36  Score=245.83  Aligned_cols=198  Identities=81%  Similarity=1.294  Sum_probs=178.6

Q ss_pred             CcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccCCcEEEEECCCChHHHHHHHHHHHCCCcE
Q 028656            1 MESCFLNTLKTQPLWLLALFTIGSLSVLRLAFVILNWVYVNFLRPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNL   80 (206)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V   80 (206)
                      ||-||+....++|+|+..++++|.+.++..++.++.+++..+.++.++++.+|++++||||++|||+++|++|+++|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lITGAs~GIG~alA~~La~~G~~V   80 (320)
T PLN02780          1 MELCFVDKLKSQPLWLLVLFVLGSLSILKFFFTILNWVYVYFLRPAKNLKKYGSWALVTGPTDGIGKGFAFQLARKGLNL   80 (320)
T ss_pred             CchhHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCEEEEeCCCcHHHHHHHHHHHHCCCCE
Confidence            88899999999999999999999999999999999999988887777777789999999999999999999999999999


Q ss_pred             EEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHH
Q 028656           81 VLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKN  160 (206)
Q Consensus        81 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~  160 (206)
                      ++++|++++++++.+++++.+++.++..+.+|++++.++.++++.+.+++.|+|++|||||+..+...++.+.+.+++++
T Consensus        81 il~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~  160 (320)
T PLN02780         81 VLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGLDVGVLINNVGVSYPYARFFHEVDEELLKN  160 (320)
T ss_pred             EEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCCCccEEEEecCcCCCCCcccccCCHHHHHH
Confidence            99999999999999988876556678889999997666778888888888788899999998754334578899999999


Q ss_pred             HHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          161 LIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       161 ~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      ++++|+.|++.++++++|.|++++.|+ ||++||.++..
T Consensus       161 ~~~vN~~g~~~l~~~~lp~m~~~~~g~-IV~iSS~a~~~  198 (320)
T PLN02780        161 LIKVNVEGTTKVTQAVLPGMLKRKKGA-IINIGSGAAIV  198 (320)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhcCCcE-EEEEechhhcc
Confidence            999999999999999999999888888 99999999865

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.7e-33  Score=217.84  Aligned_cols=150  Identities=23%  Similarity=0.318  Sum_probs=136.3

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      +..+.+|++|+||||++|+||++|.+++++|+++++.|.|.+..++..+++++.   ++++...||+++.  +.+..+++
T Consensus        32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~---g~~~~y~cdis~~eei~~~a~~V  108 (300)
T KOG1201|consen   32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI---GEAKAYTCDISDREEIYRLAKKV  108 (300)
T ss_pred             chhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc---CceeEEEecCCCHHHHHHHHHHH
Confidence            455677999999999999999999999999999999999999999999999875   3889999999975  36777889


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++|+  +|++|||||+...  +++.+.++|++++++++|+.|+++++|+++|.|.++++|+ ||+|+|.+|..+.|+-
T Consensus       109 k~e~G~--V~ILVNNAGI~~~--~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GH-IV~IaS~aG~~g~~gl  183 (300)
T KOG1201|consen  109 KKEVGD--VDILVNNAGIVTG--KKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGH-IVTIASVAGLFGPAGL  183 (300)
T ss_pred             HHhcCC--ceEEEeccccccC--CCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCce-EEEehhhhcccCCccc
Confidence            999995  5599999999976  4488999999999999999999999999999999999999 9999999999999853

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.1e-33  Score=220.37  Aligned_cols=152  Identities=32%  Similarity=0.485  Sum_probs=136.1

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      ..++.||+|+|||||+|||.++|++|+++|++++++.|..++++++.+++++..+..+++.+++|++|.  .+++++.+.
T Consensus         7 ~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~   86 (282)
T KOG1205|consen    7 MERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAI   86 (282)
T ss_pred             HHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHH
Confidence            345779999999999999999999999999999999999999999999999887555799999999985  356667777


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ..+|++|  +||||||+...  .+.++.+.+++++.|++|++|+.+++|+++|+|++++.|+ ||++||.+|+.+.|..
T Consensus        87 ~~fg~vD--vLVNNAG~~~~--~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~Gh-IVvisSiaG~~~~P~~  160 (282)
T KOG1205|consen   87 RHFGRVD--VLVNNAGISLV--GFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGH-IVVISSIAGKMPLPFR  160 (282)
T ss_pred             HhcCCCC--EEEecCccccc--cccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCe-EEEEeccccccCCCcc
Confidence            8888655  99999999984  4478889999999999999999999999999999998788 9999999999999974

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=100.00  E-value=3.2e-32  Score=207.99  Aligned_cols=145  Identities=31%  Similarity=0.490  Sum_probs=131.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      .++|+++|||||||||.++|+.|++.|++|++++|+.++++++++++.+    ..+.....|++|.  +++.++.+.+++
T Consensus         4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~----~~~~~~~~DVtD~~~~~~~i~~~~~~~   79 (246)
T COG4221           4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA----GAALALALDVTDRAAVEAAIEALPEEF   79 (246)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc----CceEEEeeccCCHHHHHHHHHHHHHhh
Confidence            4579999999999999999999999999999999999999999998843    5788999999985  356778888888


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++|  +||||||....  .++.+.+.|+|++++++|+.|.++.+++++|.|.+++.|. |||+||.+|..+.|+.
T Consensus        80 g~iD--iLvNNAGl~~g--~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~-IiN~~SiAG~~~y~~~  150 (246)
T COG4221          80 GRID--ILVNNAGLALG--DPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGH-IINLGSIAGRYPYPGG  150 (246)
T ss_pred             Cccc--EEEecCCCCcC--ChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCce-EEEeccccccccCCCC
Confidence            8655  99999999876  4599999999999999999999999999999999999998 9999999999999965

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=100.00  E-value=6.1e-32  Score=211.53  Aligned_cols=148  Identities=34%  Similarity=0.541  Sum_probs=133.3

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .++++++|||||+|||.++|++|+++|++|++++|+.+++++++++++..+ +.++.++++|+++.  +.++++.+.+..
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~--~~~~~l~~~l~~   80 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDP--EALERLEDELKE   80 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCCh--hHHHHHHHHHHh
Confidence            468999999999999999999999999999999999999999999999875 78899999999987  555555554433


Q ss_pred             --CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          131 --LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 --~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                        .++|++|||||.....  +|.+.+.++.++++++|+.++..++++++|.|.+++.|+ ||||+|.+|..|.|+.
T Consensus        81 ~~~~IdvLVNNAG~g~~g--~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~-IiNI~S~ag~~p~p~~  153 (265)
T COG0300          81 RGGPIDVLVNNAGFGTFG--PFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGH-IINIGSAAGLIPTPYM  153 (265)
T ss_pred             cCCcccEEEECCCcCCcc--chhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce-EEEEechhhcCCCcch
Confidence              2677999999999874  499999999999999999999999999999999999999 9999999999999854

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=100.00  E-value=2.9e-31  Score=208.47  Aligned_cols=158  Identities=43%  Similarity=0.745  Sum_probs=146.1

Q ss_pred             cCCcccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHH
Q 028656           44 RPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVER  123 (206)
Q Consensus        44 ~~~~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  123 (206)
                      ++....+..|+|++||||+.|||++.|++||++|.+|++++|+.++++.+++|+.+.+. .++..+.+|.++..+ ..++
T Consensus        40 ~~~~~~~~~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~-vev~~i~~Dft~~~~-~ye~  117 (312)
T KOG1014|consen   40 RPKDLKEKLGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYK-VEVRIIAIDFTKGDE-VYEK  117 (312)
T ss_pred             eecchHHhcCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhC-cEEEEEEEecCCCch-hHHH
Confidence            34455556789999999999999999999999999999999999999999999998875 889999999998755 6799


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +.+.+.+.|+.++|||+|...+.+..|.+.+.+.+++++++|..++..+++.++|.|.++++|. |||+||.+|..|.|.
T Consensus       118 i~~~l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~-IvnigS~ag~~p~p~  196 (312)
T KOG1014|consen  118 LLEKLAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGI-IVNIGSFAGLIPTPL  196 (312)
T ss_pred             HHHHhcCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCce-EEEeccccccccChh
Confidence            9999999999999999999998788899999989999999999999999999999999999999 999999999999994


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      .
T Consensus       197 ~  197 (312)
T KOG1014|consen  197 L  197 (312)
T ss_pred             H
Confidence            3

>PRK08339 short chain dehydrogenase; Provisional

Probab=99.95  E-value=1.9e-26  Score=183.57  Aligned_cols=149  Identities=21%  Similarity=0.347  Sum_probs=125.0

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~  126 (206)
                      ++++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++.... +.++..+.+|++|..  ++.++++. 
T Consensus         4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~-   81 (263)
T PRK08339          4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELK-   81 (263)
T ss_pred             cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHH-
Confidence            45679999999999999999999999999999999999998888887776542 456788999999862  44445543 


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++  +|++|||||....  .++.+.+.++|++++++|+.+++.++++++|.|++++.|+ ||++||.++..+.|..
T Consensus        82 ~~g~--iD~lv~nag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~-Ii~isS~~~~~~~~~~  154 (263)
T PRK08339         82 NIGE--PDIFFFSTGGPKP--GYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGR-IIYSTSVAIKEPIPNI  154 (263)
T ss_pred             hhCC--CcEEEECCCCCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCE-EEEEcCccccCCCCcc
Confidence            3554  6699999998654  3478899999999999999999999999999998887777 9999999988877743

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=99.95  E-value=7.3e-27  Score=173.22  Aligned_cols=146  Identities=25%  Similarity=0.342  Sum_probs=121.7

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC--CchHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG--DLDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~  127 (206)
                      +..|-+++||||++|||+++|++|.+.|-+|++++|+.++++++.++.      ..++...||+.|  +.++.++.+.++
T Consensus         2 k~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~------p~~~t~v~Dv~d~~~~~~lvewLkk~   75 (245)
T COG3967           2 KTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAEN------PEIHTEVCDVADRDSRRELVEWLKKE   75 (245)
T ss_pred             cccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcC------cchheeeecccchhhHHHHHHHHHhh
Confidence            356889999999999999999999999999999999999999877654      345556667765  447788888888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++.++  ++|||||+.....-.-.+...++.++.+++|+.+|+++++.++|+++++..+. ||++||..+..|...+
T Consensus        76 ~P~lN--vliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~-IInVSSGLafvPm~~~  149 (245)
T COG3967          76 YPNLN--VLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEAT-IINVSSGLAFVPMAST  149 (245)
T ss_pred             CCchh--eeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCce-EEEeccccccCccccc
Confidence            88766  99999999876431112445677788999999999999999999999998888 9999999999887643

>PRK07062 short chain dehydrogenase; Provisional

Probab=99.94  E-value=8.6e-26  Score=179.68  Aligned_cols=151  Identities=17%  Similarity=0.284  Sum_probs=129.9

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      .+++||+++||||++|||++++++|+++|++|++++|+.+++++..+++...+++.++..+.+|++|.  +++.++++.+
T Consensus         4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (265)
T PRK07062          4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEA   83 (265)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence            34679999999999999999999999999999999999999888888887765566888999999985  2455666777


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||....  .++.+.+.++|++.+++|+.+++.+++.++|.|++++.|+ ||++||..+..+.|..
T Consensus        84 ~~g~--id~li~~Ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  156 (265)
T PRK07062         84 RFGG--VDMLVNNAGQGRV--STFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAAS-IVCVNSLLALQPEPHM  156 (265)
T ss_pred             hcCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcE-EEEeccccccCCCCCc
Confidence            7775  5599999998654  3478899999999999999999999999999998877777 9999999998877743

>PRK06139 short chain dehydrogenase; Provisional

Probab=99.94  E-value=1.1e-25  Score=184.58  Aligned_cols=148  Identities=23%  Similarity=0.335  Sum_probs=127.7

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.++++++.+++++.  +.++..+.+|++|.  +++.++.+.+.
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~--g~~~~~~~~Dv~d~~~v~~~~~~~~~~   81 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL--GAEVLVVPTDVTDADQVKALATQAASF   81 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence            356899999999999999999999999999999999999999988888763  45677889999975  34555666666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+...  .++.+.+.|++++++++|+.|++.++++++|.|++++.|. ||++||..+..+.|+.
T Consensus        82 ~g~--iD~lVnnAG~~~~--~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~-iV~isS~~~~~~~p~~  153 (330)
T PRK06139         82 GGR--IDVWVNNVGVGAV--GRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGI-FINMISLGGFAAQPYA  153 (330)
T ss_pred             cCC--CCEEEECCCcCCC--CCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCE-EEEEcChhhcCCCCCc
Confidence            665  5599999998765  3488999999999999999999999999999999887787 9999999999888854

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.94  E-value=5.3e-26  Score=183.72  Aligned_cols=144  Identities=28%  Similarity=0.335  Sum_probs=124.3

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      ...+..+++++||||++|||+++|++|+++|++|++.+|+.++.++.+++++...++..+.++.+|+++.  +.++++.+
T Consensus        29 ~~~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~  108 (314)
T KOG1208|consen   29 HGIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEF  108 (314)
T ss_pred             ccccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHH
Confidence            4456789999999999999999999999999999999999999999999999877889999999999985  33444444


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccc
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAEL  197 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~  197 (206)
                      .+..+  .+|++|||||+.....    ..+.|.++.++.+|+.|++.+++.++|.|++...+| ||++||..+
T Consensus       109 ~~~~~--~ldvLInNAGV~~~~~----~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~R-IV~vsS~~~  174 (314)
T KOG1208|consen  109 KKKEG--PLDVLINNAGVMAPPF----SLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSR-IVNVSSILG  174 (314)
T ss_pred             HhcCC--CccEEEeCcccccCCc----ccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCC-EEEEcCccc
Confidence            44444  4669999999997632    667788999999999999999999999998877777 999999886

>PRK07063 short chain dehydrogenase; Provisional

Probab=99.94  E-value=1.6e-25  Score=177.65  Aligned_cols=149  Identities=26%  Similarity=0.339  Sum_probs=127.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.+++++..+++...+.+.++..+.+|+++..  ++.++++.+.+
T Consensus         5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5699999999999999999999999999999999999988888888876434567888999999853  45667777777


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||.....  ++.+.+.++|++++++|+.+++.++++++|.|++++.|+ ||++||..+..+.|..
T Consensus        85 g~--id~li~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  155 (260)
T PRK07063         85 GP--LDVLVNNAGINVFA--DPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGS-IVNIASTHAFKIIPGC  155 (260)
T ss_pred             CC--CcEEEECCCcCCCC--ChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeE-EEEECChhhccCCCCc
Confidence            75  55999999986542  366788999999999999999999999999998777676 9999999988877754

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=99.94  E-value=2.9e-25  Score=174.90  Aligned_cols=149  Identities=20%  Similarity=0.246  Sum_probs=127.6

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      -.+..+|.|+|||+.+|+|+.+|++|.++|++|+..+.+++..+.+..+.+    .++..-+..|++++  +.++.+.+.
T Consensus        24 ~~~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~----s~rl~t~~LDVT~~esi~~a~~~V~   99 (322)
T KOG1610|consen   24 LDSLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK----SPRLRTLQLDVTKPESVKEAAQWVK   99 (322)
T ss_pred             ccccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc----CCcceeEeeccCCHHHHHHHHHHHH
Confidence            344679999999999999999999999999999999988888777776663    55677779999975  366677778


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +.+++..++.+|||||+.... ++.+..+.+++++++++|++|++.++++++|.++ +.+|| |||+||..|..+.|.
T Consensus       100 ~~l~~~gLwglVNNAGi~~~~-g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr-~arGR-vVnvsS~~GR~~~p~  174 (322)
T KOG1610|consen  100 KHLGEDGLWGLVNNAGISGFL-GPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLR-RARGR-VVNVSSVLGRVALPA  174 (322)
T ss_pred             HhcccccceeEEecccccccc-CccccccHHHHHHHHhhhhhhHHHHHHHHHHHHH-hccCe-EEEecccccCccCcc
Confidence            888877799999999987643 5688899999999999999999999999999654 55798 999999999998873

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=99.94  E-value=9.1e-26  Score=166.12  Aligned_cols=148  Identities=24%  Similarity=0.308  Sum_probs=124.2

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++..|.++||||++|||+++++.|+++|++|++.+++.+..++.+..+...   ..-..+.||+++.  ++..++++.+.
T Consensus        11 r~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~---~~h~aF~~DVS~a~~v~~~l~e~~k~   87 (256)
T KOG1200|consen   11 RLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGY---GDHSAFSCDVSKAHDVQNTLEEMEKS   87 (256)
T ss_pred             HHhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCC---CccceeeeccCcHHHHHHHHHHHHHh
Confidence            366899999999999999999999999999999999998888877776432   3345788999975  24446777777


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++.  |+++|||||+..+..  +..++.|+|++.+.+|+.|.|.++|++.+.|...+ .|.+|||+||..|..+.-++
T Consensus        88 ~g~--psvlVncAGItrD~~--Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~GQ  161 (256)
T KOG1200|consen   88 LGT--PSVLVNCAGITRDGL--LLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFGQ  161 (256)
T ss_pred             cCC--CcEEEEcCccccccc--eeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccccc
Confidence            784  669999999998754  88999999999999999999999999999865444 44479999999999988765

>PRK05876 short chain dehydrogenase; Provisional

Probab=99.94  E-value=3.5e-25  Score=177.39  Aligned_cols=147  Identities=20%  Similarity=0.251  Sum_probs=125.0

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||+++|++|+++|++|++++|+.+++++..++++..  +.++..+.+|++|.  +++.++.+.+.+
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   81 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE--GFDVHGVMCDVRHREEVTHLADEAFRLL   81 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            56999999999999999999999999999999999998888888777653  45678889999975  245556666666


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||+...  .++.+.+.+++++++++|+.|++.++++++|.|.+++ .|+ ||++||.++..+.|..
T Consensus        82 g~--id~li~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~-iv~isS~~~~~~~~~~  153 (275)
T PRK05876         82 GH--VDVVFSNAGIVVG--GPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGH-VVFTASFAGLVPNAGL  153 (275)
T ss_pred             CC--CCEEEECCCcCCC--CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCE-EEEeCChhhccCCCCC
Confidence            65  5599999998765  3488899999999999999999999999999998776 455 9999999998887743

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=99.93  E-value=8.6e-25  Score=174.01  Aligned_cols=151  Identities=26%  Similarity=0.381  Sum_probs=124.7

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcC-CceEEEEEEecCCC--chHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYA-KTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      .+++.||+++||||++|||+++|++|++.|++|++++|+.+++++..+++...+. +.++..+.||++++  +++.++..
T Consensus         3 ~~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~   82 (270)
T KOG0725|consen    3 GGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFA   82 (270)
T ss_pred             CccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999998888876543 56789999999965  35666777


Q ss_pred             HHH-hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhH-HHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          125 KEA-IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEG-TTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       125 ~~~-~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g-~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      .++ +++  +|++|||||...... ++++.++|+|++++++|+.| .+.+.+.+.|++.+.+.|. |+++||.++..+.+
T Consensus        83 ~~~~~Gk--idiLvnnag~~~~~~-~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~-I~~~ss~~~~~~~~  158 (270)
T KOG0725|consen   83 VEKFFGK--IDILVNNAGALGLTG-SILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGS-IVNISSVAGVGPGP  158 (270)
T ss_pred             HHHhCCC--CCEEEEcCCcCCCCC-ChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCce-EEEEeccccccCCC
Confidence            777 464  559999999987642 68999999999999999995 6666666666665555555 99999998887643

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.93  E-value=1.1e-24  Score=172.27  Aligned_cols=146  Identities=24%  Similarity=0.317  Sum_probs=118.4

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~  126 (206)
                      +++++|+++||||++|||+++|++|+++|++|++++|+..  ++..+++++  .+.++..+.+|+++..  ++.++++.+
T Consensus         4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (251)
T PRK12481          4 FDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEA--LGRKFHFITADLIQQKDIDSIVSQAVE   79 (251)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHH--cCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence            3467999999999999999999999999999999988643  333344443  2456788999999852  555666666


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC-CceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK-GLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~~iv~isS~~~~~~~~~  203 (206)
                      .+++  +|++|||||+...  .++.+.+.++|++++++|+.+++.++++++|.|++++. |+ ||++||.++..+.+.
T Consensus        80 ~~g~--iD~lv~~ag~~~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~-ii~isS~~~~~~~~~  152 (251)
T PRK12481         80 VMGH--IDILINNAGIIRR--QDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGK-IINIASMLSFQGGIR  152 (251)
T ss_pred             HcCC--CCEEEECCCcCCC--CCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCE-EEEeCChhhcCCCCC
Confidence            6775  5599999998754  34788899999999999999999999999999987654 55 999999998877663

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=99.93  E-value=5.4e-25  Score=177.99  Aligned_cols=150  Identities=16%  Similarity=0.155  Sum_probs=118.3

Q ss_pred             ccccCCcEEEEECC--CChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHh-------cCCc----eEEEEEEec-
Q 028656           48 NLRKYGSWALVTGP--TDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAK-------YAKT----QIKSVVVDF-  113 (206)
Q Consensus        48 ~~~~~~k~vlItGa--s~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~-------~~~~----~~~~~~~d~-  113 (206)
                      .++++||+++||||  ++|||+++|+.|++.|++|++ +|+.++++++...++..       ..+.    ....+.+|+ 
T Consensus         4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~   82 (303)
T PLN02730          4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAV   82 (303)
T ss_pred             CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeeccee
Confidence            34578999999999  899999999999999999999 88888888877666431       0111    135667777 


Q ss_pred             -CC--------------------CchHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHH
Q 028656          114 -SG--------------------DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV  172 (206)
Q Consensus       114 -~~--------------------~~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~  172 (206)
                       ++                    ++++.++.+.+.+++  +|++|||||+......++.+.+.|+|++++++|+.|++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~--iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l  160 (303)
T PLN02730         83 FDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGS--IDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSL  160 (303)
T ss_pred             cCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCC--CCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHH
Confidence             21                    235666777777775  5599999986543234688999999999999999999999


Q ss_pred             HHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          173 TQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       173 ~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +|+++|.|+++  |+ ||++||.++..+.|+
T Consensus       161 ~~~~~p~m~~~--G~-II~isS~a~~~~~p~  188 (303)
T PLN02730        161 LQHFGPIMNPG--GA-SISLTYIASERIIPG  188 (303)
T ss_pred             HHHHHHHHhcC--CE-EEEEechhhcCCCCC
Confidence            99999999653  76 999999999888773

>PRK05872 short chain dehydrogenase; Provisional

Probab=99.93  E-value=1.2e-24  Score=176.10  Aligned_cols=147  Identities=24%  Similarity=0.403  Sum_probs=123.9

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      .+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++..   +.++..+.+|++|.  +++.++++.+
T Consensus         5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~   81 (296)
T PRK05872          5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVE   81 (296)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            446799999999999999999999999999999999999888887776632   45667778999975  2455566666


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+...  .++.+.+.|+|++++++|+.|++.++++++|.|.++ .|+ ||++||.++..+.|.+
T Consensus        82 ~~g~--id~vI~nAG~~~~--~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~-~g~-iv~isS~~~~~~~~~~  153 (296)
T PRK05872         82 RFGG--IDVVVANAGIASG--GSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIER-RGY-VLQVSSLAAFAAAPGM  153 (296)
T ss_pred             HcCC--CCEEEECCCcCCC--cCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCE-EEEEeCHhhcCCCCCc
Confidence            6675  5599999998764  458889999999999999999999999999998765 466 9999999998887754

>PRK07478 short chain dehydrogenase; Provisional

Probab=99.93  E-value=1.6e-24  Score=171.37  Aligned_cols=147  Identities=20%  Similarity=0.256  Sum_probs=123.7

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.++++++.++++..  +.++..+.+|+++.  .++.++++.++
T Consensus         3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (254)
T PRK07478          3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE--GGEAVALAGDVRDEAYAKALVALAVER   80 (254)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            356899999999999999999999999999999999999888888887664  35677889999875  25566777777


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc-cccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM-CSVR  202 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~-~~~~  202 (206)
                      +++  +|++|||||+.... .++.+.+.+++++++++|+.+++.++++++|.|++++.++ ||++||..+. .+.|
T Consensus        81 ~~~--id~li~~ag~~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~-iv~~sS~~~~~~~~~  152 (254)
T PRK07478         81 FGG--LDIAFNNAGTLGEM-GPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGS-LIFTSTFVGHTAGFP  152 (254)
T ss_pred             cCC--CCEEEECCCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCce-EEEEechHhhccCCC
Confidence            775  55999999986432 3477889999999999999999999999999998887777 9999998876 3444

>PRK08862 short chain dehydrogenase; Provisional

Probab=99.93  E-value=2e-24  Score=168.50  Aligned_cols=145  Identities=19%  Similarity=0.204  Sum_probs=120.6

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+.  +.++..+++|+++..  ++.++++.+.
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSAL--TDNVYSFQLKDFSQESIRHLFDAIEQQ   79 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCCeEEEEccCCCHHHHHHHHHHHHHH
Confidence            457999999999999999999999999999999999999999888888664  345778889998752  5566777777


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMC  199 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~  199 (206)
                      ++. ++|++|||||.... ..++.+.+.+++.+.+++|+.+++.+++.++|+|.+++ .|. ||++||..+..
T Consensus        80 ~g~-~iD~li~nag~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~-Iv~isS~~~~~  149 (227)
T PRK08862         80 FNR-APDVLVNNWTSSPL-PSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGV-IVNVISHDDHQ  149 (227)
T ss_pred             hCC-CCCEEEECCccCCC-CCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCC
Confidence            772 35599999986533 24588899999999999999999999999999998765 455 99999977653

>PRK08589 short chain dehydrogenase; Validated

Probab=99.93  E-value=2.5e-24  Score=172.12  Aligned_cols=146  Identities=25%  Similarity=0.386  Sum_probs=122.4

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||+++|++|+++|++|++++|+ +++++..+++.+.  +.++..+.+|+++.  +++.++.+.+.+
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN--GGKAKAYHVDISDEQQVKDFASEIKEQF   80 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            569999999999999999999999999999999999 7777777777653  45678899999975  256667777777


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||+.... .++.+.+.++|++++++|+.|++.++++++|.|++++ |+ ||++||.++..+.|+.
T Consensus        81 g~--id~li~~Ag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~-iv~isS~~~~~~~~~~  151 (272)
T PRK08589         81 GR--VDVLFNNAGVDNAA-GRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GS-IINTSSFSGQAADLYR  151 (272)
T ss_pred             CC--cCEEEECCCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CE-EEEeCchhhcCCCCCC
Confidence            75  55999999986432 3467889999999999999999999999999998664 66 9999999988876643

>PRK05854 short chain dehydrogenase; Provisional

Probab=99.93  E-value=1.2e-24  Score=177.44  Aligned_cols=144  Identities=22%  Similarity=0.245  Sum_probs=120.7

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.++.++..+++.+..++..+.++.+|+++.  ++++++.+.+.
T Consensus        11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~   90 (313)
T PRK05854         11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE   90 (313)
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            4779999999999999999999999999999999999999988888887765566788999999975  34555666666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      +++  +|++|||||+...   +..+.+.+++++++++|+.|++.+++.++|.|.+. .++ ||++||.++..+
T Consensus        91 ~~~--iD~li~nAG~~~~---~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~-~~r-iv~vsS~~~~~~  156 (313)
T PRK05854         91 GRP--IHLLINNAGVMTP---PERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG-RAR-VTSQSSIAARRG  156 (313)
T ss_pred             CCC--ccEEEECCccccC---CccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC-CCC-eEEEechhhcCC
Confidence            564  5699999998753   23456788999999999999999999999988754 567 999999887654

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.93  E-value=1.7e-24  Score=173.32  Aligned_cols=146  Identities=17%  Similarity=0.189  Sum_probs=114.5

Q ss_pred             cCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           51 KYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++|+++||||+  +|||+++|++|+++|++|++++|+.+ .++..+++.+..+. . ..+.+|++|.  +++.++.+.+
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~~~-~-~~~~~Dv~d~~~v~~~~~~i~~   79 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA-LKKRVEPIAQELGS-D-YVYELDVSKPEHFKSLAESLKK   79 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH-HHHHHHHHHHhcCC-c-eEEEecCCCHHHHHHHHHHHHH
Confidence            468999999997  89999999999999999999999853 22333333322222 2 5688999985  3566677777


Q ss_pred             HhcCCCccEEEEeccccCCc--ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPY--ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+..+.  ..++.+.+.++|++++++|+.|++.+++.++|.|.+  .|+ ||++||.++..+.|..
T Consensus        80 ~~g~--iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~--~g~-Iv~isS~~~~~~~~~~  154 (274)
T PRK08415         80 DLGK--IDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLND--GAS-VLTLSYLGGVKYVPHY  154 (274)
T ss_pred             HcCC--CCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhcc--CCc-EEEEecCCCccCCCcc
Confidence            7775  55999999986421  245788999999999999999999999999999854  366 9999999888777643

>PRK05867 short chain dehydrogenase; Provisional

Probab=99.93  E-value=2.4e-24  Score=170.27  Aligned_cols=144  Identities=23%  Similarity=0.358  Sum_probs=122.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+++++..++++..  +.++..+.+|+++.  .++.++++.+.
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS--GGKVVPVCCDVSQHQQVTSMLDQVTAE   83 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            367999999999999999999999999999999999998888888887664  35678889999975  35566777777


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      +++  +|++|||||....  .++.+.+.++|++++++|+.+++.++++++|.|.+++.+++||++||..+..
T Consensus        84 ~g~--id~lv~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~  151 (253)
T PRK05867         84 LGG--IDIAVCNAGIITV--TPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHI  151 (253)
T ss_pred             hCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcC
Confidence            775  5599999998754  3478889999999999999999999999999998776444499999988764

>PRK07791 short chain dehydrogenase; Provisional

Probab=99.93  E-value=1.7e-24  Score=174.42  Aligned_cols=147  Identities=20%  Similarity=0.222  Sum_probs=122.4

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh---------hhHHHHHHHHHHhcCCceEEEEEEecCCCc--hH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP---------DKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DE  119 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~  119 (206)
                      +++|+++||||++|||+++|++|+++|++|++++|+.         +++++..+++...  +.++..+.+|+++..  ++
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~v~~   81 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA--GGEAVANGDDIADWDGAAN   81 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc--CCceEEEeCCCCCHHHHHH
Confidence            5689999999999999999999999999999998876         6677777777653  456778899999852  55


Q ss_pred             HHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC------CCceEEEec
Q 028656          120 GVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK------KGLSMLNIG  193 (206)
Q Consensus       120 ~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~------~g~~iv~is  193 (206)
                      .++.+.+.+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|+++.      .|+ ||++|
T Consensus        82 ~~~~~~~~~g~--id~lv~nAG~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~-Iv~is  156 (286)
T PRK07791         82 LVDAAVETFGG--LDVLVNNAGILRD--RMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDAR-IINTS  156 (286)
T ss_pred             HHHHHHHhcCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcE-EEEeC
Confidence            66777777775  5599999998754  3478899999999999999999999999999997642      245 99999


Q ss_pred             cccccccccCC
Q 028656          194 KAELMCSVRFH  204 (206)
Q Consensus       194 S~~~~~~~~~~  204 (206)
                      |.++..+.|+.
T Consensus       157 S~~~~~~~~~~  167 (286)
T PRK07791        157 SGAGLQGSVGQ  167 (286)
T ss_pred             chhhCcCCCCc
Confidence            99998887754

>PRK07109 short chain dehydrogenase; Provisional

Probab=99.93  E-value=2.4e-24  Score=177.07  Aligned_cols=147  Identities=22%  Similarity=0.360  Sum_probs=127.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.+++++..++++..  +.++..+.+|++|.  +++.++.+.+.+
T Consensus         6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~--g~~~~~v~~Dv~d~~~v~~~~~~~~~~~   83 (334)
T PRK07109          6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA--GGEALAVVADVADAEAVQAAADRAEEEL   83 (334)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc--CCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence            56899999999999999999999999999999999999998888888763  45678899999985  355566677777


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||....  .++.+.+.+++++.+++|+.|++..++.++|.|++++.|+ ||++||..+..+.|.+
T Consensus        84 g~--iD~lInnAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~-iV~isS~~~~~~~~~~  154 (334)
T PRK07109         84 GP--IDTWVNNAMVTVF--GPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGA-IIQVGSALAYRSIPLQ  154 (334)
T ss_pred             CC--CCEEEECCCcCCC--CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcE-EEEeCChhhccCCCcc
Confidence            75  5599999998654  3478899999999999999999999999999998887777 9999999998887754

>PRK09242 tropinone reductase; Provisional

Probab=99.92  E-value=5.3e-24  Score=168.67  Aligned_cols=151  Identities=21%  Similarity=0.372  Sum_probs=129.3

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~  125 (206)
                      .+++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++....++.++..+.+|+++..  ++.++.+.
T Consensus         4 ~~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   83 (257)
T PRK09242          4 RWRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE   83 (257)
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            4567799999999999999999999999999999999999988888888877655678899999999752  55667777


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +.+++  +|++|||||....  .++.+.+.+++++.+++|+.|++.++++++|.|.+++.++ ||++||.++..+.+.
T Consensus        84 ~~~g~--id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-ii~~sS~~~~~~~~~  156 (257)
T PRK09242         84 DHWDG--LHILVNNAGGNIR--KAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSA-IVNIGSVSGLTHVRS  156 (257)
T ss_pred             HHcCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCce-EEEECccccCCCCCC
Confidence            77775  5599999998644  3477889999999999999999999999999998877777 999999988877654

>PLN02253 xanthoxin dehydrogenase

Probab=99.92  E-value=5.7e-24  Score=170.52  Aligned_cols=149  Identities=22%  Similarity=0.284  Sum_probs=123.6

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      .++++|+++||||++|||++++++|+++|++|++++|+.+..++..+++.   .+.++..+.+|++|.  +++.++.+.+
T Consensus        14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~~~   90 (280)
T PLN02253         14 QRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG---GEPNVCFFHCDVTVEDDVSRAVDFTVD   90 (280)
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc---CCCceEEEEeecCCHHHHHHHHHHHHH
Confidence            34679999999999999999999999999999999999877776666552   245688899999975  2555667777


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+++  +|++|||||.......++.+.+.+++++++++|+.|++.++++++|.|.+++.|+ ||++||..+..+.|+
T Consensus        91 ~~g~--id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~-ii~isS~~~~~~~~~  164 (280)
T PLN02253         91 KFGT--LDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGS-IVSLCSVASAIGGLG  164 (280)
T ss_pred             HhCC--CCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCce-EEEecChhhcccCCC
Confidence            7775  5599999998654323477889999999999999999999999999998777777 999999998877654

>PRK07825 short chain dehydrogenase; Provisional

Probab=99.92  E-value=4.4e-24  Score=170.58  Aligned_cols=144  Identities=19%  Similarity=0.258  Sum_probs=122.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      ++++++++||||++|||++++++|+++|++|++++|+.+++++..+++.      .+..+.+|+++..  ++.++.+.+.
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~   75 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG------LVVGGPLDVTDPASFAAFLDAVEAD   75 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------cceEEEccCCCHHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999999988877665542      3567889999752  4555666666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+...  .++.+.+.+++++++++|+.|++.+++.++|.|++++.|+ ||++||.++..+.|..
T Consensus        76 ~~~--id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  147 (273)
T PRK07825         76 LGP--IDVLVNNAGVMPV--GPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGH-VVNVASLAGKIPVPGM  147 (273)
T ss_pred             cCC--CCEEEECCCcCCC--CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCE-EEEEcCccccCCCCCC
Confidence            665  5599999999765  3477889999999999999999999999999999888888 9999999998887754

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=99.92  E-value=4.4e-24  Score=158.44  Aligned_cols=140  Identities=24%  Similarity=0.386  Sum_probs=120.2

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC--hhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN--PDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      |+++||||++|||++++++|+++|+ +|++++|+  .+..+++.+++..  .+.++.++++|+++.  .++.++.+.+..
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKA--PGAKITFIECDLSDPESIRALIEEVIKRF   78 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHH--TTSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence            7899999999999999999999965 78889999  6778888888875  458899999999975  256667777666


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +.  +|++|||||....  +++.+.+.|++++++++|+.+++.+.++++|    ++.+. ||++||..+..+.|+.
T Consensus        79 ~~--ld~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~----~~~g~-iv~~sS~~~~~~~~~~  145 (167)
T PF00106_consen   79 GP--LDILINNAGIFSD--GSLDDLSEEELERVFRVNLFGPFLLAKALLP----QGGGK-IVNISSIAGVRGSPGM  145 (167)
T ss_dssp             SS--ESEEEEECSCTTS--BSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH----HTTEE-EEEEEEGGGTSSSTTB
T ss_pred             cc--ccccccccccccc--cccccccchhhhhccccccceeeeeeehhee----ccccc-eEEecchhhccCCCCC
Confidence            65  5599999999874  5588999999999999999999999999999    44566 9999999999999865

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK06114 short chain dehydrogenase; Provisional

Probab=99.92  E-value=5.8e-24  Score=168.26  Aligned_cols=148  Identities=23%  Similarity=0.352  Sum_probs=123.1

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh-hHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD-KLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERI  124 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~  124 (206)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+.+ .+++..++++..  +.++..+.+|+++..  ++.++++
T Consensus         3 ~~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~i~~~~~~~   80 (254)
T PRK06114          3 LFDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAA--GRRAIQIAADVTSKADLRAAVART   80 (254)
T ss_pred             ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHH
Confidence            45578999999999999999999999999999999999864 456666777653  446778899999752  5556666


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      .+.+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.++ ||++||.++..+.|
T Consensus        81 ~~~~g~--id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~isS~~~~~~~~  153 (254)
T PRK06114         81 EAELGA--LTLAVNAAGIANA--NPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGS-IVNIASMSGIIVNR  153 (254)
T ss_pred             HHHcCC--CCEEEECCCCCCC--CChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcE-EEEECchhhcCCCC
Confidence            677775  5599999998754  3478889999999999999999999999999998877777 99999998887655

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.92  E-value=3.4e-24  Score=171.36  Aligned_cols=146  Identities=15%  Similarity=0.143  Sum_probs=115.2

Q ss_pred             cCCcEEEEECCCC--hHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           51 KYGSWALVTGPTD--GIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGas~--giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++|+++||||++  |||+++|++|+++|++|++.+|+.+..++. +++.+.. +. ...+.+|++|.  +++.++++.+
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~-~~~~~~~-g~-~~~~~~Dv~d~~~v~~~~~~~~~   81 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRV-KPLAESL-GS-DFVLPCDVEDIASVDAVFEALEK   81 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHH-HHHHHhc-CC-ceEEeCCCCCHHHHHHHHHHHHH
Confidence            5699999999996  999999999999999999999986443333 3332221 22 24678999975  3667777777


Q ss_pred             HhcCCCccEEEEeccccCCc--ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPY--ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+....  ..++.+.+.++|++.+++|+.+++.++|+++|+|.+  .|+ ||++||.++..+.|.+
T Consensus        82 ~~g~--iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~--~G~-Iv~isS~~~~~~~~~~  156 (271)
T PRK06505         82 KWGK--LDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPD--GGS-MLTLTYGGSTRVMPNY  156 (271)
T ss_pred             HhCC--CCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhcc--Cce-EEEEcCCCccccCCcc
Confidence            7875  55999999986431  135788999999999999999999999999999963  366 9999999988877743

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.92  E-value=3.5e-24  Score=169.54  Aligned_cols=145  Identities=11%  Similarity=0.093  Sum_probs=116.6

Q ss_pred             ccCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           50 RKYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        50 ~~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      .++||+++||||+  +|||+++|++|+++|++|++++|+. +.++..+++.    +..+..+++|+++.  +++.++.+.
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~~   78 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKLV----DEEDLLVECDVASDESIERAFATIK   78 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhhc----cCceeEEeCCCCCHHHHHHHHHHHH
Confidence            3579999999999  8999999999999999999999984 4443333332    23577889999975  356667777


Q ss_pred             HHhcCCCccEEEEeccccCCc--ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          126 EAIEGLDVGVLINNVGISYPY--ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +.+++  +|++|||||+..+.  ..++.+.+.|+|++.+++|+.+++.++++++|+|.+  .|+ ||++||.++..+.|.
T Consensus        79 ~~~g~--iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~--~g~-Iv~iss~~~~~~~~~  153 (252)
T PRK06079         79 ERVGK--IDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNP--GAS-IVTLTYFGSERAIPN  153 (252)
T ss_pred             HHhCC--CCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhccc--Cce-EEEEeccCccccCCc
Confidence            77775  55999999986531  245788999999999999999999999999998853  466 999999998887774


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      +
T Consensus       154 ~  154 (252)
T PRK06079        154 Y  154 (252)
T ss_pred             c
Confidence            3

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=99.92  E-value=9.1e-24  Score=167.04  Aligned_cols=148  Identities=24%  Similarity=0.329  Sum_probs=124.3

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~  126 (206)
                      +++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++...  +.++..+.+|+++..  ++.++.+.+
T Consensus         5 ~~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   82 (254)
T PRK08085          5 FSLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE--GIKAHAAPFNVTHKQEVEAAIEHIEK   82 (254)
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEecCCCCHHHHHHHHHHHHH
Confidence            3467999999999999999999999999999999999998888887777653  456778899999752  455566666


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+++  +|++|||||....  .++.+.+.++|++++++|+.+++.+++++.|.|++++.++ ||++||..+..+.+.
T Consensus        83 ~~~~--id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~isS~~~~~~~~~  154 (254)
T PRK08085         83 DIGP--IDVLINNAGIQRR--HPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGK-IINICSMQSELGRDT  154 (254)
T ss_pred             hcCC--CCEEEECCCcCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcE-EEEEccchhccCCCC
Confidence            6665  5599999998654  3478889999999999999999999999999998777677 999999888776654

>PRK06125 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1.4e-23  Score=166.40  Aligned_cols=147  Identities=25%  Similarity=0.336  Sum_probs=124.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      +++++|+++||||++|||++++++|+++|++|++++|+.++.++..+++.... +.++....+|+++.  +.++.+.+.+
T Consensus         3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~--~~~~~~~~~~   79 (259)
T PRK06125          3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSP--EAREQLAAEA   79 (259)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCH--HHHHHHHHHh
Confidence            34679999999999999999999999999999999999988888877776542 45678889999986  5566666666


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++  +|++|||||+...  .++.+.+.++|++++++|+.+++.++++++|.|.+++.|+ ||++||..+..+.+.
T Consensus        80 g~--id~lv~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~-iv~iss~~~~~~~~~  149 (259)
T PRK06125         80 GD--IDILVNNAGAIPG--GGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGV-IVNVIGAAGENPDAD  149 (259)
T ss_pred             CC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcE-EEEecCccccCCCCC
Confidence            65  5599999998754  4588999999999999999999999999999998877777 999999988776553

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.92  E-value=9.4e-24  Score=167.63  Aligned_cols=148  Identities=15%  Similarity=0.111  Sum_probs=114.8

Q ss_pred             ccccCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHH
Q 028656           48 NLRKYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVER  123 (206)
Q Consensus        48 ~~~~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~  123 (206)
                      ..+++||+++||||+  +|||+++|++|+++|++|++++|+.+..+. .+++.+..+  ....+++|+++.  +++.++.
T Consensus         5 ~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~-~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~   81 (258)
T PRK07533          5 LLPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPY-VEPLAEELD--APIFLPLDVREPGQLEAVFAR   81 (258)
T ss_pred             ccccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHH-HHHHHHhhc--cceEEecCcCCHHHHHHHHHH
Confidence            344679999999998  599999999999999999999998643222 223322211  245788999975  3566677


Q ss_pred             HHHHhcCCCccEEEEeccccCCc--ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          124 IKEAIEGLDVGVLINNVGISYPY--ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      +.+.+++  +|++|||||+....  ..++.+.+.++|++++++|+.|++.+++.++|.|.  +.|+ ||++||..+..+.
T Consensus        82 ~~~~~g~--ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~--~~g~-Ii~iss~~~~~~~  156 (258)
T PRK07533         82 IAEEWGR--LDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMT--NGGS-LLTMSYYGAEKVV  156 (258)
T ss_pred             HHHHcCC--CCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhc--cCCE-EEEEeccccccCC
Confidence            7777775  55999999986431  23577889999999999999999999999999994  2466 9999999887776


Q ss_pred             cC
Q 028656          202 RF  203 (206)
Q Consensus       202 ~~  203 (206)
                      |.
T Consensus       157 ~~  158 (258)
T PRK07533        157 EN  158 (258)
T ss_pred             cc
Confidence            64

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=99.92  E-value=5.8e-24  Score=168.86  Aligned_cols=148  Identities=16%  Similarity=0.173  Sum_probs=117.4

Q ss_pred             ccCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcChh--hHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHH
Q 028656           50 RKYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNPD--KLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVER  123 (206)
Q Consensus        50 ~~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~  123 (206)
                      +++||+++||||+  +|||+++|++|+++|++|++.+|+.+  +.++..+++.+..  .....+.+|++|.  +++.++.
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~   80 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPL--NPSLFLPCDVQDDAQIEETFET   80 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhcc--CcceEeecCcCCHHHHHHHHHH
Confidence            3569999999986  89999999999999999999877643  3445555555432  3456788999975  3566677


Q ss_pred             HHHHhcCCCccEEEEeccccCC--cccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          124 IKEAIEGLDVGVLINNVGISYP--YARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~--~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      +.+.+++  +|++|||||+...  ...++.+.+.++|++++++|+.|++.++++++|.|.+  .|+ ||++||..+..+.
T Consensus        81 ~~~~~g~--iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~--~g~-Iv~isS~~~~~~~  155 (258)
T PRK07370         81 IKQKWGK--LDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSE--GGS-IVTLTYLGGVRAI  155 (258)
T ss_pred             HHHHcCC--CCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhh--CCe-EEEEeccccccCC
Confidence            7777775  5599999998642  1235788899999999999999999999999999864  366 9999999998877


Q ss_pred             cCC
Q 028656          202 RFH  204 (206)
Q Consensus       202 ~~~  204 (206)
                      |.+
T Consensus       156 ~~~  158 (258)
T PRK07370        156 PNY  158 (258)
T ss_pred             ccc
Confidence            754

>PRK06194 hypothetical protein; Provisional

Probab=99.92  E-value=1.1e-23  Score=169.30  Aligned_cols=147  Identities=24%  Similarity=0.287  Sum_probs=123.4

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++...  +.++..+.+|++|.  .++.++.+.+.+
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~   81 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALERF   81 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999999999999999988888877777553  45788899999975  245556666666


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC------CceEEEecccccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK------GLSMLNIGKAELMCSVR  202 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~------g~~iv~isS~~~~~~~~  202 (206)
                      ++  +|++|||||....  .++.+.+.+++++++++|+.|++.++++++|.|++++.      ++ ||++||.++..+.|
T Consensus        82 g~--id~vi~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~-iv~~sS~~~~~~~~  156 (287)
T PRK06194         82 GA--VHLLFNNAGVGAG--GLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGH-IVNTASMAGLLAPP  156 (287)
T ss_pred             CC--CCEEEECCCCCCC--CCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeE-EEEeCChhhccCCC
Confidence            65  5599999999765  34778899999999999999999999999999987765      56 99999999988776


Q ss_pred             CC
Q 028656          203 FH  204 (206)
Q Consensus       203 ~~  204 (206)
                      ..
T Consensus       157 ~~  158 (287)
T PRK06194        157 AM  158 (287)
T ss_pred             CC
Confidence            43

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=99.92  E-value=1.6e-23  Score=166.73  Aligned_cols=149  Identities=23%  Similarity=0.314  Sum_probs=127.1

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~  125 (206)
                      .+++++|+++||||++|||++++++|+++|++|++++|+.+++++..++++..  +.++..+.+|+++..  ++.++++.
T Consensus         5 ~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~   82 (265)
T PRK07097          5 LFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYREL--GIEAHGYVCDVTDEDGVQAMVSQIE   82 (265)
T ss_pred             ccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999998888877777653  456888999999753  55666776


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +.+++  +|++|||||+...  .++.+.+.+++++++++|+.|++.+++.++|.|++++.++ ||++||..+..+.+.
T Consensus        83 ~~~~~--id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~  155 (265)
T PRK07097         83 KEVGV--IDILVNNAGIIKR--IPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGK-IINICSMMSELGRET  155 (265)
T ss_pred             HhCCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcE-EEEEcCccccCCCCC
Confidence            77764  5699999998765  3478899999999999999999999999999998877777 999999888776653

>PRK08303 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1e-23  Score=171.22  Aligned_cols=144  Identities=22%  Similarity=0.343  Sum_probs=116.4

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh----------hhHHHHHHHHHHhcCCceEEEEEEecCCC--ch
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP----------DKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LD  118 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~----------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~  118 (206)
                      ++||+++||||++|||+++|++|++.|++|++++|+.          ++++++.+++...  +.++..+.+|+++.  ++
T Consensus         6 l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~v~   83 (305)
T PRK08303          6 LRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAA--GGRGIAVQVDHLVPEQVR   83 (305)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhc--CCceEEEEcCCCCHHHHH
Confidence            5799999999999999999999999999999999984          4556666666543  44577889999975  35


Q ss_pred             HHHHHHHHHhcCCCccEEEEec-cccC--CcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccc
Q 028656          119 EGVERIKEAIEGLDVGVLINNV-GISY--PYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKA  195 (206)
Q Consensus       119 ~~~~~~~~~~~~~~id~lvnnA-g~~~--~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~  195 (206)
                      +.++++.+.+++  +|++|||| |...  ....++.+.+.++|++++++|+.+++.++++++|.|.+++.|+ ||++||.
T Consensus        84 ~~~~~~~~~~g~--iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~-IV~isS~  160 (305)
T PRK08303         84 ALVERIDREQGR--LDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGL-VVEITDG  160 (305)
T ss_pred             HHHHHHHHHcCC--ccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcE-EEEECCc
Confidence            666777777775  55999999 8532  1123577888999999999999999999999999998776676 9999997


Q ss_pred             cccc
Q 028656          196 ELMC  199 (206)
Q Consensus       196 ~~~~  199 (206)
                      .+..
T Consensus       161 ~~~~  164 (305)
T PRK08303        161 TAEY  164 (305)
T ss_pred             cccc
Confidence            6643

>PRK07677 short chain dehydrogenase; Provisional

Probab=99.92  E-value=2e-23  Score=164.99  Aligned_cols=144  Identities=24%  Similarity=0.315  Sum_probs=120.4

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~  130 (206)
                      ||+++||||++|||++++++|+++|++|++++|+.+++++..+++...  +.++..+++|++++  .++.++++.+.+++
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF--PGQVLTVQMDVRNPEDVQKMVEQIDEKFGR   78 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            689999999999999999999999999999999998888877777653  35688899999975  25556666666775


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~  203 (206)
                        +|++|||||....  .++.+.+.++|++++++|+.|++.++++++|.|.+++ .|+ ||++||..+..+.+.
T Consensus        79 --id~lI~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~-ii~isS~~~~~~~~~  147 (252)
T PRK07677         79 --IDALINNAAGNFI--CPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGN-IINMVATYAWDAGPG  147 (252)
T ss_pred             --ccEEEECCCCCCC--CCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEE-EEEEcChhhccCCCC
Confidence              5599999997543  3477899999999999999999999999999987654 455 999999998876653

>PRK06398 aldose dehydrogenase; Validated

Probab=99.92  E-value=8.6e-24  Score=167.80  Aligned_cols=136  Identities=26%  Similarity=0.413  Sum_probs=115.5

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      ++||+++||||++|||+++|++|+++|++|++++|+.+..             ..+..+.+|+++.  +++.++++.+.+
T Consensus         4 l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~-------------~~~~~~~~D~~~~~~i~~~~~~~~~~~   70 (258)
T PRK06398          4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY-------------NDVDYFKVDVSNKEQVIKGIDYVISKY   70 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc-------------CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            5699999999999999999999999999999999986431             2467889999975  355667777777


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|+|++++.++ ||++||..+..+.|.+
T Consensus        71 ~~--id~li~~Ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  141 (258)
T PRK06398         71 GR--IDILVNNAGIESY--GAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGV-IINIASVQSFAVTRNA  141 (258)
T ss_pred             CC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeE-EEEeCcchhccCCCCC
Confidence            75  5599999998654  4588899999999999999999999999999998877777 9999999998877643

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.92  E-value=1.4e-23  Score=166.69  Aligned_cols=151  Identities=19%  Similarity=0.269  Sum_probs=122.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-ChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++++|+++||||++|||++++++|+++|++|++++| +.+.+++..++++.. .+.++..+++|++|.  +++.++.+.+
T Consensus         5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~   83 (260)
T PRK08416          5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQK-YGIKAKAYPLNILEPETYKELFKKIDE   83 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999999999999998875 566677776666543 245788999999975  3556666666


Q ss_pred             HhcCCCccEEEEeccccCC----cccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          127 AIEGLDVGVLINNVGISYP----YARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~----~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      .+++  +|++|||||+...    ...++.+.+.+++++.+++|+.+++.+++.++|.|.+++.|+ ||++||..+..+.|
T Consensus        84 ~~g~--id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~  160 (260)
T PRK08416         84 DFDR--VDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGS-IISLSSTGNLVYIE  160 (260)
T ss_pred             hcCC--ccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEE-EEEEeccccccCCC
Confidence            6765  5599999987532    123577888999999999999999999999999998776676 99999998877766


Q ss_pred             CC
Q 028656          203 FH  204 (206)
Q Consensus       203 ~~  204 (206)
                      .+
T Consensus       161 ~~  162 (260)
T PRK08416        161 NY  162 (260)
T ss_pred             Cc
Confidence            43

>PRK05717 oxidoreductase; Validated

Probab=99.92  E-value=1.7e-23  Score=165.65  Aligned_cols=149  Identities=20%  Similarity=0.289  Sum_probs=121.7

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERI  124 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~  124 (206)
                      ++..++||+++||||++|||+++|++|+++|++|++++|+.++.++..+++     +.++.++.+|+++..  ++.++++
T Consensus         4 ~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~   78 (255)
T PRK05717          4 PNPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL-----GENAWFIAMDVADEAQVAAGVAEV   78 (255)
T ss_pred             CCcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHH
Confidence            456677999999999999999999999999999999999887766554433     345778899999852  4455667


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+.+++  +|++|||||...+...++.+.+.++|++.+++|+.|++.+++++.|.|.++ .++ ||++||..+..+.|..
T Consensus        79 ~~~~g~--id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~g~-ii~~sS~~~~~~~~~~  154 (255)
T PRK05717         79 LGQFGR--LDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAH-NGA-IVNLASTRARQSEPDT  154 (255)
T ss_pred             HHHhCC--CCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CcE-EEEEcchhhcCCCCCC
Confidence            776764  569999999875433457788999999999999999999999999988654 366 9999999988877643

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.92  E-value=1.9e-23  Score=165.61  Aligned_cols=147  Identities=22%  Similarity=0.349  Sum_probs=123.0

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~  126 (206)
                      .++++|+++||||++|||++++++|+++|++|++++|+ ++.++..+.+...  +.++..+.+|+++..  ++.++++.+
T Consensus        11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~~~~~~~~   87 (258)
T PRK06935         11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE--GRKVTFVQVDLTKPESAEKVVKEALE   87 (258)
T ss_pred             ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            45779999999999999999999999999999999998 5566666666543  456788999999752  456677777


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+++  +|++|||||....  .++.+.+.++|++.+++|+.+++.++++++|.|++++.|+ ||++||..+..+.|.
T Consensus        88 ~~g~--id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~  159 (258)
T PRK06935         88 EFGK--IDILVNNAGTIRR--APLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGK-IINIASMLSFQGGKF  159 (258)
T ss_pred             HcCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeE-EEEECCHHhccCCCC
Confidence            7775  5599999998754  3477889999999999999999999999999998887777 999999988877664

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.91  E-value=1.3e-23  Score=166.75  Aligned_cols=146  Identities=16%  Similarity=0.134  Sum_probs=116.0

Q ss_pred             ccCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcCh---hhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHH
Q 028656           50 RKYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNP---DKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVE  122 (206)
Q Consensus        50 ~~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~  122 (206)
                      +++||+++||||+  +|||+++|++|+++|++|++++|+.   ++++++.+++    .+.++..+.+|++|.  +++.++
T Consensus         4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~d~~~v~~~~~   79 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTL----EGQESLLLPCDVTSDEEITACFE   79 (257)
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHc----CCCceEEEecCCCCHHHHHHHHH
Confidence            4679999999997  8999999999999999999998764   3334333332    245677889999985  356667


Q ss_pred             HHHHHhcCCCccEEEEeccccCCc--ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          123 RIKEAIEGLDVGVLINNVGISYPY--ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       123 ~~~~~~~~~~id~lvnnAg~~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      ++.+++++  +|++|||||+....  ..++.+.+.++|++.+++|+.+++.++++++|.|.+  .|+ ||++||.++..+
T Consensus        80 ~~~~~~g~--ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~g~-Iv~isS~~~~~~  154 (257)
T PRK08594         80 TIKEEVGV--IHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTE--GGS-IVTLTYLGGERV  154 (257)
T ss_pred             HHHHhCCC--ccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhccc--Cce-EEEEcccCCccC
Confidence            77777775  55999999986421  235778899999999999999999999999998853  466 999999999887


Q ss_pred             ccCC
Q 028656          201 VRFH  204 (206)
Q Consensus       201 ~~~~  204 (206)
                      .|..
T Consensus       155 ~~~~  158 (257)
T PRK08594        155 VQNY  158 (257)
T ss_pred             CCCC
Confidence            7743

>PRK05599 hypothetical protein; Provisional

Probab=99.91  E-value=1.7e-23  Score=164.97  Aligned_cols=144  Identities=15%  Similarity=0.174  Sum_probs=119.0

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhcCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIEGL  131 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~  131 (206)
                      ++++||||++|||+++|++|+ +|++|++++|+.++++++.+++++.+ ...+..+.+|++|.  +++.++++.+.+++ 
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~-   77 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRG-ATSVHVLSFDAQDLDTHRELVKQTQELAGE-   77 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcc-CCceEEEEcccCCHHHHHHHHHHHHHhcCC-
Confidence            479999999999999999999 59999999999999999988887643 33577889999985  35566677766665 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccCC
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~~  204 (206)
                       +|++|||||+....  +..+.+.+++++++++|+.+++.+++.++|.|.+++ +|+ ||++||.++..+.|.+
T Consensus        78 -id~lv~nag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~-Iv~isS~~~~~~~~~~  147 (246)
T PRK05599         78 -ISLAVVAFGILGDQ--ERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAA-IVAFSSIAGWRARRAN  147 (246)
T ss_pred             -CCEEEEecCcCCCc--hhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCE-EEEEeccccccCCcCC
Confidence             55999999986543  255677788889999999999999999999998764 466 9999999998887754

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.91  E-value=1.9e-23  Score=166.02  Aligned_cols=146  Identities=12%  Similarity=0.108  Sum_probs=115.1

Q ss_pred             cCCcEEEEECCCC--hHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           51 KYGSWALVTGPTD--GIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGas~--giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++||+++||||++  |||+++|++|+++|++|++.+|+. +.++..+++.+.. +. ...+.+|++|.  +++.++.+.+
T Consensus         6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~~~-g~-~~~~~~Dv~~~~~v~~~~~~~~~   82 (260)
T PRK06603          6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAEEI-GC-NFVSELDVTNPKSISNLFDDIKE   82 (260)
T ss_pred             cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHHhc-CC-ceEEEccCCCHHHHHHHHHHHHH
Confidence            5689999999997  999999999999999999999884 4444455554432 22 24578999985  3666677777


Q ss_pred             HhcCCCccEEEEeccccCCc--ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPY--ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++  +|++|||||+....  ..++.+.+.++|++.+++|+.+++.++++++|.|.+  .|+ ||++||.++..+.|..
T Consensus        83 ~~g~--iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~--~G~-Iv~isS~~~~~~~~~~  157 (260)
T PRK06603         83 KWGS--FDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHD--GGS-IVTLTYYGAEKVIPNY  157 (260)
T ss_pred             HcCC--ccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc--Cce-EEEEecCccccCCCcc
Confidence            7775  55999999986421  235778899999999999999999999999998853  466 9999999888777643

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.91  E-value=2.7e-23  Score=163.57  Aligned_cols=146  Identities=21%  Similarity=0.354  Sum_probs=124.6

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC--
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL--  131 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--  131 (206)
                      ++++|||||+|||+++|+++..+|++|.++.|+..++++++++++-......+.+..+|+.|-  +.+..+.+...+.  
T Consensus        34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y--~~v~~~~~~l~~~~~  111 (331)
T KOG1210|consen   34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDY--DSVSKVIEELRDLEG  111 (331)
T ss_pred             ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccH--HHHHHHHhhhhhccC
Confidence            799999999999999999999999999999999999999999997654444477888999654  3444444444221  


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccCC
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++|.++||||...++.  |++.+.++++..|++|++|+++++++.+|.|+++. .|+ |+.+||.+|..+.++.
T Consensus       112 ~~d~l~~cAG~~v~g~--f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~-I~~vsS~~a~~~i~Gy  182 (331)
T KOG1210|consen  112 PIDNLFCCAGVAVPGL--FEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGR-IILVSSQLAMLGIYGY  182 (331)
T ss_pred             CcceEEEecCcccccc--cccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcE-EEEehhhhhhcCcccc
Confidence            4779999999998754  99999999999999999999999999999998887 565 9999999999998865

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=99.91  E-value=2.6e-23  Score=166.57  Aligned_cols=152  Identities=25%  Similarity=0.341  Sum_probs=126.2

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~  125 (206)
                      .+++++|+++||||++|||++++++|+++|++|++++|+.+..++..+++...  +.++..+.+|+++..  +..++.+.
T Consensus         5 ~~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~   82 (278)
T PRK08277          5 LFSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA--GGEALAVKADVLDKESLEQARQQIL   82 (278)
T ss_pred             eeccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHH
Confidence            34577999999999999999999999999999999999988888887777653  456888999999752  45556666


Q ss_pred             HHhcCCCccEEEEeccccCCcc-------------cccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEe
Q 028656          126 EAIEGLDVGVLINNVGISYPYA-------------RFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNI  192 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~-------------~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~i  192 (206)
                      +.+++  +|++|||||...+..             .++.+.+.++|++.+++|+.+++.+++.++|.|++++.++ ||++
T Consensus        83 ~~~g~--id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~-ii~i  159 (278)
T PRK08277         83 EDFGP--CDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGN-IINI  159 (278)
T ss_pred             HHcCC--CCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcE-EEEE
Confidence            66775  559999999754321             2467888999999999999999999999999998877777 9999


Q ss_pred             ccccccccccCC
Q 028656          193 GKAELMCSVRFH  204 (206)
Q Consensus       193 sS~~~~~~~~~~  204 (206)
                      ||..+..+.|..
T Consensus       160 sS~~~~~~~~~~  171 (278)
T PRK08277        160 SSMNAFTPLTKV  171 (278)
T ss_pred             ccchhcCCCCCC
Confidence            999998877643

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=99.91  E-value=3.1e-23  Score=164.05  Aligned_cols=148  Identities=25%  Similarity=0.412  Sum_probs=124.9

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++.+|+.++.++..++++..  +.++..+.+|+++..  ++.++.+.+.
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ--GLSAHALAFDVTDHDAVRAAIDAFEAE   84 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            467999999999999999999999999999999999998888777777653  456888999999852  4555666666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||....  .++.+.+.+++++++++|+.+++.+++++.|.|.+++.|+ ||++||..+..+.|..
T Consensus        85 ~~~--~d~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~-iv~iss~~~~~~~~~~  156 (255)
T PRK07523         85 IGP--IDILVNNAGMQFR--TPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGK-IINIASVQSALARPGI  156 (255)
T ss_pred             cCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeE-EEEEccchhccCCCCC
Confidence            665  5599999998754  4578889999999999999999999999999998877777 9999999887776643

>PRK05866 short chain dehydrogenase; Provisional

Probab=99.91  E-value=3.6e-23  Score=167.23  Aligned_cols=147  Identities=29%  Similarity=0.404  Sum_probs=119.9

Q ss_pred             CcccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHH
Q 028656           46 AKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVER  123 (206)
Q Consensus        46 ~~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~  123 (206)
                      ++...+.+|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...  +.++..+.+|++|.  +++.++.
T Consensus        33 ~~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~  110 (293)
T PRK05866         33 RQPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA--GGDAMAVPCDLSDLDAVDALVAD  110 (293)
T ss_pred             CCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHH
Confidence            3445578999999999999999999999999999999999999888888877653  44677889999975  2455566


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccC--CHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEV--DQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~--~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      +.+.+++  +|++|||||+....  ++.+.  +.+++++.+++|+.|++.++++++|.|++++.++ ||++||.++..
T Consensus       111 ~~~~~g~--id~li~~AG~~~~~--~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~  183 (293)
T PRK05866        111 VEKRIGG--VDILINNAGRSIRR--PLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGH-IINVATWGVLS  183 (293)
T ss_pred             HHHHcCC--CCEEEECCCCCCCc--chhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcE-EEEECChhhcC
Confidence            6666665  56999999987643  24442  4578899999999999999999999998887787 99999976654

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=99.91  E-value=5.1e-24  Score=160.47  Aligned_cols=142  Identities=24%  Similarity=0.335  Sum_probs=122.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||.+++|||.||||++++++|+++|..+.+++.+.|..+ ...++++.+|..++.+++||+++.  .++.++++...
T Consensus         2 ~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~-a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~   80 (261)
T KOG4169|consen    2 DLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPE-AIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILAT   80 (261)
T ss_pred             cccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHH-HHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHH
Confidence            466999999999999999999999999999888888877744 455678888999999999999983  36777888888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC--CCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK--KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++.  +|++||+||+..+          .+|++++.+|+.|.++-+...+|+|.+++  .|+-|||+||+.|..|.|-.
T Consensus        81 fg~--iDIlINgAGi~~d----------kd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~p~~  147 (261)
T KOG4169|consen   81 FGT--IDILINGAGILDD----------KDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPVF  147 (261)
T ss_pred             hCc--eEEEEcccccccc----------hhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCccccc
Confidence            886  4599999998753          34899999999999999999999998876  45569999999999999843

>PRK08251 short chain dehydrogenase; Provisional

Probab=99.91  E-value=4.6e-23  Score=162.32  Aligned_cols=146  Identities=18%  Similarity=0.258  Sum_probs=125.2

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~  130 (206)
                      +|+++||||++|||++++++|+++|++|++++|+.++.+++.+++....++.++..+++|+++..  ++.++++.+.+++
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999999988888887776656778899999999852  4555666666665


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                        +|++|||||+....  ++.+.+.+.+++.+++|+.+++.+++.++|.|.+.+.++ ||++||..+..+.|.
T Consensus        82 --id~vi~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~  149 (248)
T PRK08251         82 --LDRVIVNAGIGKGA--RLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGH-LVLISSVSAVRGLPG  149 (248)
T ss_pred             --CCEEEECCCcCCCC--CcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCe-EEEEeccccccCCCC
Confidence              55999999997653  366778889999999999999999999999998877777 999999998887764

>PRK08265 short chain dehydrogenase; Provisional

Probab=99.91  E-value=3.2e-23  Score=164.73  Aligned_cols=142  Identities=20%  Similarity=0.235  Sum_probs=117.9

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.+++++..+++     +.++..+.+|+++..  ++.++.+.+.+
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVARF   78 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence            56899999999999999999999999999999999988777766554     346788899999853  55667777777


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||......   .+.+.++|++.+++|+.+++.++++++|.|+ ++.|+ ||++||.++..+.|..
T Consensus        79 g~--id~lv~~ag~~~~~~---~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~g~-ii~isS~~~~~~~~~~  147 (261)
T PRK08265         79 GR--VDILVNLACTYLDDG---LASSRADWLAALDVNLVSAAMLAQAAHPHLA-RGGGA-IVNFTSISAKFAQTGR  147 (261)
T ss_pred             CC--CCEEEECCCCCCCCc---CcCCHHHHHHHHhHhhHHHHHHHHHHHHHHh-cCCcE-EEEECchhhccCCCCC
Confidence            75  559999999865422   3568899999999999999999999999987 55566 9999999988877643

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.91  E-value=2.3e-23  Score=165.71  Aligned_cols=147  Identities=15%  Similarity=0.202  Sum_probs=114.1

Q ss_pred             cCCcEEEEECC--CChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           51 KYGSWALVTGP--TDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGa--s~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++|+++||||  ++|||+++|++|+++|++|++.+|+. +.++..+++....+  ....+.+|++|.  +++.++.+.+
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~   80 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVD-KLEERVRKMAAELD--SELVFRCDVASDDEINQVFADLGK   80 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHhccC--CceEEECCCCCHHHHHHHHHHHHH
Confidence            56999999997  67999999999999999999988864 34444444543322  245688999975  3666777777


Q ss_pred             HhcCCCccEEEEeccccCCcc--c-ccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYA--R-FFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~--~-~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+++  +|++|||||+.....  . .+++.+.++|++.+++|+.++++++++++|.|.++ .|+ ||++||.++..+.|+
T Consensus        81 ~~g~--iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~-~g~-Iv~iss~~~~~~~~~  156 (261)
T PRK08690         81 HWDG--LDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGR-NSA-IVALSYLGAVRAIPN  156 (261)
T ss_pred             HhCC--CcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhc-CcE-EEEEcccccccCCCC
Confidence            7775  559999999875321  1 24567889999999999999999999999988644 466 999999998877774


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      .
T Consensus       157 ~  157 (261)
T PRK08690        157 Y  157 (261)
T ss_pred             c
Confidence            3

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=99.91  E-value=5.3e-23  Score=163.11  Aligned_cols=143  Identities=28%  Similarity=0.378  Sum_probs=116.6

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+. ..++..+++...  +.++..+.+|+++.  .++.++++.+.
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE-LVHEVAAELRAA--GGEALALTADLETYAGAQAAMAAAVEA   81 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch-HHHHHHHHHHhc--CCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            36699999999999999999999999999999999985 344555555442  45677889999975  24556666666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      +++  +|++|||||.... ..++.+.+.+++++.+++|+.+++.+++.++|.|++++.++ ||++||..+..
T Consensus        82 ~~~--id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~-iv~~sS~~~~~  149 (260)
T PRK12823         82 FGR--IDVLINNVGGTIW-AKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGA-IVNVSSIATRG  149 (260)
T ss_pred             cCC--CeEEEECCccccC-CCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCe-EEEEcCccccC
Confidence            665  5699999996532 24578899999999999999999999999999998877777 99999987653

>PRK07035 short chain dehydrogenase; Provisional

Probab=99.91  E-value=6.5e-23  Score=161.89  Aligned_cols=149  Identities=22%  Similarity=0.289  Sum_probs=124.7

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~  126 (206)
                      +++++|+++||||++|||++++++|+++|++|++++|+.++++++.+++.+.  +.....+++|+++..  ++.++++.+
T Consensus         4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (252)
T PRK07035          4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA--GGKAEALACHIGEMEQIDALFAHIRE   81 (252)
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4577999999999999999999999999999999999998888888877653  345778899999752  455666777


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+++  +|++|||||.... ..++.+.+.+++++++++|+.+++.++++++|+|++++.++ |+++||..+..+.|+
T Consensus        82 ~~~~--id~li~~ag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~  154 (252)
T PRK07035         82 RHGR--LDILVNNAAANPY-FGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGS-IVNVASVNGVSPGDF  154 (252)
T ss_pred             HcCC--CCEEEECCCcCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcE-EEEECchhhcCCCCC
Confidence            7775  5599999997532 23467889999999999999999999999999998777777 999999988877664

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=99.91  E-value=5.2e-23  Score=162.79  Aligned_cols=148  Identities=19%  Similarity=0.248  Sum_probs=118.9

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      .++++||+++||||++|||++++++|+++|++|++++++..  ++..+++...  +.++..+++|+++.  .++.++++.
T Consensus         5 ~~~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~   80 (253)
T PRK08993          5 AFSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTAL--GRRFLSLTADLRKIDGIPALLERAV   80 (253)
T ss_pred             ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHH
Confidence            34577999999999999999999999999999998887542  3344445442  45678899999974  356667777


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +.+++  +|++|||||....  .++.+.+.++|++.+++|+.+++.++++++|.|++++.+++||++||..+..+.+.
T Consensus        81 ~~~~~--~D~li~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~  154 (253)
T PRK08993         81 AEFGH--IDILVNNAGLIRR--EDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIR  154 (253)
T ss_pred             HHhCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCCCC
Confidence            77775  5599999998654  34778899999999999999999999999999987754334999999988877663

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.91  E-value=3.1e-23  Score=165.90  Aligned_cols=146  Identities=15%  Similarity=0.160  Sum_probs=113.3

Q ss_pred             cCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           51 KYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++|+++||||+  +|||+++|++|+++|++|++++|+.. ..+..+++.+..+  ....+++|+++.  +++.++.+.+
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~-~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~   84 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDA-LKKRVEPLAAELG--AFVAGHCDVTDEASIDAVFETLEK   84 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHHHhcC--CceEEecCCCCHHHHHHHHHHHHH
Confidence            568999999997  89999999999999999999988742 2233333333222  245688999975  3566677777


Q ss_pred             HhcCCCccEEEEeccccCCc--ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPY--ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+....  ..++.+.+.++|++.+++|+.|++.+++.++|.|.+  .|+ ||++||.++..+.|..
T Consensus        85 ~~g~--iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~--~g~-Iv~iss~~~~~~~p~~  159 (272)
T PRK08159         85 KWGK--LDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTD--GGS-ILTLTYYGAEKVMPHY  159 (272)
T ss_pred             hcCC--CcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCC--Cce-EEEEeccccccCCCcc
Confidence            7775  55999999986531  245788999999999999999999999999998843  366 9999998888777743

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=99.91  E-value=3.9e-23  Score=163.96  Aligned_cols=144  Identities=21%  Similarity=0.275  Sum_probs=119.1

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhcCCC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIEGLD  132 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~  132 (206)
                      +++||||++|||+++|++|+++|++|++++|+.+++++..+++++.   ..+..+.+|++|.  .++.++.+.+.+++  
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~--   76 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---GEVYAVKADLSDKDDLKNLVKEAWELLGG--   76 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEcCCCCHHHHHHHHHHHHHhcCC--
Confidence            6999999999999999999999999999999999888888887652   3577889999975  35556666666775  


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHh-CCCCceEEEeccccccccccCC
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLK-RKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +|++|||||.....+.++.+.+.++|.+.+++|+.+++.+++.++|.|.+ ++.|+ ||++||.++..+.|..
T Consensus        77 id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~-iv~isS~~~~~~~~~~  148 (259)
T PRK08340         77 IDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGV-LVYLSSVSVKEPMPPL  148 (259)
T ss_pred             CCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCE-EEEEeCcccCCCCCCc
Confidence            55999999986433345778889999999999999999999999999874 34566 9999999988777643

>PRK07024 short chain dehydrogenase; Provisional

Probab=99.91  E-value=3.5e-23  Score=164.05  Aligned_cols=145  Identities=21%  Similarity=0.276  Sum_probs=118.6

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~  130 (206)
                      +++++||||++|||++++++|+++|++|++++|+.+++++..+++...   .++..+.+|+++.  +++.++.+.+.++.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~   78 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKA---ARVSVYAADVRDADALAAAAADFIAAHGL   78 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC---CeeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            478999999999999999999999999999999998887766665431   2688899999975  24455556666664


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                        +|++|||||+..... ...+.+.+++++++++|+.|++.+++.++|.|++++.++ ||++||.++..+.|..
T Consensus        79 --id~lv~~ag~~~~~~-~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~-iv~isS~~~~~~~~~~  148 (257)
T PRK07024         79 --PDVVIANAGISVGTL-TEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGT-LVGIASVAGVRGLPGA  148 (257)
T ss_pred             --CCEEEECCCcCCCcc-ccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCE-EEEEechhhcCCCCCC
Confidence              569999999865322 233378899999999999999999999999998887787 9999999998887754

>PRK06172 short chain dehydrogenase; Provisional

Probab=99.91  E-value=6.6e-23  Score=161.96  Aligned_cols=149  Identities=23%  Similarity=0.283  Sum_probs=125.6

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      .+++|+++||||++|||.+++++|+++|++|++++|+.+++++..+++.+.  +.++..+.+|+++.  .++.++.+.+.
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~~~~~~~~~   81 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA--GGEALFVACDVTRDAEVKALVEQTIAA   81 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999999998888877777653  45678899999975  24556667777


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||..... .++.+.+.|++++++++|+.+++.++++++|.|.+++.++ ||++||..+..+.|..
T Consensus        82 ~g~--id~li~~ag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-ii~~sS~~~~~~~~~~  154 (253)
T PRK06172         82 YGR--LDYAFNNAGIEIEQ-GRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGA-IVNTASVAGLGAAPKM  154 (253)
T ss_pred             hCC--CCEEEECCCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcE-EEEECchhhccCCCCC
Confidence            775  55999999986542 3467889999999999999999999999999998777777 9999999988877744

>PRK12747 short chain dehydrogenase; Provisional

Probab=99.91  E-value=5.6e-23  Score=162.34  Aligned_cols=146  Identities=22%  Similarity=0.314  Sum_probs=116.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEE-cChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      ++|+++||||++|||+++|++|+++|++|++.+ |+.++.++..+++...  +.+...+.+|+++.  ++..++.+.+.+
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSN--GGSAFSIGANLESLHGVEALYSSLDNEL   80 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhc--CCceEEEecccCCHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999875 5667777777777653  44567888999874  344555555433


Q ss_pred             ----cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 ----EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ----~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                          +..++|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++  .|+ ||++||.++..+.|.+
T Consensus        81 ~~~~g~~~id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~--~g~-iv~isS~~~~~~~~~~  155 (252)
T PRK12747         81 QNRTGSTKFDILINNAGIGPG--AFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRD--NSR-IINISSAATRISLPDF  155 (252)
T ss_pred             hhhcCCCCCCEEEECCCcCCC--CCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhc--CCe-EEEECCcccccCCCCc
Confidence                32257799999998643  34788899999999999999999999999999864  366 9999999998887753

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=99.91  E-value=6.5e-23  Score=162.25  Aligned_cols=150  Identities=21%  Similarity=0.323  Sum_probs=127.3

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~  125 (206)
                      .+++++|+++||||++|||++++++|+++|++|++++|+.+.+++..++++..  +.++..+.+|+++..  ++.++.+.
T Consensus         6 ~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~   83 (256)
T PRK06124          6 RFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA--GGAAEALAFDIADEEAVAAAFARID   83 (256)
T ss_pred             ccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHH
Confidence            45577999999999999999999999999999999999998888887777653  446788999999752  45566777


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +.+++  +|++|||||....  .++.+.+.++|++.+++|+.+++.+++.++|.|.+++.++ ||++||..+..+.|+.
T Consensus        84 ~~~~~--id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-iv~~ss~~~~~~~~~~  157 (256)
T PRK06124         84 AEHGR--LDILVNNVGARDR--RPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGR-IIAITSIAGQVARAGD  157 (256)
T ss_pred             HhcCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcE-EEEEeechhccCCCCc
Confidence            76775  5599999998654  4578899999999999999999999999999998877777 9999999988877753

>PRK08278 short chain dehydrogenase; Provisional

Probab=99.91  E-value=9.1e-23  Score=163.23  Aligned_cols=145  Identities=22%  Similarity=0.317  Sum_probs=119.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh-------HHHHHHHHHHhcCCceEEEEEEecCCCc--hHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK-------LKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEG  120 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~  120 (206)
                      ++++|+++||||++|||+++|++|+++|++|++++|+.+.       +++..++++..  +.++..+.+|+++..  ++.
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~~   80 (273)
T PRK08278          3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAA--GGQALPLVGDVRDEDQVAAA   80 (273)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHH
Confidence            3568999999999999999999999999999999998643       44555555543  456888999999863  455


Q ss_pred             HHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       121 ~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      ++.+.+.+++  +|++|||||.....  ++.+.+.+++++++++|+.|++.++++++|.|++++.+. |+++||..+..+
T Consensus        81 ~~~~~~~~g~--id~li~~ag~~~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~-iv~iss~~~~~~  155 (273)
T PRK08278         81 VAKAVERFGG--IDICVNNASAINLT--GTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPH-ILTLSPPLNLDP  155 (273)
T ss_pred             HHHHHHHhCC--CCEEEECCCCcCCC--CcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCE-EEEECCchhccc
Confidence            5666666775  56999999987553  477889999999999999999999999999998877677 999999887766


Q ss_pred             c
Q 028656          201 V  201 (206)
Q Consensus       201 ~  201 (206)
                      .
T Consensus       156 ~  156 (273)
T PRK08278        156 K  156 (273)
T ss_pred             c
Confidence            4

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=99.91  E-value=8.6e-23  Score=161.82  Aligned_cols=146  Identities=18%  Similarity=0.263  Sum_probs=122.5

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~  130 (206)
                      +|+++||||+++||.+++++|+++|++|++++|+.+..++..+++....++.++..+.+|+++..  +..++++.+.+++
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   81 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR   81 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999998888887777765443357889999999752  4555666666665


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~  203 (206)
                        +|++|||||....  .++.+.+.++|++.+++|+.|++.++++++|.|++++ .++ ||++||..+..+.+.
T Consensus        82 --id~vv~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~-iv~~ss~~~~~~~~~  150 (259)
T PRK12384         82 --VDLLVYNAGIAKA--AFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGR-IIQINSKSGKVGSKH  150 (259)
T ss_pred             --CCEEEECCCcCCC--CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcE-EEEecCcccccCCCC
Confidence              5599999998765  3478899999999999999999999999999998776 566 999999888776654

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.91  E-value=7.7e-23  Score=166.26  Aligned_cols=150  Identities=23%  Similarity=0.284  Sum_probs=122.3

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh-hhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-DKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVER  123 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~  123 (206)
                      .+.+++||+++||||++|||+++|++|+++|++|++.+++. +..++..++++..  +.++..+.+|+++.  .++.++.
T Consensus         6 ~~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dv~d~~~~~~~~~~   83 (306)
T PRK07792          6 NTTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAA--GAKAVAVAGDISQRATADELVAT   83 (306)
T ss_pred             CCcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45668899999999999999999999999999999999854 4566777777653  56788899999985  2455556


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-------CCceEEEecccc
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-------KGLSMLNIGKAE  196 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-------~g~~iv~isS~~  196 (206)
                      +.+ +++  +|++|||||+..+.  ++.+.+.++|++.+++|+.|++.+++++.|+|+++.       .|+ ||++||.+
T Consensus        84 ~~~-~g~--iD~li~nAG~~~~~--~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~-iv~isS~~  157 (306)
T PRK07792         84 AVG-LGG--LDIVVNNAGITRDR--MLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGR-IVNTSSEA  157 (306)
T ss_pred             HHH-hCC--CCEEEECCCCCCCC--CcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcE-EEEECCcc
Confidence            555 665  55999999987653  478889999999999999999999999999987542       255 99999999


Q ss_pred             ccccccCC
Q 028656          197 LMCSVRFH  204 (206)
Q Consensus       197 ~~~~~~~~  204 (206)
                      +..+.+.+
T Consensus       158 ~~~~~~~~  165 (306)
T PRK07792        158 GLVGPVGQ  165 (306)
T ss_pred             cccCCCCC
Confidence            88777643

>PRK09186 flagellin modification protein A; Provisional

Probab=99.91  E-value=7.4e-23  Score=161.77  Aligned_cols=147  Identities=15%  Similarity=0.200  Sum_probs=120.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++....++..+.++.+|++|..  ++.++.+.+.+
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   81 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY   81 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            3589999999999999999999999999999999999888888887755434445667799999852  45556666666


Q ss_pred             cCCCccEEEEeccccCC-cccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          129 EGLDVGVLINNVGISYP-YARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      ++  +|++|||||.... ...++.+.+.+++++.+++|+.+++.++++++|.|.+++.++ ||++||..+..+
T Consensus        82 ~~--id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-iv~~sS~~~~~~  151 (256)
T PRK09186         82 GK--IDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGN-LVNISSIYGVVA  151 (256)
T ss_pred             CC--ccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCce-EEEEechhhhcc
Confidence            64  5699999986532 123477889999999999999999999999999998887777 999999877643

>PRK05993 short chain dehydrogenase; Provisional

Probab=99.91  E-value=4e-23  Score=165.60  Aligned_cols=140  Identities=19%  Similarity=0.288  Sum_probs=115.3

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~  130 (206)
                      +|+++||||++|||++++++|+++|++|++++|+.+.++++.+        ..+..+.+|++|..  ++.++.+.+.+++
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~--------~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g   75 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA--------EGLEAFQLDYAEPESIAALVAQVLELSGG   75 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--------CCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            6899999999999999999999999999999999877655432        13567889999752  3444555454433


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                       ++|++|||||+....  ++.+.+.+++++++++|+.|++.+++.++|.|.+++.++ ||++||..+..+.|+.
T Consensus        76 -~id~li~~Ag~~~~~--~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~-iv~isS~~~~~~~~~~  145 (277)
T PRK05993         76 -RLDALFNNGAYGQPG--AVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGR-IVQCSSILGLVPMKYR  145 (277)
T ss_pred             -CccEEEECCCcCCCC--CcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCE-EEEECChhhcCCCCcc
Confidence             577999999987653  478889999999999999999999999999998887787 9999999998877643

>PRK05855 short chain dehydrogenase; Validated

Probab=99.91  E-value=6.2e-23  Score=179.39  Aligned_cols=149  Identities=21%  Similarity=0.255  Sum_probs=126.9

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~  126 (206)
                      ...++++++||||++|||++++++|+++|++|++++|+.++++++.++++..  +..+..+.+|++|..  ++.++++.+
T Consensus       311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~  388 (582)
T PRK05855        311 GPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAA--GAVAHAYRVDVSDADAMEAFAEWVRA  388 (582)
T ss_pred             ccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999999999999999999888888887664  346788999999852  455566666


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC-CceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK-GLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+...  +++.+.+.+++++++++|+.|++.++++++|.|++++. |+ ||++||.++..+.|..
T Consensus       389 ~~g~--id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~-iv~~sS~~~~~~~~~~  462 (582)
T PRK05855        389 EHGV--PDIVVNNAGIGMA--GGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGH-IVNVASAAAYAPSRSL  462 (582)
T ss_pred             hcCC--CcEEEECCccCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcE-EEEECChhhccCCCCC
Confidence            6665  5599999999765  34788999999999999999999999999999988764 55 9999999999887754

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.91  E-value=4.4e-23  Score=164.20  Aligned_cols=146  Identities=16%  Similarity=0.174  Sum_probs=113.8

Q ss_pred             cCCcEEEEECCCC--hHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           51 KYGSWALVTGPTD--GIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGas~--giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++||+++||||++  |||+++|++|+++|++|++.+|+ +++++..+++....  .....+.+|++|.  +++.++.+.+
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~-~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~   80 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DKLKGRVEEFAAQL--GSDIVLPCDVAEDASIDAMFAELGK   80 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc-hhHHHHHHHHHhcc--CCceEeecCCCCHHHHHHHHHHHHh
Confidence            4689999999986  99999999999999999999998 34555556665432  2356788999975  3566677777


Q ss_pred             HhcCCCccEEEEeccccCCcc---cccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYA---RFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~---~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+++  +|++|||||+.....   .++.+.+.++|++++++|+.|++.+++.+.|.| ++ +|+ ||++||..+..+.|.
T Consensus        81 ~~g~--iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~-~g~-Iv~iss~~~~~~~~~  155 (262)
T PRK07984         81 VWPK--FDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSML-NP-GSA-LLTLSYLGAERAIPN  155 (262)
T ss_pred             hcCC--CCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHh-cC-CcE-EEEEecCCCCCCCCC
Confidence            7775  559999999864311   125678899999999999999999999999855 33 466 999999988877775


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      +
T Consensus       156 ~  156 (262)
T PRK07984        156 Y  156 (262)
T ss_pred             c
Confidence            4

>PRK08643 acetoin reductase; Validated

Probab=99.91  E-value=1.5e-22  Score=160.21  Aligned_cols=146  Identities=21%  Similarity=0.271  Sum_probs=122.0

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~  130 (206)
                      +|+++||||++|||++++++|+++|++|++++|+.++.++..+++...  +.++..+++|+++..  ++.++.+.+.+++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   79 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD--GGKAIAVKADVSDRDQVFAAVRQVVDTFGD   79 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999999999999999999998888887777653  456788999999863  4556677776765


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                        +|++|||||+...  .++.+.+.+++++.+++|+.|++.+++.+++.|.+.+.+.+||++||..+..+.|..
T Consensus        80 --id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~  149 (256)
T PRK08643         80 --LNVVVNNAGVAPT--TPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGNPEL  149 (256)
T ss_pred             --CCEEEECCCCCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCCCCC
Confidence              5599999998654  347788999999999999999999999999999776543349999999988877743

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=99.90  E-value=6.6e-23  Score=167.19  Aligned_cols=142  Identities=16%  Similarity=0.191  Sum_probs=114.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCC-CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      .+|+++||||++|||+++|++|+++| ++|++++|+.++.+++.+++..  .+..+..+.+|+++.  +++.++.+.+.+
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   79 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGM--PKDSYTIMHLDLGSLDSVRQFVQQFRESG   79 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcC--CCCeEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            47899999999999999999999999 9999999999888877777643  345677889999975  345556665555


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC--CCceEEEeccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK--KGLSMLNIGKAELMC  199 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~~iv~isS~~~~~  199 (206)
                      ++  +|++|||||+..+. .+..+.+.+++++++++|+.|++.+++.++|.|++++  .++ ||++||.++..
T Consensus        80 ~~--iD~lI~nAG~~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~-IV~vsS~~~~~  148 (314)
T TIGR01289        80 RP--LDALVCNAAVYFPT-AKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKR-LIIVGSITGNT  148 (314)
T ss_pred             CC--CCEEEECCCccccC-ccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCe-EEEEecCcccc
Confidence            54  66999999986432 2234678899999999999999999999999998764  355 99999987753

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.90  E-value=7.9e-23  Score=162.54  Aligned_cols=146  Identities=16%  Similarity=0.203  Sum_probs=110.2

Q ss_pred             cCCcEEEEECC--CChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           51 KYGSWALVTGP--TDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGa--s~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++|+++||||  ++|||+++|++|+++|++|++++|... .++..+++.+..+.  ...+.+|++|.  +++.++.+.+
T Consensus         4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~Dv~d~~~v~~~~~~~~~   80 (260)
T PRK06997          4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFAAEFGS--DLVFPCDVASDEQIDALFASLGQ   80 (260)
T ss_pred             cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchH-HHHHHHHHHHhcCC--cceeeccCCCHHHHHHHHHHHHH
Confidence            46899999996  689999999999999999999876522 12222233322122  24678999975  3667777777


Q ss_pred             HhcCCCccEEEEeccccCCcc---cccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYA---RFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~---~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+++  +|++|||||+.....   ..+++.+.++|++.+++|+.|++.++++++|+|.  +.|+ ||++||.++..+.|.
T Consensus        81 ~~g~--iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~--~~g~-Ii~iss~~~~~~~~~  155 (260)
T PRK06997         81 HWDG--LDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLS--DDAS-LLTLSYLGAERVVPN  155 (260)
T ss_pred             HhCC--CcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCce-EEEEeccccccCCCC
Confidence            7775  559999999864321   1245678899999999999999999999999983  3466 999999998877764


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      +
T Consensus       156 ~  156 (260)
T PRK06997        156 Y  156 (260)
T ss_pred             c
Confidence            3

>PRK06484 short chain dehydrogenase; Validated

Probab=99.90  E-value=7.4e-23  Score=177.33  Aligned_cols=147  Identities=22%  Similarity=0.405  Sum_probs=122.9

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      .++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++     +.....+.+|+++.  .++.++.+.+.+
T Consensus         3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (520)
T PRK06484          3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL-----GPDHHALAMDVSDEAQIREGFEQLHREF   77 (520)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEeccCCHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999999998887766554     34567789999975  356667777777


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||+..+...++.+.+.++|++++++|+.+++.++++++|+|++++.|.+||++||..+..+.|..
T Consensus        78 g~--iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  151 (520)
T PRK06484         78 GR--IDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVALPKR  151 (520)
T ss_pred             CC--CCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCCCCC
Confidence            75  559999999854333457789999999999999999999999999999877666349999999998887743

>PRK07814 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.3e-22  Score=161.47  Aligned_cols=149  Identities=24%  Similarity=0.335  Sum_probs=123.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~  126 (206)
                      .++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++...  +.++.++.+|+++..  ++.++.+.+
T Consensus         6 ~~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   83 (263)
T PRK07814          6 FRLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA--GRRAHVVAADLAHPEATAGLAGQAVE   83 (263)
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3467999999999999999999999999999999999988888877777553  456788899999752  445566666


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC-CCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR-KKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||....  .++.+.+.+++++++++|+.+++.+++++.|+|.+. +.++ ||++||..+..+.++.
T Consensus        84 ~~~~--id~vi~~Ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~-iv~~sS~~~~~~~~~~  157 (263)
T PRK07814         84 AFGR--LDIVVNNVGGTMP--NPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGS-VINISSTMGRLAGRGF  157 (263)
T ss_pred             HcCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeE-EEEEccccccCCCCCC
Confidence            6665  5599999998654  347788999999999999999999999999999874 4455 9999999988776643

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.90  E-value=1.1e-22  Score=161.17  Aligned_cols=147  Identities=21%  Similarity=0.300  Sum_probs=118.3

Q ss_pred             ccCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcC-----------hhhHHHHHHHHHHhcCCceEEEEEEecCCC
Q 028656           50 RKYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRN-----------PDKLKDVSDSIQAKYAKTQIKSVVVDFSGD  116 (206)
Q Consensus        50 ~~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~-----------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (206)
                      +++||+++||||+  +|||+++|++|+++|++|++++|+           .+...+..+++++  .+.++..+.+|+++.
T Consensus         3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~D~~~~   80 (256)
T PRK12859          3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLK--NGVKVSSMELDLTQN   80 (256)
T ss_pred             CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHh--cCCeEEEEEcCCCCH
Confidence            3679999999999  599999999999999999998643           2233344455554  356788889999975


Q ss_pred             c--hHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          117 L--DEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       117 ~--~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      .  ++.++++.+.+++  +|++|||||....  .++.+.+.+++++.+++|+.|++.++++++|.|.+++.|+ ||++||
T Consensus        81 ~~i~~~~~~~~~~~g~--id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~-iv~isS  155 (256)
T PRK12859         81 DAPKELLNKVTEQLGY--PHILVNNAAYSTN--NDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGR-IINMTS  155 (256)
T ss_pred             HHHHHHHHHHHHHcCC--CcEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeE-EEEEcc
Confidence            2  5556666666664  5699999998654  3478999999999999999999999999999998777777 999999


Q ss_pred             ccccccccC
Q 028656          195 AELMCSVRF  203 (206)
Q Consensus       195 ~~~~~~~~~  203 (206)
                      ..+..+.|+
T Consensus       156 ~~~~~~~~~  164 (256)
T PRK12859        156 GQFQGPMVG  164 (256)
T ss_pred             cccCCCCCC
Confidence            998877664

>PRK07831 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.8e-22  Score=160.40  Aligned_cols=148  Identities=22%  Similarity=0.307  Sum_probs=123.4

Q ss_pred             cCCcEEEEECCCC-hHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           51 KYGSWALVTGPTD-GIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~-giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++|+++||||++ |||++++++|+++|++|++++|+.+++++..+++++..+..++..+.+|+++.  .++.++.+.+.
T Consensus        15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   94 (262)
T PRK07831         15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER   94 (262)
T ss_pred             cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            5689999999985 99999999999999999999999988888887776644445688889999975  24555666666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~  203 (206)
                      +++  +|++|||||....  .++.+.+.++|++.+++|+.+++.+++.++|.|++++ .|. ||++||..+..+.+.
T Consensus        95 ~g~--id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~-iv~~ss~~~~~~~~~  166 (262)
T PRK07831         95 LGR--LDVLVNNAGLGGQ--TPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGV-IVNNASVLGWRAQHG  166 (262)
T ss_pred             cCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcE-EEEeCchhhcCCCCC
Confidence            665  5599999998654  4478889999999999999999999999999998776 566 999999888776654

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=99.90  E-value=9.8e-23  Score=161.48  Aligned_cols=149  Identities=25%  Similarity=0.341  Sum_probs=118.3

Q ss_pred             EEEEECCCChHHHHHHHHHHH----CCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           55 WALVTGPTDGIGKSFAFQLAK----TGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~----~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +++||||++|||+++|++|++    .|++|++++|+.++++++.++++...++..+..+.+|+++.  +++.++.+.+.+
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~   81 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP   81 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence            689999999999999999997    79999999999999998888887644456788899999975  245556666655


Q ss_pred             cCC--CccEEEEeccccCCcccccccC-CHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC--CCceEEEeccccccccccC
Q 028656          129 EGL--DVGVLINNVGISYPYARFFHEV-DQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK--KGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       129 ~~~--~id~lvnnAg~~~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~~iv~isS~~~~~~~~~  203 (206)
                      +..  +.|++|||||..........+. +.+++++++++|+.|++.+++.++|.|.+++  .++ ||++||..+..+.|.
T Consensus        82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~-iv~isS~~~~~~~~~  160 (256)
T TIGR01500        82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRT-VVNISSLCAIQPFKG  160 (256)
T ss_pred             ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCE-EEEECCHHhCCCCCC
Confidence            542  3469999999864322223333 5788999999999999999999999998653  355 999999998887775


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      .
T Consensus       161 ~  161 (256)
T TIGR01500       161 W  161 (256)
T ss_pred             c
Confidence            4

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=99.90  E-value=7.5e-23  Score=162.61  Aligned_cols=144  Identities=19%  Similarity=0.278  Sum_probs=114.2

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.++++++.+.     .+.++..+.+|+++.  .++.++++.+.
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (262)
T TIGR03325         2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA-----HGDAVVGVEGDVRSLDDHKEAVARCVAA   76 (262)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh-----cCCceEEEEeccCCHHHHHHHHHHHHHH
Confidence            35699999999999999999999999999999999998776665432     134577889999875  35666777777


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCH----HHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQ----VLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~----~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +++  +|++|||||+.... .++.+.+.    ++|++++++|+.|++.++++++|.|.+++ |+ ||++||..+..+.+.
T Consensus        77 ~g~--id~li~~Ag~~~~~-~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~-iv~~sS~~~~~~~~~  151 (262)
T TIGR03325        77 FGK--IDCLIPNAGIWDYS-TALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASR-GS-VIFTISNAGFYPNGG  151 (262)
T ss_pred             hCC--CCEEEECCCCCccC-CccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcC-CC-EEEEeccceecCCCC
Confidence            775  55999999975321 22334333    57999999999999999999999987654 66 999999988877664

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK06197 short chain dehydrogenase; Provisional

Probab=99.90  E-value=5.3e-23  Score=167.10  Aligned_cols=143  Identities=23%  Similarity=0.287  Sum_probs=117.8

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||+++|++|+++|++|++++|+.++.++..+++....++.++.++.+|+++.  +++.++++.+.
T Consensus        13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   92 (306)
T PRK06197         13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA   92 (306)
T ss_pred             cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence            3679999999999999999999999999999999999988887777776544456788899999975  24455566666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      +++  +|++|||||+..+.    .+.+.++++..+++|+.|++.+++.++|.|++.+.++ ||++||.++..
T Consensus        93 ~~~--iD~li~nAg~~~~~----~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~-iV~vSS~~~~~  157 (306)
T PRK06197         93 YPR--IDLLINNAGVMYTP----KQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSR-VVTVSSGGHRI  157 (306)
T ss_pred             CCC--CCEEEECCccccCC----CccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCE-EEEECCHHHhc
Confidence            664  56999999986532    3466778899999999999999999999998776666 99999987554

>PRK07576 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.6e-22  Score=160.99  Aligned_cols=148  Identities=18%  Similarity=0.291  Sum_probs=121.0

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~  126 (206)
                      +++++|+++||||++|||.+++++|+++|++|++++|+.+.+++..+++...  +.++..+.+|+++..  ++.++.+.+
T Consensus         5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~i~~~~~~~~~   82 (264)
T PRK07576          5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA--GPEGLGVSADVRDYAAVEAAFAQIAD   82 (264)
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHH
Confidence            3467999999999999999999999999999999999988887777777653  345678899998752  455566666


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||....  .++.+.+.+++++.+++|+.|++.++++++|.|.++ .|+ ||++||..+..+.|.+
T Consensus        83 ~~~~--iD~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~-~g~-iv~iss~~~~~~~~~~  154 (264)
T PRK07576         83 EFGP--IDVLVSGAAGNFP--APAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRP-GAS-IIQISAPQAFVPMPMQ  154 (264)
T ss_pred             HcCC--CCEEEECCCCCCC--CccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCE-EEEECChhhccCCCCc
Confidence            6664  5699999987654  347788999999999999999999999999988654 366 9999999887776643

>PRK06180 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.3e-22  Score=162.53  Aligned_cols=143  Identities=24%  Similarity=0.278  Sum_probs=118.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~  129 (206)
                      .+|+++||||+||||++++++|+++|++|++++|+.++++++.+.     .+.++..+.+|+++..  ++.++.+.+.++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   77 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL-----HPDRALARLLDVTDFDAIDAVVADAEATFG   77 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh-----cCCCeeEEEccCCCHHHHHHHHHHHHHHhC
Confidence            368999999999999999999999999999999998776554432     1345778899999752  455566666666


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +  +|++|||||....  .++.+.+.+++++++++|+.|++.++++++|+|++++.++ ||++||.++..+.|++
T Consensus        78 ~--~d~vv~~ag~~~~--~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~-iv~iSS~~~~~~~~~~  147 (277)
T PRK06180         78 P--IDVLVNNAGYGHE--GAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGH-IVNITSMGGLITMPGI  147 (277)
T ss_pred             C--CCEEEECCCccCC--cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCE-EEEEecccccCCCCCc
Confidence            5  5599999998754  3477889999999999999999999999999998887777 9999999988877754

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=99.90  E-value=1.7e-22  Score=160.05  Aligned_cols=145  Identities=23%  Similarity=0.281  Sum_probs=119.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      +.+|+++||||++|||+++|++|+++|++|++++|+.++.++..+++     +..+..+.+|+++..  ++.++++.+.+
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSIDRIVAAAVERF   78 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            56899999999999999999999999999999999998877766554     234778899999752  45556666666


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||....  .++.+.+.+++++++++|+.+++.+++++.|.|.+++.+.+||++||..+..+.|..
T Consensus        79 ~~--id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~  150 (257)
T PRK07067         79 GG--IDILFNNAALFDM--APILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGEALV  150 (257)
T ss_pred             CC--CCEEEECCCcCCC--CCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCCCCC
Confidence            65  5699999998754  347788999999999999999999999999999876543349999998887776643

>PRK05650 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.5e-22  Score=161.48  Aligned_cols=144  Identities=22%  Similarity=0.291  Sum_probs=121.6

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEGL  131 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~  131 (206)
                      ++++||||++|||++++++|+++|++|++++|+.+++++..+++...  +.++..+.+|+++..  ++.++.+.+.+++ 
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~-   77 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA--GGDGFYQRCDVRDYSQLTALAQACEEKWGG-   77 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHHcCC-
Confidence            47999999999999999999999999999999998888888877653  456788899999752  4444555555564 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                       +|++|||||.....  ++.+.+.+++++++++|+.+++.+++.++|.|.+.+.++ ||++||..+..+.|+.
T Consensus        78 -id~lI~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-iv~vsS~~~~~~~~~~  146 (270)
T PRK05650         78 -IDVIVNNAGVASGG--FFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGR-IVNIASMAGLMQGPAM  146 (270)
T ss_pred             -CCEEEECCCCCCCC--CcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCE-EEEECChhhcCCCCCc
Confidence             56999999987653  378889999999999999999999999999998877777 9999999998887754

>PRK06138 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.9e-22  Score=159.03  Aligned_cols=146  Identities=23%  Similarity=0.298  Sum_probs=122.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+..++..+++.   .+.++..+.+|++|.  +++.++.+.+.
T Consensus         2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~i~~~   78 (252)
T PRK06138          2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA---AGGRAFARQGDVGSAEAVEALVDFVAAR   78 (252)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4579999999999999999999999999999999999888777666654   256688999999985  24555666666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +++  +|++|||+|.....  ++.+.+.+++++++++|+.+++.+++.++|.|++++.++ |+++||..+..+.+.
T Consensus        79 ~~~--id~vi~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-ii~~sS~~~~~~~~~  149 (252)
T PRK06138         79 WGR--LDVLVNNAGFGCGG--TVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGS-IVNTASQLALAGGRG  149 (252)
T ss_pred             cCC--CCEEEECCCCCCCC--CcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeE-EEEECChhhccCCCC
Confidence            664  56999999987553  367888999999999999999999999999998877777 999999988776654

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=99.90  E-value=2.6e-22  Score=158.89  Aligned_cols=149  Identities=27%  Similarity=0.317  Sum_probs=123.3

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~  125 (206)
                      .+++.+|+++||||++|||++++++|+++|++|++++|+.+..++..++++..  +.++..+.+|+++..  ++.++.+.
T Consensus         6 ~~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~i~~~~~~~~   83 (255)
T PRK06113          6 NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADFAL   83 (255)
T ss_pred             ccCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            45577999999999999999999999999999999999988888877777653  456778899999752  45555666


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +.+++  +|++|||||...+.  ++ +.+.+++++.+++|+.|++.+++++.|.|.+.+.++ ||++||.++..+.+..
T Consensus        84 ~~~~~--~d~li~~ag~~~~~--~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~isS~~~~~~~~~~  156 (255)
T PRK06113         84 SKLGK--VDILVNNAGGGGPK--PF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGV-ILTITSMAAENKNINM  156 (255)
T ss_pred             HHcCC--CCEEEECCCCCCCC--CC-CCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcE-EEEEecccccCCCCCc
Confidence            66665  56999999986543  24 678899999999999999999999999997776666 9999999988777643

>PRK07890 short chain dehydrogenase; Provisional

Probab=99.90  E-value=2.5e-22  Score=158.88  Aligned_cols=147  Identities=24%  Similarity=0.325  Sum_probs=121.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      +.+|+++||||++|||++++++|+++|++|++++|+.++.++..+++...  +.++..+.+|+++..  +..++.+.+.+
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL--GRRALAVPTDITDEDQCANLVALALERF   80 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh--CCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999999999999999998888777777653  456788999998752  45556666667


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||...+. .++.+.+.+++++++++|+.|++.+++++.|.|.+++ ++ ||++||..+..+.|.+
T Consensus        81 g~--~d~vi~~ag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~-ii~~sS~~~~~~~~~~  151 (258)
T PRK07890         81 GR--VDALVNNAFRVPSM-KPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESG-GS-IVMINSMVLRHSQPKY  151 (258)
T ss_pred             CC--ccEEEECCccCCCC-CCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC-CE-EEEEechhhccCCCCc
Confidence            65  56999999976432 3577889999999999999999999999999886653 56 9999999888777644

>PRK08703 short chain dehydrogenase; Provisional

Probab=99.90  E-value=2.9e-22  Score=157.09  Aligned_cols=149  Identities=20%  Similarity=0.286  Sum_probs=122.2

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc----hHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL----DEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~~~  126 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.++.++..+++... .+.......+|+++..    ++..+.+.+
T Consensus         4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~i~~   82 (239)
T PRK08703          4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEA-GHPEPFAIRFDLMSAEEKEFEQFAATIAE   82 (239)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHc-CCCCcceEEeeecccchHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999888887777653 2344667788887532    344556666


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+++ ++|++|||||..... .++.+.+.+++++++++|+.|++.++++++|.|.+.+.++ +|++||..+..+.|+
T Consensus        83 ~~~~-~id~vi~~ag~~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~-iv~~ss~~~~~~~~~  156 (239)
T PRK08703         83 ATQG-KLDGIVHCAGYFYAL-SPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDAS-VIFVGESHGETPKAY  156 (239)
T ss_pred             HhCC-CCCEEEEeccccccC-CCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCE-EEEEeccccccCCCC
Confidence            6622 467999999976432 3578899999999999999999999999999998777677 999999998888774

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=99.90  E-value=1.2e-22  Score=161.56  Aligned_cols=143  Identities=20%  Similarity=0.268  Sum_probs=115.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.++++++.+++     +.++..+.+|+++.  .++.++.+.+.+
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTSYADNQRAVDQTVDAF   78 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHhc
Confidence            56899999999999999999999999999999999988877665544     33567889999975  355666777777


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHH----HHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVL----LKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~----~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++  +|++|||||+.... .++.+.+.++    |++++++|+.+++.++++++|.|.++ .|+ ||++||.++..+.+.
T Consensus        79 g~--id~li~~ag~~~~~-~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~g~-iv~~sS~~~~~~~~~  152 (263)
T PRK06200         79 GK--LDCFVGNAGIWDYN-TSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKAS-GGS-MIFTLSNSSFYPGGG  152 (263)
T ss_pred             CC--CCEEEECCCCcccC-CCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhc-CCE-EEEECChhhcCCCCC
Confidence            75  55999999986432 2355666665    88999999999999999999998654 466 999999998887664

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.90  E-value=2.6e-22  Score=158.16  Aligned_cols=145  Identities=21%  Similarity=0.277  Sum_probs=121.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEE-EEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      +.+++++||||++|||++++++|+++|++|++ .+|+.++.+++.++++..  +.++..+.+|+++..  ++.++++.+.
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEAL--GRKALAVKANVGDVEKIKEMFAQIDEE   79 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999876 578888888777777653  456788999999863  4555666666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      +++  +|++|||||....  .++.+.+.+++++.+++|+.+++.+++++.|.|.+++.|+ ||++||..+..+.|
T Consensus        80 ~~~--id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~-iv~~sS~~~~~~~~  149 (250)
T PRK08063         80 FGR--LDVFVNNAASGVL--RPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGK-IISLSSLGSIRYLE  149 (250)
T ss_pred             cCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeE-EEEEcchhhccCCC
Confidence            664  5699999998654  3478889999999999999999999999999998877777 99999988776655

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=99.90  E-value=2.2e-22  Score=158.43  Aligned_cols=144  Identities=26%  Similarity=0.317  Sum_probs=116.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||+++|++|+++|++|++++|+..  ++..+.+...  +.++..+.+|+++..  ++.++++.+.
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEAL--GRRFLSLTADLSDIEAIKALVDSAVEE   77 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999752  3344444432  456788899999752  4455566666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEecccccccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~  202 (206)
                      +++  +|++|||||.....  ++.+.+.+++++++++|+.+++.++++++|.|.+++ .++ ||++||..+..+.|
T Consensus        78 ~~~--~d~li~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~-iv~~sS~~~~~~~~  148 (248)
T TIGR01832        78 FGH--IDILVNNAGIIRRA--DAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGK-IINIASMLSFQGGI  148 (248)
T ss_pred             cCC--CCEEEECCCCCCCC--ChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeE-EEEEecHHhccCCC
Confidence            664  66999999987653  467888999999999999999999999999998775 566 99999998877655

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07904 short chain dehydrogenase; Provisional

Probab=99.90  E-value=2.8e-22  Score=158.80  Aligned_cols=145  Identities=15%  Similarity=0.072  Sum_probs=114.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCC-CcEEEEEcChhh-HHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDK-LKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g-~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      ++++++||||++|||+++|++++++| ++|++++|++++ ++++.++++..+ +..+..+++|++|..  ++.++++.+ 
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~-   84 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAFA-   84 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHHh-
Confidence            57899999999999999999999995 899999999886 888888887642 346888999999752  334455443 


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+  ++|++|||+|...+...  ...+.++..+++++|+.|++.+++.++|.|.+++.++ ||++||..+..+.|+
T Consensus        85 ~g--~id~li~~ag~~~~~~~--~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~-iv~isS~~g~~~~~~  155 (253)
T PRK07904         85 GG--DVDVAIVAFGLLGDAEE--LWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQ-IIAMSSVAGERVRRS  155 (253)
T ss_pred             cC--CCCEEEEeeecCCchhh--cccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCce-EEEEechhhcCCCCC
Confidence            24  56799999998654221  1224555668899999999999999999999888787 999999988776554

>PRK09072 short chain dehydrogenase; Provisional

Probab=99.90  E-value=2.4e-22  Score=159.74  Aligned_cols=146  Identities=26%  Similarity=0.424  Sum_probs=120.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      ++++++++||||++|||++++++|+++|++|++++|+.+++++..+++.   .+.++.++.+|++|..  ++.++.+.+ 
T Consensus         2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~~~-   77 (263)
T PRK09072          2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP---YPGRHRWVVADLTSEAGREAVLARARE-   77 (263)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHHh-
Confidence            3568999999999999999999999999999999999988887777662   2457888999999862  333344433 


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  ++|++|||||....  .++.+.+.+++++++++|+.|++.+++.++|.|.+++.+. ||++||..+..+.|+.
T Consensus        78 ~~--~id~lv~~ag~~~~--~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~-iv~isS~~~~~~~~~~  149 (263)
T PRK09072         78 MG--GINVLINNAGVNHF--ALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAM-VVNVGSTFGSIGYPGY  149 (263)
T ss_pred             cC--CCCEEEECCCCCCc--cccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCE-EEEecChhhCcCCCCc
Confidence            44  46699999998654  3477889999999999999999999999999998877777 9999999888777643

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=99.90  E-value=4.9e-22  Score=157.79  Aligned_cols=148  Identities=19%  Similarity=0.279  Sum_probs=120.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh-hhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-DKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~  126 (206)
                      ++++|+++||||++|||+++|++|+++|++|++.+|+. +..++..++++..  +.++..+.+|+++..  ++.++.+.+
T Consensus         4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~~   81 (261)
T PRK08936          4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKA--GGEAIAVKGDVTVESDVVNLIQTAVK   81 (261)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc--CCeEEEEEecCCCHHHHHHHHHHHHH
Confidence            36799999999999999999999999999999988854 4566666666553  456778899999752  344556666


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||...+  .++.+.+.+++++.+++|+.+++.+++.++|.|.+++ .|+ ||++||..+..+.|..
T Consensus        82 ~~g~--id~lv~~ag~~~~--~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~-iv~~sS~~~~~~~~~~  155 (261)
T PRK08936         82 EFGT--LDVMINNAGIENA--VPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGN-IINMSSVHEQIPWPLF  155 (261)
T ss_pred             HcCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcE-EEEEccccccCCCCCC
Confidence            6664  5699999998755  3477889999999999999999999999999998765 455 9999999888777654

>PRK07832 short chain dehydrogenase; Provisional

Probab=99.90  E-value=3.9e-22  Score=159.40  Aligned_cols=145  Identities=25%  Similarity=0.347  Sum_probs=118.3

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEGL  131 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~  131 (206)
                      |+++||||++|||++++++|+++|++|++++|+.+.+++..+++...+ ........+|+++..  ++.++++.+.+++ 
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~-   78 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALG-GTVPEHRALDISDYDAVAAFAADIHAAHGS-   78 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEeeCCCHHHHHHHHHHHHHhcCC-
Confidence            579999999999999999999999999999999988888777776542 333556789998752  4445566566664 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccCC
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~~  204 (206)
                       +|++|||||....  .++.+.+.+++++.+++|+.|++.++++++|.|.+++ .++ ||++||..+..+.|.+
T Consensus        79 -id~lv~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~-ii~isS~~~~~~~~~~  148 (272)
T PRK07832         79 -MDVVMNIAGISAW--GTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGH-LVNVSSAAGLVALPWH  148 (272)
T ss_pred             -CCEEEECCCCCCC--CccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcE-EEEEccccccCCCCCC
Confidence             5699999998654  3478899999999999999999999999999997654 355 9999999888777754

>PRK06484 short chain dehydrogenase; Validated

Probab=99.90  E-value=1.5e-22  Score=175.31  Aligned_cols=143  Identities=21%  Similarity=0.352  Sum_probs=119.9

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      ..||+++||||++|||+++|++|+++|++|++++|+.++++++.+++     +.+...+.+|++|.  .++.++.+.+.+
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~  341 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL-----GDEHLSVQADITDEAAVESAFAQIQARW  341 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEccCCCHHHHHHHHHHHHHHc
Confidence            47899999999999999999999999999999999988887776554     34567789999975  356667777777


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||+.... .++.+.+.++|++++++|+.|+++++++++|.|  ++.|+ ||++||.++..+.|+.
T Consensus       342 g~--id~li~nAg~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~--~~~g~-iv~isS~~~~~~~~~~  411 (520)
T PRK06484        342 GR--LDVLVNNAGIAEVF-KPSLEQSAEDFTRVYDVNLSGAFACARAAARLM--SQGGV-IVNLGSIASLLALPPR  411 (520)
T ss_pred             CC--CCEEEECCCCcCCC-CChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHh--ccCCE-EEEECchhhcCCCCCC
Confidence            75  55999999986432 347788999999999999999999999999999  34466 9999999999887754

>PRK06182 short chain dehydrogenase; Validated

Probab=99.90  E-value=2e-22  Score=161.14  Aligned_cols=139  Identities=27%  Similarity=0.386  Sum_probs=115.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~  129 (206)
                      ++|+++||||++|||++++++|+++|++|++++|+.+++++..+        ..+..+.+|++|.  .++.++.+.+.++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~~~~~~   73 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS--------LGVHPLSLDVTDEASIKAAVDTIIAEEG   73 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--------CCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            47899999999999999999999999999999999877654321        1256788999975  2455566666666


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +  +|++|||||....  .++.+.+.+++++.+++|+.|++.+++.++|.|++++.|+ ||++||..+..+.|.
T Consensus        74 ~--id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~-iv~isS~~~~~~~~~  142 (273)
T PRK06182         74 R--IDVLVNNAGYGSY--GAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGR-IINISSMGGKIYTPL  142 (273)
T ss_pred             C--CCEEEECCCcCCC--CchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCE-EEEEcchhhcCCCCC
Confidence            4  5599999998754  3478889999999999999999999999999998887787 999999888777664

>PRK06128 oxidoreductase; Provisional

Probab=99.90  E-value=2.5e-22  Score=162.76  Aligned_cols=146  Identities=21%  Similarity=0.286  Sum_probs=118.5

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh--hHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD--KLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++|+++||||++|||++++++|+++|++|++..++.+  ..++..+.++..  +.++..+.+|+++.  +++.++++.+
T Consensus        53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~  130 (300)
T PRK06128         53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAE--GRKAVALPGDLKDEAFCRQLVERAVK  130 (300)
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHHHH
Confidence            66899999999999999999999999999999887643  355555666553  45678899999975  3566677777


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||..... .++.+.+.++|++++++|+.|++.++++++|.|.+  .++ ||++||..+..+.+.+
T Consensus       131 ~~g~--iD~lV~nAg~~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~~~-iv~~sS~~~~~~~~~~  202 (300)
T PRK06128        131 ELGG--LDILVNIAGKQTAV-KDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPP--GAS-IINTGSIQSYQPSPTL  202 (300)
T ss_pred             HhCC--CCEEEECCcccCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCc--CCE-EEEECCccccCCCCCc
Confidence            7775  55999999986432 34788899999999999999999999999998853  355 9999999998877754

>PRK07856 short chain dehydrogenase; Provisional

Probab=99.90  E-value=2.7e-22  Score=158.50  Aligned_cols=141  Identities=25%  Similarity=0.265  Sum_probs=115.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++++|+++||||++|||++++++|+++|++|++++|+.++        ..  .+..+..+.+|+++.  .++.++.+.+
T Consensus         2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~--------~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~   71 (252)
T PRK07856          2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE--------TV--DGRPAEFHAADVRDPDQVAALVDAIVE   71 (252)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh--------hh--cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            34679999999999999999999999999999999998754        11  244677889999875  3555666667


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+...  .++.+.+.+++++++++|+.+++.+++++.|.|.+++ .|+ ||++||..+..+.|..
T Consensus        72 ~~~~--id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~-ii~isS~~~~~~~~~~  145 (252)
T PRK07856         72 RHGR--LDVLVNNAGGSPY--ALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGS-IVNIGSVSGRRPSPGT  145 (252)
T ss_pred             HcCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcE-EEEEcccccCCCCCCC
Confidence            6675  5599999998754  3477889999999999999999999999999987654 355 9999999998887743

>PRK07985 oxidoreductase; Provisional

Probab=99.90  E-value=3.3e-22  Score=161.65  Aligned_cols=146  Identities=18%  Similarity=0.196  Sum_probs=116.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh--hhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP--DKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++|+++||||++|||+++|++|+++|++|++.+|+.  +..+++.+.+...  +.++..+.+|+++.  +++.++++.+
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~  124 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEEC--GRKAVLLPGDLSDEKFARSLVHEAHK  124 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999988753  3455555554442  45677889999975  3556667777


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||..... .++.+.+.++|++++++|+.|++.++++++|.|.+  .++ ||++||..+..+.|..
T Consensus       125 ~~g~--id~lv~~Ag~~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~--~g~-iv~iSS~~~~~~~~~~  196 (294)
T PRK07985        125 ALGG--LDIMALVAGKQVAI-PDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPK--GAS-IITTSSIQAYQPSPHL  196 (294)
T ss_pred             HhCC--CCEEEECCCCCcCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhc--CCE-EEEECCchhccCCCCc
Confidence            7775  55999999975322 34778899999999999999999999999998853  356 9999999998887753

>PRK07102 short chain dehydrogenase; Provisional

Probab=99.89  E-value=5.6e-22  Score=155.82  Aligned_cols=144  Identities=17%  Similarity=0.227  Sum_probs=119.6

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      |+++||||++|||++++++|+++|++|++++|+.++.++..+++... ++.++.++++|+++.  +.++++.+.... ++
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~--~~~~~~~~~~~~-~~   77 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR-GAVAVSTHELDILDT--ASHAAFLDSLPA-LP   77 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh-cCCeEEEEecCCCCh--HHHHHHHHHHhh-cC
Confidence            68999999999999999999999999999999998888777776554 356788999999986  444444444332 35


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      |++|||||.....  ++.+.+.+++.+.+++|+.|++.+++++.|.|.+++.++ +|++||..+..+.|..
T Consensus        78 d~vv~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~~  145 (243)
T PRK07102         78 DIVLIAVGTLGDQ--AACEADPALALREFRTNFEGPIALLTLLANRFEARGSGT-IVGISSVAGDRGRASN  145 (243)
T ss_pred             CEEEECCcCCCCc--ccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCE-EEEEecccccCCCCCC
Confidence            7999999986543  367888999999999999999999999999998877777 9999999888777654

>PLN00015 protochlorophyllide reductase

Probab=99.89  E-value=1.9e-22  Score=164.04  Aligned_cols=136  Identities=18%  Similarity=0.222  Sum_probs=110.5

Q ss_pred             EEECCCChHHHHHHHHHHHCC-CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhcCCCc
Q 028656           57 LVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIEGLDV  133 (206)
Q Consensus        57 lItGas~giG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~i  133 (206)
                      +||||++|||++++++|+++| ++|++++|+.++.+++.+++..  .+.++..+.+|+++.  +++.++.+.+.++  .+
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~--~i   76 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGM--PKDSYTVMHLDLASLDSVRQFVDNFRRSGR--PL   76 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcC--CCCeEEEEEecCCCHHHHHHHHHHHHhcCC--CC
Confidence            599999999999999999999 9999999999888877776643  245677889999975  2444555555445  46


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC--CCceEEEecccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK--KGLSMLNIGKAELM  198 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~~iv~isS~~~~  198 (206)
                      |++|||||+..+. .++.+.+.++|++++++|+.|++.+++.++|.|++++  .|+ ||++||.++.
T Consensus        77 D~lInnAG~~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~-IV~vsS~~~~  141 (308)
T PLN00015         77 DVLVCNAAVYLPT-AKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKR-LIIVGSITGN  141 (308)
T ss_pred             CEEEECCCcCCCC-CCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCE-EEEEeccccc
Confidence            6999999986432 2356788999999999999999999999999998775  466 9999998775

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.89  E-value=9.5e-24  Score=153.02  Aligned_cols=145  Identities=26%  Similarity=0.351  Sum_probs=124.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      .+.|+++++||++-|||++++++|++.|++|+.++|+++.+..+.++.     ...+.++..|+++.  ++..+.....+
T Consensus         4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~-----p~~I~Pi~~Dls~w--ea~~~~l~~v~   76 (245)
T KOG1207|consen    4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKET-----PSLIIPIVGDLSAW--EALFKLLVPVF   76 (245)
T ss_pred             cccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhC-----CcceeeeEecccHH--HHHHHhhcccC
Confidence            467999999999999999999999999999999999999998887764     44588999999975  33333333333


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCCC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFHY  205 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~y  205 (206)
                        .+|.+|||||+...  .||.+.+.+++++.|++|+.+++.++|...+.+..++..++|||+||.++..+..+|.
T Consensus        77 --pidgLVNNAgvA~~--~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R~~~nHt  148 (245)
T KOG1207|consen   77 --PIDGLVNNAGVATN--HPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIRPLDNHT  148 (245)
T ss_pred             --chhhhhccchhhhc--chHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcccccCCce
Confidence              46699999999876  4599999999999999999999999999998888887666699999999999988773

>PRK06914 short chain dehydrogenase; Provisional

Probab=99.89  E-value=4e-22  Score=159.75  Aligned_cols=147  Identities=27%  Similarity=0.357  Sum_probs=121.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~  129 (206)
                      ++|+++||||+||+|++++++|+++|++|++++|+.+..++..+++.....+.++..+.+|++|..  ++ ++.+.+.++
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~~   80 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEIG   80 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhcC
Confidence            478999999999999999999999999999999999888877766655433467888999999862  33 455555556


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +  +|++|||||...+  .++.+.+.+++++++++|+.|++.+++.++|.|++++.++ ||++||..+..+.+..
T Consensus        81 ~--id~vv~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~vsS~~~~~~~~~~  150 (280)
T PRK06914         81 R--IDLLVNNAGYANG--GFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGK-IINISSISGRVGFPGL  150 (280)
T ss_pred             C--eeEEEECCccccc--CccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCE-EEEECcccccCCCCCC
Confidence            4  6699999998765  3467889999999999999999999999999998777777 9999998887776643

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=99.89  E-value=4e-22  Score=156.76  Aligned_cols=145  Identities=23%  Similarity=0.271  Sum_probs=118.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEE-cChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      ++|+++||||++|||++++++|+++|++|++.. ++.++.++..+++...  +.++....+|+++.  +++.++++.+.+
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKAL--GFDFIASEGNVGDWDSTKAAFDKVKAEV   79 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999988854 4555555555555442  45677889999975  255666777777


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++  +|++|||||.....  ++.+.+.+++++++++|+.+++.++++++|.|.+++.++ ||++||..+..+.+.
T Consensus        80 ~~--id~li~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-iv~isS~~~~~~~~~  149 (246)
T PRK12938         80 GE--IDVLVNNAGITRDV--VFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGR-IINISSVNGQKGQFG  149 (246)
T ss_pred             CC--CCEEEECCCCCCCC--ChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeE-EEEEechhccCCCCC
Confidence            75  55999999987543  478889999999999999999999999999998777677 999999988777663

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=99.89  E-value=3.8e-22  Score=163.18  Aligned_cols=142  Identities=15%  Similarity=0.174  Sum_probs=113.3

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      ..+|+++||||++|||++++++|+++|++|++++|+.++.+++.+++..  .+.++.++.+|+++.  +++.++.+.+..
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   81 (322)
T PRK07453          4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGI--PPDSYTIIHIDLGDLDSVRRFVDDFRALG   81 (322)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc--cCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            4589999999999999999999999999999999999888888777753  245678889999975  234444443333


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC--CceEEEecccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK--GLSMLNIGKAELM  198 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~~iv~isS~~~~  198 (206)
                      +  ++|++|||||+..+. .+..+.+.+++++++++|+.|++.+++.++|.|++++.  ++ ||++||....
T Consensus        82 ~--~iD~li~nAg~~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~r-iV~vsS~~~~  149 (322)
T PRK07453         82 K--PLDALVCNAAVYMPL-LKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPR-LVILGTVTAN  149 (322)
T ss_pred             C--CccEEEECCcccCCC-CCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCce-EEEEcccccC
Confidence            3  467999999986432 12346688999999999999999999999999987754  45 9999997653

>PRK06179 short chain dehydrogenase; Provisional

Probab=99.89  E-value=2.7e-22  Score=159.95  Aligned_cols=138  Identities=27%  Similarity=0.398  Sum_probs=115.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~  129 (206)
                      ++++++||||+||||++++++|+++|++|++++|+.++.+.          ...+..+.+|++|..  ++.++.+.+.++
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g   72 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP----------IPGVELLELDVTDDASVQAAVDEVIARAG   72 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc----------cCCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence            46899999999999999999999999999999998765431          224677899999752  555666666677


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +  +|++|||||....  .++.+.+.+++++++++|+.|++.+++.++|.|++++.++ ||++||..+..+.|..
T Consensus        73 ~--~d~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~-iv~isS~~~~~~~~~~  142 (270)
T PRK06179         73 R--IDVLVNNAGVGLA--GAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGR-IINISSVLGFLPAPYM  142 (270)
T ss_pred             C--CCEEEECCCCCCC--cCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCce-EEEECCccccCCCCCc
Confidence            5  5599999998765  3477889999999999999999999999999998888888 9999999998887753

>PRK12743 oxidoreductase; Provisional

Probab=99.89  E-value=6.5e-22  Score=156.72  Aligned_cols=146  Identities=21%  Similarity=0.326  Sum_probs=119.4

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-ChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhc
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIE  129 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~  129 (206)
                      +|+++||||++|||++++++|+++|++|+++.+ +.+..++..++++..  +.++..+.+|+++.  +++.++++.+.++
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSH--GVRAEIRQLDLSDLPEGAQALDKLIQRLG   79 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            689999999999999999999999999998865 556677777776653  45788899999975  3566677777777


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +  +|++|||||....  .++.+.+.+++++++++|+.+++.+++++.|.|.+++.+++||++||..+..+.+..
T Consensus        80 ~--id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~~  150 (256)
T PRK12743         80 R--IDVLVNNAGAMTK--APFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTPLPGA  150 (256)
T ss_pred             C--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccCCCCCc
Confidence            5  5599999998754  347788999999999999999999999999999776543349999999887776643

>PRK07774 short chain dehydrogenase; Provisional

Probab=99.89  E-value=6.3e-22  Score=155.95  Aligned_cols=146  Identities=27%  Similarity=0.312  Sum_probs=119.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.+..++..+++...  ......+.+|+++..  ++..+.+.+.+
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--GGTAIAVQVDVSDPDSAKAMADATVSAF   81 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            56899999999999999999999999999999999987777777666542  345678899999753  45556666666


Q ss_pred             cCCCccEEEEeccccCC-cccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          129 EGLDVGVLINNVGISYP-YARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      +.  +|++|||||+... ...++.+.+.+++++.+++|+.+++.++++++|.|.+++.++ ||++||..++.+.
T Consensus        82 ~~--id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~~sS~~~~~~~  152 (250)
T PRK07774         82 GG--IDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGA-IVNQSSTAAWLYS  152 (250)
T ss_pred             CC--CCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcE-EEEEecccccCCc
Confidence            75  5699999998642 223467888999999999999999999999999998777677 9999998876544

>PRK08263 short chain dehydrogenase; Provisional

Probab=99.89  E-value=4.3e-22  Score=159.40  Aligned_cols=143  Identities=21%  Similarity=0.329  Sum_probs=118.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~  129 (206)
                      .+|+++||||++|||++++++|+++|++|++++|+.+++++..+..     +..+..+.+|+++..  ++.++.+.+.++
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   76 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFAAVETAVEHFG   76 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999988776655433     335677899998752  445566666666


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +  +|++|||||....  .++.+.+.+++++++++|+.+++.+++.++|.|++++.++ ||++||..+..+.|..
T Consensus        77 ~--~d~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~vsS~~~~~~~~~~  146 (275)
T PRK08263         77 R--LDIVVNNAGYGLF--GMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGH-IIQISSIGGISAFPMS  146 (275)
T ss_pred             C--CCEEEECCCCccc--cccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCE-EEEEcChhhcCCCCCc
Confidence            5  5599999998765  3478889999999999999999999999999998877777 9999999988887753

>PRK07454 short chain dehydrogenase; Provisional

Probab=99.89  E-value=5.4e-22  Score=155.68  Aligned_cols=146  Identities=29%  Similarity=0.436  Sum_probs=122.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~  129 (206)
                      ++|+++||||++|+|++++++|+++|++|++++|+.++.+++.++++..  +.++.++.+|+++..  ++.++.+.+.++
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST--GVKAAAYSIDLSNPEAIAPGIAELLEQFG   82 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC--CCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999998887777777553  456788999999752  445566666666


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +  +|++|||||....  .++.+.+.+++++++++|+.+++.+++.++|.|.+++.++ ||++||..+..+.+.+
T Consensus        83 ~--id~lv~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-iv~isS~~~~~~~~~~  152 (241)
T PRK07454         83 C--PDVLINNAGMAYT--GPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGL-IINVSSIAARNAFPQW  152 (241)
T ss_pred             C--CCEEEECCCccCC--CchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcE-EEEEccHHhCcCCCCc
Confidence            5  5699999998754  3477888999999999999999999999999998877777 9999999887776644

>PRK06523 short chain dehydrogenase; Provisional

Probab=99.89  E-value=3.4e-22  Score=158.49  Aligned_cols=139  Identities=23%  Similarity=0.345  Sum_probs=114.6

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      +++||+++||||++|||++++++|+++|++|++++|+.+..           ....+..+.+|+++..  ++.++++.+.
T Consensus         6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~-----------~~~~~~~~~~D~~~~~~~~~~~~~~~~~   74 (260)
T PRK06523          6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD-----------LPEGVEFVAADLTTAEGCAAVARAVLER   74 (260)
T ss_pred             CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh-----------cCCceeEEecCCCCHHHHHHHHHHHHHH
Confidence            46799999999999999999999999999999999986431           1335778899999752  4555666666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      +++  +|++|||||.......++.+.+.+++++.+++|+.|++.+++.++|+|.+++.++ ||++||..+..+.+
T Consensus        75 ~~~--id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~-ii~isS~~~~~~~~  146 (260)
T PRK06523         75 LGG--VDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGV-IIHVTSIQRRLPLP  146 (260)
T ss_pred             cCC--CCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcE-EEEEecccccCCCC
Confidence            665  5599999997643334577889999999999999999999999999998877777 99999999887754

>PRK08267 short chain dehydrogenase; Provisional

Probab=99.89  E-value=6.2e-22  Score=157.04  Aligned_cols=142  Identities=20%  Similarity=0.254  Sum_probs=117.1

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH-hcC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA-IEG  130 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~-~~~  130 (206)
                      |+++||||++|||++++++|+++|++|++++|+.++++++.+++.    +.++.++.+|+++..  ++.++.+.+. .+ 
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~-   76 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGG-   76 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence            689999999999999999999999999999999988777666542    456888999999752  3333444333 33 


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                       ++|++|||||....  .++.+.+.+++++++++|+.|++.+++++.|.|.+++.++ ||++||..+..+.+..
T Consensus        77 -~id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~isS~~~~~~~~~~  146 (260)
T PRK08267         77 -RLDVLFNNAGILRG--GPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGAR-VINTSSASAIYGQPGL  146 (260)
T ss_pred             -CCCEEEECCCCCCC--CccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCE-EEEeCchhhCcCCCCc
Confidence             46799999998765  3478889999999999999999999999999998877777 9999999888876643

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.89  E-value=5.8e-22  Score=156.05  Aligned_cols=147  Identities=27%  Similarity=0.367  Sum_probs=122.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      ++++++++||||++|||.+++++|+++|++|++++|+.++.++..+++..   +.++.++.+|+++..  ++.++++.+.
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALER   78 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999887777666543   456888999999752  4445555566


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +++  +|++|||||..... .++.+.+.+++++.+++|+.|++.+++.++|.|.+++.++ ||++||..+..+.+.
T Consensus        79 ~~~--~d~vi~~ag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~  150 (251)
T PRK07231         79 FGS--VDILVNNAGTTHRN-GPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGA-IVNVASTAGLRPRPG  150 (251)
T ss_pred             hCC--CCEEEECCCCCCCC-CChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcE-EEEEcChhhcCCCCC
Confidence            664  56999999986432 4577889999999999999999999999999998777677 999999988877664

>PRK06841 short chain dehydrogenase; Provisional

Probab=99.89  E-value=6.5e-22  Score=156.38  Aligned_cols=146  Identities=24%  Similarity=0.359  Sum_probs=118.5

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~  126 (206)
                      +++++|+++||||++|||.+++++|+++|++|++++|+.+.. +..+++    .+.++..+.+|+++..  ++.++.+.+
T Consensus        11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~-~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~   85 (255)
T PRK06841         11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA-EVAAQL----LGGNAKGLVCDVSDSQSVEAAVAAVIS   85 (255)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHh----hCCceEEEEecCCCHHHHHHHHHHHHH
Confidence            557899999999999999999999999999999999987642 222332    2345668899999752  455566666


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||....  .++.+.+.+++++++++|+.|++.+++++.|.|.+++.++ ||++||..+..+.|.+
T Consensus        86 ~~~~--~d~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~~  158 (255)
T PRK06841         86 AFGR--IDILVNSAGVALL--APAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGK-IVNLASQAGVVALERH  158 (255)
T ss_pred             HhCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCce-EEEEcchhhccCCCCC
Confidence            6664  5699999998754  3477888999999999999999999999999998877777 9999999888777754

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.89  E-value=7.8e-22  Score=156.36  Aligned_cols=146  Identities=25%  Similarity=0.407  Sum_probs=121.5

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      +++|+++||||+++||++++++|+++|++|++++|++++.++..+++++.  +.++..+.+|+++..  ++.++.+.+.+
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA--GGKAIGVAMDVTNEDAVNAGIDKVAERF   82 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc--CceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            56899999999999999999999999999999999998888888887663  456788999999752  44555666666


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhh-HhCCCCceEEEeccccccccccC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGM-LKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~-~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++  +|++|||||....  .++.+.+.+++++.+++|+.+++.+++.++|.| .+.+.++ ||++||..+..+.|.
T Consensus        83 ~~--~d~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~-iv~~ss~~~~~~~~~  153 (262)
T PRK13394         83 GS--VDILVSNAGIQIV--NPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGV-VIYMGSVHSHEASPL  153 (262)
T ss_pred             CC--CCEEEECCccCCC--CchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcE-EEEEcchhhcCCCCC
Confidence            64  5699999998754  336677889999999999999999999999999 6555666 999999888776653

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.89  E-value=5.1e-22  Score=157.17  Aligned_cols=140  Identities=26%  Similarity=0.429  Sum_probs=112.0

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++.+|+++||||++|||+++|++|+++|++|++++++.+..   .+++...    .+..+.+|+++.  .++.++.+.+
T Consensus         3 ~~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~---~~~l~~~----~~~~~~~Dl~~~~~~~~~~~~~~~   75 (255)
T PRK06463          3 MRFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENE---AKELREK----GVFTIKCDVGNRDQVKKSKEVVEK   75 (255)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHH---HHHHHhC----CCeEEEecCCCHHHHHHHHHHHHH
Confidence            345689999999999999999999999999999987765332   2223221    356789999975  2555666666


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      .+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.+++.++|.|.+++.++ ||++||..+..+
T Consensus        76 ~~~~--id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~-iv~isS~~~~~~  144 (255)
T PRK06463         76 EFGR--VDVLVNNAGIMYL--MPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGA-IVNIASNAGIGT  144 (255)
T ss_pred             HcCC--CCEEEECCCcCCC--CChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcE-EEEEcCHHhCCC
Confidence            6775  5599999998654  3477889999999999999999999999999998777677 999999887743

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.89  E-value=1.1e-21  Score=153.79  Aligned_cols=146  Identities=33%  Similarity=0.505  Sum_probs=122.2

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +.+++++||||++|||++++++|+++|++|++++|+.++.++..+++...  +.++.++.+|+++.  .++.++.+.+.+
T Consensus         5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (239)
T PRK07666          5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNEL   82 (239)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999999999999999998888777777542  45788899999875  244556666666


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++  +|++|||||....  .++.+.+.+++++.+++|+.|++.+++++.|.|.+++.++ +|++||..+..+.+.
T Consensus        83 ~~--id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~~ss~~~~~~~~~  152 (239)
T PRK07666         83 GS--IDILINNAGISKF--GKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGD-IINISSTAGQKGAAV  152 (239)
T ss_pred             CC--ccEEEEcCccccC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcE-EEEEcchhhccCCCC
Confidence            64  5699999998654  3367889999999999999999999999999998887777 999999988877664

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.89  E-value=9e-22  Score=155.57  Aligned_cols=146  Identities=27%  Similarity=0.393  Sum_probs=123.0

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      +++|+++||||+++||++++++|+++|++|++++|+.++.++..+++..  .+.++..+.+|+++..  ++.++.+.+.+
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK--AGGKAIGVAMDVTDEEAINAGIDYAVETF   79 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4579999999999999999999999999999999999888887777765  3556888999999752  44555666666


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++  +|++|||||.....  ++.+.+.+++++.+++|+.+++.+++.++|.|.+++.++ ||++||..+..+.++
T Consensus        80 ~~--~d~vi~~a~~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~iss~~~~~~~~~  149 (258)
T PRK12429         80 GG--VDILVNNAGIQHVA--PIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGR-IINMASVHGLVGSAG  149 (258)
T ss_pred             CC--CCEEEECCCCCCCC--ChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeE-EEEEcchhhccCCCC
Confidence            64  56999999987553  367888999999999999999999999999998887777 999999988877664

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.89  E-value=1.6e-22  Score=163.42  Aligned_cols=149  Identities=17%  Similarity=0.183  Sum_probs=106.7

Q ss_pred             cccCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHH--------hcCCc-----eEEEEEEec
Q 028656           49 LRKYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQA--------KYAKT-----QIKSVVVDF  113 (206)
Q Consensus        49 ~~~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~--------~~~~~-----~~~~~~~d~  113 (206)
                      .++.||+++||||+  +|||+++|++|+++|++|++.++.+ .++...+..+.        ...+.     ++..++.|+
T Consensus         4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~   82 (299)
T PRK06300          4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVP-IYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASF   82 (299)
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccc-hhhhhhhhcccccccccccccccchhhhhhHHHhhhhc
Confidence            45679999999996  9999999999999999999987652 11111111100        00000     111122232


Q ss_pred             CC--------------------CchHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHH
Q 028656          114 SG--------------------DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT  173 (206)
Q Consensus       114 ~~--------------------~~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~  173 (206)
                      ++                    ++++.++.+.+++++  +|++|||||.......++.+.+.++|++++++|+.|+++++
T Consensus        83 ~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~--lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~  160 (299)
T PRK06300         83 DTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGH--IDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLL  160 (299)
T ss_pred             CCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCC--CcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHH
Confidence            22                    135667777888886  45999999975432346889999999999999999999999


Q ss_pred             HHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          174 QAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       174 ~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++++|.|++  .|+ ||++||..+..+.|+
T Consensus       161 ~a~~p~m~~--~G~-ii~iss~~~~~~~p~  187 (299)
T PRK06300        161 SHFGPIMNP--GGS-TISLTYLASMRAVPG  187 (299)
T ss_pred             HHHHHHhhc--CCe-EEEEeehhhcCcCCC
Confidence            999999964  366 999999998887774

>PRK06057 short chain dehydrogenase; Provisional

Probab=99.89  E-value=7.1e-22  Score=156.36  Aligned_cols=142  Identities=24%  Similarity=0.306  Sum_probs=114.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      ++||+++||||++|||++++++++++|++|++++|+.++.++..+++.     .  ..+.+|+++.  .++.++.+.+.+
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~-----~--~~~~~D~~~~~~~~~~~~~~~~~~   77 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVG-----G--LFVPTDVTDEDAVNALFDTAAETY   77 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcC-----C--cEEEeeCCCHHHHHHHHHHHHHHc
Confidence            569999999999999999999999999999999999877666555431     1  4678899875  244455555555


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      ++  +|++|||||...+...++.+.+.+.+++.+++|+.|++.+++.++|.|++++.++ ||++||..+..+.+
T Consensus        78 ~~--id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~-iv~~sS~~~~~g~~  148 (255)
T PRK06057         78 GS--VDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGS-IINTASFVAVMGSA  148 (255)
T ss_pred             CC--CCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcE-EEEEcchhhccCCC
Confidence            54  5699999998754334577888999999999999999999999999998777777 99999987766553

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.89  E-value=4.6e-22  Score=157.78  Aligned_cols=141  Identities=17%  Similarity=0.254  Sum_probs=109.1

Q ss_pred             cCCcEEEEECC--CChHHHHHHHHHHHCCCcEEEEEcCh--hhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           51 KYGSWALVTGP--TDGIGKSFAFQLAKTGLNLVLVGRNP--DKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        51 ~~~k~vlItGa--s~giG~~~a~~l~~~g~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      +++|+++||||  ++|||+++|++|+++|++|++++|+.  +.++++.+++     +.++..+.+|++|.  +++.++.+
T Consensus         5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~i~~~~~~~   79 (256)
T PRK07889          5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL-----PEPAPVLELDVTNEEHLASLADRV   79 (256)
T ss_pred             ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc-----CCCCcEEeCCCCCHHHHHHHHHHH
Confidence            56899999999  89999999999999999999999864  3344444333     22467889999975  35566666


Q ss_pred             HHHhcCCCccEEEEeccccCCc--ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          125 KEAIEGLDVGVLINNVGISYPY--ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      .+.+++  +|++|||||+....  ..++.+.+.++|++++++|+.|++.+++.++|.|++  .|+ ||++||.. ..+.|
T Consensus        80 ~~~~g~--iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~--~g~-Iv~is~~~-~~~~~  153 (256)
T PRK07889         80 REHVDG--LDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNE--GGS-IVGLDFDA-TVAWP  153 (256)
T ss_pred             HHHcCC--CcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhccc--Cce-EEEEeecc-cccCC
Confidence            777775  55999999987431  124778899999999999999999999999999963  366 99998753 33444

>PRK08628 short chain dehydrogenase; Provisional

Probab=99.89  E-value=8.2e-22  Score=156.14  Aligned_cols=145  Identities=21%  Similarity=0.294  Sum_probs=116.5

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~  126 (206)
                      ++++||+++||||++|||++++++|+++|++|++++|+.+.. +..+++.+.  +.++..+.+|+++..  ++.++.+.+
T Consensus         3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (258)
T PRK08628          3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRAL--QPRAEFVQVDLTDDAQCRDAVEQTVA   79 (258)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999998776 566666553  456788999999752  444566666


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+++  +|++|||||.....  .+++.+ +++++.+++|+.+++.+++.++|.|.+. .++ ||++||..+..+.+.
T Consensus        80 ~~~~--id~vi~~ag~~~~~--~~~~~~-~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~-iv~~ss~~~~~~~~~  149 (258)
T PRK08628         80 KFGR--IDGLVNNAGVNDGV--GLEAGR-EAFVASLERNLIHYYVMAHYCLPHLKAS-RGA-IVNISSKTALTGQGG  149 (258)
T ss_pred             hcCC--CCEEEECCcccCCC--cccCCH-HHHHHHHhhhhHHHHHHHHHHHHHhhcc-CcE-EEEECCHHhccCCCC
Confidence            6664  55999999975432  244444 8999999999999999999999987654 466 999999988877654

>TIGR02415 23BDH acetoin reductases

Probab=99.89  E-value=1.6e-21  Score=154.02  Aligned_cols=145  Identities=26%  Similarity=0.305  Sum_probs=120.7

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEGL  131 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~  131 (206)
                      |+++||||++|||++++++|+++|++|++++|+.+++++..+++...  +.++..+.+|+++..  ++.++.+.+.+++ 
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~-   77 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQA--GGKAVAYKLDVSDKDQVFSAIDQAAEKFGG-   77 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence            68999999999999999999999999999999988888777777653  556888999999852  4455666666664 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                       +|++|||||....  .++.+.+.+++++.+++|+.+++.+++.+++.|.+++.++++|++||..+..+.|.+
T Consensus        78 -id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~  147 (254)
T TIGR02415        78 -FDVMVNNAGVAPI--TPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGNPIL  147 (254)
T ss_pred             -CCEEEECCCcCCC--CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCCCCC
Confidence             5699999998654  347788999999999999999999999999999877643349999999988877743

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK06196 oxidoreductase; Provisional

Probab=99.89  E-value=4.9e-22  Score=162.09  Aligned_cols=137  Identities=20%  Similarity=0.250  Sum_probs=110.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      .++++|+++||||++|||+++|++|+++|++|++++|+.++.++..+++.      .+..+.+|++|.  +++.++++.+
T Consensus        22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~~~~~~~~~   95 (315)
T PRK06196         22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID------GVEVVMLDLADLESVRAFAERFLD   95 (315)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHHHHHHHHHh
Confidence            34679999999999999999999999999999999999888777666553      256788999975  2344455555


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      .++  ++|++|||||+...    ..+.+.+++++.+++|+.|++.+++.++|.|.+++.++ ||++||..+.
T Consensus        96 ~~~--~iD~li~nAg~~~~----~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~-iV~vSS~~~~  160 (315)
T PRK06196         96 SGR--RIDILINNAGVMAC----PETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGAR-VVALSSAGHR  160 (315)
T ss_pred             cCC--CCCEEEECCCCCCC----CCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCe-EEEECCHHhc
Confidence            555  46699999998643    13456778999999999999999999999998776666 9999997654

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=99.89  E-value=1.6e-21  Score=154.56  Aligned_cols=146  Identities=23%  Similarity=0.332  Sum_probs=120.2

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||.+++++|+++|++|++++|+.++++...+++...  +.++..+.+|++|..  ++.++++.+.
T Consensus         9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~Dl~d~~~i~~~~~~~~~~   86 (259)
T PRK08213          9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL--GIDALWIAADVADEADIERLAEETLER   86 (259)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            367999999999999999999999999999999999998888777776553  456778999999852  4455666666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhh-hHhCCCCceEEEecccccccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPG-MLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~-~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      +++  +|++|||||....  .+..+.+.+.|++++++|+.+++.+++++.|. |.+++.++ +|++||..+..+.+
T Consensus        87 ~~~--id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~-~v~~sS~~~~~~~~  157 (259)
T PRK08213         87 FGH--VDILVNNAGATWG--APAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGR-IINVASVAGLGGNP  157 (259)
T ss_pred             hCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeE-EEEECChhhccCCC
Confidence            664  5699999998654  33677889999999999999999999999998 66655566 99999988776655

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=99.89  E-value=1.4e-21  Score=153.84  Aligned_cols=146  Identities=27%  Similarity=0.402  Sum_probs=121.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +++|+++||||+++||++++++|+++|++|++++|+.+..+++.+++...  +.++..+.+|+++.  .++.++.+.+.+
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK--GGNAQAFACDITDRDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999999999999999998888777776553  45688899999975  245556666666


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++  +|++|||||....  .++.+.+.+++++.+++|+.+++.++++++|.|.+.+.++ ||++||..+..+.+.
T Consensus        79 ~~--~d~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-ii~iss~~~~~~~~~  148 (250)
T TIGR03206        79 GP--VDVLVNNAGWDKF--GPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGR-IVNIASDAARVGSSG  148 (250)
T ss_pred             CC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeE-EEEECchhhccCCCC
Confidence            64  5699999998654  3477788999999999999999999999999998777777 999999988877664

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK12939 short chain dehydrogenase; Provisional

Probab=99.88  E-value=1.5e-21  Score=153.59  Aligned_cols=146  Identities=23%  Similarity=0.363  Sum_probs=122.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+++++++..++++..  +.++..+.+|+++..  ++.++.+.+.+
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA--GGRAHAIAADLADPASVQRFFDAAAAAL   82 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            56899999999999999999999999999999999998888887777653  456788899998752  44455555555


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++  +|++|||+|.....  ++.+.+.+++++.+++|+.+++.+++.+.|.|.+++.|+ +|++||..+..+.+.
T Consensus        83 ~~--id~vi~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~  152 (250)
T PRK12939         83 GG--LDGLVNNAGITNSK--SATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGR-IVNLASDTALWGAPK  152 (250)
T ss_pred             CC--CCEEEECCCCCCCC--ChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeE-EEEECchhhccCCCC
Confidence            54  66999999987653  477889999999999999999999999999998877777 999999888877664

>PRK07069 short chain dehydrogenase; Validated

Probab=99.88  E-value=1.6e-21  Score=153.65  Aligned_cols=144  Identities=20%  Similarity=0.303  Sum_probs=119.0

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcC-hhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcCCC
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEGLD  132 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~  132 (206)
                      ++||||++|||++++++|+++|++|++++|+ .+.+++..+++...........+.+|+++..  ++.++++.+.+++  
T Consensus         2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~--   79 (251)
T PRK07069          2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGG--   79 (251)
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCC--
Confidence            7999999999999999999999999999998 6677777777655433345566889999752  4555666777775  


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +|++|||||....  .++.+.+.+++++++++|+.+++.+++.++|.|++++.++ ||++||..+..+.|..
T Consensus        80 id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-ii~~ss~~~~~~~~~~  148 (251)
T PRK07069         80 LSVLVNNAGVGSF--GAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPAS-IVNISSVAAFKAEPDY  148 (251)
T ss_pred             ccEEEECCCcCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcE-EEEecChhhccCCCCC
Confidence            5599999998765  3477889999999999999999999999999998877777 9999999988776654

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=99.88  E-value=2.2e-21  Score=152.84  Aligned_cols=150  Identities=25%  Similarity=0.317  Sum_probs=121.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc----hHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL----DEGVERIK  125 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~~  125 (206)
                      .+++|+++||||++|||.+++++|+++|++|++++|+.++.++..+++.+.. ..++.++.+|+.+..    .+..+.+.
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG-GPQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC-CCCceEEEecccCCCHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999988888777776542 334566667775322    34445555


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +.+++  +|++|||||..... .++.+.+.+++++.+++|+.|++.++++++|.|.+++.++ ||++||..+..+.+..
T Consensus        88 ~~~~~--id~vi~~Ag~~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~-iv~~ss~~~~~~~~~~  162 (247)
T PRK08945         88 EQFGR--LDGVLHNAGLLGEL-GPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAAS-LVFTSSSVGRQGRANW  162 (247)
T ss_pred             HHhCC--CCEEEECCcccCCC-CCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCE-EEEEccHhhcCCCCCC
Confidence            55664  66999999986542 3467888999999999999999999999999998877777 9999999888776654

>PRK06949 short chain dehydrogenase; Provisional

Probab=99.88  E-value=2.5e-21  Score=153.16  Aligned_cols=149  Identities=27%  Similarity=0.395  Sum_probs=121.8

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~  125 (206)
                      ..++.+|+++||||++|||++++++|+++|++|++++|+.++++++.+++...  +.++..+.+|+++..  ++.++++.
T Consensus         4 ~~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   81 (258)
T PRK06949          4 SINLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE--GGAAHVVSLDVTDYQSIKAAVAHAE   81 (258)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHH
Confidence            44577999999999999999999999999999999999999888887777553  346788999998752  44445555


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC--------CceEEEeccccc
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK--------GLSMLNIGKAEL  197 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--------g~~iv~isS~~~  197 (206)
                      +.+++  +|++|||||....  .++.+.+.+++++++++|+.+++.++++++|.|.++..        ++ +|++||..+
T Consensus        82 ~~~~~--~d~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-iv~~sS~~~  156 (258)
T PRK06949         82 TEAGT--IDILVNNSGVSTT--QKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGR-IINIASVAG  156 (258)
T ss_pred             HhcCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeE-EEEECcccc
Confidence            55554  5699999998654  34677888999999999999999999999999876642        45 999999988


Q ss_pred             cccccC
Q 028656          198 MCSVRF  203 (206)
Q Consensus       198 ~~~~~~  203 (206)
                      ..+.|.
T Consensus       157 ~~~~~~  162 (258)
T PRK06949        157 LRVLPQ  162 (258)
T ss_pred             cCCCCC
Confidence            776653

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.88  E-value=1.8e-21  Score=154.09  Aligned_cols=147  Identities=20%  Similarity=0.248  Sum_probs=116.7

Q ss_pred             ccCCcEEEEECCCC--hHHHHHHHHHHHCCCcEEEEEcC-----------hhhHHHHHHHHHHhcCCceEEEEEEecCCC
Q 028656           50 RKYGSWALVTGPTD--GIGKSFAFQLAKTGLNLVLVGRN-----------PDKLKDVSDSIQAKYAKTQIKSVVVDFSGD  116 (206)
Q Consensus        50 ~~~~k~vlItGas~--giG~~~a~~l~~~g~~V~~~~r~-----------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (206)
                      ++++|+++||||++  |||.+++++|+++|++|++++|+           .+......+++..  .+.++.++++|+++.
T Consensus         2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~   79 (256)
T PRK12748          2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIES--YGVRCEHMEIDLSQP   79 (256)
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHh--cCCeEEEEECCCCCH
Confidence            45689999999994  99999999999999999999987           2222223344433  245688899999975


Q ss_pred             c--hHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          117 L--DEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       117 ~--~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      .  +..++++.+.+++  +|++|||||+...  .++.+.+.+++++.+++|+.|++.+.++++|.|.+++.++ ||++||
T Consensus        80 ~~~~~~~~~~~~~~g~--id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~~ss  154 (256)
T PRK12748         80 YAPNRVFYAVSERLGD--PSILINNAAYSTH--TRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGR-IINLTS  154 (256)
T ss_pred             HHHHHHHHHHHHhCCC--CCEEEECCCcCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeE-EEEECC
Confidence            2  4555666666665  5599999998654  3477889999999999999999999999999987766677 999999


Q ss_pred             ccccccccC
Q 028656          195 AELMCSVRF  203 (206)
Q Consensus       195 ~~~~~~~~~  203 (206)
                      ..+..+.|.
T Consensus       155 ~~~~~~~~~  163 (256)
T PRK12748        155 GQSLGPMPD  163 (256)
T ss_pred             ccccCCCCC
Confidence            988877664

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=99.88  E-value=2.4e-21  Score=152.48  Aligned_cols=146  Identities=24%  Similarity=0.321  Sum_probs=119.2

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-ChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      +++|+++||||++|||.+++++|+++|++|++..+ +++..++..+++...  +.++.++.+|+++..  ++.++++.+.
T Consensus         4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (247)
T PRK12935          4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKE--GHDVYAVQADVSKVEDANRLVEEAVNH   81 (247)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999999999987654 556666666666542  456888999999852  5556666666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +++  +|++|||||.....  .+.+.+.+++++.+++|+.+++.++++++|.|.+++.++ +|++||..+..+.++
T Consensus        82 ~~~--id~vi~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~  152 (247)
T PRK12935         82 FGK--VDILVNNAGITRDR--TFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGR-IISISSIIGQAGGFG  152 (247)
T ss_pred             cCC--CCEEEECCCCCCCC--ChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcE-EEEEcchhhcCCCCC
Confidence            664  56999999987553  367888899999999999999999999999998777777 999999988776553

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=99.88  E-value=9e-22  Score=156.63  Aligned_cols=141  Identities=23%  Similarity=0.322  Sum_probs=115.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.++.+           ..++..+.+|+++.  .++.++.+.+.
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~~~~~~~~~~~~   74 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ-----------HENYQFVPTDVSSAEEVNHTVAEIIEK   74 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc-----------cCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999876532           23567889999985  25555666666


Q ss_pred             hcCCCccEEEEeccccCCcc-------cccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          128 IEGLDVGVLINNVGISYPYA-------RFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~-------~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      +++  +|++|||||...+..       .++.+.+.++|++++++|+.+++.+++++.|.|.+++.++ ||++||..+..+
T Consensus        75 ~g~--id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~  151 (266)
T PRK06171         75 FGR--IDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGV-IVNMSSEAGLEG  151 (266)
T ss_pred             cCC--CCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcE-EEEEccccccCC
Confidence            675  559999999864321       1245678999999999999999999999999998877777 999999998877


Q ss_pred             ccCC
Q 028656          201 VRFH  204 (206)
Q Consensus       201 ~~~~  204 (206)
                      .+.+
T Consensus       152 ~~~~  155 (266)
T PRK06171        152 SEGQ  155 (266)
T ss_pred             CCCC
Confidence            7643

>PRK06483 dihydromonapterin reductase; Provisional

Probab=99.88  E-value=1.5e-21  Score=152.76  Aligned_cols=139  Identities=15%  Similarity=0.169  Sum_probs=110.8

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~  130 (206)
                      +|+++||||++|||++++++|+++|++|++++|+.++..   ++++..  +  +..+.+|+++.  +++.++.+.+.+++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~~--~--~~~~~~D~~~~~~~~~~~~~~~~~~~~   74 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAI---DGLRQA--G--AQCIQADFSTNAGIMAFIDELKQHTDG   74 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHH---HHHHHc--C--CEEEEcCCCCHHHHHHHHHHHHhhCCC
Confidence            579999999999999999999999999999999876432   233321  2  46788999875  25555666666664


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC--CCceEEEeccccccccccC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK--KGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~~iv~isS~~~~~~~~~  203 (206)
                        +|++|||||.....  .+.+.+.++|++++++|+.+++.+++.++|.|.+++  .++ ||++||..+..+.|.
T Consensus        75 --id~lv~~ag~~~~~--~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~-iv~~ss~~~~~~~~~  144 (236)
T PRK06483         75 --LRAIIHNASDWLAE--KPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASD-IIHITDYVVEKGSDK  144 (236)
T ss_pred             --ccEEEECCccccCC--CcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCce-EEEEcchhhccCCCC
Confidence              56999999986442  256778999999999999999999999999998765  456 999999988777664

>PRK05875 short chain dehydrogenase; Provisional

Probab=99.88  E-value=2.8e-21  Score=154.54  Aligned_cols=150  Identities=23%  Similarity=0.292  Sum_probs=122.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.++.++..+++.......++..+.+|+++..  ++.++++.+.
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAW   83 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46689999999999999999999999999999999998887777776654332356788899999753  4455666666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +++  +|++|||||.... ..++.+.+.+++++++++|+.+++.+++++.+.|.+++.++ |+++||..+..+.|.
T Consensus        84 ~~~--~d~li~~ag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~-iv~~sS~~~~~~~~~  155 (276)
T PRK05875         84 HGR--LHGVVHCAGGSET-IGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGS-FVGISSIAASNTHRW  155 (276)
T ss_pred             cCC--CCEEEECCCcccC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcE-EEEEechhhcCCCCC
Confidence            665  5599999997643 13467788999999999999999999999999998777677 999999988776653

>PRK07775 short chain dehydrogenase; Provisional

Probab=99.88  E-value=3.3e-21  Score=154.28  Aligned_cols=147  Identities=25%  Similarity=0.420  Sum_probs=120.6

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      +..+|+++||||++|||++++++|+++|++|++++|+.+++++..+++...  +.++..+.+|+++..  ++.++.+.+.
T Consensus         7 ~~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (274)
T PRK07775          7 HPDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRAD--GGEAVAFPLDVTDPDSVKSFVAQAEEA   84 (274)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            356789999999999999999999999999999999988777766666543  346788899999752  3444555555


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +++  +|++|||||.....  ++.+.+.+++++.+++|+.|++.++++++|.|.+++.++ ||++||..+..+.|.
T Consensus        85 ~~~--id~vi~~Ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~-iv~isS~~~~~~~~~  155 (274)
T PRK07775         85 LGE--IEVLVSGAGDTYFG--KLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGD-LIFVGSDVALRQRPH  155 (274)
T ss_pred             cCC--CCEEEECCCcCCCc--ccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCce-EEEECChHhcCCCCC
Confidence            564  56999999986543  366788899999999999999999999999998877777 999999988877664

>PRK08226 short chain dehydrogenase; Provisional

Probab=99.88  E-value=2.5e-21  Score=153.75  Aligned_cols=144  Identities=28%  Similarity=0.437  Sum_probs=116.2

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.+ ..+..+++..  .+.++..+.+|+++.  +++.++++.+.+
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   80 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCG--RGHRCTAVVADVRDPASVAAAIKRAKEKE   80 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHH--hCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            56899999999999999999999999999999999874 3344444443  245678889999975  355566667666


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc-cccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM-CSVR  202 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~-~~~~  202 (206)
                      ++  +|++|||||....  .++.+.+.+++++.+++|+.|++.++++++|.|.+++.++ ||++||..+. .+.|
T Consensus        81 ~~--id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-iv~isS~~~~~~~~~  150 (263)
T PRK08226         81 GR--IDILVNNAGVCRL--GSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGR-IVMMSSVTGDMVADP  150 (263)
T ss_pred             CC--CCEEEECCCcCCC--CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcE-EEEECcHHhcccCCC
Confidence            65  5599999998654  3477888999999999999999999999999988776677 9999998774 3434

>PRK06482 short chain dehydrogenase; Provisional

Probab=99.88  E-value=2.3e-21  Score=155.15  Aligned_cols=141  Identities=19%  Similarity=0.297  Sum_probs=115.3

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~  130 (206)
                      .|+++||||++|||++++++|+++|++|++++|+.+.++++.+..     +.++.++.+|+++..  ++.++++.+.+++
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY-----GDRLWVLQLDVTDSAAVRAVVDRAFAALGR   76 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999999999999987766554432     235778899999862  3444555555664


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                        +|++|||||.....  +..+.+.+++++.+++|+.|++.++++++|.|++++.++ ||++||..+..+.|.
T Consensus        77 --id~vi~~ag~~~~~--~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~  144 (276)
T PRK06482         77 --IDVVVSNAGYGLFG--AAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGR-IVQVSSEGGQIAYPG  144 (276)
T ss_pred             --CCEEEECCCCCCCc--ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCE-EEEEcCcccccCCCC
Confidence              56999999987653  367788899999999999999999999999998777777 999999888776663

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=99.88  E-value=2.7e-21  Score=151.74  Aligned_cols=143  Identities=25%  Similarity=0.369  Sum_probs=117.4

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +++++++||||++|||++++++|+++|+.|++.+|+.+++++..+++     +.++....+|+++.  .++.++++.+.+
T Consensus         4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (245)
T PRK12936          4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL-----GERVKIFPANLSDRDEVKALGQKAEADL   78 (245)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            56899999999999999999999999999999999988777655443     33567888999975  244455666666


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++  +|++|||||...+.  ++.+.+.+++++++++|+.+++.+++++.+.+++++.++ ||++||..+..+.|.
T Consensus        79 ~~--id~vi~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~  148 (245)
T PRK12936         79 EG--VDILVNNAGITKDG--LFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGR-IINITSVVGVTGNPG  148 (245)
T ss_pred             CC--CCEEEECCCCCCCC--ccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCE-EEEECCHHhCcCCCC
Confidence            64  56999999987653  367788899999999999999999999999887776676 999999988877664

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=99.88  E-value=2.3e-21  Score=172.16  Aligned_cols=152  Identities=20%  Similarity=0.278  Sum_probs=126.4

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ..+++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++....+...+..+.+|+++.  +++.++++.+
T Consensus       410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~  489 (676)
T TIGR02632       410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVAL  489 (676)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            34679999999999999999999999999999999999988888777776544445677889999975  3556666777


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||....  .++.+.+.++|+..+++|+.+++.+++.++|.|++++.+++||++||..+..+.|++
T Consensus       490 ~~g~--iDilV~nAG~~~~--~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~~~~  563 (676)
T TIGR02632       490 AYGG--VDIVVNNAGIATS--SPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAGKNA  563 (676)
T ss_pred             hcCC--CcEEEECCCCCCC--CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCCCCC
Confidence            7775  5599999998654  347788999999999999999999999999999877644449999999888877753

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.88  E-value=6.1e-22  Score=147.95  Aligned_cols=141  Identities=21%  Similarity=0.274  Sum_probs=114.9

Q ss_pred             CCcEEEEECCC-ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           52 YGSWALVTGPT-DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        52 ~~k~vlItGas-~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      ..|.|+|||++ ||||.+++++++++|+.|+.++|..++..++..+.       .+....+|++++.  .+...++.+. 
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~-------gl~~~kLDV~~~~~V~~v~~evr~~-   77 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF-------GLKPYKLDVSKPEEVVTVSGEVRAN-   77 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh-------CCeeEEeccCChHHHHHHHHHHhhC-
Confidence            35789999888 99999999999999999999999999887766543       3678899999762  2222344432 


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +.-.+|.++||||..-.  .|..|.+.++.+++|++|++|++.++|++.. +.-+.+|. |||++|..++.|.|+.
T Consensus        78 ~~Gkld~L~NNAG~~C~--~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h-~likaKGt-IVnvgSl~~~vpfpf~  149 (289)
T KOG1209|consen   78 PDGKLDLLYNNAGQSCT--FPALDATIAAVEQCFKVNVFGHIRMCRALSH-FLIKAKGT-IVNVGSLAGVVPFPFG  149 (289)
T ss_pred             CCCceEEEEcCCCCCcc--cccccCCHHHHHhhhccceeeeehHHHHHHH-HHHHccce-EEEecceeEEeccchh
Confidence            33367899999998643  5588999999999999999999999999995 55566788 9999999999999864

>PRK06500 short chain dehydrogenase; Provisional

Probab=99.88  E-value=3.2e-21  Score=151.70  Aligned_cols=141  Identities=21%  Similarity=0.284  Sum_probs=114.9

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++     +.++..+++|+++..  ++.++.+.+.+
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL-----GESALVIRADAGDVAAQKALAQALAEAF   78 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999999987766655544     345778899998752  34456666666


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++  +|++|||||....  .++.+.+.+++++++++|+.|++.+++++.|.|.+  .++ +|++||.++..+.|.
T Consensus        79 ~~--id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~-~i~~~S~~~~~~~~~  146 (249)
T PRK06500         79 GR--LDAVFINAGVAKF--APLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLAN--PAS-IVLNGSINAHIGMPN  146 (249)
T ss_pred             CC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc--CCE-EEEEechHhccCCCC
Confidence            65  5599999998754  34778899999999999999999999999998743  356 999999888777664

>PRK09134 short chain dehydrogenase; Provisional

Probab=99.88  E-value=6.3e-21  Score=151.16  Aligned_cols=146  Identities=18%  Similarity=0.219  Sum_probs=117.9

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-ChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      ..+|+++||||++|||++++++|+++|++|+++++ +.+..+++.+++...  +.++..+.+|++|..  ++.++++.+.
T Consensus         7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~~   84 (258)
T PRK09134          7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRAL--GRRAVALQADLADEAEVRALVARASAA   84 (258)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999999999988776 455666666666543  456788999999852  4455566666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +++  +|++|||||.....  ++.+.+.+++++++++|+.|++.+++++.|.|.+.+.+. ||+++|..+..+.|.
T Consensus        85 ~~~--iD~vi~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~~~s~~~~~~~p~  155 (258)
T PRK09134         85 LGP--ITLLVNNASLFEYD--SAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGL-VVNMIDQRVWNLNPD  155 (258)
T ss_pred             cCC--CCEEEECCcCCCCC--ccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCce-EEEECchhhcCCCCC
Confidence            664  66999999987553  477889999999999999999999999999988776677 999999877766664

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.87  E-value=3.7e-21  Score=170.97  Aligned_cols=147  Identities=25%  Similarity=0.366  Sum_probs=122.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+.++++.+++...  +.++..+.+|+++..  ++.++.+.+.
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~  445 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAK--GGTAHAYTCDLTDSAAVDHTVKDILAE  445 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence            467999999999999999999999999999999999999888888877653  456888999999852  5556666677


Q ss_pred             hcCCCccEEEEeccccCCcccccccC--CHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEV--DQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~--~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +++  +|++|||||......  +.+.  +.+++++++++|+.|++.+++.++|.|++++.++ ||++||.++..+.|.
T Consensus       446 ~g~--id~li~~Ag~~~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~  518 (657)
T PRK07201        446 HGH--VDYLVNNAGRSIRRS--VENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGH-VVNVSSIGVQTNAPR  518 (657)
T ss_pred             cCC--CCEEEECCCCCCCCC--hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCE-EEEECChhhcCCCCC
Confidence            775  559999999864322  3222  3578999999999999999999999998887777 999999998887764

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=99.87  E-value=6.1e-21  Score=150.46  Aligned_cols=141  Identities=25%  Similarity=0.426  Sum_probs=115.0

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEGL  131 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~  131 (206)
                      ++++||||++|||.+++++|+++|++|++++|++++++++.+.+     +.++..+.+|+++..  ++.++.+.+.+++ 
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~-   74 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLPAEWRN-   74 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----ccceEEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence            36899999999999999999999999999999988777665543     335778899999752  4445555555564 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                       +|++|||||..... .++.+.+.+++++++++|+.|++.+++.++|.|.+++.++ ||++||..+..+.++
T Consensus        75 -id~vi~~ag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~isS~~~~~~~~~  143 (248)
T PRK10538         75 -IDVLVNNAGLALGL-EPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGH-IINIGSTAGSWPYAG  143 (248)
T ss_pred             -CCEEEECCCccCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcE-EEEECCcccCCCCCC
Confidence             56999999976421 3467889999999999999999999999999998877777 999999988776654

>PRK09291 short chain dehydrogenase; Provisional

Probab=99.87  E-value=6.8e-21  Score=150.63  Aligned_cols=140  Identities=24%  Similarity=0.340  Sum_probs=115.7

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      +|+++||||++|||++++++|+++|++|++++|+.+..+++.+.....  +..+....+|+++.  +.++.   .... +
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~--~~~~~---~~~~-~   73 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR--GLALRVEKLDLTDA--IDRAQ---AAEW-D   73 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeeCCCH--HHHHH---HhcC-C
Confidence            578999999999999999999999999999999988777766655543  34577889999986  33332   2222 5


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +|++|||||....  .++.+.+.+++++.+++|+.+++.+++.++|.+.+++.++ ||++||..+..+.|+
T Consensus        74 id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-iv~~SS~~~~~~~~~  141 (257)
T PRK09291         74 VDVLLNNAGIGEA--GAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGK-VVFTSSMAGLITGPF  141 (257)
T ss_pred             CCEEEECCCcCCC--cCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCce-EEEEcChhhccCCCC
Confidence            6799999998765  3578899999999999999999999999999998887777 999999988777664

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.87  E-value=9.8e-21  Score=149.64  Aligned_cols=147  Identities=21%  Similarity=0.282  Sum_probs=117.1

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh-hhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhc
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-DKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIE  129 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~  129 (206)
                      .|+++||||++|||.+++++|+++|++|++++|+. +..++..+.++.  .+.++.++.+|+++..  ++.++.+.+.++
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRA--LGVEVIFFPADVADLSAHEAMLDAAQAAWG   79 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHh--cCCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            47899999999999999999999999999999864 445555555544  2456888899999852  445566666666


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC-----CceEEEeccccccccccC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK-----GLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-----g~~iv~isS~~~~~~~~~  203 (206)
                      +  +|++|||||...+..+++.+.+.+++++.+++|+.+++.+.+++.|.|.+++.     .++||++||..+..+.+.
T Consensus        80 ~--id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~  156 (256)
T PRK12745         80 R--IDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVSPN  156 (256)
T ss_pred             C--CCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCCCC
Confidence            5  56999999987554455788899999999999999999999999999986643     234999999988776653

>PRK06701 short chain dehydrogenase; Provisional

Probab=99.87  E-value=9.7e-21  Score=152.84  Aligned_cols=148  Identities=21%  Similarity=0.335  Sum_probs=118.6

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh-hHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD-KLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERI  124 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~  124 (206)
                      ..++++|+++||||++|||.+++++|+++|++|++++|+.+ ..++..+.++.  .+.++.++.+|+++..  ++.++.+
T Consensus        41 ~~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~i  118 (290)
T PRK06701         41 SGKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEK--EGVKCLLIPGDVSDEAFCKDAVEET  118 (290)
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHh--cCCeEEEEEccCCCHHHHHHHHHHH
Confidence            34577999999999999999999999999999999999864 35555555543  2456788999999752  4555666


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+.+++  +|++|||||..... .++.+.+.+++++++++|+.+++.++++++|.|.+  .++ ||++||..+..+.+.
T Consensus       119 ~~~~~~--iD~lI~~Ag~~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~--~g~-iV~isS~~~~~~~~~  191 (290)
T PRK06701        119 VRELGR--LDILVNNAAFQYPQ-QSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQ--GSA-IINTGSITGYEGNET  191 (290)
T ss_pred             HHHcCC--CCEEEECCcccCCC-CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhh--CCe-EEEEecccccCCCCC
Confidence            666665  55999999986432 34778899999999999999999999999998843  356 999999998877664

>PRK06123 short chain dehydrogenase; Provisional

Probab=99.87  E-value=1.2e-20  Score=148.38  Aligned_cols=145  Identities=21%  Similarity=0.291  Sum_probs=115.8

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEE-cChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhc
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIE  129 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~  129 (206)
                      +|+++||||++|||.+++++|+++|++|++.. |+++..++..+++...  +.++..+.+|+++..  ++.++.+.+.++
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQ--GGEALAVAADVADEADVLRLFEAVDRELG   79 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhC--CCcEEEEEeccCCHHHHHHHHHHHHHHhC
Confidence            57899999999999999999999999998887 4555566666666543  445778899999852  455566666677


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC---CCceEEEeccccccccccC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK---KGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---~g~~iv~isS~~~~~~~~~  203 (206)
                      +  +|++|||||..... .++.+.+.+++++++++|+.+++.++++++|.|.++.   .|. ||++||.++..+.|.
T Consensus        80 ~--id~li~~ag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~-iv~~sS~~~~~~~~~  152 (248)
T PRK06123         80 R--LDALVNNAGILEAQ-MRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGA-IVNVSSMAARLGSPG  152 (248)
T ss_pred             C--CCEEEECCCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeE-EEEECchhhcCCCCC
Confidence            5  55999999987542 2467889999999999999999999999999987553   345 999999988887774

>PRK06198 short chain dehydrogenase; Provisional

Probab=99.87  E-value=1.4e-20  Score=149.12  Aligned_cols=146  Identities=28%  Similarity=0.350  Sum_probs=120.2

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCc-EEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLN-LVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      +++|+++||||++|||++++++|+++|++ |++++|+.++.++..+++..  .+.++..+.+|+++..  ++.++.+.+.
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEA--LGAKAVFVQADLSDVEDCRRVVAAADEA   81 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHh--cCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999 99999998877777666644  3557788899999752  4455666666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC-CceEEEeccccccccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK-GLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~~iv~isS~~~~~~~~~  203 (206)
                      +++  +|++|||||....  .++.+.+.+++++++++|+.|++.++++++|.|.+++. ++ +|++||..+..+.|+
T Consensus        82 ~g~--id~li~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~-iv~~ss~~~~~~~~~  153 (260)
T PRK06198         82 FGR--LDALVNAAGLTDR--GTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGT-IVNIGSMSAHGGQPF  153 (260)
T ss_pred             hCC--CCEEEECCCcCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCE-EEEECCcccccCCCC
Confidence            664  5699999998754  34678899999999999999999999999999977653 55 999999988776654

>PRK12937 short chain dehydrogenase; Provisional

Probab=99.87  E-value=1e-20  Score=148.48  Aligned_cols=146  Identities=19%  Similarity=0.245  Sum_probs=118.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh-hhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-DKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++++|+++||||++|||++++++|+++|++|+++.|+. +..++..+++...  +.++..+.+|+++.  .++.++++.+
T Consensus         2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (245)
T PRK12937          2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAA--GGRAIAVQADVADAAAVTRLFDAAET   79 (245)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            35689999999999999999999999999998887754 3455666666543  55788899999975  3566677777


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+...  .++.+.+.+++++++++|+.|++.++++++|.|.+  .++ ||++||..+..+.|.+
T Consensus        80 ~~~~--id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~~~-iv~~ss~~~~~~~~~~  150 (245)
T PRK12937         80 AFGR--IDVLVNNAGVMPL--GTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQ--GGR-IINLSTSVIALPLPGY  150 (245)
T ss_pred             HcCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhcc--CcE-EEEEeeccccCCCCCC
Confidence            7775  5599999998654  34778899999999999999999999999998843  356 9999998888777654

>PRK06101 short chain dehydrogenase; Provisional

Probab=99.87  E-value=8.9e-21  Score=148.89  Aligned_cols=137  Identities=23%  Similarity=0.301  Sum_probs=109.3

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      ++++||||++|||++++++|+++|++|++++|+.++++++.++      ..++..+.+|+++.  +.++++.+.... .+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~--~~~~~~~~~~~~-~~   72 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ------SANIFTLAFDVTDH--PGTKAALSQLPF-IP   72 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh------cCCCeEEEeeCCCH--HHHHHHHHhccc-CC
Confidence            6899999999999999999999999999999998776654432      23467889999986  555555555543 46


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      |.+|||||.....  +..+.+.+++++++++|+.|++++++++.|.|.+  .++ ||++||..+..+.|..
T Consensus        73 d~~i~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~-iv~isS~~~~~~~~~~  138 (240)
T PRK06101         73 ELWIFNAGDCEYM--DDGKVDATLMARVFNVNVLGVANCIEGIQPHLSC--GHR-VVIVGSIASELALPRA  138 (240)
T ss_pred             CEEEEcCcccccC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCe-EEEEechhhccCCCCC
Confidence            7999999875432  2446788999999999999999999999998843  355 9999999988887743

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=99.87  E-value=1.5e-20  Score=148.07  Aligned_cols=145  Identities=20%  Similarity=0.289  Sum_probs=115.1

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEE-cChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhc
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIE  129 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~  129 (206)
                      .|+++||||++|||.+++++|+++|++|+++. |+.++.++..++++.  .+.++..+.||+++..  ++.++++.+.++
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRA--AGGRACVVAGDVANEADVIAMFDAVQSAFG   79 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh--cCCcEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            36899999999999999999999999998765 666777777776655  2456888999999752  344455555555


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC---CCceEEEeccccccccccC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK---KGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---~g~~iv~isS~~~~~~~~~  203 (206)
                      +  +|++|||||...+. .++.+.+.+++++++++|+.+++.+++.++|.|..++   .++ ||++||..+..+.+.
T Consensus        80 ~--id~li~~ag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~-ii~~sS~~~~~~~~~  152 (248)
T PRK06947         80 R--LDALVNNAGIVAPS-MPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGA-IVNVSSIASRLGSPN  152 (248)
T ss_pred             C--CCEEEECCccCCCC-CChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcE-EEEECchhhcCCCCC
Confidence            4  66999999987542 3467889999999999999999999999999887554   345 999999988777653

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=99.87  E-value=1.5e-20  Score=147.23  Aligned_cols=143  Identities=26%  Similarity=0.297  Sum_probs=116.4

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-ChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEG  130 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~  130 (206)
                      |+++||||++|||++++++|+++|++|++++| +.++.++..++....  +.++..+.+|+++..  ++.++.+.+.+++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGAL--GFDFRVVEGDVSSFESCKAAVAKVEAELGP   78 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhh--CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999988 555566555555432  456888999999752  4455666666664


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                        +|++|||||...+.  ++.+.+.+++++.+++|+.+++.+++.++|.|.+++.++ ||++||..+..+.++
T Consensus        79 --id~vi~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-iv~iss~~~~~~~~~  146 (242)
T TIGR01829        79 --IDVLVNNAGITRDA--TFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGR-IINISSVNGQKGQFG  146 (242)
T ss_pred             --CcEEEECCCCCCCC--ChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcE-EEEEcchhhcCCCCC
Confidence              56999999987653  477889999999999999999999999999998877777 999999887776653

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.86  E-value=1.3e-20  Score=147.84  Aligned_cols=148  Identities=29%  Similarity=0.432  Sum_probs=122.7

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEE-EcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~  126 (206)
                      ++.+|+++||||+++||.+++++|+++|++|+++ +|+.++.++..+.+..  .+.++....+|+++..  ++.++.+.+
T Consensus         2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (247)
T PRK05565          2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKE--EGGDAIAVKADVSSEEDVENLVEQIVE   79 (247)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999 9998888777777655  2456788999999752  445566666


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||+|....  .++.+.+.+++++.+++|+.+++.+.+.+.|.+.+++.++ +|++||..+..+.+..
T Consensus        80 ~~~~--id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-~v~~sS~~~~~~~~~~  152 (247)
T PRK05565         80 KFGK--IDILVNNAGISNF--GLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGV-IVNISSIWGLIGASCE  152 (247)
T ss_pred             HhCC--CCEEEECCCcCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcE-EEEECCHhhccCCCCc
Confidence            6665  5599999998743  3477889999999999999999999999999998877777 9999998887776643

>PRK12746 short chain dehydrogenase; Provisional

Probab=99.86  E-value=1.5e-20  Score=148.42  Aligned_cols=147  Identities=24%  Similarity=0.384  Sum_probs=116.9

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEE-EcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      +++++++||||++|||+++|++|+++|++|+++ .|+.++.++..+++...  +.++..+.+|++|..  ++.++++.+.
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~i~~~~~~~~~~   81 (254)
T PRK12746          4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESN--GGKAFLIEADLNSIDGVKKLVEQLKNE   81 (254)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence            458999999999999999999999999999775 68877777766666442  456788899999752  4445566665


Q ss_pred             hc----CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          128 IE----GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~----~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++    ..++|++|||||....  .++.+.+.+++++++++|+.|++.+++.+.|.|.+  .++ +|++||..+..+.|+
T Consensus        82 ~~~~~~~~~id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~-~v~~sS~~~~~~~~~  156 (254)
T PRK12746         82 LQIRVGTSEIDILVNNAGIGTQ--GTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRA--EGR-VINISSAEVRLGFTG  156 (254)
T ss_pred             hccccCCCCccEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhc--CCE-EEEECCHHhcCCCCC
Confidence            52    1257799999998654  34778899999999999999999999999998853  356 999999988877664


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      +
T Consensus       157 ~  157 (254)
T PRK12746        157 S  157 (254)
T ss_pred             C
Confidence            4

>PRK05693 short chain dehydrogenase; Provisional

Probab=99.86  E-value=1e-20  Score=151.27  Aligned_cols=136  Identities=25%  Similarity=0.388  Sum_probs=109.8

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhcCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIEGL  131 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~  131 (206)
                      |+++||||++|||++++++|+++|++|++++|+.++.++..    .  .  .+..+.+|+++.  .++.++.+.+.+++ 
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~----~--~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~-   72 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALA----A--A--GFTAVQLDVNDGAALARLAEELEAEHGG-   72 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----H--C--CCeEEEeeCCCHHHHHHHHHHHHHhcCC-
Confidence            68999999999999999999999999999999987655432    1  1  246788999975  24444555555554 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                       +|++|||||....  .++.+.+.+++++.+++|+.|++.++++++|.|.+ +.|+ ||++||..+..+.|.
T Consensus        73 -id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~~g~-iv~isS~~~~~~~~~  139 (274)
T PRK05693         73 -LDVLINNAGYGAM--GPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRR-SRGL-VVNIGSVSGVLVTPF  139 (274)
T ss_pred             -CCEEEECCCCCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh-cCCE-EEEECCccccCCCCC
Confidence             6699999998654  34778899999999999999999999999998864 3466 999999998877664

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=99.86  E-value=2.2e-20  Score=146.95  Aligned_cols=145  Identities=27%  Similarity=0.361  Sum_probs=120.9

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +.+|+++||||++++|++++++|+++|++|++++|+.++.++..+++...  +..+..+.+|+++.  .++.++.+.+.+
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA--GGKARARQVDVRDRAALKAAVAAGVEDF   81 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999999999999999988877777777653  34578889999875  255556666666


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc-cccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM-CSVR  202 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~-~~~~  202 (206)
                      +.  +|++|||+|....  .++.+.+.+++++.+++|+.+++.+.+.++|.|.+++.++ +|++||..+. .+.+
T Consensus        82 ~~--~d~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-ii~~ss~~~~~~~~~  151 (251)
T PRK12826         82 GR--LDILVANAGIFPL--TPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGR-IVLTSSVAGPRVGYP  151 (251)
T ss_pred             CC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcE-EEEEechHhhccCCC
Confidence            64  5599999998765  3477889999999999999999999999999998877676 9999998887 4544

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=99.86  E-value=1.8e-20  Score=147.02  Aligned_cols=144  Identities=24%  Similarity=0.323  Sum_probs=114.6

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh-hHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhcC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD-KLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIEG  130 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~  130 (206)
                      |+++||||++|||+++|++|+++|++|++++|+.+ ..++..+....  .+.++..+.+|+++.  +++.++.+.+.+++
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~   80 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGF--TEDQVRLKELDVTDTEECAEALAEIEEEEGP   80 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhc--cCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999854 22222222222  245688899999975  24555666666665


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                        +|++|||||....  .++.+.+.+++++++++|+.+++.+++.++|.|.+++.++ ||++||..+..+.|..
T Consensus        81 --id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~iss~~~~~~~~~~  149 (245)
T PRK12824         81 --VDILVNNAGITRD--SVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGR-IINISSVNGLKGQFGQ  149 (245)
T ss_pred             --CCEEEECCCCCCC--CccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeE-EEEECChhhccCCCCC
Confidence              5699999998754  3477889999999999999999999999999998777777 9999999888766543

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=99.86  E-value=1.4e-20  Score=150.06  Aligned_cols=145  Identities=21%  Similarity=0.228  Sum_probs=108.3

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-ChhhHHHHHHHHHHhcCCceEEEEEEecCCCc------hHHHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL------DEGVERIKE  126 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~~~~  126 (206)
                      ++++||||++|||++++++|+++|++|++++| +.++++++.+++.... +.+...+.+|++|..      ++.++.+.+
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~   80 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARR-PNSAVTCQADLSNSATLFSRCEAIIDACFR   80 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhcc-CCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence            68999999999999999999999999999875 4567777777765432 345667899999863      223344444


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCH-----------HHHHHHHhhhhhHHHHHHHHHhhhhHhCC-----CCceEE
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQ-----------VLLKNLIKVNVEGTTKVTQAVLPGMLKRK-----KGLSML  190 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~-----------~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-----~g~~iv  190 (206)
                      .+++  +|++|||||...+.  ++.+.+.           +++++++++|+.+++.+++++.|.|+.++     .+.+|+
T Consensus        81 ~~g~--iD~lv~nAG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv  156 (267)
T TIGR02685        81 AFGR--CDVLVNNASAFYPT--PLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIV  156 (267)
T ss_pred             ccCC--ceEEEECCccCCCC--cccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEE
Confidence            5554  66999999986542  2333333           35899999999999999999999986442     223499


Q ss_pred             EeccccccccccC
Q 028656          191 NIGKAELMCSVRF  203 (206)
Q Consensus       191 ~isS~~~~~~~~~  203 (206)
                      +++|..+..+.|.
T Consensus       157 ~~~s~~~~~~~~~  169 (267)
T TIGR02685       157 NLCDAMTDQPLLG  169 (267)
T ss_pred             EehhhhccCCCcc
Confidence            9999988877664

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.86  E-value=2.5e-20  Score=146.96  Aligned_cols=145  Identities=20%  Similarity=0.290  Sum_probs=112.8

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-ChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~  126 (206)
                      .+++|+++||||++|||+++++.|+++|++|++..+ +.++.++..+++     +.++..+.+|+++..  ++.++.+.+
T Consensus         2 ~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~   76 (253)
T PRK08642          2 QISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADEL-----GDRAIALQADVTDREQVQAMFATATE   76 (253)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            356899999999999999999999999999988765 444444443332     246788899998752  455566666


Q ss_pred             HhcCCCccEEEEeccccCC----cccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          127 AIEGLDVGVLINNVGISYP----YARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~----~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      .++. .+|++|||||....    ...++.+.+.+++++.+++|+.+++.++++++|.|.+++.++ ||++||..+..+.
T Consensus        77 ~~g~-~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~-iv~iss~~~~~~~  153 (253)
T PRK08642         77 HFGK-PITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGR-IINIGTNLFQNPV  153 (253)
T ss_pred             HhCC-CCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeE-EEEECCccccCCC
Confidence            6664 36699999987431    123477889999999999999999999999999998777677 9999997765543

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=99.86  E-value=2.3e-20  Score=147.14  Aligned_cols=138  Identities=19%  Similarity=0.301  Sum_probs=114.5

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++++|+++||||++|||++++++|+++|++|++++|+.         +..  .+.++..+.+|+++.  .++.++++.+
T Consensus         4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---------~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~   72 (252)
T PRK08220          4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---------LTQ--EDYPFATFVLDVSDAAAVAQVCQRLLA   72 (252)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch---------hhh--cCCceEEEEecCCCHHHHHHHHHHHHH
Confidence            456799999999999999999999999999999999986         111  245678899999975  2455566666


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      .+++  +|++|||||....  .++.+.+.+++++.+++|+.+++.+++++.|.|++++.++ ||++||..+..+.+
T Consensus        73 ~~~~--id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~-iv~~ss~~~~~~~~  143 (252)
T PRK08220         73 ETGP--LDVLVNAAGILRM--GATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGA-IVTVGSNAAHVPRI  143 (252)
T ss_pred             HcCC--CCEEEECCCcCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCE-EEEECCchhccCCC
Confidence            6665  5599999998754  3477889999999999999999999999999998877777 99999988877655

>PRK06181 short chain dehydrogenase; Provisional

Probab=99.86  E-value=2.9e-20  Score=147.68  Aligned_cols=143  Identities=27%  Similarity=0.457  Sum_probs=117.1

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~  130 (206)
                      +++++||||++|||++++++|+++|++|++++|+.++.++..+++...  +.++....+|+++..  ++.++.+.+.+++
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   78 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH--GGEALVVPTDVSDAEACERLIEAAVARFGG   78 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999999999999988887777777653  446788899999852  4445555555554


Q ss_pred             CCccEEEEeccccCCcccccccC-CHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          131 LDVGVLINNVGISYPYARFFHEV-DQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                        +|++|||||.....  ++.+. +.|++++.+++|+.+++.+++.+.|.|.++ .++ +|++||..+..+.+.
T Consensus        79 --id~vi~~ag~~~~~--~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~-iv~~sS~~~~~~~~~  146 (263)
T PRK06181         79 --IDILVNNAGITMWS--RFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKAS-RGQ-IVVVSSLAGLTGVPT  146 (263)
T ss_pred             --CCEEEECCCccccc--chhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCE-EEEEecccccCCCCC
Confidence              56999999987653  36677 889999999999999999999999988654 466 999999988877664

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=99.86  E-value=2.7e-20  Score=145.78  Aligned_cols=142  Identities=20%  Similarity=0.265  Sum_probs=113.0

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcC-hhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcCCC
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEGLD  132 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~  132 (206)
                      ++||||++|||+++|++|+++|++|++++|+ .++.++..+++++.  +.++..+.+|+++..  ++.++++.+.+++  
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~--   76 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQ--GGNARLLQFDVADRVACRTLLEADIAEHGA--   76 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc--CCeEEEEEccCCCHHHHHHHHHHHHHHcCC--
Confidence            5899999999999999999999999998865 45566666666653  456888999999752  4455555666665  


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHh-hhhHhCCCCceEEEeccccccccccCC
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVL-PGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~-~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +|++|||||+....  ++.+.+.+++++++++|+.|++.++++++ |.+.+++.++ ||++||.++..+.|.+
T Consensus        77 i~~li~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~-iv~vsS~~~~~~~~~~  146 (239)
T TIGR01831        77 YYGVVLNAGITRDA--AFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGR-IITLASVSGVMGNRGQ  146 (239)
T ss_pred             CCEEEECCCCCCCC--chhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeE-EEEEcchhhccCCCCC
Confidence            55999999987653  47788999999999999999999999886 4444455566 9999999998887754

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.85  E-value=1.4e-20  Score=147.10  Aligned_cols=134  Identities=23%  Similarity=0.310  Sum_probs=111.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+....           ...++..+.+|+++.    ++++.+.+++
T Consensus         3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~-----------~~~~~~~~~~D~~~~----~~~~~~~~~~   67 (235)
T PRK06550          3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD-----------LSGNFHFLQLDLSDD----LEPLFDWVPS   67 (235)
T ss_pred             CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc-----------cCCcEEEEECChHHH----HHHHHHhhCC
Confidence            5689999999999999999999999999999999985431           123567888898865    5666666675


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                        +|++|||||+.... .++.+.+.+++++++++|+.|++.++++++|.|++++.++ ||++||..+..+.|.
T Consensus        68 --id~lv~~ag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~  136 (235)
T PRK06550         68 --VDILCNTAGILDDY-KPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGI-IINMCSIASFVAGGG  136 (235)
T ss_pred             --CCEEEECCCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcE-EEEEcChhhccCCCC
Confidence              55999999976432 3467889999999999999999999999999998877777 999999998877664

>PRK07326 short chain dehydrogenase; Provisional

Probab=99.85  E-value=3.5e-20  Score=144.85  Aligned_cols=143  Identities=24%  Similarity=0.379  Sum_probs=116.4

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      ..+++++||||+|++|++++++|+++|++|++++|+++++++..+++...   .++..+.+|+++..  ++.++.+.+.+
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF   80 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999999999999999998888777776542   56788999998752  34445555555


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      ++  +|++|||+|....  .++.+.+.+++++++++|+.+++.+++++++.| +++.++ ||++||..+..+.+
T Consensus        81 ~~--~d~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~~~-iv~~ss~~~~~~~~  148 (237)
T PRK07326         81 GG--LDVLIANAGVGHF--APVEELTPEEWRLVIDTNLTGAFYTIKAAVPAL-KRGGGY-IINISSLAGTNFFA  148 (237)
T ss_pred             CC--CCEEEECCCCCCC--CchhhCCHHHHHHHHhhccHHHHHHHHHHHHHH-HHCCeE-EEEECChhhccCCC
Confidence            54  5599999997654  347788999999999999999999999999988 444566 99999988766554

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=99.85  E-value=4.6e-20  Score=145.54  Aligned_cols=144  Identities=24%  Similarity=0.332  Sum_probs=119.1

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~  130 (206)
                      +|+++||||++++|++++++|+++|++|++++|+.+..+++.+++...  +.++..+.+|+++..  ++.++.+.+.+++
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA--GGSVIYLVADVTKEDEIADMIAAAAAEFGG   78 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            478999999999999999999999999999999988887777776542  456888999999852  4445566666665


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                        +|++|||||.....  +..+.+.+++++++++|+.|++.+++.++|.|.+.+.++ +|++||..+..+.|.
T Consensus        79 --~d~vi~~a~~~~~~--~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~-~v~~ss~~~~~~~~~  146 (255)
T TIGR01963        79 --LDILVNNAGIQHVA--PIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGR-IINIASAHGLVASPF  146 (255)
T ss_pred             --CCEEEECCCCCCCC--CcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeE-EEEEcchhhcCCCCC
Confidence              56999999987543  356778899999999999999999999999998777777 999999887777664

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.85  E-value=7.3e-20  Score=144.16  Aligned_cols=143  Identities=21%  Similarity=0.303  Sum_probs=113.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +++++++||||++|||+++++.++++|++|++++|+.+++++..+++...  +.++..+.+|+++.  .++.++.+.+.+
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL--GTEVRGYAANVTDEEDVEATFAQIAEDF   80 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            56899999999999999999999999999999999998888877777653  45678899999875  234445555555


Q ss_pred             cCCCccEEEEeccccCCcc------ccc-ccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccc
Q 028656          129 EGLDVGVLINNVGISYPYA------RFF-HEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAEL  197 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~------~~~-~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~  197 (206)
                      ++  +|++|||||......      .++ .+.+.+++++++++|+.|++.+.+.++|.|.+++.++.||++||...
T Consensus        81 ~~--id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~  154 (253)
T PRK08217         81 GQ--LNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIAR  154 (253)
T ss_pred             CC--CCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccc
Confidence            54  569999999754321      112 56788999999999999999999999999987644334999998654

>PRK12744 short chain dehydrogenase; Provisional

Probab=99.85  E-value=5.2e-20  Score=145.86  Aligned_cols=140  Identities=16%  Similarity=0.194  Sum_probs=106.9

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh----hhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP----DKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVE  122 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~  122 (206)
                      .++++|+++||||++|||+++|++|+++|++|++++++.    +..++..++++..  +.++..+.+|+++..  ++.++
T Consensus         4 ~~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~   81 (257)
T PRK12744          4 HSLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAA--GAKAVAFQADLTTAAAVEKLFD   81 (257)
T ss_pred             CCCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHh--CCcEEEEecCcCCHHHHHHHHH
Confidence            346789999999999999999999999999977776543    3444555555442  456788899999752  45556


Q ss_pred             HHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEe-ccccc
Q 028656          123 RIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNI-GKAEL  197 (206)
Q Consensus       123 ~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~i-sS~~~  197 (206)
                      ++.+.+++  +|++|||||....  .++.+.+.+++++++++|+.|++.+++++.|.|.+  .++ ++++ ||..+
T Consensus        82 ~~~~~~~~--id~li~~ag~~~~--~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~--~~~-iv~~~ss~~~  150 (257)
T PRK12744         82 DAKAAFGR--PDIAINTVGKVLK--KPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLND--NGK-IVTLVTSLLG  150 (257)
T ss_pred             HHHHhhCC--CCEEEECCcccCC--CCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhcc--CCC-EEEEecchhc
Confidence            66666664  5699999998654  34778899999999999999999999999998853  356 7766 45433

>PRK12827 short chain dehydrogenase; Provisional

Probab=99.85  E-value=6.7e-20  Score=144.05  Aligned_cols=146  Identities=25%  Similarity=0.356  Sum_probs=114.0

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC----hhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN----PDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERI  124 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~  124 (206)
                      +++++++||||++|||+++|++|+++|++|++++|.    .+..++..+++...  +.++.++.+|+++..  ++.++.+
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~   81 (249)
T PRK12827          4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDAG   81 (249)
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHH
Confidence            457899999999999999999999999999997664    34445555555442  456788899999752  4445555


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHh-hhhHhCCCCceEEEeccccccccccC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVL-PGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~-~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+.+++  +|.+|||||....  .++.+.+.+++++.+++|+.+++.+++++. |.+.+++.++ +|++||..+..+.+.
T Consensus        82 ~~~~~~--~d~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~  156 (249)
T PRK12827         82 VEEFGR--LDILVNNAGIATD--AAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGR-IVNIASVAGVRGNRG  156 (249)
T ss_pred             HHHhCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeE-EEEECCchhcCCCCC
Confidence            555564  5699999998765  347788999999999999999999999999 5555555566 999999988876654

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.85  E-value=8e-20  Score=143.15  Aligned_cols=145  Identities=28%  Similarity=0.445  Sum_probs=119.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      +.+++++||||++++|++++++|+++|++|++++|++++.++..++++..  +.++.++.+|+++..  ++.++.+.+.+
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAA--GGEARVLVFDVSDEAAVRALIEAAVEAF   80 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45789999999999999999999999999999999998887777776653  556888889999752  44455555556


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      ++  +|.+||+||....  .+..+.+.+++++.++.|+.++..+++++.|+|.+.+.++ ||++||..+..+.+
T Consensus        81 ~~--id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~-ii~~ss~~~~~~~~  149 (246)
T PRK05653         81 GA--LDILVNNAGITRD--ALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGR-IVNISSVSGVTGNP  149 (246)
T ss_pred             CC--CCEEEECCCcCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcE-EEEECcHHhccCCC
Confidence            64  5699999998655  3467788999999999999999999999999987777677 99999987766544

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=99.85  E-value=6.2e-20  Score=144.72  Aligned_cols=144  Identities=29%  Similarity=0.401  Sum_probs=114.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh--HHHHHHHHHHhcCC-ceEEEEEEecCC-Cc--hHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK--LKDVSDSIQAKYAK-TQIKSVVVDFSG-DL--DEGVER  123 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~-~~~~~~~~d~~~-~~--~~~~~~  123 (206)
                      ..++|+++||||++|||+++|++|+++|++|+++.|+.+.  .+...+...  ..+ .......+|+++ ..  +..++.
T Consensus         2 ~~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dvs~~~~~v~~~~~~   79 (251)
T COG1028           2 DLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK--EAGGGRAAAVAADVSDDEESVEALVAA   79 (251)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH--hcCCCcEEEEEecCCCCHHHHHHHHHH
Confidence            3568999999999999999999999999999998888664  344443333  122 367888899997 42  455677


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +.+.++++|  ++|||||+.... .++.+.+.+++++++++|+.|++.+++.+.|.++++   + ||++||..+. +.++
T Consensus        80 ~~~~~g~id--~lvnnAg~~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~---~-Iv~isS~~~~-~~~~  151 (251)
T COG1028          80 AEEEFGRID--ILVNNAGIAGPD-APLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQ---R-IVNISSVAGL-GGPP  151 (251)
T ss_pred             HHHHcCCCC--EEEECCCCCCCC-CChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhC---e-EEEECCchhc-CCCC
Confidence            777777655  999999998642 247899999999999999999999999888877733   5 9999999998 6654

>PRK06924 short chain dehydrogenase; Provisional

Probab=99.85  E-value=2.8e-20  Score=146.67  Aligned_cols=143  Identities=17%  Similarity=0.272  Sum_probs=111.0

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh-hhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-DKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEG  130 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~  130 (206)
                      |+++||||++|||++++++|+++|++|++++|+. +.+++..+.     .+.++..+.+|+++..  ++.++++.+.++.
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQ-----YNSNLTFHSLDLQDVHELETNFNEILSSIQE   76 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhc-----cCCceEEEEecCCCHHHHHHHHHHHHHhcCc
Confidence            6899999999999999999999999999999987 344333221     1346778899999752  4444555555543


Q ss_pred             C--CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccC
Q 028656          131 L--DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       131 ~--~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~  203 (206)
                      .  +.+++|||||...+. .++.+.+.+++++.+++|+.+++.+++.++|.|++.+ .++ ||++||..+..+.|.
T Consensus        77 ~~~~~~~~v~~ag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~  150 (251)
T PRK06924         77 DNVSSIHLINNAGMVAPI-KPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKR-VINISSGAAKNPYFG  150 (251)
T ss_pred             ccCCceEEEEcceecccC-cccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCce-EEEecchhhcCCCCC
Confidence            2  333899999986542 3477889999999999999999999999999998754 355 999999888777664

>PRK12828 short chain dehydrogenase; Provisional

Probab=99.85  E-value=4.3e-20  Score=144.21  Aligned_cols=145  Identities=21%  Similarity=0.280  Sum_probs=118.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      ++++|+++||||+++||++++++|+++|++|++++|+.++..+..+++...    ......+|+.|..  ++.++.+.+.
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~   79 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPAD----ALRIGGIDLVDPQAARRAVDEVNRQ   79 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhc----CceEEEeecCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999988777666655432    2455678888752  4555666666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +++  +|++||++|.....  ++.+.+.+++++.+++|+.+++.+++++.|.+.+++.++ +|++||..+..+.|.
T Consensus        80 ~~~--~d~vi~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~  150 (239)
T PRK12828         80 FGR--LDALVNIAGAFVWG--TIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGR-IVNIGAGAALKAGPG  150 (239)
T ss_pred             hCC--cCEEEECCcccCcC--ChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCE-EEEECchHhccCCCC
Confidence            765  55999999976542  366778999999999999999999999999998777777 999999988776653

>PRK08264 short chain dehydrogenase; Validated

Probab=99.85  E-value=5.7e-20  Score=143.82  Aligned_cols=139  Identities=24%  Similarity=0.354  Sum_probs=115.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      ++.+++++||||++++|+++|++|+++|+ +|++++|+.++.++         .+..+.++.+|+++.  +.++++.+.+
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---------~~~~~~~~~~D~~~~--~~~~~~~~~~   71 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---------LGPRVVPLQLDVTDP--ASVAAAAEAA   71 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---------cCCceEEEEecCCCH--HHHHHHHHhc
Confidence            35689999999999999999999999999 99999999866543         134678889999986  5556666666


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++  +|++|||||.... ..++.+.+.+++++.+++|+.+++.+++++.|.+++++.++ +|++||..+..+.++
T Consensus        72 ~~--id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-~v~~sS~~~~~~~~~  142 (238)
T PRK08264         72 SD--VTILVNNAGIFRT-GSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGA-IVNVLSVLSWVNFPN  142 (238)
T ss_pred             CC--CCEEEECCCcCCC-CCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCE-EEEEcChhhccCCCC
Confidence            54  5699999998432 23477889999999999999999999999999988777777 999999888776664

>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]

Probab=99.85  E-value=2.9e-20  Score=140.16  Aligned_cols=145  Identities=23%  Similarity=0.380  Sum_probs=110.8

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHC-CCcEEE-EEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKT-GLNLVL-VGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~-g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      -|.++||||++|||+.++|+|.+. |-++++ ..|++++..+..+....  .+.+++.+++|++++  .+++++++.+..
T Consensus         3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~--~d~rvHii~Ldvt~deS~~~~~~~V~~iV   80 (249)
T KOG1611|consen    3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSK--SDSRVHIIQLDVTCDESIDNFVQEVEKIV   80 (249)
T ss_pred             CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhc--cCCceEEEEEecccHHHHHHHHHHHHhhc
Confidence            356999999999999999999964 666555 55667775222222222  478999999999964  366667777776


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCC----------ceEEEecccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKG----------LSMLNIGKAELM  198 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g----------~~iv~isS~~~~  198 (206)
                      +...+++++||||+..+.. ...+.+.+.|.+++++|..|++.++|+++|++++....          ..|||+||..+.
T Consensus        81 g~~GlnlLinNaGi~~~y~-~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s  159 (249)
T KOG1611|consen   81 GSDGLNLLINNAGIALSYN-TVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGS  159 (249)
T ss_pred             ccCCceEEEeccceeeecc-cccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccc
Confidence            6656889999999988754 35677888999999999999999999999988765422          149999997765


Q ss_pred             cc
Q 028656          199 CS  200 (206)
Q Consensus       199 ~~  200 (206)
                      .+
T Consensus       160 ~~  161 (249)
T KOG1611|consen  160 IG  161 (249)
T ss_pred             cC
Confidence            43

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=99.85  E-value=8.7e-20  Score=143.32  Aligned_cols=144  Identities=22%  Similarity=0.278  Sum_probs=115.3

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEE-EEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEG  130 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~  130 (206)
                      |+++||||++|||++++++|+++|++|++ ..|+.++.++...++...  +..+..+.+|++|..  ++.++.+.+.+++
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~   79 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQA--GGKAFVLQADISDENQVVAMFTAIDQHDEP   79 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhC--CCeEEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            58999999999999999999999999987 467777777777766553  456788899999862  4455555555564


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC---CCceEEEeccccccccccC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK---KGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---~g~~iv~isS~~~~~~~~~  203 (206)
                        +|++|||||..... .++.+.+.+++++++++|+.+++.+++.+++.|.++.   .++ +|++||..+..+.|.
T Consensus        80 --id~vi~~ag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~sS~~~~~~~~~  151 (247)
T PRK09730         80 --LAALVNNAGILFTQ-CTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGA-IVNVSSAASRLGAPG  151 (247)
T ss_pred             --CCEEEECCCCCCCC-CccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcE-EEEECchhhccCCCC
Confidence              55999999976432 3467889999999999999999999999999987663   345 999999988887774

>PRK07060 short chain dehydrogenase; Provisional

Probab=99.85  E-value=8.4e-20  Score=143.32  Aligned_cols=141  Identities=22%  Similarity=0.334  Sum_probs=113.4

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      +++++++++||||++|||+++++.++++|++|++++|+.++.++..+..     +  ...+.+|+++.  +.++.+.+..
T Consensus         5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-----~--~~~~~~D~~~~--~~v~~~~~~~   75 (245)
T PRK07060          5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGET-----G--CEPLRLDVGDD--AAIRAALAAA   75 (245)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----C--CeEEEecCCCH--HHHHHHHHHh
Confidence            4567999999999999999999999999999999999987766544332     2  34678899875  4455555555


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC-CceEEEeccccccccccC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK-GLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~~iv~isS~~~~~~~~~  203 (206)
                      ++  +|++|||||....  .++.+.+.+++++.+++|+.+++.+++++.+.+.+++. ++ ||++||..+..+.+.
T Consensus        76 ~~--~d~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~  146 (245)
T PRK07060         76 GA--FDGLVNCAGIASL--ESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGS-IVNVSSQAALVGLPD  146 (245)
T ss_pred             CC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcE-EEEEccHHHcCCCCC
Confidence            54  5699999998654  33667889999999999999999999999998876653 55 999999988877664

>PRK12742 oxidoreductase; Provisional

Probab=99.85  E-value=7.4e-20  Score=143.03  Aligned_cols=136  Identities=20%  Similarity=0.237  Sum_probs=104.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-ChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      +++|+++||||++|||++++++|+++|++|+++++ +.++.+++.++.     +  ...+.+|+++.  +.+.+..+.++
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~-----~--~~~~~~D~~~~--~~~~~~~~~~~   74 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET-----G--ATAVQTDSADR--DAVIDVVRKSG   74 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh-----C--CeEEecCCCCH--HHHHHHHHHhC
Confidence            56899999999999999999999999999988876 445554443322     2  34577898875  44455555555


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc-cccc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM-CSVR  202 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~-~~~~  202 (206)
                      +  +|++|||||.....  +..+.+.+++++++++|+.|++.+++.++|.|.+  .++ ||++||..+. .+.|
T Consensus        75 ~--id~li~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~g~-iv~isS~~~~~~~~~  141 (237)
T PRK12742         75 A--LDILVVNAGIAVFG--DALELDADDIDRLFKINIHAPYHASVEAARQMPE--GGR-IIIIGSVNGDRMPVA  141 (237)
T ss_pred             C--CcEEEECCCCCCCC--CcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhc--CCe-EEEEeccccccCCCC
Confidence            4  56999999987543  3667889999999999999999999999998853  366 9999998874 3444

>PRK07074 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1e-19  Score=143.98  Aligned_cols=137  Identities=26%  Similarity=0.385  Sum_probs=114.5

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~  130 (206)
                      +|+++||||++|||++++++|+++|++|++++|+.++.++..+++    .+.++..+.+|+.+..  .+.++.+.+++++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   77 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADAL----GDARFVPVACDLTDAASLAAALANAAAERGP   77 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----cCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            679999999999999999999999999999999988877766655    2446788899999753  3455666666664


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                        +|++|||+|...+.  ++.+.+.+++++.+++|+.+++.+.+++.+.+++++.++ ||++||..+.
T Consensus        78 --~d~vi~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-iv~~sS~~~~  140 (257)
T PRK07074         78 --VDVLVANAGAARAA--SLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGA-VVNIGSVNGM  140 (257)
T ss_pred             --CCEEEECCCCCCCC--ChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeE-EEEEcchhhc
Confidence              56999999987553  467788999999999999999999999999998877777 9999997654

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.84  E-value=1.8e-19  Score=141.33  Aligned_cols=147  Identities=27%  Similarity=0.366  Sum_probs=117.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh-hHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD-KLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~  126 (206)
                      .+++|+++||||++++|++++++|+++|++|+++.|+.+ ..++..+++..  .+.++..+.+|+++..  .+.++++.+
T Consensus         2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (248)
T PRK05557          2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGA--LGGKALAVQGDVSDAESVERAVDEAKA   79 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999999999988887764 35555555544  2567888899999852  344555555


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+++  +|++|||||.....  ++.+.+.+++++.+++|+.+++.+.+++.|.+.+++.++ +|++||..+..+.++
T Consensus        80 ~~~~--id~vi~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-~v~iss~~~~~~~~~  151 (248)
T PRK05557         80 EFGG--VDILVNNAGITRDN--LLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGR-IINISSVVGLMGNPG  151 (248)
T ss_pred             HcCC--CCEEEECCCcCCCC--CcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeE-EEEEcccccCcCCCC
Confidence            5564  56999999987653  366788899999999999999999999999988777677 999999887766553

>PRK05884 short chain dehydrogenase; Provisional

Probab=99.84  E-value=5.6e-20  Score=142.98  Aligned_cols=128  Identities=17%  Similarity=0.268  Sum_probs=99.8

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      +++||||++|||++++++|+++|++|++++|+.+++++..+++       ....+.+|+++.  +.++.+.+.+.+ ++|
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~--~~v~~~~~~~~~-~id   71 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL-------DVDAIVCDNTDP--ASLEEARGLFPH-HLD   71 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-------cCcEEecCCCCH--HHHHHHHHHHhh-cCc
Confidence            4899999999999999999999999999999988777665543       235678999876  445555554433 467


Q ss_pred             EEEEeccccCC----cccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccc
Q 028656          135 VLINNVGISYP----YARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE  196 (206)
Q Consensus       135 ~lvnnAg~~~~----~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~  196 (206)
                      ++|||||....    ...++.+ +.++|++++++|+.|++.++|+++|.|.+  .|+ ||++||.+
T Consensus        72 ~lv~~ag~~~~~~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~--~g~-Iv~isS~~  133 (223)
T PRK05884         72 TIVNVPAPSWDAGDPRTYSLAD-TANAWRNALDATVLSAVLTVQSVGDHLRS--GGS-IISVVPEN  133 (223)
T ss_pred             EEEECCCccccCCCCcccchhc-CHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCe-EEEEecCC
Confidence            99999986321    1112444 57899999999999999999999999853  366 99999976

>PRK06940 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.4e-19  Score=145.06  Aligned_cols=129  Identities=19%  Similarity=0.252  Sum_probs=102.8

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~  130 (206)
                      +|+++|||| +|||+++|++|+ +|++|++++|+.+++++..++++..  +.++..+.+|++|..  ++.++.+ +.++ 
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~i~~~~~~~-~~~g-   75 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREA--GFDVSTQEVDVSSRESVKALAATA-QTLG-   75 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHH-HhcC-
Confidence            689999998 699999999996 8999999999988888777777553  457788999999862  3444444 3344 


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                       ++|++|||||+..         +.+++++++++|+.|++.+++++.|.|.+  .+. +|++||.++..+
T Consensus        76 -~id~li~nAG~~~---------~~~~~~~~~~vN~~g~~~l~~~~~~~m~~--~g~-iv~isS~~~~~~  132 (275)
T PRK06940         76 -PVTGLVHTAGVSP---------SQASPEAILKVDLYGTALVLEEFGKVIAP--GGA-GVVIASQSGHRL  132 (275)
T ss_pred             -CCCEEEECCCcCC---------chhhHHHHHHHhhHHHHHHHHHHHHHHhh--CCC-EEEEEecccccC
Confidence             4669999999752         12568999999999999999999999854  366 899999888764

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.84  E-value=2.5e-19  Score=141.19  Aligned_cols=145  Identities=20%  Similarity=0.266  Sum_probs=114.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC-hhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      +++++++||||+++||++++++|+++|++|++..|+ .+...+..+.+...  +.++..+.+|+++..  ++.++.+.+.
T Consensus         4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (252)
T PRK06077          4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKEN--GGEGIGVLADVSTREGCETLAKATIDR   81 (252)
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHc--CCeeEEEEeccCCHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999887754 44455555555442  446778889999752  4555666666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||.....  ++.+.+.+++++.+++|+.+++.+++++.|.|.+  .++ ||++||..+..+.|+.
T Consensus        82 ~~~--~d~vi~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~~~-iv~~sS~~~~~~~~~~  151 (252)
T PRK06077         82 YGV--ADILVNNAGLGLFS--PFLNVDDKLIDKHISTDFKSVIYCSQELAKEMRE--GGA-IVNIASVAGIRPAYGL  151 (252)
T ss_pred             cCC--CCEEEECCCCCCCC--ChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhc--CcE-EEEEcchhccCCCCCc
Confidence            664  56999999986553  4777888899999999999999999999998854  356 9999999988776643

>PRK12367 short chain dehydrogenase; Provisional

Probab=99.84  E-value=8.1e-20  Score=144.05  Aligned_cols=135  Identities=12%  Similarity=0.124  Sum_probs=98.8

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKE  126 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  126 (206)
                      .+.++++|+++||||++|||++++++|+++|++|++++|+.....+  +.  ..  .. ...+.+|+++.     +.+.+
T Consensus         8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~--~~--~~--~~-~~~~~~D~~~~-----~~~~~   75 (245)
T PRK12367          8 AQSTWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSE--SN--DE--SP-NEWIKWECGKE-----ESLDK   75 (245)
T ss_pred             hHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhh--hh--cc--CC-CeEEEeeCCCH-----HHHHH
Confidence            3455779999999999999999999999999999999998632111  11  11  11 25678899876     23344


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC--CCCceEEEecccccccc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR--KKGLSMLNIGKAELMCS  200 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~~iv~isS~~~~~~  200 (206)
                      .+++  +|++|||||+..     ..+.+.+++++++++|+.|++.++|+++|.|+++  +.++.+++.||.++..+
T Consensus        76 ~~~~--iDilVnnAG~~~-----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~~  144 (245)
T PRK12367         76 QLAS--LDVLILNHGINP-----GGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQP  144 (245)
T ss_pred             hcCC--CCEEEECCccCC-----cCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccCC
Confidence            5664  669999999753     2356789999999999999999999999999763  22432545556555443

>PRK12829 short chain dehydrogenase; Provisional

Probab=99.84  E-value=2.1e-19  Score=142.55  Aligned_cols=147  Identities=20%  Similarity=0.288  Sum_probs=117.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      +++|+++||||+++||++++++|+++|++|++++|+.+..++..++..    +.++..+.+|+++..  ++.++++.+.+
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP----GAKVTATVADVADPAQVERVFDTAVERF   84 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh----cCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            568999999999999999999999999999999999877766555442    236788899999752  44556666666


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||...+. .++.+.+.+++++++++|+.+++.+++.+.+.+.+.+.++.++++||..+..+.|..
T Consensus        85 ~~--~d~vi~~ag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~~~~  157 (264)
T PRK12829         85 GG--LDVLVNNAGIAGPT-GGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGYPGR  157 (264)
T ss_pred             CC--CCEEEECCCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCCCCC
Confidence            64  56999999987332 346678889999999999999999999999988777662339999998887776643

>PRK08324 short chain dehydrogenase; Validated

Probab=99.84  E-value=1.2e-19  Score=161.73  Aligned_cols=146  Identities=23%  Similarity=0.282  Sum_probs=122.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      +.||+++||||+||||++++++|+++|++|++++|+.+++++..+++...   ..+..+.+|+++..  ++.++.+.+.+
T Consensus       420 l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~  496 (681)
T PRK08324        420 LAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF  496 (681)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999998888777766442   46788999999752  44556666666


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC-CceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK-GLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||....  .++.+.+.++|++.+++|+.|++.+++++.|.|++++. |+ ||++||..+..+.|+.
T Consensus       497 g~--iDvvI~~AG~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~-iV~vsS~~~~~~~~~~  568 (681)
T PRK08324        497 GG--VDIVVSNAGIAIS--GPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGS-IVFIASKNAVNPGPNF  568 (681)
T ss_pred             CC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcE-EEEECCccccCCCCCc
Confidence            65  5599999998765  34788899999999999999999999999999988765 55 9999999888877643

>PRK07023 short chain dehydrogenase; Provisional

Probab=99.83  E-value=1.3e-19  Score=142.43  Aligned_cols=142  Identities=22%  Similarity=0.256  Sum_probs=110.9

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHH-HHHHhcC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVER-IKEAIEG  130 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~-~~~~~~~  130 (206)
                      ++++||||++|||++++++|+++|++|++++|+.++.  .   ...  .+.++..+.+|+++..  ++.+++ +.+.++.
T Consensus         2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~--~---~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   74 (243)
T PRK07023          2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS--L---AAA--AGERLAEVELDLSDAAAAAAWLAGDLLAAFVD   74 (243)
T ss_pred             ceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh--h---hhc--cCCeEEEEEeccCCHHHHHHHHHHHHHHHhcc
Confidence            3699999999999999999999999999999986531  1   111  2456888999999862  232333 4444443


Q ss_pred             -CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          131 -LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 -~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                       .++|++|||||...+. .++.+.+.+++++.+++|+.|++.+++.+.|.|.+++.++ ||++||..+..+.++.
T Consensus        75 ~~~~~~~v~~ag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~isS~~~~~~~~~~  147 (243)
T PRK07023         75 GASRVLLINNAGTVEPI-GPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERR-ILHISSGAARNAYAGW  147 (243)
T ss_pred             CCCceEEEEcCcccCCC-CccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCE-EEEEeChhhcCCCCCc
Confidence             2578999999986542 3467789999999999999999999999999998776677 9999999888776643

>PRK08177 short chain dehydrogenase; Provisional

Probab=99.83  E-value=1.6e-19  Score=140.47  Aligned_cols=136  Identities=15%  Similarity=0.263  Sum_probs=108.4

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      |+++||||++|||++++++|+++|++|++++|+.++.+++.+ .      ..+....+|++|.  +.++.+.+.+.+..+
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~-~------~~~~~~~~D~~d~--~~~~~~~~~~~~~~i   72 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQA-L------PGVHIEKLDMNDP--ASLDQLLQRLQGQRF   72 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHh-c------cccceEEcCCCCH--HHHHHHHHHhhcCCC
Confidence            689999999999999999999999999999999877554322 1      2355677898876  555556665544467


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      |++|||||+..+...++.+.+.+++++.+++|+.+++.++++++|.+.+ +.+. ++++||..+..+
T Consensus        73 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~-iv~~ss~~g~~~  137 (225)
T PRK08177         73 DLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRP-GQGV-LAFMSSQLGSVE  137 (225)
T ss_pred             CEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhh-cCCE-EEEEccCccccc
Confidence            7999999997554445778899999999999999999999999998754 3455 999999877654

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=99.83  E-value=1.4e-19  Score=142.24  Aligned_cols=137  Identities=27%  Similarity=0.419  Sum_probs=114.8

Q ss_pred             CCC--ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh-cCCCcc
Q 028656           60 GPT--DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI-EGLDVG  134 (206)
Q Consensus        60 Gas--~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~-~~~~id  134 (206)
                      |++  +|||+++|++|+++|++|++++|+.+++++..+++.+..+ .+  .+.+|++++  +++.++++.+.+ ++  +|
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~-~~--~~~~D~~~~~~v~~~~~~~~~~~~g~--iD   75 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYG-AE--VIQCDLSDEESVEALFDEAVERFGGR--ID   75 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTT-SE--EEESCTTSHHHHHHHHHHHHHHHCSS--ES
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcC-Cc--eEeecCcchHHHHHHHHHHHhhcCCC--eE
Confidence            566  9999999999999999999999999988777777776644 33  499999974  367778888888 65  55


Q ss_pred             EEEEeccccCC--cccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          135 VLINNVGISYP--YARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       135 ~lvnnAg~~~~--~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++|||+|....  ...++.+.+.++|++.+++|+.+++.++|++.|.|.+.  |. ||++||..+..+.|.+
T Consensus        76 ~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gs-ii~iss~~~~~~~~~~  144 (241)
T PF13561_consen   76 ILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKG--GS-IINISSIAAQRPMPGY  144 (241)
T ss_dssp             EEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHE--EE-EEEEEEGGGTSBSTTT
T ss_pred             EEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CC-cccccchhhcccCccc
Confidence            99999998765  23568899999999999999999999999999977554  55 9999999988887743

...

>PRK06720 hypothetical protein; Provisional

Probab=99.82  E-value=7.3e-19  Score=130.91  Aligned_cols=142  Identities=18%  Similarity=0.220  Sum_probs=111.0

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      ++++++|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++.+.  +.+...+.+|+++.  .++.++++.
T Consensus        11 ~~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~v~~~~   88 (169)
T PRK06720         11 KMKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNL--GGEALFVSYDMEKQGDWQRVISITL   88 (169)
T ss_pred             ccccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            35578999999999999999999999999999999999988887777777643  34566789999874  255666677


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-------CCceEEEecccccc
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-------KGLSMLNIGKAELM  198 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-------~g~~iv~isS~~~~  198 (206)
                      +.+++  +|++|||||+.... .++.+.++++ ++  .+|+.+++..++.+.+.|++++       .|+ +..|||.++.
T Consensus        89 ~~~G~--iDilVnnAG~~~~~-~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  161 (169)
T PRK06720         89 NAFSR--IDMLFQNAGLYKID-SIFSRQQEND-SN--VLCINDVWIEIKQLTSSFMKQQEEVVLSDLPI-FGIIGTKGQS  161 (169)
T ss_pred             HHcCC--CCEEEECCCcCCCC-CcccccchhH-hh--ceeccHHHHHHHHHHHHHHhcCCEEEeecCce-eeEecccccc
Confidence            77775  55999999987643 3466656555 43  7788888999999999987664       466 8888886654

>PRK06953 short chain dehydrogenase; Provisional

Probab=99.82  E-value=6.7e-19  Score=136.63  Aligned_cols=135  Identities=16%  Similarity=0.273  Sum_probs=106.5

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      |+++||||+++||++++++|+++|++|++++|+.++.+++.    ..  +  +..+.+|+++.  +.++.+.+...+.++
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~----~~--~--~~~~~~D~~~~--~~v~~~~~~~~~~~~   71 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQ----AL--G--AEALALDVADP--ASVAGLAWKLDGEAL   71 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHH----hc--c--ceEEEecCCCH--HHHHHHHHHhcCCCC
Confidence            57999999999999999999999999999999987655432    21  2  35689999986  445555444443357


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      |++|||+|.......++.+.+.+++++.+++|+.+++.+++++.|.|.+ +.+. ++++||..+..+
T Consensus        72 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~g~-iv~isS~~~~~~  136 (222)
T PRK06953         72 DAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEA-AGGV-LAVLSSRMGSIG  136 (222)
T ss_pred             CEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhc-cCCe-EEEEcCcccccc
Confidence            8999999987433334667789999999999999999999999998754 3566 999999877655

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.82  E-value=1.2e-18  Score=136.53  Aligned_cols=146  Identities=25%  Similarity=0.403  Sum_probs=115.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh-hHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD-KLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      .++|+++||||+++||++++++|+++|++|++..|+.+ ..+...+.+...  +.++.++.+|+++..  ++.++.+.+.
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEAL--GRRAQAVQADVTDKAALEAAVAAAVER   81 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCcCCHHHHHHHHHHHHHH
Confidence            34689999999999999999999999999888776654 444555555443  456788899998752  3444555555


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +++  +|++|||||....  .++.+.+.+++++.+++|+.+++.+.+.++|.+.+.+.++ +|++||..+..+.+.
T Consensus        82 ~~~--id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-~i~~SS~~~~~~~~~  152 (249)
T PRK12825         82 FGR--IDILVNNAGIFED--KPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGR-IVNISSVAGLPGWPG  152 (249)
T ss_pred             cCC--CCEEEECCccCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCE-EEEECccccCCCCCC
Confidence            554  5699999997654  3467888999999999999999999999999998877777 999999988776653

>PRK08017 oxidoreductase; Provisional

Probab=99.82  E-value=7.6e-19  Score=138.83  Aligned_cols=138  Identities=20%  Similarity=0.320  Sum_probs=110.1

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEGL  131 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~  131 (206)
                      |+++||||+||||++++++|+++|++|++++|+.++++...    ..    .+..+.+|+++..  ++.++.+.+..++ 
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~----~~----~~~~~~~D~~~~~~~~~~~~~i~~~~~~-   73 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN----SL----GFTGILLDLDDPESVERAADEVIALTDN-   73 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH----hC----CCeEEEeecCCHHHHHHHHHHHHHhcCC-
Confidence            68999999999999999999999999999999987765432    21    2466788988752  3334444443322 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++|.+|||+|....  .++.+.+.+++++.+++|+.|++.+++.++|.|.+.+.++ ||++||..+..+.|.
T Consensus        74 ~~~~ii~~ag~~~~--~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~-iv~~ss~~~~~~~~~  142 (256)
T PRK08017         74 RLYGLFNNAGFGVY--GPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGR-IVMTSSVMGLISTPG  142 (256)
T ss_pred             CCeEEEECCCCCCc--cchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCE-EEEEcCcccccCCCC
Confidence            46799999997654  3477889999999999999999999999999998887777 999999888777653

>PRK07041 short chain dehydrogenase; Provisional

Probab=99.82  E-value=5.6e-19  Score=137.52  Aligned_cols=133  Identities=13%  Similarity=0.203  Sum_probs=108.2

Q ss_pred             EEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCccEE
Q 028656           57 LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVL  136 (206)
Q Consensus        57 lItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id~l  136 (206)
                      +||||++|||++++++|+++|++|++++|+.++.++..++++.   +.++.++.+|+++.  +.+.++.+.+++  +|++
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~--~~~~~~~~~~~~--id~l   73 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG---GAPVRTAALDITDE--AAVDAFFAEAGP--FDHV   73 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCceEEEEccCCCH--HHHHHHHHhcCC--CCEE
Confidence            5999999999999999999999999999998877776666542   45677889999987  555666666664  5699


Q ss_pred             EEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          137 INNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       137 vnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      |||||....  .++.+.+.+++++++++|+.+++.+.+  .+.+  ++.++ ||++||..+..+.|.
T Consensus        74 i~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~--~~~~--~~~g~-iv~~ss~~~~~~~~~  133 (230)
T PRK07041         74 VITAADTPG--GPVRALPLAAAQAAMDSKFWGAYRVAR--AARI--APGGS-LTFVSGFAAVRPSAS  133 (230)
T ss_pred             EECCCCCCC--CChhhCCHHHHHHHHHHHHHHHHHHHh--hhhh--cCCeE-EEEECchhhcCCCCc
Confidence            999998765  347788999999999999999999999  4434  34466 999999998877664

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=99.81  E-value=1.4e-18  Score=135.79  Aligned_cols=142  Identities=30%  Similarity=0.452  Sum_probs=114.1

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcCh-hhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcCCC
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-DKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEGLD  132 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~  132 (206)
                      ++|||++++||.+++++|+++|++|++++|+. +..++..+.+...  +.++....+|+++..  ++.++.+.+.++.  
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~--   76 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAY--GVKALGVVCDVSDREDVKAVVEEIEEELGP--   76 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHhCC--
Confidence            58999999999999999999999999999875 4555555555543  446788999999752  4455566666664  


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +|++|||||....  .++.+.+.+++++.+++|+.+++.+.+.+.+.+.+++.++ ++++||.++..+.|..
T Consensus        77 id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-~v~~sS~~~~~g~~~~  145 (239)
T TIGR01830        77 IDILVNNAGITRD--NLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGR-IINISSVVGLMGNAGQ  145 (239)
T ss_pred             CCEEEECCCCCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeE-EEEECCccccCCCCCC
Confidence            5699999998654  3366788899999999999999999999999987776677 9999999888776643

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK07578 short chain dehydrogenase; Provisional

Probab=99.81  E-value=6.7e-19  Score=134.43  Aligned_cols=121  Identities=15%  Similarity=0.144  Sum_probs=101.6

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      +++||||++|||++++++|+++ ++|++++|+.+                   .+++|+++.  +.++.+.+.+++  +|
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-------------------~~~~D~~~~--~~~~~~~~~~~~--id   57 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-------------------DVQVDITDP--ASIRALFEKVGK--VD   57 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-------------------ceEecCCCh--HHHHHHHHhcCC--CC
Confidence            6999999999999999999999 99999999753                   257899986  556666666664  56


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++|||||....  .++.+.+.++|++.+++|+.+++.+++++.|.|.+  .+. |+++||..+..+.|+.
T Consensus        58 ~lv~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~g~-iv~iss~~~~~~~~~~  122 (199)
T PRK07578         58 AVVSAAGKVHF--APLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLND--GGS-FTLTSGILSDEPIPGG  122 (199)
T ss_pred             EEEECCCCCCC--CchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCe-EEEEcccccCCCCCCc
Confidence            99999998654  45778899999999999999999999999999853  366 9999999988777643

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=99.81  E-value=1.1e-18  Score=145.90  Aligned_cols=127  Identities=19%  Similarity=0.256  Sum_probs=98.5

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.+++++..   ...  ...+..+.+|++|.     +.+.+.+++
T Consensus       176 l~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~---~~~--~~~v~~v~~Dvsd~-----~~v~~~l~~  245 (406)
T PRK07424        176 LKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEI---NGE--DLPVKTLHWQVGQE-----AALAELLEK  245 (406)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---hhc--CCCeEEEEeeCCCH-----HHHHHHhCC
Confidence            47899999999999999999999999999999999876654322   111  23356788999876     334445564


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC---CceEEEecc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK---GLSMLNIGK  194 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~---g~~iv~isS  194 (206)
                        +|++|||||+...     .+.+.|++++++++|+.|++.++++++|.|++++.   +..+|++|+
T Consensus       246 --IDiLInnAGi~~~-----~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ss  305 (406)
T PRK07424        246 --VDILIINHGINVH-----GERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSE  305 (406)
T ss_pred             --CCEEEECCCcCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence              5699999997542     35788999999999999999999999999987652   232566654

>PRK09135 pteridine reductase; Provisional

Probab=99.81  E-value=1.5e-18  Score=136.30  Aligned_cols=145  Identities=19%  Similarity=0.255  Sum_probs=112.5

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh-hhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-DKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      ..+++++||||+++||++++++|+++|++|++++|+. +..++..+.+.... +..+..+.+|+++..  ++.++.+.+.
T Consensus         4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~   82 (249)
T PRK09135          4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALR-PGSAAALQADLLDPDALPELVAACVAA   82 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999864 44555555554432 345778899999752  4445556666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      +++  +|++|||||...+.  ++.+.+.+++++++++|+.|++.+.+++.|.+.++ .+. +++++|..+..+.+
T Consensus        83 ~~~--~d~vi~~ag~~~~~--~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~  151 (249)
T PRK09135         83 FGR--LDALVNNASSFYPT--PLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQ-RGA-IVNITDIHAERPLK  151 (249)
T ss_pred             cCC--CCEEEECCCCCCCC--ChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhC-CeE-EEEEeChhhcCCCC
Confidence            664  56999999987653  36677888999999999999999999999987654 355 88888877665554

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.81  E-value=6e-19  Score=150.51  Aligned_cols=142  Identities=22%  Similarity=0.343  Sum_probs=111.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh--hhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP--DKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++++++||||++|||++++++|+++|++|++++|+.  +.+++..+++     +  ...+.+|+++.  .++.++.+.+
T Consensus       208 ~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~-----~--~~~~~~Dv~~~~~~~~~~~~~~~  280 (450)
T PRK08261        208 LAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRV-----G--GTALALDITAPDAPARIAEHLAE  280 (450)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHc-----C--CeEEEEeCCCHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999853  3333333222     2  24678899875  2445555555


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+...  +++.+.+.++|++++++|+.|++.+.+++.|.+..++.++ ||++||.++..+.+++
T Consensus       281 ~~g~--id~vi~~AG~~~~--~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~-iv~~SS~~~~~g~~~~  353 (450)
T PRK08261        281 RHGG--LDIVVHNAGITRD--KTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGR-IVGVSSISGIAGNRGQ  353 (450)
T ss_pred             hCCC--CCEEEECCCcCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCE-EEEECChhhcCCCCCC
Confidence            5554  5699999998765  3478899999999999999999999999999766555666 9999999988777643

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=99.81  E-value=8.3e-19  Score=137.05  Aligned_cols=130  Identities=16%  Similarity=0.202  Sum_probs=102.6

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      ++++||||++|||+++|++|+++|  ..|+...|+....      .    .+.++.++++|+++.  +.++.+.+.+++ 
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~------~----~~~~~~~~~~Dls~~--~~~~~~~~~~~~-   67 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD------F----QHDNVQWHALDVTDE--AEIKQLSEQFTQ-   67 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc------c----ccCceEEEEecCCCH--HHHHHHHHhcCC-
Confidence            479999999999999999999985  5666666654321      1    235678899999987  555667777775 


Q ss_pred             CccEEEEeccccCCc----ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          132 DVGVLINNVGISYPY----ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       132 ~id~lvnnAg~~~~~----~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                       +|++|||||+....    ..++++.+.+.+++.+++|+.+++.+++.++|.|.+++.++ ++++||..+.
T Consensus        68 -id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~-i~~iss~~~~  136 (235)
T PRK09009         68 -LDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAK-FAVISAKVGS  136 (235)
T ss_pred             -CCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCce-EEEEeecccc
Confidence             55999999997532    23477888899999999999999999999999997766666 9999986653

>PRK07577 short chain dehydrogenase; Provisional

Probab=99.81  E-value=1.1e-18  Score=136.23  Aligned_cols=127  Identities=29%  Similarity=0.445  Sum_probs=102.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~  129 (206)
                      .+|+++||||++|||++++++|+++|++|++++|+.+..      .     ..  .++.+|+++..  ++.++.+.+.. 
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~------~-----~~--~~~~~D~~~~~~~~~~~~~~~~~~-   67 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD------F-----PG--ELFACDLADIEQTAATLAQINEIH-   67 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc------c-----Cc--eEEEeeCCCHHHHHHHHHHHHHhC-
Confidence            478999999999999999999999999999999987540      0     11  35788998752  33444444432 


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAEL  197 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~  197 (206)
                        ++|++|||||....  .++.+.+.+++++.+++|+.+++.+.++++|.|++++.++ ||++||...
T Consensus        68 --~~d~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~~sS~~~  130 (234)
T PRK07577         68 --PVDAIVNNVGIALP--QPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGR-IVNICSRAI  130 (234)
T ss_pred             --CCcEEEECCCCCCC--CChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcE-EEEEccccc
Confidence              46799999998765  3477889999999999999999999999999998887777 999999854

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.79  E-value=6.8e-18  Score=132.01  Aligned_cols=137  Identities=18%  Similarity=0.236  Sum_probs=107.6

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||.++++.++++|++|++++|++++.+++.+++..   ...+..+.+|+++..  ++.++++...
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~   78 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK---YGNIHYVVGDVSSTESARNVIEKAAKV   78 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999887776666544   235778899999752  4444555555


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      +++  +|.+++|+|.....  ++.  +.+++++++++|+.+++.+.+.++|.|.+  .++ +|++||..+.
T Consensus        79 ~~~--id~ii~~ag~~~~~--~~~--~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~~~-iv~~ss~~~~  140 (238)
T PRK05786         79 LNA--IDGLVVTVGGYVED--TVE--EFSGLEEMLTNHIKIPLYAVNASLRFLKE--GSS-IVLVSSMSGI  140 (238)
T ss_pred             hCC--CCEEEEcCCCcCCC--chH--HHHHHHHHHHHhchHHHHHHHHHHHHHhc--CCE-EEEEecchhc
Confidence            554  55999999875432  233  33889999999999999999999998743  366 9999998764

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.77  E-value=5.6e-19  Score=128.20  Aligned_cols=146  Identities=26%  Similarity=0.356  Sum_probs=119.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      .+|-+.+||||.+|+|++.++.|++.|+.|++++...++.++..+++     +.++.+.+.|++++  +..+++..+.++
T Consensus         7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakel-----g~~~vf~padvtsekdv~aala~ak~kf   81 (260)
T KOG1199|consen    7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKEL-----GGKVVFTPADVTSEKDVRAALAKAKAKF   81 (260)
T ss_pred             hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHh-----CCceEEeccccCcHHHHHHHHHHHHhhc
Confidence            46889999999999999999999999999999999998888888877     66788999999975  355667888888


Q ss_pred             cCCCccEEEEeccccCCcccc----cccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC------CCCceEEEecccccc
Q 028656          129 EGLDVGVLINNVGISYPYARF----FHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR------KKGLSMLNIGKAELM  198 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~----~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~------~~g~~iv~isS~~~~  198 (206)
                      ++.|  .+|||||+......+    -...+.|++++.+++|+.|+|++.+.-.-.|-++      ++|- |||..|++++
T Consensus        82 grld--~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgv-iintasvaaf  158 (260)
T KOG1199|consen   82 GRLD--ALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGV-IINTASVAAF  158 (260)
T ss_pred             ccee--eeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceE-EEeeceeeee
Confidence            8755  999999998643211    1345789999999999999999999988877543      2455 9999999988


Q ss_pred             ccccCC
Q 028656          199 CSVRFH  204 (206)
Q Consensus       199 ~~~~~~  204 (206)
                      -+--++
T Consensus       159 dgq~gq  164 (260)
T KOG1199|consen  159 DGQTGQ  164 (260)
T ss_pred             cCccch
Confidence            776544

>PRK08219 short chain dehydrogenase; Provisional

Probab=99.77  E-value=2.2e-17  Score=128.05  Aligned_cols=136  Identities=24%  Similarity=0.349  Sum_probs=109.1

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      .|+++||||+++||++++++|+++ ++|++++|+.++.++..++.      ..+.++.+|++|.  +.++++.+.++  +
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~--~~~~~~~~~~~--~   71 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAEL------PGATPFPVDLTDP--EAIAAAVEQLG--R   71 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHh------ccceEEecCCCCH--HHHHHHHHhcC--C
Confidence            478999999999999999999999 99999999987665544322      1356789999985  45555555554  4


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +|++||++|....  .++.+.+.+++++++++|+.+++.+++.+++.+.++ .++ +|++||..+..+.+.
T Consensus        72 id~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~-~v~~ss~~~~~~~~~  138 (227)
T PRK08219         72 LDVLVHNAGVADL--GPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA-HGH-VVFINSGAGLRANPG  138 (227)
T ss_pred             CCEEEECCCcCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCe-EEEEcchHhcCcCCC
Confidence            6699999998654  346778899999999999999999999999988765 456 999999888776654

>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]

Probab=99.76  E-value=1.2e-17  Score=128.07  Aligned_cols=144  Identities=22%  Similarity=0.235  Sum_probs=120.2

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCC-----CcEEEEEcChhhHHHHHHHHHHhcC--CceEEEEEEecCC--CchHHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTG-----LNLVLVGRNPDKLKDVSDSIQAKYA--KTQIKSVVVDFSG--DLDEGVER  123 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g-----~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~--~~~~~~~~  123 (206)
                      .|+++|||++||+|.++|++|.+..     .++++++|+.++.++++..+.+-++  ..++.++.+|+++  ++.++..+
T Consensus         3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~d   82 (341)
T KOG1478|consen    3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASKD   82 (341)
T ss_pred             ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHHH
Confidence            5899999999999999999999764     3588899999999999999999887  6778899999997  45777788


Q ss_pred             HHHHhcCCCccEEEEeccccCCcc------------cc-------------cccCCHHHHHHHHhhhhhHHHHHHHHHhh
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYA------------RF-------------FHEVDQVLLKNLIKVNVEGTTKVTQAVLP  178 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~------------~~-------------~~~~~~~~~~~~~~~N~~g~~~~~~~~~~  178 (206)
                      +..+++++|  .+..|||+.....            .|             --..+.|++..++++|++|+|.+.+.+.|
T Consensus        83 i~~rf~~ld--~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~p  160 (341)
T KOG1478|consen   83 IKQRFQRLD--YIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEP  160 (341)
T ss_pred             HHHHhhhcc--EEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhh
Confidence            888888755  8999999875211            00             02356688999999999999999999999


Q ss_pred             hhHhCCCCceEEEeccccccc
Q 028656          179 GMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       179 ~~~~~~~g~~iv~isS~~~~~  199 (206)
                      .+..++... +|-+||..+..
T Consensus       161 ll~~~~~~~-lvwtSS~~a~k  180 (341)
T KOG1478|consen  161 LLCHSDNPQ-LVWTSSRMARK  180 (341)
T ss_pred             HhhcCCCCe-EEEEeeccccc
Confidence            998888777 99999977643

>PRK07806 short chain dehydrogenase; Provisional

Probab=99.75  E-value=1.1e-17  Score=131.72  Aligned_cols=133  Identities=22%  Similarity=0.259  Sum_probs=100.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh-hHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD-KLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.+ ..++..++++..  +.++..+.+|+++..  ++.++++.+.
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA--GGRASAVGADLTDEESVAALMDTAREE   81 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999999999999999764 455666666543  445788899999752  3444555555


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      +++  +|++|||||.....     +.   +++..+++|+.|++.+++++.|.|.+  .++ ||++||..+.
T Consensus        82 ~~~--~d~vi~~ag~~~~~-----~~---~~~~~~~vn~~~~~~l~~~~~~~~~~--~~~-iv~isS~~~~  139 (248)
T PRK07806         82 FGG--LDALVLNASGGMES-----GM---DEDYAMRLNRDAQRNLARAALPLMPA--GSR-VVFVTSHQAH  139 (248)
T ss_pred             CCC--CcEEEECCCCCCCC-----CC---CcceeeEeeeHHHHHHHHHHHhhccC--Cce-EEEEeCchhh
Confidence            554  56999999864321     11   23567999999999999999998843  356 9999996553

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=99.75  E-value=1.9e-17  Score=161.66  Aligned_cols=141  Identities=16%  Similarity=0.225  Sum_probs=110.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHC-CCcEEEEEcCh--------------h----------------------------
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNP--------------D----------------------------   88 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~--------------~----------------------------   88 (206)
                      +|++++||||++|||+++|++|+++ |++|++++|+.              +                            
T Consensus      1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813      1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence            5899999999999999999999988 69999999982              0                            


Q ss_pred             -----hHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHH
Q 028656           89 -----KLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNL  161 (206)
Q Consensus        89 -----~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~  161 (206)
                           +.++..+++++  .+.++.++.||++|.  +++.++.+.+. +  .+|++|||||+...  +++.+.+.++|++.
T Consensus      2076 ~~~~~ei~~~la~l~~--~G~~v~y~~~DVtD~~av~~av~~v~~~-g--~IDgVVhnAGv~~~--~~i~~~t~e~f~~v 2148 (2582)
T TIGR02813      2076 VLSSLEIAQALAAFKA--AGASAEYASADVTNSVSVAATVQPLNKT-L--QITGIIHGAGVLAD--KHIQDKTLEEFNAV 2148 (2582)
T ss_pred             cchhHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHh-C--CCcEEEECCccCCC--CCcccCCHHHHHHH
Confidence                 01111222222  256788899999985  24455555544 3  46799999999865  45889999999999


Q ss_pred             HhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          162 IKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       162 ~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++|+.|++.+.+++.+.+    .++ ||++||..|..+.+++
T Consensus      2149 ~~~nv~G~~~Ll~al~~~~----~~~-IV~~SSvag~~G~~gq 2186 (2582)
T TIGR02813      2149 YGTKVDGLLSLLAALNAEN----IKL-LALFSSAAGFYGNTGQ 2186 (2582)
T ss_pred             HHHHHHHHHHHHHHHHHhC----CCe-EEEEechhhcCCCCCc
Confidence            9999999999999986643    345 9999999999998865

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.75  E-value=4e-17  Score=121.20  Aligned_cols=140  Identities=15%  Similarity=0.189  Sum_probs=105.9

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHH---HHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDV---SDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA  127 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~  127 (206)
                      |+++||||++|||++++++|+++|+ .|++++|+.+..++.   .++++.  .+.++..+.+|+++..  ++.++...+.
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEA--LGAEVTVVACDVADRAALAAALAAIPAR   78 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5799999999999999999999997 688888876544332   233433  2457788899998752  3444555555


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|.+|||||.....  ++.+.+.+++++++++|+.+++.+.+++.+    .+.++ ++++||..+..+.++.
T Consensus        79 ~~~--id~li~~ag~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~-ii~~ss~~~~~~~~~~  146 (180)
T smart00822       79 LGP--LRGVIHAAGVLDDG--LLANLTPERFAAVLAPKVDGAWNLHELTRD----LPLDF-FVLFSSVAGVLGNPGQ  146 (180)
T ss_pred             cCC--eeEEEEccccCCcc--ccccCCHHHHHHhhchHhHHHHHHHHHhcc----CCcce-EEEEccHHHhcCCCCc
Confidence            554  56999999987543  367889999999999999999999999743    34456 9999999887776643

It uses NADPH to reduce the keto group to a hydroxy group.

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.73  E-value=2.2e-16  Score=119.08  Aligned_cols=139  Identities=17%  Similarity=0.233  Sum_probs=100.5

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh---hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP---DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +++||||.+|||..++++|+++|. ++++++|+.   ...++..++++..  +.++.+..||++|.  +.++++.+....
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~--g~~v~~~~~Dv~d~--~~v~~~~~~~~~   77 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESA--GARVEYVQCDVTDP--EAVAAALAQLRQ   77 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHT--T-EEEEEE--TTSH--HHHHHHHHTSHT
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhC--CCceeeeccCccCH--HHHHHHHHHHHh
Confidence            799999999999999999999976 899999993   2455667777764  77999999999987  445555444422


Q ss_pred             --CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          131 --LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 --~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                        .+++.+||+||...+  .++.+.+.+++++.+...+.|..++.+.+.+    ..... +|++||.++..+.|++
T Consensus        78 ~~~~i~gVih~ag~~~~--~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~----~~l~~-~i~~SSis~~~G~~gq  146 (181)
T PF08659_consen   78 RFGPIDGVIHAAGVLAD--APIQDQTPDEFDAVLAPKVRGLWNLHEALEN----RPLDF-FILFSSISSLLGGPGQ  146 (181)
T ss_dssp             TSS-EEEEEE---------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTT----TTTSE-EEEEEEHHHHTT-TTB
T ss_pred             ccCCcceeeeeeeeecc--cccccCCHHHHHHHHhhhhhHHHHHHHHhhc----CCCCe-EEEECChhHhccCcch
Confidence              157799999999876  4589999999999999999999999998754    34455 9999999999999876

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=99.71  E-value=2.6e-16  Score=128.77  Aligned_cols=132  Identities=19%  Similarity=0.159  Sum_probs=97.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .+|+++||||+|+||++++++|+++|++|++++|+.+..++..+.........++.++.+|+++.  +.+++   .+.+ 
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~--~~~~~---~~~~-   77 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDE--GSFEL---AIDG-   77 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCc--hHHHH---HHcC-
Confidence            47899999999999999999999999999999998766544432222111234678889999986  33333   3333 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                       +|++|||||....      ..+.+++.+.+++|+.|++++++++.+.+   +.++ ||++||.+++.+
T Consensus        78 -~d~vih~A~~~~~------~~~~~~~~~~~~~n~~g~~~ll~a~~~~~---~~~~-iv~~SS~~~~~~  135 (325)
T PLN02989         78 -CETVFHTASPVAI------TVKTDPQVELINPAVNGTINVLRTCTKVS---SVKR-VILTSSMAAVLA  135 (325)
T ss_pred             -CCEEEEeCCCCCC------CCCCChHHHHHHHHHHHHHHHHHHHHHcC---CceE-EEEecchhheec
Confidence             5699999996421      22344568899999999999999987743   2355 999999877654

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=99.66  E-value=3e-15  Score=128.76  Aligned_cols=128  Identities=17%  Similarity=0.207  Sum_probs=99.0

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHh-----c--CCceEEEEEEecCCCchHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAK-----Y--AKTQIKSVVVDFSGDLDEGVER  123 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~-----~--~~~~~~~~~~d~~~~~~~~~~~  123 (206)
                      ..||+++||||+||||++++++|+++|++|++++|+.++++++.+++...     +  ...++.++.+|+.+.     +.
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~-----es  152 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKP-----DQ  152 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCH-----HH
Confidence            46899999999999999999999999999999999998887776655431     1  123578899999875     33


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      +.+.+++  +|++|||+|....        ...++...+++|+.|+.++++++.+    .+.++ ||++||..+.
T Consensus       153 I~~aLgg--iDiVVn~AG~~~~--------~v~d~~~~~~VN~~Gt~nLl~Aa~~----agVgR-IV~VSSiga~  212 (576)
T PLN03209        153 IGPALGN--ASVVICCIGASEK--------EVFDVTGPYRIDYLATKNLVDAATV----AKVNH-FILVTSLGTN  212 (576)
T ss_pred             HHHHhcC--CCEEEEccccccc--------cccchhhHHHHHHHHHHHHHHHHHH----hCCCE-EEEEccchhc
Confidence            4456675  4599999987532        1123677899999999999999754    35566 9999998763

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=99.64  E-value=4.7e-15  Score=122.63  Aligned_cols=129  Identities=14%  Similarity=0.128  Sum_probs=93.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      ++||+++||||+|+||++++++|+++|++|++++|+.+...+..+.+..   ..++..+.+|+++.  +.++.+.+   .
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~--~~~~~~~~---~   73 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNL---AKKIEDHFGDIRDA--AKLRKAIA---E   73 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhh---cCCceEEEccCCCH--HHHHHHHh---h
Confidence            3589999999999999999999999999999999987654433333321   23466788999876  33333333   2


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEecccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELM  198 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~  198 (206)
                      .++|++||+||....      +.+.+++...+++|+.++..+++++.+    .+ .++ +|++||...+
T Consensus        74 ~~~d~vih~A~~~~~------~~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~-iv~~SS~~vy  131 (349)
T TIGR02622        74 FKPEIVFHLAAQPLV------RKSYADPLETFETNVMGTVNLLEAIRA----IGSVKA-VVNVTSDKCY  131 (349)
T ss_pred             cCCCEEEECCccccc------ccchhCHHHHHHHhHHHHHHHHHHHHh----cCCCCE-EEEEechhhh
Confidence            357799999985321      234455678899999999999998743    23 345 9999996544

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=99.63  E-value=1.1e-14  Score=119.27  Aligned_cols=127  Identities=17%  Similarity=0.249  Sum_probs=92.5

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      ++||+++||||+|+||++++++|+++|  ++|++++|+..+..++.+.+    ....+.++.+|++|.  +.   +.+.+
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~----~~~~~~~v~~Dl~d~--~~---l~~~~   72 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF----PAPCLRFFIGDVRDK--ER---LTRAL   72 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh----CCCcEEEEEccCCCH--HH---HHHHH
Confidence            358999999999999999999999986  68999999876544433332    234677889999986  33   33334


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      ++  +|++||+||....   +..+.++   ++++++|+.|+.++++++.+    .+.++ ||++||..+..
T Consensus        73 ~~--iD~Vih~Ag~~~~---~~~~~~~---~~~~~~Nv~g~~~ll~aa~~----~~~~~-iV~~SS~~~~~  130 (324)
T TIGR03589        73 RG--VDYVVHAAALKQV---PAAEYNP---FECIRTNINGAQNVIDAAID----NGVKR-VVALSTDKAAN  130 (324)
T ss_pred             hc--CCEEEECcccCCC---chhhcCH---HHHHHHHHHHHHHHHHHHHH----cCCCE-EEEEeCCCCCC
Confidence            43  5699999997532   1223332   46899999999999999865    34456 99999976543

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=99.62  E-value=4.2e-15  Score=122.43  Aligned_cols=138  Identities=18%  Similarity=0.140  Sum_probs=94.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHH-HHHHHHHH--hcCCceEEEEEEecCCCchHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK-DVSDSIQA--KYAKTQIKSVVVDFSGDLDEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~-~~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~  126 (206)
                      +.++|+++||||+|+||++++++|+++|++|++++|+.+... ...+.+..  ...+..+.++.+|++|.  +.++.+.+
T Consensus         3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~--~~~~~~~~   80 (340)
T PLN02653          3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDA--SSLRRWLD   80 (340)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCH--HHHHHHHH
Confidence            355899999999999999999999999999999998754311 11111110  01134578889999986  33433333


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      .   ..+|++||+||.....      ...++.+..+++|+.|+.++++++.+...+++...++|++||.+.+
T Consensus        81 ~---~~~d~Vih~A~~~~~~------~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vy  143 (340)
T PLN02653         81 D---IKPDEVYNLAAQSHVA------VSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMY  143 (340)
T ss_pred             H---cCCCEEEECCcccchh------hhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHh
Confidence            3   2467999999975431      1223346778999999999999998876543221238899886443

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.62  E-value=1.5e-14  Score=122.53  Aligned_cols=135  Identities=22%  Similarity=0.323  Sum_probs=112.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      ++||+++||||+|.||.++|+++++.+. ++++.+|++.++.....+++..++..++.+.-+|+.|.     +.+.+.+.
T Consensus       248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~-----~~~~~~~~  322 (588)
T COG1086         248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDR-----DRVERAME  322 (588)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccH-----HHHHHHHh
Confidence            5899999999999999999999999875 79999999999999999999887889999999999997     66666666


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      +.++|+++|+|+.-+-   |.-|..   ..+.+++|++|+.++++++..    .+..+ +|.+|+--+..|.
T Consensus       323 ~~kvd~VfHAAA~KHV---Pl~E~n---P~Eai~tNV~GT~nv~~aa~~----~~V~~-~V~iSTDKAV~Pt  383 (588)
T COG1086         323 GHKVDIVFHAAALKHV---PLVEYN---PEEAIKTNVLGTENVAEAAIK----NGVKK-FVLISTDKAVNPT  383 (588)
T ss_pred             cCCCceEEEhhhhccC---cchhcC---HHHHHHHhhHhHHHHHHHHHH----hCCCE-EEEEecCcccCCc
Confidence            6678899999987653   233333   356799999999999999865    45566 9999997776654

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=99.60  E-value=5.4e-14  Score=106.67  Aligned_cols=145  Identities=18%  Similarity=0.184  Sum_probs=119.1

Q ss_pred             ccCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           50 RKYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        50 ~~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      .++||+.+|+|-.  +.|+..+|+++.+.|+++..+..++ ++++-.+++.+..+.  ....+||++++  ++..++.+.
T Consensus         3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~~s--~~v~~cDV~~d~~i~~~f~~i~   79 (259)
T COG0623           3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEELGS--DLVLPCDVTNDESIDALFATIK   79 (259)
T ss_pred             ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhccC--CeEEecCCCCHHHHHHHHHHHH
Confidence            4679999999976  8999999999999999999999987 666655555543222  46789999975  367778888


Q ss_pred             HHhcCCCccEEEEeccccCC--cccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          126 EAIEGLDVGVLINNVGISYP--YARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~--~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      ++++.+|  .+||+-|.+..  -.+.+.|.+.|.|...+++...+...+++++.|.|.  + |.+|+.++=..+....|
T Consensus        80 ~~~g~lD--~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~--~-ggSiltLtYlgs~r~vP  153 (259)
T COG0623          80 KKWGKLD--GLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMN--N-GGSILTLTYLGSERVVP  153 (259)
T ss_pred             HhhCccc--EEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcC--C-CCcEEEEEeccceeecC
Confidence            8899655  99999988762  234578899999999999999999999999999873  3 44599999999988888

>KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.60  E-value=4.1e-16  Score=117.92  Aligned_cols=147  Identities=16%  Similarity=0.148  Sum_probs=96.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~  129 (206)
                      .++++++||+|+|||..+++.+.+++-.....+++....+  .+.+.-.++ ........|.+++.  ++..+..+.+.+
T Consensus         5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~--~~~L~v~~g-d~~v~~~g~~~e~~~l~al~e~~r~k~g   81 (253)
T KOG1204|consen    5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE--LEGLKVAYG-DDFVHVVGDITEEQLLGALREAPRKKGG   81 (253)
T ss_pred             cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc--ccceEEEec-CCcceechHHHHHHHHHHHHhhhhhcCC
Confidence            4789999999999999999988887654444333322221  011100001 11111222222221  222233333334


Q ss_pred             CCCccEEEEeccccCCccccc-ccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccCC
Q 028656          130 GLDVGVLINNVGISYPYARFF-HEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~-~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~~  204 (206)
                        ..|++|||||...+..+-+ +..+.++|+++++.|+++.+.+.+.++|.++++. .+- +||+||.++..|.+++
T Consensus        82 --kr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~-vVnvSS~aav~p~~~w  155 (253)
T KOG1204|consen   82 --KRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGN-VVNVSSLAAVRPFSSW  155 (253)
T ss_pred             --ceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCe-EEEecchhhhccccHH
Confidence              4669999999988754432 4668889999999999999999999999998775 455 9999999999888743

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=99.56  E-value=1.3e-13  Score=114.21  Aligned_cols=134  Identities=14%  Similarity=0.122  Sum_probs=94.9

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      ..+++++||||+|.||++++++|+++|++|++++|+.++.+...+.+..   +..+.++.+|+++.  +.+.+   .+.+
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~--~~~~~---~~~~   79 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEE--GSFDE---AVKG   79 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCH--HHHHH---HHcC
Confidence            4578899999999999999999999999999999987665554443321   34677889999986  33333   3333


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHH--HHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLL--KNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~--~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                        +|++||+||...... .....+++++  ..++++|+.|+..+++++.+..   +.++ ||++||.+.+.
T Consensus        80 --~d~Vih~A~~~~~~~-~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~---~~~~-~v~~SS~~vyg  143 (353)
T PLN02896         80 --CDGVFHVAASMEFDV-SSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK---TVKR-VVFTSSISTLT  143 (353)
T ss_pred             --CCEEEECCccccCCc-cccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC---CccE-EEEEechhhcc
Confidence              569999999764321 0112233332  4577888999999999986531   2345 99999977654

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=99.56  E-value=9.3e-14  Score=113.58  Aligned_cols=129  Identities=18%  Similarity=0.156  Sum_probs=91.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .||+++||||+|+||.+++++|+++|++|+++.|+.++.++..+..........+.++.+|+++.  +.++.   .+.+ 
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~---~~~~-   77 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEE--SSFEQ---AIEG-   77 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCc--chHHH---HHhC-
Confidence            57899999999999999999999999999999998765544332222111234677888999986  33333   3333 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                       +|++||+||.....     ..  +...+.+++|+.|+.++++++...   .+.++ ||++||..+.
T Consensus        78 -~d~vih~A~~~~~~-----~~--~~~~~~~~~nv~gt~~ll~~~~~~---~~v~r-vV~~SS~~~~  132 (322)
T PLN02986         78 -CDAVFHTASPVFFT-----VK--DPQTELIDPALKGTINVLNTCKET---PSVKR-VILTSSTAAV  132 (322)
T ss_pred             -CCEEEEeCCCcCCC-----CC--CchhhhhHHHHHHHHHHHHHHHhc---CCccE-EEEecchhhe
Confidence             56999999864221     11  123567899999999999987432   23345 9999998754

>PLN02240 UDP-glucose 4-epimerase

Probab=99.55  E-value=9.8e-14  Score=114.64  Aligned_cols=133  Identities=17%  Similarity=0.161  Sum_probs=91.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhc--CCceEEEEEEecCCCchHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKY--AKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      .+.+|+++||||+|++|++++++|+++|++|++++|......+..+.+....  ....+..+.+|+++.  ..++.+.+ 
T Consensus         2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~l~~~~~-   78 (352)
T PLN02240          2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDK--EALEKVFA-   78 (352)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCH--HHHHHHHH-
Confidence            3568999999999999999999999999999999876433222222222111  123567788999876  33333332 


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                        ..++|++||+||.....      .+.++..+.+++|+.++..+++++    .+.+.++ +|++||...+
T Consensus        79 --~~~~d~vih~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~-~v~~Ss~~vy  136 (352)
T PLN02240         79 --STRFDAVIHFAGLKAVG------ESVAKPLLYYDNNLVGTINLLEVM----AKHGCKK-LVFSSSATVY  136 (352)
T ss_pred             --hCCCCEEEEccccCCcc------ccccCHHHHHHHHHHHHHHHHHHH----HHcCCCE-EEEEccHHHh
Confidence              23577999999865321      122446778999999999999875    3344455 9999996443

>PLN02583 cinnamoyl-CoA reductase

Probab=99.55  E-value=1.8e-13  Score=110.88  Aligned_cols=128  Identities=12%  Similarity=0.097  Sum_probs=90.0

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh--HHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK--LKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      -.+|+++||||+|+||++++++|+++|++|+++.|+.++  ..+..+.+..  .+.++.++.+|++|.  +   .+.+.+
T Consensus         4 ~~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~--~~~~~~~~~~Dl~d~--~---~~~~~l   76 (297)
T PLN02583          4 ESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSC--EEERLKVFDVDPLDY--H---SILDAL   76 (297)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhccc--CCCceEEEEecCCCH--H---HHHHHH
Confidence            347899999999999999999999999999999996432  2222222211  134577888999986  2   233444


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      .+  .|.++|.++...       +.+ +++++++++|+.|+.++++++.+.+   +.++ ||++||.++..
T Consensus        77 ~~--~d~v~~~~~~~~-------~~~-~~~~~~~~~nv~gt~~ll~aa~~~~---~v~r-iV~~SS~~a~~  133 (297)
T PLN02583         77 KG--CSGLFCCFDPPS-------DYP-SYDEKMVDVEVRAAHNVLEACAQTD---TIEK-VVFTSSLTAVI  133 (297)
T ss_pred             cC--CCEEEEeCccCC-------ccc-ccHHHHHHHHHHHHHHHHHHHHhcC---CccE-EEEecchHhee
Confidence            44  447887664321       111 2357899999999999999987643   2355 99999987753

>PLN02572 UDP-sulfoquinovose synthase

Probab=99.55  E-value=1.4e-13  Score=117.13  Aligned_cols=136  Identities=15%  Similarity=0.099  Sum_probs=93.6

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh-------H---------HHHHHHHHHhcCCceEEEEEEe
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK-------L---------KDVSDSIQAKYAKTQIKSVVVD  112 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~d  112 (206)
                      -..++++++||||+|+||++++++|+++|++|++++|...+       .         .+..+.+... .+..+.++.+|
T Consensus        43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~v~~D  121 (442)
T PLN02572         43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEV-SGKEIELYVGD  121 (442)
T ss_pred             ccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHh-hCCcceEEECC
Confidence            34678999999999999999999999999999998753210       0         0001111111 12357788999


Q ss_pred             cCCCchHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC-CceEEE
Q 028656          113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK-GLSMLN  191 (206)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~~iv~  191 (206)
                      ++|.  +.++.+.+.   .++|++||+|+....   +..+.++++++..+++|+.|++++++++...    +. .+ +|+
T Consensus       122 l~d~--~~v~~~l~~---~~~D~ViHlAa~~~~---~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~----gv~~~-~V~  188 (442)
T PLN02572        122 ICDF--EFLSEAFKS---FEPDAVVHFGEQRSA---PYSMIDRSRAVFTQHNNVIGTLNVLFAIKEF----APDCH-LVK  188 (442)
T ss_pred             CCCH--HHHHHHHHh---CCCCEEEECCCcccC---hhhhcChhhHHHHHHHHHHHHHHHHHHHHHh----CCCcc-EEE
Confidence            9976  334443333   357799999975432   2344556667788999999999999987542    33 35 999


Q ss_pred             ecccccc
Q 028656          192 IGKAELM  198 (206)
Q Consensus       192 isS~~~~  198 (206)
                      +||...+
T Consensus       189 ~SS~~vY  195 (442)
T PLN02572        189 LGTMGEY  195 (442)
T ss_pred             Eecceec
Confidence            9997654

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=99.54  E-value=2.6e-14  Score=113.76  Aligned_cols=129  Identities=22%  Similarity=0.357  Sum_probs=88.9

Q ss_pred             EEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceE----EEEEEecCCCchHHHHHHHHHhcC
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQI----KSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      |+||||+|.||.++|+++++.+. ++++++|++.++-++.++++..+++.++    ..+.+|+.|.     +.+...+..
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~-----~~l~~~~~~   75 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDK-----ERLNRIFEE   75 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHH-----HHHHHHTT-
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCH-----HHHHHHHhh
Confidence            69999999999999999999985 7999999999999999999765544333    3345577765     555555665


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      .+||+++|.|+.-+.   |+.+..   ..+.+++|+.|+-++++++..    .+..+ +|++|+--+..|
T Consensus        76 ~~pdiVfHaAA~KhV---pl~E~~---p~eav~tNv~GT~nv~~aa~~----~~v~~-~v~ISTDKAv~P  134 (293)
T PF02719_consen   76 YKPDIVFHAAALKHV---PLMEDN---PFEAVKTNVLGTQNVAEAAIE----HGVER-FVFISTDKAVNP  134 (293)
T ss_dssp             -T-SEEEE------H---HHHCCC---HHHHHHHHCHHHHHHHHHHHH----TT-SE-EEEEEECGCSS-
T ss_pred             cCCCEEEEChhcCCC---ChHHhC---HHHHHHHHHHHHHHHHHHHHH----cCCCE-EEEccccccCCC
Confidence            678899999987653   233333   366799999999999999865    34556 999999777654

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PLN02214 cinnamoyl-CoA reductase

Probab=99.53  E-value=3.2e-13  Score=111.52  Aligned_cols=124  Identities=19%  Similarity=0.181  Sum_probs=90.3

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH-HHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV-SDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      .++++++||||+|.||++++++|+++|++|++++|+.+..... .+.+..  ...++.++.+|+++.  +.++   +.+.
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~--~~~~---~~~~   80 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG--GKERLILCKADLQDY--EALK---AAID   80 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhC--CCCcEEEEecCcCCh--HHHH---HHHh
Confidence            5688999999999999999999999999999999987643321 122211  123577788999876  3333   3333


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      +  +|++||+||...           ++.++.+++|+.|+.++++++.+    .+.++ ||++||..+..
T Consensus        81 ~--~d~Vih~A~~~~-----------~~~~~~~~~nv~gt~~ll~aa~~----~~v~r-~V~~SS~~avy  132 (342)
T PLN02214         81 G--CDGVFHTASPVT-----------DDPEQMVEPAVNGAKFVINAAAE----AKVKR-VVITSSIGAVY  132 (342)
T ss_pred             c--CCEEEEecCCCC-----------CCHHHHHHHHHHHHHHHHHHHHh----cCCCE-EEEeccceeee
Confidence            3  559999998531           12467799999999999999754    34455 99999976554

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=99.53  E-value=1.3e-13  Score=113.72  Aligned_cols=132  Identities=20%  Similarity=0.171  Sum_probs=89.1

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh-----HHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK-----LKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      |+++||||+|+||++++++|+++|++|++++|+.+.     ++.+.++... ..+..+.++.+|++|.  +.++++   +
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~--~~l~~~---~   74 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHN-VNKARMKLHYGDLTDS--SNLRRI---I   74 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhcccc-ccccceeEEEeccCCH--HHHHHH---H
Confidence            689999999999999999999999999999998642     2211111100 0123578889999986  333333   3


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      .+.++|++||+|+......      +.+.-...+++|+.|+.++++++.+.-.+ +..+ +|++||...+.
T Consensus        75 ~~~~~d~ViH~Aa~~~~~~------~~~~~~~~~~~n~~gt~~ll~a~~~~~~~-~~~~-~v~~SS~~vyg  137 (343)
T TIGR01472        75 DEIKPTEIYNLAAQSHVKV------SFEIPEYTADVDGIGTLRLLEAVRTLGLI-KSVK-FYQASTSELYG  137 (343)
T ss_pred             HhCCCCEEEECCcccccch------hhhChHHHHHHHHHHHHHHHHHHHHhCCC-cCee-EEEeccHHhhC
Confidence            3334679999999754311      11223566789999999999998763111 1135 99999975543

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN02650 dihydroflavonol-4-reductase

Probab=99.52  E-value=3e-13  Score=111.93  Aligned_cols=129  Identities=17%  Similarity=0.158  Sum_probs=91.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      ..|+++||||+|.||.+++++|+++|++|++++|+.+..++............++.++..|+.+.  +.++++   +.+ 
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~--~~~~~~---~~~-   77 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVE--GSFDDA---IRG-   77 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCCh--hhHHHH---HhC-
Confidence            46789999999999999999999999999999998766554433222111123577889999876  333333   333 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                       +|.+||+|+....     ...  +..++.+++|+.|+.++++++.+..   ..++ ||++||...+
T Consensus        78 -~d~ViH~A~~~~~-----~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~---~~~r-~v~~SS~~~~  132 (351)
T PLN02650         78 -CTGVFHVATPMDF-----ESK--DPENEVIKPTVNGMLSIMKACAKAK---TVRR-IVFTSSAGTV  132 (351)
T ss_pred             -CCEEEEeCCCCCC-----CCC--CchhhhhhHHHHHHHHHHHHHHhcC---CceE-EEEecchhhc
Confidence             5699999975421     111  2235778999999999999986531   1345 9999997544

>PLN00198 anthocyanidin reductase; Provisional

Probab=99.51  E-value=6.3e-13  Score=109.42  Aligned_cols=130  Identities=17%  Similarity=0.205  Sum_probs=90.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .++++++||||+|.||++++++|+++|++|+++.|+.+....... +........+.++.+|++|.  +.   +.+.+++
T Consensus         7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~--~~---~~~~~~~   80 (338)
T PLN00198          7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRALQELGDLKIFGADLTDE--ES---FEAPIAG   80 (338)
T ss_pred             CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhcCCCCceEEEEcCCCCh--HH---HHHHHhc
Confidence            458899999999999999999999999999999988755433221 11110112577889999986  22   3333343


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                        +|++||+|+...     ....  +...+.+++|+.|+..+++++.+.   .+.++ +|++||.+.+.
T Consensus        81 --~d~vih~A~~~~-----~~~~--~~~~~~~~~nv~g~~~ll~a~~~~---~~~~~-~v~~SS~~~~g  136 (338)
T PLN00198         81 --CDLVFHVATPVN-----FASE--DPENDMIKPAIQGVHNVLKACAKA---KSVKR-VILTSSAAAVS  136 (338)
T ss_pred             --CCEEEEeCCCCc-----cCCC--ChHHHHHHHHHHHHHHHHHHHHhc---CCccE-EEEeecceeee
Confidence              569999998431     1111  223567899999999999997652   23355 99999987654

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=99.51  E-value=2.5e-13  Score=112.43  Aligned_cols=132  Identities=15%  Similarity=0.126  Sum_probs=87.6

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEE-EEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      ++++||||+|+||++++++|.++|+++++ .+|.... .+.. .+.....+.++.++.+|++|.  +.++.+.+.   .+
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~Dl~d~--~~~~~~~~~---~~   74 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYA-GNLM-SLAPVAQSERFAFEKVDICDR--AELARVFTE---HQ   74 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccc-cchh-hhhhcccCCceEEEECCCcCh--HHHHHHHhh---cC
Confidence            57999999999999999999999987554 4544221 1111 111111234567788999986  334444332   24


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhH---hC-CCCceEEEecccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGML---KR-KKGLSMLNIGKAELM  198 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~---~~-~~g~~iv~isS~~~~  198 (206)
                      +|++||+||....      +.+.+++++.+++|+.|+..+++++.+.|.   .. +...++|++||.+.+
T Consensus        75 ~D~Vih~A~~~~~------~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vy  138 (355)
T PRK10217         75 PDCVMHLAAESHV------DRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVY  138 (355)
T ss_pred             CCEEEECCcccCc------chhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhc
Confidence            6799999986532      223456788999999999999999976432   11 112249999996543

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=99.51  E-value=3.8e-13  Score=109.76  Aligned_cols=128  Identities=16%  Similarity=0.186  Sum_probs=89.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      ++|+++||||+|.||++++++|+++|++|++++|+.+.................+.++.+|+.+.  +.++   +.+.+ 
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~--~~~~---~~~~~-   76 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEE--GSFD---SVVDG-   76 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCc--chHH---HHHcC-
Confidence            37899999999999999999999999999999998755333222111111124678889999986  2233   33343 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAEL  197 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~  197 (206)
                       +|++||+|+.....   .  ..+  .++++++|+.|+.++++++....   +.++ +|++||.++
T Consensus        77 -~d~Vih~A~~~~~~---~--~~~--~~~~~~~nv~gt~~ll~a~~~~~---~~~~-~v~~SS~~~  130 (322)
T PLN02662         77 -CEGVFHTASPFYHD---V--TDP--QAELIDPAVKGTLNVLRSCAKVP---SVKR-VVVTSSMAA  130 (322)
T ss_pred             -CCEEEEeCCcccCC---C--CCh--HHHHHHHHHHHHHHHHHHHHhCC---CCCE-EEEccCHHH
Confidence             56999999864321   1  111  24788999999999999975421   3345 999999764

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=99.47  E-value=1.4e-12  Score=105.01  Aligned_cols=130  Identities=22%  Similarity=0.218  Sum_probs=98.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH--HHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV--SDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      .++.|+||||+|-||..++++|+++|++|..+.|+++..++.  ..+++.  .+.+...+..|+.|.     +.+.+.+.
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~--a~~~l~l~~aDL~d~-----~sf~~ai~   77 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEG--AKERLKLFKADLLDE-----GSFDKAID   77 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhccc--CcccceEEecccccc-----chHHHHHh
Confidence            578999999999999999999999999999999999874442  333332  355689999999988     44444455


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      +.|  .++|.|.....     ...+++  .++++.++.|+.++.+++...   +.-.| +|++||.++..+.
T Consensus        78 gcd--gVfH~Asp~~~-----~~~~~e--~~li~pav~Gt~nVL~ac~~~---~sVkr-vV~TSS~aAv~~~  136 (327)
T KOG1502|consen   78 GCD--GVFHTASPVDF-----DLEDPE--KELIDPAVKGTKNVLEACKKT---KSVKR-VVYTSSTAAVRYN  136 (327)
T ss_pred             CCC--EEEEeCccCCC-----CCCCcH--HhhhhHHHHHHHHHHHHHhcc---CCcce-EEEeccHHHhccC
Confidence            445  99999864432     222222  578999999999999998642   22345 9999999988765

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=99.47  E-value=1.3e-12  Score=107.40  Aligned_cols=127  Identities=18%  Similarity=0.169  Sum_probs=87.2

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      +++||||+|+||++++++|+++|++|++++|..+........+... .+.++.++.+|++|.  +.++++.+   ..++|
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~--~~~~~~~~---~~~~d   75 (338)
T PRK10675          2 RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERL-GGKHPTFVEGDIRNE--ALLTEILH---DHAID   75 (338)
T ss_pred             eEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHh-cCCCceEEEccCCCH--HHHHHHHh---cCCCC
Confidence            5899999999999999999999999999887543332222222221 233466788999876  33443332   23577


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      ++||+||......      ..+...+.+++|+.++..+++++    ++.+.++ +|++||...+
T Consensus        76 ~vvh~a~~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~-~v~~Ss~~~y  128 (338)
T PRK10675         76 TVIHFAGLKAVGE------SVQKPLEYYDNNVNGTLRLISAM----RAANVKN-LIFSSSATVY  128 (338)
T ss_pred             EEEECCccccccc------hhhCHHHHHHHHHHHHHHHHHHH----HHcCCCE-EEEeccHHhh
Confidence            9999998754311      11233567899999999998875    3445556 9999997544

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=99.45  E-value=1.6e-12  Score=107.54  Aligned_cols=134  Identities=10%  Similarity=0.029  Sum_probs=92.4

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhc---CCceEEEEEEecCCCchHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKY---AKTQIKSVVVDFSGDLDEGVERI  124 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~  124 (206)
                      ++.+++++++||||+|-||..++++|.++|++|++++|.........+......   ...++.++.+|+.+.  +.+.. 
T Consensus        10 ~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~--~~l~~-   86 (348)
T PRK15181         10 KLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKF--TDCQK-   86 (348)
T ss_pred             cccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCH--HHHHH-
Confidence            466778999999999999999999999999999999986543222222221110   113567888999875  33333 


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                        .+.+  +|++||.|+.....   .   +.++....+++|+.|+.++++++.    +.+..+ +|++||...+.
T Consensus        87 --~~~~--~d~ViHlAa~~~~~---~---~~~~~~~~~~~Nv~gt~nll~~~~----~~~~~~-~v~~SS~~vyg  146 (348)
T PRK15181         87 --ACKN--VDYVLHQAALGSVP---R---SLKDPIATNSANIDGFLNMLTAAR----DAHVSS-FTYAASSSTYG  146 (348)
T ss_pred             --HhhC--CCEEEECccccCch---h---hhhCHHHHHHHHHHHHHHHHHHHH----HcCCCe-EEEeechHhhC
Confidence              3333  56999999865421   1   112234579999999999999864    344455 99999976554

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=99.41  E-value=4.3e-12  Score=106.55  Aligned_cols=128  Identities=16%  Similarity=0.158  Sum_probs=88.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHH--HHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKD--VSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      .++++++||||+|+||++++++|+++|++|++++|+.++.+.  ..++....  ...+.++.+|++|.  +.++.+.+..
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~--~~l~~~~~~~  133 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKE--LPGAEVVFGDVTDA--DSLRKVLFSE  133 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhh--cCCceEEEeeCCCH--HHHHHHHHHh
Confidence            457899999999999999999999999999999998765431  11112111  23467889999986  4455554443


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      +. ++|++|||+|.....       .    ...+++|+.++.++++++.    +.+.++ +|++||.....
T Consensus       134 ~~-~~D~Vi~~aa~~~~~-------~----~~~~~vn~~~~~~ll~aa~----~~gv~r-~V~iSS~~v~~  187 (390)
T PLN02657        134 GD-PVDVVVSCLASRTGG-------V----KDSWKIDYQATKNSLDAGR----EVGAKH-FVLLSAICVQK  187 (390)
T ss_pred             CC-CCcEEEECCccCCCC-------C----ccchhhHHHHHHHHHHHHH----HcCCCE-EEEEeeccccC
Confidence            31 466999998743211       1    1235678888888888753    445566 99999976543

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=99.40  E-value=1.4e-11  Score=101.48  Aligned_cols=146  Identities=14%  Similarity=0.059  Sum_probs=95.5

Q ss_pred             ccccCCcEEEEECCCChHHHH--HHHHHHHCCCcEEEEEcChhhH------------HHHHHHHHHhcCCceEEEEEEec
Q 028656           48 NLRKYGSWALVTGPTDGIGKS--FAFQLAKTGLNLVLVGRNPDKL------------KDVSDSIQAKYAKTQIKSVVVDF  113 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~--~a~~l~~~g~~V~~~~r~~~~~------------~~~~~~~~~~~~~~~~~~~~~d~  113 (206)
                      +....+|+++|||+++|+|.+  +|+.| +.|++++++++..++.            +.+.+.+++.  +.....+.||+
T Consensus        36 ~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~--G~~a~~i~~DV  112 (398)
T PRK13656         36 PIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAA--GLYAKSINGDA  112 (398)
T ss_pred             CcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhc--CCceEEEEcCC
Confidence            344568999999999999999  89999 9999998888643221            1233334332  44567789999


Q ss_pred             CCC--chHHHHHHHHHhcCCCccEEEEeccccCCcc-----------cc--------c-------------ccCCHHHHH
Q 028656          114 SGD--LDEGVERIKEAIEGLDVGVLINNVGISYPYA-----------RF--------F-------------HEVDQVLLK  159 (206)
Q Consensus       114 ~~~--~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~-----------~~--------~-------------~~~~~~~~~  159 (206)
                      +++  .++.++.+.+.+|+  +|++|||+|......           +|        +             ...+.++++
T Consensus       113 ss~E~v~~lie~I~e~~G~--IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~  190 (398)
T PRK13656        113 FSDEIKQKVIELIKQDLGQ--VDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIA  190 (398)
T ss_pred             CCHHHHHHHHHHHHHhcCC--CCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHH
Confidence            975  36677888888886  459999999874311           11        1             123445555


Q ss_pred             HHHhhhhhHH---HHHHH--HHhhhhHhCCCCceEEEeccccccccccC
Q 028656          160 NLIKVNVEGT---TKVTQ--AVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       160 ~~~~~N~~g~---~~~~~--~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+  ++++|.   ...++  ...+.|  ...+. +|..|...+....|.
T Consensus       191 ~T--v~vMggedw~~Wi~al~~a~ll--a~g~~-~va~TY~G~~~t~p~  234 (398)
T PRK13656        191 DT--VKVMGGEDWELWIDALDEAGVL--AEGAK-TVAYSYIGPELTHPI  234 (398)
T ss_pred             HH--HHhhccchHHHHHHHHHhcccc--cCCcE-EEEEecCCcceeecc
Confidence            44  344454   23333  333433  23344 999999998888883

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=99.39  E-value=5.2e-12  Score=104.47  Aligned_cols=129  Identities=16%  Similarity=0.119  Sum_probs=85.6

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCc-EEEEEcCh--hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLN-LVLVGRNP--DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~-V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      +++||||+|+||++++++|+++|++ |+.+++..  ...+...    ...++.++.++.+|++|.  +.++++.+.   .
T Consensus         2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Dl~d~--~~~~~~~~~---~   72 (352)
T PRK10084          2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLA----DVSDSERYVFEHADICDR--AELDRIFAQ---H   72 (352)
T ss_pred             eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHH----hcccCCceEEEEecCCCH--HHHHHHHHh---c
Confidence            5899999999999999999999986 44455432  1122211    111234567788999986  444444332   2


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC----CCCceEEEecccccc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR----KKGLSMLNIGKAELM  198 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~----~~g~~iv~isS~~~~  198 (206)
                      ++|++||+||.....      .+.+..++++++|+.|+..+++++.+.|.+.    ++.+++|++||...+
T Consensus        73 ~~d~vih~A~~~~~~------~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vy  137 (352)
T PRK10084         73 QPDAVMHLAAESHVD------RSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVY  137 (352)
T ss_pred             CCCEEEECCcccCCc------chhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhc
Confidence            577999999865321      1112336789999999999999998765321    122249999996544

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=99.38  E-value=7.1e-12  Score=101.67  Aligned_cols=126  Identities=17%  Similarity=0.135  Sum_probs=85.5

Q ss_pred             EEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhh-HHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDK-LKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      +++||||+|+||++++++|++.|  .+|++.+|.... -.+..+.+.   ....+.++.+|+++.  +.++++.+.   .
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~--~~~~~~~~~---~   72 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLE---DNPRYRFVKGDIGDR--ELVSRLFTE---H   72 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhc---cCCCcEEEEcCCcCH--HHHHHHHhh---c
Confidence            48999999999999999999987  689888764321 111111221   123567788999986  444444332   3


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      ++|++||+||....      +.+.+..+.++++|+.++..+++++.+.+   ...+ +|++||...+
T Consensus        73 ~~d~vi~~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~-~i~~Ss~~v~  129 (317)
T TIGR01181        73 QPDAVVHFAAESHV------DRSISGPAAFIETNVVGTYTLLEAVRKYW---HEFR-FHHISTDEVY  129 (317)
T ss_pred             CCCEEEEcccccCc------hhhhhCHHHHHHHHHHHHHHHHHHHHhcC---CCce-EEEeecccee
Confidence            46799999986532      22334567789999999999999876532   1235 9999996543

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=99.38  E-value=6.2e-12  Score=99.33  Aligned_cols=125  Identities=19%  Similarity=0.098  Sum_probs=92.8

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      .+++||||+|-||.+++++|++.|++|+++|.-.....+..+..       ...+.+.|+.|.  +.++++.++   .+|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~-------~~~f~~gDi~D~--~~L~~vf~~---~~i   68 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL-------QFKFYEGDLLDR--ALLTAVFEE---NKI   68 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc-------cCceEEeccccH--HHHHHHHHh---cCC
Confidence            36999999999999999999999999999998665444333221       156789999987  555555444   357


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      |.++|-||...-++      |.++-.++++.|+.|+..+++++    ++.+... |||-||.+ ..+.|
T Consensus        69 daViHFAa~~~VgE------Sv~~Pl~Yy~NNv~gTl~Ll~am----~~~gv~~-~vFSStAa-vYG~p  125 (329)
T COG1087          69 DAVVHFAASISVGE------SVQNPLKYYDNNVVGTLNLIEAM----LQTGVKK-FIFSSTAA-VYGEP  125 (329)
T ss_pred             CEEEECccccccch------hhhCHHHHHhhchHhHHHHHHHH----HHhCCCE-EEEecchh-hcCCC
Confidence            79999999765432      55666889999999999999995    4455555 77766644 44444

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=99.37  E-value=1.4e-11  Score=97.35  Aligned_cols=122  Identities=22%  Similarity=0.232  Sum_probs=86.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .++++++||||+|++|++++++|+++|++|+++.|+.++.++...      .+..+.++.+|+.+..    +.+.+.++.
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~------~~~~~~~~~~Dl~d~~----~~l~~~~~~   84 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLP------QDPSLQIVRADVTEGS----DKLVEAIGD   84 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcc------cCCceEEEEeeCCCCH----HHHHHHhhc
Confidence            457899999999999999999999999999999999876543221      1235778889998742    233334421


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                       ++|++|+|+|..... .+.         ..+++|..++..+++++    .+.+.++ ||++||...+
T Consensus        85 -~~d~vi~~~g~~~~~-~~~---------~~~~~n~~~~~~ll~a~----~~~~~~~-iV~iSS~~v~  136 (251)
T PLN00141         85 -DSDAVICATGFRRSF-DPF---------APWKVDNFGTVNLVEAC----RKAGVTR-FILVSSILVN  136 (251)
T ss_pred             -CCCEEEECCCCCcCC-CCC---------CceeeehHHHHHHHHHH----HHcCCCE-EEEEcccccc
Confidence             356999999865321 111         12578889998888886    3455566 9999998643

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=99.36  E-value=7.8e-12  Score=101.82  Aligned_cols=125  Identities=18%  Similarity=0.144  Sum_probs=85.1

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      +++||||+|+||++++++|.++|++|++.+|......+.......   ...+..+.+|+.+.  +.++.+.+   ..++|
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~--~~~~~~~~---~~~~d   72 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGER---ITRVTFVEGDLRDR--ELLDRLFE---EHKID   72 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhcc---ccceEEEECCCCCH--HHHHHHHH---hCCCc
Confidence            379999999999999999999999999887654332222222211   11466778898876  33444333   23577


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      ++|||||.....+      +.++..+.++.|+.++..+++++.    +.+.++ +|++||...+
T Consensus        73 ~vv~~ag~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~-~v~~ss~~~~  125 (328)
T TIGR01179        73 AVIHFAGLIAVGE------SVQDPLKYYRNNVVNTLNLLEAMQ----QTGVKK-FIFSSSAAVY  125 (328)
T ss_pred             EEEECccccCcch------hhcCchhhhhhhHHHHHHHHHHHH----hcCCCE-EEEecchhhc
Confidence            9999999764321      222345678999999999998754    334455 9999986543

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=99.33  E-value=1.6e-11  Score=100.27  Aligned_cols=118  Identities=18%  Similarity=0.199  Sum_probs=86.5

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      ++++||||+|+||+.++++|+++|++|++++|+.+.....        ....+..+.+|+.+.  +   .+.+.+.+  +
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--------~~~~~~~~~~D~~~~--~---~l~~~~~~--~   65 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNL--------EGLDVEIVEGDLRDP--A---SLRKAVAG--C   65 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccccc--------ccCCceEEEeeCCCH--H---HHHHHHhC--C
Confidence            3689999999999999999999999999999987653221        122467889999886  3   33333443  4


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      |++||+|+....     .   .++.++.+++|+.++..+++++..    .+.++ +|++||..++.
T Consensus        66 d~vi~~a~~~~~-----~---~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~-~v~~SS~~~~~  118 (328)
T TIGR03466        66 RALFHVAADYRL-----W---APDPEEMYAANVEGTRNLLRAALE----AGVER-VVYTSSVATLG  118 (328)
T ss_pred             CEEEEeceeccc-----C---CCCHHHHHHHHHHHHHHHHHHHHH----hCCCe-EEEEechhhcC
Confidence            599999975321     1   122467789999999999998653    34456 99999977654

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=99.33  E-value=1.6e-11  Score=98.60  Aligned_cols=120  Identities=23%  Similarity=0.325  Sum_probs=88.9

Q ss_pred             EEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           57 LVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        57 lItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      +||||+|-+|+.++++|+++|  .+|.+.++.......  +....   .....++.+|++|.     +.+.+.+.+.+  
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~--~~~~~---~~~~~~~~~Di~d~-----~~l~~a~~g~d--   68 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL--KDLQK---SGVKEYIQGDITDP-----ESLEEALEGVD--   68 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc--hhhhc---ccceeEEEeccccH-----HHHHHHhcCCc--
Confidence            699999999999999999999  789998887654221  11111   12233889999987     55555666545  


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      +++|.|+......       ....++++++|+.|+-++++++..    .+..+ +|++||.++..+
T Consensus        69 ~V~H~Aa~~~~~~-------~~~~~~~~~vNV~GT~nvl~aa~~----~~Vkr-lVytSS~~vv~~  122 (280)
T PF01073_consen   69 VVFHTAAPVPPWG-------DYPPEEYYKVNVDGTRNVLEAARK----AGVKR-LVYTSSISVVFD  122 (280)
T ss_pred             eEEEeCccccccC-------cccHHHHHHHHHHHHHHHHHHHHH----cCCCE-EEEEcCcceeEe
Confidence            9999998754311       233478999999999999999854    45566 999999988765

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.31  E-value=6.4e-12  Score=98.73  Aligned_cols=102  Identities=21%  Similarity=0.277  Sum_probs=77.5

Q ss_pred             HHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCccEEEEeccccCCccc
Q 028656           69 FAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYAR  148 (206)
Q Consensus        69 ~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~  148 (206)
                      +|++|+++|++|++++|+.++.+     .        ...+++|+++.  +.++++.++..+ ++|++|||||+...   
T Consensus         1 ~a~~l~~~G~~Vv~~~r~~~~~~-----~--------~~~~~~Dl~~~--~~v~~~~~~~~~-~iD~li~nAG~~~~---   61 (241)
T PRK12428          1 TARLLRFLGARVIGVDRREPGMT-----L--------DGFIQADLGDP--ASIDAAVAALPG-RIDALFNIAGVPGT---   61 (241)
T ss_pred             ChHHHHhCCCEEEEEeCCcchhh-----h--------hHhhcccCCCH--HHHHHHHHHhcC-CCeEEEECCCCCCC---
Confidence            47899999999999999876532     1        13467899876  445555554432 57799999997521   


Q ss_pred             ccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          149 FFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       149 ~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                             +++++.+++|+.|++.+++.++|.|.+  .|+ ||++||.++..
T Consensus        62 -------~~~~~~~~vN~~~~~~l~~~~~~~~~~--~g~-Iv~isS~~~~~  102 (241)
T PRK12428         62 -------APVELVARVNFLGLRHLTEALLPRMAP--GGA-IVNVASLAGAE  102 (241)
T ss_pred             -------CCHHHhhhhchHHHHHHHHHHHHhccC--CcE-EEEeCcHHhhc
Confidence                   236889999999999999999998853  366 99999998863

>PLN02427 UDP-apiose/xylose synthase

Probab=99.29  E-value=5.2e-11  Score=99.82  Aligned_cols=128  Identities=15%  Similarity=0.126  Sum_probs=85.5

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHC-CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      .+.++++||||+|.||+.++++|+++ |++|++++|+.++.+...+.... .....+.++.+|+.|.  +.++   +.+.
T Consensus        12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~-~~~~~~~~~~~Dl~d~--~~l~---~~~~   85 (386)
T PLN02427         12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTV-PWSGRIQFHRINIKHD--SRLE---GLIK   85 (386)
T ss_pred             ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccc-cCCCCeEEEEcCCCCh--HHHH---HHhh
Confidence            44568999999999999999999998 58999999886554332211000 0123578889999886  3333   3333


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      +  +|++||+|+...+..  ... +   -.+.+..|+.++..+++++..    .+ .+ +|++||...+
T Consensus        86 ~--~d~ViHlAa~~~~~~--~~~-~---~~~~~~~n~~gt~~ll~aa~~----~~-~r-~v~~SS~~vY  140 (386)
T PLN02427         86 M--ADLTINLAAICTPAD--YNT-R---PLDTIYSNFIDALPVVKYCSE----NN-KR-LIHFSTCEVY  140 (386)
T ss_pred             c--CCEEEEcccccChhh--hhh-C---hHHHHHHHHHHHHHHHHHHHh----cC-CE-EEEEeeeeee
Confidence            3  559999998754311  111 1   123456799999999888632    23 45 9999997544

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=99.27  E-value=6.7e-11  Score=94.33  Aligned_cols=131  Identities=15%  Similarity=0.178  Sum_probs=97.6

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHh-cCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAK-YAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      +++|+||||+|-||.+.+.+|.++|+.|+++|.-.....+..+..+.. .....+.+...|+.|.  +.++++.+..+  
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~--~~L~kvF~~~~--   77 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDA--EALEKLFSEVK--   77 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCH--HHHHHHHhhcC--
Confidence            679999999999999999999999999999986443322222222222 2357899999999997  66677666655  


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                       +|.++|-|+......      +.+...++.+.|+.|++.++..+    ++.+... +|+.||...+.
T Consensus        78 -fd~V~Hfa~~~~vge------S~~~p~~Y~~nNi~gtlnlLe~~----~~~~~~~-~V~sssatvYG  133 (343)
T KOG1371|consen   78 -FDAVMHFAALAAVGE------SMENPLSYYHNNIAGTLNLLEVM----KAHNVKA-LVFSSSATVYG  133 (343)
T ss_pred             -CceEEeehhhhccch------hhhCchhheehhhhhHHHHHHHH----HHcCCce-EEEecceeeec
Confidence             669999998765432      34444888999999999999985    4556555 99988865543

>PLN02686 cinnamoyl-CoA reductase

Probab=99.26  E-value=1.3e-10  Score=96.96  Aligned_cols=129  Identities=11%  Similarity=0.161  Sum_probs=87.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhc----CCceEEEEEEecCCCchHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKY----AKTQIKSVVVDFSGDLDEGVERIK  125 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~  125 (206)
                      ..++|+++||||+|+||++++++|+++|++|+++.|+.+..+++. ++...+    .+..+.++.+|++|.  +.++++ 
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~-~l~~~~~~~~~~~~~~~v~~Dl~d~--~~l~~~-  125 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLR-EMEMFGEMGRSNDGIWTVMANLTEP--ESLHEA-  125 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HHhhhccccccCCceEEEEcCCCCH--HHHHHH-
Confidence            467899999999999999999999999999999899876655442 222111    012467788999886  333333 


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccc
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE  196 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~  196 (206)
                        +.+  +|.++|.|+......  ....    .+...++|+.++..+++++...   .+..+ +|++||.+
T Consensus       126 --i~~--~d~V~hlA~~~~~~~--~~~~----~~~~~~~nv~gt~~llea~~~~---~~v~r-~V~~SS~~  182 (367)
T PLN02686        126 --FDG--CAGVFHTSAFVDPAG--LSGY----TKSMAELEAKASENVIEACVRT---ESVRK-CVFTSSLL  182 (367)
T ss_pred             --HHh--ccEEEecCeeecccc--cccc----cchhhhhhHHHHHHHHHHHHhc---CCccE-EEEeccHH
Confidence              333  448889888754321  1111    1244678999999999986431   13445 99999964

>TIGR01746 Thioester-redct thioester reductase domain

Probab=99.25  E-value=1.4e-10  Score=95.81  Aligned_cols=127  Identities=18%  Similarity=0.237  Sum_probs=86.8

Q ss_pred             EEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhh---HHHHHHHHHHhcC-----C-ceEEEEEEecCCCc----hH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDK---LKDVSDSIQAKYA-----K-TQIKSVVVDFSGDL----DE  119 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~---~~~~~~~~~~~~~-----~-~~~~~~~~d~~~~~----~~  119 (206)
                      +++||||+|+||++++++|+++|  ++|+++.|+.+.   .+++.+.+.....     . .++.++.+|+++..    +.
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            48999999999999999999998  679999998653   2233333322110     1 46888899988642    22


Q ss_pred             HHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          120 GVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       120 ~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      ....   ..+  ++|++||||+.....         ..++...++|+.|+..+++.+..    .+..+ ++++||.....
T Consensus        81 ~~~~---~~~--~~d~vih~a~~~~~~---------~~~~~~~~~nv~g~~~ll~~a~~----~~~~~-~v~iSS~~v~~  141 (367)
T TIGR01746        81 EWER---LAE--NVDTIVHNGALVNWV---------YPYSELRAANVLGTREVLRLAAS----GRAKP-LHYVSTISVLA  141 (367)
T ss_pred             HHHH---HHh--hCCEEEeCCcEeccC---------CcHHHHhhhhhHHHHHHHHHHhh----CCCce-EEEEccccccC
Confidence            2222   223  366999999875421         12456788999999999988754    33344 99999987654


Q ss_pred             c
Q 028656          200 S  200 (206)
Q Consensus       200 ~  200 (206)
                      .
T Consensus       142 ~  142 (367)
T TIGR01746       142 A  142 (367)
T ss_pred             C
Confidence            3

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=99.21  E-value=2.4e-10  Score=94.46  Aligned_cols=120  Identities=14%  Similarity=0.205  Sum_probs=83.0

Q ss_pred             cEEEEECCCChHHHHHHHHHHHC-CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      ++++||||+|-||+.++++|+++ |++|+.++|+.++.....       +...+.++.+|+.++. +.+.   +...  +
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~-------~~~~~~~~~~Dl~~~~-~~~~---~~~~--~   68 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLV-------NHPRMHFFEGDITINK-EWIE---YHVK--K   68 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhc-------cCCCeEEEeCCCCCCH-HHHH---HHHc--C
Confidence            46999999999999999999986 699999998764332111       2335778889998431 2222   2233  3


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      +|++||+|+...+..  .    .++.+..+++|+.++.++++++..    .+ .+ +|++||...+
T Consensus        69 ~d~ViH~aa~~~~~~--~----~~~p~~~~~~n~~~~~~ll~aa~~----~~-~~-~v~~SS~~vy  122 (347)
T PRK11908         69 CDVILPLVAIATPAT--Y----VKQPLRVFELDFEANLPIVRSAVK----YG-KH-LVFPSTSEVY  122 (347)
T ss_pred             CCEEEECcccCChHH--h----hcCcHHHHHHHHHHHHHHHHHHHh----cC-Ce-EEEEecceee
Confidence            569999998754321  1    112356689999999998888643    33 45 9999997554

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.20  E-value=2.5e-10  Score=102.12  Aligned_cols=128  Identities=15%  Similarity=0.119  Sum_probs=86.9

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHC--CCcEEEEEcCh--hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKT--GLNLVLVGRNP--DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~--g~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  126 (206)
                      .++++++||||+|.||++++++|.++  |++|+.++|..  +......    .......+.++.+|+.|.  +.++.+. 
T Consensus         4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~----~~~~~~~v~~~~~Dl~d~--~~~~~~~-   76 (668)
T PLN02260          4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLN----PSKSSPNFKFVKGDIASA--DLVNYLL-   76 (668)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhh----hcccCCCeEEEECCCCCh--HHHHHHH-
Confidence            34789999999999999999999987  67899888753  2222211    111234577888999986  3333322 


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEecccccc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELM  198 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~  198 (206)
                        ...++|++||+|+.....      .+.++..+.+++|+.|+..+++++..    .+ .++ +|++||...+
T Consensus        77 --~~~~~D~ViHlAa~~~~~------~~~~~~~~~~~~Nv~gt~~ll~a~~~----~~~vkr-~I~~SS~~vy  136 (668)
T PLN02260         77 --ITEGIDTIMHFAAQTHVD------NSFGNSFEFTKNNIYGTHVLLEACKV----TGQIRR-FIHVSTDEVY  136 (668)
T ss_pred             --hhcCCCEEEECCCccCch------hhhhCHHHHHHHHHHHHHHHHHHHHh----cCCCcE-EEEEcchHHh
Confidence              112577999999875421      11222356789999999999988643    33 345 9999997544

>CHL00194 ycf39 Ycf39; Provisional

Probab=99.20  E-value=3.4e-10  Score=92.52  Aligned_cols=112  Identities=21%  Similarity=0.200  Sum_probs=80.0

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      +++||||+|.+|++++++|.++|++|.+++|+.++....    ..    ..+.++.+|+.|.     +.+.+.+.+  +|
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l----~~----~~v~~v~~Dl~d~-----~~l~~al~g--~d   66 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL----KE----WGAELVYGDLSLP-----ETLPPSFKG--VT   66 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH----hh----cCCEEEECCCCCH-----HHHHHHHCC--CC
Confidence            699999999999999999999999999999987543221    11    2356788899876     334445554  45


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAEL  197 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~  197 (206)
                      ++||+++....        +   .....++|+.++.++.+++.    +.+..+ +|++||..+
T Consensus        67 ~Vi~~~~~~~~--------~---~~~~~~~~~~~~~~l~~aa~----~~gvkr-~I~~Ss~~~  113 (317)
T CHL00194         67 AIIDASTSRPS--------D---LYNAKQIDWDGKLALIEAAK----AAKIKR-FIFFSILNA  113 (317)
T ss_pred             EEEECCCCCCC--------C---ccchhhhhHHHHHHHHHHHH----HcCCCE-EEEeccccc
Confidence            99998753211        1   12356778889888888864    345556 999999643

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=99.18  E-value=4.2e-10  Score=87.54  Aligned_cols=121  Identities=21%  Similarity=0.295  Sum_probs=88.4

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCccE
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGV  135 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id~  135 (206)
                      |+||||+|-+|.+++++|.++|+.|+.+.|+.........+       ..+....+|+.+.  +.++++.+..   ++|.
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~-------~~~~~~~~dl~~~--~~~~~~~~~~---~~d~   68 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK-------LNVEFVIGDLTDK--EQLEKLLEKA---NIDV   68 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH-------TTEEEEESETTSH--HHHHHHHHHH---TESE
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccccc-------ceEEEEEeecccc--cccccccccc---CceE
Confidence            69999999999999999999999999888877553322211       1578889999965  5555555554   5679


Q ss_pred             EEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          136 LINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       136 lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      ++|+|+.... +     .+.+.....++.|+.++..+.+++..    .+..+ +|++||...+.
T Consensus        69 vi~~a~~~~~-~-----~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~-~i~~sS~~~y~  121 (236)
T PF01370_consen   69 VIHLAAFSSN-P-----ESFEDPEEIIEANVQGTRNLLEAARE----AGVKR-FIFLSSASVYG  121 (236)
T ss_dssp             EEEEBSSSSH-H-----HHHHSHHHHHHHHHHHHHHHHHHHHH----HTTSE-EEEEEEGGGGT
T ss_pred             EEEeeccccc-c-----cccccccccccccccccccccccccc----ccccc-ccccccccccc
Confidence            9999987531 1     12244577889999999999888753    44455 99999965443

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=99.18  E-value=1.4e-10  Score=94.08  Aligned_cols=107  Identities=18%  Similarity=0.205  Sum_probs=76.2

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      +++||||+|-||++++++|.++| +|+.++|...                   ....|++|.  +.++++   +.+.++|
T Consensus         2 ~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~-------------------~~~~Dl~d~--~~~~~~---~~~~~~D   56 (299)
T PRK09987          2 NILLFGKTGQVGWELQRALAPLG-NLIALDVHST-------------------DYCGDFSNP--EGVAET---VRKIRPD   56 (299)
T ss_pred             eEEEECCCCHHHHHHHHHhhccC-CEEEeccccc-------------------cccCCCCCH--HHHHHH---HHhcCCC
Confidence            69999999999999999999999 7888887531                   124577775  333333   3333577


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      ++||+|+......      ..++-+..+++|+.|+.++++++..    .+ .+ +|++||...+
T Consensus        57 ~Vih~Aa~~~~~~------~~~~~~~~~~~N~~~~~~l~~aa~~----~g-~~-~v~~Ss~~Vy  108 (299)
T PRK09987         57 VIVNAAAHTAVDK------AESEPEFAQLLNATSVEAIAKAANE----VG-AW-VVHYSTDYVF  108 (299)
T ss_pred             EEEECCccCCcch------hhcCHHHHHHHHHHHHHHHHHHHHH----cC-Ce-EEEEccceEE
Confidence            9999998764321      1122356678999999999998753    22 35 9999996654

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=99.17  E-value=2.2e-10  Score=92.01  Aligned_cols=103  Identities=15%  Similarity=0.255  Sum_probs=75.5

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCccE
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGV  135 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id~  135 (206)
                      ++||||+|.||.+++++|.++|++|++++|+                       .+|+.+.  +   .+.+.+.+.++|+
T Consensus         2 ilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~-----------------------~~d~~~~--~---~~~~~~~~~~~d~   53 (287)
T TIGR01214         2 ILITGANGQLGRELVQQLSPEGRVVVALTSS-----------------------QLDLTDP--E---ALERLLRAIRPDA   53 (287)
T ss_pred             EEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc-----------------------ccCCCCH--H---HHHHHHHhCCCCE
Confidence            7999999999999999999999999999885                       2466654  3   3333344445779


Q ss_pred             EEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          136 LINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       136 lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      +||+||......      ..+..+..+++|+.++..+++++..    .+ .+ +|++||...+
T Consensus        54 vi~~a~~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~-~v~~Ss~~vy  104 (287)
T TIGR01214        54 VVNTAAYTDVDG------AESDPEKAFAVNALAPQNLARAAAR----HG-AR-LVHISTDYVF  104 (287)
T ss_pred             EEECCccccccc------cccCHHHHHHHHHHHHHHHHHHHHH----cC-Ce-EEEEeeeeee
Confidence            999998653211      1123456789999999999998643    23 35 9999996544

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.15  E-value=5.7e-10  Score=99.68  Aligned_cols=123  Identities=15%  Similarity=0.182  Sum_probs=86.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHC-CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      .++++++||||+|.||.+++++|+++ |++|+.++|+.......    .   ....+.++.+|++|.. ...   .+.+.
T Consensus       313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~----~---~~~~~~~~~gDl~d~~-~~l---~~~l~  381 (660)
T PRK08125        313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRF----L---GHPRFHFVEGDISIHS-EWI---EYHIK  381 (660)
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhh----c---CCCceEEEeccccCcH-HHH---HHHhc
Confidence            46889999999999999999999986 79999999976432211    1   2335777889998751 112   22233


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                        ++|++||.|+...+..  . .   ++.++.+++|+.++..+.+++..    .+ .+ +|++||...+
T Consensus       382 --~~D~ViHlAa~~~~~~--~-~---~~~~~~~~~Nv~~t~~ll~a~~~----~~-~~-~V~~SS~~vy  436 (660)
T PRK08125        382 --KCDVVLPLVAIATPIE--Y-T---RNPLRVFELDFEENLKIIRYCVK----YN-KR-IIFPSTSEVY  436 (660)
T ss_pred             --CCCEEEECccccCchh--h-c---cCHHHHHHhhHHHHHHHHHHHHh----cC-Ce-EEEEcchhhc
Confidence              3669999999765321  1 1   12245689999999999999753    23 34 9999997544

>PLN02206 UDP-glucuronate decarboxylase

Probab=99.15  E-value=5.4e-10  Score=95.27  Aligned_cols=122  Identities=16%  Similarity=0.174  Sum_probs=84.5

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .++++++||||+|.||+.++++|.++|++|++++|......+   .........++..+..|+.+.   .       +. 
T Consensus       117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~---~~~~~~~~~~~~~i~~D~~~~---~-------l~-  182 (442)
T PLN02206        117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKE---NVMHHFSNPNFELIRHDVVEP---I-------LL-  182 (442)
T ss_pred             cCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchh---hhhhhccCCceEEEECCccCh---h-------hc-
Confidence            367999999999999999999999999999999876432221   111111234566777777653   1       11 


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                       ++|++||.|+...+..  . +   ++..+.+++|+.|+.++.+++..    .+ .+ +|++||...+.
T Consensus       183 -~~D~ViHlAa~~~~~~--~-~---~~p~~~~~~Nv~gt~nLleaa~~----~g-~r-~V~~SS~~VYg  238 (442)
T PLN02206        183 -EVDQIYHLACPASPVH--Y-K---FNPVKTIKTNVVGTLNMLGLAKR----VG-AR-FLLTSTSEVYG  238 (442)
T ss_pred             -CCCEEEEeeeecchhh--h-h---cCHHHHHHHHHHHHHHHHHHHHH----hC-CE-EEEECChHHhC
Confidence             3669999998764311  1 1   12356789999999999998743    33 35 99999976553

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=99.14  E-value=1.4e-09  Score=81.67  Aligned_cols=107  Identities=21%  Similarity=0.288  Sum_probs=81.0

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCccE
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGV  135 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id~  135 (206)
                      |+|+||+|.+|+.++++|.++|++|.++.|++++.++          ...+.++.+|+.|.     +.+.+.+.+.|  +
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~-----~~~~~al~~~d--~   63 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDP-----DSVKAALKGAD--A   63 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCH-----HHHHHHHTTSS--E
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhh-----hhhhhhhhhcc--h
Confidence            6899999999999999999999999999999987665          34578899999876     55566666544  9


Q ss_pred             EEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          136 LINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       136 lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +|+++|....          +             ...++.++..+.+.+..+ +|++||.......+.
T Consensus        64 vi~~~~~~~~----------~-------------~~~~~~~~~a~~~~~~~~-~v~~s~~~~~~~~~~  107 (183)
T PF13460_consen   64 VIHAAGPPPK----------D-------------VDAAKNIIEAAKKAGVKR-VVYLSSAGVYRDPPG  107 (183)
T ss_dssp             EEECCHSTTT----------H-------------HHHHHHHHHHHHHTTSSE-EEEEEETTGTTTCTS
T ss_pred             hhhhhhhhcc----------c-------------cccccccccccccccccc-ceeeeccccCCCCCc
Confidence            9999864321          0             334455555566667666 999999886665443

...

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=99.14  E-value=6e-10  Score=94.81  Aligned_cols=122  Identities=15%  Similarity=0.145  Sum_probs=83.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .+.++++||||+|.||+.++++|.++|++|++++|......+.....   ..+.++..+..|+.+..          +. 
T Consensus       118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~---~~~~~~~~~~~Di~~~~----------~~-  183 (436)
T PLN02166        118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHL---FGNPRFELIRHDVVEPI----------LL-  183 (436)
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhh---ccCCceEEEECcccccc----------cc-
Confidence            45688999999999999999999999999999998643222111111   12334566777776531          11 


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                       ++|++||+|+......  . +   ++-.+.+++|+.|+..+++++..    .+ .+ +|++||...+.
T Consensus       184 -~~D~ViHlAa~~~~~~--~-~---~~p~~~~~~Nv~gT~nLleaa~~----~g-~r-~V~~SS~~VYg  239 (436)
T PLN02166        184 -EVDQIYHLACPASPVH--Y-K---YNPVKTIKTNVMGTLNMLGLAKR----VG-AR-FLLTSTSEVYG  239 (436)
T ss_pred             -CCCEEEECceeccchh--h-c---cCHHHHHHHHHHHHHHHHHHHHH----hC-CE-EEEECcHHHhC
Confidence             4679999998754321  1 1   12357799999999999988753    23 35 99999976543

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.09  E-value=2.1e-09  Score=95.93  Aligned_cols=126  Identities=16%  Similarity=0.157  Sum_probs=84.4

Q ss_pred             EEEEECCCChHHHHHHHHHH--HCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           55 WALVTGPTDGIGKSFAFQLA--KTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~--~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      +++||||+|.||++++++|+  ++|++|.+++|+... ....+ +.......++..+.+|+++..........+.+.  +
T Consensus         2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~-~~~~~-~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~--~   77 (657)
T PRK07201          2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL-SRLEA-LAAYWGADRVVPLVGDLTEPGLGLSEADIAELG--D   77 (657)
T ss_pred             eEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH-HHHHH-HHHhcCCCcEEEEecccCCccCCcCHHHHHHhc--C
Confidence            69999999999999999999  589999999996532 11111 111112246788899998742111111222233  4


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      +|++||+||.....      .+   ..+..++|+.|+..+++++..    .+..+ +|++||...+
T Consensus        78 ~D~Vih~Aa~~~~~------~~---~~~~~~~nv~gt~~ll~~a~~----~~~~~-~v~~SS~~v~  129 (657)
T PRK07201         78 IDHVVHLAAIYDLT------AD---EEAQRAANVDGTRNVVELAER----LQAAT-FHHVSSIAVA  129 (657)
T ss_pred             CCEEEECceeecCC------CC---HHHHHHHHhHHHHHHHHHHHh----cCCCe-EEEEeccccc
Confidence            66999999975321      11   245678999999999888643    34455 9999997654

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=99.09  E-value=1.3e-09  Score=91.08  Aligned_cols=128  Identities=12%  Similarity=0.002  Sum_probs=84.8

Q ss_pred             CcccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHH
Q 028656           46 AKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIK  125 (206)
Q Consensus        46 ~~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  125 (206)
                      +..+.-++++++||||+|.||++++++|.++|++|+.++|..+...      ..  ......+..+|+.+.  +.   +.
T Consensus        14 ~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~------~~--~~~~~~~~~~Dl~d~--~~---~~   80 (370)
T PLN02695         14 EPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHM------SE--DMFCHEFHLVDLRVM--EN---CL   80 (370)
T ss_pred             CCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccc------cc--ccccceEEECCCCCH--HH---HH
Confidence            3445567899999999999999999999999999999998653211      00  011134566788765  22   22


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      +.+.  ++|++||.|+......  +.+..   ....++.|+.++.++++++.    +.+.++ +|++||...+
T Consensus        81 ~~~~--~~D~Vih~Aa~~~~~~--~~~~~---~~~~~~~N~~~t~nll~aa~----~~~vk~-~V~~SS~~vY  141 (370)
T PLN02695         81 KVTK--GVDHVFNLAADMGGMG--FIQSN---HSVIMYNNTMISFNMLEAAR----INGVKR-FFYASSACIY  141 (370)
T ss_pred             HHHh--CCCEEEEcccccCCcc--ccccC---chhhHHHHHHHHHHHHHHHH----HhCCCE-EEEeCchhhc
Confidence            2233  3569999998543211  11111   23457789999999999864    334445 9999997543

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.09  E-value=1.1e-09  Score=88.71  Aligned_cols=121  Identities=20%  Similarity=0.224  Sum_probs=85.1

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      .++||||+|.||+.++++|.+.|++|..++|.........         ..+.+..+|+.+.  +....   ...... |
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~~~~~~d~~~~--~~~~~---~~~~~~-d   66 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL---------SGVEFVVLDLTDR--DLVDE---LAKGVP-D   66 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc---------cccceeeecccch--HHHHH---HHhcCC-C
Confidence            3999999999999999999999999999999876543221         2356677777765  22222   223321 5


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      .++|+|+......    .... .....+++|+.++.++.+++..    .+..+ +|+.||.+...+
T Consensus        67 ~vih~aa~~~~~~----~~~~-~~~~~~~~nv~gt~~ll~aa~~----~~~~~-~v~~ss~~~~~~  122 (314)
T COG0451          67 AVIHLAAQSSVPD----SNAS-DPAEFLDVNVDGTLNLLEAARA----AGVKR-FVFASSVSVVYG  122 (314)
T ss_pred             EEEEccccCchhh----hhhh-CHHHHHHHHHHHHHHHHHHHHH----cCCCe-EEEeCCCceECC
Confidence            9999998775422    1111 3456899999999999999754    45556 999777555543

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=99.06  E-value=9.4e-10  Score=89.35  Aligned_cols=118  Identities=19%  Similarity=0.172  Sum_probs=73.5

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcCCCc
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEGLDV  133 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~i  133 (206)
                      ++||||+|.||++++++|+++|++++++.|+....... ..           ...+|+.|..  ++..+.+.+.....++
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~-~~-----------~~~~~~~d~~~~~~~~~~~~~~~~~~~~   69 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF-VN-----------LVDLDIADYMDKEDFLAQIMAGDDFGDI   69 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHH-Hh-----------hhhhhhhhhhhHHHHHHHHhcccccCCc
Confidence            79999999999999999999999777766654332111 01           1123444321  1222222111011157


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      |++||+||.....     +.+.   +.+++.|+.++..+++++..    .+ .+ +|++||.+.+.
T Consensus        70 d~Vih~A~~~~~~-----~~~~---~~~~~~n~~~t~~ll~~~~~----~~-~~-~i~~SS~~vyg  121 (308)
T PRK11150         70 EAIFHEGACSSTT-----EWDG---KYMMDNNYQYSKELLHYCLE----RE-IP-FLYASSAATYG  121 (308)
T ss_pred             cEEEECceecCCc-----CCCh---HHHHHHHHHHHHHHHHHHHH----cC-Cc-EEEEcchHHhC
Confidence            7999999864321     1122   34689999999999998743    33 35 99999986544

>PRK05865 hypothetical protein; Provisional

Probab=99.05  E-value=2.8e-09  Score=96.51  Aligned_cols=103  Identities=19%  Similarity=0.289  Sum_probs=76.4

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      +++||||+|.||++++++|+++|++|++++|+.+..      .     ...+.++.+|+.+.  +.++   +.+.+  +|
T Consensus         2 kILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~------~-----~~~v~~v~gDL~D~--~~l~---~al~~--vD   63 (854)
T PRK05865          2 RIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS------W-----PSSADFIAADIRDA--TAVE---SAMTG--AD   63 (854)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh------c-----ccCceEEEeeCCCH--HHHH---HHHhC--CC
Confidence            599999999999999999999999999999975321      1     12356788999976  3333   33333  56


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKA  195 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~  195 (206)
                      ++||+|+...+               .+++|+.++.++++++    .+.+.++ +|++||.
T Consensus        64 ~VVHlAa~~~~---------------~~~vNv~GT~nLLeAa----~~~gvkr-~V~iSS~  104 (854)
T PRK05865         64 VVAHCAWVRGR---------------NDHINIDGTANVLKAM----AETGTGR-IVFTSSG  104 (854)
T ss_pred             EEEECCCcccc---------------hHHHHHHHHHHHHHHH----HHcCCCe-EEEECCc
Confidence            99999974321               3678999998887764    4455556 9999996

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=99.05  E-value=2.9e-09  Score=86.45  Aligned_cols=116  Identities=11%  Similarity=0.156  Sum_probs=77.3

Q ss_pred             EEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHH-hcCCCc
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEA-IEGLDV  133 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~i  133 (206)
                      ++||||+|.||.+++++|.++|+ .|++++|..... .. .++     ..  .....|+.+.  +..+.+.+. +.  ++
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~~-~~~-----~~--~~~~~d~~~~--~~~~~~~~~~~~--~~   67 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-KF-LNL-----AD--LVIADYIDKE--DFLDRLEKGAFG--KI   67 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-hh-hhh-----hh--eeeeccCcch--hHHHHHHhhccC--CC
Confidence            58999999999999999999998 688887754321 11 111     11  2234455443  444444432 23  46


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      |++||+||....        +.++.+..+++|+.++..+++++..    .+ .+ +|++||...+
T Consensus        68 D~vvh~A~~~~~--------~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~-~v~~SS~~vy  118 (314)
T TIGR02197        68 EAIFHQGACSDT--------TETDGEYMMENNYQYSKRLLDWCAE----KG-IP-FIYASSAATY  118 (314)
T ss_pred             CEEEECccccCc--------cccchHHHHHHHHHHHHHHHHHHHH----hC-Cc-EEEEccHHhc
Confidence            799999986432        1223467889999999999998753    23 35 9999997644

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=99.03  E-value=5.1e-10  Score=90.29  Aligned_cols=107  Identities=20%  Similarity=0.288  Sum_probs=72.7

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      +++||||+|-+|.++.+++.++|++++.++|+                       ++|+.|.  +.++++.+..   +||
T Consensus         2 riLI~GasG~lG~~l~~~l~~~~~~v~~~~r~-----------------------~~dl~d~--~~~~~~~~~~---~pd   53 (286)
T PF04321_consen    2 RILITGASGFLGSALARALKERGYEVIATSRS-----------------------DLDLTDP--EAVAKLLEAF---KPD   53 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTTSEEEEEESTT-----------------------CS-TTSH--HHHHHHHHHH-----S
T ss_pred             EEEEECCCCHHHHHHHHHHhhCCCEEEEeCch-----------------------hcCCCCH--HHHHHHHHHh---CCC
Confidence            68999999999999999999999999998776                       4677765  4444444433   477


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      ++||+||.....      .-.++-+..+++|+.++..+++.+..     ...+ +|++||...+.+.
T Consensus        54 ~Vin~aa~~~~~------~ce~~p~~a~~iN~~~~~~la~~~~~-----~~~~-li~~STd~VFdG~  108 (286)
T PF04321_consen   54 VVINCAAYTNVD------ACEKNPEEAYAINVDATKNLAEACKE-----RGAR-LIHISTDYVFDGD  108 (286)
T ss_dssp             EEEE------HH------HHHHSHHHHHHHHTHHHHHHHHHHHH-----CT-E-EEEEEEGGGS-SS
T ss_pred             eEeccceeecHH------hhhhChhhhHHHhhHHHHHHHHHHHH-----cCCc-EEEeeccEEEcCC
Confidence            999999987532      12233467899999999999999853     2234 9999997655444

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=99.02  E-value=1.5e-09  Score=87.81  Aligned_cols=105  Identities=15%  Similarity=0.189  Sum_probs=72.9

Q ss_pred             EEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCccEE
Q 028656           57 LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVL  136 (206)
Q Consensus        57 lItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id~l  136 (206)
                      +||||+|.||..++++|.+.|++|+++.+.                      ..+|+++.  +.++.+   +...++|++
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~----------------------~~~Dl~~~--~~l~~~---~~~~~~d~V   53 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH----------------------KELDLTRQ--ADVEAF---FAKEKPTYV   53 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCCcEEEeecc----------------------ccCCCCCH--HHHHHH---HhccCCCEE
Confidence            599999999999999999999988765432                      13677765  333333   333456799


Q ss_pred             EEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          137 INNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       137 vnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      ||+|+......     ...++.+..+++|+.++..+++++..    .+.++ +|++||...+
T Consensus        54 ih~A~~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~-~i~~SS~~vy  105 (306)
T PLN02725         54 ILAAAKVGGIH-----ANMTYPADFIRENLQIQTNVIDAAYR----HGVKK-LLFLGSSCIY  105 (306)
T ss_pred             EEeeeeecccc-----hhhhCcHHHHHHHhHHHHHHHHHHHH----cCCCe-EEEeCceeec
Confidence            99998753211     01112245688999999999999753    34456 9999997544

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=98.96  E-value=2.3e-09  Score=84.68  Aligned_cols=118  Identities=24%  Similarity=0.271  Sum_probs=72.1

Q ss_pred             EECCCChHHHHHHHHHHHCCC--cEEEEEcChhh---HHHHHHHHHHhc--------CCceEEEEEEecCCCc----hHH
Q 028656           58 VTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDK---LKDVSDSIQAKY--------AKTQIKSVVVDFSGDL----DEG  120 (206)
Q Consensus        58 ItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~---~~~~~~~~~~~~--------~~~~~~~~~~d~~~~~----~~~  120 (206)
                      ||||+|.+|..+.++|++.+.  +|+++.|..+.   .+++.+.+.+.+        ...++.++..|++++.    ++.
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            799999999999999999876  89999997633   333322222110        2678999999999853    233


Q ss_pred             HHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       121 ~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      .+.+.   .  ++|++||||+...-..         .+++..++|+.|+..+++.+..    .+..+ ++++||
T Consensus        81 ~~~L~---~--~v~~IiH~Aa~v~~~~---------~~~~~~~~NV~gt~~ll~la~~----~~~~~-~~~iST  135 (249)
T PF07993_consen   81 YQELA---E--EVDVIIHCAASVNFNA---------PYSELRAVNVDGTRNLLRLAAQ----GKRKR-FHYIST  135 (249)
T ss_dssp             HHHHH---H--H--EEEE--SS-SBS----------S--EEHHHHHHHHHHHHHHHTS----SS----EEEEEE
T ss_pred             hhccc---c--ccceeeecchhhhhcc---------cchhhhhhHHHHHHHHHHHHHh----ccCcc-eEEecc
Confidence            33332   2  3559999998764321         2355788999999999999863    22235 999999

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=98.96  E-value=4.7e-09  Score=83.38  Aligned_cols=106  Identities=17%  Similarity=0.260  Sum_probs=80.3

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCccE
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGV  135 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id~  135 (206)
                      ++|||++|-+|.++++.+. .+++|+.++|..                       +|++|.     +.+.+.+...+||+
T Consensus         3 iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~-----------------------~Ditd~-----~~v~~~i~~~~PDv   53 (281)
T COG1091           3 ILITGANGQLGTELRRALP-GEFEVIATDRAE-----------------------LDITDP-----DAVLEVIRETRPDV   53 (281)
T ss_pred             EEEEcCCChHHHHHHHHhC-CCceEEeccCcc-----------------------ccccCh-----HHHHHHHHhhCCCE
Confidence            8999999999999999999 778999888753                       688877     33333444446889


Q ss_pred             EEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          136 LINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       136 lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      +||+|+...-.      .-+.+-+..+.+|..|+.++++++-.      .|..+|.+|+-..+-+..
T Consensus        54 VIn~AAyt~vD------~aE~~~e~A~~vNa~~~~~lA~aa~~------~ga~lVhiSTDyVFDG~~  108 (281)
T COG1091          54 VINAAAYTAVD------KAESEPELAFAVNATGAENLARAAAE------VGARLVHISTDYVFDGEK  108 (281)
T ss_pred             EEECccccccc------cccCCHHHHHHhHHHHHHHHHHHHHH------hCCeEEEeecceEecCCC
Confidence            99999987542      12223477899999999999999853      344599999876655554

>PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function

Probab=98.96  E-value=2e-08  Score=80.47  Aligned_cols=147  Identities=16%  Similarity=0.203  Sum_probs=110.0

Q ss_pred             CcEEEEECC-CChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC--CchHHHHHHHHHhc
Q 028656           53 GSWALVTGP-TDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG--DLDEGVERIKEAIE  129 (206)
Q Consensus        53 ~k~vlItGa-s~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~  129 (206)
                      .++|+|.|. ..-+++.+|..|-++|+-|+++..+.++.+.+.++-     ...+.....|..+  +.+..+.++...+.
T Consensus         3 ~evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~ed~~~ve~e~-----~~dI~~L~ld~~~~~~~~~~l~~f~~~L~   77 (299)
T PF08643_consen    3 KEVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAEDEKYVESED-----RPDIRPLWLDDSDPSSIHASLSRFASLLS   77 (299)
T ss_pred             eeEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHHHHHHHHhcc-----CCCCCCcccCCCCCcchHHHHHHHHHHhc
Confidence            568999996 699999999999999999999999987655444332     3335666666643  44677777777765


Q ss_pred             CC------------CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC--CCCceEEEeccc
Q 028656          130 GL------------DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR--KKGLSMLNIGKA  195 (206)
Q Consensus       130 ~~------------~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~~iv~isS~  195 (206)
                      .-            .+..+|....... ..+|++..+.++|.+.++.|+.-++.++|.++|+++.+  ++.+-|++.-|.
T Consensus        78 ~p~~p~~~~~~h~l~L~svi~~Psl~y-p~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~~~~~~~iil~~Psi  156 (299)
T PF08643_consen   78 RPHVPFPGAPPHHLQLKSVIFIPSLSY-PTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSRSNQKSKIILFNPSI  156 (299)
T ss_pred             CCCCCCCCCCCceeEEEEEEEecCCCC-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEeCch
Confidence            32            3334555444444 34679999999999999999999999999999999872  244436666688


Q ss_pred             cccccccCCC
Q 028656          196 ELMCSVRFHY  205 (206)
Q Consensus       196 ~~~~~~~~~y  205 (206)
                      .+...+|+|-
T Consensus       157 ~ssl~~Pfhs  166 (299)
T PF08643_consen  157 SSSLNPPFHS  166 (299)
T ss_pred             hhccCCCccC
Confidence            8999999873

One of the proteins P32792 from SWISSPROT has been localised to the mitochondria [].

>PLN02503 fatty acyl-CoA reductase 2

Probab=98.95  E-value=2.1e-08  Score=88.06  Aligned_cols=131  Identities=19%  Similarity=0.234  Sum_probs=89.4

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC---cEEEEEcChhh---HHHHHHH---------HHHhcC-------CceEEE
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL---NLVLVGRNPDK---LKDVSDS---------IQAKYA-------KTQIKS  108 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~---~V~~~~r~~~~---~~~~~~~---------~~~~~~-------~~~~~~  108 (206)
                      ++||+++||||+|-+|..++++|++.+.   +|.++.|....   .+.+.++         +++..+       ..++.+
T Consensus       117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~  196 (605)
T PLN02503        117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP  196 (605)
T ss_pred             hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence            4799999999999999999999998653   68889886432   2222212         222222       357889


Q ss_pred             EEEecCCCc----hHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC
Q 028656          109 VVVDFSGDL----DEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK  184 (206)
Q Consensus       109 ~~~d~~~~~----~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~  184 (206)
                      +..|+++..    ++..+.+.   .  ++|++||+|+....     .    +..+..+++|+.|+.++++.+...   .+
T Consensus       197 v~GDl~d~~LGLs~~~~~~L~---~--~vDiVIH~AA~v~f-----~----~~~~~a~~vNV~GT~nLLelA~~~---~~  259 (605)
T PLN02503        197 VVGNVCESNLGLEPDLADEIA---K--EVDVIINSAANTTF-----D----ERYDVAIDINTRGPCHLMSFAKKC---KK  259 (605)
T ss_pred             EEeeCCCcccCCCHHHHHHHH---h--cCCEEEECcccccc-----c----cCHHHHHHHHHHHHHHHHHHHHHc---CC
Confidence            999999752    23333332   2  36699999987532     1    235678999999999999987542   22


Q ss_pred             CCceEEEeccccccc
Q 028656          185 KGLSMLNIGKAELMC  199 (206)
Q Consensus       185 ~g~~iv~isS~~~~~  199 (206)
                      ..+ +|++||.....
T Consensus       260 lk~-fV~vSTayVyG  273 (605)
T PLN02503        260 LKL-FLQVSTAYVNG  273 (605)
T ss_pred             CCe-EEEccCceeec
Confidence            344 99999976543

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=98.92  E-value=1.1e-08  Score=80.89  Aligned_cols=128  Identities=20%  Similarity=0.163  Sum_probs=90.6

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcCh--hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNP--DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      ++++||||+|.||.++++++.++..  +|+.+|.-.  ...+.+.. +.   .+.+..+++.|+.|.  +.+..+.+++ 
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~-~~---~~~~~~fv~~DI~D~--~~v~~~~~~~-   73 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLAD-VE---DSPRYRFVQGDICDR--ELVDRLFKEY-   73 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHh-hh---cCCCceEEeccccCH--HHHHHHHHhc-
Confidence            4689999999999999999998753  577777633  22333222 21   356889999999986  5555555443 


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                        ++|+++|-|+=++      .|-+.+.-+..+++|+.|++.+++++.....   ..+ ++.||.-..+..
T Consensus        74 --~~D~VvhfAAESH------VDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~---~fr-f~HISTDEVYG~  132 (340)
T COG1088          74 --QPDAVVHFAAESH------VDRSIDGPAPFIQTNVVGTYTLLEAARKYWG---KFR-FHHISTDEVYGD  132 (340)
T ss_pred             --CCCeEEEechhcc------ccccccChhhhhhcchHHHHHHHHHHHHhcc---cce-EEEecccccccc
Confidence              5779999887443      2445556677899999999999999866532   235 999998554433

>PLN02778 3,5-epimerase/4-reductase

Probab=98.92  E-value=1e-08  Score=83.24  Aligned_cols=92  Identities=15%  Similarity=0.143  Sum_probs=62.9

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      .++++||||+|.||+.++++|.++|++|+...++.                          .+.  +   .+...+...+
T Consensus         9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~--------------------------~~~--~---~v~~~l~~~~   57 (298)
T PLN02778          9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRL--------------------------ENR--A---SLEADIDAVK   57 (298)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCcc--------------------------CCH--H---HHHHHHHhcC
Confidence            46799999999999999999999999987532221                          111  1   1122222235


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhh
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLP  178 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~  178 (206)
                      +|++||+||......   .+...++-.+.+++|+.|+.++++++..
T Consensus        58 ~D~ViH~Aa~~~~~~---~~~~~~~p~~~~~~Nv~gt~~ll~aa~~  100 (298)
T PLN02778         58 PTHVFNAAGVTGRPN---VDWCESHKVETIRANVVGTLTLADVCRE  100 (298)
T ss_pred             CCEEEECCcccCCCC---chhhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence            779999999764311   1112233467899999999999999754

>PLN02996 fatty acyl-CoA reductase

Probab=98.91  E-value=3.4e-08  Score=85.35  Aligned_cols=131  Identities=19%  Similarity=0.197  Sum_probs=87.3

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCC---CcEEEEEcChhh---HHHHHHHH---------HHhcC-------CceEEE
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTG---LNLVLVGRNPDK---LKDVSDSI---------QAKYA-------KTQIKS  108 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g---~~V~~~~r~~~~---~~~~~~~~---------~~~~~-------~~~~~~  108 (206)
                      .+||+++||||+|.+|..++++|++.+   .+|+++.|....   .+.+..++         ++..+       ..++.+
T Consensus         9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~   88 (491)
T PLN02996          9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP   88 (491)
T ss_pred             hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence            579999999999999999999999764   368888886531   11211111         11111       257889


Q ss_pred             EEEecCCCc-----hHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC
Q 028656          109 VVVDFSGDL-----DEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR  183 (206)
Q Consensus       109 ~~~d~~~~~-----~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~  183 (206)
                      +..|+++..     .+..+.+.   .  ++|++||+|+....     .    +..+..+++|+.|+..+.+++...   .
T Consensus        89 i~GDl~~~~LGLs~~~~~~~l~---~--~vD~ViH~AA~v~~-----~----~~~~~~~~~Nv~gt~~ll~~a~~~---~  151 (491)
T PLN02996         89 VPGDISYDDLGVKDSNLREEMW---K--EIDIVVNLAATTNF-----D----ERYDVALGINTLGALNVLNFAKKC---V  151 (491)
T ss_pred             EecccCCcCCCCChHHHHHHHH---h--CCCEEEECccccCC-----c----CCHHHHHHHHHHHHHHHHHHHHhc---C
Confidence            999998531     12223332   3  35699999986542     1    134678999999999999987541   2


Q ss_pred             CCCceEEEeccccccc
Q 028656          184 KKGLSMLNIGKAELMC  199 (206)
Q Consensus       184 ~~g~~iv~isS~~~~~  199 (206)
                      +..+ +|++||...+.
T Consensus       152 ~~k~-~V~vST~~vyG  166 (491)
T PLN02996        152 KVKM-LLHVSTAYVCG  166 (491)
T ss_pred             CCCe-EEEEeeeEEec
Confidence            2345 99999977653

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=98.91  E-value=1.9e-08  Score=80.75  Aligned_cols=98  Identities=19%  Similarity=0.248  Sum_probs=65.9

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCccE
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGV  135 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id~  135 (206)
                      ++||||+|.||.+++++|+++|++|++++|+.+......        .  ....  |...      ....+.+.  ++|+
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~--~~~~--~~~~------~~~~~~~~--~~D~   60 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTK--------W--EGYK--PWAP------LAESEALE--GADA   60 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccc--------c--eeee--cccc------cchhhhcC--CCCE
Confidence            589999999999999999999999999999876532211        0  0111  1111      11122334  3669


Q ss_pred             EEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHh
Q 028656          136 LINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVL  177 (206)
Q Consensus       136 lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~  177 (206)
                      +||+||.....    .+.+.+..+..+++|+.++..+.+++.
T Consensus        61 Vvh~a~~~~~~----~~~~~~~~~~~~~~n~~~~~~l~~a~~   98 (292)
T TIGR01777        61 VINLAGEPIAD----KRWTEERKQEIRDSRIDTTRALVEAIA   98 (292)
T ss_pred             EEECCCCCccc----ccCCHHHHHHHHhcccHHHHHHHHHHH
Confidence            99999864321    123444556788999999988888864

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=98.86  E-value=6.6e-09  Score=80.96  Aligned_cols=100  Identities=15%  Similarity=0.104  Sum_probs=68.9

Q ss_pred             cEEEEECC-CChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhcC
Q 028656           54 SWALVTGP-TDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIEG  130 (206)
Q Consensus        54 k~vlItGa-s~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~  130 (206)
                      .+=.||.. +||||+++|++|+++|++|+++++...        +..  ..    ...+|+.+.  .++.++.+.+.+++
T Consensus        15 ~VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~--------l~~--~~----~~~~Dv~d~~s~~~l~~~v~~~~g~   80 (227)
T TIGR02114        15 SVRSITNHSTGHLGKIITETFLSAGHEVTLVTTKRA--------LKP--EP----HPNLSIREIETTKDLLITLKELVQE   80 (227)
T ss_pred             CceeecCCcccHHHHHHHHHHHHCCCEEEEEcChhh--------ccc--cc----CCcceeecHHHHHHHHHHHHHHcCC
Confidence            44456655 589999999999999999999886321        111  01    134677653  35556667777775


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHH
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ  174 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~  174 (206)
                        +|++|||||+...  .++.+.+.++|++++.   .+.+.+.+
T Consensus        81 --iDiLVnnAgv~d~--~~~~~~s~e~~~~~~~---~~~~~~~~  117 (227)
T TIGR02114        81 --HDILIHSMAVSDY--TPVYMTDLEQVQASDN---LNEFLSKQ  117 (227)
T ss_pred             --CCEEEECCEeccc--cchhhCCHHHHhhhcc---hhhhhccc
Confidence              5599999998754  4578889999997744   45555554

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=98.84  E-value=2.3e-08  Score=82.16  Aligned_cols=130  Identities=19%  Similarity=0.233  Sum_probs=90.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      ++.+++||||+|-+|++++++|.+++  .++.+.|..+....-..+....  ...++....+|+.+.     ..+...+.
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~--~~~~v~~~~~D~~~~-----~~i~~a~~   75 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF--RSGRVTVILGDLLDA-----NSISNAFQ   75 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc--cCCceeEEecchhhh-----hhhhhhcc
Confidence            46799999999999999999999998  6899888876421111111110  256677888888876     55555565


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      +  . .+||+|....+.   +..   .+-+.++++|+.|+.++..++.    +.+..+ +|++||.....+..
T Consensus        76 ~--~-~Vvh~aa~~~~~---~~~---~~~~~~~~vNV~gT~nvi~~c~----~~~v~~-lIYtSs~~Vvf~g~  134 (361)
T KOG1430|consen   76 G--A-VVVHCAASPVPD---FVE---NDRDLAMRVNVNGTLNVIEACK----ELGVKR-LIYTSSAYVVFGGE  134 (361)
T ss_pred             C--c-eEEEeccccCcc---ccc---cchhhheeecchhHHHHHHHHH----HhCCCE-EEEecCceEEeCCe
Confidence            4  3 566766544332   111   2347789999999998888864    456666 99999987766543

>PRK08309 short chain dehydrogenase; Provisional

Probab=98.81  E-value=5.7e-08  Score=72.83  Aligned_cols=83  Identities=22%  Similarity=0.308  Sum_probs=62.3

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcCCC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEGLD  132 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~  132 (206)
                      +++||||+ |+|.+++++|+++|++|++.+|+.++.+++...+..   ...+..+.+|++|..  .+.++.+.+.++.  
T Consensus         2 ~vlVtGGt-G~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~---~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~--   75 (177)
T PRK08309          2 HALVIGGT-GMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTT---PESITPLPLDYHDDDALKLAIKSTIEKNGP--   75 (177)
T ss_pred             EEEEECcC-HHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhc---CCcEEEEEccCCCHHHHHHHHHHHHHHcCC--
Confidence            68999998 888889999999999999999998877666554432   346778889999852  4555556555564  


Q ss_pred             ccEEEEecccc
Q 028656          133 VGVLINNVGIS  143 (206)
Q Consensus       133 id~lvnnAg~~  143 (206)
                      +|++|+.+-..
T Consensus        76 id~lv~~vh~~   86 (177)
T PRK08309         76 FDLAVAWIHSS   86 (177)
T ss_pred             CeEEEEecccc
Confidence            55888876543

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.79  E-value=1.1e-07  Score=77.71  Aligned_cols=134  Identities=16%  Similarity=0.185  Sum_probs=90.2

Q ss_pred             cEEEEECCCChHHHHHHHHHHHC-CCcEEEEEcChh---hHHHHHHHHH-----HhcCCceEEEEEEecCCCchHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNPD---KLKDVSDSIQ-----AKYAKTQIKSVVVDFSGDLDEGVERI  124 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~~---~~~~~~~~~~-----~~~~~~~~~~~~~d~~~~~~~~~~~~  124 (206)
                      +++++|||+|-+|.-+.++|..+ .++|++.-|-.+   ..+++.+.+.     +.....++.++..|++...-..-+.-
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~   80 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT   80 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence            57999999999999999998865 569999988543   2333433333     11246889999999996431111222


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      ...+.+ .+|.++||++...--         ..+.+....|+.|+..+.+.+.     .++++.+.+|||.+..-...
T Consensus        81 ~~~La~-~vD~I~H~gA~Vn~v---------~pYs~L~~~NVlGT~evlrLa~-----~gk~Kp~~yVSsisv~~~~~  143 (382)
T COG3320          81 WQELAE-NVDLIIHNAALVNHV---------FPYSELRGANVLGTAEVLRLAA-----TGKPKPLHYVSSISVGETEY  143 (382)
T ss_pred             HHHHhh-hcceEEecchhhccc---------CcHHHhcCcchHhHHHHHHHHh-----cCCCceeEEEeeeeeccccc
Confidence            223332 366999999876421         1136677889999999999874     34444599999987654443

>PRK12320 hypothetical protein; Provisional

Probab=98.77  E-value=9.3e-08  Score=85.14  Aligned_cols=104  Identities=18%  Similarity=0.234  Sum_probs=75.1

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      +++||||+|.||++++++|.++|++|++++|+....           ....+.++.+|+.+.  .    +.+.+.+  +|
T Consensus         2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~-----------~~~~ve~v~~Dl~d~--~----l~~al~~--~D   62 (699)
T PRK12320          2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA-----------LDPRVDYVCASLRNP--V----LQELAGE--AD   62 (699)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc-----------ccCCceEEEccCCCH--H----HHHHhcC--CC
Confidence            599999999999999999999999999999875321           123467788898865  2    2233343  56


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAEL  197 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~  197 (206)
                      ++||+|+....      +        ..++|+.|+.++++++..    .+ .+ +|++||..|
T Consensus        63 ~VIHLAa~~~~------~--------~~~vNv~Gt~nLleAA~~----~G-vR-iV~~SS~~G  105 (699)
T PRK12320         63 AVIHLAPVDTS------A--------PGGVGITGLAHVANAAAR----AG-AR-LLFVSQAAG  105 (699)
T ss_pred             EEEEcCccCcc------c--------hhhHHHHHHHHHHHHHHH----cC-Ce-EEEEECCCC
Confidence            99999975321      0        124799999999988742    33 35 999998743

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=98.72  E-value=5.4e-08  Score=81.70  Aligned_cols=80  Identities=18%  Similarity=0.251  Sum_probs=58.2

Q ss_pred             ccCCcEEEEECC---------------C-ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEec
Q 028656           50 RKYGSWALVTGP---------------T-DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF  113 (206)
Q Consensus        50 ~~~~k~vlItGa---------------s-~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~  113 (206)
                      +++||+++||||               | |++|.++|++++++|++|++++++.+ ++       .  +. .  ...+|+
T Consensus       185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~-~~-------~--~~-~--~~~~dv  251 (399)
T PRK05579        185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN-LP-------T--PA-G--VKRIDV  251 (399)
T ss_pred             ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc-cc-------C--CC-C--cEEEcc
Confidence            357999999999               4 44999999999999999999998763 11       0  11 1  235677


Q ss_pred             CCCchHHHHHHHHHhcCCCccEEEEeccccCC
Q 028656          114 SGDLDEGVERIKEAIEGLDVGVLINNVGISYP  145 (206)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~id~lvnnAg~~~~  145 (206)
                      ++. ++..+.+.+.+++  +|++|||||+...
T Consensus       252 ~~~-~~~~~~v~~~~~~--~DilI~~Aav~d~  280 (399)
T PRK05579        252 ESA-QEMLDAVLAALPQ--ADIFIMAAAVADY  280 (399)
T ss_pred             CCH-HHHHHHHHHhcCC--CCEEEEccccccc
Confidence            753 3455666666775  5599999998753

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=98.70  E-value=1.6e-07  Score=75.88  Aligned_cols=85  Identities=18%  Similarity=0.299  Sum_probs=60.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCc-EEEEEcCh---hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLN-LVLVGRNP---DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIK  125 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~-V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  125 (206)
                      ..++|+++|+|| ||+|++++..|++.|++ |.+++|+.   ++.+++.+++.+.++  ......+|..+.     +.+.
T Consensus       123 ~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~--~~~~~~~d~~~~-----~~~~  194 (289)
T PRK12548        123 DVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVP--ECIVNVYDLNDT-----EKLK  194 (289)
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCC--CceeEEechhhh-----hHHH
Confidence            456899999999 69999999999999996 99999997   677777777755432  233445566543     2222


Q ss_pred             HHhcCCCccEEEEeccccC
Q 028656          126 EAIEGLDVGVLINNVGISY  144 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~  144 (206)
                      +.+..  .|++|||..+..
T Consensus       195 ~~~~~--~DilINaTp~Gm  211 (289)
T PRK12548        195 AEIAS--SDILVNATLVGM  211 (289)
T ss_pred             hhhcc--CCEEEEeCCCCC
Confidence            33333  359999986553

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=98.65  E-value=1.9e-07  Score=72.84  Aligned_cols=100  Identities=18%  Similarity=0.175  Sum_probs=67.3

Q ss_pred             cEEEEECCCCh-HHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           54 SWALVTGPTDG-IGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        54 k~vlItGas~g-iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      .+-.||+.|+| +|+++|++|+++|++|++++|+....        .. +...+..+.++.   .++..+.+.+.+++  
T Consensus        16 ~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~--------~~-~~~~v~~i~v~s---~~~m~~~l~~~~~~--   81 (229)
T PRK06732         16 SVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVK--------PE-PHPNLSIIEIEN---VDDLLETLEPLVKD--   81 (229)
T ss_pred             CceeecCccchHHHHHHHHHHHhCCCEEEEEECccccc--------CC-CCCCeEEEEEec---HHHHHHHHHHHhcC--
Confidence            46778877765 99999999999999999998764210        00 112334444432   23444555555664  


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHH
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGT  169 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~  169 (206)
                      +|++|||||+...  .+....+.+++.+++++|....
T Consensus        82 ~DivIh~AAvsd~--~~~~~~~~~~~~~~~~v~~~~~  116 (229)
T PRK06732         82 HDVLIHSMAVSDY--TPVYMTDLEEVSASDNLNEFLT  116 (229)
T ss_pred             CCEEEeCCccCCc--eehhhhhhhhhhhhhhhhhhhc
Confidence            5599999998753  2355677888899988877654

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.64  E-value=3.7e-07  Score=69.49  Aligned_cols=84  Identities=31%  Similarity=0.424  Sum_probs=60.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      .++++++++|.||+|++|+++++.++++|++|++++|+.++.+++.+++.+.. +..  ...+|..+.     +...+.+
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~-~~~--~~~~~~~~~-----~~~~~~~   95 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARF-GEG--VGAVETSDD-----AARAAAI   95 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhc-CCc--EEEeeCCCH-----HHHHHHH
Confidence            35679999999999999999999999999999999999998888887775432 222  334555543     2233334


Q ss_pred             cCCCccEEEEeccc
Q 028656          129 EGLDVGVLINNVGI  142 (206)
Q Consensus       129 ~~~~id~lvnnAg~  142 (206)
                      .+.|  ++|++...
T Consensus        96 ~~~d--iVi~at~~  107 (194)
T cd01078          96 KGAD--VVFAAGAA  107 (194)
T ss_pred             hcCC--EEEECCCC
Confidence            4434  78886543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.61  E-value=3.1e-07  Score=82.39  Aligned_cols=104  Identities=17%  Similarity=0.133  Sum_probs=69.5

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      .++++||||+|-||++++++|.++|++|...                          ..|++|.  +.++.   .+...+
T Consensus       380 ~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~--------------------------~~~l~d~--~~v~~---~i~~~~  428 (668)
T PLN02260        380 SLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG--------------------------KGRLEDR--SSLLA---DIRNVK  428 (668)
T ss_pred             CceEEEECCCchHHHHHHHHHHhCCCeEEee--------------------------ccccccH--HHHHH---HHHhhC
Confidence            4579999999999999999999999887311                          0133433  22222   233345


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE  196 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~  196 (206)
                      +|++||+|+......   .+...++-++.+++|+.|+.++++++..    .+. + ++++||..
T Consensus       429 pd~Vih~Aa~~~~~~---~~~~~~~~~~~~~~N~~gt~~l~~a~~~----~g~-~-~v~~Ss~~  483 (668)
T PLN02260        429 PTHVFNAAGVTGRPN---VDWCESHKVETIRANVVGTLTLADVCRE----NGL-L-MMNFATGC  483 (668)
T ss_pred             CCEEEECCcccCCCC---CChHHhCHHHHHHHHhHHHHHHHHHHHH----cCC-e-EEEEcccc
Confidence            789999999764311   1222334578899999999999999854    232 3 66666643

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=98.57  E-value=3.1e-07  Score=73.79  Aligned_cols=107  Identities=10%  Similarity=0.050  Sum_probs=67.0

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC-C-
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL-D-  132 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~-  132 (206)
                      +++||||+|.+|+.++++|.++|++|.+++|++++...         .  .+..+.+|..|.  +.++...+..... . 
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~---------~--~~~~~~~d~~d~--~~l~~a~~~~~~~~g~   67 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG---------P--NEKHVKFDWLDE--DTWDNPFSSDDGMEPE   67 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC---------C--CCccccccCCCH--HHHHHHHhcccCcCCc
Confidence            37999999999999999999999999999999865321         1  233456788775  3333333211111 2 


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      +|.++++++....      +     .+            ..+.++...++.+..+ ||++||....
T Consensus        68 ~d~v~~~~~~~~~------~-----~~------------~~~~~i~aa~~~gv~~-~V~~Ss~~~~  109 (285)
T TIGR03649        68 ISAVYLVAPPIPD------L-----AP------------PMIKFIDFARSKGVRR-FVLLSASIIE  109 (285)
T ss_pred             eeEEEEeCCCCCC------h-----hH------------HHHHHHHHHHHcCCCE-EEEeeccccC
Confidence            5688887653210      0     01            1122334455566666 9999986543

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=98.53  E-value=1.4e-06  Score=68.61  Aligned_cols=116  Identities=19%  Similarity=0.237  Sum_probs=71.9

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCccE
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGV  135 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id~  135 (206)
                      ++||||+|-||++++.+|.+.|++|+++.|++.+.+...        ...+.            ..+.+.+... .++|+
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~--------~~~v~------------~~~~~~~~~~-~~~Da   59 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNL--------HPNVT------------LWEGLADALT-LGIDA   59 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhc--------Ccccc------------ccchhhhccc-CCCCE
Confidence            589999999999999999999999999999987644211        11110            0011111111 14679


Q ss_pred             EEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccc
Q 028656          136 LINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSV  201 (206)
Q Consensus       136 lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~  201 (206)
                      +||-||-.-..    ..++.+.=+++++.-+.    .++.+.....+.+ ++. +..=+|..|+++.
T Consensus        60 vINLAG~~I~~----rrWt~~~K~~i~~SRi~----~T~~L~e~I~~~~~~P~-~~isaSAvGyYG~  117 (297)
T COG1090          60 VINLAGEPIAE----RRWTEKQKEEIRQSRIN----TTEKLVELIAASETKPK-VLISASAVGYYGH  117 (297)
T ss_pred             EEECCCCcccc----ccCCHHHHHHHHHHHhH----HHHHHHHHHHhccCCCc-EEEecceEEEecC
Confidence            99999965432    13566666666664444    4455544444333 344 6666666677664

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=98.50  E-value=2.1e-06  Score=82.85  Aligned_cols=128  Identities=18%  Similarity=0.134  Sum_probs=84.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCC----CcEEEEEcChhhHH---HHHHHHHHhc-----CCceEEEEEEecCCCc--
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTG----LNLVLVGRNPDKLK---DVSDSIQAKY-----AKTQIKSVVVDFSGDL--  117 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g----~~V~~~~r~~~~~~---~~~~~~~~~~-----~~~~~~~~~~d~~~~~--  117 (206)
                      ..++++||||+|.+|..++++|++++    .+|+++.|+.....   .+.+.....+     ...++.++..|+++..  
T Consensus       970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443       970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred             CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence            35899999999999999999999887    78999999754322   2222221110     1236788899988642  


Q ss_pred             --hHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccc
Q 028656          118 --DEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKA  195 (206)
Q Consensus       118 --~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~  195 (206)
                        ++..+.+   ..  ++|++||||+....      ..+   +......|+.|+..+++.+..    .+..+ ++++||.
T Consensus      1050 l~~~~~~~l---~~--~~d~iiH~Aa~~~~------~~~---~~~~~~~nv~gt~~ll~~a~~----~~~~~-~v~vSS~ 1110 (1389)
T TIGR03443      1050 LSDEKWSDL---TN--EVDVIIHNGALVHW------VYP---YSKLRDANVIGTINVLNLCAE----GKAKQ-FSFVSST 1110 (1389)
T ss_pred             cCHHHHHHH---Hh--cCCEEEECCcEecC------ccC---HHHHHHhHHHHHHHHHHHHHh----CCCce-EEEEeCe
Confidence              2222222   23  35699999986532      112   233456799999999998743    33345 9999997


Q ss_pred             ccc
Q 028656          196 ELM  198 (206)
Q Consensus       196 ~~~  198 (206)
                      +.+
T Consensus      1111 ~v~ 1113 (1389)
T TIGR03443      1111 SAL 1113 (1389)
T ss_pred             eec
Confidence            654

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PLN00016 RNA-binding protein; Provisional

Probab=98.49  E-value=1.1e-06  Score=73.59  Aligned_cols=109  Identities=19%  Similarity=0.177  Sum_probs=69.3

Q ss_pred             CCcEEEEE----CCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH-------HHHHHhcCCceEEEEEEecCCCchHH
Q 028656           52 YGSWALVT----GPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS-------DSIQAKYAKTQIKSVVVDFSGDLDEG  120 (206)
Q Consensus        52 ~~k~vlIt----Gas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~~~  120 (206)
                      ..++++||    ||+|.||..++++|+++|++|++++|+........       .++.    ...+..+.+|..+     
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~----~~~v~~v~~D~~d-----  121 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELS----SAGVKTVWGDPAD-----  121 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhh----hcCceEEEecHHH-----
Confidence            45789999    99999999999999999999999999875432211       1111    1125667777764     


Q ss_pred             HHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       121 ~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      .+.+   +...++|++||++|..           .+           ++-.++++    ..+.+..+ +|++||...+.
T Consensus       122 ~~~~---~~~~~~d~Vi~~~~~~-----------~~-----------~~~~ll~a----a~~~gvkr-~V~~SS~~vyg  170 (378)
T PLN00016        122 VKSK---VAGAGFDVVYDNNGKD-----------LD-----------EVEPVADW----AKSPGLKQ-FLFCSSAGVYK  170 (378)
T ss_pred             HHhh---hccCCccEEEeCCCCC-----------HH-----------HHHHHHHH----HHHcCCCE-EEEEccHhhcC
Confidence            1222   2222466999986520           11           12223333    44455566 99999976543

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=98.49  E-value=2.2e-07  Score=77.74  Aligned_cols=79  Identities=20%  Similarity=0.271  Sum_probs=55.6

Q ss_pred             cCCcEEEEECC---------------CCh-HHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecC
Q 028656           51 KYGSWALVTGP---------------TDG-IGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS  114 (206)
Q Consensus        51 ~~~k~vlItGa---------------s~g-iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  114 (206)
                      ++||+++||||               ||| +|.++|+++.++|++|++++++.+..           ....+  ..+|++
T Consensus       183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~-----------~~~~~--~~~~v~  249 (390)
T TIGR00521       183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL-----------TPPGV--KSIKVS  249 (390)
T ss_pred             cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC-----------CCCCc--EEEEec
Confidence            67999999999               667 99999999999999999988765321           11112  345666


Q ss_pred             CCchHHHHHHH-HHhcCCCccEEEEeccccCC
Q 028656          115 GDLDEGVERIK-EAIEGLDVGVLINNVGISYP  145 (206)
Q Consensus       115 ~~~~~~~~~~~-~~~~~~~id~lvnnAg~~~~  145 (206)
                      +. ++..+.+. +.++  +.|++|||||+...
T Consensus       250 ~~-~~~~~~~~~~~~~--~~D~~i~~Aavsd~  278 (390)
T TIGR00521       250 TA-EEMLEAALNELAK--DFDIFISAAAVADF  278 (390)
T ss_pred             cH-HHHHHHHHHhhcc--cCCEEEEccccccc
Confidence            53 23324444 3334  35699999999754

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.34  E-value=4.6e-06  Score=59.79  Aligned_cols=78  Identities=22%  Similarity=0.450  Sum_probs=57.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCc-EEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLN-LVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      ++++++++|.|+ ||.|+++++.|+++|++ |.++.|+.++.+++.+++    ++..+..+..+  +        +.+..
T Consensus         9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~~~--~--------~~~~~   73 (135)
T PF01488_consen    9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEF----GGVNIEAIPLE--D--------LEEAL   73 (135)
T ss_dssp             TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH----TGCSEEEEEGG--G--------HCHHH
T ss_pred             CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc----CccccceeeHH--H--------HHHHH
Confidence            477999999998 79999999999999986 999999999999888887    22334444322  1        11333


Q ss_pred             cCCCccEEEEeccccC
Q 028656          129 EGLDVGVLINNVGISY  144 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~  144 (206)
                      ++  .|++||+.+...
T Consensus        74 ~~--~DivI~aT~~~~   87 (135)
T PF01488_consen   74 QE--ADIVINATPSGM   87 (135)
T ss_dssp             HT--ESEEEE-SSTTS
T ss_pred             hh--CCeEEEecCCCC
Confidence            43  459999987654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=98.27  E-value=2.9e-06  Score=67.06  Aligned_cols=123  Identities=15%  Similarity=0.128  Sum_probs=81.7

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      +...+.+++||||+|.||.++|..|..+|+.|+++|.-........+.+-   ....+..+.-|+...       +.   
T Consensus        23 ~p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~---~~~~fel~~hdv~~p-------l~---   89 (350)
T KOG1429|consen   23 KPSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWI---GHPNFELIRHDVVEP-------LL---   89 (350)
T ss_pred             cCCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhc---cCcceeEEEeechhH-------HH---
Confidence            44678999999999999999999999999999999976544332222221   234444555555432       21   


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      .  .+|.++|-|..+.+..  +.--+    -+++.+|.+++..+...+.+     -..+ ++..|+...+
T Consensus        90 ~--evD~IyhLAapasp~~--y~~np----vktIktN~igtln~lglakr-----v~aR-~l~aSTseVY  145 (350)
T KOG1429|consen   90 K--EVDQIYHLAAPASPPH--YKYNP----VKTIKTNVIGTLNMLGLAKR-----VGAR-FLLASTSEVY  145 (350)
T ss_pred             H--HhhhhhhhccCCCCcc--cccCc----cceeeecchhhHHHHHHHHH-----hCce-EEEeeccccc
Confidence            1  1347888887776532  21112    45689999999999988754     2234 8887775544

>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]

Probab=98.26  E-value=1.7e-05  Score=67.37  Aligned_cols=133  Identities=18%  Similarity=0.185  Sum_probs=87.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCC---CcEEEEEcCh---h---hHH-----HHHHHHHHhcCC--ceEEEEEEecC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTG---LNLVLVGRNP---D---KLK-----DVSDSIQAKYAK--TQIKSVVVDFS  114 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g---~~V~~~~r~~---~---~~~-----~~~~~~~~~~~~--~~~~~~~~d~~  114 (206)
                      ++||+++||||+|.+|+-+...+++.-   -++.++-|..   +   +++     .+-+.+++..++  .++..+..|++
T Consensus        10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~   89 (467)
T KOG1221|consen   10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS   89 (467)
T ss_pred             hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence            579999999999999999999999753   2777777753   1   111     222333333232  67888889998


Q ss_pred             CCchHHH-HHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEec
Q 028656          115 GDLDEGV-ERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG  193 (206)
Q Consensus       115 ~~~~~~~-~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~is  193 (206)
                      ++....- .....-..  .+++++|+|+...-         .|.++..+.+|..|+..+.+.+....    .-..++.+|
T Consensus        90 ~~~LGis~~D~~~l~~--eV~ivih~AAtvrF---------de~l~~al~iNt~Gt~~~l~lak~~~----~l~~~vhVS  154 (467)
T KOG1221|consen   90 EPDLGISESDLRTLAD--EVNIVIHSAATVRF---------DEPLDVALGINTRGTRNVLQLAKEMV----KLKALVHVS  154 (467)
T ss_pred             CcccCCChHHHHHHHh--cCCEEEEeeeeecc---------chhhhhhhhhhhHhHHHHHHHHHHhh----hhheEEEee
Confidence            6531111 11112223  35599999987642         13457789999999999999886532    222488888


Q ss_pred             ccccc
Q 028656          194 KAELM  198 (206)
Q Consensus       194 S~~~~  198 (206)
                      ...+.
T Consensus       155 TAy~n  159 (467)
T KOG1221|consen  155 TAYSN  159 (467)
T ss_pred             hhhee
Confidence            86655

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=98.25  E-value=3.9e-06  Score=77.04  Aligned_cols=144  Identities=15%  Similarity=0.133  Sum_probs=102.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHH---HHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLK---DVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      ..|.++|+||-||+|.+++..|.++|+ ++++++|+.-+..   ...+.++..  +.++.+-..|++..  +-+.++.+.
T Consensus      1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~--GVqV~vsT~nitt~--~ga~~Li~~ 1842 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRR--GVQVQVSTSNITTA--EGARGLIEE 1842 (2376)
T ss_pred             ccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhc--CeEEEEecccchhh--hhHHHHHHH
Confidence            468999999999999999999999998 6888999864422   233445553  44444444455433  233444444


Q ss_pred             hcCC-CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~-~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      -... .+..++|-|.+..++.  +++.+++.|++.-+..+.|+.++-+.--..-  ..-.. +|..||.+.-.+..++
T Consensus      1843 s~kl~~vGGiFnLA~VLRD~L--iEnQt~knFk~va~pK~~~Ti~LD~~sRe~C--~~Ldy-Fv~FSSvscGRGN~GQ 1915 (2376)
T KOG1202|consen 1843 SNKLGPVGGIFNLAAVLRDGL--IENQTPKNFKDVAKPKYSGTINLDRVSREIC--PELDY-FVVFSSVSCGRGNAGQ 1915 (2376)
T ss_pred             hhhcccccchhhHHHHHHhhh--hcccChhHHHhhhccceeeeeehhhhhhhhC--cccce-EEEEEeecccCCCCcc
Confidence            3332 3458999999998865  9999999999999999999998876643321  12356 9999999887777654

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.23  E-value=8.7e-06  Score=67.80  Aligned_cols=77  Identities=22%  Similarity=0.365  Sum_probs=61.1

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCC-CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      +.++|.|+ |++|+.+|+.|+++| .+|.+.+|+.+++.++.+..     ..++...++|+.+.     +.+.+.+.+. 
T Consensus         2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~-----~~~v~~~~vD~~d~-----~al~~li~~~-   69 (389)
T COG1748           2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI-----GGKVEALQVDAADV-----DALVALIKDF-   69 (389)
T ss_pred             CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc-----cccceeEEecccCh-----HHHHHHHhcC-
Confidence            46888898 999999999999999 89999999999888776553     33788999999987     4444444543 


Q ss_pred             ccEEEEecccc
Q 028656          133 VGVLINNVGIS  143 (206)
Q Consensus       133 id~lvnnAg~~  143 (206)
                       |++||++...
T Consensus        70 -d~VIn~~p~~   79 (389)
T COG1748          70 -DLVINAAPPF   79 (389)
T ss_pred             -CEEEEeCCch
Confidence             4899988654

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.21  E-value=2.2e-05  Score=62.28  Aligned_cols=74  Identities=22%  Similarity=0.294  Sum_probs=57.5

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      .++||||+|.+|++++++|.++|++|....|+.++.....         ..+.+...|+.+.     +.+...+.+.+  
T Consensus         2 ~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~---------~~v~~~~~d~~~~-----~~l~~a~~G~~--   65 (275)
T COG0702           2 KILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA---------GGVEVVLGDLRDP-----KSLVAGAKGVD--   65 (275)
T ss_pred             eEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc---------CCcEEEEeccCCH-----hHHHHHhcccc--
Confidence            6899999999999999999999999999999998876543         3466777788876     45555556544  


Q ss_pred             EEEEeccccC
Q 028656          135 VLINNVGISY  144 (206)
Q Consensus       135 ~lvnnAg~~~  144 (206)
                      .+++..+...
T Consensus        66 ~~~~i~~~~~   75 (275)
T COG0702          66 GVLLISGLLD   75 (275)
T ss_pred             EEEEEecccc
Confidence            7777666543

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=98.21  E-value=3.5e-06  Score=66.60  Aligned_cols=129  Identities=19%  Similarity=0.176  Sum_probs=88.4

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHH--hcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQA--KYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +|+++|||-+|-=|.=+|+.|.++|+.|..+.|.......-.-.+..  .-.+.+++...+|++|.  ..+.++.+   .
T Consensus         2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~--~~l~r~l~---~   76 (345)
T COG1089           2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDS--SNLLRILE---E   76 (345)
T ss_pred             CceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccch--HHHHHHHH---h
Confidence            68999999999999999999999999999998864321111001111  11356789999999997  44444443   4


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKA  195 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~  195 (206)
                      .+||-+.|-|+-+.-      ..|-|+...+.+++..|+.+++.+.--  ...+.-+ +..-||.
T Consensus        77 v~PdEIYNLaAQS~V------~vSFe~P~~T~~~~~iGtlrlLEaiR~--~~~~~~r-fYQAStS  132 (345)
T COG1089          77 VQPDEIYNLAAQSHV------GVSFEQPEYTADVDAIGTLRLLEAIRI--LGEKKTR-FYQASTS  132 (345)
T ss_pred             cCchhheeccccccc------cccccCcceeeeechhHHHHHHHHHHH--hCCcccE-EEecccH
Confidence            457788888876543      334444577899999999999988632  2222233 7777664

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.13  E-value=1.3e-05  Score=65.83  Aligned_cols=48  Identities=25%  Similarity=0.401  Sum_probs=41.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHC-C-CcEEEEEcChhhHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKT-G-LNLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~-g-~~V~~~~r~~~~~~~~~~~~   97 (206)
                      ++++|+++||||+|.||+.+|++|+++ | .++++++|+.++++++.+++
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el  201 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAEL  201 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHh
Confidence            467999999999999999999999864 5 48999999988887776654

>PRK09620 hypothetical protein; Provisional

Probab=98.12  E-value=5.7e-06  Score=64.53  Aligned_cols=83  Identities=17%  Similarity=0.165  Sum_probs=53.2

Q ss_pred             cCCcEEEEECCC----------------ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecC
Q 028656           51 KYGSWALVTGPT----------------DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS  114 (206)
Q Consensus        51 ~~~k~vlItGas----------------~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  114 (206)
                      ++||+|+||+|.                |-+|.++|+++.++|++|+++++.......   ..   ..+.....+..   
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~---~~---~~~~~~~~V~s---   71 (229)
T PRK09620          1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPN---DI---NNQLELHPFEG---   71 (229)
T ss_pred             CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCc---cc---CCceeEEEEec---
Confidence            368999999886                999999999999999999998864321110   00   00122222222   


Q ss_pred             CCchHHHHHHHHHhcCCCccEEEEeccccC
Q 028656          115 GDLDEGVERIKEAIEGLDVGVLINNVGISY  144 (206)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~id~lvnnAg~~~  144 (206)
                        ..+..+.+.+.+...++|++||+|+++.
T Consensus        72 --~~d~~~~l~~~~~~~~~D~VIH~AAvsD   99 (229)
T PRK09620         72 --IIDLQDKMKSIITHEKVDAVIMAAAGSD   99 (229)
T ss_pred             --HHHHHHHHHHHhcccCCCEEEECccccc
Confidence              1122245555555445779999999864

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.09  E-value=1.9e-05  Score=67.68  Aligned_cols=78  Identities=23%  Similarity=0.367  Sum_probs=56.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh-hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      ++++|+++|+|+++ +|.++|+.|+++|++|.+.+++. +.+++..+++.+.  +  +..+..|..+.          ..
T Consensus         2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~--~--~~~~~~~~~~~----------~~   66 (450)
T PRK14106          2 ELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL--G--IELVLGEYPEE----------FL   66 (450)
T ss_pred             CcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc--C--CEEEeCCcchh----------Hh
Confidence            35689999999887 99999999999999999999985 4455555555432  2  33455555531          22


Q ss_pred             cCCCccEEEEeccccC
Q 028656          129 EGLDVGVLINNVGISY  144 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~  144 (206)
                      +  ++|++|+++|+..
T Consensus        67 ~--~~d~vv~~~g~~~   80 (450)
T PRK14106         67 E--GVDLVVVSPGVPL   80 (450)
T ss_pred             h--cCCEEEECCCCCC
Confidence            3  3569999999754

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.06  E-value=2.1e-05  Score=66.11  Aligned_cols=76  Identities=30%  Similarity=0.517  Sum_probs=55.5

Q ss_pred             EEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      |+|.|| |.+|+.+++.|++++-  +|++.+|+.++++++.+++    ...++....+|+.|.     +.+.+.+.+.| 
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~----~~~~~~~~~~d~~~~-----~~l~~~~~~~d-   69 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL----LGDRVEAVQVDVNDP-----ESLAELLRGCD-   69 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT------TTTTEEEEE--TTTH-----HHHHHHHTTSS-
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc----cccceeEEEEecCCH-----HHHHHHHhcCC-
Confidence            689999 9999999999999864  8999999999988887765    356789999999876     33444455544 


Q ss_pred             cEEEEecccc
Q 028656          134 GVLINNVGIS  143 (206)
Q Consensus       134 d~lvnnAg~~  143 (206)
                       ++||++|-.
T Consensus        70 -vVin~~gp~   78 (386)
T PF03435_consen   70 -VVINCAGPF   78 (386)
T ss_dssp             -EEEE-SSGG
T ss_pred             -EEEECCccc
Confidence             999999854

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=98.02  E-value=5.7e-05  Score=60.74  Aligned_cols=49  Identities=18%  Similarity=0.387  Sum_probs=43.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCC-CcEEEEEcChhhHHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDSIQA   99 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~~~~   99 (206)
                      ++++|+++|+|+ ||+|+++++.|+..| .+|.+++|+.++.+++.+++..
T Consensus       120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~  169 (278)
T PRK00258        120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA  169 (278)
T ss_pred             CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh
Confidence            467899999997 899999999999999 6999999999998888777643

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=98.01  E-value=3.1e-05  Score=57.28  Aligned_cols=129  Identities=21%  Similarity=0.197  Sum_probs=83.9

Q ss_pred             CcccccCCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHH
Q 028656           46 AKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVER  123 (206)
Q Consensus        46 ~~~~~~~~k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  123 (206)
                      +++++++++.++|.||+|-.|..+.+++++.+-  +|+++.|.+..-++         .+..+.....|...     .++
T Consensus        11 rEDf~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~a---------t~k~v~q~~vDf~K-----l~~   76 (238)
T KOG4039|consen   11 REDFRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPA---------TDKVVAQVEVDFSK-----LSQ   76 (238)
T ss_pred             HHHHhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcc---------ccceeeeEEechHH-----HHH
Confidence            356888899999999999999999999999874  89999987522111         13344555555442     234


Q ss_pred             HHHHhcCCCccEEEEeccccCCccc--ccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYAR--FFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~--~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      ..+...+  +|+++.+-|......+  -|...+.+           =.+..++++    +..+... +|.+||..+..+.
T Consensus        77 ~a~~~qg--~dV~FcaLgTTRgkaGadgfykvDhD-----------yvl~~A~~A----Ke~Gck~-fvLvSS~GAd~sS  138 (238)
T KOG4039|consen   77 LATNEQG--PDVLFCALGTTRGKAGADGFYKVDHD-----------YVLQLAQAA----KEKGCKT-FVLVSSAGADPSS  138 (238)
T ss_pred             HHhhhcC--CceEEEeecccccccccCceEeechH-----------HHHHHHHHH----HhCCCeE-EEEEeccCCCccc
Confidence            4444444  5599999888764221  13333322           112233332    3345555 9999999999888


Q ss_pred             cCCCC
Q 028656          202 RFHYM  206 (206)
Q Consensus       202 ~~~y~  206 (206)
                      .+.|+
T Consensus       139 rFlY~  143 (238)
T KOG4039|consen  139 RFLYM  143 (238)
T ss_pred             ceeee
Confidence            88885

>PTZ00325 malate dehydrogenase; Provisional

Probab=97.99  E-value=0.0001  Score=60.35  Aligned_cols=120  Identities=15%  Similarity=0.167  Sum_probs=73.3

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      .+.+++.|+|++|.+|..++..++.++  .+++++|++.  .+....++.....  ..  ...+.++.     ....+.+
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~--~~g~a~Dl~~~~~--~~--~v~~~td~-----~~~~~~l   74 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG--APGVAADLSHIDT--PA--KVTGYADG-----ELWEKAL   74 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC--CcccccchhhcCc--Cc--eEEEecCC-----CchHHHh
Confidence            345689999999999999999999665  5899999933  2322334433211  11  22333332     1113344


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE  196 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~  196 (206)
                      .+  -|++|++||.....     ..   ++.+.+..|+...-.+.++    |++.+..+ +|+++|..
T Consensus        75 ~g--aDvVVitaG~~~~~-----~~---tR~dll~~N~~i~~~i~~~----i~~~~~~~-iviv~SNP  127 (321)
T PTZ00325         75 RG--ADLVLICAGVPRKP-----GM---TRDDLFNTNAPIVRDLVAA----VASSAPKA-IVGIVSNP  127 (321)
T ss_pred             CC--CCEEEECCCCCCCC-----CC---CHHHHHHHHHHHHHHHHHH----HHHHCCCe-EEEEecCc
Confidence            44  44999999975321     12   2456688888765555555    55566566 88888743

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.99  E-value=4.5e-05  Score=59.44  Aligned_cols=75  Identities=28%  Similarity=0.427  Sum_probs=54.1

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCccE
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGV  135 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id~  135 (206)
                      ++|+||+|.+|+.+++.|.+.|++|.++.|+...  +..++++..  +.  ..+..|..|.     +.+.+.+.+.+  .
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~--~~~~~l~~~--g~--~vv~~d~~~~-----~~l~~al~g~d--~   67 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSS--DRAQQLQAL--GA--EVVEADYDDP-----ESLVAALKGVD--A   67 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHH--HHHHHHHHT--TT--EEEES-TT-H-----HHHHHHHTTCS--E
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccch--hhhhhhhcc--cc--eEeecccCCH-----HHHHHHHcCCc--e
Confidence            6899999999999999999999999999999832  223344442  33  3457787765     66667777655  8


Q ss_pred             EEEecccc
Q 028656          136 LINNVGIS  143 (206)
Q Consensus       136 lvnnAg~~  143 (206)
                      ++.+.+..
T Consensus        68 v~~~~~~~   75 (233)
T PF05368_consen   68 VFSVTPPS   75 (233)
T ss_dssp             EEEESSCS
T ss_pred             EEeecCcc
Confidence            88776643

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.98  E-value=7.5e-05  Score=62.53  Aligned_cols=131  Identities=21%  Similarity=0.242  Sum_probs=83.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .+-..|+|+||+|++|+-++++|.++|+.|.++-|+.++.++... +  ...+.....+..|..... +....+.+..+.
T Consensus        77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~-~--~~~d~~~~~v~~~~~~~~-d~~~~~~~~~~~  152 (411)
T KOG1203|consen   77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG-V--FFVDLGLQNVEADVVTAI-DILKKLVEAVPK  152 (411)
T ss_pred             CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc-c--cccccccceeeecccccc-chhhhhhhhccc
Confidence            456899999999999999999999999999999999988776554 1  112333444445544332 333444444432


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                       ...+++-++|.....    +     +..--..+...|+.++.+++.    ..+-.+ +|.+||..+...
T Consensus       153 -~~~~v~~~~ggrp~~----e-----d~~~p~~VD~~g~knlvdA~~----~aGvk~-~vlv~si~~~~~  207 (411)
T KOG1203|consen  153 -GVVIVIKGAGGRPEE----E-----DIVTPEKVDYEGTKNLVDACK----KAGVKR-VVLVGSIGGTKF  207 (411)
T ss_pred             -cceeEEecccCCCCc----c-----cCCCcceecHHHHHHHHHHHH----HhCCce-EEEEEeecCccc
Confidence             233566666543221    1     112224566678888888873    345556 999988766543

>PLN00106 malate dehydrogenase

Probab=97.93  E-value=9.5e-05  Score=60.60  Aligned_cols=120  Identities=20%  Similarity=0.308  Sum_probs=72.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      ..+++.|+|++|.+|.+++..++.++.  +++++|+++.  +..+.++.....  ...  ..++++.     +...+.+.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~--~g~a~Dl~~~~~--~~~--i~~~~~~-----~d~~~~l~   85 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANT--PGVAADVSHINT--PAQ--VRGFLGD-----DQLGDALK   85 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCC--CeeEchhhhCCc--Cce--EEEEeCC-----CCHHHHcC
Confidence            357899999999999999999997664  7999999872  222223333211  111  1232222     12333445


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAEL  197 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~  197 (206)
                      +  .|++|+.||.....     ..+   +.+.+..|.-....+.+.    +.+.+..+ +|+++|--.
T Consensus        86 ~--aDiVVitAG~~~~~-----g~~---R~dll~~N~~i~~~i~~~----i~~~~p~a-ivivvSNPv  138 (323)
T PLN00106         86 G--ADLVIIPAGVPRKP-----GMT---RDDLFNINAGIVKTLCEA----VAKHCPNA-LVNIISNPV  138 (323)
T ss_pred             C--CCEEEEeCCCCCCC-----CCC---HHHHHHHHHHHHHHHHHH----HHHHCCCe-EEEEeCCCc
Confidence            4  45999999975431     122   456678888765555555    55555555 777776433

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.91  E-value=2e-05  Score=67.48  Aligned_cols=79  Identities=20%  Similarity=0.276  Sum_probs=52.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +++|+++|||+++ +|++.|+.|+++|++|++.+++........+++.+.  +.++  ...+  +. .+    +   ...
T Consensus         3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~--g~~~--~~~~--~~-~~----~---~~~   67 (447)
T PRK02472          3 YQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEE--GIKV--ICGS--HP-LE----L---LDE   67 (447)
T ss_pred             cCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhc--CCEE--EeCC--CC-HH----H---hcC
Confidence            5689999999985 999999999999999999998765444444455442  2222  1111  11 11    1   111


Q ss_pred             CCccEEEEeccccCC
Q 028656          131 LDVGVLINNVGISYP  145 (206)
Q Consensus       131 ~~id~lvnnAg~~~~  145 (206)
                       ++|.+|+++|+...
T Consensus        68 -~~d~vV~s~gi~~~   81 (447)
T PRK02472         68 -DFDLMVKNPGIPYT   81 (447)
T ss_pred             -cCCEEEECCCCCCC
Confidence             35699999998754

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.85  E-value=0.00044  Score=51.54  Aligned_cols=109  Identities=17%  Similarity=0.172  Sum_probs=73.5

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      .+.|.||||-.|..++++..++|+.|+.+.||++++...          ..+...+.|+.|.     +.+.+.+.+.|  
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~----------~~~~i~q~Difd~-----~~~a~~l~g~D--   64 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR----------QGVTILQKDIFDL-----TSLASDLAGHD--   64 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc----------ccceeecccccCh-----hhhHhhhcCCc--
Confidence            578999999999999999999999999999999876532          2356778888876     44445555545  


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      ++|..-|...+..        +  ..+.+        -.+.+...+...+..| ++.++...+..
T Consensus        65 aVIsA~~~~~~~~--------~--~~~~k--------~~~~li~~l~~agv~R-llVVGGAGSL~  110 (211)
T COG2910          65 AVISAFGAGASDN--------D--ELHSK--------SIEALIEALKGAGVPR-LLVVGGAGSLE  110 (211)
T ss_pred             eEEEeccCCCCCh--------h--HHHHH--------HHHHHHHHHhhcCCee-EEEEcCccceE
Confidence            8988876543211        1  11111        1344444454446666 88887765543

>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]

Probab=97.83  E-value=7.7e-05  Score=59.24  Aligned_cols=129  Identities=16%  Similarity=0.177  Sum_probs=90.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .+|-++-|.||+|.+|+-++.+|++.|-+|++=.|..+.--   .+++-.+.=+++.+...|..|+  +.++++.   ..
T Consensus        59 ~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~---r~lkvmGdLGQvl~~~fd~~De--dSIr~vv---k~  130 (391)
T KOG2865|consen   59 VSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDP---RHLKVMGDLGQVLFMKFDLRDE--DSIRAVV---KH  130 (391)
T ss_pred             ccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccch---hheeecccccceeeeccCCCCH--HHHHHHH---Hh
Confidence            56889999999999999999999999999999888654321   1222233346788999999987  5555444   33


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      -+  ++||-.|.-.+..    ..+      .-++|..++=.+++.+-.    .+..+ +|.+|+..+....|+.
T Consensus       131 sN--VVINLIGrd~eTk----nf~------f~Dvn~~~aerlAricke----~GVer-fIhvS~Lganv~s~Sr  187 (391)
T KOG2865|consen  131 SN--VVINLIGRDYETK----NFS------FEDVNVHIAERLARICKE----AGVER-FIHVSCLGANVKSPSR  187 (391)
T ss_pred             Cc--EEEEeeccccccC----Ccc------cccccchHHHHHHHHHHh----hChhh-eeehhhccccccChHH
Confidence            35  8999988765432    111      245788888777777643    35556 9999998766655543

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=97.79  E-value=0.00016  Score=54.49  Aligned_cols=78  Identities=22%  Similarity=0.339  Sum_probs=49.0

Q ss_pred             cCCcEEEEECC----------------CChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecC
Q 028656           51 KYGSWALVTGP----------------TDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS  114 (206)
Q Consensus        51 ~~~k~vlItGa----------------s~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  114 (206)
                      ++||+|+||+|                ||..|.++|+++..+|++|+++..+.. +.          +...+..+.++  
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~-~~----------~p~~~~~i~v~--   67 (185)
T PF04127_consen    1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS-LP----------PPPGVKVIRVE--   67 (185)
T ss_dssp             -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS---------------TTEEEEE-S--
T ss_pred             CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc-cc----------ccccceEEEec--
Confidence            35778888865                688999999999999999999988742 11          12234444433  


Q ss_pred             CCchHHHHHHHHHhcCCCccEEEEeccccC
Q 028656          115 GDLDEGVERIKEAIEGLDVGVLINNVGISY  144 (206)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~id~lvnnAg~~~  144 (206)
                       +.++..+.+.+.+++.  |++|++|+++.
T Consensus        68 -sa~em~~~~~~~~~~~--Di~I~aAAVsD   94 (185)
T PF04127_consen   68 -SAEEMLEAVKELLPSA--DIIIMAAAVSD   94 (185)
T ss_dssp             -SHHHHHHHHHHHGGGG--SEEEE-SB--S
T ss_pred             -chhhhhhhhccccCcc--eeEEEecchhh
Confidence             3356677777777764  59999999875

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.79  E-value=0.00016  Score=57.82  Aligned_cols=48  Identities=21%  Similarity=0.432  Sum_probs=42.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQA   99 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~   99 (206)
                      .++|+++|+|+ ||+|+++++.+++.|++|.+.+|+.++.+++.+++..
T Consensus       115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~  162 (270)
T TIGR00507       115 RPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQR  162 (270)
T ss_pred             ccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhh
Confidence            45889999999 5999999999999999999999999888888877654

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=97.75  E-value=0.00014  Score=59.71  Aligned_cols=116  Identities=24%  Similarity=0.255  Sum_probs=65.8

Q ss_pred             EEEEECCCChHHHHHHHHHHHCC-------CcEEEEEcChh--hHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTG-------LNLVLVGRNPD--KLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIK  125 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g-------~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  125 (206)
                      +++||||+|.+|.+++..|+..+       .+|++.+++++  .++....++....     .....|+...     ....
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~-----~~~~~~~~~~-----~~~~   73 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCA-----FPLLKSVVAT-----TDPE   73 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhcc-----ccccCCceec-----CCHH
Confidence            48999999999999999999854       58999999653  2222111221100     0001121111     2233


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEecc
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGK  194 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS  194 (206)
                      +.+.+  .|++|++||.....     ..+.   .+.++.|+.    +.+...+.+.+.. ....++++|.
T Consensus        74 ~~l~~--aDiVI~tAG~~~~~-----~~~R---~~l~~~N~~----i~~~i~~~i~~~~~~~~iiivvsN  129 (325)
T cd01336          74 EAFKD--VDVAILVGAMPRKE-----GMER---KDLLKANVK----IFKEQGEALDKYAKKNVKVLVVGN  129 (325)
T ss_pred             HHhCC--CCEEEEeCCcCCCC-----CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCCeEEEEecC
Confidence            44444  55999999986431     2232   445666766    5566666666563 2332555554

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=97.73  E-value=0.00012  Score=59.63  Aligned_cols=83  Identities=22%  Similarity=0.351  Sum_probs=64.6

Q ss_pred             EEEEECCCChHHHHHHHHHHH----CCCcEEEEEcChhhHHHHHHHHHHhcCC--ceEEEEEEecCCCchHHHHHHHHHh
Q 028656           55 WALVTGPTDGIGKSFAFQLAK----TGLNLVLVGRNPDKLKDVSDSIQAKYAK--TQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~----~g~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      .++|-||||--|.=+++++..    .|..+.+.+||+.++++..+.+.+..+.  .....+.+|.+|+  +.++++..  
T Consensus         7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~--~Sl~emak--   82 (423)
T KOG2733|consen    7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANE--ASLDEMAK--   82 (423)
T ss_pred             eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCH--HHHHHHHh--
Confidence            389999999999999999998    7889999999999999999888765422  2223778898887  54555443  


Q ss_pred             cCCCccEEEEeccccC
Q 028656          129 EGLDVGVLINNVGISY  144 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~  144 (206)
                       +-+  +++||+|--.
T Consensus        83 -~~~--vivN~vGPyR   95 (423)
T KOG2733|consen   83 -QAR--VIVNCVGPYR   95 (423)
T ss_pred             -hhE--EEEeccccce
Confidence             335  8999998654

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=97.71  E-value=0.0018  Score=46.70  Aligned_cols=113  Identities=18%  Similarity=0.333  Sum_probs=71.1

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcCC--ceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYAK--TQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .+.|.|++|.+|.+++..+...+.  ++++.|+++++++....+++.....  .......   .+.         +.+. 
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~---------~~~~-   68 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GDY---------EALK-   68 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SSG---------GGGT-
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---ccc---------cccc-
Confidence            588999999999999999998864  7999999998888888777654222  2222222   111         1122 


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEec
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG  193 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~is  193 (206)
                       +-|++|..||.....     ..+.   .+.++.|..    +.+...+.+.+.....-++.++
T Consensus        69 -~aDivvitag~~~~~-----g~sR---~~ll~~N~~----i~~~~~~~i~~~~p~~~vivvt  118 (141)
T PF00056_consen   69 -DADIVVITAGVPRKP-----GMSR---LDLLEANAK----IVKEIAKKIAKYAPDAIVIVVT  118 (141)
T ss_dssp             -TESEEEETTSTSSST-----TSSH---HHHHHHHHH----HHHHHHHHHHHHSTTSEEEE-S
T ss_pred             -cccEEEEeccccccc-----cccH---HHHHHHhHh----HHHHHHHHHHHhCCccEEEEeC
Confidence             455999999975431     2232   344566665    5555555555555444144444

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.65  E-value=0.00036  Score=50.81  Aligned_cols=48  Identities=27%  Similarity=0.494  Sum_probs=41.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCC-CcEEEEEcChhhHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDSIQ   98 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~~~   98 (206)
                      ..++++++|+|+ |++|+++++.+.+.| .+|.+.+|+.++.++..+++.
T Consensus        16 ~~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~   64 (155)
T cd01065          16 ELKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFG   64 (155)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh
Confidence            356889999998 799999999999986 789999999988887776654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=97.63  E-value=0.00059  Score=56.17  Aligned_cols=79  Identities=24%  Similarity=0.421  Sum_probs=53.3

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      |++++|+||+||+|...++-....|++++++..+.++.+ ..+++   + ...+    .|..+.  +..+.+.+..++..
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~-~~~~l---G-Ad~v----i~y~~~--~~~~~v~~~t~g~g  211 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE-LLKEL---G-ADHV----INYREE--DFVEQVRELTGGKG  211 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH-HHHhc---C-CCEE----EcCCcc--cHHHHHHHHcCCCC
Confidence            899999999999999988888889988777777666555 33332   2 2222    122222  35566666666545


Q ss_pred             ccEEEEeccc
Q 028656          133 VGVLINNVGI  142 (206)
Q Consensus       133 id~lvnnAg~  142 (206)
                      +|+++...|.
T Consensus       212 vDvv~D~vG~  221 (326)
T COG0604         212 VDVVLDTVGG  221 (326)
T ss_pred             ceEEEECCCH
Confidence            7788887763

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.61  E-value=0.00077  Score=55.73  Aligned_cols=66  Identities=20%  Similarity=0.335  Sum_probs=53.0

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh---------------------hhHHHHHHHHHHhcCCce
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP---------------------DKLKDVSDSIQAKYAKTQ  105 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~---------------------~~~~~~~~~~~~~~~~~~  105 (206)
                      .-++++++|+|.|+ ||+|..+++.|++.|. ++.++|++.                     .+.+.+++.+++.+++.+
T Consensus        19 Q~~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~   97 (338)
T PRK12475         19 QRKIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVE   97 (338)
T ss_pred             HHhhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcE
Confidence            34577999999998 6899999999999997 899999873                     355666778888878888


Q ss_pred             EEEEEEecC
Q 028656          106 IKSVVVDFS  114 (206)
Q Consensus       106 ~~~~~~d~~  114 (206)
                      +..+..|++
T Consensus        98 i~~~~~~~~  106 (338)
T PRK12475         98 IVPVVTDVT  106 (338)
T ss_pred             EEEEeccCC
Confidence            877766654

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.59  E-value=0.0007  Score=54.40  Aligned_cols=51  Identities=24%  Similarity=0.481  Sum_probs=45.3

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAK  100 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~  100 (206)
                      ++..++.++|.|| ||-+++++.+|++.|. ++.++.|+.++.+++++.+.+.
T Consensus       122 ~~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~  173 (283)
T COG0169         122 VDVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGEL  173 (283)
T ss_pred             cccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhc
Confidence            4556899999998 5899999999999995 7999999999999999988764

>COG4982 3-oxoacyl-[acyl-carrier protein]

Probab=97.57  E-value=0.0076  Score=52.86  Aligned_cols=157  Identities=13%  Similarity=0.081  Sum_probs=94.0

Q ss_pred             CcccccCCcEEEEECCC-ChHHHHHHHHHHHCCCcEEEEEcCh-hhHHHHHHHHHHhc--CCceEEEEEEecCCC--chH
Q 028656           46 AKNLRKYGSWALVTGPT-DGIGKSFAFQLAKTGLNLVLVGRNP-DKLKDVSDSIQAKY--AKTQIKSVVVDFSGD--LDE  119 (206)
Q Consensus        46 ~~~~~~~~k~vlItGas-~giG~~~a~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~--~~~  119 (206)
                      +...+..+++++||||+ +.||-+++..|+.-|++|+++..+. +...+..+.+-..+  .+..+.++..+..+.  ++.
T Consensus       389 p~~~~y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdA  468 (866)
T COG4982         389 PNGGTYGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDA  468 (866)
T ss_pred             CCCCCcccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHH
Confidence            34566789999999999 8899999999999999999986654 33444445554332  456666677777653  344


Q ss_pred             HHHHHHHHhc------------CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCC-
Q 028656          120 GVERIKEAIE------------GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKG-  186 (206)
Q Consensus       120 ~~~~~~~~~~------------~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-  186 (206)
                      .++-+.++-.            ..++|.++--|.....+.  +.+.... -+-.+++-+++...+.-.+.+.-.+++-. 
T Consensus       469 lIewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~--l~~agsr-aE~~~rilLw~V~Rliggl~~~~s~r~v~~  545 (866)
T COG4982         469 LIEWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGE--LADAGSR-AEFAMRILLWNVLRLIGGLKKQGSSRGVDT  545 (866)
T ss_pred             HHHHhccccccccCCcceecccccCcceeeecccCCccCc--cccCCch-HHHHHHHHHHHHHHHHHHhhhhccccCccc
Confidence            4444433321            125777887776654432  4444322 24446667777777766665533223211 


Q ss_pred             -ceEEEecc-ccccccccCCC
Q 028656          187 -LSMLNIGK-AELMCSVRFHY  205 (206)
Q Consensus       187 -~~iv~isS-~~~~~~~~~~y  205 (206)
                       ..+|.-.| --|.++..+.|
T Consensus       546 R~hVVLPgSPNrG~FGgDGaY  566 (866)
T COG4982         546 RLHVVLPGSPNRGMFGGDGAY  566 (866)
T ss_pred             ceEEEecCCCCCCccCCCcch
Confidence             13666555 33555554444

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.57  E-value=0.00094  Score=51.15  Aligned_cols=83  Identities=20%  Similarity=0.392  Sum_probs=58.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEEE
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIKS  108 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~  108 (206)
                      -++++++|+|.|+ ||+|.++++.|++.|. ++.++|.+                   ..+.+.+++.+++.++..++..
T Consensus        17 ~kl~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~   95 (202)
T TIGR02356        17 QRLLNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTA   95 (202)
T ss_pred             HHhcCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence            4477899999996 6999999999999997 89999887                   2455666777777777776666


Q ss_pred             EEEecCCCchHHHHHHHHHhcCCCccEEEEec
Q 028656          109 VVVDFSGDLDEGVERIKEAIEGLDVGVLINNV  140 (206)
Q Consensus       109 ~~~d~~~~~~~~~~~~~~~~~~~~id~lvnnA  140 (206)
                      ...++.+      +.+.+.+.+.|  ++|.+.
T Consensus        96 ~~~~i~~------~~~~~~~~~~D--~Vi~~~  119 (202)
T TIGR02356        96 LKERVTA------ENLELLINNVD--LVLDCT  119 (202)
T ss_pred             ehhcCCH------HHHHHHHhCCC--EEEECC
Confidence            6554432      12233344444  777764

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.56  E-value=0.00077  Score=54.41  Aligned_cols=50  Identities=20%  Similarity=0.404  Sum_probs=44.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhc
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKY  101 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~  101 (206)
                      .++|+++|.|+ ||.|++++..|++.|. +|.+++|+.++.+++.+++...+
T Consensus       125 ~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~  175 (284)
T PRK12549        125 ASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF  175 (284)
T ss_pred             ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC
Confidence            56789999998 6899999999999997 79999999999999988886643

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.56  E-value=0.0035  Score=51.12  Aligned_cols=113  Identities=19%  Similarity=0.322  Sum_probs=69.8

Q ss_pred             EEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHHHhcC--CceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQAKYA--KTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .+.|.|+ |++|.+++..++.+|  .+++++++++++.+....++.....  ....... .   .. .       +.+. 
T Consensus         2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~-~---~~-~-------~~l~-   67 (306)
T cd05291           2 KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK-A---GD-Y-------SDCK-   67 (306)
T ss_pred             EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE-c---CC-H-------HHhC-
Confidence            5788886 899999999999999  5899999999988888888765321  1111111 1   11 0       1223 


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                       +-|++|+++|.....     ..+.   ...++.|.-    +.+...+.+.+......++++|.
T Consensus        68 -~aDIVIitag~~~~~-----g~~R---~dll~~N~~----i~~~~~~~i~~~~~~~~vivvsN  118 (306)
T cd05291          68 -DADIVVITAGAPQKP-----GETR---LDLLEKNAK----IMKSIVPKIKASGFDGIFLVASN  118 (306)
T ss_pred             -CCCEEEEccCCCCCC-----CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCeEEEEecC
Confidence             345999999875431     2232   233555554    55666665655544442555553

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=97.52  E-value=0.00023  Score=62.28  Aligned_cols=48  Identities=25%  Similarity=0.495  Sum_probs=42.1

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~   97 (206)
                      .++++|+++|+|+ ||+|+++++.|+++|++|++++|+.++.+++.+++
T Consensus       375 ~~~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l  422 (529)
T PLN02520        375 SPLAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKELADAV  422 (529)
T ss_pred             cCCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh
Confidence            3467999999999 59999999999999999999999988887776654

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=97.51  E-value=0.00078  Score=54.83  Aligned_cols=80  Identities=23%  Similarity=0.349  Sum_probs=55.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .+++++|+|+++++|.++++.+...|++|++++++.++.+.+.    ..  +..   ...|..+.  ...+.+.+...+.
T Consensus       166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~----~~--~~~---~~~~~~~~--~~~~~~~~~~~~~  234 (342)
T cd08266         166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAK----EL--GAD---YVIDYRKE--DFVREVRELTGKR  234 (342)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----Hc--CCC---eEEecCCh--HHHHHHHHHhCCC
Confidence            4789999999999999999999999999999999887655432    21  111   11243332  3344555544444


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      ++|++++++|.
T Consensus       235 ~~d~~i~~~g~  245 (342)
T cd08266         235 GVDVVVEHVGA  245 (342)
T ss_pred             CCcEEEECCcH
Confidence            57799999873

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=97.47  E-value=0.0012  Score=53.22  Aligned_cols=80  Identities=19%  Similarity=0.262  Sum_probs=54.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+|+++++|.++++.+..+|.+|++++++.++.+.+. ++   + -..    .+|..+.  +..+.+.+..++.
T Consensus       144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~---g-~~~----~~~~~~~--~~~~~~~~~~~~~  212 (325)
T cd08253         144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVR-QA---G-ADA----VFNYRAE--DLADRILAATAGQ  212 (325)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-Hc---C-CCE----EEeCCCc--CHHHHHHHHcCCC
Confidence            4789999999999999999999999999999999887655542 11   1 111    1233332  3334444444433


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++++++|.
T Consensus       213 ~~d~vi~~~~~  223 (325)
T cd08253         213 GVDVIIEVLAN  223 (325)
T ss_pred             ceEEEEECCch
Confidence            57799988754

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=97.44  E-value=0.0015  Score=52.45  Aligned_cols=80  Identities=23%  Similarity=0.399  Sum_probs=53.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .+++++|+|+++++|.++++.+...|++|++++++.++.+.+ +++     +..   ...+..+.  ...+.+.....+.
T Consensus       139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~-----g~~---~~~~~~~~--~~~~~~~~~~~~~  207 (323)
T cd05276         139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEAC-RAL-----GAD---VAINYRTE--DFAEEVKEATGGR  207 (323)
T ss_pred             CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHc-----CCC---EEEeCCch--hHHHHHHHHhCCC
Confidence            478999999999999999999999999999999987766544 222     111   11222221  3334444444333


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++++++|.
T Consensus       208 ~~d~vi~~~g~  218 (323)
T cd05276         208 GVDVILDMVGG  218 (323)
T ss_pred             CeEEEEECCch
Confidence            57789888764

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.41  E-value=0.0022  Score=53.06  Aligned_cols=66  Identities=17%  Similarity=0.328  Sum_probs=51.1

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh---------------------hhHHHHHHHHHHhcCCce
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP---------------------DKLKDVSDSIQAKYAKTQ  105 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~---------------------~~~~~~~~~~~~~~~~~~  105 (206)
                      .-++++++|+|.|+ ||+|..+++.|++.|. ++.++|.+.                     .+.+.+++.+++.++...
T Consensus        19 Q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~   97 (339)
T PRK07688         19 QQKLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVR   97 (339)
T ss_pred             HHHhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcE
Confidence            34577899999999 6999999999999998 899999863                     344555677777767777


Q ss_pred             EEEEEEecC
Q 028656          106 IKSVVVDFS  114 (206)
Q Consensus       106 ~~~~~~d~~  114 (206)
                      +.....+++
T Consensus        98 v~~~~~~~~  106 (339)
T PRK07688         98 VEAIVQDVT  106 (339)
T ss_pred             EEEEeccCC
Confidence            766665554

>cd08293 PTGR2 Prostaglandin reductase

Probab=97.41  E-value=0.0016  Score=53.55  Aligned_cols=45  Identities=13%  Similarity=0.104  Sum_probs=37.3

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~   97 (206)
                      +++++|+||++++|...++.....|+ +|+.+++++++.+.+.+++
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l  200 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL  200 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc
Confidence            48999999999999998887778898 7999999887766555433

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.40  E-value=0.0011  Score=50.65  Aligned_cols=48  Identities=19%  Similarity=0.237  Sum_probs=42.1

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDS   96 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~   96 (206)
                      ..+++||+++|+|.+ .+|+.+++.|.+.|++|++.+++.+++++..+.
T Consensus        23 ~~~l~gk~v~I~G~G-~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~   70 (200)
T cd01075          23 TDSLEGKTVAVQGLG-KVGYKLAEHLLEEGAKLIVADINEEAVARAAEL   70 (200)
T ss_pred             CCCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence            455779999999996 899999999999999999999998877776654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=97.40  E-value=0.0024  Score=52.54  Aligned_cols=109  Identities=21%  Similarity=0.184  Sum_probs=65.2

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC-------cEEEEEcChhh--HHHHHHHHHHhcCCceEEEEEEecCCCchHH-----
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL-------NLVLVGRNPDK--LKDVSDSIQAKYAKTQIKSVVVDFSGDLDEG-----  120 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~-------~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----  120 (206)
                      ++.|+|++|.+|.+++..++..|.       .+++.|++++.  ++.                ...|+.+.....     
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g----------------~~~Dl~d~~~~~~~~~~   64 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEG----------------VVMELMDCAFPLLDGVV   64 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccce----------------eEeehhcccchhcCcee
Confidence            478999999999999999998653       49999996543  222                223333321000     


Q ss_pred             -HHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEec
Q 028656          121 -VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIG  193 (206)
Q Consensus       121 -~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~is  193 (206)
                       .....+.+.+  -|++|+.||.....     .   ++..+.++.|+.    +.+.+.+.+.+.. ....++++|
T Consensus        65 ~~~~~~~~~~~--aDiVVitAG~~~~~-----~---~tr~~ll~~N~~----i~k~i~~~i~~~~~~~~iiivvs  125 (324)
T TIGR01758        65 PTHDPAVAFTD--VDVAILVGAFPRKE-----G---MERRDLLSKNVK----IFKEQGRALDKLAKKDCKVLVVG  125 (324)
T ss_pred             ccCChHHHhCC--CCEEEEcCCCCCCC-----C---CcHHHHHHHHHH----HHHHHHHHHHhhCCCCeEEEEeC
Confidence             0122344454  55999999975321     1   224556777766    6667777676652 334155554

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK05086 malate dehydrogenase; Provisional

Probab=97.39  E-value=0.0026  Score=52.08  Aligned_cols=115  Identities=20%  Similarity=0.228  Sum_probs=63.2

Q ss_pred             cEEEEECCCChHHHHHHHHHHH-C--CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAK-T--GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~-~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +.++|.||+|++|.+++..+.. .  +..+++.+|++. .+...-++..  .+... .+.....+       .+.+.+. 
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~--~~~~~-~i~~~~~~-------d~~~~l~-   68 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSH--IPTAV-KIKGFSGE-------DPTPALE-   68 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-Ccceehhhhc--CCCCc-eEEEeCCC-------CHHHHcC-
Confidence            3689999999999999998854 2  457888898753 2211112221  11111 11111011       1122334 


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                       +.|++|.++|.....     ..+.   ...+..|....-.+    .+.|.+.+..+ +|.+.|
T Consensus        69 -~~DiVIitaG~~~~~-----~~~R---~dll~~N~~i~~~i----i~~i~~~~~~~-ivivvs  118 (312)
T PRK05086         69 -GADVVLISAGVARKP-----GMDR---SDLFNVNAGIVKNL----VEKVAKTCPKA-CIGIIT  118 (312)
T ss_pred             -CCCEEEEcCCCCCCC-----CCCH---HHHHHHHHHHHHHH----HHHHHHhCCCe-EEEEcc
Confidence             355999999986432     1222   34466677644444    44455555455 666665

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=97.35  E-value=0.0031  Score=49.78  Aligned_cols=64  Identities=20%  Similarity=0.299  Sum_probs=48.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh-------------------hhHHHHHHHHHHhcCCceEEE
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP-------------------DKLKDVSDSIQAKYAKTQIKS  108 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~  108 (206)
                      -++++++|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+++.+++.+++.++..
T Consensus        28 ~~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~  106 (245)
T PRK05690         28 EKLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET  106 (245)
T ss_pred             HHhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence            4577899999999 8999999999999996 788887642                   345556677777777777666


Q ss_pred             EEEec
Q 028656          109 VVVDF  113 (206)
Q Consensus       109 ~~~d~  113 (206)
                      ....+
T Consensus       107 ~~~~i  111 (245)
T PRK05690        107 INARL  111 (245)
T ss_pred             EeccC
Confidence            55443

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.35  E-value=0.002  Score=51.95  Aligned_cols=49  Identities=18%  Similarity=0.374  Sum_probs=42.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAK  100 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~  100 (206)
                      .++|+++|.|+ ||-|++++..|++.|+ ++.+.+|+.++.+++.+.+...
T Consensus       125 ~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~  174 (283)
T PRK14027        125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNA  174 (283)
T ss_pred             cCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc
Confidence            45889999998 7999999999999997 7999999999999888877543

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.34  E-value=0.0016  Score=52.44  Aligned_cols=48  Identities=31%  Similarity=0.515  Sum_probs=42.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQA   99 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~   99 (206)
                      +++|+++|.|+ ||.|++++..|++.|+ +|.++.|+.++.+++++++..
T Consensus       123 ~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~  171 (282)
T TIGR01809       123 LAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQ  171 (282)
T ss_pred             cCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhh
Confidence            56889999987 7999999999999997 799999999999888877643

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=97.33  E-value=0.0024  Score=52.49  Aligned_cols=44  Identities=14%  Similarity=0.188  Sum_probs=37.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~   95 (206)
                      .|++++|+||++++|..+++....+|++|+.++++.++.+.+++
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~  194 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKN  194 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            58899999999999999988777899999999998877665544

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.31  E-value=0.011  Score=48.41  Aligned_cols=117  Identities=15%  Similarity=0.275  Sum_probs=73.2

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcCC-ceEEEEEEecCCCchHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYAK-TQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      .+++++.|+|+ |++|.+++..++.+|.  ++++.|+++++++..+.++....+- ..+... .   ++        .+.
T Consensus         4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~-~---~~--------~~~   70 (315)
T PRK00066          4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY-A---GD--------YSD   70 (315)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE-e---CC--------HHH
Confidence            34778999998 9999999999999886  7999999999888888888764211 111111 1   11        122


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      +.+  -|++|..||.....     ..+..   ..++.|..    +.+...+.+.+......++++|-
T Consensus        71 ~~~--adivIitag~~~k~-----g~~R~---dll~~N~~----i~~~i~~~i~~~~~~~~vivvsN  123 (315)
T PRK00066         71 CKD--ADLVVITAGAPQKP-----GETRL---DLVEKNLK----IFKSIVGEVMASGFDGIFLVASN  123 (315)
T ss_pred             hCC--CCEEEEecCCCCCC-----CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCeEEEEccC
Confidence            343  44999999985431     22332   34555555    45555555555443332555553

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.30  E-value=0.0026  Score=53.37  Aligned_cols=60  Identities=25%  Similarity=0.418  Sum_probs=47.7

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEEEE
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIKSV  109 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~  109 (206)
                      ++++++|+|.|+ ||+|..+++.|++.|. ++.++|++                   ..+.+.+++.+++.++..++...
T Consensus       132 ~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~  210 (376)
T PRK08762        132 RLLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAV  210 (376)
T ss_pred             HHhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence            467888999976 6999999999999997 79999987                   35677777888777666665554


Q ss_pred             E
Q 028656          110 V  110 (206)
Q Consensus       110 ~  110 (206)
                      .
T Consensus       211 ~  211 (376)
T PRK08762        211 Q  211 (376)
T ss_pred             e
Confidence            4

>PRK06849 hypothetical protein; Provisional

Probab=97.28  E-value=0.0027  Score=53.48  Aligned_cols=82  Identities=15%  Similarity=0.187  Sum_probs=52.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC-CchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG-DLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~  130 (206)
                      +.++|+|||++.++|.++++.|.+.|++|++++.++.......+.+      ...  ..++..+ +.+..++.+.+....
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~------d~~--~~~p~p~~d~~~~~~~L~~i~~~   74 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAV------DGF--YTIPSPRWDPDAYIQALLSIVQR   74 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhh------hhe--EEeCCCCCCHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999865543221111      111  2222111 223344555444444


Q ss_pred             CCccEEEEecc
Q 028656          131 LDVGVLINNVG  141 (206)
Q Consensus       131 ~~id~lvnnAg  141 (206)
                      .++|++|...+
T Consensus        75 ~~id~vIP~~e   85 (389)
T PRK06849         75 ENIDLLIPTCE   85 (389)
T ss_pred             cCCCEEEECCh
Confidence            45678887654

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=97.28  E-value=0.0024  Score=52.19  Aligned_cols=42  Identities=14%  Similarity=0.178  Sum_probs=36.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .|.+++|+||++++|...++.....|++|+.++++.++.+.+
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~  179 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL  179 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            488999999999999998887778899999999988775544

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.27  E-value=0.0037  Score=44.55  Aligned_cols=79  Identities=22%  Similarity=0.448  Sum_probs=57.4

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEEEEEEe
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIKSVVVD  112 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~d  112 (206)
                      +++++|.|+ ||+|.++++.|++.|. ++.++|.+                   ..+.+.+++.+++.+|..++.....+
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            578888888 5999999999999998 78888774                   24567778888888888888888777


Q ss_pred             cCCCchHHHHHHHHHhcCCCccEEEEec
Q 028656          113 FSGDLDEGVERIKEAIEGLDVGVLINNV  140 (206)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~id~lvnnA  140 (206)
                      +.+   +   ...+.+.+  .|++|.+.
T Consensus        81 ~~~---~---~~~~~~~~--~d~vi~~~  100 (135)
T PF00899_consen   81 IDE---E---NIEELLKD--YDIVIDCV  100 (135)
T ss_dssp             CSH---H---HHHHHHHT--SSEEEEES
T ss_pred             ccc---c---cccccccC--CCEEEEec
Confidence            632   2   22233343  44888774

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.27  E-value=0.0019  Score=48.42  Aligned_cols=43  Identities=21%  Similarity=0.278  Sum_probs=35.9

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK   91 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~   91 (206)
                      ..+++|+++.|.|. |.||+++|+.+...|++|+..+|......
T Consensus        31 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~~   73 (178)
T PF02826_consen   31 GRELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPEE   73 (178)
T ss_dssp             BS-STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred             ccccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChhh
Confidence            34578999999988 79999999999999999999999876543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=97.26  E-value=0.0021  Score=53.24  Aligned_cols=43  Identities=14%  Similarity=0.170  Sum_probs=37.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS   94 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~   94 (206)
                      .|++++|+||++++|...++.....|++|+.++++.++.+.+.
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~  200 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK  200 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence            4889999999999999998888888999999998887765544

>cd00704 MDH Malate dehydrogenase

Probab=97.23  E-value=0.0047  Score=50.76  Aligned_cols=114  Identities=22%  Similarity=0.251  Sum_probs=66.3

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC-------cEEEEEcCh--hhHHHHHHHHHHhc-CCceEEEEEEecCCCchHHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL-------NLVLVGRNP--DKLKDVSDSIQAKY-AKTQIKSVVVDFSGDLDEGVERI  124 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~  124 (206)
                      ++.|+||+|.+|..++..++..|.       .+++.|+++  +.++..+.++.... +..+    ...+.       ...
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~----~~~i~-------~~~   70 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLK----GVVIT-------TDP   70 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccC----CcEEe-------cCh
Confidence            589999999999999999998663       499999987  44333333332210 0000    00111       123


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEec
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIG  193 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~is  193 (206)
                      .+.+.+  -|++|+.||.....     ..+.   .+.++.|..    +.+.+.+.+.+.. ....++.+|
T Consensus        71 ~~~~~~--aDiVVitAG~~~~~-----g~tR---~dll~~N~~----i~~~i~~~i~~~~~~~~iiivvs  126 (323)
T cd00704          71 EEAFKD--VDVAILVGAFPRKP-----GMER---ADLLRKNAK----IFKEQGEALNKVAKPTVKVLVVG  126 (323)
T ss_pred             HHHhCC--CCEEEEeCCCCCCc-----CCcH---HHHHHHhHH----HHHHHHHHHHHhCCCCeEEEEeC
Confidence            344554  45999999975431     2232   345565655    6777777776662 444244444

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.21  E-value=0.005  Score=51.29  Aligned_cols=65  Identities=15%  Similarity=0.318  Sum_probs=52.2

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh-------------------hhHHHHHHHHHHhcCCceEEE
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP-------------------DKLKDVSDSIQAKYAKTQIKS  108 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~  108 (206)
                      -++++.+|+|.|+ ||+|..+++.|+..|. ++.++|.+.                   .+.+.+++.+++.++..++..
T Consensus        24 ~~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~  102 (355)
T PRK05597         24 QSLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTV  102 (355)
T ss_pred             HHHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEE
Confidence            4477899999998 6999999999999997 788888752                   466777888888888888777


Q ss_pred             EEEecC
Q 028656          109 VVVDFS  114 (206)
Q Consensus       109 ~~~d~~  114 (206)
                      ...+++
T Consensus       103 ~~~~i~  108 (355)
T PRK05597        103 SVRRLT  108 (355)
T ss_pred             EEeecC
Confidence            655544

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.19  E-value=0.0066  Score=46.88  Aligned_cols=66  Identities=20%  Similarity=0.279  Sum_probs=50.6

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh------------------hhHHHHHHHHHHhcCCceEEE
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP------------------DKLKDVSDSIQAKYAKTQIKS  108 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~  108 (206)
                      .-++++++|+|.|+ ||+|..+++.|++.|. ++.+.|.+.                  .+.+.+++.+++.++..++..
T Consensus        23 q~~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~  101 (212)
T PRK08644         23 LEKLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEA  101 (212)
T ss_pred             HHHHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence            34477899999997 6999999999999997 599988872                  355566677777777777766


Q ss_pred             EEEecC
Q 028656          109 VVVDFS  114 (206)
Q Consensus       109 ~~~d~~  114 (206)
                      ....++
T Consensus       102 ~~~~i~  107 (212)
T PRK08644        102 HNEKID  107 (212)
T ss_pred             EeeecC
Confidence            665554

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=97.18  E-value=0.0045  Score=49.88  Aligned_cols=80  Identities=20%  Similarity=0.325  Sum_probs=52.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .+++++|+|+++++|.++++.....|++|+++.++.++.+.+ .++     +.. .  ..+..+.  +..+.+....++.
T Consensus       139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-----g~~-~--~~~~~~~--~~~~~~~~~~~~~  207 (325)
T TIGR02824       139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAAC-EAL-----GAD-I--AINYREE--DFVEVVKAETGGK  207 (325)
T ss_pred             CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc-----CCc-E--EEecCch--hHHHHHHHHcCCC
Confidence            478999999999999999998889999999999987765533 222     111 1  1122211  3334444444433


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++++++|.
T Consensus       208 ~~d~~i~~~~~  218 (325)
T TIGR02824       208 GVDVILDIVGG  218 (325)
T ss_pred             CeEEEEECCch
Confidence            57788888653

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=97.17  E-value=0.0041  Score=50.64  Aligned_cols=42  Identities=17%  Similarity=0.218  Sum_probs=36.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .|.+++|+||++++|...++.....|++|+.+++++++.+.+
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l  184 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWL  184 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            488999999999999998888888999999999888765544

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.16  E-value=0.0053  Score=47.91  Aligned_cols=64  Identities=23%  Similarity=0.320  Sum_probs=49.5

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEEE
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIKS  108 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~  108 (206)
                      -++++++|+|.|+ ||+|.++++.|++.|. ++.++|.+                   ..+.+.+++.+++.++..++..
T Consensus        17 ~~L~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~   95 (228)
T cd00757          17 EKLKNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEA   95 (228)
T ss_pred             HHHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence            3467899999996 6999999999999997 67777543                   2456667788888777777777


Q ss_pred             EEEec
Q 028656          109 VVVDF  113 (206)
Q Consensus       109 ~~~d~  113 (206)
                      .+.++
T Consensus        96 ~~~~i  100 (228)
T cd00757          96 YNERL  100 (228)
T ss_pred             eccee
Confidence            76655

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=97.13  E-value=0.007  Score=47.63  Aligned_cols=63  Identities=22%  Similarity=0.317  Sum_probs=47.7

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh-------------------hhHHHHHHHHHHhcCCceEEE
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP-------------------DKLKDVSDSIQAKYAKTQIKS  108 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~  108 (206)
                      -++++.+|+|.|+ ||+|..+++.|++.|. ++.++|.+.                   .+.+.+++.+++.+++.++..
T Consensus        20 ~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~   98 (240)
T TIGR02355        20 EALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINP   98 (240)
T ss_pred             HHHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence            3467889999988 5999999999999996 788877642                   345566677777777777766


Q ss_pred             EEEe
Q 028656          109 VVVD  112 (206)
Q Consensus       109 ~~~d  112 (206)
                      ....
T Consensus        99 ~~~~  102 (240)
T TIGR02355        99 INAK  102 (240)
T ss_pred             Eecc
Confidence            6543

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.11  E-value=0.004  Score=52.92  Aligned_cols=46  Identities=13%  Similarity=0.243  Sum_probs=40.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~   97 (206)
                      +.+++++|.|+ ||+|+.+++.|+.+|. ++.++.|+.++.+++.+++
T Consensus       179 l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~  225 (414)
T PRK13940        179 ISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAF  225 (414)
T ss_pred             ccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHh
Confidence            56899999999 8999999999999996 7999999988887777665

>PRK08223 hypothetical protein; Validated

Probab=97.11  E-value=0.0051  Score=49.51  Aligned_cols=67  Identities=15%  Similarity=0.271  Sum_probs=52.1

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEE
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIK  107 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~  107 (206)
                      .-++++.+|+|.|+ ||+|..+++.|++.|. ++.++|.+                   ..+.+.+++.+++.++..++.
T Consensus        22 Q~kL~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~  100 (287)
T PRK08223         22 QQRLRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIR  100 (287)
T ss_pred             HHHHhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEE
Confidence            44578999999998 5999999999999996 78888774                   245666677777777888877


Q ss_pred             EEEEecCC
Q 028656          108 SVVVDFSG  115 (206)
Q Consensus       108 ~~~~d~~~  115 (206)
                      .+...+++
T Consensus       101 ~~~~~l~~  108 (287)
T PRK08223        101 AFPEGIGK  108 (287)
T ss_pred             EEecccCc
Confidence            77665553

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.10  E-value=0.0041  Score=51.11  Aligned_cols=44  Identities=25%  Similarity=0.456  Sum_probs=37.4

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~   95 (206)
                      ..|++++|+|++ |+|..-++.....|++|+..+|++++++..++
T Consensus       165 ~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~  208 (339)
T COG1064         165 KPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKK  208 (339)
T ss_pred             CCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence            359999999999 99998777777799999999999988765443

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.10  E-value=0.0087  Score=45.78  Aligned_cols=64  Identities=23%  Similarity=0.401  Sum_probs=46.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC---h---------------hhHHHHHHHHHHhcCCceEEEEE
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN---P---------------DKLKDVSDSIQAKYAKTQIKSVV  110 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~---~---------------~~~~~~~~~~~~~~~~~~~~~~~  110 (206)
                      +++.++++|.|+ ||+|..+++.|++.|. ++++.|++   .               .+.+.+.+.++..++..++....
T Consensus        18 ~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        18 KLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            467899999999 6899999999999998 69999887   2               12333445555555666666555


Q ss_pred             EecC
Q 028656          111 VDFS  114 (206)
Q Consensus       111 ~d~~  114 (206)
                      .+++
T Consensus        97 ~~i~  100 (200)
T TIGR02354        97 EKIT  100 (200)
T ss_pred             eeCC
Confidence            5443

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.09  E-value=0.0062  Score=49.25  Aligned_cols=50  Identities=22%  Similarity=0.307  Sum_probs=40.2

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh---hhHHHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP---DKLKDVSDSIQA   99 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~---~~~~~~~~~~~~   99 (206)
                      .+.++|+++|.|+ ||-+++++..++..|. +|.++.|+.   ++.+++.+++..
T Consensus       120 ~~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~  173 (288)
T PRK12749        120 FDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNE  173 (288)
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhh
Confidence            4467899999998 5669999999999996 899999995   467777666643

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=97.08  E-value=0.01  Score=42.69  Aligned_cols=78  Identities=21%  Similarity=0.413  Sum_probs=54.2

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEEEEEEecC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIKSVVVDFS  114 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~  114 (206)
                      +++|.|+ ||+|.++++.|++.|. ++.++|.+                   ..+.+.+++.+++.+++.++.....+..
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~   79 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS   79 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence            3678887 7999999999999997 68888764                   1455666777777777777777766655


Q ss_pred             CCchHHHHHHHHHhcCCCccEEEEecc
Q 028656          115 GDLDEGVERIKEAIEGLDVGVLINNVG  141 (206)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~id~lvnnAg  141 (206)
                      +.  ..    .+.+.+  .|++|.+..
T Consensus        80 ~~--~~----~~~~~~--~diVi~~~d   98 (143)
T cd01483          80 ED--NL----DDFLDG--VDLVIDAID   98 (143)
T ss_pred             hh--hH----HHHhcC--CCEEEECCC
Confidence            32  11    333344  447877653

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]

Probab=97.07  E-value=0.0015  Score=51.90  Aligned_cols=127  Identities=17%  Similarity=0.147  Sum_probs=81.3

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHC--CCcEEEEEcCh--hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKT--GLNLVLVGRNP--DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~--g~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      .+.++||||.+-||...+..++..  ..+.+.++.-.  ..++. .++.+   ..+...++..|+.++     ..+...+
T Consensus         6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~-l~~~~---n~p~ykfv~~di~~~-----~~~~~~~   76 (331)
T KOG0747|consen    6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKN-LEPVR---NSPNYKFVEGDIADA-----DLVLYLF   76 (331)
T ss_pred             cceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccch-hhhhc---cCCCceEeeccccch-----HHHHhhh
Confidence            388999999999999999999876  45665554321  11222 12221   356678889999887     3333333


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      ..-.+|.++|-|+....-.      +--+--+....|++++..+++...-..   +.. ++|.+|+-..+
T Consensus        77 ~~~~id~vihfaa~t~vd~------s~~~~~~~~~nnil~t~~Lle~~~~sg---~i~-~fvhvSTdeVY  136 (331)
T KOG0747|consen   77 ETEEIDTVIHFAAQTHVDR------SFGDSFEFTKNNILSTHVLLEAVRVSG---NIR-RFVHVSTDEVY  136 (331)
T ss_pred             ccCchhhhhhhHhhhhhhh------hcCchHHHhcCCchhhhhHHHHHHhcc---Cee-EEEEeccccee
Confidence            3335779999987665311      111123457789999999999875421   333 49999986543

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.06  E-value=0.0078  Score=50.46  Aligned_cols=76  Identities=18%  Similarity=0.248  Sum_probs=51.0

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +.++.++|.|+ |.+|+..++.+.+.|++|++++|+.++++.+.+.+     +..   +..+..+.     +.+.+...+
T Consensus       165 l~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~-----g~~---v~~~~~~~-----~~l~~~l~~  230 (370)
T TIGR00518       165 VEPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF-----GGR---IHTRYSNA-----YEIEDAVKR  230 (370)
T ss_pred             CCCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc-----Cce---eEeccCCH-----HHHHHHHcc
Confidence            35677999988 68999999999999999999999987766544332     111   11222222     233344444


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                        .|++|+++++
T Consensus       231 --aDvVI~a~~~  240 (370)
T TIGR00518       231 --ADLLIGAVLI  240 (370)
T ss_pred             --CCEEEEcccc
Confidence              4499998865

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.0015  Score=53.03  Aligned_cols=78  Identities=23%  Similarity=0.267  Sum_probs=58.8

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      ....+|-||+|--|.-+|++++++|.+..+.+||.+++..+.+++..     ..-.+++.+    ..   .+.+...+.+
T Consensus         6 e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~-----~~~~~p~~~----p~---~~~~~~~~~~   73 (382)
T COG3268           6 EYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGP-----EAAVFPLGV----PA---ALEAMASRTQ   73 (382)
T ss_pred             ceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCc-----cccccCCCC----HH---HHHHHHhcce
Confidence            34689999999999999999999999999999999999999888733     233344443    13   3333344445


Q ss_pred             ccEEEEeccccC
Q 028656          133 VGVLINNVGISY  144 (206)
Q Consensus       133 id~lvnnAg~~~  144 (206)
                        +++||+|-..
T Consensus        74 --VVlncvGPyt   83 (382)
T COG3268          74 --VVLNCVGPYT   83 (382)
T ss_pred             --EEEecccccc
Confidence              9999998544

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.05  E-value=0.0083  Score=46.74  Aligned_cols=75  Identities=20%  Similarity=0.374  Sum_probs=50.4

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      +.++|.|+ |-+|.++|+.|.+.|++|+++++++++.++...+      ......+.+|.++.      .+.++.|-.+.
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~------~~~~~~v~gd~t~~------~~L~~agi~~a   67 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD------ELDTHVVIGDATDE------DVLEEAGIDDA   67 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh------hcceEEEEecCCCH------HHHHhcCCCcC
Confidence            35677777 5799999999999999999999999987764331      12345666776664      22233332245


Q ss_pred             cEEEEecc
Q 028656          134 GVLINNVG  141 (206)
Q Consensus       134 d~lvnnAg  141 (206)
                      |++|-..|
T Consensus        68 D~vva~t~   75 (225)
T COG0569          68 DAVVAATG   75 (225)
T ss_pred             CEEEEeeC
Confidence            56665544

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=97.04  E-value=0.0074  Score=48.91  Aligned_cols=80  Identities=25%  Similarity=0.378  Sum_probs=53.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .+.+++|+|+++++|.++++.+..+|++|+.++++.++.+.+ +++     +.. ..  .|..+.  ...+.+.+..++.
T Consensus       142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~-~~~-----g~~-~~--~~~~~~--~~~~~~~~~~~~~  210 (324)
T cd08244         142 PGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALV-RAL-----GAD-VA--VDYTRP--DWPDQVREALGGG  210 (324)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHc-----CCC-EE--EecCCc--cHHHHHHHHcCCC
Confidence            478999999999999999988889999999999988776544 222     111 11  222222  3334455545544


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      ++|+++++.|.
T Consensus       211 ~~d~vl~~~g~  221 (324)
T cd08244         211 GVTVVLDGVGG  221 (324)
T ss_pred             CceEEEECCCh
Confidence            57788887653

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=97.02  E-value=0.028  Score=41.31  Aligned_cols=135  Identities=10%  Similarity=0.017  Sum_probs=78.6

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecC--CCchHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS--GDLDEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~  130 (206)
                      -++|+|-||-+.+|.+++..+..+++-|.-+|..+..-            ...-..++.|.+  +..+...+++-+.+++
T Consensus         3 agrVivYGGkGALGSacv~~FkannywV~siDl~eNe~------------Ad~sI~V~~~~swtEQe~~v~~~vg~sL~g   70 (236)
T KOG4022|consen    3 AGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQ------------ADSSILVDGNKSWTEQEQSVLEQVGSSLQG   70 (236)
T ss_pred             CceEEEEcCcchHhHHHHHHHHhcCeEEEEEeeccccc------------ccceEEecCCcchhHHHHHHHHHHHHhhcc
Confidence            45799999999999999999999999988887765321            111223333333  2224555777777777


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      -++|.+++-||....+...-.+. ...-+-+++-.++....-.+.+-.++   +.|+-+-..+.-++..+.|+
T Consensus        71 ekvDav~CVAGGWAGGnAksKdl-~KNaDLMwKQSvwtSaIsa~lAt~HL---K~GGLL~LtGAkaAl~gTPg  139 (236)
T KOG4022|consen   71 EKVDAVFCVAGGWAGGNAKSKDL-VKNADLMWKQSVWTSAISAKLATTHL---KPGGLLQLTGAKAALGGTPG  139 (236)
T ss_pred             cccceEEEeeccccCCCcchhhh-hhchhhHHHHHHHHHHHHHHHHHhcc---CCCceeeecccccccCCCCc
Confidence            77889999887765322100000 01123344444544444444444444   23441555555566666664

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.02  E-value=0.023  Score=45.31  Aligned_cols=78  Identities=28%  Similarity=0.412  Sum_probs=53.6

Q ss_pred             EEEECCCChHHHHHHHHHHHCC----CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTG----LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      +.|.||+|.+|..++..++..|    .+|++.|+++++++....+++......  ....+..+++       ..+.+.+ 
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~--~~~~i~~~~d-------~~~~~~~-   70 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL--ADIKVSITDD-------PYEAFKD-   70 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc--cCcEEEECCc-------hHHHhCC-
Confidence            4689998899999999999988    689999999988888887776532111  1112222222       2233444 


Q ss_pred             CccEEEEeccccC
Q 028656          132 DVGVLINNVGISY  144 (206)
Q Consensus       132 ~id~lvnnAg~~~  144 (206)
                       -|++|..+|...
T Consensus        71 -aDiVv~t~~~~~   82 (263)
T cd00650          71 -ADVVIITAGVGR   82 (263)
T ss_pred             -CCEEEECCCCCC
Confidence             448999998754

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.02  E-value=0.0078  Score=48.54  Aligned_cols=42  Identities=17%  Similarity=0.265  Sum_probs=37.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      ++++++|+|+++++|.++++.+..+|+++++++++.++.+.+
T Consensus       144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~  185 (328)
T cd08268         144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDAL  185 (328)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            478999999999999999999999999999999987765544

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.96  E-value=0.016  Score=43.29  Aligned_cols=58  Identities=22%  Similarity=0.446  Sum_probs=43.7

Q ss_pred             EEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh------------------hhHHHHHHHHHHhcCCceEEEEEEecC
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP------------------DKLKDVSDSIQAKYAKTQIKSVVVDFS  114 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~  114 (206)
                      |+|.|+ ||+|..+++.|++.|. ++.+.|.+.                  .+.+...+.+++.++..++......+.
T Consensus         2 VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~   78 (174)
T cd01487           2 VGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKID   78 (174)
T ss_pred             EEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC
Confidence            677886 7999999999999998 599998874                  344555666667667777766655544

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=96.95  E-value=0.0094  Score=48.51  Aligned_cols=43  Identities=14%  Similarity=0.164  Sum_probs=37.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS   94 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~   94 (206)
                      .+++++|.|+++++|.++++.+.+.|++|+.++++.++.+.+.
T Consensus       145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~  187 (329)
T cd05288         145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLV  187 (329)
T ss_pred             CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            4789999999999999999999999999999999887665443

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.92  E-value=0.0024  Score=55.34  Aligned_cols=48  Identities=19%  Similarity=0.354  Sum_probs=40.9

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~   97 (206)
                      .++++++++|+|+ ||+|+++++.+++.|++|.+.+|+.++.+++.+++
T Consensus       328 ~~~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~  375 (477)
T PRK09310        328 IPLNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKAHAEALASRC  375 (477)
T ss_pred             CCcCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence            4467899999997 69999999999999999999999988777665543

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=96.90  E-value=0.009  Score=49.61  Aligned_cols=81  Identities=27%  Similarity=0.359  Sum_probs=53.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .+|+.+||.||++|+|.+.++-....|+..+++.++.++.+- .+++    +...  .  .|-.+  ++..+.+.+.. .
T Consensus       156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l-~k~l----GAd~--v--vdy~~--~~~~e~~kk~~-~  223 (347)
T KOG1198|consen  156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLEL-VKKL----GADE--V--VDYKD--ENVVELIKKYT-G  223 (347)
T ss_pred             CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHH-HHHc----CCcE--e--ecCCC--HHHHHHHHhhc-C
Confidence            468999999999999999888888888666666666655432 2222    2221  2  33333  25556665554 3


Q ss_pred             CCccEEEEecccc
Q 028656          131 LDVGVLINNVGIS  143 (206)
Q Consensus       131 ~~id~lvnnAg~~  143 (206)
                      ..+|+++-|.|-.
T Consensus       224 ~~~DvVlD~vg~~  236 (347)
T KOG1198|consen  224 KGVDVVLDCVGGS  236 (347)
T ss_pred             CCccEEEECCCCC
Confidence            3577999998863

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=96.88  E-value=0.007  Score=48.69  Aligned_cols=80  Identities=18%  Similarity=0.280  Sum_probs=56.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|++|+++.|.-..+--.-+|++|+.+.-.+++..-+.+++.   .+.     -.|-.++  +..+.+.+..++ 
T Consensus       150 ~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lG---fD~-----~idyk~~--d~~~~L~~a~P~-  218 (340)
T COG2130         150 AGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELG---FDA-----GIDYKAE--DFAQALKEACPK-  218 (340)
T ss_pred             CCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcC---Cce-----eeecCcc--cHHHHHHHHCCC-
Confidence            39999999999999976555444589999999999988776665541   111     1233333  555667766664 


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|+.+-|.|-
T Consensus       219 GIDvyfeNVGg  229 (340)
T COG2130         219 GIDVYFENVGG  229 (340)
T ss_pred             CeEEEEEcCCc
Confidence            57799999873

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=96.86  E-value=0.0098  Score=48.34  Aligned_cols=42  Identities=33%  Similarity=0.452  Sum_probs=37.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .+++++|+||++++|.++++.+...|.+|+.++++.++.+.+
T Consensus       162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~  203 (332)
T cd08259         162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKIL  203 (332)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence            478999999999999999999999999999999887665443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.86  E-value=0.0035  Score=46.55  Aligned_cols=44  Identities=20%  Similarity=0.324  Sum_probs=37.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKD   92 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~   92 (206)
                      .+++||+++|.|++.-.|..+++.|.++|++|.++.|+.+.+.+
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~   83 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKE   83 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHH
Confidence            35779999999997667999999999999999999998765544

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.85  E-value=0.015  Score=48.80  Aligned_cols=66  Identities=17%  Similarity=0.314  Sum_probs=50.7

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEE
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIK  107 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~  107 (206)
                      .-++++.+|+|.|+ ||+|..+++.|++.|. ++.++|.+                   ..+.+.+++.+++.+++.++.
T Consensus        36 q~~l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~  114 (370)
T PRK05600         36 QERLHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVN  114 (370)
T ss_pred             HHHhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeE
Confidence            34477889999988 5999999999999996 89998875                   245666677777777777777


Q ss_pred             EEEEecC
Q 028656          108 SVVVDFS  114 (206)
Q Consensus       108 ~~~~d~~  114 (206)
                      .....++
T Consensus       115 ~~~~~i~  121 (370)
T PRK05600        115 ALRERLT  121 (370)
T ss_pred             EeeeecC
Confidence            6665443

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=96.84  E-value=0.032  Score=45.65  Aligned_cols=117  Identities=20%  Similarity=0.307  Sum_probs=65.0

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC--cEEEEEcCh--hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNP--DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      ++.|.|++|.+|..++..++..|.  +|++++|+.  ++++..+.++.......... ..+..+++        .+.+.+
T Consensus         2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~-~~i~~~~d--------~~~l~~   72 (309)
T cd05294           2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGID-AEIKISSD--------LSDVAG   72 (309)
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCC-cEEEECCC--------HHHhCC
Confidence            689999999999999999999986  499999965  55555444443210000000 11222211        112343


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                        -|++|.++|....     ...+.   .+.++.|..    +.+.+.+.+.+......++++++
T Consensus        73 --aDiViitag~p~~-----~~~~r---~dl~~~n~~----i~~~~~~~i~~~~~~~~viv~~n  122 (309)
T cd05294          73 --SDIVIITAGVPRK-----EGMSR---LDLAKKNAK----IVKKYAKQIAEFAPDTKILVVTN  122 (309)
T ss_pred             --CCEEEEecCCCCC-----CCCCH---HHHHHHHHH----HHHHHHHHHHHHCCCeEEEEeCC
Confidence              4489999987432     12232   233455555    44444444443333332777766

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=96.84  E-value=0.011  Score=51.04  Aligned_cols=78  Identities=17%  Similarity=0.204  Sum_probs=54.4

Q ss_pred             ccCCcEEEEECC----------------CChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEec
Q 028656           50 RKYGSWALVTGP----------------TDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF  113 (206)
Q Consensus        50 ~~~~k~vlItGa----------------s~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~  113 (206)
                      +++||+++||+|                ||-+|.++|+++..+|++|.+++-+..-        .   ....+..+.++-
T Consensus       253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~--------~---~p~~v~~i~V~t  321 (475)
T PRK13982        253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDL--------A---DPQGVKVIHVES  321 (475)
T ss_pred             ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCC--------C---CCCCceEEEecC
Confidence            367999999976                5789999999999999999999854321        0   122244444432


Q ss_pred             CCCchHHHHHHHHHhcCCCccEEEEeccccC
Q 028656          114 SGDLDEGVERIKEAIEGLDVGVLINNVGISY  144 (206)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~id~lvnnAg~~~  144 (206)
                         .++..+.+.+.++   .|++|.+|+++.
T Consensus       322 ---a~eM~~av~~~~~---~Di~I~aAAVaD  346 (475)
T PRK13982        322 ---ARQMLAAVEAALP---ADIAIFAAAVAD  346 (475)
T ss_pred             ---HHHHHHHHHhhCC---CCEEEEeccccc
Confidence               2355566655554   359999998864

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=96.83  E-value=0.014  Score=47.41  Aligned_cols=79  Identities=20%  Similarity=0.357  Sum_probs=53.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|.+++|.|+++++|.+.++.....|++++.+.++.++.+.+.+ +   + -.  ..+  +..+.  ...+.+.+..++.
T Consensus       139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~---g-~~--~~~--~~~~~--~~~~~i~~~~~~~  207 (324)
T cd08292         139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA-L---G-IG--PVV--STEQP--GWQDKVREAAGGA  207 (324)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh-c---C-CC--EEE--cCCCc--hHHHHHHHHhCCC
Confidence            47899999999999999999888999999999888876555432 1   1 11  111  11221  3334455555544


Q ss_pred             CccEEEEecc
Q 028656          132 DVGVLINNVG  141 (206)
Q Consensus       132 ~id~lvnnAg  141 (206)
                      ++|+++++.|
T Consensus       208 ~~d~v~d~~g  217 (324)
T cd08292         208 PISVALDSVG  217 (324)
T ss_pred             CCcEEEECCC
Confidence            5678888765

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=96.80  E-value=0.0019  Score=40.92  Aligned_cols=36  Identities=25%  Similarity=0.303  Sum_probs=22.9

Q ss_pred             CC-cEEEEECCCChHHHHHHHHHH-HCCCcEEEEEcCh
Q 028656           52 YG-SWALVTGPTDGIGKSFAFQLA-KTGLNLVLVGRNP   87 (206)
Q Consensus        52 ~~-k~vlItGas~giG~~~a~~l~-~~g~~V~~~~r~~   87 (206)
                      +| |+|||+|+|+|.|++-.-.++ ..|++.+-++...
T Consensus        37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk   74 (78)
T PF12242_consen   37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK   74 (78)
T ss_dssp             TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred             CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence            45 899999999999999444444 5677777776543

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.80  E-value=0.019  Score=44.97  Aligned_cols=64  Identities=20%  Similarity=0.309  Sum_probs=48.8

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh-------------------hhHHHHHHHHHHhcCCceEEEE
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP-------------------DKLKDVSDSIQAKYAKTQIKSV  109 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~  109 (206)
                      ++++.+++|.|. ||+|..+++.|++.|. +++++|.+.                   .+.+..++.+++.+|+.++...
T Consensus         8 ~L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~   86 (231)
T cd00755           8 KLRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAV   86 (231)
T ss_pred             HHhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence            356888999988 5999999999999997 788887642                   3555667777777777777766


Q ss_pred             EEecC
Q 028656          110 VVDFS  114 (206)
Q Consensus       110 ~~d~~  114 (206)
                      ...+.
T Consensus        87 ~~~i~   91 (231)
T cd00755          87 EEFLT   91 (231)
T ss_pred             eeecC
Confidence            65443

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.78  E-value=0.015  Score=47.54  Aligned_cols=91  Identities=14%  Similarity=0.144  Sum_probs=53.6

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHH---HH--HHHHHHhcCCceEEEEEEecCCCchHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK---DV--SDSIQAKYAKTQIKSVVVDFSGDLDEGVER  123 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~---~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  123 (206)
                      ..++||++.|.|- |.||+++|+.+...|++|...+|..+...   ..  ..++.+.-.+..+..+.+-.+++....+. 
T Consensus       132 ~~l~g~tvgIvG~-G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~-  209 (312)
T PRK15469        132 YHREDFTIGILGA-GVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIIN-  209 (312)
T ss_pred             CCcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhH-
Confidence            3578999999987 58999999999999999999988653311   10  11222222345555555555544333332 


Q ss_pred             HHHHhcCCCccEEEEeccc
Q 028656          124 IKEAIEGLDVGVLINNVGI  142 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~  142 (206)
                       .+.+...+.+.++-|.|.
T Consensus       210 -~~~l~~mk~ga~lIN~aR  227 (312)
T PRK15469        210 -QQLLEQLPDGAYLLNLAR  227 (312)
T ss_pred             -HHHHhcCCCCcEEEECCC
Confidence             122333333345555544

>PLN02928 oxidoreductase family protein

Probab=96.78  E-value=0.014  Score=48.59  Aligned_cols=37  Identities=24%  Similarity=0.355  Sum_probs=33.9

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .++||++.|.|. |.||+++|+.+...|++|+..+|+.
T Consensus       156 ~l~gktvGIiG~-G~IG~~vA~~l~afG~~V~~~dr~~  192 (347)
T PLN02928        156 TLFGKTVFILGY-GAIGIELAKRLRPFGVKLLATRRSW  192 (347)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCC
Confidence            478999999998 6999999999999999999999863

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.76  E-value=0.0092  Score=46.79  Aligned_cols=41  Identities=24%  Similarity=0.304  Sum_probs=35.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .+++++|+|+++ +|.++++.+...|.+|+.+++++++.+.+
T Consensus       134 ~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~  174 (271)
T cd05188         134 PGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELA  174 (271)
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence            578999999998 99999998888999999999987665443

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=96.76  E-value=0.014  Score=47.67  Aligned_cols=59  Identities=19%  Similarity=0.323  Sum_probs=44.4

Q ss_pred             EEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      |+|.|+ ||+|.++++.|+..|. ++.++|.+                   ..+.+.+++.+++.++..++.....++.+
T Consensus         2 VlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~   80 (312)
T cd01489           2 VLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD   80 (312)
T ss_pred             EEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence            678887 7999999999999996 78888764                   23455566777777777777776666654

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.75  E-value=0.016  Score=44.19  Aligned_cols=66  Identities=18%  Similarity=0.322  Sum_probs=49.6

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEE
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIK  107 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~  107 (206)
                      .-++++++|+|.|+ +|+|.++++.|+..|. ++.++|.+                   ..+.+.+++.+++.+|+.++.
T Consensus        16 Q~~L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~   94 (197)
T cd01492          16 QKRLRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVS   94 (197)
T ss_pred             HHHHHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEE
Confidence            34477889999986 5699999999999997 68888754                   134566677788888888777


Q ss_pred             EEEEecC
Q 028656          108 SVVVDFS  114 (206)
Q Consensus       108 ~~~~d~~  114 (206)
                      .....+.
T Consensus        95 ~~~~~~~  101 (197)
T cd01492          95 VDTDDIS  101 (197)
T ss_pred             EEecCcc
Confidence            6654443

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.73  E-value=0.0048  Score=49.89  Aligned_cols=44  Identities=20%  Similarity=0.271  Sum_probs=38.2

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKD   92 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~   92 (206)
                      ..+++|++++|.|. |++|+++++.+...|++|.+.+|+.++.+.
T Consensus       146 ~~~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~  189 (287)
T TIGR02853       146 DFTIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLAR  189 (287)
T ss_pred             CCCCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            34678999999999 579999999999999999999999876443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK07411 hypothetical protein; Validated

Probab=96.73  E-value=0.016  Score=48.86  Aligned_cols=65  Identities=20%  Similarity=0.289  Sum_probs=51.0

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEEE
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIKS  108 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~  108 (206)
                      -++++.+|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+.+++.+++.++..++..
T Consensus        34 ~~L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~  112 (390)
T PRK07411         34 KRLKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDL  112 (390)
T ss_pred             HHHhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEE
Confidence            3577899999998 5999999999999997 78888764                   2456667788888888887777


Q ss_pred             EEEecC
Q 028656          109 VVVDFS  114 (206)
Q Consensus       109 ~~~d~~  114 (206)
                      +...++
T Consensus       113 ~~~~~~  118 (390)
T PRK07411        113 YETRLS  118 (390)
T ss_pred             EecccC
Confidence            765554

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=96.73  E-value=0.019  Score=47.08  Aligned_cols=41  Identities=20%  Similarity=0.250  Sum_probs=34.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCc-EEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLN-LVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~-V~~~~r~~~~~~~~   93 (206)
                      .|++++|+|+ +++|...++.+...|++ |+++++++++.+.+
T Consensus       163 ~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~  204 (339)
T cd08239         163 GRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELA  204 (339)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            3889999986 89999999888889998 99999988776543

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=96.73  E-value=0.019  Score=47.92  Aligned_cols=80  Identities=23%  Similarity=0.201  Sum_probs=49.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|+|+ +++|...++.....|+ +|+.+++++++++.+. ++   + ...  .  .|..+..+...+.+.+..++
T Consensus       185 ~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~-~~---G-a~~--~--i~~~~~~~~~~~~v~~~~~~  254 (368)
T TIGR02818       185 EGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPAKFELAK-KL---G-ATD--C--VNPNDYDKPIQEVIVEITDG  254 (368)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hh---C-CCe--E--EcccccchhHHHHHHHHhCC
Confidence            4789999985 8999998888888898 7999999888766542 22   1 111  1  12222111222334333333


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                       .+|+++.++|.
T Consensus       255 -g~d~vid~~G~  265 (368)
T TIGR02818       255 -GVDYSFECIGN  265 (368)
T ss_pred             -CCCEEEECCCC
Confidence             46688888763

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.72  E-value=0.027  Score=46.52  Aligned_cols=38  Identities=21%  Similarity=0.315  Sum_probs=34.6

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD   88 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~   88 (206)
                      +++||++.|.|. |.||+++|+.+...|++|+..+|+..
T Consensus       147 ~L~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  184 (333)
T PRK13243        147 DVYGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTRK  184 (333)
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            478999999999 79999999999999999999998754

>PLN02740 Alcohol dehydrogenase-like

Probab=96.72  E-value=0.019  Score=48.20  Aligned_cols=80  Identities=21%  Similarity=0.252  Sum_probs=51.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|.|+ +++|...++.....|+ +|+.+++++++++.+.+ +     +.. ..+  |..+..+...+.+.+..++
T Consensus       198 ~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~-~-----Ga~-~~i--~~~~~~~~~~~~v~~~~~~  267 (381)
T PLN02740        198 AGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDINPEKFEKGKE-M-----GIT-DFI--NPKDSDKPVHERIREMTGG  267 (381)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH-c-----CCc-EEE--ecccccchHHHHHHHHhCC
Confidence            5889999986 8999999888888999 69999998887665432 2     111 112  2222111223344443343


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                       .+|+++.++|.
T Consensus       268 -g~dvvid~~G~  278 (381)
T PLN02740        268 -GVDYSFECAGN  278 (381)
T ss_pred             -CCCEEEECCCC
Confidence             46688888774

>PRK14968 putative methyltransferase; Provisional

Probab=96.70  E-value=0.081  Score=39.40  Aligned_cols=79  Identities=22%  Similarity=0.239  Sum_probs=52.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCce-EEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQ-IKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      ++++++-.|++.|.   ++..+++++.+|+.++++++..+...+.+...+...+ +.+..+|..+..           .+
T Consensus        23 ~~~~vLd~G~G~G~---~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-----------~~   88 (188)
T PRK14968         23 KGDRVLEVGTGSGI---VAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-----------RG   88 (188)
T ss_pred             CCCEEEEEccccCH---HHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc-----------cc
Confidence            47788888888765   5566666689999999999888777777655432222 666666764321           11


Q ss_pred             CCccEEEEeccccC
Q 028656          131 LDVGVLINNVGISY  144 (206)
Q Consensus       131 ~~id~lvnnAg~~~  144 (206)
                      ...|.++.|.....
T Consensus        89 ~~~d~vi~n~p~~~  102 (188)
T PRK14968         89 DKFDVILFNPPYLP  102 (188)
T ss_pred             cCceEEEECCCcCC
Confidence            14668998876543

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=96.70  E-value=0.019  Score=44.95  Aligned_cols=58  Identities=16%  Similarity=0.310  Sum_probs=42.5

Q ss_pred             EEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh-------------------hhHHHHHHHHHHhcCCceEEEEEEecC
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP-------------------DKLKDVSDSIQAKYAKTQIKSVVVDFS  114 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~  114 (206)
                      ++|.|+ ||+|.++++.|+..|. ++.++|.+.                   .+.+.+++.+++.+++.++.....++.
T Consensus         2 VlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~   79 (234)
T cd01484           2 VLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG   79 (234)
T ss_pred             EEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            677775 6999999999999996 788887752                   344455666667777777777666654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.67  E-value=0.03  Score=44.75  Aligned_cols=60  Identities=22%  Similarity=0.238  Sum_probs=45.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCC-CcEEEEEcCh-------------------hhHHHHHHHHHHhcCCceEEEE
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNP-------------------DKLKDVSDSIQAKYAKTQIKSV  109 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g-~~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~  109 (206)
                      ++++.+|+|.|+ ||+|..+++.|++.| .++.++|.+.                   .+.+..++.+.+.+++.++..+
T Consensus        27 kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i  105 (268)
T PRK15116         27 LFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVV  105 (268)
T ss_pred             HhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEE
Confidence            467889999988 599999999999999 5888887651                   2344556677777777766655


Q ss_pred             E
Q 028656          110 V  110 (206)
Q Consensus       110 ~  110 (206)
                      +
T Consensus       106 ~  106 (268)
T PRK15116        106 D  106 (268)
T ss_pred             e
Confidence            3

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.67  E-value=0.028  Score=42.86  Aligned_cols=65  Identities=15%  Similarity=0.219  Sum_probs=47.9

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh---------------------hhHHHHHHHHHHhcCCceE
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP---------------------DKLKDVSDSIQAKYAKTQI  106 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~---------------------~~~~~~~~~~~~~~~~~~~  106 (206)
                      -++++.+|+|.|++ |+|.++++.|+..|. ++.++|.+.                     .+.+.+++.+++.+|+.++
T Consensus        15 ~~L~~s~VlviG~g-glGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i   93 (198)
T cd01485          15 NKLRSAKVLIIGAG-ALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKL   93 (198)
T ss_pred             HHHhhCcEEEECCC-HHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEE
Confidence            34668889999886 699999999999997 588887641                     2344456667777788877


Q ss_pred             EEEEEecC
Q 028656          107 KSVVVDFS  114 (206)
Q Consensus       107 ~~~~~d~~  114 (206)
                      .....+..
T Consensus        94 ~~~~~~~~  101 (198)
T cd01485          94 SIVEEDSL  101 (198)
T ss_pred             EEEecccc
Confidence            77665543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK08328 hypothetical protein; Provisional

Probab=96.65  E-value=0.027  Score=44.02  Aligned_cols=38  Identities=24%  Similarity=0.446  Sum_probs=32.0

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN   86 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~   86 (206)
                      .-++++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus        22 q~~L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         22 QEKLKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             HHHHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            34467889999998 4999999999999996 78888765

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.65  E-value=0.069  Score=44.08  Aligned_cols=65  Identities=22%  Similarity=0.174  Sum_probs=44.6

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH---HHHHHhcCCceEEEEEEecCC
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS---DSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      .++|+++.|.|. |.||+++|+.+...|++|+..+|+.+......   ..+.+...+..+..+.+-.+.
T Consensus       143 ~l~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~  210 (330)
T PRK12480        143 PVKNMTVAIIGT-GRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANK  210 (330)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcH
Confidence            478999999987 57999999999999999999999875432211   122222234455555555443

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=96.63  E-value=0.02  Score=46.35  Aligned_cols=79  Identities=20%  Similarity=0.411  Sum_probs=51.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|.+++|.|+++++|.++++.+..+|++++++.++.++.+.+ +++   +. ..  .+  +..+  ....+.+.+..++.
T Consensus       138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~---g~-~~--~~--~~~~--~~~~~~~~~~~~~~  206 (323)
T cd05282         138 PGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEEL-KAL---GA-DE--VI--DSSP--EDLAQRVKEATGGA  206 (323)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHH-Hhc---CC-CE--Ee--cccc--hhHHHHHHHHhcCC
Confidence            578999999999999999999999999999999888765443 222   11 11  11  1111  13334444444444


Q ss_pred             CccEEEEecc
Q 028656          132 DVGVLINNVG  141 (206)
Q Consensus       132 ~id~lvnnAg  141 (206)
                      .+|+++++.|
T Consensus       207 ~~d~vl~~~g  216 (323)
T cd05282         207 GARLALDAVG  216 (323)
T ss_pred             CceEEEECCC
Confidence            5678888754

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.63  E-value=0.013  Score=47.80  Aligned_cols=38  Identities=24%  Similarity=0.272  Sum_probs=33.7

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      ..++||++.|.|- |.||+++|+.+...|++|+..+|+.
T Consensus       118 ~~L~gktvgIiG~-G~IG~~vA~~l~afG~~V~~~~r~~  155 (303)
T PRK06436        118 KLLYNKSLGILGY-GGIGRRVALLAKAFGMNIYAYTRSY  155 (303)
T ss_pred             CCCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCC
Confidence            3588999999998 6899999998888999999999864

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.60  E-value=0.032  Score=45.86  Aligned_cols=119  Identities=13%  Similarity=0.149  Sum_probs=66.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCC-CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +.+.+.|.|| |.+|..++..++..| .++++.|++++..+....++......... ....-.+++       . +.+.+
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~-~~~i~~~~d-------~-~~l~~   73 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGS-NINILGTNN-------Y-EDIKD   73 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCC-CeEEEeCCC-------H-HHhCC
Confidence            4568999997 889999999999988 68999999987655433333221000000 001111111       1 13333


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                        -|++|.++|.....     ..+.   ...+..|.    .+.+.+.+.+.+.....-++++|.
T Consensus        74 --ADiVVitag~~~~~-----g~~r---~dll~~n~----~i~~~i~~~i~~~~p~a~vivvsN  123 (319)
T PTZ00117         74 --SDVVVITAGVQRKE-----EMTR---EDLLTING----KIMKSVAESVKKYCPNAFVICVTN  123 (319)
T ss_pred             --CCEEEECCCCCCCC-----CCCH---HHHHHHHH----HHHHHHHHHHHHHCCCeEEEEecC
Confidence              44999999875431     2232   23445555    355566665655443332555544

>PLN00203 glutamyl-tRNA reductase

Probab=96.60  E-value=0.016  Score=50.69  Aligned_cols=46  Identities=22%  Similarity=0.439  Sum_probs=40.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~   97 (206)
                      +.+++++|.|+ |++|+.+++.|..+|. +|+++.|+.++.+++.+++
T Consensus       264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~  310 (519)
T PLN00203        264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF  310 (519)
T ss_pred             CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Confidence            56899999999 8999999999999997 7999999998887776654

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=96.60  E-value=0.028  Score=45.85  Aligned_cols=78  Identities=17%  Similarity=0.300  Sum_probs=49.1

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      +++++++||++++|...++.....|++|+.+++++++.+.+.+ +    +...  .+  |..+.  +..+.+.+..++..
T Consensus       144 ~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~-~----g~~~--~i--~~~~~--~~~~~v~~~~~~~~  212 (324)
T cd08291         144 AKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK-I----GAEY--VL--NSSDP--DFLEDLKELIAKLN  212 (324)
T ss_pred             CcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c----CCcE--EE--ECCCc--cHHHHHHHHhCCCC
Confidence            4555556999999999887777789999999998877655432 2    1111  12  22222  33344555444435


Q ss_pred             ccEEEEecc
Q 028656          133 VGVLINNVG  141 (206)
Q Consensus       133 id~lvnnAg  141 (206)
                      +|+++++.|
T Consensus       213 ~d~vid~~g  221 (324)
T cd08291         213 ATIFFDAVG  221 (324)
T ss_pred             CcEEEECCC
Confidence            678888765

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=96.59  E-value=0.02  Score=47.78  Aligned_cols=79  Identities=20%  Similarity=0.227  Sum_probs=50.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|.|+ +++|...++.+...|+ +|+.+++++++++.+ +++   + ...  .+  |..+..++..+.+.+..++
T Consensus       186 ~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~-~~l---G-a~~--~i--~~~~~~~~~~~~v~~~~~~  255 (368)
T cd08300         186 PGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDINPDKFELA-KKF---G-ATD--CV--NPKDHDKPIQQVLVEMTDG  255 (368)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHc---C-CCE--EE--cccccchHHHHHHHHHhCC
Confidence            4889999975 8999999888888999 699999998876644 222   1 111  12  2222111233444433343


Q ss_pred             CCccEEEEecc
Q 028656          131 LDVGVLINNVG  141 (206)
Q Consensus       131 ~~id~lvnnAg  141 (206)
                       .+|+++.+.|
T Consensus       256 -g~d~vid~~g  265 (368)
T cd08300         256 -GVDYTFECIG  265 (368)
T ss_pred             -CCcEEEECCC
Confidence             5678888876

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.57  E-value=0.0082  Score=43.21  Aligned_cols=46  Identities=20%  Similarity=0.270  Sum_probs=40.0

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      ..+++||.++|.|.+.-.|+.++..|.++|++|.++.++...+++.
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~   68 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSK   68 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHH
Confidence            4578899999999999999999999999999999998766555543

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=96.57  E-value=0.025  Score=45.28  Aligned_cols=42  Identities=17%  Similarity=0.166  Sum_probs=36.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .|++++|.|+++++|.+.++.....|++|+.+++++++.+.+
T Consensus       136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~  177 (320)
T cd05286         136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELA  177 (320)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            478999999999999999998889999999999888765544

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=96.56  E-value=0.025  Score=46.96  Aligned_cols=79  Identities=28%  Similarity=0.390  Sum_probs=50.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCc-EEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLN-LVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|.|+ +++|...++.....|++ |+.+++++++.+.+. ++    +...  .  .|..++  +..+.+.+..++
T Consensus       176 ~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~-~~----Ga~~--~--i~~~~~--~~~~~i~~~~~~  243 (358)
T TIGR03451       176 RGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR-EF----GATH--T--VNSSGT--DPVEAIRALTGG  243 (358)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hc----CCce--E--EcCCCc--CHHHHHHHHhCC
Confidence            4789999985 89999998888888985 888989887765542 22    1111  1  122222  333444444443


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                      ..+|+++.+.|.
T Consensus       244 ~g~d~vid~~g~  255 (358)
T TIGR03451       244 FGADVVIDAVGR  255 (358)
T ss_pred             CCCCEEEECCCC
Confidence            346688888763

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=96.55  E-value=0.026  Score=47.74  Aligned_cols=64  Identities=23%  Similarity=0.307  Sum_probs=48.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEEEE
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIKSV  109 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~  109 (206)
                      ++++.+|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+.+++.+++.++..++...
T Consensus        39 ~L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~  117 (392)
T PRK07878         39 RLKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH  117 (392)
T ss_pred             HHhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence            467889999988 5999999999999997 78888764                   13455566777777777777666


Q ss_pred             EEecC
Q 028656          110 VVDFS  114 (206)
Q Consensus       110 ~~d~~  114 (206)
                      ...+.
T Consensus       118 ~~~i~  122 (392)
T PRK07878        118 EFRLD  122 (392)
T ss_pred             eccCC
Confidence            54443

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=96.55  E-value=0.032  Score=45.37  Aligned_cols=42  Identities=19%  Similarity=0.274  Sum_probs=36.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .|.+++|.|+++++|.++++....+|++++++.++.++.+.+
T Consensus       140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~  181 (334)
T PTZ00354        140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFC  181 (334)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            478999999999999999999999999988888887765554

>PRK06487 glycerate dehydrogenase; Provisional

Probab=96.55  E-value=0.014  Score=47.82  Aligned_cols=37  Identities=14%  Similarity=0.083  Sum_probs=33.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .++||++.|.|- |.||+++|+.+...|++|+..+|..
T Consensus       145 ~l~gktvgIiG~-G~IG~~vA~~l~~fgm~V~~~~~~~  181 (317)
T PRK06487        145 ELEGKTLGLLGH-GELGGAVARLAEAFGMRVLIGQLPG  181 (317)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCC
Confidence            578999999998 6999999999999999999988753

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=96.53  E-value=0.028  Score=45.86  Aligned_cols=116  Identities=21%  Similarity=0.329  Sum_probs=67.8

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      +.|.|+|+ |++|.+++..++.++.  .+++.|.+++..+..+.++....+   .......+..+     .. .+.+.  
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~---~~~~~~~i~~~-----~~-y~~~~--   68 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAA---PLGSDVKITGD-----GD-YEDLK--   68 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcch---hccCceEEecC-----CC-hhhhc--
Confidence            35889999 9999999999987763  799999997777766666654211   11111122211     00 22233  


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      +-|++|-.||....+.     ++.+   +.++.|..    +.+...+.+.+..... ++.+.|
T Consensus        69 ~aDiVvitAG~prKpG-----mtR~---DLl~~Na~----I~~~i~~~i~~~~~d~-ivlVvt  118 (313)
T COG0039          69 GADIVVITAGVPRKPG-----MTRL---DLLEKNAK----IVKDIAKAIAKYAPDA-IVLVVT  118 (313)
T ss_pred             CCCEEEEeCCCCCCCC-----CCHH---HHHHhhHH----HHHHHHHHHHhhCCCe-EEEEec
Confidence            3459999999865421     3333   34566665    4444444444444444 444443

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.53  E-value=0.01  Score=44.63  Aligned_cols=43  Identities=26%  Similarity=0.482  Sum_probs=34.7

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQ   98 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~   98 (206)
                      +|.|.|+ |-+|+.+|..++..|++|.+.+++++.+++..+.++
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~   43 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALERARKRIE   43 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHH
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHH
Confidence            4678888 799999999999999999999999987776655543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.52  E-value=0.03  Score=45.88  Aligned_cols=79  Identities=22%  Similarity=0.372  Sum_probs=52.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .+.+++|.|+++++|.++++.+.+.|.+|+.+.+++++.+.+ +++   + ...+    .+..+.  +..+++.+..++.
T Consensus       165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~---g-~~~v----~~~~~~--~~~~~~~~~~~~~  233 (341)
T cd08297         165 PGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELA-KEL---G-ADAF----VDFKKS--DDVEAVKELTGGG  233 (341)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HHc---C-CcEE----EcCCCc--cHHHHHHHHhcCC
Confidence            478999999999999999999999999999999998765543 222   1 1111    122222  3334455544444


Q ss_pred             CccEEEEecc
Q 028656          132 DVGVLINNVG  141 (206)
Q Consensus       132 ~id~lvnnAg  141 (206)
                      .+|+++++.+
T Consensus       234 ~vd~vl~~~~  243 (341)
T cd08297         234 GAHAVVVTAV  243 (341)
T ss_pred             CCCEEEEcCC
Confidence            5778887543

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=96.52  E-value=0.029  Score=45.02  Aligned_cols=42  Identities=21%  Similarity=0.283  Sum_probs=36.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .+++++|+|+++++|.++++.+...|++|+.++++.++.+.+
T Consensus       139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~  180 (323)
T cd08241         139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALA  180 (323)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHH
Confidence            478999999999999999999999999999999987765543

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=96.51  E-value=0.027  Score=46.08  Aligned_cols=89  Identities=17%  Similarity=0.169  Sum_probs=53.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHH--HHHHHHHhcCCceEEEEEEecCCCchHHH-HHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKD--VSDSIQAKYAKTQIKSVVVDFSGDLDEGV-ERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~  126 (206)
                      +++||++.|.|- |.||+++|+.+...|++|+..+|.......  ....+.+......+..+.+-.+++-...+ ++..+
T Consensus       142 ~L~gktvGIiG~-G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~  220 (311)
T PRK08410        142 EIKGKKWGIIGL-GTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELK  220 (311)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHH
Confidence            578999999998 699999999999999999999885321100  00122222234556666666665432233 33344


Q ss_pred             HhcCCCccEEEEeccc
Q 028656          127 AIEGLDVGVLINNVGI  142 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~  142 (206)
                      ..+.   +.++-|.|.
T Consensus       221 ~Mk~---~a~lIN~aR  233 (311)
T PRK08410        221 LLKD---GAILINVGR  233 (311)
T ss_pred             hCCC---CeEEEECCC
Confidence            4443   244444443

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=96.50  E-value=0.0072  Score=48.35  Aligned_cols=50  Identities=14%  Similarity=0.308  Sum_probs=45.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKY  101 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~  101 (206)
                      +|.+++--||+|+.|+++.+-....|.+-+-+-|+.+..++++++++..+
T Consensus       160 ~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lG  209 (354)
T KOG0025|consen  160 KGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLG  209 (354)
T ss_pred             CCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcC
Confidence            47799999999999999988888899999999999999999999998864

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=96.49  E-value=0.04  Score=45.07  Aligned_cols=116  Identities=18%  Similarity=0.283  Sum_probs=66.0

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      ++.|+|++|.+|.++|..++.+|.  +++++|.+  +.+..+.+++......++..  .. .+      +...+.+.+  
T Consensus         2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~--~~-~~------~~~y~~~~d--   68 (310)
T cd01337           2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTG--YL-GP------EELKKALKG--   68 (310)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEE--ec-CC------CchHHhcCC--
Confidence            578999999999999999998884  79999998  44444444543211111111  10 11      112233443  


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKA  195 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~  195 (206)
                      -|++|.+||.....     ..+.   .+.++.|..    +.+...+.+.+......++++|..
T Consensus        69 aDivvitaG~~~k~-----g~tR---~dll~~N~~----i~~~i~~~i~~~~p~a~vivvtNP  119 (310)
T cd01337          69 ADVVVIPAGVPRKP-----GMTR---DDLFNINAG----IVRDLATAVAKACPKALILIISNP  119 (310)
T ss_pred             CCEEEEeCCCCCCC-----CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCeEEEEccCc
Confidence            44999999975421     2232   344666665    445555555444433326665553

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.48  E-value=0.014  Score=47.14  Aligned_cols=42  Identities=21%  Similarity=0.360  Sum_probs=36.4

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK   89 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~   89 (206)
                      ..+++||+++|.|+++-.|+.++..|.++|++|.++.|....
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~  195 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQN  195 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchh
Confidence            456789999999998779999999999999999999885443

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=96.47  E-value=0.028  Score=47.70  Aligned_cols=44  Identities=16%  Similarity=0.129  Sum_probs=35.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC---cEEEEEcChhhHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL---NLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~---~V~~~~r~~~~~~~~~~   95 (206)
                      .|.+++|.||++++|...++.+...|.   +|+++++++++++.+.+
T Consensus       175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~  221 (410)
T cd08238         175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQR  221 (410)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHH
Confidence            478999999999999998776666654   79999999988776544

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=96.46  E-value=0.021  Score=46.97  Aligned_cols=116  Identities=17%  Similarity=0.172  Sum_probs=68.6

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCC-------cEEEEEcChh--hHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGL-------NLVLVGRNPD--KLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERI  124 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~-------~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  124 (206)
                      +++.|+|++|.+|.+++..++.+|.       ++++.|.+++  +++..+.++..... ....  .+.+...       -
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~-~~~~--~~~i~~~-------~   72 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF-PLLA--EIVITDD-------P   72 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccc-cccC--ceEEecC-------c
Confidence            4789999999999999999998774       6999999543  35555555544210 0000  0111111       1


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC-CceEEEec
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK-GLSMLNIG  193 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~~iv~is  193 (206)
                      .+.+.+  -|++|.+||.....     ..+.   .+.++.|.-    +.+.+.+.+.+... ...++++|
T Consensus        73 ~~~~~d--aDivvitaG~~~k~-----g~tR---~dll~~N~~----i~~~i~~~i~~~~~~~~iiivvs  128 (322)
T cd01338          73 NVAFKD--ADWALLVGAKPRGP-----GMER---ADLLKANGK----IFTAQGKALNDVASRDVKVLVVG  128 (322)
T ss_pred             HHHhCC--CCEEEEeCCCCCCC-----CCcH---HHHHHHHHH----HHHHHHHHHHhhCCCCeEEEEec
Confidence            233343  44999999975431     2233   334666655    66777777766652 44255554

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=96.46  E-value=0.026  Score=46.71  Aligned_cols=41  Identities=24%  Similarity=0.458  Sum_probs=35.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .|++++|.|+ +++|...++.....|++|+++++++++++.+
T Consensus       166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~  206 (349)
T TIGR03201       166 KGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMM  206 (349)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence            4889999999 9999999888888999999999988876644

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK07574 formate dehydrogenase; Provisional

Probab=96.46  E-value=0.041  Score=46.34  Aligned_cols=38  Identities=18%  Similarity=0.167  Sum_probs=34.1

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .+++||++.|.|. |.||+++|+.+...|++|...+|..
T Consensus       188 ~~L~gktVGIvG~-G~IG~~vA~~l~~fG~~V~~~dr~~  225 (385)
T PRK07574        188 YDLEGMTVGIVGA-GRIGLAVLRRLKPFDVKLHYTDRHR  225 (385)
T ss_pred             eecCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCCC
Confidence            3478999999998 5799999999999999999999875

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=96.45  E-value=0.033  Score=45.30  Aligned_cols=42  Identities=19%  Similarity=0.182  Sum_probs=36.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .+.+++|.|+++++|.++++.....|++|+.+.++.++.+.+
T Consensus       139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~  180 (329)
T cd08250         139 SGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFL  180 (329)
T ss_pred             CCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHH
Confidence            478999999999999998888888999999999887765544

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.43  E-value=0.024  Score=48.33  Aligned_cols=45  Identities=22%  Similarity=0.399  Sum_probs=39.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCC-CcEEEEEcChhhHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDS   96 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~   96 (206)
                      +.+++++|.|+ |.+|+.+++.+...| .+|++++|+.++.++..++
T Consensus       178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~  223 (417)
T TIGR01035       178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKE  223 (417)
T ss_pred             ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence            56899999998 899999999999999 6899999998877666554

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=96.42  E-value=0.17  Score=41.31  Aligned_cols=113  Identities=15%  Similarity=0.172  Sum_probs=70.5

Q ss_pred             EEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcC---CceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYA---KTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +.|.|+ |.+|.++|..++.+|.  ++++.|.++++.+..+.++.....   ...+... .  .+         .+.+.+
T Consensus         2 i~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~-~--~~---------y~~~~~   68 (307)
T cd05290           2 LVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIR-A--GD---------YDDCAD   68 (307)
T ss_pred             EEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEE-E--CC---------HHHhCC
Confidence            678888 8999999999998874  799999999888877777765321   1122222 1  11         233343


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                        -|++|..||.....     ..+.+ =.+.++.|..    +.+...|.+.+..... ++.+.|
T Consensus        69 --aDivvitaG~~~kp-----g~tr~-R~dll~~N~~----I~~~i~~~i~~~~p~~-i~ivvs  119 (307)
T cd05290          69 --ADIIVITAGPSIDP-----GNTDD-RLDLAQTNAK----IIREIMGNITKVTKEA-VIILIT  119 (307)
T ss_pred             --CCEEEECCCCCCCC-----CCCch-HHHHHHHHHH----HHHHHHHHHHHhCCCe-EEEEec
Confidence              44899999975431     22311 1233555554    7777777777666544 554444

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.42  E-value=0.026  Score=48.16  Aligned_cols=46  Identities=22%  Similarity=0.441  Sum_probs=39.5

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~   97 (206)
                      +.+++++|.|+ |++|+.+++.+...|+ +|++++|+.++.+++.+++
T Consensus       180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~  226 (423)
T PRK00045        180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF  226 (423)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc
Confidence            56899999987 8999999999999997 7999999988877666553

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=96.42  E-value=0.0089  Score=47.49  Aligned_cols=36  Identities=17%  Similarity=0.250  Sum_probs=31.7

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK   91 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~   91 (206)
                      +++|+||++- |+.++++|.+.|++|+.+.+++...+
T Consensus         2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~   37 (256)
T TIGR00715         2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKH   37 (256)
T ss_pred             eEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccc
Confidence            6899999987 99999999999999999999876533

This enzyme was found to be a monomer by gel filtration.

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.41  E-value=0.044  Score=46.34  Aligned_cols=47  Identities=19%  Similarity=0.345  Sum_probs=42.2

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCC-CcEEEEEcChhhHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDSIQ   98 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~~~   98 (206)
                      +++++++|.|++ -+|.-.|++|+++| .+|+++.|+.++.+++++++.
T Consensus       176 L~~~~vlvIGAG-em~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~  223 (414)
T COG0373         176 LKDKKVLVIGAG-EMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG  223 (414)
T ss_pred             cccCeEEEEccc-HHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC
Confidence            689999999994 79999999999999 589999999999998888774

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=96.41  E-value=0.038  Score=47.33  Aligned_cols=116  Identities=15%  Similarity=0.186  Sum_probs=72.8

Q ss_pred             cEEEEECCCChHHHHHHHHHHHC-------CC--cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKT-------GL--NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERI  124 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~-------g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  124 (206)
                      -+|.|+|++|.+|.+++..++..       |.  +++++++++++++..+.+++...... .  ..+.+....       
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~-~--~~v~i~~~~-------  170 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPL-L--REVSIGIDP-------  170 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhh-c--CceEEecCC-------
Confidence            46899999999999999999987       64  79999999999988888886632110 0  011111110       


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHh-CCCCceEEEec
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLK-RKKGLSMLNIG  193 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-~~~g~~iv~is  193 (206)
                      .+.+.  |-|++|..||.... +    ..+.   .+.++.|..    +.+...+.+.+ .+....++.+|
T Consensus       171 ye~~k--daDiVVitAG~prk-p----G~tR---~dLl~~N~~----I~k~i~~~I~~~a~p~~ivIVVs  226 (444)
T PLN00112        171 YEVFQ--DAEWALLIGAKPRG-P----GMER---ADLLDINGQ----IFAEQGKALNEVASRNVKVIVVG  226 (444)
T ss_pred             HHHhC--cCCEEEECCCCCCC-C----CCCH---HHHHHHHHH----HHHHHHHHHHHhcCCCeEEEEcC
Confidence            22334  34499999997532 1    2232   345666665    66666666766 34344155555

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=96.41  E-value=0.03  Score=45.90  Aligned_cols=37  Identities=19%  Similarity=0.409  Sum_probs=33.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD   88 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~   88 (206)
                      .|++++|.|+++++|.++++.....|++++.+.++.+
T Consensus       146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~  182 (341)
T cd08290         146 PGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRP  182 (341)
T ss_pred             CCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence            5889999999999999999988899999999888764

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.39  E-value=0.012  Score=45.59  Aligned_cols=43  Identities=28%  Similarity=0.422  Sum_probs=37.4

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~   97 (206)
                      ++.|.||+|.+|.++++.|++.|++|.+.+|++++.++..+..
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~   44 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKA   44 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHH
Confidence            4789999999999999999999999999999998877665543

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=96.38  E-value=0.028  Score=46.89  Aligned_cols=77  Identities=26%  Similarity=0.347  Sum_probs=49.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|.|+ +++|...++....+|+ +|+++++++++++.+ +++     +.. ..  .|..+  ++..+.+.+..++
T Consensus       191 ~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a-~~~-----Ga~-~~--i~~~~--~~~~~~i~~~~~~  258 (371)
T cd08281         191 PGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNEDKLALA-REL-----GAT-AT--VNAGD--PNAVEQVRELTGG  258 (371)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH-HHc-----CCc-eE--eCCCc--hhHHHHHHHHhCC
Confidence            4789999985 8999998887778899 699999988776543 222     111 11  12222  2334445444444


Q ss_pred             CCccEEEEecc
Q 028656          131 LDVGVLINNVG  141 (206)
Q Consensus       131 ~~id~lvnnAg  141 (206)
                       .+|+++.+.|
T Consensus       259 -g~d~vid~~G  268 (371)
T cd08281         259 -GVDYAFEMAG  268 (371)
T ss_pred             -CCCEEEECCC
Confidence             4668888776

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=96.35  E-value=0.039  Score=44.88  Aligned_cols=79  Identities=20%  Similarity=0.253  Sum_probs=52.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|.+++|.|+++.+|.++++.....|++|+.++++.++.+.+ +++     +.. ..+  +..+.  ...+.+.+..++.
T Consensus       140 ~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~-~~~-----g~~-~~~--~~~~~--~~~~~~~~~~~~~  208 (327)
T PRK10754        140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRA-KKA-----GAW-QVI--NYREE--NIVERVKEITGGK  208 (327)
T ss_pred             CCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHC-----CCC-EEE--cCCCC--cHHHHHHHHcCCC
Confidence            578999999999999999888888999999999887765543 222     111 112  22221  3334444444544


Q ss_pred             CccEEEEecc
Q 028656          132 DVGVLINNVG  141 (206)
Q Consensus       132 ~id~lvnnAg  141 (206)
                      .+|+++++.|
T Consensus       209 ~~d~vl~~~~  218 (327)
T PRK10754        209 KVRVVYDSVG  218 (327)
T ss_pred             CeEEEEECCc
Confidence            5778888754

>PLN03139 formate dehydrogenase; Provisional

Probab=96.34  E-value=0.057  Score=45.49  Aligned_cols=38  Identities=21%  Similarity=0.170  Sum_probs=33.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .++.||++.|.|. |.||+++++.+...|++|+..+|+.
T Consensus       195 ~~L~gktVGIVG~-G~IG~~vA~~L~afG~~V~~~d~~~  232 (386)
T PLN03139        195 YDLEGKTVGTVGA-GRIGRLLLQRLKPFNCNLLYHDRLK  232 (386)
T ss_pred             cCCCCCEEEEEee-cHHHHHHHHHHHHCCCEEEEECCCC
Confidence            3578999999996 6899999999999999999998864

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.34  E-value=0.22  Score=40.77  Aligned_cols=116  Identities=22%  Similarity=0.316  Sum_probs=69.8

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      ..+.|.|+ |.+|.++|..++..|.  +++++|.+++.++..+.+++...+-....  .+-.+.+        .+.+.  
T Consensus         4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~--~v~~~~d--------y~~~~--   70 (312)
T cd05293           4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNP--KIEADKD--------YSVTA--   70 (312)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCC--EEEECCC--------HHHhC--
Confidence            46899996 9999999999998774  79999999988877777776542110000  1111111        11233  


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      +-|++|.+||.... +    ..+..   ..++.|.-    +.+.+.+.+.+.....-++++|.
T Consensus        71 ~adivvitaG~~~k-~----g~~R~---dll~~N~~----i~~~~~~~i~~~~p~~~vivvsN  121 (312)
T cd05293          71 NSKVVIVTAGARQN-E----GESRL---DLVQRNVD----IFKGIIPKLVKYSPNAILLVVSN  121 (312)
T ss_pred             CCCEEEECCCCCCC-C----CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEccC
Confidence            34599999997543 1    23332   34555554    56666666655543342555553

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=96.34  E-value=0.048  Score=44.11  Aligned_cols=59  Identities=17%  Similarity=0.296  Sum_probs=45.0

Q ss_pred             EEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      |+|.|+ ||+|.++++.|+..|. ++.++|.+                   ..+.+.+++.+++.+++.++.....++.+
T Consensus         2 VlVVGa-GGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~   80 (291)
T cd01488           2 ILVIGA-GGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD   80 (291)
T ss_pred             EEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence            677775 6999999999999996 77777653                   24556666777777788888877766654

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=96.34  E-value=0.051  Score=44.73  Aligned_cols=115  Identities=21%  Similarity=0.225  Sum_probs=67.7

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC-------cEEEEEcCh--hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL-------NLVLVGRNP--DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIK  125 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  125 (206)
                      ++.|+|++|.+|.+++..++..|.       ++++.|.++  ++++..+.++..... ....  ...+.       ..-.
T Consensus         5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~-~~~~--~~~i~-------~~~~   74 (323)
T TIGR01759         5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAF-PLLA--GVVAT-------TDPE   74 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccc-cccC--CcEEe-------cChH
Confidence            589999999999999999998874       699999965  446666666654210 0000  00111       1112


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC-CceEEEec
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK-GLSMLNIG  193 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~~iv~is  193 (206)
                      +.+.+  -|++|.+||.....     ..+.   .+.++.|..    +.+.+.+.+.+... ...++++|
T Consensus        75 ~~~~d--aDvVVitAG~~~k~-----g~tR---~dll~~Na~----i~~~i~~~i~~~~~~~~iiivvs  129 (323)
T TIGR01759        75 EAFKD--VDAALLVGAFPRKP-----GMER---ADLLSKNGK----IFKEQGKALNKVAKKDVKVLVVG  129 (323)
T ss_pred             HHhCC--CCEEEEeCCCCCCC-----CCcH---HHHHHHHHH----HHHHHHHHHHhhCCCCeEEEEeC
Confidence            33343  44999999975421     2233   345666665    56666666665543 33144444

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.32  E-value=0.059  Score=41.39  Aligned_cols=39  Identities=23%  Similarity=0.224  Sum_probs=33.9

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD   88 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~   88 (206)
                      ++++||.++|.||+ .+|..-++.|++.|++|++++.+..
T Consensus         5 l~l~gk~vlVvGgG-~va~rk~~~Ll~~ga~VtVvsp~~~   43 (205)
T TIGR01470         5 ANLEGRAVLVVGGG-DVALRKARLLLKAGAQLRVIAEELE   43 (205)
T ss_pred             EEcCCCeEEEECcC-HHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            45789999999985 7899999999999999999987653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=96.31  E-value=0.036  Score=46.72  Aligned_cols=42  Identities=26%  Similarity=0.272  Sum_probs=35.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .|.+++|+|+++++|.++++.+..+|+++++++++.++.+.+
T Consensus       189 ~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~  230 (398)
T TIGR01751       189 PGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYC  230 (398)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence            478999999999999999988888999998888877665443

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=96.29  E-value=0.035  Score=38.81  Aligned_cols=67  Identities=30%  Similarity=0.466  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCccEEEEecc
Q 028656           64 GIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVG  141 (206)
Q Consensus        64 giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id~lvnnAg  141 (206)
                      |+|...++-+...|++|+++++++++.+.+++ +     +.  . ...|..+.  +..+++.+..++..+|+++.++|
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~-~-----Ga--~-~~~~~~~~--~~~~~i~~~~~~~~~d~vid~~g   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE-L-----GA--D-HVIDYSDD--DFVEQIRELTGGRGVDVVIDCVG   67 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-T-----TE--S-EEEETTTS--SHHHHHHHHTTTSSEEEEEESSS
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh-h-----cc--c-cccccccc--ccccccccccccccceEEEEecC
Confidence            68998888888899999999999987654432 2     21  1 12444444  46677777777656889999988

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.29  E-value=0.014  Score=46.93  Aligned_cols=44  Identities=14%  Similarity=0.262  Sum_probs=38.4

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK   91 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~   91 (206)
                      ..+++||+++|.|.|.-+|+.+++.|.++|++|.++.+....++
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~  196 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA  196 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH
Confidence            45688999999999999999999999999999999988765443

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.28  E-value=0.014  Score=46.85  Aligned_cols=44  Identities=23%  Similarity=0.338  Sum_probs=37.7

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~   97 (206)
                      +++++|.|+ ||-+++++..|++.|+ +|.+++|+.++.+++++.+
T Consensus       122 ~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~  166 (272)
T PRK12550        122 DLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELY  166 (272)
T ss_pred             CCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHh
Confidence            468899987 7999999999999997 5999999998887776653

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=96.27  E-value=0.049  Score=45.38  Aligned_cols=41  Identities=24%  Similarity=0.310  Sum_probs=34.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~   93 (206)
                      .|.+++|.|+ +++|...++.....|+ +|+.++++.++.+.+
T Consensus       187 ~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~  228 (369)
T cd08301         187 KGSTVAIFGL-GAVGLAVAEGARIRGASRIIGVDLNPSKFEQA  228 (369)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            5889999985 8999998888888898 799999988776543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=96.25  E-value=0.033  Score=44.62  Aligned_cols=40  Identities=28%  Similarity=0.341  Sum_probs=32.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCc-EEEEEcChhhHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLN-LVLVGRNPDKLKD   92 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~-V~~~~r~~~~~~~   92 (206)
                      .|++++|.|+ +++|...++.+...|++ |+++++++++++.
T Consensus       120 ~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~  160 (280)
T TIGR03366       120 KGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPDRREL  160 (280)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence            5889999987 79999998888888997 8888887776543

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=96.24  E-value=0.052  Score=45.63  Aligned_cols=43  Identities=26%  Similarity=0.266  Sum_probs=36.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      ..+.+++|+|+++++|.+.+......|+++++++++.++.+.+
T Consensus       192 ~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~  234 (393)
T cd08246         192 KPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYC  234 (393)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence            3578999999999999999988888999999998888776544

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=96.24  E-value=0.052  Score=43.72  Aligned_cols=42  Identities=19%  Similarity=0.254  Sum_probs=36.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .|.+++|.|+++++|.++++....+|++|+.+.+++++.+.+
T Consensus       142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~  183 (320)
T cd08243         142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALL  183 (320)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            478999999999999999988889999999999887665443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=96.22  E-value=0.044  Score=45.43  Aligned_cols=81  Identities=15%  Similarity=0.259  Sum_probs=50.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC-chHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD-LDEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~  129 (206)
                      .|++++|+| ++++|..+++.....|+ +|+.+++++++.+.+. ++     +.. ..+  |..+. ..+..+.+.+..+
T Consensus       177 ~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~-~~-----g~~-~vi--~~~~~~~~~~~~~i~~~~~  246 (361)
T cd08231         177 AGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR-EF-----GAD-ATI--DIDELPDPQRRAIVRDITG  246 (361)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hc-----CCC-eEE--cCcccccHHHHHHHHHHhC
Confidence            588999997 58999999988888999 8999988877654332 22     111 111  22211 1112234444444


Q ss_pred             CCCccEEEEeccc
Q 028656          130 GLDVGVLINNVGI  142 (206)
Q Consensus       130 ~~~id~lvnnAg~  142 (206)
                      +..+|+++++.|.
T Consensus       247 ~~~~d~vid~~g~  259 (361)
T cd08231         247 GRGADVVIEASGH  259 (361)
T ss_pred             CCCCcEEEECCCC
Confidence            4357799988763

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PRK04148 hypothetical protein; Provisional

Probab=96.21  E-value=0.016  Score=41.23  Aligned_cols=55  Identities=13%  Similarity=0.172  Sum_probs=42.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD  116 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (206)
                      +++.+++.|.+  .|.++|..|++.|++|+.+|.++...+...+.        .+..+..|+.+.
T Consensus        16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p   70 (134)
T PRK04148         16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNP   70 (134)
T ss_pred             cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCC
Confidence            35789999997  67889999999999999999999876554332        245666777654

>PLN02602 lactate dehydrogenase

Probab=96.21  E-value=0.24  Score=41.24  Aligned_cols=115  Identities=23%  Similarity=0.316  Sum_probs=69.6

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcC-CceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYA-KTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +.+.|+|+ |.+|.++|..++.+|.  +++++|.+++.++..+.++....+ .... .+..  ..+        .+.+.+
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~-~i~~--~~d--------y~~~~d  105 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRT-KILA--STD--------YAVTAG  105 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCC-EEEe--CCC--------HHHhCC
Confidence            68999996 8999999999998874  799999999888877777765321 0111 1111  111        112343


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                        -|++|-.||.....     ..+..   +.+..|.-    +.+.+.+.+.+......+++++-
T Consensus       106 --aDiVVitAG~~~k~-----g~tR~---dll~~N~~----I~~~i~~~I~~~~p~~ivivvtN  155 (350)
T PLN02602        106 --SDLCIVTAGARQIP-----GESRL---NLLQRNVA----LFRKIIPELAKYSPDTILLIVSN  155 (350)
T ss_pred             --CCEEEECCCCCCCc-----CCCHH---HHHHHHHH----HHHHHHHHHHHHCCCeEEEEecC
Confidence              44999999975431     22332   33444544    55666665655543332555553

>PLN02827 Alcohol dehydrogenase-like

Probab=96.20  E-value=0.059  Score=45.20  Aligned_cols=41  Identities=27%  Similarity=0.336  Sum_probs=32.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCc-EEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLN-LVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~-V~~~~r~~~~~~~~   93 (206)
                      .|++++|.|+ +++|...++.....|++ |+.+++++++.+.+
T Consensus       193 ~g~~VlV~G~-G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a  234 (378)
T PLN02827        193 KGSSVVIFGL-GTVGLSVAQGAKLRGASQIIGVDINPEKAEKA  234 (378)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence            5889999986 89999998888889985 77777777765533

>PRK06932 glycerate dehydrogenase; Provisional

Probab=96.20  E-value=0.031  Score=45.79  Aligned_cols=66  Identities=11%  Similarity=0.143  Sum_probs=43.8

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhH-HHHHHHHHHhcCCceEEEEEEecCCC
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVVDFSGD  116 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (206)
                      +++||++.|.|- |.||+++|+.+...|++|+..+|..... ......+.+......+..+.+-++.+
T Consensus       144 ~l~gktvgIiG~-G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~  210 (314)
T PRK06932        144 DVRGSTLGVFGK-GCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTET  210 (314)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChH
Confidence            578999999998 6999999999999999999888753211 00011122222344566666666543

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=96.19  E-value=0.056  Score=44.61  Aligned_cols=78  Identities=21%  Similarity=0.233  Sum_probs=50.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|.|+ +++|...++.....|+ +|++++++.++.+.+. ++   + ...  .  .|..+.  +..+.+.+..++
T Consensus       172 ~g~~vlI~g~-g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~-~~---g-a~~--~--i~~~~~--~~~~~l~~~~~~  239 (351)
T cd08233         172 PGDTALVLGA-GPIGLLTILALKAAGASKIIVSEPSEARRELAE-EL---G-ATI--V--LDPTEV--DVVAEVRKLTGG  239 (351)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh---C-CCE--E--ECCCcc--CHHHHHHHHhCC
Confidence            4789999985 7999999988889999 7888888887765432 22   1 111  1  222222  334455555444


Q ss_pred             CCccEEEEecc
Q 028656          131 LDVGVLINNVG  141 (206)
Q Consensus       131 ~~id~lvnnAg  141 (206)
                      ..+|+++++.|
T Consensus       240 ~~~d~vid~~g  250 (351)
T cd08233         240 GGVDVSFDCAG  250 (351)
T ss_pred             CCCCEEEECCC
Confidence            34678888876

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.17  E-value=0.011  Score=43.44  Aligned_cols=47  Identities=19%  Similarity=0.404  Sum_probs=36.2

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS   94 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~   94 (206)
                      ..+++||+++|.|.|.-+|+.++..|.++|++|.++......+++..
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~   77 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEIT   77 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHH
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccccee
Confidence            45688999999999999999999999999999999887766655433

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=96.17  E-value=0.18  Score=41.05  Aligned_cols=113  Identities=21%  Similarity=0.288  Sum_probs=67.7

Q ss_pred             EEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           57 LVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        57 lItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      .|.|+ |++|.+++..++.+|  .++++.|++.++.+....++........  ......+++        .+.+.+-|  
T Consensus         2 ~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~--~~~i~~~~~--------~~~l~~aD--   68 (300)
T cd00300           2 TIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLA--TGTIVRGGD--------YADAADAD--   68 (300)
T ss_pred             EEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccC--CCeEEECCC--------HHHhCCCC--
Confidence            57787 579999999999988  5899999999988888888876422100  011111111        12334435  


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      ++|.+||.....     ..+..   ..+..|..    +.+.+.+.+.+......++++|.
T Consensus        69 iVIitag~p~~~-----~~~R~---~l~~~n~~----i~~~~~~~i~~~~p~~~viv~sN  116 (300)
T cd00300          69 IVVITAGAPRKP-----GETRL---DLINRNAP----ILRSVITNLKKYGPDAIILVVSN  116 (300)
T ss_pred             EEEEcCCCCCCC-----CCCHH---HHHHHHHH----HHHHHHHHHHHhCCCeEEEEccC
Confidence            999999875321     22322   33444544    55666665655543332555554

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=96.17  E-value=0.072  Score=47.45  Aligned_cols=63  Identities=16%  Similarity=0.199  Sum_probs=48.8

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC----------------------hhhHHHHHHHHHHhcCCceE
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN----------------------PDKLKDVSDSIQAKYAKTQI  106 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~----------------------~~~~~~~~~~~~~~~~~~~~  106 (206)
                      ++++.+|+|.|+ ||+|..+++.|++-|. +++++|.+                      ..+.+.+++.+++.+|+..+
T Consensus       335 kL~~~kVLIvGa-GGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i  413 (664)
T TIGR01381       335 RYSQLKVLLLGA-GTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQA  413 (664)
T ss_pred             HHhcCeEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEE
Confidence            367899999998 5999999999999997 78888763                      12344566777777788877


Q ss_pred             EEEEEec
Q 028656          107 KSVVVDF  113 (206)
Q Consensus       107 ~~~~~d~  113 (206)
                      ..+...+
T Consensus       414 ~~~~~~I  420 (664)
T TIGR01381       414 TGHRLTV  420 (664)
T ss_pred             EEeeeee
Confidence            7776663

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=96.17  E-value=0.039  Score=45.17  Aligned_cols=114  Identities=17%  Similarity=0.269  Sum_probs=64.6

Q ss_pred             EEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      +.|+|++|.+|.++|..++.++.  ++++.|+++  .+..+.++.......++  .... .+      +...+.+.+  -
T Consensus         2 V~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~~~~~i--~~~~-~~------~~~~~~~~d--a   68 (312)
T TIGR01772         2 VAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIPTAASV--KGFS-GE------EGLENALKG--A   68 (312)
T ss_pred             EEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCCcCceE--EEec-CC------CchHHHcCC--C
Confidence            78999999999999999998874  799999987  22222233221100111  1000 01      012234444  4


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      |++|.+||.....     ..+.   .+.++.|..    +.+...+.+.+.....-++++|.
T Consensus        69 DivvitaG~~~~~-----g~~R---~dll~~N~~----I~~~i~~~i~~~~p~~iiivvsN  117 (312)
T TIGR01772        69 DVVVIPAGVPRKP-----GMTR---DDLFNVNAG----IVKDLVAAVAESCPKAMILVITN  117 (312)
T ss_pred             CEEEEeCCCCCCC-----CccH---HHHHHHhHH----HHHHHHHHHHHhCCCeEEEEecC
Confidence            4999999975321     2222   334666666    66666666665654442555554

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.15  E-value=0.067  Score=46.67  Aligned_cols=43  Identities=16%  Similarity=0.086  Sum_probs=37.2

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS   94 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~   94 (206)
                      ..+.+|+|.|+ |.+|+..+......|++|+++|+++++++...
T Consensus       163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae  205 (509)
T PRK09424        163 VPPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE  205 (509)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            45899999999 58999999999999999999999998876543

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.12  E-value=0.11  Score=45.26  Aligned_cols=42  Identities=17%  Similarity=0.073  Sum_probs=36.0

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      ..+.+++|.|+ |.+|...++.+...|++|++.+++.++++..
T Consensus       162 vp~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a  203 (511)
T TIGR00561       162 VPPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  203 (511)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            34689999997 7999999999999999999999998875543

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=96.11  E-value=0.053  Score=46.31  Aligned_cols=58  Identities=14%  Similarity=0.247  Sum_probs=43.3

Q ss_pred             EEEECCCChHHHHHHHHHHHCCC------cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEEEEE
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGL------NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIKSVV  110 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~------~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~  110 (206)
                      |+|.|+ ||+|.++++.|+..|.      ++.++|.+                   ..+.+.+++.+++.+++.++....
T Consensus         2 VlvVGa-GGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~   80 (435)
T cd01490           2 VFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ   80 (435)
T ss_pred             EEEECC-CHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence            677775 6999999999999987      78888764                   134555666677777787777776


Q ss_pred             EecC
Q 028656          111 VDFS  114 (206)
Q Consensus       111 ~d~~  114 (206)
                      ..+.
T Consensus        81 ~~v~   84 (435)
T cd01490          81 NRVG   84 (435)
T ss_pred             cccC
Confidence            6554

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.10  E-value=0.045  Score=46.92  Aligned_cols=40  Identities=15%  Similarity=0.403  Sum_probs=35.0

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~   95 (206)
                      +++|.|+ |.+|+++++.|.++|.+|+++++++++.+++.+
T Consensus         2 ~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~   41 (453)
T PRK09496          2 KIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQD   41 (453)
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh
Confidence            5788887 899999999999999999999999987766543

>PRK14851 hypothetical protein; Provisional

Probab=96.09  E-value=0.059  Score=48.69  Aligned_cols=66  Identities=14%  Similarity=0.202  Sum_probs=51.2

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEE
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIK  107 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~  107 (206)
                      .-++++.+|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..|.+.+++.+.+.++..++.
T Consensus        38 Q~kL~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~  116 (679)
T PRK14851         38 QERLAEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEIT  116 (679)
T ss_pred             HHHHhcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEE
Confidence            34578999999996 6999999999999996 78887764                   245555667777777888887


Q ss_pred             EEEEecC
Q 028656          108 SVVVDFS  114 (206)
Q Consensus       108 ~~~~d~~  114 (206)
                      .+...++
T Consensus       117 ~~~~~i~  123 (679)
T PRK14851        117 PFPAGIN  123 (679)
T ss_pred             EEecCCC
Confidence            7776665

>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]

Probab=96.07  E-value=0.014  Score=45.80  Aligned_cols=117  Identities=16%  Similarity=0.139  Sum_probs=78.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH-HHHHH---hcCCceEEEEEEecCCCchHHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS-DSIQA---KYAKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~-~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      ..|+++|||-+|-=|.-++.-|+.+|++|-.+-|..+.....+ +.+-.   ...+........|++|+  .+..++...
T Consensus        27 ~rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDs--s~L~k~I~~  104 (376)
T KOG1372|consen   27 PRKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDS--SCLIKLIST  104 (376)
T ss_pred             cceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccch--HHHHHHHhc
Confidence            3469999999999999999999999999998877654433221 22211   12346777888999998  555555544


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhh
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPG  179 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~  179 (206)
                         +.|+-+.|-|+-++-. ..| +.    -+-+-++...|++.++.+.-..
T Consensus       105 ---ikPtEiYnLaAQSHVk-vSF-dl----peYTAeVdavGtLRlLdAi~~c  147 (376)
T KOG1372|consen  105 ---IKPTEVYNLAAQSHVK-VSF-DL----PEYTAEVDAVGTLRLLDAIRAC  147 (376)
T ss_pred             ---cCchhhhhhhhhcceE-EEe-ec----ccceeeccchhhhhHHHHHHhc
Confidence               4455677777655421 111 11    1445678888999998886543

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=96.05  E-value=0.096  Score=41.18  Aligned_cols=42  Identities=14%  Similarity=0.197  Sum_probs=35.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .|.+++|.|+++++|...++....+|++|+.++++.++.+.+
T Consensus       108 ~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~  149 (293)
T cd05195         108 KGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFL  149 (293)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            478999999999999999887778899999999887665544

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.00  E-value=0.56  Score=38.58  Aligned_cols=122  Identities=19%  Similarity=0.192  Sum_probs=67.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhc--CCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKY--AKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      +.+.+.|.|+ |.+|..++..++..|. +|++.|++++..+....++....  .+...   .+-.+.+        .+.+
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~---~I~~~~d--------~~~l   72 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNS---KVIGTNN--------YEDI   72 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCe---EEEECCC--------HHHh
Confidence            3468999995 7899999999999994 89999999886543222222210  01111   1111111        1233


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      .+  -|++|+++|......  -.+.+.+. .+.+..|.    .+.+.+.+.+.+......++++|.
T Consensus        73 ~~--aDiVI~tag~~~~~~--~~~~~~~r-~~~l~~n~----~i~~~i~~~i~~~~p~a~~iv~sN  129 (321)
T PTZ00082         73 AG--SDVVIVTAGLTKRPG--KSDKEWNR-DDLLPLNA----KIMDEVAEGIKKYCPNAFVIVITN  129 (321)
T ss_pred             CC--CCEEEECCCCCCCCC--CCcCCCCH-HHHHHHHH----HHHHHHHHHHHHHCCCeEEEEecC
Confidence            43  449999999864321  11111121 33455554    356666666655543322665554

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.98  E-value=0.018  Score=46.66  Aligned_cols=47  Identities=21%  Similarity=0.241  Sum_probs=40.1

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS   94 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~   94 (206)
                      ..++.||++.|.|.|+-+|+.++..|.++|++|.++.+....+++..
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~  200 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALC  200 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHH
Confidence            45678999999999999999999999999999999977765544433

>PLN02494 adenosylhomocysteinase

Probab=95.96  E-value=0.11  Score=44.70  Aligned_cols=42  Identities=19%  Similarity=0.300  Sum_probs=36.5

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL   90 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~   90 (206)
                      +..+.||+++|.|.+ .||+.+|+.+...|++|+++++++.+.
T Consensus       249 ~i~LaGKtVvViGyG-~IGr~vA~~aka~Ga~VIV~e~dp~r~  290 (477)
T PLN02494        249 DVMIAGKVAVICGYG-DVGKGCAAAMKAAGARVIVTEIDPICA  290 (477)
T ss_pred             CCccCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCchhh
Confidence            344679999999996 899999999999999999999987653

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=95.94  E-value=0.069  Score=43.95  Aligned_cols=88  Identities=17%  Similarity=0.215  Sum_probs=54.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-ChhhHHH-----HHHHHHHhcCCceEEEEEEecCCCchHHH-H
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKD-----VSDSIQAKYAKTQIKSVVVDFSGDLDEGV-E  122 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~  122 (206)
                      .++||++-|.|. |.||+++++.+...|++|+..++ .......     ....+.+.-....+..+.+-++++-...+ +
T Consensus       139 el~gkTvGIiG~-G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~  217 (324)
T COG0111         139 ELAGKTVGIIGL-GRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINA  217 (324)
T ss_pred             cccCCEEEEECC-CHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCH
Confidence            467999999998 58999999999999999999999 3221111     01112222234556666666665533333 3


Q ss_pred             HHHHHhcCCCccEEEEec
Q 028656          123 RIKEAIEGLDVGVLINNV  140 (206)
Q Consensus       123 ~~~~~~~~~~id~lvnnA  140 (206)
                      +..+..+.  -.++||+|
T Consensus       218 ~~~a~MK~--gailIN~a  233 (324)
T COG0111         218 EELAKMKP--GAILINAA  233 (324)
T ss_pred             HHHhhCCC--CeEEEECC
Confidence            33333332  22666665

>smart00829 PKS_ER Enoylreductase

Probab=95.90  E-value=0.073  Score=41.88  Aligned_cols=42  Identities=17%  Similarity=0.278  Sum_probs=36.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .|.+++|.|+++++|..+++....+|++|+.++++.++.+.+
T Consensus       104 ~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~  145 (288)
T smart00829      104 PGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFL  145 (288)
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            477999999999999999888888999999999988776554

Enoylreductase in Polyketide synthases.

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.86  E-value=0.11  Score=42.14  Aligned_cols=57  Identities=16%  Similarity=0.338  Sum_probs=40.7

Q ss_pred             EEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh---------------------hhHHHHHHHHHHhcCCceEEEEEEec
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP---------------------DKLKDVSDSIQAKYAKTQIKSVVVDF  113 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~d~  113 (206)
                      |+|.|+ ||+|..+|+.|+..|. +++++|.+.                     .+.+.+++.+++.+++.++..+...+
T Consensus         2 VLIvGa-GGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I   80 (307)
T cd01486           2 CLLLGA-GTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI   80 (307)
T ss_pred             EEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence            677777 5999999999999996 787776531                     23445666667777777776665443

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.86  E-value=0.032  Score=36.95  Aligned_cols=40  Identities=20%  Similarity=0.436  Sum_probs=33.2

Q ss_pred             EEECCCChHHHHHHHHHHHCC---CcEEEE-EcChhhHHHHHHHH
Q 028656           57 LVTGPTDGIGKSFAFQLAKTG---LNLVLV-GRNPDKLKDVSDSI   97 (206)
Q Consensus        57 lItGas~giG~~~a~~l~~~g---~~V~~~-~r~~~~~~~~~~~~   97 (206)
                      .|. |+|.+|.++++.+.+.|   .+|.+. +|++++.+++.++.
T Consensus         3 ~iI-G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~   46 (96)
T PF03807_consen    3 GII-GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY   46 (96)
T ss_dssp             EEE-STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC
T ss_pred             EEE-CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh
Confidence            344 66899999999999999   899965 99999988777654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=95.85  E-value=0.1  Score=42.68  Aligned_cols=78  Identities=23%  Similarity=0.344  Sum_probs=49.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCc-EEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLN-LVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|.| ++++|.++++.....|.+ |+++.++.++.+.+. ++    +..  ..+  +..+.  ...+.+.+..++
T Consensus       165 ~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~-~~----g~~--~~~--~~~~~--~~~~~i~~~~~~  232 (343)
T cd08235         165 PGDTVLVIG-AGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAK-KL----GAD--YTI--DAAEE--DLVEKVRELTDG  232 (343)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-Hh----CCc--EEe--cCCcc--CHHHHHHHHhCC
Confidence            478999996 689999998877788999 888888877665442 22    111  111  22222  333445444454


Q ss_pred             CCccEEEEecc
Q 028656          131 LDVGVLINNVG  141 (206)
Q Consensus       131 ~~id~lvnnAg  141 (206)
                      ..+|++++++|
T Consensus       233 ~~vd~vld~~~  243 (343)
T cd08235         233 RGADVVIVATG  243 (343)
T ss_pred             cCCCEEEECCC
Confidence            45779998876

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>PRK05442 malate dehydrogenase; Provisional

Probab=95.85  E-value=0.068  Score=44.03  Aligned_cols=113  Identities=19%  Similarity=0.191  Sum_probs=67.3

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCC-------cEEEEEcCh--hhHHHHHHHHHHhc-CC-ceEEEEEEecCCCchHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGL-------NLVLVGRNP--DKLKDVSDSIQAKY-AK-TQIKSVVVDFSGDLDEGVE  122 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~-~~-~~~~~~~~d~~~~~~~~~~  122 (206)
                      +.+.|+|++|.+|..++..++..|.       ++++.|.++  ++++..+.++.... +. ..+     .++.       
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~-----~i~~-------   72 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGV-----VITD-------   72 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCc-----EEec-------
Confidence            4789999999999999999988663       699999954  34555555554421 10 011     1111       


Q ss_pred             HHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC--CCceEEEec
Q 028656          123 RIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK--KGLSMLNIG  193 (206)
Q Consensus       123 ~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~~iv~is  193 (206)
                      .-.+.+.+-|  ++|-+||....   +  ..+.   .+.++.|.-    +.+.+.+.+.+..  .+. ++++|
T Consensus        73 ~~y~~~~daD--iVVitaG~~~k---~--g~tR---~dll~~Na~----i~~~i~~~i~~~~~~~~i-iivvs  130 (326)
T PRK05442         73 DPNVAFKDAD--VALLVGARPRG---P--GMER---KDLLEANGA----IFTAQGKALNEVAARDVK-VLVVG  130 (326)
T ss_pred             ChHHHhCCCC--EEEEeCCCCCC---C--CCcH---HHHHHHHHH----HHHHHHHHHHHhCCCCeE-EEEeC
Confidence            1123344435  89999997542   1  2232   344566655    6777777776633  343 55555

>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised

Probab=95.84  E-value=0.022  Score=41.39  Aligned_cols=41  Identities=17%  Similarity=0.501  Sum_probs=33.9

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHH
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQ   98 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~   98 (206)
                      |+.+|+.+.+|+++|..|.++|.+|+++  +.++-+.++.++.
T Consensus         1 V~L~G~~sKvaraiA~~LC~rgv~V~m~--~~~~y~~lk~~~~   41 (164)
T PF12076_consen    1 VFLTGNTSKVARAIALALCRRGVQVVML--SKERYESLKSEAP   41 (164)
T ss_pred             CeecccccHHHHHHHHHHHhcCCEEEEe--cHHHHHHHHHHcC
Confidence            5789999999999999999999999999  5555566655553

This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=95.83  E-value=0.12  Score=42.47  Aligned_cols=37  Identities=14%  Similarity=0.085  Sum_probs=32.7

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHH-HCCCcEEEEEcCh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLA-KTGLNLVLVGRNP   87 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~-~~g~~V~~~~r~~   87 (206)
                      +++||++.|.|- |.||+++|+.+. ..|++|+..+|..
T Consensus       142 ~L~gktvGIiG~-G~IG~~va~~l~~~fgm~V~~~~~~~  179 (323)
T PRK15409        142 DVHHKTLGIVGM-GRIGMALAQRAHFGFNMPILYNARRH  179 (323)
T ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHHhcCCCEEEEECCCC
Confidence            578999999998 699999999997 8899999888763

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.81  E-value=0.15  Score=41.63  Aligned_cols=84  Identities=19%  Similarity=0.194  Sum_probs=59.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|.+++|.||+ -||..........|+ +|++++-.+++++-+++ +     +.+.....-... +.++..+.+...+++
T Consensus       169 ~Gs~vLV~GAG-PIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~-----Ga~~~~~~~~~~-~~~~~~~~v~~~~g~  240 (354)
T KOG0024|consen  169 KGSKVLVLGAG-PIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F-----GATVTDPSSHKS-SPQELAELVEKALGK  240 (354)
T ss_pred             cCCeEEEECCc-HHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h-----CCeEEeeccccc-cHHHHHHHHHhhccc
Confidence            57899999995 799988888888897 89999999998886655 4     222222211111 335556677777775


Q ss_pred             CCccEEEEecccc
Q 028656          131 LDVGVLINNVGIS  143 (206)
Q Consensus       131 ~~id~lvnnAg~~  143 (206)
                      ..+|+.+.|.|..
T Consensus       241 ~~~d~~~dCsG~~  253 (354)
T KOG0024|consen  241 KQPDVTFDCSGAE  253 (354)
T ss_pred             cCCCeEEEccCch
Confidence            5688999998764

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=95.81  E-value=0.11  Score=43.55  Aligned_cols=41  Identities=29%  Similarity=0.368  Sum_probs=34.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~   93 (206)
                      .|++++|.| ++++|.++++.+..+|+ +|+.++++.++.+.+
T Consensus       190 ~g~~VlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a  231 (373)
T cd08299         190 PGSTCAVFG-LGGVGLSAIMGCKAAGASRIIAVDINKDKFAKA  231 (373)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            478999996 58999999988889998 799999988776655

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.81  E-value=0.011  Score=40.09  Aligned_cols=38  Identities=21%  Similarity=0.249  Sum_probs=32.6

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      ++++||.++|.|| |.+|..-++.|.+.|++|.+++...
T Consensus         3 l~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    3 LDLKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             E--TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch
Confidence            5678999999999 6899999999999999999999986

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.80  E-value=0.088  Score=43.22  Aligned_cols=36  Identities=25%  Similarity=0.419  Sum_probs=31.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .|.+++|.|+++++|.++++.....|++++.++++.
T Consensus       177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~  212 (350)
T cd08274         177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA  212 (350)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch
Confidence            478999999999999999888889999998887654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.80  E-value=0.033  Score=45.27  Aligned_cols=42  Identities=29%  Similarity=0.324  Sum_probs=36.6

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK   91 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~   91 (206)
                      .++.+++++|.|. |++|+.+++.+.+.|++|.+.+|+.++.+
T Consensus       148 ~~l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~  189 (296)
T PRK08306        148 ITIHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLA  189 (296)
T ss_pred             CCCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            4567999999998 67999999999999999999999976543

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=95.78  E-value=0.059  Score=44.35  Aligned_cols=89  Identities=16%  Similarity=0.224  Sum_probs=55.4

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh-hHHHHH----HHHHHhcCCceEEEEEEecCCCchHHH-H
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD-KLKDVS----DSIQAKYAKTQIKSVVVDFSGDLDEGV-E  122 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~-~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~-~  122 (206)
                      .+++||++-|.|- |.||+++|+.+...|++|...+|++. ..++..    -.+.+......+..+.|-.+.+-...+ +
T Consensus       142 ~~l~gktvGIiG~-GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~  220 (324)
T COG1052         142 FDLRGKTLGIIGL-GRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINA  220 (324)
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCH
Confidence            3578999999998 58999999999999999999998863 111100    002222234556677776665433333 4


Q ss_pred             HHHHHhcCCCccEEEEec
Q 028656          123 RIKEAIEGLDVGVLINNV  140 (206)
Q Consensus       123 ~~~~~~~~~~id~lvnnA  140 (206)
                      +..+..+.--  ++||.+
T Consensus       221 ~~l~~mk~ga--~lVNta  236 (324)
T COG1052         221 EELAKMKPGA--ILVNTA  236 (324)
T ss_pred             HHHHhCCCCe--EEEECC
Confidence            4444444422  555543

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.76  E-value=0.028  Score=43.05  Aligned_cols=38  Identities=16%  Similarity=0.254  Sum_probs=34.2

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      ++++||.++|.|| |.+|...++.|.+.|++|++++++.
T Consensus         6 l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~   43 (202)
T PRK06718          6 IDLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL   43 (202)
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            5678999999999 6899999999999999999998764

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=95.76  E-value=0.13  Score=41.39  Aligned_cols=78  Identities=27%  Similarity=0.397  Sum_probs=48.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCc-EEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLN-LVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .+.+++|.| ++++|.++++.....|++ |+++++++++.+ ..+++     +.. ..+  +-.+  .+..+.+.+..++
T Consensus       129 ~~~~vlI~g-~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~-~~~~~-----g~~-~~~--~~~~--~~~~~~l~~~~~~  196 (312)
T cd08269         129 AGKTVAVIG-AGFIGLLFLQLAAAAGARRVIAIDRRPARLA-LAREL-----GAT-EVV--TDDS--EAIVERVRELTGG  196 (312)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHH-HHHHh-----CCc-eEe--cCCC--cCHHHHHHHHcCC
Confidence            478899996 589999999888889999 988888876554 22222     111 111  1111  1333444444443


Q ss_pred             CCccEEEEecc
Q 028656          131 LDVGVLINNVG  141 (206)
Q Consensus       131 ~~id~lvnnAg  141 (206)
                      .++|+++++.|
T Consensus       197 ~~vd~vld~~g  207 (312)
T cd08269         197 AGADVVIEAVG  207 (312)
T ss_pred             CCCCEEEECCC
Confidence            35778888865

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=95.75  E-value=0.11  Score=43.20  Aligned_cols=42  Identities=26%  Similarity=0.287  Sum_probs=34.4

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDV   93 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~   93 (206)
                      ..|.+++|.|+ +++|...++.....|+ +|+.+++++++.+.+
T Consensus       183 ~~g~~vlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~  225 (365)
T cd08277         183 EPGSTVAVFGL-GAVGLSAIMGAKIAGASRIIGVDINEDKFEKA  225 (365)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence            34889999975 8999999888888898 699999988776544

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=95.75  E-value=0.11  Score=42.64  Aligned_cols=82  Identities=26%  Similarity=0.342  Sum_probs=50.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCc-EEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc-hHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLN-LVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL-DEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~  128 (206)
                      ..|++++|.| ++++|.+.++.+...|++ |+.+++++++.+.+ +++    +...  .+  |..+.. ....+.+.+..
T Consensus       161 ~~g~~vlI~g-~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~-~~~----g~~~--vi--~~~~~~~~~~~~~~~~~~  230 (343)
T cd05285         161 RPGDTVLVFG-AGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFA-KEL----GATH--TV--NVRTEDTPESAEKIAELL  230 (343)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHc----CCcE--Ee--ccccccchhHHHHHHHHh
Confidence            3478999986 479999988888888998 88888887665433 222    1111  11  222110 01234455555


Q ss_pred             cCCCccEEEEeccc
Q 028656          129 EGLDVGVLINNVGI  142 (206)
Q Consensus       129 ~~~~id~lvnnAg~  142 (206)
                      ++.++|+++++.|.
T Consensus       231 ~~~~~d~vld~~g~  244 (343)
T cd05285         231 GGKGPDVVIECTGA  244 (343)
T ss_pred             CCCCCCEEEECCCC
Confidence            54457789988764

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=95.74  E-value=0.063  Score=44.17  Aligned_cols=88  Identities=18%  Similarity=0.221  Sum_probs=55.7

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH------HHHHhcCCceEEEEEEecCCCchHHH-H
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD------SIQAKYAKTQIKSVVVDFSGDLDEGV-E  122 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~------~~~~~~~~~~~~~~~~d~~~~~~~~~-~  122 (206)
                      ++.||++.|.|. |+||.++|++|...|..+.-..|...+.++..+      .+.+......+..+.|-++.+-...+ +
T Consensus       159 ~~~gK~vgilG~-G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk  237 (336)
T KOG0069|consen  159 DLEGKTVGILGL-GRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINK  237 (336)
T ss_pred             cccCCEEEEecC-cHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhH
Confidence            367999999999 589999999999999555556665443333221      12222234556666666665433444 5


Q ss_pred             HHHHHhcCCCccEEEEec
Q 028656          123 RIKEAIEGLDVGVLINNV  140 (206)
Q Consensus       123 ~~~~~~~~~~id~lvnnA  140 (206)
                      ++.++.+.--  ++||+|
T Consensus       238 ~~~~~mk~g~--vlVN~a  253 (336)
T KOG0069|consen  238 KFIEKMKDGA--VLVNTA  253 (336)
T ss_pred             HHHHhcCCCe--EEEecc
Confidence            6666666533  677765

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.72  E-value=0.039  Score=44.44  Aligned_cols=44  Identities=16%  Similarity=0.306  Sum_probs=37.2

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK   91 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~   91 (206)
                      ..++.||.++|.|.|.-+|+.++..|.++|++|.++......+.
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~  195 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS  195 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH
Confidence            35678999999999999999999999999999998765544443

>PRK07877 hypothetical protein; Provisional

Probab=95.70  E-value=0.077  Score=48.22  Aligned_cols=65  Identities=18%  Similarity=0.114  Sum_probs=51.0

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCC--CcEEEEEcC------------------hhhHHHHHHHHHHhcCCceEE
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRN------------------PDKLKDVSDSIQAKYAKTQIK  107 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~------------------~~~~~~~~~~~~~~~~~~~~~  107 (206)
                      .-++++.+|+|.|+  |+|..++..|++.|  .++.++|.+                  ..|.+.+++.+.+.++..++.
T Consensus       102 Q~~L~~~~V~IvG~--GlGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~  179 (722)
T PRK07877        102 QERLGRLRIGVVGL--SVGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVE  179 (722)
T ss_pred             HHHHhcCCEEEEEe--cHHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEE
Confidence            44578999999999  39999999999998  389998875                  245555667777777888888


Q ss_pred             EEEEecC
Q 028656          108 SVVVDFS  114 (206)
Q Consensus       108 ~~~~d~~  114 (206)
                      .+...++
T Consensus       180 ~~~~~i~  186 (722)
T PRK07877        180 VFTDGLT  186 (722)
T ss_pred             EEeccCC
Confidence            7776665

>PRK06223 malate dehydrogenase; Reviewed

Probab=95.70  E-value=0.19  Score=40.97  Aligned_cols=43  Identities=21%  Similarity=0.225  Sum_probs=34.6

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~   97 (206)
                      +++.|.|+ |.+|..++..++..|. +|++.|++++.++....++
T Consensus         3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl   46 (307)
T PRK06223          3 KKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDI   46 (307)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHH
Confidence            46889998 8889999999998864 9999999888765544444

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=95.69  E-value=0.15  Score=41.76  Aligned_cols=77  Identities=26%  Similarity=0.452  Sum_probs=49.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .+++++|.| ++++|.++++.+..+|. +|+++++++++...+ +++     +..  .  .+..+.  +..+.+.+..++
T Consensus       167 ~~~~vlI~g-~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~-~~~-----g~~--~--~~~~~~--~~~~~l~~~~~~  233 (344)
T cd08284         167 PGDTVAVIG-CGPVGLCAVLSAQVLGAARVFAVDPVPERLERA-AAL-----GAE--P--INFEDA--EPVERVREATEG  233 (344)
T ss_pred             cCCEEEEEC-CcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHH-HHh-----CCe--E--EecCCc--CHHHHHHHHhCC
Confidence            488999996 68999999999999996 788887776554332 222     221  1  222222  233445555554


Q ss_pred             CCccEEEEecc
Q 028656          131 LDVGVLINNVG  141 (206)
Q Consensus       131 ~~id~lvnnAg  141 (206)
                      .++|+++++.|
T Consensus       234 ~~~dvvid~~~  244 (344)
T cd08284         234 RGADVVLEAVG  244 (344)
T ss_pred             CCCCEEEECCC
Confidence            45779998876

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PRK08655 prephenate dehydrogenase; Provisional

Probab=95.68  E-value=0.031  Score=47.93  Aligned_cols=40  Identities=38%  Similarity=0.626  Sum_probs=34.6

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS   94 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~   94 (206)
                      ++.|.||.|++|.++++.+.+.|++|.+.+|+++...+..
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a   41 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVA   41 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHH
Confidence            5889999999999999999999999999999977654433

>cd08251 polyketide_synthase polyketide synthase

Probab=95.67  E-value=0.13  Score=40.94  Aligned_cols=42  Identities=21%  Similarity=0.242  Sum_probs=36.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .|.+++|.|+++++|.++++.....|++|+.+.++.++.+.+
T Consensus       120 ~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~  161 (303)
T cd08251         120 KGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYL  161 (303)
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            478999999999999999888888999999998887665544

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=95.64  E-value=0.15  Score=41.94  Aligned_cols=41  Identities=15%  Similarity=0.229  Sum_probs=34.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKD   92 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~   92 (206)
                      ..+++++|.|+++++|.++++....+|++|+.+. +.++.+.
T Consensus       153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~~~~~~  193 (339)
T cd08249         153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-SPKNFDL  193 (339)
T ss_pred             CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-CcccHHH
Confidence            4689999999999999999988889999998877 4455443

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.64  E-value=0.42  Score=42.35  Aligned_cols=40  Identities=20%  Similarity=0.424  Sum_probs=33.8

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS   94 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~   94 (206)
                      .+++|.|+ |.+|++++++|.++|.++++++.|+++.++..
T Consensus       418 ~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~  457 (558)
T PRK10669        418 NHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRTRVDELR  457 (558)
T ss_pred             CCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence            45677776 58999999999999999999999998876654

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=95.61  E-value=0.12  Score=41.69  Aligned_cols=62  Identities=15%  Similarity=0.202  Sum_probs=47.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEEEE
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIKSV  109 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~  109 (206)
                      ++.+.+|+|.|+ +|+|.++++.|+..|. ++.+.|.+                   ..+.+..++.+++.++..++...
T Consensus        16 kL~~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~   94 (286)
T cd01491          16 KLQKSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVS   94 (286)
T ss_pred             HHhcCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEE
Confidence            467889999988 5999999999999997 68887753                   24556667777887777777666


Q ss_pred             EEe
Q 028656          110 VVD  112 (206)
Q Consensus       110 ~~d  112 (206)
                      ..+
T Consensus        95 ~~~   97 (286)
T cd01491          95 TGP   97 (286)
T ss_pred             ecc
Confidence            543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=95.61  E-value=0.14  Score=42.26  Aligned_cols=40  Identities=20%  Similarity=0.206  Sum_probs=33.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCc-EEEEEcChhhHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLN-LVLVGRNPDKLKD   92 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~-V~~~~r~~~~~~~   92 (206)
                      .|++++|+|+ +++|...++.....|++ |+.+++++++.+.
T Consensus       160 ~g~~vlV~G~-g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~  200 (347)
T PRK10309        160 EGKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDINSEKLAL  200 (347)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHH
Confidence            4789999974 89999999888889997 6778888877654

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.58  E-value=0.034  Score=47.37  Aligned_cols=43  Identities=23%  Similarity=0.289  Sum_probs=37.3

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK   91 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~   91 (206)
                      +..+.|++++|.|. |.+|+.+++.+...|++|+++++++.+..
T Consensus       207 ~~~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~  249 (425)
T PRK05476        207 NVLIAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICAL  249 (425)
T ss_pred             cCCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhH
Confidence            34568999999998 58999999999999999999999876643

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.56  E-value=0.07  Score=45.37  Aligned_cols=38  Identities=13%  Similarity=0.187  Sum_probs=34.1

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      ..+.||++.|.|- |.||+++|+.+...|++|+..++..
T Consensus       147 ~~L~gktvGIiG~-G~IG~~vA~~~~~fGm~V~~~d~~~  184 (409)
T PRK11790        147 FEVRGKTLGIVGY-GHIGTQLSVLAESLGMRVYFYDIED  184 (409)
T ss_pred             ccCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCc
Confidence            3588999999998 6899999999999999999998754

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.56  E-value=0.041  Score=46.71  Aligned_cols=45  Identities=22%  Similarity=0.284  Sum_probs=38.7

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      +..+.|++++|.|++ .||+.+++.+...|++|+++++++.+++..
T Consensus       197 ~~~l~GktVvViG~G-~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A  241 (413)
T cd00401         197 DVMIAGKVAVVAGYG-DVGKGCAQSLRGQGARVIVTEVDPICALQA  241 (413)
T ss_pred             CCCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEECChhhHHHH
Confidence            445679999999996 899999999999999999999998776543

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.53  E-value=0.069  Score=41.14  Aligned_cols=47  Identities=26%  Similarity=0.245  Sum_probs=37.5

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh-hhHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-DKLKDVSD   95 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~-~~~~~~~~   95 (206)
                      .++++||.|+|.||+ ..|..=++.|++.|++|++++... +.+....+
T Consensus         7 ~~~l~~k~VlvvGgG-~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~   54 (210)
T COG1648           7 FLDLEGKKVLVVGGG-SVALRKARLLLKAGADVTVVSPEFEPELKALIE   54 (210)
T ss_pred             EEEcCCCEEEEECCC-HHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHH
Confidence            356889999999995 678888999999999999988776 44444443

>PRK14852 hypothetical protein; Provisional

Probab=95.52  E-value=0.12  Score=48.26  Aligned_cols=66  Identities=23%  Similarity=0.293  Sum_probs=51.5

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEE
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIK  107 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~  107 (206)
                      .-++++.+|+|.|+ ||+|..+++.|+..|. ++.++|.+                   ..+.+..++.+++.++..++.
T Consensus       327 Q~kL~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~  405 (989)
T PRK14852        327 QRRLLRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIR  405 (989)
T ss_pred             HHHHhcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEE
Confidence            34578999999996 5999999999999996 77777664                   245666777778877888888


Q ss_pred             EEEEecC
Q 028656          108 SVVVDFS  114 (206)
Q Consensus       108 ~~~~d~~  114 (206)
                      .+...++
T Consensus       406 ~~~~~I~  412 (989)
T PRK14852        406 SFPEGVA  412 (989)
T ss_pred             EEecCCC
Confidence            8776654

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.51  E-value=0.55  Score=38.38  Aligned_cols=43  Identities=23%  Similarity=0.307  Sum_probs=35.2

Q ss_pred             EEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQ   98 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~   98 (206)
                      .+.|.|+ |.+|.+++..++.+|  .+|++++++.++.+....++.
T Consensus         2 kI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~   46 (308)
T cd05292           2 KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLA   46 (308)
T ss_pred             EEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHH
Confidence            4788888 799999999999999  589999999887765444454

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=95.50  E-value=0.044  Score=44.51  Aligned_cols=42  Identities=31%  Similarity=0.311  Sum_probs=36.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .+++++|.|+++++|.++++....+|++|+.+++++++.+.+
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~  187 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYL  187 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHH
Confidence            468999999999999999888888999999999988776554

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	206
3t4x_A	267	Short Chain DehydrogenaseREDUCTASE FAMILY OXIDOREDU		9e-12
2pnf_A	248	Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl-		2e-10
1yb1_A	272	Crystal Structure Of Human 17-Beta-Hydroxysteroid D		4e-08
3f5q_A	262	Crystal Structure Of Putative Short Chain Dehydroge		7e-08
3ai1_A	263	The Crystal Structure Of L-Sorbose Reductase From G		7e-08
1xkq_A	280	Crystal Structure Of Short-Chain DehydrogenaseREDUC		2e-07
3ai3_A	263	The Crystal Structure Of L-Sorbose Reductase From G		3e-07
3rih_A	293	Crystal Structure Of A Putative Short Chain Dehydro		5e-07
3sj7_A	252	Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) F		5e-07
3f1l_A	252	The 0.95 A Structure Of An Oxidoreductase, Ycik Fro		6e-07
3rku_A	287	Substrate Fingerprint And The Structure Of Nadp+ De		6e-07
2yz7_A	260	X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase F		7e-07
4b79_A	242	The Aeropath Project And Pseudomonas Aeruginosa Hig		8e-07
3g1t_A	258	Crystal Structure Of Short Chain Dehydrogenase From		9e-07
3asu_A	248	Crystal Structure Of Serine Dehydrogenase From Esch		1e-06
3f5s_A	255	Crystal Structure Of Putatitve Short Chain Dehydrog		1e-06
3s55_A	281	Crystal Structure Of A Putative Short-Chain Dehydro		2e-06
3rkr_A	262	Crystal Structure Of A Metagenomic Short-Chain Oxid		3e-06
1geg_A	256	Cryatal Structure Analysis Of Meso-2,3-Butanediol D		5e-06
3osu_A	246	Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Pro		5e-06
3grp_A	266	2.1 Angstrom Crystal Structure Of 3-Ketoacyl-(Acyl-		5e-06
1xhl_A	297	Crystal Structure Of Putative Tropinone Reductase-I		7e-06
4ibo_A	271	Crystal Structure Of A Putative Gluconate Dehydroge		9e-06
2zat_A	260	Crystal Structure Of A Mammalian Reductase Length =		9e-06
2nwq_A	272	Short Chain Dehydrogenase From Pseudomonas Aerugino		1e-05
4egf_A	266	Crystal Structure Of A L-Xylulose Reductase From My		1e-05
3rsh_A	251	Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reduc		1e-05
3tzc_A	251	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		1e-05
3tzh_A	251	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		2e-05
4g81_D	255	Crystal Structure Of A Hexonate Dehydrogenase Ortho		2e-05
1yxm_A	303	Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa		2e-05
4dc0_A	281	Crystal Structure Of F189w Actinorhodin Polyketide		2e-05
1vl8_A	267	Crystal Structure Of Gluconate 5-dehydrogenase (tm0		2e-05
4dbz_A	281	Crystal Structure Of V151l Actinorhodin Polyketide		2e-05
1spx_A	278	Crystal Structure Of Glucose Dehydrogenase Of Caeno		2e-05
2jap_A	247	Clavulanic Acid Dehydrogenase: Structural And Bioch		2e-05
4dc1_A	281	Crystal Structure Of Y202f Actinorhodin Polyketide		2e-05
1w4z_A	281	Structure Of Actinorhodin Polyketide (Actiii) Reduc		2e-05
2rh4_A	277	Actinorhodin Ketoreductase, Actkr, With Nadph And I		2e-05
1x7g_A	261	Actinorhodin Polyketide Ketoreductase, Act Kr, With		2e-05
3uf0_A	273	Crystal Structure Of A Putative Nad(P) Dependent Gl		3e-05
3v2h_A	281	The Crystal Structure Of D-Beta-Hydroxybutyrate Deh		4e-05
3lz6_A	263	Guinea Pig 11beta Hydroxysteroid Dehydrogenase With		4e-05
4bb6_A	292	Free-Wilson And Structural Approaches To Co-Optimis		4e-05
4bb5_A	292	Free-Wilson And Structural Approaches To Co-Optimis		4e-05
3g49_A	277	N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of 11b-		5e-05
1edo_A	244	The X-Ray Structure Of Beta-Keto Acyl Carrier Prote		5e-05
1xse_A	295	Crystal Structure Of Guinea Pig 11beta-Hydroxystero		5e-05
3dwf_A	276	Crystal Structure Of The Guinea Pig 11beta-Hydroxys		5e-05
4imr_A	275	Crystal Structure Of 3-oxoacyl (acyl-carrier-protei		5e-05
2q2q_A	255	Structure Of D-3-Hydroxybutyrate Dehydrogenase From		6e-05
3tzk_A	251	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		6e-05
2bel_A	283	Structure Of Human 11-Beta-Hydroxysteroid Dehydroge		6e-05
2jah_A	247	Biochemical And Structural Analysis Of The Clavulan		6e-05
3iah_A	256	Crystal Structure Of Short Chain Dehydrogenase (yci		7e-05
2irw_A	264	Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) W		7e-05
3f1k_A	252	Crystal Structure Of Ycik From E. Coli, An Oxidored		8e-05
2rbe_A	275	The Discovery Of 2-Anilinothiazolones As 11beta-Hsd		8e-05
1xu7_A	286	Crystal Structure Of The Interface Open Conformatio		8e-05
3d5q_A	272	Crystal Structure Of 11b-Hsd1 In Complex With Triaz		8e-05
3o4r_A	261	Crystal Structure Of Human DehydrogenaseREDUCTASE (		8e-05
2ilt_A	275	Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) W		8e-05
3pdj_A	273	Crystal Structure Of Human 11-Beta-Hydroxysteroid D		9e-05
3u09_A	251	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		1e-04
2b4q_A	276	Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex		1e-04
2uvd_A	246	The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier		1e-04
2wdz_A	254	Crystal Structure Of The Short Chain Dehydrogenase		1e-04
3ch6_A	286	Crystal Structure Of 11beta-Hsd1 Double Mutant (L26		1e-04
4hfr_A	272	Human 11beta-Hydroxysteroid Dehydrogenase Type 1 In		1e-04
1q7c_A	244	The Structure Of Betaketoacyl-[acp] Reductase Y151f		1e-04
2cf2_E	226	Architecture Of Mammalian Fatty Acid Synthase Lengt		1e-04
1i01_A	244	Crystal Structure Of Beta-Ketoacyl [acyl Carrier Pr		1e-04
2z1n_A	260	Crystal Structure Of Ape0912 From Aeropyrum Pernix		2e-04
3e9q_A	273	Crystal Structure Of The Short Chain Dehydrogenase		2e-04
3l77_A	235	X-Ray Structure Alcohol Dehydrogenase From Archaeon		2e-04
3tn7_A	257	Crystal Structure Of Short-Chain Alcohol Dehydrogen		2e-04
3qiv_A	253	Crystal Structure Of A Putative Short-Chain Dehydro		2e-04
1y5m_A	276	The Crystal Structure Of Murine 11b-Hydroxysteroid		3e-04
3gmd_A	264	Structure-Based Design Of 7-Azaindole-Pyrrolidines		3e-04
2hq1_A	247	Crystal Structure Of Orf 1438 A Putative GlucoseRIB		3e-04
3nug_A	247	Crystal Structure Of Wild Type Tetrameric Pyridoxal		3e-04
2qq5_A	260	Crystal Structure Of Human Sdr Family Member 1 Leng		3e-04
3oml_A	613	Structure Of Full-Length Peroxisomal Multifunctiona		3e-04
3csd_B	281	Actinorhodin Polyketide Ketoreductase Mutant P94l B		3e-04
2rhr_B	277	P94l Actinorhodin Ketordeuctase Mutant, With Nadph		4e-04
3kvo_A	346	Crystal Structure Of The Catalytic Domain Of Human		5e-04
3cxr_A	291	Crystal Structure Of Gluconate 5-Dehydrogase From S		5e-04
1o5i_A	249	Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei		5e-04
2cfc_A	250	Structural Basis For Stereo Selectivity In The (R)-		6e-04
1ahi_A	255	7 Alpha-Hydroxysteroid Dehydrogenase Complexed With		6e-04
2c07_A	285	Oxoacyl-Acp Reductase Of Plasmodium Falciparum Leng		7e-04
3ndr_A	247	Crystal Structure Of Tetrameric Pyridoxal 4-Dehydro		7e-04
3oec_A	317	Crystal Structure Of Carveol Dehydrogenase From Myc		8e-04
3pk0_A	262	Crystal Structure Of Short-Chain DehydrogenaseREDUC		8e-04
4afn_A	269	Crystal Structure Of 3-ketoacyl-(acyl-carrier-prote		9e-04

>pdb|3T4X|A Chain A, Short Chain DehydrogenaseREDUCTASE FAMILY OXIDOREDUCTASE FROM Bacillus Anthracis Str. Ames Ancestor Length = 267

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 7/154 (4%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG T GIGK+ A  L   G N+++ GR  + + +    I+A+Y    ++ VV D
Sbjct: 10  GKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVAD 69
Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
                ++G + + E    +D  +LINN+GI  P   +F   D+   K L +VN+    ++
Sbjct: 70  LG--TEQGCQDVIEKYPKVD--ILINNLGIFEP-VEYFDIPDEDWFK-LFEVNIXSGVRL 123
Query: 173 TQAVLPGMLKRKKGLSMLNIGKAELMCSVRF-HY 205
           T++ L   ++RK+G  +    +A +  S    HY
Sbjct: 124 TRSYLKKXIERKEGRVIFIASEAAIXPSQEXAHY 157

>pdb|2PNF|A Chain A, Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl-carrier Protein) Reductase Length = 248

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 78/138 (56%), Gaps = 11/138 (7%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  +LVTG T GIG++ A +LA  G  +++ G + ++ K V++ I  KY    +K+  V+
Sbjct: 7   GKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYG---VKAHGVE 63
Query: 113 FS----GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEG 168
            +      +++  E I   ++G+D  +L+NN GI+    + F  +  +  + ++KVN+ G
Sbjct: 64  MNLLSEESINKAFEEIYNLVDGID--ILVNNAGITRD--KLFLRMSLLDWEEVLKVNLTG 119
Query: 169 TTKVTQAVLPGMLKRKKG 186
           T  VTQ  L  M+K++ G
Sbjct: 120 TFLVTQNSLRKMIKQRWG 137

>pdb|1YB1|A Chain A, Crystal Structure Of Human 17-Beta-Hydroxysteroid Dehydrogenase Type Xi Length = 272

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 9/168 (5%)
Query: 38  VYVNFLRPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI 97
           +Y     P +     G   L+TG   GIG+  A++ AK    LVL   N   L++ +   
Sbjct: 16  LYFQGHMPKRRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC 75
Query: 98  QAKYAKTQIKSVVVDFSG--DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQ 155
           +   AK  + + VVD S   D+    +++K  I   DV +L+NN G+ Y    F  +  Q
Sbjct: 76  KGLGAK--VHTFVVDCSNREDIYSSAKKVKAEIG--DVSILVNNAGVVYTSDLFATQDPQ 131
Query: 156 VLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF 203
           +  +   +VNV      T+A LP M K   G  ++ +  A    SV F
Sbjct: 132 I--EKTFEVNVLAHFWTTKAFLPAMTKNNHG-HIVTVASAAGHVSVPF 176

>pdb|3F5Q|A Chain A, Crystal Structure Of Putative Short Chain Dehydrogenase From Escherichia Coli Cft073 Length = 262

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 12/136 (8%)
Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF--- 113
           LVTG +DGIG+  A   A+ G  ++L+GRN +KL+ V+  I  +  + Q +  ++D    
Sbjct: 18  LVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGR-QPQWFILDLLTC 76
Query: 114 -SGDLDEGVERIKEAIEGLDVGVLINN--VGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
            S D  +  +RI      LD GVL N   +G   P +    E D  + +++++VNV  T 
Sbjct: 77  TSEDCQQLAQRIAVNYPRLD-GVLHNAGLLGDVCPMS----EQDPQVWQDVMQVNVNATF 131
Query: 171 KVTQAVLPGMLKRKKG 186
            +TQA+LP +LK   G
Sbjct: 132 MLTQALLPLLLKSDAG 147

>pdb|3AI1|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Reveals The Structure Bases Of Its Catalytic Mechanism And High Substrate Selectivity Length = 263

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  A++TG + GIG + A   AK G ++VLV R  D+L + + S++ K+   ++  V VD
Sbjct: 7   GKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFG-VRVLEVAVD 65
Query: 113 FSG--DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
            +    +D  VE ++ +  G D  +L+NN G          E      +   +++V    
Sbjct: 66  VATPEGVDAVVESVRSSFGGAD--ILVNNAGTGSN--ETIMEAADEKWQFYWELHVMAAV 121
Query: 171 KVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR 202
           ++ + ++PGM  R  G  + N      +C+V+
Sbjct: 122 RLARGLVPGMRARGGGAIIHNAS----ICAVQ 149

>pdb|1XKQ|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF Unknown Function From Caenorhabditis Elegans With Cofactor Length = 280

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 74/133 (55%), Gaps = 7/133 (5%)
Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI-QAKYAKTQIKSVVVDFSG 115
           ++TG ++GIG++ A   A+ G N+ + GR+ ++L++    I ++  ++ Q+ SVV D + 
Sbjct: 10  IITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVT- 68
Query: 116 DLDEGVERIKEAI--EGLDVGVLINNVGISYPYARFFHEVDQ--VLLKNLIKVNVEGTTK 171
             ++G ++I  +   +   + VL+NN G + P A      DQ   +    +K+N++   +
Sbjct: 69  -TEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIE 127
Query: 172 VTQAVLPGMLKRK 184
           +T+ V P ++  K
Sbjct: 128 MTKKVKPHLVASK 140

>pdb|3AI3|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Length = 263

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 11/152 (7%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  A++TG + GIG + A   AK G ++VLV R  D+L + + S++ K+   ++  V VD
Sbjct: 7   GKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFG-VRVLEVAVD 65
Query: 113 FSG--DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
            +    +D  VE ++ +  G D  +L+NN G          E      +   ++ V    
Sbjct: 66  VATPEGVDAVVESVRSSFGGAD--ILVNNAGTGSN--ETIMEAADEKWQFYWELLVMAAV 121
Query: 171 KVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR 202
           ++ + ++PGM  R  G  + N      +C+V+
Sbjct: 122 RLARGLVPGMRARGGGAIIHNAS----ICAVQ 149

>pdb|3RIH|A Chain A, Crystal Structure Of A Putative Short Chain Dehydrogenase Or Reductase From Mycobacterium Abscessus Length = 293

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS-- 114
           LVTG T GIG+  A   A+ G N+ +  R+P +L  V+  +  +     +  V +D S  
Sbjct: 45  LVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAEL-GELGAGNVIGVRLDVSDP 103
Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
           G   +    + +A   LD  V+  N GI +P AR      +  L  ++ VNV+GT    Q
Sbjct: 104 GSCADAARTVVDAFGALD--VVCANAGI-FPEARLDTMTPE-QLSEVLDVNVKGTVYTVQ 159
Query: 175 AVLPGMLKRKKGLSMLN 191
           A L  +    +G  +L 
Sbjct: 160 ACLAPLTASGRGRVILT 176

>pdb|3SJ7|A Chain A, Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) From Staphylococcus Aureus Complex With Nadph Length = 252

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKYAKT-QIKSVVVDF 113
           ALVTG + GIG+S A QLA+ G N+ +    + +K + V + I+AK   +  I++ V   
Sbjct: 13  ALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVA-- 70
Query: 114 SGDLDEGVERIKEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
             D DE    IKE +     + VL+NN GI+         + +    ++I  N++G    
Sbjct: 71  --DADEVKAMIKEVVSQFGSLDVLVNNAGITRD--NLLMRMKEQEWDDVIDTNLKGVFNC 126
Query: 173 TQAVLPGMLKRKKG 186
            Q   P ML+++ G
Sbjct: 127 IQKATPQMLRQRSG 140

>pdb|3F1L|A Chain A, The 0.95 A Structure Of An Oxidoreductase, Ycik From E.Coli Length = 252

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 8/134 (5%)
Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF--- 113
           LVTG +DGIG+  A   A+ G  ++L+GRN +KL+ V+  I  +  + Q +  ++D    
Sbjct: 16  LVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGR-QPQWFILDLLTC 74
Query: 114 -SGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
            S +  +  +RI      LD GVL +N G+         +  QV  +++++VNV  T  +
Sbjct: 75  TSENCQQLAQRIAVNYPRLD-GVL-HNAGLLGDVCPMSEQNPQV-WQDVMQVNVNATFML 131
Query: 173 TQAVLPGMLKRKKG 186
           TQA+LP +LK   G
Sbjct: 132 TQALLPLLLKSDAG 145

>pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent Serine Dehydrogenase From Saccharomyces Cerevisiae Complexed With Nadp+ Length = 287

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 15/145 (10%)
Query: 57  LVTGPTDGIGKSFAFQL--AKTG-LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF 113
           L+TG + GIGK+ A +   A  G + L+L  R  +KL+++  +I  ++   ++    +D 
Sbjct: 37  LITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDI 96
Query: 114 SGDLDEGVERIKEAIEGL-----DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEG 168
           +       E+IK  IE L     D+ +L+NN G +    R   ++    ++++   NV  
Sbjct: 97  TQ-----AEKIKPFIENLPQEFKDIDILVNNAGKALGSDRV-GQIATEDIQDVFDTNVTA 150
Query: 169 TTKVTQAVLPGMLKRKKGLSMLNIG 193
              +TQAVLP + + K    ++N+G
Sbjct: 151 LINITQAVLP-IFQAKNSGDIVNLG 174

>pdb|2YZ7|A Chain A, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Length = 260

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 22/159 (13%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVV 111
           G  A+VTG T GIG + A +LAK G ++V+ G   P+ ++    ++++K+    +K+  +
Sbjct: 4   GKKAVVTGSTSGIGLAMATELAKAGADVVINGFGQPEDIERERSTLESKFG---VKAYYL 60
Query: 112 DFSGDLDEG------VERIKEAIEGLDVGVLINNVGISY--PYARFFHEVDQVLLKNLIK 163
           +   DL +       + +  EA+ GLD  +L+NN GI +  P   F   VD+     +I 
Sbjct: 61  N--ADLSDAQATRDFIAKAAEALGGLD--ILVNNAGIQHTAPIEEF--PVDK--WNAIIA 112
Query: 164 VNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE-LMCSV 201
           +N+      T A LP M K+  G  ++NI  A  L+ SV
Sbjct: 113 LNLSAVFHGTAAALPIMQKQGWG-RIINIASAHGLVASV 150

>pdb|4B79|A Chain A, The Aeropath Project And Pseudomonas Aeruginosa High-throughput Crystallographic Studies For Assessment Of Potential Targets In Early Stage Drug Discovery. Length = 242

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G   LVTG + GIG + A Q A+ G  +V +G +       +D + A     +I+   +D
Sbjct: 11  GQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLD-------ADGVHAPR-HPRIRREELD 62
Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
            +    + ++R+ EA+  LD  VL+NN GIS    R   E D    + ++++N+      
Sbjct: 63  ITD--SQRLQRLFEALPRLD--VLVNNAGIS----RDREEYDLATFERVLRLNLSAAMLA 114
Query: 173 TQAVLPGMLKRKKGLSMLNI 192
           +Q   P  L  ++G S+LNI
Sbjct: 115 SQLARP--LLAQRGGSILNI 132

>pdb|3G1T|A Chain A, Crystal Structure Of Short Chain Dehydrogenase From Salmonella Enterica Subsp. Enterica Serovar Typhi Str. Ct18 Length = 258

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF--- 113
           LVTG +DGIG+  A   A+ G  ++L+GRN +KL+ V+  I A     Q +   +D    
Sbjct: 18  LVTGASDGIGREAALTYARYGATVILLGRNEEKLRRVAQHI-ADEQHVQPQWFTLDLLTC 76
Query: 114 -SGDLDEGVERIKEAIEGLDVGVLINN--VGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
            + +  +  +RI      LD GVL N   +G   P +    E D  + +++++VNV  T 
Sbjct: 77  TAEECRQVADRIAAHYPRLD-GVLHNAGLLGEIGPMS----EQDPQIWQDVMQVNVNATF 131
Query: 171 KVTQAVLPGMLKRKKG 186
            +TQA+LP +LK   G
Sbjct: 132 MLTQALLPLLLKSDAG 147

>pdb|3ASU|A Chain A, Crystal Structure Of Serine Dehydrogenase From Escherichia Coli Length = 248

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           LVTG T G G+    +  + G  ++  GR  ++L+++ D +       Q+    V     
Sbjct: 4   LVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLD---VRNRAA 60
Query: 117 LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAV 176
           ++E +  +    E  ++ +L+NN G++       H+      + +I  N +G   +T+AV
Sbjct: 61  IEEMLASLP--AEWCNIDILVNNAGLALGM-EPAHKASVEDWETMIDTNNKGLVYMTRAV 117
Query: 177 LPGMLKRKKGLSMLNIGK 194
           LPGM++R  G  ++NIG 
Sbjct: 118 LPGMVERNHG-HIINIGS 134

>pdb|3F5S|A Chain A, Crystal Structure Of Putatitve Short Chain Dehydrogenase From Shigella Flexneri 2a Str. 301 Length = 255

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 8/134 (5%)
Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           LVTG +DGIG+  A   A+ G  ++L+GRN +KL+ V+  I  +  + Q +  ++D    
Sbjct: 14  LVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGR-QPQWFILDLLTC 72
Query: 117 LDEGVERIKEAI----EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
             E  +++ + I      LD GVL +N G+         +  QV  ++++++NV  T  +
Sbjct: 73  TSENCQQLAQRIVVNYPRLD-GVL-HNAGLLGDVCPMSEQNPQV-WQDVMQINVNATFML 129
Query: 173 TQAVLPGMLKRKKG 186
           TQA+LP +LK   G
Sbjct: 130 TQALLPLLLKSDAG 143

>pdb|3S55|A Chain A, Crystal Structure Of A Putative Short-Chain DehydrogenaseREDUCTASE From Mycobacterium Abscessus Bound To Nad Length = 281

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR--NPD-------KLKDVSDSIQ--AKY 101
           G  AL+TG   G+G+S A  LA+ G ++ +  R  N D          D+++++    K 
Sbjct: 10  GKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKT 69
Query: 102 AKTQIKSVV-VDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKN 160
            +  I + V V     L+  V   ++ + G+D+   I N GIS        EV+      
Sbjct: 70  GRRCISAKVDVKDRAALESFVAEAEDTLGGIDIA--ITNAGIS--TIALLPEVESAQWDE 125
Query: 161 LIKVNVEGTTKVTQAVLPGMLKRKKG 186
           +I  N+ GT     AV PGM+KR  G
Sbjct: 126 VIGTNLTGTFNTIAAVAPGMIKRNYG 151

>pdb|3RKR|A Chain A, Crystal Structure Of A Metagenomic Short-Chain Oxidoreductase (Sdr) In Complex With Nadp Length = 262

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 4/140 (2%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  A+VTG + GIG + A +L   G  +VL  R+ +KL+ V   I A   + +  +  + 
Sbjct: 29  GQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLS 88
Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
            S  +      +  A    D  VL+NN G+ + +    H +       LI VN++    +
Sbjct: 89  HSDAIAAFATGVLAAHGRCD--VLVNNAGVGW-FGGPLHTMKPAEWDALIAVNLKAPYLL 145
Query: 173 TQAVLPGMLKRKKGLSMLNI 192
            +A  P M+  K+G  ++NI
Sbjct: 146 LRAFAPAMIAAKRG-HIINI 164

>pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol Dehydrogenase Length = 256

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG   GIGK+ A +L K G  + +   N    K V+  I    A     +V VD S 
Sbjct: 5   ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEIN--QAGGHAVAVKVDVS- 61
Query: 116 DLDE---GVERIKEAIEGLDVGVLINNVGI--SYPYARFFHEVDQVLLKNLIKVNVEGTT 170
           D D+    VE+ ++ + G D  V++NN G+  S P      E+    +  +  +NV+G  
Sbjct: 62  DRDQVFAAVEQARKTLGGFD--VIVNNAGVAPSTPIESITPEI----VDKVYNINVKGVI 115
Query: 171 KVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH 204
              QA +    K   G  ++N       CS   H
Sbjct: 116 WGIQAAVEAFKKEGHGGKIIN------ACSQAGH 143

>pdb|3OSU|A Chain A, Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Protein Reductase, Fabg, From Staphylococcus Aureus Length = 246

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKYAKT-QIKSVVVDF 113
           ALVTG + GIG+S A QLA+ G N+ +    + +K + V + I+AK   +  I++ V   
Sbjct: 7   ALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVA-- 64
Query: 114 SGDLDEGVERIKEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
             D DE    IKE +     + VL+NN GI+           +    ++I  N++G    
Sbjct: 65  --DADEVKAXIKEVVSQFGSLDVLVNNAGITRD--NLLXRXKEQEWDDVIDTNLKGVFNC 120
Query: 173 TQAVLPGMLKRKKG 186
            Q   P  L+++ G
Sbjct: 121 IQKATPQXLRQRSG 134

>pdb|3GRP|A Chain A, 2.1 Angstrom Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Bartonella Henselae Length = 266

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 19/148 (12%)
Query: 45  PAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKT 104
           P    +  G  ALVTG T GIG++ A      G  + L G   DKLK+++  +       
Sbjct: 19  PGSMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLG------ 72
Query: 105 QIKSVVVDFSGDLDEG------VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLL 158
             K V V FS +L +        E  +  +EG+D  +L+NN GI+     F    DQ   
Sbjct: 73  --KDVFV-FSANLSDRKSIKQLAEVAEREMEGID--ILVNNAGITRD-GLFVRMQDQD-W 125
Query: 159 KNLIKVNVEGTTKVTQAVLPGMLKRKKG 186
            +++ VN+   + +T+ ++  M++R+ G
Sbjct: 126 DDVLAVNLTAASTLTRELIHSMMRRRYG 153

>pdb|1XHL|A Chain A, Crystal Structure Of Putative Tropinone Reductase-Ii From Caenorhabditis Elegans With Cofactor And Substrate Length = 297

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Query: 44  RPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI-QAKYA 102
           R +   R  G   ++TG ++GIG+S A   AK G  + + GRN D+L++    I +A   
Sbjct: 17  RGSHMARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVP 76
Query: 103 KTQIKSVVVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKN 160
             +I +VV D +     D+ +         +D  +L+NN G +        +    L + 
Sbjct: 77  AEKINAVVADVTEASGQDDIINTTLAKFGKID--ILVNNAGANLADGTANTDQPVELYQK 134
Query: 161 LIKVNVEGTTKVTQAVLPGMLKRK 184
             K+N +   ++TQ     ++K K
Sbjct: 135 TFKLNFQAVIEMTQKTKEHLIKTK 158

>pdb|4IBO|A Chain A, Crystal Structure Of A Putative Gluconate Dehydrogenase From Agrobacterium Tumefaciens (Target Efi-506446) Length = 271

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 11/145 (7%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQA-KYAKTQIKSVVV 111
           G  ALVTG + G+G++ A  LA  G  +++ G +P +   V+ ++Q  +      ++V  
Sbjct: 26  GRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSR---VAQTVQEFRNVGHDAEAVAF 82
Query: 112 DFSGDLD--EGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
           D + + +  E   R+ E  +G+DV +L+NN GI   + +   E++    + +I  N+   
Sbjct: 83  DVTSESEIIEAFARLDE--QGIDVDILVNNAGIQ--FRKPMIELETADWQRVIDTNLTSA 138
Query: 170 TKVTQAVLPGMLKRKKGLSMLNIGK 194
             + +     M+ R  G  ++NIG 
Sbjct: 139 FMIGREAAKRMIPRGYG-KIVNIGS 162

>pdb|2ZAT|A Chain A, Crystal Structure Of A Mammalian Reductase Length = 260

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVT  TDGIG + A +LA+ G ++V+  R  + +     ++Q +          V  + 
Sbjct: 17  ALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAE 76
Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           D +  V        G+D  +L++N  ++  +       ++V  K ++ VNV+ T  +T+A
Sbjct: 77  DRERLVAMAVNLHGGVD--ILVSNAAVNPFFGNIIDATEEVWDK-ILHVNVKATVLMTKA 133
Query: 176 VLPGMLKRKKG 186
           V+P M KR  G
Sbjct: 134 VVPEMEKRGGG 144

>pdb|2NWQ|A Chain A, Short Chain Dehydrogenase From Pseudomonas Aeruginosa Length = 272

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF--S 114
            +TG T G G++ A + A+ G +LVL GR  ++L+ ++  +    AKT++  + +D    
Sbjct: 25  FITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELS---AKTRVLPLTLDVRDR 81
Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
                 V+ + E    L    LINN G++          D       +  N++G    T+
Sbjct: 82  AAXSAAVDNLPEEFATLR--GLINNAGLAL-GTDPAQSCDLDDWDTXVDTNIKGLLYSTR 138
Query: 175 AVLPGMLKRKKGLSMLNIGK 194
            +LP ++    G S++N+G 
Sbjct: 139 LLLPRLIAHGAGASIVNLGS 158

>pdb|4EGF|A Chain A, Crystal Structure Of A L-Xylulose Reductase From Mycobacterium Smegmatis Length = 266

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 44  RPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAK 103
           R A  LR  G  AL+TG T GIG   A   A  G  LVL GR+  +L     ++  ++  
Sbjct: 11  RYAGVLRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFG- 69
Query: 104 TQIKSVVVDFSGDLDEGVERIKEAIE---GLDVGVLINNVGISYPYARFFHEVDQVLLKN 160
           T + +V +D + + D   E  + A E   GLD  VL+NN GIS+P  +   + D  L   
Sbjct: 70  TDVHTVAIDLA-EPDAPAELARRAAEAFGGLD--VLVNNAGISHP--QPVVDTDPQLFDA 124
Query: 161 LIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFHY 205
            I VN+     +  AV   M+   +G +++ +  A  +  +  HY
Sbjct: 125 TIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLPDHY 169

>pdb|3RSH|A Chain A, Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reductase (Fabg) From Vibrio Cholerae O1 Complexed With Nadp+ (Space Group P62) Length = 251

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 75/143 (52%), Gaps = 12/143 (8%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + GIGK+ A  LA+ G  ++    +    + +SD     Y     K + ++
Sbjct: 12  GKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISD-----YLGDNGKGMALN 66
Query: 113 FSGDLDEGVERIKEAI--EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
            +    E +E + +AI  E   V +L+NN GI+         + +    ++++ N+    
Sbjct: 67  VTN--PESIEAVLKAITDEFGGVDILVNNAGITRD--NLLMRMKEEEWSDIMETNLTSIF 122
Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
           ++++AVL GM+K+++G  ++N+G
Sbjct: 123 RLSKAVLRGMMKKRQG-RIINVG 144

>pdb|3TZC|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(Y155f) From Vibrio Cholerae Length = 251

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 75/143 (52%), Gaps = 12/143 (8%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + GIGK+ A  LA+ G  ++    +    + +SD     Y     K + ++
Sbjct: 12  GKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISD-----YLGDNGKGMALN 66
Query: 113 FSGDLDEGVERIKEAI--EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
            +    E +E + +AI  E   V +L+NN GI+         + +    ++++ N+    
Sbjct: 67  VTN--PESIEAVLKAITDEFGGVDILVNNAGITRD--NLLMRMKEEEWSDIMETNLTSIF 122
Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
           ++++AVL GM+K+++G  ++N+G
Sbjct: 123 RLSKAVLRGMMKKRQG-RIINVG 144

>pdb|3TZH|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(F187a) From Vibrio Cholerae Length = 251

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 16/145 (11%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + GIGK+ A  LA+ G  ++    +    + +SD     Y     K + ++
Sbjct: 12  GKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISD-----YLGDNGKGMALN 66
Query: 113 FSGDLDEGVERIKEAIE----GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEG 168
            +    E +E + +AI     G+D  +L+NN GI+         + +    ++++ N+  
Sbjct: 67  VTN--PESIEAVLKAITDEFGGVD--ILVNNAGITRD--NLLMRMKEEEWSDIMETNLTS 120
Query: 169 TTKVTQAVLPGMLKRKKGLSMLNIG 193
             ++++AVL GM+K+++G  ++N+G
Sbjct: 121 IFRLSKAVLRGMMKKRQG-RIINVG 144

>pdb|4G81|D Chain D, Crystal Structure Of A Hexonate Dehydrogenase Ortholog (Target Efi- 506402 From Salmonella Enterica, Unliganded Structure Length = 255

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 4/142 (2%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG   G+G ++A  LA  G  ++L       L +  D++  K        V  D
Sbjct: 9   GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRK--GYDAHGVAFD 66
Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
            + +L       K   EG+ V +LINN GI Y       E++    + +I  N+     V
Sbjct: 67  VTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELEN--WQKVIDTNLTSAFLV 124
Query: 173 TQAVLPGMLKRKKGLSMLNIGK 194
           +++    M+ R  G  ++NIG 
Sbjct: 125 SRSAAKRMIARNSGGKIINIGS 146

>pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa Reductase Length = 303

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKT-QIKSVVV 111
           G  A+VTG   GIGK+   +L + G N+V+  R  ++LK  +D +QA    T Q + + +
Sbjct: 18  GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPI 77
Query: 112 DFSGDLDEGVER-IKEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKN---LIKVNV 166
             +   +E V   +K  ++    +  L+NN G      +F    + +  K    +++ N+
Sbjct: 78  QCNIRNEEEVNNLVKSTLDTFGKINFLVNNGG-----GQFLSPAEHISSKGWHAVLETNL 132
Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNI 192
            GT  + +AV    +K   G S++NI
Sbjct: 133 TGTFYMCKAVYSSWMKEHGG-SIVNI 157

>pdb|4DC0|A Chain A, Crystal Structure Of F189w Actinorhodin Polyketide Ketoreductase With Nadph Length = 281

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG T GIG   A +L K GL + +  R  + L+     ++    +   ++  V    
Sbjct: 29  ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVP 88
Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           +++  V  + E    +D  VL+NN G   P      E+   L  ++++ N+ G  +VT+ 
Sbjct: 89  EIEALVAAVVERYGPVD--VLVNNAG--RPGGGATAELADELWLDVVETNLTGVFRVTKQ 144
Query: 176 VLP--GMLKRKKGLSMLNI 192
           VL   GML+R  G  ++NI
Sbjct: 145 VLKAGGMLERGTG-RIVNI 162

>pdb|1VL8|A Chain A, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441) From Thermotoga Maritima At 2.07 A Resolution Length = 267

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 8/143 (5%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + G+G   A  LA+ G ++V+  RN ++  + +  +  KY   +  +   D
Sbjct: 21  GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG-VETMAFRCD 79
Query: 113 FSG--DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
            S   ++ + +E +KE    LD   ++N  GI+  +      +D+   + +I+VN+ GT 
Sbjct: 80  VSNYEEVKKLLEAVKEKFGKLD--TVVNAAGINRRHPAEEFPLDE--FRQVIEVNLFGTY 135
Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
            V +     +L+     S++NIG
Sbjct: 136 YVCREAFS-LLRESDNPSIINIG 157

>pdb|4DBZ|A Chain A, Crystal Structure Of V151l Actinorhodin Polyketide Ketoreductase With Nadph Length = 281

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG T GIG   A +L K GL + +  R  + L+     ++    +   ++  V    
Sbjct: 29  ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVP 88
Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           +++  V  + E    +D  VL+NN G   P      E+   L  ++++ N+ G  +VT+ 
Sbjct: 89  EIEALVAAVVERYGPVD--VLVNNAG--RPGGGATAELADELWLDVVETNLTGVFRVTKQ 144
Query: 176 VLP--GMLKRKKGLSMLNI 192
           VL   GML+R  G  ++NI
Sbjct: 145 VLKAGGMLERGTG-RIVNI 162

>pdb|1SPX|A Chain A, Crystal Structure Of Glucose Dehydrogenase Of Caenorhabditis Elegans In The Apo-Form Length = 278

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI-QAKYAKTQIKSVVVDFS 114
           A++TG ++GIG++ A   A+ G  + + GR+ ++L++    I  A  ++  + SVV D +
Sbjct: 9   AIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVT 68
Query: 115 GDLDEGVERIKEAIEG----LDVGVLINNVGISYP 145
              D G + I     G    LD  +L+NN G + P
Sbjct: 69  --TDAGQDEILSTTLGKFGKLD--ILVNNAGAAIP 99

>pdb|2JAP|A Chain A, Clavulanic Acid Dehydrogenase: Structural And Biochemical Analysis Of The Final Step In The Biosynthesis Of The Beta- Lactamase Inhibitor Clavulanic Acid Length = 247

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 8/134 (5%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  AL+TG + GIG++ A  LA  G  + +  R  +KL+ + D + A  AK  +  + V 
Sbjct: 7   GKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVA 66
Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARFFHEVDQVLLKNLIKVNVEGTT 170
               +D  V    EA+ GLD  +L+NN GI    P      + D      +I  N+ G  
Sbjct: 67  DRQGVDAAVASTVEALGGLD--ILVNNAGIMLLGP----VEDADTTDWTRMIDTNLLGLM 120
Query: 171 KVTQAVLPGMLKRK 184
            +T+A LP +L+ K
Sbjct: 121 YMTRAALPHLLRSK 134

>pdb|4DC1|A Chain A, Crystal Structure Of Y202f Actinorhodin Polyketide Ketoreductase With Nadph Length = 281

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG T GIG   A +L K GL + +  R  + L+     ++    +   ++  V    
Sbjct: 29  ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVP 88
Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           +++  V  + E    +D  VL+NN G   P      E+   L  ++++ N+ G  +VT+ 
Sbjct: 89  EIEALVAAVVERYGPVD--VLVNNAG--RPGGGATAELADELWLDVVETNLTGVFRVTKQ 144
Query: 176 VLP--GMLKRKKGLSMLNI 192
           VL   GML+R  G  ++NI
Sbjct: 145 VLKAGGMLERGTG-RIVNI 162

>pdb|1W4Z|A Chain A, Structure Of Actinorhodin Polyketide (Actiii) Reductase Length = 281

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG T GIG   A +L K GL + +  R  + L+     ++    +   ++  V    
Sbjct: 29  ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVP 88
Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           +++  V  + E    +D  VL+NN G   P      E+   L  ++++ N+ G  +VT+ 
Sbjct: 89  EIEALVAAVVERYGPVD--VLVNNAG--RPGGGATAELADELWLDVVETNLTGVFRVTKQ 144
Query: 176 VLP--GMLKRKKGLSMLNI 192
           VL   GML+R  G  ++NI
Sbjct: 145 VLKAGGMLERGTG-RIVNI 162

>pdb|2RH4|A Chain A, Actinorhodin Ketoreductase, Actkr, With Nadph And Inhibitor Emodin Length = 277

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG T GIG   A +L K GL + +  R  + L+     ++    +   ++  V    
Sbjct: 25  ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVP 84
Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           +++  V  + E    +D  VL+NN G   P      E+   L  ++++ N+ G  +VT+ 
Sbjct: 85  EIEALVAAVVERYGPVD--VLVNNAG--RPGGGATAELADELWLDVVETNLTGVFRVTKQ 140
Query: 176 VLP--GMLKRKKGLSMLNI 192
           VL   GML+R  G  ++NI
Sbjct: 141 VLKAGGMLERGTG-RIVNI 158

>pdb|1X7G|A Chain A, Actinorhodin Polyketide Ketoreductase, Act Kr, With Nadp Bound Length = 261

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG T GIG   A +L K GL + +  R  + L+     ++    +   ++  V    
Sbjct: 9   ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVP 68
Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           +++  V  + E    +D  VL+NN G   P      E+   L  ++++ N+ G  +VT+ 
Sbjct: 69  EIEALVAAVVERYGPVD--VLVNNAG--RPGGGATAELADELWLDVVETNLTGVFRVTKQ 124
Query: 176 VLP--GMLKRKKGLSMLNI 192
           VL   GML+R  G  ++NI
Sbjct: 125 VLKAGGMLERGTG-RIVNI 142

>pdb|3UF0|A Chain A, Crystal Structure Of A Putative Nad(P) Dependent Gluconate 5- Dehydrogenase From Beutenbergia Cavernae(Efi Target Efi-502044) With Bound Nadp (Low Occupancy) Length = 273

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 10/136 (7%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  A+VTG   GIG++ A   A+ G +++  GR  D +K+V+D I       +  +VV D
Sbjct: 31  GRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADGGGSAE--AVVAD 87
Query: 113 FSGDLDEGVERIKEAIEGL-DVGVLINNVGISYPYARF-FHEVDQVLLKNLIKVNVEGTT 170
            + DL EG   + E +     V VL+NN GI    AR    EV     + ++ VN++   
Sbjct: 88  LA-DL-EGAANVAEELAATRRVDVLVNNAGI---IARAPAEEVSLGRWREVLTVNLDAAW 142
Query: 171 KVTQAVLPGMLKRKKG 186
            ++++    ML    G
Sbjct: 143 VLSRSFGTAMLAHGSG 158

>pdb|3V2H|A Chain A, The Crystal Structure Of D-Beta-Hydroxybutyrate Dehydrogenase From Sinorhizobium Meliloti Length = 281

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 13/153 (8%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVV-VDF 113
           A++TG T GIG + A  LAK G N+VL G   PD+++ V+D +    + T +        
Sbjct: 28  AVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADXTK 87
Query: 114 SGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKN---LIKVNVEGTT 170
             ++ +    + +   G D  +L+NN G+     +F  +++   ++    +I VN+  + 
Sbjct: 88  PSEIADXXAXVADRFGGAD--ILVNNAGV-----QFVEKIEDFPVEQWDRIIAVNLSSSF 140
Query: 171 KVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF 203
              +  +P   K+  G  ++NI  A  + +  F
Sbjct: 141 HTIRGAIPPXKKKGWG-RIINIASAHGLVASPF 172

>pdb|3LZ6|A Chain A, Guinea Pig 11beta Hydroxysteroid Dehydrogenase With Pf-877423 Length = 263

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 74/141 (52%), Gaps = 7/141 (4%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVV 111
           G   +VTG + GIG+  A+ LAK G ++V+  R+ + L K V+  ++   A     +  +
Sbjct: 9   GKKVIVTGASKGIGREIAYHLAKMGAHVVVTARSKEALQKVVARCLELGAASAHYIAGSM 68
Query: 112 DFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFH-EVDQVLLKNLIKVNVEGTT 170
           +     +E V      + GLD+ +++N+V   Y    FFH E+D V  +  ++VN     
Sbjct: 69  EDMTFAEEFVAEAGNLMGGLDM-LILNHV--LYNRLTFFHGEIDNV--RKSMEVNFHSFV 123
Query: 171 KVTQAVLPGMLKRKKGLSMLN 191
            ++ A +P +++ +  +++++
Sbjct: 124 VLSVAAMPMLMQSQGSIAVVS 144

>pdb|4BB6|A Chain A, Free-Wilson And Structural Approaches To Co-Optimising Human And Rodent Isoform Potency For 11b-Hydroxysteroid Dehydrogenase Type 1 11b-Hsd1 Inhibitors Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVV 111
           G   +VTG + GIG+  A+ LAK G ++V+  R+ + L K VS  ++   A     +  +
Sbjct: 34  GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTM 93
Query: 112 DFSGDLDEGVERIKEAIEGLDVGVL--INNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
           +     ++ V +  + + GLD+ +L  I N  ++      FH+ D   ++  ++VN    
Sbjct: 94  EDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLN-----LFHD-DIHHVRKSMEVNFLSY 147
Query: 170 TKVTQAVLPGMLKRKKG 186
             +T A LP MLK+  G
Sbjct: 148 VVLTVAALP-MLKQSNG 163

>pdb|4BB5|A Chain A, Free-Wilson And Structural Approaches To Co-Optimising Human And Rodent Isoform Potency For 11b-Hydroxysteroid Dehydrogenase Type 1 11b-Hsd1 Inhibitors Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVV 111
           G   +VTG + GIG+  A+ LAK G ++V+  R+ + L K VS  ++   A     +  +
Sbjct: 34  GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTM 93
Query: 112 DFSGDLDEGVERIKEAIEGLDVGVL--INNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
           +     ++ V +  + + GLD+ +L  I N  ++      FH+ D   ++  ++VN    
Sbjct: 94  EDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLN-----LFHD-DIHHVRKSMEVNFLSY 147
Query: 170 TKVTQAVLPGMLKRKKG 186
             +T A LP MLK+  G
Sbjct: 148 VVLTVAALP-MLKQSNG 163

>pdb|3G49|A Chain A, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of 11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of Pf-915275 Length = 277

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 74/141 (52%), Gaps = 7/141 (4%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVV 111
           G   +VTG + GIG+  A+ LAK G ++V+  R+ + L K V+  ++   A     +  +
Sbjct: 11  GKKVIVTGASKGIGREIAYHLAKMGAHVVVTARSKEALQKVVARCLELGAASAHYIAGSM 70
Query: 112 DFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFH-EVDQVLLKNLIKVNVEGTT 170
           +     +E V      + GLD+ +++N+V   Y    FFH E+D V  +  ++VN     
Sbjct: 71  EDMTFAEEFVAEAGNLMGGLDM-LILNHV--LYNRLTFFHGEIDNV--RKSMEVNFHSFV 125
Query: 171 KVTQAVLPGMLKRKKGLSMLN 191
            ++ A +P +++ +  +++++
Sbjct: 126 VLSVAAMPMLMQSQGSIAVVS 146

>pdb|1EDO|A Chain A, The X-Ray Structure Of Beta-Keto Acyl Carrier Protein Reductase From Brassica Napus Complexed With Nadp+ Length = 244

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Query: 57  LVTGPTDGIGKSFAFQLAKTGLN-LVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           +VTG + GIGK+ A  L K G   LV   R+    ++VS  I+A   +       + F G
Sbjct: 5   VVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQA------ITFGG 58
Query: 116 DLDEGVE---RIKEAIEGLD-VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           D+ +  +    +K AI+    + V++NN GI+         + +     +I +N+ G   
Sbjct: 59  DVSKEADVEAMMKTAIDAWGTIDVVVNNAGITRDT--LLIRMKKSQWDEVIDLNLTGVFL 116
Query: 172 VTQAVLPGMLKRKKGLSMLNI 192
            TQA    M+K++KG  ++NI
Sbjct: 117 CTQAATKIMMKKRKG-RIINI 136

>pdb|1XSE|A Chain A, Crystal Structure Of Guinea Pig 11beta-Hydroxysteroid Dehydrogenase Type 1 Length = 295

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 74/141 (52%), Gaps = 7/141 (4%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVV 111
           G   +VTG + GIG+  A+ LAK G ++V+  R+ + L K V+  ++   A     +  +
Sbjct: 32  GKKVIVTGASKGIGREIAYHLAKMGAHVVVTARSKEALQKVVARCLELGAASAHYIAGSM 91
Query: 112 DFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFH-EVDQVLLKNLIKVNVEGTT 170
           +     +E V      + GLD+ +++N+V   Y    FFH E+D V  +  ++VN     
Sbjct: 92  EDMTFAEEFVAEAGNLMGGLDM-LILNHV--LYNRLTFFHGEIDNV--RKSMEVNFHSFV 146
Query: 171 KVTQAVLPGMLKRKKGLSMLN 191
            ++ A +P +++ +  +++++
Sbjct: 147 VLSVAAMPMLMQSQGSIAVVS 167

>pdb|3DWF|A Chain A, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid Dehydrogenase Type 1 Mutant F278e Length = 276

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 74/141 (52%), Gaps = 7/141 (4%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVV 111
           G   +VTG + GIG+  A+ LAK G ++V+  R+ + L K V+  ++   A     +  +
Sbjct: 11  GKKVIVTGASKGIGREIAYHLAKMGAHVVVTARSKEALQKVVARCLELGAASAHYIAGSM 70
Query: 112 DFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFH-EVDQVLLKNLIKVNVEGTT 170
           +     +E V      + GLD+ +++N+V   Y    FFH E+D V  +  ++VN     
Sbjct: 71  EDMTFAEEFVAEAGNLMGGLDM-LILNHV--LYNRLTFFHGEIDNV--RKSMEVNFHSFV 125
Query: 171 KVTQAVLPGMLKRKKGLSMLN 191
            ++ A +P +++ +  +++++
Sbjct: 126 VLSVAAMPMLMQSQGSIAVVS 146

>pdb|4IMR|A Chain A, Crystal Structure Of 3-oxoacyl (acyl-carrier-protein) Reductase (target Efi-506442) From Agrobacterium Tumefaciens C58 With Nadp Bound Length = 275

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + GIG + A  LA  G +++L G  P     V   I A     Q      +
Sbjct: 33  GRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQ------E 86
Query: 113 FSGDLDEG------VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNV 166
            +GDL E       +ER  EAI  +D+ V+  +  I+   +          L   + VN+
Sbjct: 87  LAGDLSEAGAGTDLIER-AEAIAPVDILVINASAQINATLSALTPND----LAFQLAVNL 141
Query: 167 EGTTKVTQAVLPGMLKRKKG 186
             T  + Q+ LP M+ RK G
Sbjct: 142 GSTVDMLQSALPKMVARKWG 161

>pdb|2Q2Q|A Chain A, Structure Of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Putida Length = 255

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 23/148 (15%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG T GIG   A  LA+ G N+VL G       D + ++ A+ A+  +K+  V 
Sbjct: 4   GKTALVTGSTSGIGLGIAQVLARAGANIVLNG-----FGDPAPAL-AEIARHGVKA--VH 55
Query: 113 FSGDLDEGVERIKEAIEGL------DVGVLINNVGISY--PYARFFHEVDQVLLKNLIKV 164
              DL + V +I EA+  L       V +L+NN GI +  P  +F  E        +I +
Sbjct: 56  HPADLSD-VAQI-EALFALAEREFGGVDILVNNAGIQHVAPVEQFPLES----WDKIIAL 109
Query: 165 NVEGTTKVTQAVLPGMLKRKKGLSMLNI 192
           N+      T+  LPGM  R  G  ++NI
Sbjct: 110 NLSAVFHGTRLALPGMRARNWG-RIINI 136

>pdb|3TZK|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92a) From Vibrio Cholerae Length = 251

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + GIGK+ A  LA+ G  ++    +    + +SD     Y     K + ++
Sbjct: 12  GKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISD-----YLGDNGKGMALN 66
Query: 113 FSGDLDEGVERIKEAI--EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
            +    E +E + +AI  E   V +L+NN  I+         + +    ++++ N+    
Sbjct: 67  VTN--PESIEAVLKAITDEFGGVDILVNNAAITRD--NLLMRMKEEEWSDIMETNLTSIF 122
Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
           ++++AVL GM+K+++G  ++N+G
Sbjct: 123 RLSKAVLRGMMKKRQG-RIINVG 144

>pdb|2BEL|A Chain A, Structure Of Human 11-Beta-Hydroxysteroid Dehydrogenase In Complex With Nadp And Carbenoxolone Length = 283

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVV 111
           G   +VTG + GIG+  A+ LAK G ++V+  R+ + L K VS  ++   A     +  +
Sbjct: 31  GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTM 90
Query: 112 DFSGDLDEGVERIKEAIEGLDVGVL--INNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
           +     ++ V +  + + GLD+ +L  I N  ++      FH+ D   ++  ++VN    
Sbjct: 91  EDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLN-----LFHD-DIHHVRKSMEVNFLSY 144
Query: 170 TKVTQAVLPGMLKRKKG 186
             +T A LP MLK+  G
Sbjct: 145 VVLTVAALP-MLKQSNG 160

>pdb|2JAH|A Chain A, Biochemical And Structural Analysis Of The Clavulanic Acid Dehydeogenase (Cad) From Streptomyces Clavuligerus Length = 247

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  AL+TG + GIG++ A  LA  G  + +  R  +KL+ + D + A  AK  +  + V 
Sbjct: 7   GKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVA 66
Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARFFHEVDQVLLKNLIKVNVEGTT 170
               +D  V    EA+ GLD  +L+NN GI    P      + D       I  N+ G  
Sbjct: 67  DRQGVDAAVASTVEALGGLD--ILVNNAGIXLLGP----VEDADTTDWTRXIDTNLLGLX 120
Query: 171 KVTQAVLPGMLKRK 184
             T+A LP +L+ K
Sbjct: 121 YXTRAALPHLLRSK 134

>pdb|3IAH|A Chain A, Crystal Structure Of Short Chain Dehydrogenase (ycik) From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 In Complex With Nadp And Acetate. Length = 256

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 12/119 (10%)
Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF--- 113
           LVTG +DGIG+  A   A+ G  ++L+GRN +KL+ V+  I A     Q +   +D    
Sbjct: 19  LVTGASDGIGREAALTYARYGATVILLGRNEEKLRRVAQHI-ADEQHVQPQWFTLDLLTC 77
Query: 114 -SGDLDEGVERIKEAIEGLDVGVLINN--VGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
            + +  +  +RI      LD GVL N   +G   P +    E D  + +++ +VNV  T
Sbjct: 78  TAEECRQVADRIAAHYPRLD-GVLHNAGLLGEIGPXS----EQDPQIWQDVXQVNVNAT 131

>pdb|2IRW|A Chain A, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With Nadp And Adamantane Ether Inhibitor Length = 264

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVV 111
           G   +VTG + GIG+  A+ LAK G ++V+  R+ + L K VS  ++   A     +  +
Sbjct: 9   GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTM 68
Query: 112 DFSGDLDEGVERIKEAIEGLDVGVL--INNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
           +     ++ V +  + + GLD+ +L  I N  ++      FH+ D   ++  ++VN    
Sbjct: 69  EDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLN-----LFHD-DIHHVRKSMEVNFLSY 122
Query: 170 TKVTQAVLPGMLKRKKG 186
             +T A LP MLK+  G
Sbjct: 123 VVLTVAALP-MLKQSNG 138

>pdb|3F1K|A Chain A, Crystal Structure Of Ycik From E. Coli, An Oxidoreductase, Complexed With Nadp+ At 2.6a Resolution Length = 252

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 12/119 (10%)
Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF--- 113
           LVTG +DGIG+  A   A+ G  ++L+GRN +KL+ V+  I  +  + Q +  ++D    
Sbjct: 16  LVTGASDGIGREAAXTYARYGATVILLGRNEEKLRQVASHINEETGR-QPQWFILDLLTC 74
Query: 114 -SGDLDEGVERIKEAIEGLDVGVLINN--VGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
            S +  +  +RI      LD GVL N   +G   P +    E +  + +++ +VNV  T
Sbjct: 75  TSENCQQLAQRIAVNYPRLD-GVLHNAGLLGDVCPXS----EQNPQVWQDVXQVNVNAT 128

>pdb|2RBE|A Chain A, The Discovery Of 2-Anilinothiazolones As 11beta-Hsd1 Inhibitors Length = 275

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVV 111
           G   +VTG + GIG+  A+ LAK G ++V+  R+ + L K VS  ++   A     +  +
Sbjct: 17  GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTM 76
Query: 112 DFSGDLDEGVERIKEAIEGLDVGVL--INNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
           +     ++ V +  + + GLD+ +L  I N  ++      FH+ D   ++  ++VN    
Sbjct: 77  EDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLN-----LFHD-DIHHVRKSMEVNFLSY 130
Query: 170 TKVTQAVLPGMLKRKKG 186
             +T A LP MLK+  G
Sbjct: 131 VVLTVAALP-MLKQSNG 146

>pdb|1XU7|A Chain A, Crystal Structure Of The Interface Open Conformation Of Tetrameric 11b-hsd1 Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVV 111
           G   +VTG + GIG+  A+ LAK G ++V+  R+ + L K VS  ++   A     +  +
Sbjct: 28  GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTM 87
Query: 112 DFSGDLDEGVERIKEAIEGLDVGVL--INNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
           +     ++ V +  + + GLD+ +L  I N  ++      FH+ D   ++  ++VN    
Sbjct: 88  EDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLN-----LFHD-DIHHVRKSMEVNFLSY 141
Query: 170 TKVTQAVLPGMLKRKKG 186
             +T A LP MLK+  G
Sbjct: 142 VVLTVAALP-MLKQSNG 157

>pdb|3D5Q|A Chain A, Crystal Structure Of 11b-Hsd1 In Complex With Triazole Inhibitor Length = 272

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVV 111
           G   +VTG + GIG+  A+ LAK G ++V+  R+ + L K VS  ++   A     +  +
Sbjct: 14  GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTM 73
Query: 112 DFSGDLDEGVERIKEAIEGLDVGVL--INNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
           +     ++ V +  + + GLD+ +L  I N  ++      FH+ D   ++  ++VN    
Sbjct: 74  EDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLN-----LFHD-DIHHVRKSMEVNFLSY 127
Query: 170 TKVTQAVLPGMLKRKKG 186
             +T A LP MLK+  G
Sbjct: 128 VVLTVAALP-MLKQSNG 143

>pdb|3O4R|A Chain A, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR FAMILY) MEMBER 4 (Dhrs4) Length = 261

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVT  TDGIG + A +LA+ G ++V+  R    +     ++Q +          V  + 
Sbjct: 18  ALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAE 77
Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           D +  V    +   G+D  +L++N  ++ P+     +V + +    + +NV+    +T+A
Sbjct: 78  DRERLVATAVKLHGGID--ILVSNAAVN-PFFGSIMDVTEEVWDKTLDINVKAPALMTKA 134
Query: 176 VLPGMLKRKKG 186
           V+P M KR  G
Sbjct: 135 VVPEMEKRGGG 145

>pdb|2ILT|A Chain A, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With Nadp And Adamantane Sulfone Inhibitor Length = 275

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVV 111
           G   +VTG + GIG+  A+ LAK G ++V+  R+ + L K VS  ++   A     +  +
Sbjct: 24  GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTM 83
Query: 112 DFSGDLDEGVERIKEAIEGLDVGVL--INNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
           +     ++ V +  + + GLD+ +L  I N  ++      FH+ D   ++  ++VN    
Sbjct: 84  EDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLN-----LFHD-DIHHVRKSMEVNFLSY 137
Query: 170 TKVTQAVLPGMLKRKKG 186
             +T A LP MLK+  G
Sbjct: 138 VVLTVAALP-MLKQSNG 153

>pdb|3PDJ|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid Dehydrogenase 1 (11b-Hsd1) In Complex With 4,4-Disubstituted Cyclohexylbenzamide Inhibitor Length = 273

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVV 111
           G   +VTG + GIG+  A+ LAK G ++V+  R+ + L K VS  ++   A     +  +
Sbjct: 15  GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTM 74
Query: 112 DFSGDLDEGVERIKEAIEGLDVGVL--INNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
           +     ++ V +  + + GLD+ +L  I N  ++      FH+ D   ++  ++VN    
Sbjct: 75  EDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLN-----LFHD-DIHHVRKSMEVNFLSY 128
Query: 170 TKVTQAVLPGMLKRKKG 186
             +T A LP MLK+  G
Sbjct: 129 VVLTVAALP-MLKQSNG 144

>pdb|3U09|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92d) From Vibrio Cholerae Length = 251

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + GIGK+ A  LA+ G  ++    +    + +SD     Y     K + ++
Sbjct: 12  GKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISD-----YLGDNGKGMALN 66
Query: 113 FSGDLDEGVERIKEAI--EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
            +    E +E + +AI  E   V +L+NN  I+         + +    ++++ N+    
Sbjct: 67  VTN--PESIEAVLKAITDEFGGVDILVNNADITRD--NLLMRMKEEEWSDIMETNLTSIF 122
Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
           ++++AVL GM+K+++G  ++N+G
Sbjct: 123 RLSKAVLRGMMKKRQG-RIINVG 144

>pdb|2B4Q|A Chain A, Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + GIG+  A  L + G  + +  R+ +   D +  + A Y   Q  ++  D
Sbjct: 29  GRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSA-YGDCQ--AIPAD 85
Query: 113 FSGDLDEGVERIKEAIEGLD--VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
            S   + G  R+ +A+  L   + +L+NN G S+  A   + V     + ++++NV    
Sbjct: 86  LSS--EAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSG--WEKVMQLNVTSVF 141
Query: 171 KVTQAVLPGMLKRKKGLS----MLNIGK 194
              Q +LP +L+R         ++NIG 
Sbjct: 142 SCIQQLLP-LLRRSASAENPARVINIGS 168

>pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier Protein) Reductase From Bacillus Anthracis (Ba3989) Length = 246

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 7/136 (5%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKYAKTQIKSVVV 111
           G  ALVTG + GIG++ A  LAK G N+V+    N  K  +V D I+ K     I +V  
Sbjct: 4   GKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIK-KLGSDAI-AVRA 61
Query: 112 DFSGDLDEGVERIKEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
           D + + ++    +K+ ++    V +L+NN G++         + +     +I  N++G  
Sbjct: 62  DVA-NAEDVTNMVKQTVDVFGQVDILVNNAGVTKD--NLLMRMKEEEWDTVINTNLKGVF 118
Query: 171 KVTQAVLPGMLKRKKG 186
             T+AV   M++++ G
Sbjct: 119 LCTKAVSRFMMRQRHG 134

>pdb|2WDZ|A Chain A, Crystal Structure Of The Short Chain Dehydrogenase Galactitol-Dehydrogenase (Gatdh) Of Rhodobacter Sphaeroides In Complex With Nad+ And 1,2-Pentandiol Length = 254

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 8/146 (5%)
Query: 49  LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKS 108
            R  G+ A VTG   GIG       A +G  L+L+ R    L   +  + A  A      
Sbjct: 7   FRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVA----AR 62
Query: 109 VVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEG 168
           +V D + D +       EA     V +L+N+ GI+  +     E D    + ++ VNV+G
Sbjct: 63  IVADVT-DAEAMTAAAAEAEAVAPVSILVNSAGIARLHDAL--ETDDATWRQVMAVNVDG 119
Query: 169 TTKVTQAVLPGMLKRKKGLSMLNIGK 194
               ++A    M+ R  G +++N+G 
Sbjct: 120 MFWASRAFGRAMVARGAG-AIVNLGS 144

>pdb|3CH6|A Chain A, Crystal Structure Of 11beta-Hsd1 Double Mutant (L262r, F278e) Complexed With (3,3-Dimethylpiperidin-1-Yl)(6-(3- Fluoro-4-Methylphenyl)pyridin-2-Yl)methanone Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVV 111
           G   +VTG + GIG+  A+ LAK G ++V+  R+ + L K VS  ++   A     +  +
Sbjct: 28  GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTM 87
Query: 112 DFSGDLDEGVERIKEAIEGLDVGVL--INNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
           +     ++ V +  + + GLD+ +L  I N  ++      FH+ D   ++  ++VN    
Sbjct: 88  EDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLN-----LFHD-DIHHVRKSMEVNFLSY 141
Query: 170 TKVTQAVLPGMLKRKKG 186
             +T A LP MLK+  G
Sbjct: 142 VVLTVAALP-MLKQSNG 157

>pdb|4HFR|A Chain A, Human 11beta-Hydroxysteroid Dehydrogenase Type 1 In Complex With An Orally Bioavailable Acidic Inhibitor Azd4017. Length = 272

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVV 111
           G   +VTG + GIG+  A+ LAK G ++V+  R+ + L K VS  ++   A     +  +
Sbjct: 14  GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTM 73
Query: 112 DFSGDLDEGVERIKEAIEGLDVGVL--INNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
           +     ++ V +  + + GLD+ +L  I N  ++      FH+ D   ++  ++VN    
Sbjct: 74  EDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLN-----LFHD-DIHHVRKSMEVNFLSY 127
Query: 170 TKVTQAVLPGMLKRKKG 186
             +T A LP MLK+  G
Sbjct: 128 VVLTVAALP-MLKQSNG 143

>pdb|1Q7C|A Chain A, The Structure Of Betaketoacyl-[acp] Reductase Y151f Mutant In Complex With Nadph Fragment Length = 244

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 73/143 (51%), Gaps = 25/143 (17%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + GIG++ A  LA  G  ++    + +  + +SD     Y     K ++++
Sbjct: 5   GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISD-----YLGANGKGLMLN 59
Query: 113 FS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIK 163
            +    ++  +E+I+   E  +V +L+NN GI+          D +L++       ++I+
Sbjct: 60  VTDPASIESVLEKIRA--EFGEVDILVNNAGITR---------DNLLMRMKDEEWNDIIE 108
Query: 164 VNVEGTTKVTQAVLPGMLKRKKG 186
            N+    ++++AV+  M+K++ G
Sbjct: 109 TNLSSVFRLSKAVMRAMMKKRHG 131

>pdb|2CF2|E Chain E, Architecture Of Mammalian Fatty Acid Synthase Length = 226

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 73/143 (51%), Gaps = 25/143 (17%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + GIG++ A  LA  G  ++    + +  + +SD     Y     K ++++
Sbjct: 5   GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISD-----YLGANGKGLMLN 59
Query: 113 FS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIK 163
            +    ++  +E+I+   E  +V +L+NN GI+          D +L++       ++I+
Sbjct: 60  VTDPASIESVLEKIRA--EFGEVDILVNNAGITR---------DNLLMRMKDEEWNDIIE 108
Query: 164 VNVEGTTKVTQAVLPGMLKRKKG 186
            N+    ++++AV+  M+K++ G
Sbjct: 109 TNLSSVFRLSKAVMRAMMKKRHG 131

>pdb|1I01|A Chain A, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein] Reductase From E. Coli. Length = 244

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 73/143 (51%), Gaps = 25/143 (17%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + GIG++ A  LA  G  ++    + +  + +SD     Y     K ++++
Sbjct: 5   GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISD-----YLGANGKGLMLN 59
Query: 113 FS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIK 163
            +    ++  +E+I+   E  +V +L+NN GI+          D +L++       ++I+
Sbjct: 60  VTDPASIESVLEKIRA--EFGEVDILVNNAGITR---------DNLLMRMKDEEWNDIIE 108
Query: 164 VNVEGTTKVTQAVLPGMLKRKKG 186
            N+    ++++AV+  M+K++ G
Sbjct: 109 TNLSSVFRLSKAVMRAMMKKRHG 131

>pdb|2Z1N|A Chain A, Crystal Structure Of Ape0912 From Aeropyrum Pernix K1 Length = 260

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  A+VT  + G+G + A +LA+ G  L+L  RN +KL+  +  I +  +  Q+  V  D
Sbjct: 7   GKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGD 66
Query: 113 F--SGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFH 151
               GD+D   E+ ++ + G D  +L+ + G   P  RF  
Sbjct: 67  IREPGDIDRLFEKARD-LGGAD--ILVYSTGGPRP-GRFME 103

>pdb|3E9Q|A Chain A, Crystal Structure Of The Short Chain Dehydrogenase From Shigella Flexneri Length = 273

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           LVTG +DGIG+  A   A+ G  ++L+GRN +KL+ V+  I  +  + Q +  ++D    
Sbjct: 37  LVTGASDGIGREAAXTYARYGATVILLGRNEEKLRQVASHINEETGR-QPQWFILDLLTC 95
Query: 117 LDEGVERIKEAI 128
             E  +++ + I
Sbjct: 96  TSENCQQLAQRI 107

>pdb|3L77|A Chain A, X-Ray Structure Alcohol Dehydrogenase From Archaeon Thermococcus Sibiricus Complexed With 5-Hydroxy-Nadp Length = 235

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 16/142 (11%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A++TG + GIG++ A  LA+ G  L L  R+ D+L+ ++  +       Q + V V F  
Sbjct: 5   AVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELM------QEQGVEV-FYH 57
Query: 116 DLD----EGVERI-KEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
            LD    E VE   K+ +E   DV V++ N G+ Y + R      +     +I+VN+ G 
Sbjct: 58  HLDVSKAESVEEFSKKVLERFGDVDVVVANAGLGY-FKRLEELS-EEEFHEMIEVNLLGV 115
Query: 170 TKVTQAVLPGMLKRKKGLSMLN 191
            +  +A L   LKR  GL+++ 
Sbjct: 116 WRTLKAFLDS-LKRTGGLALVT 136

>pdb|3TN7|A Chain A, Crystal Structure Of Short-Chain Alcohol Dehydrogenase From Hyperthermophilic Archaeon Thermococcus Sibiricus Complexed With 5- Hydroxy-Nadp Length = 257

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 16/142 (11%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A++TG + GIG++ A  LA+ G  L L  R+ D+L+ ++  +       Q + V V F  
Sbjct: 27  AVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELM------QEQGVEV-FYH 79
Query: 116 DLD----EGVERI-KEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
            LD    E VE   K+ +E   DV V++ N G+ Y + R      +     +I+VN+ G 
Sbjct: 80  HLDVSKAESVEEFSKKVLERFGDVDVVVANAGLGY-FKRLEELS-EEEFHEMIEVNLLGV 137
Query: 170 TKVTQAVLPGMLKRKKGLSMLN 191
            +  +A L   LKR  GL+++ 
Sbjct: 138 WRTLKAFLDS-LKRTGGLALVT 158

>pdb|3QIV|A Chain A, Crystal Structure Of A Putative Short-Chain Dehydrogenase Or 3- Oxoacyl-[acyl-Carrier-Protein] Reductase From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            +VTG   GIG+++A  LA+ G  +V+   N +  + V+  I A    T I SV VD S 
Sbjct: 12  GIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD-GGTAI-SVAVDVS- 68
Query: 116 DLDEG---VERIKEAIEGLDVGVLINNVGI-SYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           D +      +R      G+D   L+NN  I       F   +D    K  + VN++G   
Sbjct: 69  DPESAKAMADRTLAEFGGID--YLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALW 126
Query: 172 VTQAVLPGMLKRKKG 186
            T+AV   M KR  G
Sbjct: 127 CTRAVYKKMTKRGGG 141

>pdb|1Y5M|A Chain A, The Crystal Structure Of Murine 11b-Hydroxysteroid Dehydrogenase: An Important Therapeutic Target For Diabetes Length = 276

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 71/135 (52%), Gaps = 6/135 (4%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVV 111
           G   +VTG + GIG+  A+ L+K G ++VL  R+ + L K VS  ++   A     +  +
Sbjct: 18  GKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTM 77
Query: 112 DFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           +     ++ + +  + + GLD+ +++N+  I+      FH+ D   ++ +++VN      
Sbjct: 78  EDMTFAEQFIVKAGKLMGGLDM-LILNH--ITQTSLSLFHD-DIHSVRRVMEVNFLSYVV 133
Query: 172 VTQAVLPGMLKRKKG 186
           ++ A LP MLK+  G
Sbjct: 134 MSTAALP-MLKQSNG 147

>pdb|3GMD|A Chain A, Structure-Based Design Of 7-Azaindole-Pyrrolidines As Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I Length = 264

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 71/135 (52%), Gaps = 6/135 (4%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVV 111
           G   +VTG + GIG+  A+ L+K G ++VL  R+ + L K VS  ++   A     +  +
Sbjct: 9   GKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTM 68
Query: 112 DFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           +     ++ + +  + + GLD+ +++N+  I+      FH+ D   ++ +++VN      
Sbjct: 69  EDMTFAEQFIVKAGKLMGGLDM-LILNH--ITQTSLSLFHD-DIHSVRRVMEVNFLSYVV 124
Query: 172 VTQAVLPGMLKRKKG 186
           ++ A LP MLK+  G
Sbjct: 125 MSTAALP-MLKQSNG 138

>pdb|2HQ1|A Chain A, Crystal Structure Of Orf 1438 A Putative GlucoseRIBITOL Dehydrogenase From Clostridium Thermocellum Length = 247

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 27/146 (18%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSV-VV 111
           G  A+VTG + G+GK+ A++L   G N+VL G         S S+ A   + +   + VV
Sbjct: 5   GKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGS------PASTSLDATAEEFKAAGINVV 58
Query: 112 DFSGDLD--EGVER-IKEAIEGLD-VGVLINNVGISYPYARFFHEVDQVLLK-------N 160
              GD+   E VE  +K A++    + +L+NN GI+          D ++LK       +
Sbjct: 59  VAKGDVKNPEDVENMVKTAMDAFGRIDILVNNAGITR---------DTLMLKMSEKDWDD 109
Query: 161 LIKVNVEGTTKVTQAVLPGMLKRKKG 186
           ++  N++     T+AV   MLK+K G
Sbjct: 110 VLNTNLKSAYLCTKAVSKIMLKQKSG 135

>pdb|3NUG|A Chain A, Crystal Structure Of Wild Type Tetrameric Pyridoxal 4-Dehydrogenase From Mesorhizobium Loti Length = 247

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 11/145 (7%)
Query: 50  RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSV 109
           R  G  ALVTG   GIGK+ A +LA  G  +++   N +  K  + SI  K      +++
Sbjct: 3   RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKA-----RAI 57
Query: 110 VVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVE 167
             D S  G +      I+    G+D  +L+NN  I  P+   + +VD    + +I VN+ 
Sbjct: 58  AADISDPGSVKALFAEIQALTGGID--ILVNNASI-VPFVA-WDDVDLDHWRKIIDVNLT 113
Query: 168 GTTKVTQAVLPGMLKRKKGLSMLNI 192
           GT  VT+A    M    K   +++I
Sbjct: 114 GTFIVTRAGTDQMRAAGKAGRVISI 138

>pdb|2QQ5|A Chain A, Crystal Structure Of Human Sdr Family Member 1 Length = 260

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G   +VTG + GIG+  A QL K G  + + GR+ D L+ V+   +A+    Q   VV D
Sbjct: 5   GQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQ--EAQSLGGQCVPVVCD 62
Query: 113 FSGDLD-----EGVERIKEAIEGLDVGVLINN 139
            S + +     E V+R ++      + VL+NN
Sbjct: 63  SSQESEVRSLFEQVDREQQG----RLDVLVNN 90

>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional Enzyme Type 2 From Drosophila Melanogaster Length = 613

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 22/150 (14%)
Query: 49  LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIK- 107
           LR  G  A+VTG   G+G+ +A   A+ G  +V+         D +    A     +I+ 
Sbjct: 15  LRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRK 74
Query: 108 ---SVVVDFSGDLDEGVERIKEAIEGLD-VGVLINNVGISYPYARFFHEVDQVLLK---- 159
                V D++  +D G + I+ AI+    V +L+NN GI           D+ L+K    
Sbjct: 75  AGGEAVADYNSVID-GAKVIETAIKAFGRVDILVNNAGILR---------DRSLVKTSEQ 124
Query: 160 --NLIK-VNVEGTTKVTQAVLPGMLKRKKG 186
             NL+  V+++G+ K TQA  P M K+  G
Sbjct: 125 DWNLVNDVHLKGSFKCTQAAFPYMKKQNYG 154

>pdb|3CSD|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To Nadph And The Inhibitor Emodin Length = 281

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG T GIG   A +L K GL + +  R  + L+     ++    +   ++  V    
Sbjct: 29  ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVP 88
Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           +++  V  + E    +D  VL+NN G     A    E+   L  ++++ N+ G  +VT+ 
Sbjct: 89  EIEALVAAVVERYGPVD--VLVNNAGRLGGGA--TAELADELWLDVVETNLTGVFRVTKQ 144
Query: 176 VLP--GMLKRKKGLSMLNI 192
           VL   GML+R  G  ++NI
Sbjct: 145 VLKAGGMLERGTG-RIVNI 162

>pdb|2RHR|B Chain B, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And Inhibitor Emodin Length = 277

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG T GIG   A +L K GL + +  R  + L+     ++    +   ++  V    
Sbjct: 25  ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVP 84
Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           +++  V  + E    +D  VL+NN G     A    E+   L  ++++ N+ G  +VT+ 
Sbjct: 85  EIEALVAAVVERYGPVD--VLVNNAGRLGGGA--TAELADELWLDVVETNLTGVFRVTKQ 140
Query: 176 VLP--GMLKRKKGLSMLNI 192
           VL   GML+R  G  ++NI
Sbjct: 141 VLKAGGMLERGTG-RIVNI 158

>pdb|3KVO|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Hydroxysteroid Dehydrogenase Like 2 (Hsdl2) Length = 346

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 26/157 (16%)
Query: 50  RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR----NPDKLKDV---SDSIQAKYA 102
           R  G    +TG + GIGK+ A + AK G N+V+  +    +P  L  +   ++ I+A   
Sbjct: 42  RLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGG 101
Query: 103 KTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVG-------ISYPYARFFHEVDQ 155
           K     V V     +   VE+  +   G+D  +L+NN         +  P  R       
Sbjct: 102 KALPCIVDVRDEQQISAAVEKAIKKFGGID--ILVNNASAISLTNTLDTPTKR------- 152
Query: 156 VLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNI 192
             L  ++ VN  GT   ++A +P  LK+ K   +LNI
Sbjct: 153 --LDLMMNVNTRGTYLASKACIP-YLKKSKVAHILNI 186

>pdb|3CXR|A Chain A, Crystal Structure Of Gluconate 5-Dehydrogase From Streptococcus Suis Type 2 Length = 291

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKS--VV 110
           G  ALVTG + GIG + A   AK G  +V    N    +++ D   A Y    I +   V
Sbjct: 34  GKIALVTGASYGIGFAIASAYAKAGATIVFNDIN----QELVDRGMAAYKAAGINAHGYV 89
Query: 111 VDFSGDLDEGVERIKEAIEGLDVG---VLINNVGISYPYARFFHEVDQVLLKNLIKVNVE 167
            D +   ++G++ +   IE  +VG   +L+NN GI         E+     + +I +++ 
Sbjct: 90  CDVTD--EDGIQAMVAQIES-EVGIIDILVNNAGIIRRVPMI--EMTAAQFRQVIDIDLN 144
Query: 168 GTTKVTQAVLPGMLKRKKGLSMLNI 192
               V++AV+P M+K+  G  ++NI
Sbjct: 145 APFIVSKAVIPSMIKKGHG-KIINI 168

>pdb|1O5I|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Reductase (Tm1169) From Thermotoga Maritima At 2.50 A Resolution Length = 249

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 21/130 (16%)
Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
           LV   + GIG++ A  L++ G  + +  RN + LK           ++  + VV D   D
Sbjct: 23  LVLAASRGIGRAVADVLSQEGAEVTICARNEELLK-----------RSGHRYVVCDLRKD 71
Query: 117 LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAV 176
           LD   E++KE      V +L+ N G   P A FF E+     K  I        K+ +  
Sbjct: 72  LDLLFEKVKE------VDILVLNAG--GPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNY 123
Query: 177 LPGMLKRKKG 186
           LP M  ++KG
Sbjct: 124 LPAM--KEKG 131

>pdb|2CFC|A Chain A, Structural Basis For Stereo Selectivity In The (R)- And (S)- Hydroxypropylethane Thiosulfonate Dehydrogenases Length = 250

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKT--QIKSVVVDF 113
           A+VTG + G G + A +    G  +  +  + + L++ + +    YA    ++++ V D 
Sbjct: 5   AIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVAD- 63
Query: 114 SGDLDEGVERIKEAIEGLDVGVLINNVGIS-YPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
            GD++  +    E    +DV  L+NN GI+    A   H         ++ VNV G    
Sbjct: 64  EGDVNAAIAATMEQFGAIDV--LVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLG 121
Query: 173 TQAVLPGMLKRKKGLSMLNIGK 194
            +AVLP ML +  G+ ++NI  
Sbjct: 122 CRAVLPHMLLQGAGV-IVNIAS 142

>pdb|1AHI|A Chain A, 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With Nadh And 7-Oxo Glycochenodeoxycholic Acid Length = 255

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 15/147 (10%)
Query: 46  AKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI-----QAK 100
           + NLR  G  A++TG   GIGK  A   A  G ++V+   N D    V D I     QA 
Sbjct: 4   SDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAF 63
Query: 101 YAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKN 160
             +  I S   + S   D  + ++ +      V +L+NN G   P        D    + 
Sbjct: 64  ACRCDITS-EQELSALADFAISKLGK------VDILVNNAGGGGPKPFDMPMAD---FRR 113
Query: 161 LIKVNVEGTTKVTQAVLPGMLKRKKGL 187
             ++NV     ++Q V P M K   G+
Sbjct: 114 AYELNVFSFFHLSQLVAPEMEKNGGGV 140

>pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum Length = 285

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG   GIG+  A  LAK+  +++ + R       V D I++   ++        ++G
Sbjct: 47  ALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESS------GYAG 100
Query: 116 DLDEGVERIKEAI-----EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
           D+ +  E I E I     E  +V +L+NN GI+      F  +     +++++ N+    
Sbjct: 101 DVSKK-EEISEVINKILTEHKNVDILVNNAGITRD--NLFLRMKNDEWEDVLRTNLNSLF 157
Query: 171 KVTQAVLPGMLKRKKG 186
            +TQ +   M+  + G
Sbjct: 158 YITQPISKRMINNRYG 173

>pdb|3NDR|A Chain A, Crystal Structure Of Tetrameric Pyridoxal 4-Dehydrogenase From Mesorhizobium Loti Length = 247

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 50  RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSV 109
           R  G  ALVTG   GIGK+ A +LA  G  +++   N +  K  + SI  K      +++
Sbjct: 3   RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKA-----RAI 57
Query: 110 VVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVE 167
             D S  G +      I+    G+D  +L+NN  I  P+   + +VD    + +I VN+ 
Sbjct: 58  AADISDPGSVKALFAEIQALTGGID--ILVNNASI-VPFVA-WDDVDLDHWRKIIDVNLT 113
Query: 168 GTTKVTQA 175
           GT  VT+A
Sbjct: 114 GTFIVTRA 121

>pdb|3OEC|A Chain A, Crystal Structure Of Carveol Dehydrogenase From Mycobacterium Thermoresistibile Length = 317

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 18/158 (11%)
Query: 46  AKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG------------RNPDKLKDV 93
           A+  R  G  A +TG   G G++ A +LA+ G ++V +              +P++LK+ 
Sbjct: 39  ARMNRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKET 98
Query: 94  SDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI-EGLDVGVLINNVGISYPYARFFHE 152
              ++ +  +   +   V    DL      + EA+ E   + +L++NVGIS         
Sbjct: 99  VRLVEEQGRRIIARQADVR---DLASLQAVVDEALAEFGHIDILVSNVGISN-QGEVVSL 154
Query: 153 VDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSML 190
            DQ    ++++ N+ G     +AVLP M++R +G S++
Sbjct: 155 TDQ-QWSDILQTNLIGAWHACRAVLPSMIERGQGGSVI 191

>pdb|3PK0|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE SDR FROM Mycobacterium Smegmatis Length = 262

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 57/150 (38%), Gaps = 9/150 (6%)
Query: 45  PAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKD-VSDSIQAKYAK 103
           P       G   +VTG T GIG+  A   A+ G N+ + GR+   +   V+D  Q    K
Sbjct: 2   PGSMFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGK 61
Query: 104 TQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGI--SYPYARFFHEVDQVLLKNL 161
                  V      D    R  E   G+D  V+  N G+    P A    E     L  +
Sbjct: 62  VIGVQTDVSDRAQCDALAGRAVEEFGGID--VVCANAGVFPDAPLATMTPE----QLNGI 115
Query: 162 IKVNVEGTTKVTQAVLPGMLKRKKGLSMLN 191
             VNV GT    QA L  ++    G  +L 
Sbjct: 116 FAVNVNGTFYAVQACLDALIASGSGRVVLT 145

>pdb|4AFN|A Chain A, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein) Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a Resolution Length = 269

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 78/151 (51%), Gaps = 11/151 (7%)
Query: 47  KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQI 106
           +++   G  ALVTG + GIG++ A +L + G  ++    +    + ++++++A     + 
Sbjct: 21  QSMSLQGKVALVTGASRGIGQAIALELGRLGAVVIGTATSASGAEKIAETLKAN--GVEG 78
Query: 107 KSVVVDFSGDLDEGVERIKEAIEGLDVG---VLINNVGISYPYARFFHEVDQVLLKNLIK 163
             +V+D S   DE V    E I+   +G   +++NN GI+        + D+    +++ 
Sbjct: 79  AGLVLDVSS--DESVAATLEHIQ-QHLGQPLIVVNNAGITRDNLLVRMKDDEWF--DVVN 133
Query: 164 VNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK 194
            N+    ++++AVL GM K + G  ++NIG 
Sbjct: 134 TNLNSLYRLSKAVLRGMTKARWG-RIINIGS 163

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	1e-26
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	3e-26
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	2e-25
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	3e-25
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	5e-25
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	1e-24
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	2e-24
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	1e-23
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	1e-23
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	1e-23
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	2e-23
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	4e-23
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	4e-23
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	1e-22
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	2e-22
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	7e-22
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	8e-22
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	2e-21
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	3e-21
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	4e-21
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	5e-21
1xkq_A	280	Short-chain reductase family member (5D234); parra	6e-21
3cxt_A	291	Dehydrogenase with different specificities; rossma	6e-21
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	6e-21
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	6e-21
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	6e-21
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	8e-21
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	1e-20
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	1e-20
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	2e-20
1xhl_A	297	Short-chain dehydrogenase/reductase family member	2e-20
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	2e-20
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	2e-20
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	2e-20
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	3e-20
1xq1_A	266	Putative tropinone reducatse; structural genomics,	4e-20
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	5e-20
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	6e-20
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	6e-20
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	7e-20
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	7e-20
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	1e-19
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	2e-19
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	3e-19
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	3e-19
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	3e-19
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	3e-19
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	4e-19
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	5e-19
3imf_A	257	Short chain dehydrogenase; structural genomics, in	6e-19
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	6e-19
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	6e-19
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	9e-19
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	1e-18
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	1e-18
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	1e-18
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	2e-18
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	2e-18
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	2e-18
1spx_A	278	Short-chain reductase family member (5L265); paral	3e-18
3rih_A	293	Short chain dehydrogenase or reductase; structural	3e-18
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	3e-18
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	4e-18
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	4e-18
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	4e-18
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	4e-18
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	4e-18
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	5e-18
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	6e-18
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	6e-18
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	7e-18
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	8e-18
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	1e-17
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	1e-17
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	1e-17
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	1e-17
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	2e-17
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	2e-17
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	2e-17
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	2e-17
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	2e-17
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	2e-17
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	3e-17
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	5e-17
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	5e-17
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	6e-17
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	6e-17
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	7e-17
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	7e-17
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	9e-17
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	1e-16
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	1e-16
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	2e-16
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	2e-16
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	3e-16
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	3e-16
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	3e-16
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	4e-16
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	6e-16
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	7e-16
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	8e-16
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	8e-16
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	9e-16
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	1e-15
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	1e-15
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	2e-15
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	2e-15
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	2e-15
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	2e-15
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	2e-15
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	3e-15
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	5e-15
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	6e-15
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	6e-15
4dqx_A	277	Probable oxidoreductase protein; structural genomi	7e-15
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	8e-15
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	8e-15
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	1e-14
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	1e-14
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	1e-14
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	1e-14
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	1e-14
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	1e-14
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	2e-14
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	2e-14
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	2e-14
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	4e-14
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	5e-14
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	6e-14
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	7e-14
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	7e-14
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	8e-14
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	8e-14
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	1e-13
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	2e-13
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	2e-13
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	3e-13
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	3e-13
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	4e-13
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	4e-13
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	4e-13
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	6e-13
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	6e-13
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	6e-13
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	1e-12
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	2e-12
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	3e-12
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	3e-12
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	4e-12
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	5e-12
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	5e-12
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	5e-12
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	6e-12
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	7e-12
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	7e-12
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	9e-12
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	1e-11
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	2e-11
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	3e-11
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	3e-11
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	3e-11
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	4e-11
4e4y_A	244	Short chain dehydrogenase family protein; structur	4e-11
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	5e-11
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	5e-11
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	6e-11
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	9e-11
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	1e-10
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	1e-10
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	2e-10
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	2e-10
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	3e-10
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	4e-10
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	5e-10
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	1e-09
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	1e-09
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	2e-09
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	5e-09
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	3e-09
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	4e-09
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	6e-09
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	7e-09
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	1e-08
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	2e-08
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	5e-08
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	3e-07
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	6e-07
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} Length = 230

 Score =  100 bits (252), Expect = 1e-26
 Identities = 23/140 (16%), Positives = 52/140 (37%), Gaps = 16/140 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            ++TG + G+G   A      G    L GR+  KL  V++ +              D + 
Sbjct: 4   IVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNV-----GYRARDLAS 58

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             ++++  E++           ++++ G    Y     E D   ++ LI+ N+     V 
Sbjct: 59  HQEVEQLFEQLDSIPS-----TVVHSAGSG--YFGLLQEQDPEQIQTLIENNLSSAINVL 111

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           + ++     +   +  + I 
Sbjct: 112 RELVKRYKDQPVNV--VMIM 129

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Length = 272

 Score =  100 bits (252), Expect = 3e-26
 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 10/153 (6%)

Query: 43  LRPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYA 102
           L P  +     S   +TG T G G++ A + A+ G +LVL GR  ++L+ ++  +    A
Sbjct: 13  LVPRGSHM--SSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELS---A 67

Query: 103 KTQIKSVVVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKN 160
           KT++  + +D      +   V+ + E    L    LINN G++          D      
Sbjct: 68  KTRVLPLTLDVRDRAAMSAAVDNLPEEFATLR--GLINNAGLALGTDP-AQSCDLDDWDT 124

Query: 161 LIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           ++  N++G    T+ +LP ++    G S++N+G
Sbjct: 125 MVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLG 157

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Length = 259

 Score = 98.2 bits (245), Expect = 2e-25
 Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 9/147 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKT---GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
            ++TG + G G++ A QLA+    G  +++  R+   L+ + + + A+    ++     D
Sbjct: 9   CVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAAD 68

Query: 113 FS--GDLDEGVERIKEA--IEGLDVGVLINNVGISYPYAR-FFHEVDQVLLKNLIKVNVE 167
                 +   +  ++E    EGL   +LINN       ++ F +  D   + N   +N+ 
Sbjct: 69  LGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLT 128

Query: 168 GTTKVTQAVLPGMLKRK-KGLSMLNIG 193
               +T   L           +++NI 
Sbjct: 129 SMLCLTSGTLNAFQDSPGLSKTVVNIS 155

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Length = 287

 Score = 98.1 bits (245), Expect = 3e-25
 Identities = 33/146 (22%), Positives = 70/146 (47%), Gaps = 9/146 (6%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGL---NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSV 109
               L+TG + GIGK+ A +  +       L+L  R  +KL+++  +I  ++   ++   
Sbjct: 33  KKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVA 92

Query: 110 VVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVE 167
            +D +    +   +E + +  + +D+  L+NN G +    R   ++    ++++   NV 
Sbjct: 93  QLDITQAEKIKPFIENLPQEFKDIDI--LVNNAGKALGSDRV-GQIATEDIQDVFDTNVT 149

Query: 168 GTTKVTQAVLPGMLKRKKGLSMLNIG 193
               +TQAVLP    +  G  ++N+G
Sbjct: 150 ALINITQAVLPIFQAKNSG-DIVNLG 174

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} Length = 260

 Score = 97.2 bits (243), Expect = 5e-25
 Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 6/141 (4%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  A+VT  + G+G + A +LA+ G  L+L  RN +KL+  +  I +  +  Q+  V  D
Sbjct: 7   GKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGD 66

Query: 113 FSGDLDEGVERIKEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
                   ++R+ E    L    +L+ + G   P    F E+         ++       
Sbjct: 67  IRE--PGDIDRLFEKARDLGGADILVYSTGG--PRPGRFMELGVEDWDESYRLLARSAVW 122

Query: 172 VTQAVLPGMLKRKKGLSMLNI 192
           V +     M+++  G  M+ I
Sbjct: 123 VGRRAAEQMVEKGWG-RMVYI 142

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} Length = 267

 Score = 96.1 bits (240), Expect = 1e-24
 Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 6/131 (4%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG T GIGK+ A  L   G N+++ GR  + + +    I+A+Y    ++ VV D   
Sbjct: 13  ALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGT 72

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
             ++G + + E    +D  +LINN+GI       + ++       L +VN+    ++T++
Sbjct: 73  --EQGCQDVIEKYPKVD--ILINNLGI--FEPVEYFDIPDEDWFKLFEVNIMSGVRLTRS 126

Query: 176 VLPGMLKRKKG 186
            L  M++RK+G
Sbjct: 127 YLKKMIERKEG 137

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250

 Score = 95.7 bits (239), Expect = 2e-24
 Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 13/143 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAK-TQIKSVVVDFS 114
           A++TG + GIG   A  LA  G  +VL+ R+   L+ V D I        +   + +D +
Sbjct: 10  AIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDIT 69

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARFFHEVDQVLLKNLIKVNVEGTT 170
                D  ++ I +    +D  +L+N   +      +       ++     +++NV    
Sbjct: 70  DCTKADTEIKDIHQKYGAVD--ILVNAAAMFMDGSLSEPVDNFRKI-----MEINVIAQY 122

Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
            + + V   M  +K G  + N+ 
Sbjct: 123 GILKTVTEIMKVQKNG-YIFNVA 144

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} Length = 235

 Score = 93.4 bits (233), Expect = 1e-23
 Identities = 31/140 (22%), Positives = 68/140 (48%), Gaps = 8/140 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A++TG + GIG++ A  LA+ G  L L  R+ D+L+ ++  +  +    ++    +D S 
Sbjct: 5   AVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQG-VEVFYHHLDVSK 63

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              ++E  +++ E    +D  V++ N G+ Y   +   E+ +     +I+VN+ G  +  
Sbjct: 64  AESVEEFSKKVLERFGDVD--VVVANAGLGYF--KRLEELSEEEFHEMIEVNLLGVWRTL 119

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           +A L  + +      ++   
Sbjct: 120 KAFLDSLKRTGGLA-LVTTS 138

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* Length = 248

 Score = 93.4 bits (233), Expect = 1e-23
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 11/140 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            LVTG T G G+    +  + G  ++  GR  ++L+++ D +        +    +D   
Sbjct: 3   VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDN-----LYIAQLDVRN 57

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              ++E +  +      +D  +L+NN G++       H+      + +I  N +G   +T
Sbjct: 58  RAAIEEMLASLPAEWCNID--ILVNNAGLALGMEP-AHKASVEDWETMIDTNNKGLVYMT 114

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           +AVLPGM++R  G  ++NIG
Sbjct: 115 RAVLPGMVERNHG-HIINIG 133

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Length = 279

 Score = 93.9 bits (234), Expect = 1e-23
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG + GIG + A  L + GL +V   R    +++++   ++      +     D S 
Sbjct: 35  ALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN 94

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             D+      I+    G+D  + INN G++ P             K++  VNV   +  T
Sbjct: 95  EEDILSMFSAIRSQHSGVD--ICINNAGLARP--DTLLSGSTSGWKDMFNVNVLALSICT 150

Query: 174 QAVLPGMLKRKKG 186
           +     M +R   
Sbjct: 151 REAYQSMKERNVD 163

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252

 Score = 92.7 bits (231), Expect = 2e-23
 Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 12/141 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
             V G  D IG   A + A  G  +    RN +KL  +   I+A  A  +I +  +D   
Sbjct: 10  VAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEA--AGGRIVARSLDAR- 66

Query: 116 DLDEGVERIKEAIE---GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
           + DE V     A +    L+  V I NVG +        E    + + + ++        
Sbjct: 67  NEDE-VTAFLNAADAHAPLE--VTIFNVGANVN--FPILETTDRVFRKVWEMACWAGFVS 121

Query: 173 TQAVLPGMLKRKKGLSMLNIG 193
            +     ML   +G  +   G
Sbjct: 122 GRESARLMLAHGQG-KIFFTG 141

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} Length = 264

 Score = 92.2 bits (230), Expect = 4e-23
 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 7/142 (4%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSV-VV 111
               L+TG + GIG+  A +L   G  ++L  R   +++ ++  I+        + + V 
Sbjct: 4   DKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVT 63

Query: 112 DFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           D    +    +   +    +D  VL+NN G+          V     + +I VN++G   
Sbjct: 64  DRH-SVAAFAQAAVDTWGRID--VLVNNAGVM--PLSPLAAVKVDEWERMIDVNIKGVLW 118

Query: 172 VTQAVLPGMLKRKKGLSMLNIG 193
              AVLP M  ++ G  ++NIG
Sbjct: 119 GIGAVLPIMEAQRSG-QIINIG 139

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286

 Score = 92.7 bits (231), Expect = 4e-23
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 8/133 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            +VTG + GIG+  A+ LAK G ++V+  R+ + L+ V        A      +      
Sbjct: 31  VIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAA-SAHYIAGTMED 89

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
               ++ V +  + + GLD  +LI N   +          D   ++  ++VN      +T
Sbjct: 90  MTFAEQFVAQAGKLMGGLD--MLILNHITNTS--LNLFHDDIHHVRKSMEVNFLSYVVLT 145

Query: 174 QAVLPGMLKRKKG 186
            A LP MLK+  G
Sbjct: 146 VAALP-MLKQSNG 157

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252

 Score = 91.0 bits (227), Expect = 1e-22
 Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 9/141 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            LVTG +DGIG+  A   A+ G  ++L+GRN +KL+ V+  I  +  + Q +  ++D   
Sbjct: 15  ILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGR-QPQWFILDLLT 73

Query: 116 ----DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
               +  +  +RI      LD   +++N G+         E +  + +++++VNV  T  
Sbjct: 74  CTSENCQQLAQRIAVNYPRLD--GVLHNAGLLGDVCP-MSEQNPQVWQDVMQVNVNATFM 130

Query: 172 VTQAVLPGMLKRKKGLSMLNI 192
           +TQA+LP +LK   G S++  
Sbjct: 131 LTQALLPLLLKSDAG-SLVFT 150

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Length = 247

 Score = 89.9 bits (224), Expect = 2e-22
 Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAK-YAKTQIKSVVVDFS 114
            LVTG   GIG + A   A  G ++VL+GR    L +VSD I++    +  I ++ ++ +
Sbjct: 17  ILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENA 76

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
                 E   R++     LD   L++N  I  P      ++       ++ VNV  T  +
Sbjct: 77  TAQQYRELAARVEHEFGRLD--GLLHNASIIGPRTP-LEQLPDEDFMQVMHVNVNATFML 133

Query: 173 TQAVLPGMLKRKKGLSMLNI 192
           T+A+LP + + +   S+   
Sbjct: 134 TRALLPLLKRSEDA-SIAFT 152

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* Length = 263

 Score = 88.7 bits (221), Expect = 7e-22
 Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 8/139 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A++TG + GIG + A   AK G ++VLV R  D+L + + S++ K+   ++  V VD + 
Sbjct: 10  AVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVAT 68

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              +D  VE ++ +  G D  +L+NN G          E      +   ++ V    ++ 
Sbjct: 69  PEGVDAVVESVRSSFGGAD--ILVNNAGT--GSNETIMEAADEKWQFYWELLVMAAVRLA 124

Query: 174 QAVLPGMLKRKKGLSMLNI 192
           + ++PGM  R  G ++++ 
Sbjct: 125 RGLVPGMRARGGG-AIIHN 142

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Length = 260

 Score = 88.7 bits (221), Expect = 8e-22
 Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 16/144 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG + GIG     +LA  G ++    RN  +L D     ++K    ++++ V D S 
Sbjct: 12  ALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSS 69

Query: 115 -GDLDEGVERIKEAIEG-LDVGVLINNVGISY--PYARFFHEV-DQVLLKNLIKVNVEGT 169
             +  E +  +     G L+  +L+NN GI        +  E    +     + +N E  
Sbjct: 70  RSERQELMNTVANHFHGKLN--ILVNNAGIVIYKEAKDYTVEDYSLI-----MSINFEAA 122

Query: 170 TKVTQAVLPGMLKRKKGLSMLNIG 193
             ++    P +   ++G +++ I 
Sbjct: 123 YHLSVLAHPFLKASERG-NVVFIS 145

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Length = 273

 Score = 88.0 bits (219), Expect = 2e-21
 Identities = 30/144 (20%), Positives = 62/144 (43%), Gaps = 16/144 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG + GIG +   +LA  G  +    RN  +L +  +  + K     ++  V D   
Sbjct: 24  ALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVCDLLS 81

Query: 115 -GDLDEGVERIKEAIEG-LDVGVLINNVGISY--PYARFFHEV-DQVLLKNLIKVNVEGT 169
             + D+ ++ +    +G L+  +L+NN G+        F  +  + +     +  N E  
Sbjct: 82  RTERDKLMQTVAHVFDGKLN--ILVNNAGVVIHKEAKDFTEKDYNII-----MGTNFEAA 134

Query: 170 TKVTQAVLPGMLKRKKGLSMLNIG 193
             ++Q   P +   + G +++ + 
Sbjct: 135 YHLSQIAYPLLKASQNG-NVIFLS 157

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254

 Score = 87.3 bits (217), Expect = 3e-21
 Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 16/134 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            +      GIG   + +L K  L   ++    +    +++ ++A   K  I     D + 
Sbjct: 8   VIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAE-LKAINPKVNITFHTYDVTV 66

Query: 116 DLDEGVERIKEAIE---GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
            + E  + +K+  +    +D  +LIN  GI        H++++      I +N  G    
Sbjct: 67  PVAESKKLLKKIFDQLKTVD--ILINGAGILDD-----HQIERT-----IAINFTGLVNT 114

Query: 173 TQAVLPGMLKRKKG 186
           T A+L    KRK G
Sbjct: 115 TTAILDFWDKRKGG 128

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} Length = 234

 Score = 86.4 bits (215), Expect = 4e-21
 Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 13/140 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            L+TG + GIG++ A  L   G  + L+ R+  +L+ ++  ++          +  D   
Sbjct: 8   VLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALP------LPGDVRE 61

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
            GD    V  ++EA   L    L+NN G+     +  HE+     + ++  N+ G     
Sbjct: 62  EGDWARAVAAMEEAFGELS--ALVNNAGVG--VMKPVHELTLEEWRLVLDTNLTGAFLGI 117

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           +  +P +L+R  G +++N+G
Sbjct: 118 RHAVPALLRRGGG-TIVNVG 136

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Length = 265

 Score = 86.8 bits (216), Expect = 5e-21
 Identities = 24/143 (16%), Positives = 57/143 (39%), Gaps = 13/143 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A+VTG + GIG +    L + G  +    R+ ++L+    +++ ++   ++ + V D   
Sbjct: 11  AVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLD 70

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARFFHEV-DQVLLKNLIKVNVEGTT 170
              +    E  +  +      +L+NN G      +A    E   +      +++      
Sbjct: 71  ALQVRAFAEACERTLGCAS--ILVNNAGQGRVSTFAETTDEAWSEE-----LQLKFFSVI 123

Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
              +A LP +  R    +++ + 
Sbjct: 124 HPVRAFLPQLESRADA-AIVCVN 145

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280

 Score = 86.9 bits (216), Expect = 6e-21
 Identities = 31/134 (23%), Positives = 67/134 (50%), Gaps = 7/134 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAK-YAKTQIKSVVVDFS 114
            ++TG ++GIG++ A   A+ G N+ + GR+ ++L++    I     ++ Q+ SVV D +
Sbjct: 9   VIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVT 68

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARFFHEVDQVLLKNLIKVNVEGTT 170
                D+ +    +    +D  VL+NN G +    +     +    +    +K+N++   
Sbjct: 69  TEDGQDQIINSTLKQFGKID--VLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVI 126

Query: 171 KVTQAVLPGMLKRK 184
           ++T+ V P ++  K
Sbjct: 127 EMTKKVKPHLVASK 140

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} Length = 255

 Score = 86.4 bits (215), Expect = 6e-21
 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 20/146 (13%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG   G+G ++A  LA  G  ++L       L +  D++  K        V  D + 
Sbjct: 12  ALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAH--GVAFDVTD 69

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARF----FHEVDQVLLKNLIKVNVE 167
              ++    ++      +D  +LINN GI Y  P        + +V        I  N+ 
Sbjct: 70  ELAIEAAFSKLDAEGIHVD--ILINNAGIQYRKPMVELELENWQKV--------IDTNLT 119

Query: 168 GTTKVTQAVLPGMLKRKKGLSMLNIG 193
               V+++    M+ R  G  ++NIG
Sbjct: 120 SAFLVSRSAAKRMIARNSGGKIINIG 145

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207

 Score = 85.3 bits (212), Expect = 6e-21
 Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 19/131 (14%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            L+TG T G+G +FA  L   G +L+L GR    L +++  + A+        +  D + 
Sbjct: 3   VLITGATGGLGGAFARALK--GHDLLLSGRRAGALAELAREVGARA-------LPADLA- 52

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           D +   + + E    LD  +L++ VG +        E  + L++ ++  ++         
Sbjct: 53  D-ELEAKALLEEAGPLD--LLVHAVGKAGR--ASVREAGRDLVEEMLAAHLLT----AAF 103

Query: 176 VLPGMLKRKKG 186
           VL     +K  
Sbjct: 104 VLKHARFQKGA 114

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281

 Score = 86.8 bits (216), Expect = 6e-21
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 7/140 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAK-TQIKSVVVDFS 114
            LVTG   GIGK  A  L   G ++++VGRNPDKL      ++A  A    I+    D +
Sbjct: 14  YLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDIT 73

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
              +    V+ +      L    +++  G S        +VD    +  + +NV GT  V
Sbjct: 74  NEDETARAVDAVTAWHGRLH--GVVHCAGGSENIGP-ITQVDSEAWRRTVDLNVNGTMYV 130

Query: 173 TQAVLPGMLKRKKGLSMLNI 192
            +     M++   G S + I
Sbjct: 131 LKHAAREMVRGGGG-SFVGI 149

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235

 Score = 85.7 bits (213), Expect = 8e-21
 Identities = 22/140 (15%), Positives = 53/140 (37%), Gaps = 13/140 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            +VTG   G+G++    L + G  + ++GR   +L+     +        +  +V D + 
Sbjct: 6   IIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGN-----AVIGIVADLAH 60

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             D+D       E     +  ++++  G                ++ +++ N+  T  V 
Sbjct: 61  HEDVDVAFAAAVEWGGLPE--LVLHCAGTG--EFGPVGVYTAEQIRRVMESNLVSTILVA 116

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           Q  +  +   + G  + N+ 
Sbjct: 117 QQTVRLI-GERGG-VLANVL 134

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Length = 262

 Score = 85.7 bits (213), Expect = 1e-20
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 16/143 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A+VTG + GIG + A +L   G  +VL  R+ +KL+ V   I A  A  + +S   D S 
Sbjct: 32  AVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVA--AGGEAESHACDLSH 89

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFH----EVDQVLLKNLIKVNVEGT 169
              +      +  A    D  VL+NN G+ +           E D +     I VN++  
Sbjct: 90  SDAIAAFATGVLAAHGRCD--VLVNNAGVGWFGGPLHTMKPAEWDAL-----IAVNLKAP 142

Query: 170 TKVTQAVLPGMLKRKKGLSMLNI 192
             + +A  P M+  K+G  ++NI
Sbjct: 143 YLLLRAFAPAMIAAKRG-HIINI 164

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302

 Score = 86.1 bits (214), Expect = 1e-20
 Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 19/145 (13%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A +TG   G+GK     L+  G   V+  R  D LK  ++ I ++    ++ ++  D   
Sbjct: 29  AFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGN-KVHAIQCDVRD 87

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARF----FHEVDQVLLKNLIKVNVE 167
              +   V  + +     +  ++INN   ++  P  R     +  +          + + 
Sbjct: 88  PDMVQNTVSELIKVAGHPN--IVINNAAGNFISPTERLSPNAWKTI--------TDIVLN 137

Query: 168 GTTKVTQAVLPGMLKRKKGLSMLNI 192
           GT  VT  +   ++K +KG + L+I
Sbjct: 138 GTAFVTLEIGKQLIKAQKGAAFLSI 162

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Length = 249

 Score = 85.3 bits (212), Expect = 2e-20
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 20/140 (14%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
               LV   + GIG++ A  L++ G  + +  RN + LK                     
Sbjct: 19  DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVV------------- 65

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
              DL + ++ + E ++ +D  +L+ N G   P A FF E+     K  I        K+
Sbjct: 66  --CDLRKDLDLLFEKVKEVD--ILVLNAGG--PKAGFFDELTNEDFKEAIDSLFLNMIKI 119

Query: 173 TQAVLPGMLKRKKGLSMLNI 192
            +  LP M ++  G  ++ I
Sbjct: 120 VRNYLPAMKEKGWG-RIVAI 138

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 297

 Score = 85.8 bits (213), Expect = 2e-20
 Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 5/132 (3%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAK-TQIKSVVVDFS 114
            ++TG ++GIG+S A   AK G  + + GRN D+L++    I        +I +VV D +
Sbjct: 29  VIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVT 88

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
                D+ +         +D  +L+NN G +        +    L +   K+N +   ++
Sbjct: 89  EASGQDDIINTTLAKFGKID--ILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEM 146

Query: 173 TQAVLPGMLKRK 184
           TQ     ++K K
Sbjct: 147 TQKTKEHLIKTK 158

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Length = 279

 Score = 85.3 bits (212), Expect = 2e-20
 Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 7/140 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A VTG + GIG + A   A+ G ++ +   +    +      +        K+   + S 
Sbjct: 37  ASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKT--YGVHSKAYKCNISD 94

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              ++E + + ++    +D  V + N G+++         +      +I V++ G    +
Sbjct: 95  PKSVEETISQQEKDFGTID--VFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCS 152

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
             +     K  KG S++   
Sbjct: 153 HNIGKIFKKNGKG-SLIITS 171

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} Length = 260

 Score = 84.9 bits (211), Expect = 2e-20
 Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 8/140 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A+VTG    IG +    LA+ G  +++   +        + ++ +       SVV+D + 
Sbjct: 16  AIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDV--SSVVMDVTN 73

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              +   V  + E    +D  +L+   GI     +   ++        + +N+ G  +  
Sbjct: 74  TESVQNAVRSVHEQEGRVD--ILVACAGICISEVK-AEDMTDGQWLKQVDINLNGMFRSC 130

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           QAV   ML++K+G  ++ IG
Sbjct: 131 QAVGRIMLEQKQG-VIVAIG 149

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Length = 244

 Score = 84.5 bits (210), Expect = 2e-20
 Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 12/138 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG   GIG+     L  +G  +V V R    L  ++           I+ V VD   
Sbjct: 10  ALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPG------IEPVCVDLG- 62

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           D D   E+    I  +D  +L+NN  +       F EV +        VN+    +V+Q 
Sbjct: 63  DWDA-TEKALGGIGPVD--LLVNNAALVIMQP--FLEVTKEAFDRSFSVNLRSVFQVSQM 117

Query: 176 VLPGMLKRKKGLSMLNIG 193
           V   M+ R    S++N+ 
Sbjct: 118 VARDMINRGVPGSIVNVS 135

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272

 Score = 84.6 bits (210), Expect = 3e-20
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 10/145 (6%)

Query: 44  RPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAK 103
           +  K++   G   L+TG   GIG+  A++ AK    LVL   N   L++ +   +   AK
Sbjct: 24  KRRKSVT--GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAK 81

Query: 104 TQIKSVVVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNL 161
             + + VVD S   D+    +++K  I G DV +L+NN G+   Y           ++  
Sbjct: 82  --VHTFVVDCSNREDIYSSAKKVKAEI-G-DVSILVNNAGVV--YTSDLFATQDPQIEKT 135

Query: 162 IKVNVEGTTKVTQAVLPGMLKRKKG 186
            +VNV      T+A LP M K   G
Sbjct: 136 FEVNVLAHFWTTKAFLPAMTKNNHG 160

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Length = 266

 Score = 84.5 bits (210), Expect = 4e-20
 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 20/154 (12%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
               LVTG T GIG +   + A  G  +    RN  +L +     Q K    Q+   V D
Sbjct: 14  AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVCD 71

Query: 113 FS--GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARFFHE-VDQVLLKNLIKVNVE 167
            S   + ++ ++ +     G  + +LINN+G     P   +  E          I  N+E
Sbjct: 72  ASLRPEREKLMQTVSSMF-GGKLDILINNLGAIRSKPTLDYTAEDFSFH-----ISTNLE 125

Query: 168 GTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV 201
               ++Q   P +     G +++ +       S+
Sbjct: 126 SAYHLSQLAHPLLKASGCG-NIIFM------SSI 152

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Length = 247

 Score = 83.7 bits (208), Expect = 5e-20
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 10/143 (6%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  AL+TG + GIG++ A  LA  G  + +  R  +KL+ + D + A  A  ++  + +D
Sbjct: 7   GKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTA--AGAKVHVLELD 64

Query: 113 FS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
            +    +D  V    EA+ GLD  +L+NN GI         + D      +I  N+ G  
Sbjct: 65  VADRQGVDAAVASTVEALGGLD--ILVNNAGIM--LLGPVEDADTTDWTRMIDTNLLGLM 120

Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
            +T+A LP +  R KG +++ + 
Sbjct: 121 YMTRAALPHL-LRSKG-TVVQMS 141

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266

 Score = 83.7 bits (208), Expect = 6e-20
 Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 13/143 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           AL+TG T GIG   A   A  G  LVL GR+  +L     ++  ++    + +V +D + 
Sbjct: 23  ALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGT-DVHTVAIDLAE 81

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARFFHEV-DQVLLKNLIKVNVEGTT 170
                E   R  EA  GLD  VL+NN GIS+  P      ++ D       I VN+    
Sbjct: 82  PDAPAELARRAAEAFGGLD--VLVNNAGISHPQPVVDTDPQLFDAT-----IAVNLRAPA 134

Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
            +  AV   M+   +G +++ + 
Sbjct: 135 LLASAVGKAMVAAGEGGAIITVA 157

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} Length = 266

 Score = 83.8 bits (208), Expect = 6e-20
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 15/140 (10%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            ++TG + GIG++ A + ++ G  L+L+ R  ++LK +                 VD + 
Sbjct: 19  VVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKAL--------NLPNTLCAQVDVTD 70

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
               D  + R ++     D   ++NN G+           +    + +  VNV G     
Sbjct: 71  KYTFDTAITRAEKIYGPAD--AIVNNAGMMLL--GQIDTQEANEWQRMFDVNVLGLLNGM 126

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           QAVL  M  R  G +++NI 
Sbjct: 127 QAVLAPMKARNCG-TIINIS 145

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Length = 260

 Score = 83.7 bits (208), Expect = 7e-20
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 4/137 (2%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVT  TDGIG + A +LA+ G ++V+  R  + +     ++Q +          V  + 
Sbjct: 17  ALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAE 76

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           D +  V        G+D  +L++N  ++ P+     +  + +   ++ VNV+ T  +T+A
Sbjct: 77  DRERLVAMAVNLHGGVD--ILVSNAAVN-PFFGNIIDATEEVWDKILHVNVKATVLMTKA 133

Query: 176 VLPGMLKRKKGLSMLNI 192
           V+P M KR  G S+L +
Sbjct: 134 VVPEMEKRGGG-SVLIV 149

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Length = 244

 Score = 83.3 bits (207), Expect = 7e-20
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 12/138 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            LVTG   GIG+     L  TG  +V V R    L  +            I+ V VD   
Sbjct: 10  VLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPG------IEPVCVDLG- 62

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           D +   ER   ++  +D  +L+NN  ++    + F EV +       +VN+    +V+Q 
Sbjct: 63  DWEA-TERALGSVGPVD--LLVNNAAVALL--QPFLEVTKEAFDRSFEVNLRAVIQVSQI 117

Query: 176 VLPGMLKRKKGLSMLNIG 193
           V  G++ R    +++N+ 
Sbjct: 118 VARGLIARGVPGAIVNVS 135

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Length = 276

 Score = 83.0 bits (206), Expect = 1e-19
 Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 22/147 (14%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           AL+TG + GIGK  A   A+ G  + +  R+ D L+ V+D I     K     +  D + 
Sbjct: 35  ALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKA--LPIRCDVTQ 92

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGIS-------YPYARFFHEVDQVLLKNLIKVNV 166
              +   ++++   + G+D  + + N GI         P   F     ++        NV
Sbjct: 93  PDQVRGMLDQMTGELGGID--IAVCNAGIVSVQAMLDMPLEEF----QRI-----QDTNV 141

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
            G     QA    M+ +  G +++   
Sbjct: 142 TGVFLTAQAAARAMVDQGLGGTIITTA 168

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267

 Score = 82.6 bits (205), Expect = 2e-19
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 20/146 (13%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG + G+G   A  LA+ G ++V+  RN ++  + +  +  KY   +  +   D S 
Sbjct: 24  ALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSN 82

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARF----FHEVDQVLLKNLIKVNVE 167
             ++ + +E +KE    LD   ++N  GI+   P   F    F +V        I+VN+ 
Sbjct: 83  YEEVKKLLEAVKEKFGKLD--TVVNAAGINRRHPAEEFPLDEFRQV--------IEVNLF 132

Query: 168 GTTKVTQAVLPGMLKRKKGLSMLNIG 193
           GT  V +     + +     S++NIG
Sbjct: 133 GTYYVCREAFSLLRESDNP-SIINIG 157

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254

 Score = 81.8 bits (203), Expect = 3e-19
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 18/143 (12%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A VTG   GIG       A +G  L+L+ R    L   +  + A  A      +V D + 
Sbjct: 14  AAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVA----ARIVADVTD 69

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARFFHEV-DQVLLKNLIKVNVEGTT 170
              +        EA+  +   +L+N+ GI+              QV     + VNV+G  
Sbjct: 70  AEAMTAAAAEA-EAVAPVS--ILVNSAGIARLHDALETDDATWRQV-----MAVNVDGMF 121

Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
             ++A    M+ R  G +++N+G
Sbjct: 122 WASRAFGRAMVARGAG-AIVNLG 143

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Length = 247

 Score = 81.8 bits (203), Expect = 3e-19
 Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 19/145 (13%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG + GIG   A  LA  G  +V    +    +   +S++ K  K +   + +    
Sbjct: 8   ALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIE 67

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNVEG 168
            +      IK     +D  +L+NN GI+    R     D ++++       ++I  N+  
Sbjct: 68  SIQNFFAEIKAENLAID--ILVNNAGIT----R-----DNLMMRMSEDEWQSVINTNLSS 116

Query: 169 TTKVTQAVLPGMLKRKKGLSMLNIG 193
             ++++  + GM+K++ G  +++IG
Sbjct: 117 IFRMSKECVRGMMKKRWG-RIISIG 140

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Length = 285

 Score = 82.2 bits (204), Expect = 3e-19
 Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 23/147 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG   GIG+  A  LAK+  +++ + R       V D I++     +      D S 
Sbjct: 47  ALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS--FGYESSGYAGDVSK 104

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNV 166
             ++ E + +I    + +D  +L+NN GI+    R     D + L+       ++++ N+
Sbjct: 105 KEEISEVINKILTEHKNVD--ILVNNAGIT----R-----DNLFLRMKNDEWEDVLRTNL 153

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
                +TQ +   M+  + G  ++NI 
Sbjct: 154 NSLFYITQPISKRMINNRYG-RIINIS 179

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Length = 256

 Score = 81.8 bits (203), Expect = 3e-19
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG   GIGK+ A +L K G  + +   N    K V+  I          +V VD S 
Sbjct: 5   ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHA--VAVKVDVSD 62

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              +   VE+ ++ + G D  V++NN G++         +   ++  +  +NV+G     
Sbjct: 63  RDQVFAAVEQARKTLGGFD--VIVNNAGVAPS--TPIESITPEIVDKVYNINVKGVIWGI 118

Query: 174 QAVLPGMLKRKKGLSMLNI 192
           QA +    K   G  ++N 
Sbjct: 119 QAAVEAFKKEGHGGKIINA 137

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Length = 244

 Score = 81.1 bits (201), Expect = 4e-19
 Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 18/148 (12%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLN-------LVLVGRNPDKLKDVSDSIQAKYAKTQIKS 108
            L+TG   GIG++ A + A+   +       LVL  R    L+ +S   +A+ A T   +
Sbjct: 5   LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTIT 64

Query: 109 VVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARF-FHEVDQVLLKNLIKVN 165
             +    D+      I E    +D   L+NN G+      +     + D       +  N
Sbjct: 65  ADISDMADVRRLTTHIVERYGHIDC--LVNNAGVGRFGALSDLTEEDFDYT-----MNTN 117

Query: 166 VEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           ++GT  +TQA+   M ++  G  +  I 
Sbjct: 118 LKGTFFLTQALFALMERQHSG-HIFFIT 144

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Length = 303

 Score = 81.9 bits (203), Expect = 5e-19
 Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 16/145 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKT---QIKSVVVD 112
           A+VTG   GIGK+   +L + G N+V+  R  ++LK  +D +QA    T   ++  +  +
Sbjct: 21  AIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCN 80

Query: 113 FS--GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARF-FHEVDQVLLKNLIKVNVE 167
                +++  V+   +    ++   L+NN G  +  P           V     ++ N+ 
Sbjct: 81  IRNEEEVNNLVKSTLDTFGKIN--FLVNNGGGQFLSPAEHISSKGWHAV-----LETNLT 133

Query: 168 GTTKVTQAVLPGMLKRKKGLSMLNI 192
           GT  + +AV    +K   G S++NI
Sbjct: 134 GTFYMCKAVYSSWMKEHGG-SIVNI 157

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} Length = 257

 Score = 81.0 bits (201), Expect = 6e-19
 Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 14/142 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            ++TG + G+GK  A + AK G  +V+ GR  +KL++    I+      QI +V +D   
Sbjct: 9   VIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQ--FPGQILTVQMDVRN 66

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARF-FHEVDQVLLKNLIKVNVEGTT 170
             D+ + +E+I E    +D  +LINN   ++  P      +  + V     I + + GT 
Sbjct: 67  TDDIQKMIEQIDEKFGRID--ILINNAAGNFICPAEDLSVNGWNSV-----INIVLNGTF 119

Query: 171 KVTQAVLPGMLKRKKGLSMLNI 192
             +QA+    +++    +++N+
Sbjct: 120 YCSQAIGKYWIEKGIKGNIINM 141

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Length = 281

 Score = 81.5 bits (202), Expect = 6e-19
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 15/144 (10%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           A++TG T GIG + A  LAK G N+VL G   PD+++ V+D +    +   +     D +
Sbjct: 28  AVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSS-GTVLHHPADMT 86

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARFFHEV-DQVLLKNLIKVNVEGT 169
              ++ + +  + +   G D  +L+NN G+ +      F  E  D++     I VN+  +
Sbjct: 87  KPSEIADMMAMVADRFGGAD--ILVNNAGVQFVEKIEDFPVEQWDRI-----IAVNLSSS 139

Query: 170 TKVTQAVLPGMLKRKKGLSMLNIG 193
               +  +P M K+  G  ++NI 
Sbjct: 140 FHTIRGAIPPMKKKGWG-RIINIA 162

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Length = 260

 Score = 81.1 bits (201), Expect = 6e-19
 Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 13/145 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            +VTG + GIG+  A QL K G  + + GR+ D L+ V+   Q+     Q   VV D S 
Sbjct: 8   CVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQS--LGGQCVPVVCDSSQ 65

Query: 115 -GDLDEGVERI-KEAIEGLDVGVLINNVGISYPYARF-----FHEVDQVLLKNLIKVNVE 167
             ++    E++ +E    LD  VL+NN               F E    +  ++  V + 
Sbjct: 66  ESEVRSLFEQVDREQQGRLD--VLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLR 123

Query: 168 GTTKVTQAVLPGMLKRKKGLSMLNI 192
           G    +      M+   +GL ++ I
Sbjct: 124 GHYFCSVYGARLMVPAGQGL-IVVI 147

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Length = 255

 Score = 80.2 bits (199), Expect = 9e-19
 Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 22/145 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A++TG   GIGK  A   A  G ++V+   N D    V D IQ    +    +   D + 
Sbjct: 14  AIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQA--FACRCDITS 71

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGIS------YPYARFFHEVDQVLLKNLIKVNVE 167
             +L    +     +  +D  +L+NN G         P A F     +       ++NV 
Sbjct: 72  EQELSALADFAISKLGKVD--ILVNNAGGGGPKPFDMPMADF----RRA-----YELNVF 120

Query: 168 GTTKVTQAVLPGMLKRKKGLSMLNI 192
               ++Q V P M K   G  +L I
Sbjct: 121 SFFHLSQLVAPEMEKNGGG-VILTI 144

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Length = 270

 Score = 80.3 bits (199), Expect = 1e-18
 Identities = 35/147 (23%), Positives = 72/147 (48%), Gaps = 23/147 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A+VTG + GIG++ A +LA+ G  ++         + +  + +   A  + +  V++ + 
Sbjct: 31  AIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQ--AGLEGRGAVLNVND 88

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNV 166
              +D  VE   +    L+  VL+NN GI+    +     DQ+ ++        +I  N+
Sbjct: 89  ATAVDALVESTLKEFGALN--VLVNNAGIT----Q-----DQLAMRMKDDEWDAVIDTNL 137

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           +   ++++AVL  M+K + G  ++NI 
Sbjct: 138 KAVFRLSRAVLRPMMKARGG-RIVNIT 163

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} Length = 263

 Score = 80.3 bits (199), Expect = 1e-18
 Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 19/143 (13%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A+VTG + GIG + A  L K G  + +   +    + V   ++         +V VD + 
Sbjct: 15  AIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENG-----GFAVEVDVTK 69

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFH----EVDQVLLKNLIKVNVEGT 169
              +D  +++  +A+ G D  +L  N G+S            E D         VN  G 
Sbjct: 70  RASVDAAMQKAIDALGGFD--LLCANAGVS-TMRPAVDITDEEWDFN-----FDVNARGV 121

Query: 170 TKVTQAVLPGMLKRKKGLSMLNI 192
               Q      L       ++N 
Sbjct: 122 FLANQIACRHFLASNTKGVIVNT 144

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* Length = 260

 Score = 80.0 bits (198), Expect = 1e-18
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 15/144 (10%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           A+VTG T GIG   A  LA  G ++VL G     +++ V   + A++   ++     D S
Sbjct: 7   AVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHG-VKVLYDGADLS 65

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARFFHEV-DQVLLKNLIKVNVEGT 169
               +   V+     +  +D  +L+NN GI +      F  E  D +     + +N+   
Sbjct: 66  KGEAVRGLVDNAVRQMGRID--ILVNNAGIQHTALIEDFPTEKWDAI-----LALNLSAV 118

Query: 170 TKVTQAVLPGMLKRKKGLSMLNIG 193
              T A LP M K+  G  ++NI 
Sbjct: 119 FHGTAAALPHMKKQGFG-RIINIA 141

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264

 Score = 79.9 bits (198), Expect = 2e-18
 Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 9/139 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            +++G    +G + A + A+ G +LVL  R  ++L+DV+  +     +    SV  D + 
Sbjct: 14  VVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRAL--SVGTDITD 71

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              +   V+   +A   +D  V+INN          F       +++ I++ V G  ++ 
Sbjct: 72  DAQVAHLVDETMKAYGRVD--VVINNAFRVPSMKP-FANTTFEHMRDAIELTVFGALRLI 128

Query: 174 QAVLPGMLKRKKGLSMLNI 192
           Q   P + +  KG +++N+
Sbjct: 129 QGFTPAL-EESKG-AVVNV 145

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Length = 256

 Score = 79.5 bits (197), Expect = 2e-18
 Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 22/145 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A+VTG   GIG++ A   AK G ++V+     +  + V+ +I+   A  +   +  + + 
Sbjct: 15  AIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQ--AGGKAIGLECNVTD 72

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGIS------YPYARFFHEVDQVLLKNLIKVNVE 167
               +  ++   +    +   VL+NN G         P + F    +        K+N+ 
Sbjct: 73  EQHREAVIKAALDQFGKIT--VLVNNAGGGGPKPFDMPMSDF----EWA-----FKLNLF 121

Query: 168 GTTKVTQAVLPGMLKRKKGLSMLNI 192
              +++Q   P M K   G ++LNI
Sbjct: 122 SLFRLSQLAAPHMQKAGGG-AILNI 145

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Length = 262

 Score = 79.5 bits (197), Expect = 2e-18
 Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 8/139 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            LVTG    IG + A +LA+ G  + L+  N + L+    S++      + +S V D + 
Sbjct: 10  CLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVRE--KGVEARSYVCDVTS 67

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              +   V+ +      +D   L NN G    +A    +        ++ +NV G   V 
Sbjct: 68  EEAVIGTVDSVVRDFGKID--FLFNNAGYQGAFAP-VQDYPSDDFARVLTINVTGAFHVL 124

Query: 174 QAVLPGMLKRKKGLSMLNI 192
           +AV   M+ +  G  ++N 
Sbjct: 125 KAVSRQMITQNYG-RIVNT 142

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 278

 Score = 79.6 bits (197), Expect = 3e-18
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAK-YAKTQIKSVVVDFS 114
           A++TG ++GIG++ A   A+ G  + + GR+ ++L++    I A   ++  + SVV D +
Sbjct: 9   AIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVT 68

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARF--FHEVDQVLLKNLIKVNVEGTT 170
                DE +         LD  +L+NN G + P ++               + +N+    
Sbjct: 69  TDAGQDEILSTTLGKFGKLD--ILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVI 126

Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
            +T+  +P  L   KG  ++NI 
Sbjct: 127 ALTKKAVP-HLSSTKG-EIVNIS 147

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Length = 293

 Score = 79.6 bits (197), Expect = 3e-18
 Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 22/146 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            LVTG T GIG+  A   A+ G N+ +  R+P +L  V+  +    A   +  V +D S 
Sbjct: 44  VLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGA-GNVIGVRLDVSD 102

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNV 166
            G   +    + +A   LD  V+  N GI           +  L          ++ VNV
Sbjct: 103 PGSCADAARTVVDAFGALD--VVCANAGIF----P-----EARLDTMTPEQLSEVLDVNV 151

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNI 192
           +GT    QA L  +    +G  ++  
Sbjct: 152 KGTVYTVQACLAPLTASGRG-RVILT 176

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Length = 267

 Score = 79.1 bits (196), Expect = 3e-18
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 6/139 (4%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            L+TG   G+G++ A +LA  G  L LV  + + L+    ++       ++ + V D S 
Sbjct: 16  VLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD 75

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              ++  V    E    +D     NN GI                  ++ +N+ G     
Sbjct: 76  EAQVEAYVTATTERFGRID--GFFNNAGIEGKQNP-TESFTAAEFDKVVSINLRGVFLGL 132

Query: 174 QAVLPGMLKRKKGLSMLNI 192
           + VL  M ++  G  ++N 
Sbjct: 133 EKVLKIMREQGSG-MVVNT 150

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} Length = 262

 Score = 78.8 bits (195), Expect = 4e-18
 Identities = 35/146 (23%), Positives = 54/146 (36%), Gaps = 22/146 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            +VTG T GIG+  A   A+ G N+ + GR+   +      +    +  ++  V  D S 
Sbjct: 13  VVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGS-GKVIGVQTDVSD 71

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNV 166
               D    R  E   G+D  V+  N G+           D  L          +  VNV
Sbjct: 72  RAQCDALAGRAVEEFGGID--VVCANAGVF---------PDAPLATMTPEQLNGIFAVNV 120

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNI 192
            GT    QA L  ++    G  ++  
Sbjct: 121 NGTFYAVQACLDALIASGSG-RVVLT 145

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} Length = 253

 Score = 78.7 bits (195), Expect = 4e-18
 Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 20/146 (13%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            +VTG   GIG+++A  LA+ G  +V+   N +  + V+  I A        SV VD S 
Sbjct: 12  GIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTA--ISVAVDVSD 69

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNV 166
                   +R      G+D   L+NN  I              LL          + VN+
Sbjct: 70  PESAKAMADRTLAEFGGID--YLVNNAAIFGGMK------LDFLLTIDPEYYKKFMSVNL 121

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNI 192
           +G    T+AV   M KR  G +++N 
Sbjct: 122 DGALWCTRAVYKKMTKRGGG-AIVNQ 146

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279

 Score = 79.2 bits (196), Expect = 4e-18
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 20/140 (14%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A VTG + GIG + A  LA  G+ +    R+   +    D ++A        S  V  + 
Sbjct: 27  AFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTD 86

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNVEG 168
           ++   V    E    +   +L+N+ G +                       +++  N+ G
Sbjct: 87  EVHAAVAAAVERFGPIG--ILVNSAGRN---------GGGETADLDDALWADVLDTNLTG 135

Query: 169 TTKVTQAVLP--GMLKRKKG 186
             +VT+ VL   GM +   G
Sbjct: 136 VFRVTREVLRAGGMREAGWG 155

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Length = 264

 Score = 78.8 bits (195), Expect = 4e-18
 Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 24/151 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQI-----KSVV 110
           ALVTG   GIG++ + +LA  G  +     +    ++    +    +K         +  
Sbjct: 10  ALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQ 69

Query: 111 VDFSGDLDEGVERIKEAIE--GLDVGVLINNVGISYPYARFFHEVDQVLLK-------NL 161
            D S +       +++          V+++  GI     +     D+ LL         +
Sbjct: 70  ADVS-EARAARCLLEQVQACFSRPPSVVVSCAGI----TQ-----DEFLLHMSEDDWDKV 119

Query: 162 IKVNVEGTTKVTQAVLPGMLKRKKGLSMLNI 192
           I VN++GT  VTQA    ++      S++NI
Sbjct: 120 IAVNLKGTFLVTQAAAQALVSNGCRGSIINI 150

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 245

 Score = 78.3 bits (194), Expect = 4e-18
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 28/146 (19%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            L+TG   GIG++     AK G  LV        L++ ++++ A         VV+D + 
Sbjct: 8   VLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGA-------HPVVMDVAD 60

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNV 166
              ++ G       +  LD   +++  GI+    R     D    K        +++VN+
Sbjct: 61  PASVERGFAEALAHLGRLD--GVVHYAGIT----R-----DNFHWKMPLEDWELVLRVNL 109

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNI 192
            G+  V +A    M ++  G S++  
Sbjct: 110 TGSFLVAKAASEAMREKNPG-SIVLT 134

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319

 Score = 79.4 bits (196), Expect = 5e-18
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 6/133 (4%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A VTG  +G+G     QL   G  + +     D +     +++A+ +  ++  V +D + 
Sbjct: 11  AFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS 70

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
                   + ++     +   +L NN G++    +   E        L+ VN+ G     
Sbjct: 71  REGFKMAADEVEARFGPVS--ILCNNAGVN--LFQPIEESSYDDWDWLLGVNLHGVVNGV 126

Query: 174 QAVLPGMLKRKKG 186
              +P M++R K 
Sbjct: 127 TTFVPRMVERVKA 139

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Length = 248

 Score = 78.3 bits (194), Expect = 6e-18
 Identities = 37/147 (25%), Positives = 78/147 (53%), Gaps = 26/147 (17%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG + GIGK+ A  LA+ G  ++    +    + +SD +         K + ++ + 
Sbjct: 12  ALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDN-----GKGMALNVTN 66

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNV 166
              ++  ++ I +   G+D  +L+NN GI+    R     D +L++       ++++ N+
Sbjct: 67  PESIEAVLKAITDEFGGVD--ILVNNAGIT----R-----DNLLMRMKEEEWSDIMETNL 115

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
               ++++AVL GM+K+++G  ++N+G
Sbjct: 116 TSIFRLSKAVLRGMMKKRQG-RIINVG 141

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267

 Score = 78.4 bits (194), Expect = 6e-18
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 14/133 (10%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG   GIG++FA  L   G  + LV  N +       ++  ++   +   +  D + 
Sbjct: 10  ALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD 69

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              L +   ++ +    LD  +L+NN G++     +    ++      +++N+      T
Sbjct: 70  QQQLRDTFRKVVDHFGRLD--ILVNNAGVNNE-KNW----EKT-----LQINLVSVISGT 117

Query: 174 QAVLPGMLKRKKG 186
              L  M K+  G
Sbjct: 118 YLGLDYMSKQNGG 130

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} Length = 254

 Score = 78.1 bits (193), Expect = 7e-18
 Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 14/141 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVG--RNPDKLKDVSDSIQAKYAKTQIKSVVVDF 113
            LVTG + GIGKS    L     + V+ G  R+   LK + +    +        VV D 
Sbjct: 5   ILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDR-----FFYVVGDI 59

Query: 114 S--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           +    L + V    +    +D   L+ N G+  P     +E+D    K L  +N      
Sbjct: 60  TEDSVLKQLVNAAVKGHGKID--SLVANAGVLEPVQN-VNEIDVNAWKKLYDINFFSIVS 116

Query: 172 VTQAVLPGMLKRKKGLSMLNI 192
           +    LP  LK+  G +++ +
Sbjct: 117 LVGIALP-ELKKTNG-NVVFV 135

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A Length = 266

 Score = 78.0 bits (193), Expect = 8e-18
 Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 26/147 (17%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG T GIG++ A      G  + L G   DKLK+++  +        +     + S 
Sbjct: 30  ALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKD-----VFVFSANLSD 84

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNV 166
              + +  E  +  +EG+D  +L+NN GI+          D + ++       +++ VN+
Sbjct: 85  RKSIKQLAEVAEREMEGID--ILVNNAGIT---------RDGLFVRMQDQDWDDVLAVNL 133

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
              + +T+ ++  M++R+ G  ++NI 
Sbjct: 134 TAASTLTRELIHSMMRRRYG-RIINIT 159

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Length = 249

 Score = 77.5 bits (192), Expect = 1e-17
 Identities = 30/145 (20%), Positives = 64/145 (44%), Gaps = 26/145 (17%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           +L+TG + GIG + A  L K G  +++ G N +KLK + ++++           V + + 
Sbjct: 17  SLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDN-----YTIEVCNLAN 71

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLL-------KNLIKVNVEG 168
              E    +      LD  +L+ N GI+          D + +         +I +N++ 
Sbjct: 72  --KEECSNLISKTSNLD--ILVCNAGIT---------SDTLAIRMKDQDFDKVIDINLKA 118

Query: 169 TTKVTQAVLPGMLKRKKGLSMLNIG 193
              + +  +  M++++ G  ++NI 
Sbjct: 119 NFILNREAIKKMIQKRYG-RIINIS 142

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277

 Score = 78.1 bits (193), Expect = 1e-17
 Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 25/148 (16%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG T GIG   A +L K GL + +  R  + L+     ++   A  +      D   
Sbjct: 25  ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE--AGVEADGRTCDVRS 82

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNV 166
             +++  V  + E    +D  VL+NN G                 +       ++++ N+
Sbjct: 83  VPEIEALVAAVVERYGPVD--VLVNNAGRP----G-----GGATAELADELWLDVVETNL 131

Query: 167 EGTTKVTQAVLP--GMLKRKKGLSMLNI 192
            G  +VT+ VL   GML+R  G  ++NI
Sbjct: 132 TGVFRVTKQVLKAGGMLERGTG-RIVNI 158

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Length = 277

 Score = 78.1 bits (193), Expect = 1e-17
 Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 20/145 (13%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A +TG   GIG   A    + G + V+  R+  ++   +  +       +   + +D   
Sbjct: 30  AFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATG-RRCLPLSMDVRA 88

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARF----FHEVDQVLLKNLIKVNVE 167
              +   V++  +    +D  +LIN    ++  P        F  V        + ++  
Sbjct: 89  PPAVMAAVDQALKEFGRID--ILINCAAGNFLCPAGALSFNAFKTV--------MDIDTS 138

Query: 168 GTTKVTQAVLPGMLKRKKGLSMLNI 192
           GT  V++ +     +   G  ++NI
Sbjct: 139 GTFNVSRVLYEKFFRDHGG-VIVNI 162

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A Length = 239

 Score = 77.1 bits (191), Expect = 1e-17
 Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 22/142 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG + GIG++ A  L   G  + +  RNP++                   +  D   
Sbjct: 5   ALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAA----------QSLGAVPLPTDLEK 54

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARFFHEV-DQVLLKNLIKVNVEGTTK 171
            D    V+R  EA+ GL   VL++   ++   P     +E   +V     + ++++    
Sbjct: 55  DDPKGLVKRALEALGGLH--VLVHAAAVNVRKPALELSYEEWRRV-----LYLHLDVAFL 107

Query: 172 VTQAVLPGMLKRKKGLSMLNIG 193
           + QA  P M +   G  +L IG
Sbjct: 108 LAQAAAPHMAEAGWG-RVLFIG 128

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Length = 281

 Score = 77.3 bits (191), Expect = 2e-17
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 7/141 (4%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG   G+G+  A  L+  G ++V+ GR PD L   +  I  +     +++VV D   
Sbjct: 36  ALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTG-NIVRAVVCDVGD 94

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              +      ++     LD  +L+NN G + P      EV       ++  N+ G    T
Sbjct: 95  PDQVAALFAAVRAEFARLD--LLVNNAGSNVPPVP-LEEVTFEQWNGIVAANLTGAFLCT 151

Query: 174 QAVLPGMLKR-KKGLSMLNIG 193
           Q     M  +  +G  ++N G
Sbjct: 152 QHAFRMMKAQTPRGGRIINNG 172

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} Length = 245

 Score = 76.8 bits (190), Expect = 2e-17
 Identities = 36/148 (24%), Positives = 74/148 (50%), Gaps = 23/148 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKY--AKTQIKSVVVD 112
           AL+TG + GIG++ A +LA+ G  L +  G+N +K ++V++  + +       + + +++
Sbjct: 4   ALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLE 63

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVN 165
                   V +  E + GLD   L+NN GI+    R     D +L++        +++ N
Sbjct: 64  AE-AATALVHQAAEVLGGLD--TLVNNAGIT----R-----DTLLVRMKDEDWEAVLEAN 111

Query: 166 VEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           +    + T+  +  M+K + G  ++NI 
Sbjct: 112 LSAVFRTTREAVKLMMKARFG-RIVNIT 138

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Length = 276

 Score = 77.2 bits (191), Expect = 2e-17
 Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 21/136 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG + GIG+  A  L + G  + +  R+ +   D +  + A       +++  D S 
Sbjct: 32  ALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG---DCQAIPADLSS 88

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARF----FHEVDQVLLKNLIKVNVE 167
                   + + E    LD  +L+NN G S+      +    + +V        +++NV 
Sbjct: 89  EAGARRLAQALGELSARLD--ILVNNAGTSWGAALESYPVSGWEKV--------MQLNVT 138

Query: 168 GTTKVTQAVLPGMLKR 183
                 Q +LP + + 
Sbjct: 139 SVFSCIQQLLPLLRRS 154

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258

 Score = 76.8 bits (190), Expect = 2e-17
 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV--GRNPDKLKDVSDSIQAKYAKTQIKSVVVDF 113
           A+VTG   GIG+  + +LA  G ++ +    +  ++  +    I+A   K     V +D 
Sbjct: 5   AMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKA--VFVGLDV 62

Query: 114 S--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           +   + D  ++   E + G D  VL+NN GI+    +   EV +  LK +  VNV     
Sbjct: 63  TDKANFDSAIDEAAEKLGGFD--VLVNNAGIAQI--KPLLEVTEEDLKQIYSVNVFSVFF 118

Query: 172 VTQAVLPGMLKRKKGLSMLNI 192
             QA      +      ++N 
Sbjct: 119 GIQAASRKFDELGVKGKIINA 139

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A Length = 259

 Score = 76.8 bits (190), Expect = 2e-17
 Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 11/139 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           AL+TG   GIG++FA    + G  + +   + ++ +  +  I          +V +D + 
Sbjct: 11  ALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPA-----AYAVQMDVTR 65

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              +D  +    E   GLD  +L+NN  +         E+ +   + L  +NV GT    
Sbjct: 66  QDSIDAAIAATVEHAGGLD--ILVNNAALFDL--APIVEITRESYEKLFAINVAGTLFTL 121

Query: 174 QAVLPGMLKRKKGLSMLNI 192
           QA    M+ + +G  ++N+
Sbjct: 122 QAAARQMIAQGRGGKIINM 140

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* Length = 248

 Score = 76.4 bits (189), Expect = 2e-17
 Identities = 45/147 (30%), Positives = 80/147 (54%), Gaps = 22/147 (14%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           +LVTG T GIG++ A +LA  G  +++ G + ++ K V++ I  KY   +   V ++   
Sbjct: 10  SLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYG-VKAHGVEMNLLS 68

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNV 166
              +++  E I   ++G+D  +L+NN GI+    R     D++ L+        ++KVN+
Sbjct: 69  EESINKAFEEIYNLVDGID--ILVNNAGIT----R-----DKLFLRMSLLDWEEVLKVNL 117

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
            GT  VTQ  L  M+K++ G  ++NI 
Sbjct: 118 TGTFLVTQNSLRKMIKQRWG-RIVNIS 143

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} Length = 254

 Score = 76.4 bits (189), Expect = 3e-17
 Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            +VTG   GIG++ A + A     +V V    D+L  +   ++      ++  V  D S 
Sbjct: 10  VIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRG--MGKEVLGVKADVSK 67

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             D++E V R  E    +D  VL NN GI         EV   L + ++ VN+      +
Sbjct: 68  KKDVEEFVRRTFETYSRID--VLCNNAGIMDGVTP-VAEVSDELWERVLAVNLYSAFYSS 124

Query: 174 QAVLPGMLKRKKGLSMLNI 192
           +AV+P MLK+ KG  ++N 
Sbjct: 125 RAVIPIMLKQGKG-VIVNT 142

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Length = 272

 Score = 76.1 bits (188), Expect = 5e-17
 Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 10/133 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A+VTG   G+G++ A  LA  G  + L GR  D L++ +  I           V  D + 
Sbjct: 31  AIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGD-----DALCVPTDVTD 85

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              +        E    +D  VL NN G   P A    ++     K ++  N+ G    T
Sbjct: 86  PDSVRALFTATVEKFGRVD--VLFNNAGTGAP-AIPMEDLTFAQWKQVVDTNLTGPFLCT 142

Query: 174 QAVLPGMLKRKKG 186
           Q     M  ++  
Sbjct: 143 QEAFRVMKAQEPR 155

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} Length = 283

 Score = 76.1 bits (188), Expect = 5e-17
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 18/144 (12%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           AL+TG   GIG++ A  LA  G+ +  +GR   ++++V+D I    A  Q  ++  D S 
Sbjct: 31  ALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVG--AGGQAIALEADVSD 88

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEV-----DQVLLKNLIKVNVEG 168
              +   V  +      LD  +++ N GI+  +A    ++     D+      I VN+ G
Sbjct: 89  ELQMRNAVRDLVLKFGHLD--IVVANAGINGVWAP-IDDLKPFEWDET-----IAVNLRG 140

Query: 169 TTKVTQAVLPGMLKRKKGLSMLNI 192
           T       +P + +R  G +++ +
Sbjct: 141 TFLTLHLTVPYLKQRGGG-AIVVV 163

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A Length = 255

 Score = 75.7 bits (187), Expect = 6e-17
 Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 17/143 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG T GIG   A  LA+ G N+VL G            I       +      D S 
Sbjct: 7   ALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIAR--HGVKAVHHPADLSD 62

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARFFHEV-DQVLLKNLIKVNVEGTT 170
              ++      +    G+D  +L+NN GI +  P  +F  E  D++     I +N+    
Sbjct: 63  VAQIEALFALAEREFGGVD--ILVNNAGIQHVAPVEQFPLESWDKI-----IALNLSAVF 115

Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
             T+  LPGM  R  G  ++NI 
Sbjct: 116 HGTRLALPGMRARNWG-RIINIA 137

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* Length = 247

 Score = 75.2 bits (186), Expect = 6e-17
 Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 25/147 (17%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG   GIGK+ A +LA  G  +++   N +  K  + SI  K      +++  D S 
Sbjct: 9   ALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKK-----ARAIAADISD 63

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNV 166
            G +      I+    G+D  +L+NN  I                         +I VN+
Sbjct: 64  PGSVKALFAEIQALTGGID--ILVNNASIV----P-----FVAWDDVDLDHWRKIIDVNL 112

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
            GT  VT+A    M    K   +++I 
Sbjct: 113 TGTFIVTRAGTDQMRAAGKAGRVISIA 139

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Length = 265

 Score = 75.7 bits (187), Expect = 7e-17
 Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 21/147 (14%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            +VTG   GIG +F   +A  G N+ ++ R+     +V++ +  ++   + K+   D S 
Sbjct: 17  IIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSN 75

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGIS-------YPYARFFHEVDQVLLKNLIKVNV 166
              + + +++I   +  +    LI N G+S         +  F      V       VNV
Sbjct: 76  TDIVTKTIQQIDADLGPIS--GLIANAGVSVVKPATELTHEDF----AFV-----YDVNV 124

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
            G     +AV    L++++  S++   
Sbjct: 125 FGVFNTCRAVAKLWLQKQQKGSIVVTS 151

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 246

 Score = 75.2 bits (186), Expect = 7e-17
 Identities = 29/137 (21%), Positives = 61/137 (44%), Gaps = 14/137 (10%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            ++T    GIG++ A   A+ G  ++    N  KL+++             ++ V+D + 
Sbjct: 9   IILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGI-------QTRVLDVTK 61

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
              + +++    +E LD  VL N  G  +       + ++      + +NV     + +A
Sbjct: 62  --KKQIDQFANEVERLD--VLFNVAGFVHH--GTVLDCEEKDWDFSMNLNVRSMYLMIKA 115

Query: 176 VLPGMLKRKKGLSMLNI 192
            LP ML +K G +++N+
Sbjct: 116 FLPKMLAQKSG-NIINM 131

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Length = 247

 Score = 74.8 bits (185), Expect = 9e-17
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 24/148 (16%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           A+VTG + G+GK+ A++L   G N+VL G      L   ++  +A  A   +     D  
Sbjct: 8   AIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKA--AGINVVVAKGDVK 65

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVN 165
              D++  V+   +A   +D  +L+NN GI+    R     D ++LK       +++  N
Sbjct: 66  NPEDVENMVKTAMDAFGRID--ILVNNAGIT----R-----DTLMLKMSEKDWDDVLNTN 114

Query: 166 VEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           ++     T+AV   MLK+K G  ++NI 
Sbjct: 115 LKSAYLCTKAVSKIMLKQKSG-KIINIT 141

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} Length = 273

 Score = 75.3 bits (186), Expect = 1e-16
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 19/144 (13%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A+VTG   GIG++ A   A+ G +++  GR  D +K+V+D I       +  +VV D + 
Sbjct: 34  AVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADGGGSAE--AVVADLAD 90

Query: 116 DLDEGVERIKEAIE---GLDVGVLINNVGISY--PYARFFHEV-DQVLLKNLIKVNVEGT 169
              EG   + E +     +D  VL+NN GI    P          +V     + VN++  
Sbjct: 91  --LEGAANVAEELAATRRVD--VLVNNAGIIARAPAEEVSLGRWREV-----LTVNLDAA 141

Query: 170 TKVTQAVLPGMLKRKKGLSMLNIG 193
             ++++    ML    G  ++ I 
Sbjct: 142 WVLSRSFGTAMLAHGSG-RIVTIA 164

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245

 Score = 74.5 bits (184), Expect = 1e-16
 Identities = 25/139 (17%), Positives = 58/139 (41%), Gaps = 15/139 (10%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A+VTG T G+G      L++    +  +GRNP+ L  +++    +  ++     +V    
Sbjct: 8   AVVTGATGGMGIEIVKDLSRDH-IVYALGRNPEHLAALAEIEGVEPIESD----IVK--- 59

Query: 116 DLDEGVERIKEAIEGLD-VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
             +   E   + ++ LD V  L++   ++                  + +NV    ++++
Sbjct: 60  --EVLEEGGVDKLKNLDHVDTLVHAAAVARD--TTIEAGSVAEWHAHLDLNVIVPAELSR 115

Query: 175 AVLPGMLKRKKGLSMLNIG 193
            +LP + +   G  ++ I 
Sbjct: 116 QLLPAL-RAASGC-VIYIN 132

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} Length = 246

 Score = 74.0 bits (183), Expect = 2e-16
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 24/148 (16%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           ALVTG + GIG++ A  LAK G N+V+    N  K  +V D I+     +   +V  D +
Sbjct: 7   ALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKK--LGSDAIAVRADVA 64

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVN 165
              D+   V++  +    +D  +L+NN G++    +     D +L++        +I  N
Sbjct: 65  NAEDVTNMVKQTVDVFGQVD--ILVNNAGVT----K-----DNLLMRMKEEEWDTVINTN 113

Query: 166 VEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           ++G    T+AV   M++++ G  ++NI 
Sbjct: 114 LKGVFLCTKAVSRFMMRQRHG-RIVNIA 140

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} PDB: 3sj7_A* Length = 246

 Score = 74.1 bits (183), Expect = 2e-16
 Identities = 39/148 (26%), Positives = 74/148 (50%), Gaps = 24/148 (16%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           ALVTG + GIG+S A QLA+ G N+ +    + +K + V + I+A        ++  + +
Sbjct: 7   ALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKA--KGVDSFAIQANVA 64

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVN 165
              ++   ++ +      LD  VL+NN GI+    R     D +L++       ++I  N
Sbjct: 65  DADEVKAMIKEVVSQFGSLD--VLVNNAGIT----R-----DNLLMRMKEQEWDDVIDTN 113

Query: 166 VEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           ++G     Q   P ML+++ G +++N+ 
Sbjct: 114 LKGVFNCIQKATPQMLRQRSG-AIINLS 140

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G Length = 244

 Score = 73.3 bits (181), Expect = 3e-16
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 24/148 (16%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
            +VTG + GIGK+ A  L K G  +++   R+    ++VS  I+A     Q  +   D S
Sbjct: 4   VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEA--YGGQAITFGGDVS 61

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVN 165
              D++  ++   +A   +D  V++NN GI     R     D +L++        +I +N
Sbjct: 62  KEADVEAMMKTAIDAWGTID--VVVNNAGI----TR-----DTLLIRMKKSQWDEVIDLN 110

Query: 166 VEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           + G    TQA    M+K++KG  ++NI 
Sbjct: 111 LTGVFLCTQAATKIMMKKRKG-RIINIA 137

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* Length = 269

 Score = 73.8 bits (182), Expect = 3e-16
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 24/148 (16%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           ALVTG + GIG++ A +LA  G  + +    +     +V  +I A  A  +  +V  D S
Sbjct: 31  ALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAA--AGGEAFAVKADVS 88

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVN 165
              +++     + E    LD  VL+NN GI     R     D +LL+       +++ +N
Sbjct: 89  QESEVEALFAAVIERWGRLD--VLVNNAGI----TR-----DTLLLRMKRDDWQSVLDLN 137

Query: 166 VEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           + G    ++A    MLK++ G  ++NI 
Sbjct: 138 LGGVFLCSRAAAKIMLKQRSG-RIINIA 164

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Length = 267

 Score = 73.7 bits (182), Expect = 3e-16
 Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 25/150 (16%)

Query: 56  ALVTGPTD--GIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
            +VTG +   G+G   A   A+ G  + +         ++    ++  Y   + K+    
Sbjct: 23  VVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTY-GIKAKAYKCQ 81

Query: 113 FS--GDLDEGVERIKEAIEGLDVGVLINNVGIS-------YPYARFFHEVDQVLLKNLIK 163
                  ++ V+ +      +D    I N G +            +    + V     ++
Sbjct: 82  VDSYESCEKLVKDVVADFGQIDA--FIANAGATADSGILDGSVEAW----NHV-----VQ 130

Query: 164 VNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           V++ GT    +AV     +R  G S++   
Sbjct: 131 VDLNGTFHCAKAVGHHFKERGTG-SLVITA 159

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Length = 254

 Score = 73.4 bits (181), Expect = 4e-16
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 24/150 (16%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A+VT      G   A +L++ G  +     +  +  ++       +A+T  +   +    
Sbjct: 4   AIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDEL-----EAFAETYPQLKPMSEQ- 57

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGI---SYPYARFFHEV-DQVLLKNLIKVNVEGTTK 171
           +  E +E +  A   +D  VL++N        P  ++  E          ++        
Sbjct: 58  EPAELIEAVTSAYGQVD--VLVSNDIFAPEFQPIDKYAVEDYRGA-----VEALQIRPFA 110

Query: 172 VTQAVLPGMLKRKKGLSMLNIGKAELMCSV 201
           +  AV   M KRK G  ++ I       S 
Sbjct: 111 LVNAVASQMKKRKSG-HIIFI------TSA 133

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Length = 261

 Score = 72.9 bits (180), Expect = 6e-16
 Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 10/139 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           AL+TG   G G+  A + AK G  +V+V R+    + V+  I          +V  D S 
Sbjct: 12  ALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDA-----ALAVAADISK 66

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             D+D  VE        +D  +L+NN GI +   +    V+      ++ VNV G   +T
Sbjct: 67  EADVDAAVEAALSKFGKVD--ILVNNAGIGHK-PQNAELVEPEEFDRIVGVNVRGVYLMT 123

Query: 174 QAVLPGMLKRKKGLSMLNI 192
             ++P   +         I
Sbjct: 124 SKLIPHFKENGAKGQECVI 142

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Length = 346

 Score = 73.7 bits (181), Expect = 7e-16
 Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 16/147 (10%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKS------- 108
             +TG + GIGK+ A + AK G N+V+  +       +  +I    A  +I++       
Sbjct: 48  VFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYT--AAEEIEAVGGKALP 105

Query: 109 VVVD--FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNV 166
            +VD      +   VE+  +   G+D  +L+NN            +     L  ++ VN 
Sbjct: 106 CIVDVRDEQQISAAVEKAIKKFGGID--ILVNNASAISL--TNTLDTPTKRLDLMMNVNT 161

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
            GT   ++A +P + K K    +LNI 
Sbjct: 162 RGTYLASKACIPYLKKSKVA-HILNIS 187

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} Length = 280

 Score = 73.0 bits (180), Expect = 8e-16
 Identities = 29/139 (20%), Positives = 52/139 (37%), Gaps = 8/139 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A+VTG + GIG++ A   A+ G  +V+  RN + L +++D I       +  ++  D   
Sbjct: 11  AIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAG--GGGEAAALAGDVGD 68

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
               +  VE       GLD     NN G           +     +  +  N+       
Sbjct: 69  EALHEALVELAVRRFGGLD--TAFNNAGALGAMGE-ISSLSVEGWRETLDTNLTSAFLAA 125

Query: 174 QAVLPGMLKRKKGLSMLNI 192
           +  +P +     G S+   
Sbjct: 126 KYQVPAIAALGGG-SLTFT 143

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 269

 Score = 72.6 bits (179), Expect = 8e-16
 Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 24/148 (16%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           A VTG   G+G + + +L   G+ + +      D +       +   A    K+  VD +
Sbjct: 28  AFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERD--AGRDFKAYAVDVA 85

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVN 165
                +   E++      +D  VLINN GI+    R     D   +K        +++ +
Sbjct: 86  DFESCERCAEKVLADFGKVD--VLINNAGIT----R-----DATFMKMTKGDWDAVMRTD 134

Query: 166 VEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           ++    VT+  + GM++R+ G  ++NIG
Sbjct: 135 LDAMFNVTKQFIAGMVERRFG-RIVNIG 161

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} Length = 260

 Score = 72.2 bits (178), Expect = 9e-16
 Identities = 34/145 (23%), Positives = 51/145 (35%), Gaps = 28/145 (19%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            ++TG + GIG             +V   R+               A   I +V  D S 
Sbjct: 31  VVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPS-----------ADPDIHTVAGDISK 79

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEV-----DQVLLKNLIKVNVEG 168
               D  V    E    +D   L+NN G+     + F E+     D       + VNV G
Sbjct: 80  PETADRIVREGIERFGRID--SLVNNAGVFLA--KPFVEMTQEDYDHN-----LGVNVAG 130

Query: 169 TTKVTQAVLPGMLKRKKGLSMLNIG 193
              +TQ     MLK+  G  +++I 
Sbjct: 131 FFHITQRAAAEMLKQGSG-HIVSIT 154

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Length = 266

 Score = 72.6 bits (179), Expect = 1e-15
 Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 14/143 (9%)

Query: 56  ALVTGPTD-GIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
            LVT     GIG + A +    G ++V+   +  +L +  D +       ++++VV D +
Sbjct: 25  VLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADL-GLGRVEAVVCDVT 83

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARFFHEV-DQVLLKNLIKVNVEGT 169
               +D  + +  E    LD  VL+NN G+    P      E  D+V     + V +   
Sbjct: 84  STEAVDALITQTVEKAGRLD--VLVNNAGLGGQTPVVDMTDEEWDRV-----LNVTLTSV 136

Query: 170 TKVTQAVLPGMLKRKKGLSMLNI 192
            + T+A L        G  ++N 
Sbjct: 137 MRATRAALRYFRGVDHGGVIVNN 159

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Length = 256

 Score = 72.2 bits (178), Expect = 1e-15
 Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 24/148 (16%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           A VTG   GIG S   +L K G  +V   G N  +     +  +A        +   +  
Sbjct: 16  AYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKA--LGFDFYASEGNVG 73

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVN 165
                 +  +++K  +  +D  VL+NN GI+    R     D V  K        +I  N
Sbjct: 74  DWDSTKQAFDKVKAEVGEID--VLVNNAGIT----R-----DVVFRKMTREDWQAVIDTN 122

Query: 166 VEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           +     VT+ V+ GM++R  G  ++NI 
Sbjct: 123 LTSLFNVTKQVIDGMVERGWG-RIINIS 149

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A Length = 255

 Score = 71.4 bits (176), Expect = 2e-15
 Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 18/142 (12%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A+V G T G+G +   +L + G  ++L GRN   +  + +    +     + ++  D + 
Sbjct: 11  AIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPR-----VHALRSDIAD 65

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARF--FHEVDQVLLKNLIKVNVEGTTK 171
             ++        + +  +D  +L  N G+    +    F +V +        VN +G   
Sbjct: 66  LNEIAVLGAAAGQTLGAID--LLHINAGV----SELEPFDQVSEASYDRQFAVNTKGAFF 119

Query: 172 VTQAVLPGMLKRKKGLSMLNIG 193
             Q + P +   ++G S++   
Sbjct: 120 TVQRLTPLI---REGGSIVFTS 138

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Length = 251

 Score = 71.4 bits (176), Expect = 2e-15
 Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 5/137 (3%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A++TG T GIG + A +  + G  +++ GR+ D  +  + S+         +    D   
Sbjct: 9   AIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD-ED 67

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
              +  +  ++A   +    L+NN GI+    +   E      + L+ VN++G    T+ 
Sbjct: 68  GWTKLFDATEKAFGPVS--TLVNNAGIAVN--KSVEETTTAEWRKLLAVNLDGVFFGTRL 123

Query: 176 VLPGMLKRKKGLSMLNI 192
            +  M  +  G S++N+
Sbjct: 124 GIQRMKNKGLGASIINM 140

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Length = 249

 Score = 71.4 bits (176), Expect = 2e-15
 Identities = 33/143 (23%), Positives = 67/143 (46%), Gaps = 19/143 (13%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A++TG  +GIG++ A + A  G ++ +    P    +   +I+      ++ +V  D S 
Sbjct: 10  AVITGGANGIGRAIAERFAVEGADIAIADLVPA--PEAEAAIRN--LGRRVLTVKCDVSQ 65

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFH----EVDQVLLKNLIKVNVEGT 169
            GD++   +++       D  +L+NN GI YP   F      +  +       ++NV+  
Sbjct: 66  PGDVEAFGKQVISTFGRCD--ILVNNAGI-YPLIPFDELTFEQWKKT-----FEINVDSG 117

Query: 170 TKVTQAVLPGMLKRKKGLSMLNI 192
             + +A +PGM +   G  ++N+
Sbjct: 118 FLMAKAFVPGMKRNGWG-RIINL 139

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} Length = 244

 Score = 71.0 bits (175), Expect = 2e-15
 Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 22/145 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           ALVT      G +    L + G  +V    +  D  +      +            +   
Sbjct: 4   ALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTI------ALAEQ 57

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARF-FHEV-----DQVLLKNLIKVNVEG 168
              +  V+   +  E +D   +++N  I  P  R            Q+      +     
Sbjct: 58  -KPERLVDATLQHGEAID--TIVSNDYIPRPMNRLPLEGTSEADIRQM-----FEALSIF 109

Query: 169 TTKVTQAVLPGMLKRKKGLSMLNIG 193
              + Q+ +  +       S++ I 
Sbjct: 110 PILLLQSAIAPLRAAGGA-SVIFIT 133

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281

 Score = 71.1 bits (175), Expect = 3e-15
 Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 13/141 (9%)

Query: 55  WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           W LVTG + G G++ A      G  ++   R  + L D    + A Y   + +++ +D +
Sbjct: 8   W-LVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDD----LVAAYP-DRAEAISLDVT 61

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
               +D     +      +D  VL+NN G        F E  +  L++L +++V G  ++
Sbjct: 62  DGERIDVVAADVLARYGRVD--VLVNNAG--RTQVGAFEETTERELRDLFELHVFGPARL 117

Query: 173 TQAVLPGMLKRKKGLSMLNIG 193
           T+A+LP M +R  G  ++NI 
Sbjct: 118 TRALLPQMRERGSGS-VVNIS 137

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280

 Score = 70.7 bits (174), Expect = 5e-15
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 17/147 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQ-IKSVVVDF 113
           A+VTG   GIG   A  LA +G ++ + G  + + +  V   +    A+   +++ + D 
Sbjct: 32  AIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADL 91

Query: 114 SGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEV-----DQVLLKNLIKVNVEG 168
           S      V+ +      +D   L+NN GI+      F ++     D +     + VN+ G
Sbjct: 92  S-SHQATVDAVVAEFGRID--CLVNNAGIASIVRDDFLDLKPENFDTI-----VGVNLRG 143

Query: 169 TTKVTQAVLPGMLKRKKGLS--MLNIG 193
           T   TQAVL  ML      S  ++NI 
Sbjct: 144 TVFFTQAVLKAMLASDARASRSIINIT 170

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301

 Score = 70.5 bits (173), Expect = 6e-15
 Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 8/139 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A+VTG   GIG + A + A+ G  LVL   +   L+   + ++ +        VV D   
Sbjct: 34  AVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGF--DAHGVVCDVRH 91

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             ++    +     + G+D  V+ +N GI    A    +++    + +I +++ G+    
Sbjct: 92  LDEMVRLADEAFRLLGGVD--VVFSNAGIV--VAGPLAQMNHDDWRWVIDIDLWGSIHAV 147

Query: 174 QAVLPGMLKRKKGLSMLNI 192
           +A LP +L++  G  +   
Sbjct: 148 EAFLPRLLEQGTGGHIAFT 166

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324

 Score = 70.9 bits (174), Expect = 6e-15
 Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 10/143 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKT---QIKSVVVD 112
            L+TG + G G+  A  LA  G  +    R+       +    A +A+     ++++ +D
Sbjct: 8   ILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELD 67

Query: 113 FS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
                 +D  +++I      +DV  LI+N G  +                L  +NV  T 
Sbjct: 68  VQSQVSVDRAIDQIIGEDGRIDV--LIHNAG--HMVFGPAEAFTPEQFAELYDINVLSTQ 123

Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
           +V +A LP M ++K GL ++ I 
Sbjct: 124 RVNRAALPHMRRQKHGL-LIWIS 145

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Length = 277

 Score = 70.3 bits (173), Expect = 7e-15
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 12/140 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            +VTG   GIG++ A   AK G  +V+   N D    V++ I +K        V VD S 
Sbjct: 30  CIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSK-----AFGVRVDVSS 84

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             D +  VE+       +D  VL+NN G           + +     ++ VNV+G    +
Sbjct: 85  AKDAESMVEKTTAKWGRVD--VLVNNAGFGTT--GNVVTIPEETWDRIMSVNVKGIFLCS 140

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           + V+P M +   G S++N  
Sbjct: 141 KYVIPVMRRNGGG-SIINTT 159

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* Length = 258

 Score = 69.8 bits (172), Expect = 8e-15
 Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 22/146 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           ALVTG + G+GK+ A +LA+ G N+V+   R+     + ++ I+    K     V  +  
Sbjct: 7   ALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKV--LVVKANVG 64

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARF----FHEVDQVLLKNLIKVNV 166
               + E  ++I E    LD  V +NN       P        +           + +N 
Sbjct: 65  QPAKIKEMFQQIDETFGRLD--VFVNNAASGVLRPVMELEETHWDWT--------MNINA 114

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNI 192
           +      Q     M K   G  +++I
Sbjct: 115 KALLFCAQEAAKLMEKNGGG-HIVSI 139

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} Length = 271

 Score = 69.9 bits (172), Expect = 8e-15
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 14/142 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI--QAKYAKTQIKSVVVDF 113
           A++TG   GIG   +  LA+ G  +VL       L   + S+   A +        VVD 
Sbjct: 14  AIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVH-------HVVDL 66

Query: 114 S--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           +    +   ++   +    LD+  + NN   S P      ++   +  +   VN  GT  
Sbjct: 67  TNEVSVRALIDFTIDTFGRLDI--VDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTML 124

Query: 172 VTQAVLPGMLKRKKGLSMLNIG 193
           + +  +P ++    G +++NI 
Sbjct: 125 MCKYAIPRLISAGGG-AIVNIS 145

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} Length = 285

 Score = 69.6 bits (171), Expect = 1e-14
 Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 30/154 (19%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKS------- 108
             ++G + GIG + A ++A  G N+ LV ++ +    +  +I    A  +I+        
Sbjct: 12  MFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYT--AAKEIEEAGGQALP 69

Query: 109 VVVD--FSGDLDEGVERIKEAIEGLDVGVLINNVGI-------SYPYARFFHEVDQVLLK 159
           +V D      +   V +  E   G+D  + +NN            P  RF    D +   
Sbjct: 70  IVGDIRDGDAVAAAVAKTVEQFGGID--ICVNNASAINLGSIEEVPLKRF----DLM--- 120

Query: 160 NLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
               + V GT  V+Q+ +P M  R     +L + 
Sbjct: 121 --NGIQVRGTYAVSQSCIPHMKGRDNP-HILTLS 151

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Length = 250

 Score = 69.0 bits (170), Expect = 1e-14
 Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 7/141 (4%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A+VTG + G G + A +    G  +  +  + + L++ + +    YA  ++  V  D + 
Sbjct: 5   AIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYA-DKVLRVRADVAD 63

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYAR-FFHEVDQVLLKNLIKVNVEGTTKV 172
            GD++  +    E    +D  VL+NN GI+        H         ++ VNV G    
Sbjct: 64  EGDVNAAIAATMEQFGAID--VLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLG 121

Query: 173 TQAVLPGMLKRKKGLSMLNIG 193
            +AVLP ML +  G  ++NI 
Sbjct: 122 CRAVLPHMLLQGAG-VIVNIA 141

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* Length = 261

 Score = 69.5 bits (171), Expect = 1e-14
 Identities = 32/145 (22%), Positives = 64/145 (44%), Gaps = 19/145 (13%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
            ++TG + G+GKS A + A     +V+  R   D+   V + I+      +  +V  D +
Sbjct: 10  VVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKK--VGGEAIAVKGDVT 67

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEV-----DQVLLKNLIKVNVE 167
              D+   V+   +    LD  V+INN G+  P +   HE+     ++V     I  N+ 
Sbjct: 68  VESDVINLVQSAIKEFGKLD--VMINNAGLENPVS--SHEMSLSDWNKV-----IDTNLT 118

Query: 168 GTTKVTQAVLPGMLKRKKGLSMLNI 192
           G    ++  +   ++     +++N+
Sbjct: 119 GAFLGSREAIKYFVENDIKGTVINM 143

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273

 Score = 69.5 bits (171), Expect = 1e-14
 Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 14/140 (10%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A++TG T GIG + A +    G  + + GR  D L      I           +  D + 
Sbjct: 32  AVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGG-----AVGIQADSAN 86

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             +LD   E++K     +D  VL  N G          EV +    +    NV+G     
Sbjct: 87  LAELDRLYEKVKAEAGRID--VLFVNAGG-GSMLP-LGEVTEEQYDDTFDRNVKGVLFTV 142

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           Q  LP +    +G S++  G
Sbjct: 143 QKALPLL---ARGSSVVLTG 159

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Length = 276

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 11/129 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAK-TGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           ALVTG   GIG +    L +    ++VL  R+  + +     +QA+      +   +D  
Sbjct: 7   ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLS--PRFHQLDID 64

Query: 115 GDLD---EGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
            DL       + +++   GLD  VL+NN GI++  A        +  +  +K N  GT  
Sbjct: 65  -DLQSIRALRDFLRKEYGGLD--VLVNNAGIAFKVAD--PTPFHIQAEVTMKTNFFGTRD 119

Query: 172 VTQAVLPGM 180
           V   +LP +
Sbjct: 120 VCTELLPLI 128

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} Length = 264

 Score = 69.1 bits (170), Expect = 1e-14
 Identities = 31/148 (20%), Positives = 62/148 (41%), Gaps = 22/148 (14%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           AL+T  T G+GK    +L   G ++ +    +   ++ + ++ +    + +++ V  D +
Sbjct: 10  ALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKD--VEERLQFVQADVT 67

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVN 165
              DL + VE        +D   LINN G             + L+         +I+ N
Sbjct: 68  KKEDLHKIVEEAMSHFGKID--FLINNAG--PYVFE-----RKKLVDYEEDEWNEMIQGN 118

Query: 166 VEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           +     + + V+P M K+  G  ++N G
Sbjct: 119 LTAVFHLLKLVVPVMRKQNFG-RIINYG 145

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} Length = 266

 Score = 69.1 bits (170), Expect = 2e-14
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 30/145 (20%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK-------DVSDSIQAKYAKTQIKS 108
           ALVTG   GIG +    L   G  + +  R    +        D+ +             
Sbjct: 31  ALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADLHLPGDLRE------------- 77

Query: 109 VVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEG 168
                +   D     +   +  LD  +++NN G+         E         + VNVE 
Sbjct: 78  -----AAYADGLPGAVAAGLGRLD--IVVNNAGVISR--GRITETTDADWSLSLGVNVEA 128

Query: 169 TTKVTQAVLPGMLKRKKGLSMLNIG 193
             ++ +A +P M     G +++N+ 
Sbjct: 129 PFRICRAAIPLMAAAGGG-AIVNVA 152

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} Length = 269

 Score = 69.1 bits (170), Expect = 2e-14
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 19/140 (13%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A+VTG + GIG +    L + G  +V V  +     +VSD  +             D + 
Sbjct: 17  AIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKI------------DVTN 64

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             ++ E VE+  +    +D  +L+NN GI        H     + + +I VNV G+  + 
Sbjct: 65  EEEVKEAVEKTTKKYGRID--ILVNNAGIEQY--SPLHLTPTEIWRRIIDVNVNGSYLMA 120

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           +  +P ML    G S++NI 
Sbjct: 121 KYTIPVMLAIGHG-SIINIA 139

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267

 Score = 68.5 bits (168), Expect = 2e-14
 Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 9/135 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKT---GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
            L+TG   G+G      L        +L    RN ++ K++ D +   ++   I  + + 
Sbjct: 24  ILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED-LAKNHSNIHILEIDLR 82

Query: 113 FSGDLDEGVERIKEA--IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
                D+ V  I+     +GL+V  L NN GI+   AR    V    L + ++ N     
Sbjct: 83  NFDAYDKLVADIEGVTKDQGLNV--LFNNAGIAPKSAR-ITAVRSQELLDTLQTNTVVPI 139

Query: 171 KVTQAVLPGMLKRKK 185
            + +A LP + K  K
Sbjct: 140 MLAKACLPLLKKAAK 154

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* Length = 281

 Score = 68.0 bits (167), Expect = 4e-14
 Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 14/143 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           AL+TG   G+G++   +    G  + ++ ++ ++L+++  +            VV D   
Sbjct: 8   ALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGN-----AVGVVGDVRS 62

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKN---LIKVNVEGTT 170
             D     ER   A   +D   LI N GI           +  +      +  VNV+G  
Sbjct: 63  LQDQKRAAERCLAAFGKID--TLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYI 120

Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
              +A LP ++   +G S++   
Sbjct: 121 HAVKACLPALVSS-RG-SVVFTI 141

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250

 Score = 67.4 bits (165), Expect = 5e-14
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 10/134 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVG--RNPDKLKDVSDSIQAKYAKTQIKSVVVDF 113
            +VTG   GIG     QL K      ++   R+ +K  ++          +++  + +  
Sbjct: 6   VVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATEL-----KSIKDSRVHVLPLTV 60

Query: 114 S--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           +    LD  V ++ E +    + +LINN G+   Y     E ++ ++   + VN      
Sbjct: 61  TCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNT-EPNRAVIAEQLDVNTTSVVL 119

Query: 172 VTQAVLPGMLKRKK 185
           +TQ +LP +     
Sbjct: 120 LTQKLLPLLKNAAS 133

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251

 Score = 67.3 bits (165), Expect = 6e-14
 Identities = 16/144 (11%), Positives = 34/144 (23%), Gaps = 30/144 (20%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK------DVSDSIQAKYAKTQIKSV 109
            LV G +  +G            N + +    +           S   + K         
Sbjct: 25  ILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSV------- 77

Query: 110 VVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
                      +E+I      +D    +   G          +     +K +I +N+   
Sbjct: 78  -----------IEKINSKSIKVD--TFVCAAGGWSGGNA-SSDEFLKSVKGMIDMNLYSA 123

Query: 170 TKVTQAVLPGMLKRKKGLSMLNIG 193
                     +    +G   +  G
Sbjct: 124 FASAHIGAKLL---NQGGLFVLTG 144

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Length = 274

 Score = 67.6 bits (166), Expect = 7e-14
 Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 30/154 (19%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-------PDKLKDVSDSIQAKYAKTQIKS 108
             +TG + GIG + A + A+ G N+ +  ++       P  +   + ++ A  A  Q  +
Sbjct: 9   LFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNA--AGGQGLA 66

Query: 109 VVVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGISY-------PYARFFHEVDQVLLK 159
           +  D      +   V    +   G+D  +L+NN    +       P  RF    D +   
Sbjct: 67  LKCDIREEDQVRAAVAATVDTFGGID--ILVNNASAIWLRGTLDTPMKRF----DLM--- 117

Query: 160 NLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
              +VN  G+    QA LP +L+      +L + 
Sbjct: 118 --QQVNARGSFVCAQACLPHLLQAPNP-HILTLA 148

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Length = 247

 Score = 67.2 bits (165), Expect = 7e-14
 Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 34/147 (23%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            LVTG   GIG + A +LA  G  + +  R                A   +  V VD + 
Sbjct: 18  VLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG-------------APKGLFGVEVDVTD 64

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNV 166
              +D     ++E    ++  VL++N G+S          D  L++        +I  N+
Sbjct: 65  SDAVDRAFTAVEEHQGPVE--VLVSNAGLS----A-----DAFLMRMTEEKFEKVINANL 113

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
            G  +V Q     M + K G  M+ IG
Sbjct: 114 TGAFRVAQRASRSMQRNKFG-RMIFIG 139

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Length = 256

 Score = 67.1 bits (165), Expect = 8e-14
 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 25/145 (17%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            LVTG   GIG++ A   A+ G  + L    P+  K+V+++I   +         VD   
Sbjct: 9   VLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGGAF-------FQVDLED 60

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEV-----DQVLLKNLIKVNVEG 168
             +    VE    A+  +D  VL+NN  I+ P       V      +V     ++VN+  
Sbjct: 61  ERERVRFVEEAAYALGRVD--VLVNNAAIAAP--GSALTVRLPEWRRV-----LEVNLTA 111

Query: 169 TTKVTQAVLPGMLKRKKGLSMLNIG 193
              ++      M K   G +++N+ 
Sbjct: 112 PMHLSALAAREMRKVGGG-AIVNVA 135

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} Length = 253

 Score = 66.8 bits (164), Expect = 8e-14
 Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 34/147 (23%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            LVTG   GIG + A   A  G  + +  R+ +                   +V  D + 
Sbjct: 24  VLVTGGNRGIGLAIARAFADAGDKVAITYRSGE-------------PPEGFLAVKCDITD 70

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNV 166
              +++  + I+E    ++  VLI N G++    +     DQ+L++       ++++ N+
Sbjct: 71  TEQVEQAYKEIEETHGPVE--VLIANAGVT----K-----DQLLMRMSEEDFTSVVETNL 119

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
            GT +V +     ML+ KKG  ++ I 
Sbjct: 120 TGTFRVVKRANRAMLRAKKG-RVVLIS 145

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Length = 258

 Score = 66.4 bits (163), Expect = 1e-13
 Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 16/138 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
            L+TG + GIG + A   A+ G  + L GR  P  + +   S++A            D +
Sbjct: 10  VLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRA--DGGDAAFFAADLA 67

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFF----HEVDQVLLKNLIKVNVEG 168
                 + V+       G+D  VLINN G                D V     +  N+  
Sbjct: 68  TSEACQQLVDEFVAKFGGID--VLINNAGGLVGRKPLPEIDDTFYDAV-----MDANIRS 120

Query: 169 TTKVTQAVLPGMLKRKKG 186
               T+  LP +    K 
Sbjct: 121 VVMTTKFALPHLAAAAKA 138

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Length = 263

 Score = 66.4 bits (163), Expect = 2e-13
 Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 28/146 (19%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            LVTG   GIG++     A+ G +LV V R    L +          + +  +VV D S 
Sbjct: 9   ILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA-----VAALEAEAIAVVADVSD 63

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNV 166
              ++       E    L    + +  G+    A        +           +++VN+
Sbjct: 64  PKAVEAVFAEALEEFGRLH--GVAHFAGV----AH-----SALSWNLPLEAWEKVLRVNL 112

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNI 192
            G+  V +     +   + G S++  
Sbjct: 113 TGSFLVARKAGEVL--EEGG-SLVLT 135

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Length = 277

 Score = 66.0 bits (162), Expect = 2e-13
 Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 16/141 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI--QAKYAKTQIKSVVVDF 113
           A+VTG   GIG + A +LA  G +++    + D     +  I   A           VD 
Sbjct: 32  AIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAA-------CRVDV 84

Query: 114 S--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           S    +   V+    A  G+D   L+ N G+ +       +        +I +N+ G   
Sbjct: 85  SDEQQIIAMVDACVAAFGGVD--KLVANAGVVHL--ASLIDTTVEDFDRVIAINLRGAWL 140

Query: 172 VTQAVLPGMLKRKKGLSMLNI 192
            T+   P M++R  G +++N+
Sbjct: 141 CTKHAAPRMIERGGG-AIVNL 160

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A Length = 454

 Score = 66.5 bits (163), Expect = 3e-13
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 24/140 (17%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A+VTG   GIG + A   A+ G  +V +  +        + ++    K    ++ +D + 
Sbjct: 216 AVVTGAARGIGATIAEVFARDGATVVAIDVDGAA-----EDLKRVADKVGGTALTLDVT- 269

Query: 116 DLDEGVERIKEAIE--GLDVGVLINNVGISYPYARFFHEVDQVLLK-------NLIKVNV 166
             D   +      E  G  V +L+NN GI+    R     D++L          +I VN+
Sbjct: 270 ADDAVDKITAHVTEHHGGKVDILVNNAGIT----R-----DKLLANMDEKRWDAVIAVNL 320

Query: 167 EGTTKVTQAVLPGMLKRKKG 186
               ++T+ ++      + G
Sbjct: 321 LAPQRLTEGLVGNGTIGEGG 340

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Length = 278

 Score = 65.6 bits (161), Expect = 3e-13
 Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 12/142 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A++TG   GIG++ A    + G  +V+     D  + V ++I +    + +   V     
Sbjct: 19  AIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK--- 75

Query: 116 DLDEGVER-IKEAIE---GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
             DE V   +   I     LD+  +  NVG+         E      K ++ +NV G   
Sbjct: 76  --DEDVRNLVDTTIAKHGKLDI--MFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFL 131

Query: 172 VTQAVLPGMLKRKKGLSMLNIG 193
           V +     M+  KKG S++   
Sbjct: 132 VAKHAARVMIPAKKG-SIVFTA 152

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... Length = 327

 Score = 65.9 bits (161), Expect = 4e-13
 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 56  ALVTGPTDGIGKSFAFQLAKT---GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
            L+TG + GIG   A +LA        +    R+      + ++ +A          +  
Sbjct: 5   VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQ- 63

Query: 113 FSGDLD----EGVER-IKEAIEG-LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNV 166
               LD    + V    +   EG +DV  L+ N G+          + +  + +++ VNV
Sbjct: 64  ----LDVRDSKSVAAARERVTEGRVDV--LVCNAGLGLLGP--LEALGEDAVASVLDVNV 115

Query: 167 EGTTKVTQAVLPGMLKRKKG 186
            GT ++ QA LP M +R  G
Sbjct: 116 VGTVRMLQAFLPDMKRRGSG 135

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311

 Score = 65.7 bits (160), Expect = 4e-13
 Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 34/162 (20%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A+VTG   GIG     QL+  G+ +VL  R+  K  +  + ++    +  +    +D + 
Sbjct: 15  AVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHE-NVVFHQLDVTD 73

Query: 116 DLD---EGVERIKEAIEGLDVGVLINNVGISYP--------------------------- 145
            +       + IK     LD  +L+NN G++                             
Sbjct: 74  PIATMSSLADFIKTHFGKLD--ILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEK 131

Query: 146 -YARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKG 186
             A+        L +  +K+N  G   VT+ ++P +      
Sbjct: 132 PEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSP 173

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Length = 270

 Score = 65.3 bits (160), Expect = 4e-13
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 13/140 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            +VTG   GIG         +G  +V+  ++    + +   +           ++ D + 
Sbjct: 12  VVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVF------ILCDVTQ 65

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             D+   V         LD   ++NN G   P  R   E      + L+++N+ GT  +T
Sbjct: 66  EDDVKTLVSETIRRFGRLD--CVVNNAGHHPPPQR-PEETSAQGFRQLLELNLLGTYTLT 122

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           +  LP +  RK   +++NI 
Sbjct: 123 KLALPYL--RKSQGNVINIS 140

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Length = 264

 Score = 64.5 bits (158), Expect = 6e-13
 Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 30/145 (20%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK-------DVSDSIQAKYAKTQIKS 108
            +VTG + GIG++ A +    G  ++ +  +            DV++  Q K +   I  
Sbjct: 11  VIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKAS---IDH 67

Query: 109 VVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEG 168
           +  ++ G +                 VL+NN GI          +     + +I VN+ G
Sbjct: 68  IFKEY-GSIS----------------VLVNNAGIESYGK--IESMSMGEWRRIIDVNLFG 108

Query: 169 TTKVTQAVLPGMLKRKKGLSMLNIG 193
               ++  +P M++ +   S++NI 
Sbjct: 109 YYYASKFAIPYMIRSRDP-SIVNIS 132

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} Length = 250

 Score = 64.5 bits (158), Expect = 6e-13
 Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 45/153 (29%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK--------DVSDSIQAKYAKTQIK 107
             VTG   GIG + A    + G  +    +   + +        DV+D+ Q         
Sbjct: 10  VWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFATEVMDVADAAQV-------- 61

Query: 108 SVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK-------N 160
                      +  +R+    E LD   L+N  GI                +        
Sbjct: 62  ----------AQVCQRLLAETERLD--ALVNAAGIL---------RMGATDQLSKEDWQQ 100

Query: 161 LIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
              VNV G   + Q  +    +++ G +++ + 
Sbjct: 101 TFAVNVGGAFNLFQQTMNQFRRQRGG-AIVTVA 132

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Length = 254

 Score = 64.4 bits (158), Expect = 6e-13
 Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 12/139 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI--QAKYAKTQIKSVVVDF 113
            ++TG   G+G   A Q    G  +VL     ++    +  +   A+Y        V   
Sbjct: 8   VIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLD----VTIE 63

Query: 114 SGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             D    V   +E    +D   L+NN GIS     F         + ++++N+ G     
Sbjct: 64  E-DWQRVVAYAREEFGSVD--GLVNNAGISTG--MFLETESVERFRKVVEINLTGVFIGM 118

Query: 174 QAVLPGMLKRKKGLSMLNI 192
           + V+P M     G S++NI
Sbjct: 119 KTVIPAMKDAGGG-SIVNI 136

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} Length = 317

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 34/159 (21%), Positives = 69/159 (43%), Gaps = 34/159 (21%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV------------GRNPDKLKDVSDSIQAKYAK 103
           A +TG   G G++ A +LA+ G ++V +              +P++LK+    ++ +  +
Sbjct: 49  AFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRR 108

Query: 104 TQIKSVVVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARF-------FHEVD 154
             I +   D      L   V+        +D+  L++NVGIS             + ++ 
Sbjct: 109 --IIARQADVRDLASLQAVVDEALAEFGHIDI--LVSNVGIS-NQGEVVSLTDQQWSDI- 162

Query: 155 QVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
                  ++ N+ G     +AVLP M++R +G S++ + 
Sbjct: 163 -------LQTNLIGAWHACRAVLPSMIERGQGGSVIFVS 194

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} Length = 299

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 31/152 (20%), Positives = 64/152 (42%), Gaps = 19/152 (12%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV------------GRNPDKLKDVSDSIQAKYAK 103
           A +TG   G G+S A  LA+ G +++ +               PD L +    ++A    
Sbjct: 31  AFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEA--LG 88

Query: 104 TQIKSVVVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNL 161
            +I +  VD      +   V+     +  LD+  ++ N  ++    R  + +D    +++
Sbjct: 89  RRIIASQVDVRDFDAMQAAVDDGVTQLGRLDI--VLANAALASEGTRL-NRMDPKTWRDM 145

Query: 162 IKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           I VN+ G     +  +P ++  K+G S++   
Sbjct: 146 IDVNLNGAWITARVAIPHIMAGKRGGSIVFTS 177

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Length = 260

 Score = 62.5 bits (153), Expect = 3e-12
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 16/141 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI--QAKYAKTQIKSVVVDF 113
           ALV+G   G+G S    +   G  +V      ++ K ++  +   A+Y       V +D 
Sbjct: 10  ALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARY-------VHLDV 62

Query: 114 S--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           +        V+    A  GL   VL+NN GI         +      + ++ VN+ G   
Sbjct: 63  TQPAQWKAAVDTAVTAFGGLH--VLVNNAGILNI--GTIEDYALTEWQRILDVNLTGVFL 118

Query: 172 VTQAVLPGMLKRKKGLSMLNI 192
             +AV+  M +  +G S++NI
Sbjct: 119 GIRAVVKPMKEAGRG-SIINI 138

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Length = 260

 Score = 62.6 bits (153), Expect = 3e-12
 Identities = 20/139 (14%), Positives = 47/139 (33%), Gaps = 15/139 (10%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            L+TG +  +G   A +L + G  +++  R           ++   A      +  DFS 
Sbjct: 30  ILITGASQRVGLHCALRLLEHGHRVIISYRTEH---ASVTELRQAGAVA----LYGDFSC 82

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              +   ++ +K     L    +++N            E D      +  V++     + 
Sbjct: 83  ETGIMAFIDLLKTQTSSLR--AVVHNASEWLA-ETPGEEADN--FTRMFSVHMLAPYLIN 137

Query: 174 QAVLPGMLKRKKGLSMLNI 192
               P +   +    +++I
Sbjct: 138 LHCEPLLTASEVA-DIVHI 155

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... Length = 288

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 23/157 (14%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIK-----SV 109
           A+VTG    IG++ A +L +TG  +V+    + +    ++D +  + + T +      + 
Sbjct: 26  AVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTN 85

Query: 110 VVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKN--------L 161
                   +E +     A    D  VL+NN    YP      + +              L
Sbjct: 86  SNVLPASCEEIINSCFRAFGRCD--VLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAEL 143

Query: 162 IKVNVEGTTKVTQAVLPGM------LKRKKGLSMLNI 192
           I  N      +T +                  S++N+
Sbjct: 144 IGTNAIAPFLLTMSFAQRQKGTNPNCTSSNL-SIVNL 179

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Length = 255

 Score = 61.9 bits (151), Expect = 5e-12
 Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK-DVSDSIQAKYAKTQIKSVVVDFS 114
             +TG   GIG +    LA+ G  ++ + R    ++ D+S     + A   + +V+    
Sbjct: 4   IAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETA---VAAVLDRCG 60

Query: 115 GDLDEGVER--IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
           G LD  V    +        + V +N  G+S         + +      + V     T+ 
Sbjct: 61  GVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQP 120

Query: 173 TQAVLPGMLKRKKG 186
             A LP +     G
Sbjct: 121 GAAELPMVEAMLAG 134

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236

 Score = 61.9 bits (151), Expect = 5e-12
 Identities = 16/138 (11%), Positives = 43/138 (31%), Gaps = 14/138 (10%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            +V G    +G +      K G  ++ +  + +   D +  +              +++ 
Sbjct: 6   VIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDG----------NKNWTE 55

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
                +E+   +++G  V  +    G     +    +        +IK +V  +    + 
Sbjct: 56  QEQSILEQTASSLQGSQVDGVFCVAGGWAGGSA-SSKDFVKNADLMIKQSVWSSAIAAKL 114

Query: 176 VLPGMLKRKKGLSMLNIG 193
               +   K G  +   G
Sbjct: 115 ATTHL---KPGGLLQLTG 129

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241

 Score = 62.0 bits (151), Expect = 5e-12
 Identities = 14/138 (10%), Positives = 38/138 (27%), Gaps = 14/138 (10%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            LV G    +G             +  +    ++    S  ++          +   F+ 
Sbjct: 10  VLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVK----------MTDSFTE 59

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
             D+    + + +    V  ++   G          +        + K ++  +T  +  
Sbjct: 60  QADQVTAEVGKLLGDQKVDAILCVAGGWAGGNA-KSKSLFKNCDLMWKQSIWTSTISSHL 118

Query: 176 VLPGMLKRKKGLSMLNIG 193
               +   K+G  +   G
Sbjct: 119 ATKHL---KEGGLLTLAG 133

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} Length = 281

 Score = 62.2 bits (152), Expect = 6e-12
 Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 35/159 (22%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGR------------NPDKLKDVSDSIQAKYAK 103
           AL+TG   G+G+S A  LA+ G ++ +  R              D L +    ++     
Sbjct: 13  ALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEK--TG 70

Query: 104 TQIKSVVVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARF-------FHEVD 154
            +  S  VD      L+  V   ++ + G+D  + I N GIS   A         + EV 
Sbjct: 71  RRCISAKVDVKDRAALESFVAEAEDTLGGID--IAITNAGIS-TIALLPEVESAQWDEV- 126

Query: 155 QVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
                  I  N+ GT     AV PGM+KR  G  ++ + 
Sbjct: 127 -------IGTNLTGTFNTIAAVAPGMIKRNYG-RIVTVS 157

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Length = 328

 Score = 62.1 bits (151), Expect = 7e-12
 Identities = 30/173 (17%), Positives = 50/173 (28%), Gaps = 38/173 (21%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKY------------- 101
           ALVTG    +G+S A  L   G  + L   R+  +   +S ++ A+              
Sbjct: 49  ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN 108

Query: 102 -AKTQIKSVVVDFSGDLDEGVER-IKEAIE---GLDVGVLINNVGISYP----------- 145
            A   +          L       +          D  VL+NN    YP           
Sbjct: 109 VATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCD--VLVNNASSFYPTPLLRNDEDGH 166

Query: 146 -YARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLK-----RKKGLSMLNI 192
                  E  +    +L   N      + +A    +       R    S++N+
Sbjct: 167 EPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINM 219

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} Length = 277

 Score = 61.8 bits (151), Expect = 7e-12
 Identities = 35/153 (22%), Positives = 72/153 (47%), Gaps = 21/153 (13%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV-------------GRNPDKLKDVSDSIQAKYA 102
           A +TG   G G++ A ++A  G +++ V               +PD L +    ++A  A
Sbjct: 14  AFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEA--A 71

Query: 103 KTQIKSVVVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKN 160
             +I + VVD      L + V+    A+  LD+  ++ N G++ P  + + ++     ++
Sbjct: 72  NRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDI--IVANAGVAAP--QAWDDITPEDFRD 127

Query: 161 LIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           ++ +NV GT     A  P +++  +G S++ I 
Sbjct: 128 VMDINVTGTWNTVMAGAPRIIEGGRGGSIILIS 160

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} Length = 259

 Score = 61.4 bits (150), Expect = 9e-12
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
            +V G    IG++ A + A+ G N+VL      +        I+         ++  D +
Sbjct: 11  IVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSA--LAIKADLT 68

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
              +++  +    +    +    L++  G          E+D+     ++ VN+      
Sbjct: 69  NAAEVEAAISAAADKFGEIH--GLVHVAGGLIARKT-IAEMDEAFWHQVLDVNLTSLFLT 125

Query: 173 TQAVLPGMLK 182
            +  LP M K
Sbjct: 126 AKTALPKMAK 135

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Length = 257

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 30/139 (21%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK-DVSDSIQAKYAKTQIKSVVVDFS 114
            +++G   GIG +    L   G  +V +     ++  D+S +   K A   I  V+   S
Sbjct: 4   IVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQA---IADVLAKCS 60

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
             +D                 L+   G+              +L N++ VN  G T++  
Sbjct: 61  KGMD----------------GLVLCAGLGPQTK---------VLGNVVSVNYFGATELMD 95

Query: 175 AVLPGMLKRKKGLSMLNIG 193
           A LP + K  +  + + I 
Sbjct: 96  AFLPALKKGHQP-AAVVIS 113

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* Length = 291

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 30/174 (17%), Positives = 50/174 (28%), Gaps = 38/174 (21%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKY------------- 101
           ALVTG    +G+S A  L   G  + L   R+  +   +S ++ A+              
Sbjct: 12  ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN 71

Query: 102 -AKTQIKSVVVDFSGDLDEGVER-IKEAIE---GLDVGVLINNVGISYP----------- 145
            A   +          L       +          D  VL+NN    YP           
Sbjct: 72  VATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCD--VLVNNASSFYPTPLLRNDEDGH 129

Query: 146 -YARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLK-----RKKGLSMLNIG 193
                  E  +    +L   N      + +A    +       R    S++N+ 
Sbjct: 130 EPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMV 183

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Length = 272

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 8/134 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVG--RNPDKLKDVSDSIQAKYAKTQ-IKSVVVD 112
            LVTG + GIG +     A+ G   V V    N +    V  +I     +   I   V +
Sbjct: 29  VLVTGGSRGIGAAVCRLAARQGWR-VGVNYAANREAADAVVAAITESGGEAVAIPGDVGN 87

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
            + D+      +      LD   L+NN GI     R   E+    ++ +++VNV G+   
Sbjct: 88  AA-DIAAMFSAVDRQFGRLD--GLVNNAGIVDYPQR-VDEMSVERIERMLRVNVTGSILC 143

Query: 173 TQAVLPGMLKRKKG 186
               +  M +   G
Sbjct: 144 AAEAVRRMSRLYSG 157

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Length = 253

 Score = 59.8 bits (146), Expect = 3e-11
 Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 17/141 (12%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI--QAKYAKTQIKSVVVDF 113
           ALVTG   G+G      L   G  +     N    + ++  +  ++ +       V  D 
Sbjct: 9   ALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMF-------VRHDV 61

Query: 114 S--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           S   D    +  ++  +  L+  VL+NN GI  P               L+K+N E    
Sbjct: 62  SSEADWTLVMAAVQRRLGTLN--VLVNNAGILLP--GDMETGRLEDFSRLLKINTESVFI 117

Query: 172 VTQAVLPGMLKRKKGLSMLNI 192
             Q  +  M  ++ G S++N+
Sbjct: 118 GCQQGIAAM--KETGGSIINM 136

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} PDB: 3uwr_A* Length = 286

 Score = 59.9 bits (146), Expect = 3e-11
 Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 23/156 (14%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV----------------GRNPDKLKDVSDSIQA 99
           A VTG   G G+S A +LA+ G +++ V                   P+ L + +D ++ 
Sbjct: 14  AFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKG 73

Query: 100 KYAKTQIKSVVVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVL 157
                +I +  VD      L   V+   E +  LD+  ++ N GI         +  +  
Sbjct: 74  --HNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDI--IVANAGIG-NGGDTLDKTSEED 128

Query: 158 LKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
              +I +N+ G  K  +A +P M+   +G S++   
Sbjct: 129 WTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTS 164

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} Length = 280

 Score = 59.9 bits (146), Expect = 4e-11
 Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 21/153 (13%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV-------------GRNPDKLKDVSDSIQAKYA 102
           A +TG   G G+S A +LA  G +++                 +P+ L + +  ++ +  
Sbjct: 18  AFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGR 77

Query: 103 KTQIKSVVVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKN 160
           K    + V+D      L E V    E    LDV  ++ N G+         E+       
Sbjct: 78  K--ALTRVLDVRDDAALRELVADGMEQFGRLDV--VVANAGVLSW--GRVWELTDEQWDT 131

Query: 161 LIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           +I VN+ GT +  +A +P M++   G S++ + 
Sbjct: 132 VIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVS 164

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} Length = 244

 Score = 59.5 bits (145), Expect = 4e-11
 Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 22/140 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            LVTG + GIGK+    L +   + V+              IQ  ++   +K +  D + 
Sbjct: 7   YLVTGGSKGIGKAVVELLLQNKNHTVINID-----------IQQSFSAENLKFIKADLT- 54

Query: 116 DLDEGVERIKEAIE--GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              + +  + + I+    D   +  N GI         ++D   +K ++ +NV  +    
Sbjct: 55  KQQD-ITNVLDIIKNVSFD--GIFLNAGILIK--GSIFDIDIESIKKVLDLNVWSSIYFI 109

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           + +   +   K G S++  G
Sbjct: 110 KGLENNL---KVGASIVFNG 126

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} Length = 278

 Score = 59.5 bits (145), Expect = 5e-11
 Identities = 30/153 (19%), Positives = 61/153 (39%), Gaps = 26/153 (16%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV------------GRNPDKLKDVSDSIQAKYAK 103
           A +TG   G G++ A +LA  G +++ V               P++L      ++     
Sbjct: 16  AFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVED--IG 73

Query: 104 TQIKSVVVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEV-DQVLLKN 160
           ++I +   D      L   ++   + +  LD+  ++ N GI+        +    V    
Sbjct: 74  SRIVARQADVRDRESLSAALQAGLDELGRLDI--VVANAGIAPM--SAGDDGWHDV---- 125

Query: 161 LIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
            I VN+ G     +  +P ++K+  G S++ I 
Sbjct: 126 -IDVNLTGVYHTIKVAIPTLVKQGTGGSIVLIS 157

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257

 Score = 59.2 bits (144), Expect = 5e-11
 Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 17/139 (12%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI--QAKYAKTQIKSVV 110
               +VTG + G+G +    LA+ G  ++ +   P   ++ +  +    ++    + +  
Sbjct: 7   SRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTN-- 64

Query: 111 VDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFF-----HEVDQVLLKNLIKVN 165
                D    +   K+    +    L+N  G +    +       H +D       + VN
Sbjct: 65  ---EADATAALAFAKQEFGHVH--GLVNCAGTAPG-EKILGRSGPHALDS--FARTVAVN 116

Query: 166 VEGTTKVTQAVLPGMLKRK 184
           + GT  + +     M + +
Sbjct: 117 LIGTFNMIRLAAEVMSQGE 135

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Length = 202

 Score = 58.4 bits (142), Expect = 6e-11
 Identities = 15/139 (10%), Positives = 43/139 (30%), Gaps = 31/139 (22%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK-DVSDSIQAKYAKTQIKSVVVDFS 114
            L+ G +  +G +   +L K    ++  GR+   +  D+++                   
Sbjct: 6   ILLIGASGTLGSAVKERLEKKA-EVITAGRHSGDVTVDITNI------------------ 46

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
               + ++++ E +  +D   +++  G +        E+        I   + G   +  
Sbjct: 47  ----DSIKKMYEQVGKVD--AIVSATGSATFSP--LTELTPEKNAVTISSKLGGQINLVL 98

Query: 175 AVLPGMLKRKKGLSMLNIG 193
             +  +       S     
Sbjct: 99  LGIDSL---NDKGSFTLTT 114

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Length = 271

 Score = 58.7 bits (143), Expect = 9e-11
 Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 16/143 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAKTQ-IKSVVVDF 113
           A VTG + GIG + A +LA  G  + L      ++ + V   I+    +   I++   D 
Sbjct: 34  AFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRD- 92

Query: 114 SGDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARF-FHEVDQVLLKNLIKVNVEGTT 170
           +  +++ +    EA+ GLD  +L+N+ GI +  P       + D+V     + VN     
Sbjct: 93  AEAIEQAIRETVEALGGLD--ILVNSAGIWHSAPLEETTVADFDEV-----MAVNFRAPF 145

Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
              ++    +     G  ++ IG
Sbjct: 146 VAIRSASRHL--GDGG-RIITIG 165

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Length = 267

 Score = 58.3 bits (142), Expect = 1e-10
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 24/147 (16%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           A+VTG + GIG + A +LA  G  +V+         ++V+  I+A  A  +  +   D S
Sbjct: 30  AIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEA--AGGKALTAQADVS 87

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISY--PYARF----FHEVDQVLLKNLIKVNV 166
               +       +EA  G+D  VL+NN GI      A      F  V        I VN+
Sbjct: 88  DPAAVRRLFATAEEAFGGVD--VLVNNAGIMPLTTIAETGDAVFDRV--------IAVNL 137

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
           +GT    +     +  R  G  ++N+ 
Sbjct: 138 KGTFNTLREAAQRL--RVGG-RIINMS 161

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* Length = 276

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 23/158 (14%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIK-----SV 109
           A++TG    IG S A +L + G  +V+  R +    + +   + A  A + +      S+
Sbjct: 14  AVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSL 73

Query: 110 VVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKN--------- 160
                   ++ ++    A    D  VL+NN    YP      +                 
Sbjct: 74  SSSLLDCCEDIIDCSFRAFGRCD--VLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAE 131

Query: 161 LIKVNVEGTTKVTQAVLP-----GMLKRKKGLSMLNIG 193
           L   N      + +A        G  + +   S++N+ 
Sbjct: 132 LFGSNAVAPLFLIRAFARRQGEGGAWRSRNL-SVVNLC 168

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 19/141 (13%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI--QAKYAKTQIKSVV 110
           G  A++TG   G+G + A +L   G + VL+       +  +  +     +A   + S  
Sbjct: 12  GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS-- 69

Query: 111 VDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFF-------HEVDQVLLKNLIK 163
                D+   +   K     +D  V +N  GI+   ++ +       H ++    + ++ 
Sbjct: 70  ---EKDVQTALALAKGKFGRVD--VAVNCAGIAVA-SKTYNLKKGQTHTLED--FQRVLD 121

Query: 164 VNVEGTTKVTQAVLPGMLKRK 184
           VN+ GT  V + V   M + +
Sbjct: 122 VNLMGTFNVIRLVAGEMGQNE 142

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262

 Score = 57.1 bits (139), Expect = 2e-10
 Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 9/131 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVL---VGRNPDKLKDVSDSIQAKYAKTQ-IKSVVV 111
            ++ G    +G   A   A   +NLVL     ++ D    + D ++ + AK    +S + 
Sbjct: 14  IVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLS 73

Query: 112 DFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           +   ++ +  +  ++    +D  + IN VG      +   E  +     +  +N +    
Sbjct: 74  NEE-EVAKLFDFAEKEFGKVD--IAINTVGKVLK--KPIVETSEAEFDAMDTINNKVAYF 128

Query: 172 VTQAVLPGMLK 182
             +     M  
Sbjct: 129 FIKQAAKHMNP 139

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* Length = 319

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 16/140 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVL--VGRNPDKLKDVSDSIQAKYAKTQIKSV---- 109
            LVTG   G+G+++A   A+ G  +V+  +G +         S  A     +I+      
Sbjct: 12  VLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFK--GVGKGSSAADKVVEEIRRRGGKA 69

Query: 110 VVDFSGDLDEGVERIKEAIE---GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNV 166
           V ++   ++ G + +K A++    +D  V++NN GI     R F  +       + +V++
Sbjct: 70  VANY-DSVEAGEKLVKTALDTFGRID--VVVNNAGILRD--RSFSRISDEDWDIIQRVHL 124

Query: 167 EGTTKVTQAVLPGMLKRKKG 186
            G+ +VT+A    M K+  G
Sbjct: 125 RGSFQVTRAAWDHMKKQNYG 144

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            ++TG   G+G   A +LA+ G  +++  R+  K +  + ++       Q++   +D   
Sbjct: 19  VVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAG-----QVEVRELDLQ- 72

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYP 145
           DL   V R  + + G D  VLINN GI   
Sbjct: 73  DLS-SVRRFADGVSGAD--VLINNAGIMAV 99

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} Length = 613

 Score = 57.1 bits (138), Expect = 5e-10
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 22/143 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVL---------VGRNPDKLKDVSDSIQAKYAKTQI 106
           A+VTG   G+G+ +A   A+ G  +V+          G +      V D I+    +   
Sbjct: 22  AVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGE--- 78

Query: 107 KSVVVDFSGDLDEGVERIKEAIE---GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIK 163
               V     + +G + I+ AI+    +D  +L+NN GI     R   +  +     +  
Sbjct: 79  ---AVADYNSVIDGAKVIETAIKAFGRVD--ILVNNAGILRD--RSLVKTSEQDWNLVND 131

Query: 164 VNVEGTTKVTQAVLPGMLKRKKG 186
           V+++G+ K TQA  P M K+  G
Sbjct: 132 VHLKGSFKCTQAAFPYMKKQNYG 154

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 25/137 (18%), Positives = 53/137 (38%), Gaps = 12/137 (8%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI--QAKYAKTQIKSVV 110
           G+ A+V+G   G+G++   +L   GL +V+     +K K ++D +  +A++  T + S  
Sbjct: 30  GASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTS-- 87

Query: 111 VDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYP---YARFFHEVDQVLLKNLIKVNVE 167
                 +   +E   +         ++ + G         R     D       I + + 
Sbjct: 88  ---EDSVLAAIEAANQLGRLRY--AVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLN 142

Query: 168 GTTKVTQAVLPGMLKRK 184
           GT  V + V   +   +
Sbjct: 143 GTYNVARLVAASIAAAE 159

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} Length = 287

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 30/153 (19%), Positives = 51/153 (33%), Gaps = 27/153 (17%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV------------GRNPDKLKDVSDSIQAKYAK 103
            LVTG   G G+S A +LA+ G +++L                   L++    ++     
Sbjct: 13  VLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEK--TG 70

Query: 104 TQIKSVVVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEV-DQVLLKN 160
            +  +  VD      +   +         LD  V++ N GI    A    +         
Sbjct: 71  RKAYTAEVDVRDRAAVSRELANAVAEFGKLD--VVVANAGICPLGAHLPVQAFADA---- 124

Query: 161 LIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG 193
              V+  G      A LP +     G S++  G
Sbjct: 125 -FDVDFVGVINTVHAALPYL---TSGASIITTG 153

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 22/143 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVL---------VGRNPDKLKDVSDSIQAKYAKTQI 106
            ++TG   G+GK ++ + AK G  +V+          G N      V D I         
Sbjct: 11  VIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGV--- 67

Query: 107 KSVVVDFSGDLDEGVERIKEAIE---GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIK 163
              V D+  ++ +G + ++ A++    +   V+INN GI         ++ +   K +I 
Sbjct: 68  --AVADY-NNVLDGDKIVETAVKNFGTVH--VIINNAGILRD--ASMKKMTEKDYKLVID 120

Query: 164 VNVEGTTKVTQAVLPGMLKRKKG 186
           V++ G   VT+A  P   K+K G
Sbjct: 121 VHLNGAFAVTKAAWPYFQKQKYG 143

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 18/139 (12%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVV 111
               L+TG   G+GK +A   AK G  +V+   N         D I+A   +        
Sbjct: 322 DKVVLITGAGAGLGKEYAKWFAKYGAKVVV---NDFKDATKTVDEIKAAGGE------AW 372

Query: 112 DFSGDLDEGVERI-KEAIE---GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVE 167
               D+ +  E I K  I+    +D+  L+NN GI     R F ++ +    ++ +V++ 
Sbjct: 373 PDQHDVAKDSEAIIKNVIDKYGTIDI--LVNNAGILRD--RSFAKMSKQEWDSVQQVHLI 428

Query: 168 GTTKVTQAVLPGMLKRKKG 186
           GT  +++   P  ++++ G
Sbjct: 429 GTFNLSRLAWPYFVEKQFG 447

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Length = 283

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 27/140 (19%), Positives = 57/140 (40%), Gaps = 10/140 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAKTQ-IKSVVVDF 113
           ALVTG   GIG+  A +L + G  +++    + +  ++V  +I+   +    +K+ V   
Sbjct: 32  ALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVV 91

Query: 114 SGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             D+    E   +    LD  ++ +N G+   +     +V       +  +N  G   V 
Sbjct: 92  -EDIVRMFEEAVKIFGKLD--IVCSNSGV-VSFGH-VKDVTPEEFDRVFTINTRGQFFVA 146

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           +     +     G  ++ +G
Sbjct: 147 REAYKHL--EIGG-RLILMG 163

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Length = 274

 Score = 54.1 bits (131), Expect = 4e-09
 Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 10/140 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAK-TQIKSVVVDF 113
           AL TG   GIG+  A +L + G ++V+  G +    ++V   ++   A+   I++ +   
Sbjct: 24  ALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKP 83

Query: 114 SGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
           S ++    ++      GLD   +++N G+   +     EV Q L   +  +N  G   V 
Sbjct: 84  S-EVVALFDKAVSHFGGLD--FVMSNSGM-EVWCD-ELEVTQELFDKVFNLNTRGQFFVA 138

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           Q  L      ++G  ++   
Sbjct: 139 QQGLKHC---RRGGRIILTS 155

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} Length = 294

 Score = 53.7 bits (130), Expect = 6e-09
 Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 22/147 (14%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSV---VVD 112
           ALVTG   GIG++ A   A+ G ++ +    P + +D      A+  K  I+      V 
Sbjct: 52  ALVTGGDSGIGRAAAIAYAREGADVAINYL-PAEEED------AQQVKALIEECGRKAVL 104

Query: 113 FSGDL-DEG-----VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNV 166
             GDL DE      V + +EA+ GLD  +L    G          ++     +    VNV
Sbjct: 105 LPGDLSDESFARSLVHKAREALGGLD--ILALVAGKQTAIPE-IKDLTSEQFQQTFAVNV 161

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
                +TQ  +P +    KG S++   
Sbjct: 162 FALFWITQEAIPLL---PKGASIITTS 185

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A Length = 270

 Score = 53.4 bits (129), Expect = 7e-09
 Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 10/140 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAK-TQIKSVVVDF 113
           ALVTG   GIG + A  L + G  +V+    +    + V   I+A  +    IK+ +   
Sbjct: 21  ALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQ- 79

Query: 114 SGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             ++ +  ++       LD  + ++N G+   +     +V +     +  +N  G   V 
Sbjct: 80  VPEIVKLFDQAVAHFGHLD--IAVSNSGV-VSFGH-LKDVTEEEFDRVFSLNTRGQFFVA 135

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           +     +    +G  ++   
Sbjct: 136 REAYRHL---TEGGRIVLTS 152

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Length = 255

 Score = 52.5 bits (127), Expect = 1e-08
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 16/146 (10%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAKTQ-IKSVVVDF 113
           ALVTG + GIG++ A +LA  G  + +  G   ++ ++    IQ+       I + +   
Sbjct: 10  ALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLES- 68

Query: 114 SGDLDEGVERIKEAIE------GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVE 167
              ++     +   ++        D  +LINN GI  P A    E  +     ++ VN +
Sbjct: 69  LHGVEALYSSLDNELQNRTGSTKFD--ILINNAGI-GPGAF-IEETTEQFFDRMVSVNAK 124

Query: 168 GTTKVTQAVLPGMLKRKKGLSMLNIG 193
               + Q  L  +   +    ++NI 
Sbjct: 125 APFFIIQQALSRL---RDNSRIINIS 147

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  A+V   T  +G   A  LA  G  +VL GR  DK +  +DS+  ++   ++     +
Sbjct: 119 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAE 175

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGI 142
            + D         EA++G         +G+
Sbjct: 176 TADD-----ASRAEAVKGAHFVFTAGAIGL 200

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Length = 291

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 23/147 (15%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSV---VVD 112
            L+TG   GIG++ +   AK G N+ +       L +  D   A   K  ++      V 
Sbjct: 50  VLITGGDSGIGRAVSIAFAKEGANIAIA-----YLDEEGD---ANETKQYVEKEGVKCVL 101

Query: 113 FSGDL-DEG-----VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNV 166
             GDL DE      V+     +  L+  +L+NNV   YP       +    L+   ++N+
Sbjct: 102 LPGDLSDEQHCKDIVQETVRQLGSLN--ILVNNVAQQYPQQG-LEYITAEQLEKTFRINI 158

Query: 167 EGTTKVTQAVLPGMLKRKKGLSMLNIG 193
                VT+A L  +   K+G  ++N  
Sbjct: 159 FSYFHVTKAALSHL---KQGDVIINTA 182

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} Length = 322

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 37/146 (25%), Positives = 54/146 (36%), Gaps = 26/146 (17%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVL--VGRNPDKLKDVSDSIQAKYAKTQIKS----- 108
            +VTG   GIG++ A   A  G  +V+  +G   D     S    A+    +I +     
Sbjct: 30  VIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDG-SPASGGSAAQSVVDEITAAGGEA 88

Query: 109 -VVVDFSGDLDEGVERIKEAIE---GLDVGVLINNVGISYPYARFFH-----EVDQVLLK 159
                   D D+    I+ A+E   GLD  VL+NN GI     R        E D V   
Sbjct: 89  VADGSNVADWDQAAGLIQTAVETFGGLD--VLVNNAGIVRD--RMIANTSEEEFDAV--- 141

Query: 160 NLIKVNVEGTTKVTQAVLPGMLKRKK 185
             I V+++G     +          K
Sbjct: 142 --IAVHLKGHFATMRHAAAYWRGLSK 165

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} Length = 257

 Score = 47.6 bits (114), Expect = 6e-07
 Identities = 19/136 (13%), Positives = 48/136 (35%), Gaps = 19/136 (13%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
            + A+VTG   G+G +   +L   G  +V++    + +              + +    D
Sbjct: 9   DAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDV--------VADLGDRARFAAAD 60

Query: 113 FSGDLDEGVERIKEAIEGL-DVGVLINNVGISYPYARFF-----HEVDQVLLKNLIKVNV 166
            +   +  V    +  E +  + +++N  G      R         +     + ++ +N+
Sbjct: 61  VT--DEAAVASALDLAETMGTLRIVVNCAGTGNA-IRVLSRDGVFSLAA--FRKIVDINL 115

Query: 167 EGTTKVTQAVLPGMLK 182
            G+  V +     + K
Sbjct: 116 VGSFNVLRLAAERIAK 131

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 242

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 25/135 (18%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG   G+G++ A  L   G  +V++    +            Y +  +         
Sbjct: 5   ALVTGGASGLGRAAALALKARGYRVVVLDLRREGE-------DLIYVEGDVTR------- 50

Query: 116 DLDEGVER-IKEAIEGLDVGVLINNVGISYPYARFF-----HEVDQVLLKNLIKVNVEGT 169
             +E V R +  A E   +  +++  G+     +       H ++    + +++VN+ GT
Sbjct: 51  --EEDVRRAVARAQEEAPLFAVVSAAGVGLA-EKILGKEGPHGLES--FRRVLEVNLLGT 105

Query: 170 TKVTQAVLPGMLKRK 184
             V +     M +  
Sbjct: 106 FNVLRLAAWAMRENP 120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 36/141 (25%)

Query: 91  KDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERI------------KEAIEGL---DVGV 135
           KDV D  ++  +K +I  +++  S D   G  R+            ++ +E +   +   
Sbjct: 36  KDVQDMPKSILSKEEIDHIIM--SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93

Query: 136 LINNV-----GISYPYARFFHEVDQVLLKN----LIKVNV---EGTTKVTQAVLPGMLKR 183
           L++ +       S     +  + D+  L N      K NV   +   K+ QA+L   L+ 
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDR--LYNDNQVFAKYNVSRLQPYLKLRQALLE--LRP 149

Query: 184 KKGLS---MLNIGKAELMCSV 201
            K +    +L  GK  +   V
Sbjct: 150 AKNVLIDGVLGSGKTWVALDV 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	100.0
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	100.0
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	99.97
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	99.97
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.97
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	99.97
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	99.97
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	99.97
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	99.97
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	99.96
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	99.96
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	99.96
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	99.96
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	99.96
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	99.96
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	99.96
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	99.96
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	99.96
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	99.96
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	99.96
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	99.96
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.96
4dqx_A	277	Probable oxidoreductase protein; structural genomi	99.96
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	99.96
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	99.96
3imf_A	257	Short chain dehydrogenase; structural genomics, in	99.96
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	99.96
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	99.96
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	99.96
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	99.96
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	99.96
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	99.96
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	99.96
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	99.96
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	99.96
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	99.96
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	99.96
3rih_A	293	Short chain dehydrogenase or reductase; structural	99.96
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	99.95
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	99.95
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	99.95
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	99.95
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	99.95
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	99.95
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	99.95
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	99.95
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	99.95
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	99.95
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	99.95
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	99.95
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	99.95
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	99.95
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	99.95
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	99.95
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	99.95
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	99.95
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	99.95
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.95
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	99.95
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	99.95
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	99.95
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	99.95
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	99.95
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	99.95
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	99.95
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	99.95
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	99.95
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	99.95
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	99.95
3cxt_A	291	Dehydrogenase with different specificities; rossma	99.95
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	99.95
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	99.95
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	99.95
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	99.95
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	99.95
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	99.95
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	99.95
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	99.95
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	99.95
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	99.95
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	99.95
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	99.95
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	99.95
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	99.95
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	99.95
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	99.95
1xhl_A	297	Short-chain dehydrogenase/reductase family member	99.95
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	99.94
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	99.94
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	99.94
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	99.94
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	99.94
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	99.94
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	99.94
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	99.94
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	99.94
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	99.94
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	99.94
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	99.94
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.94
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	99.94
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	99.94
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	99.94
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	99.94
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.94
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	99.94
1xkq_A	280	Short-chain reductase family member (5D234); parra	99.94
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	99.94
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	99.94
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	99.94
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.94
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	99.94
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	99.94
1spx_A	278	Short-chain reductase family member (5L265); paral	99.94
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	99.94
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.94
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	99.94
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	99.94
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	99.94
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	99.94
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	99.94
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	99.94
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	99.94
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	99.94
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	99.94
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	99.94
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.94
1xq1_A	266	Putative tropinone reducatse; structural genomics,	99.94
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	99.94
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.94
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	99.93
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	99.93
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	99.93
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	99.93
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	99.93
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	99.93
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	99.93
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	99.93
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	99.93
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	99.93
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	99.93
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	99.93
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	99.93
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	99.93
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	99.93
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.93
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	99.93
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.93
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	99.93
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	99.93
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	99.93
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	99.93
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	99.93
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	99.93
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	99.93
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	99.93
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	99.93
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	99.93
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	99.93
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	99.93
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	99.93
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	99.93
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	99.93
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	99.93
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	99.93
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	99.93
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	99.92
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	99.92
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	99.92
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.92
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	99.92
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	99.92
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	99.92
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	99.92
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	99.92
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	99.92
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	99.92
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	99.92
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	99.92
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	99.92
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	99.92
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.92
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	99.92
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	99.92
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	99.92
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	99.92
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	99.92
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	99.92
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	99.92
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	99.91
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	99.91
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	99.91
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	99.91
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	99.91
4e4y_A	244	Short chain dehydrogenase family protein; structur	99.91
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	99.9
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	99.9
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	99.9
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	99.9
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	99.9
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	99.9
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	99.89
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	99.89
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	99.89
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	99.89
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	99.89
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	99.89
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	99.89
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	99.89
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	99.88
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	99.87
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	99.86
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	99.86
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.86
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	99.85
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	99.85
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	99.84
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	99.84
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	99.83
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	99.83
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	99.82
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	99.82
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.78
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	99.76
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	99.76
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	99.75
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	99.73
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	99.72
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	99.72
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	99.71
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	99.7
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	99.7
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	99.69
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	99.68
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	99.67
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	99.67
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	99.66
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	99.66
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	99.65
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	99.65
1xq6_A	253	Unknown protein; structural genomics, protein stru	99.65
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	99.65
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	99.65
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	99.65
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	99.65
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	99.64
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	99.63
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	99.62
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	99.62
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	99.62
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	99.61
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	99.61
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	99.6
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	99.6
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	99.59
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	99.59
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	99.59
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	99.58
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	99.58
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	99.57
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	99.57
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	99.57
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	99.56
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	99.55
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	99.55
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	99.55
4f6c_A	427	AUSA reductase domain protein; thioester reductase	99.55
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	99.55
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	99.54
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	99.53
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	99.53
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	99.53
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	99.52
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	99.52
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	99.52
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	99.51
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	99.51
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	99.51
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	99.5
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	99.5
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	99.5
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	99.5
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	99.49
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	99.49
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	99.48
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	99.47
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	99.45
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	99.44
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	99.44
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.42
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	99.41
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	99.41
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.41
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	99.39
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	99.38
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	99.37
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	99.37
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	99.36
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	99.36
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	99.34
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	99.34
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	99.31
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	99.29
4f6l_B	508	AUSA reductase domain protein; thioester reductase	99.29
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	99.28
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	99.23
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	99.19
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	99.13
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	99.1
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	99.06
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	99.06
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	99.05
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	99.03
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	99.03
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	99.02
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	99.01
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.95
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	98.91
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	98.84
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	98.78
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.76
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.69
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.69
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	98.65
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	98.65
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	98.62
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	98.61
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	98.6
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	98.59
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	98.58
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	98.56
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.55
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	98.53
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.52
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	98.45
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	98.44
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.41
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.41
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	98.39
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.38
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	98.38
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	98.37
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	98.36
3gms_A	340	Putative NADPH:quinone reductase; structural genom	98.36
3gxh_A	157	Putative phosphatase (DUF442); YP_001181608.1, str	98.35
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	98.34
4eye_A	342	Probable oxidoreductase; structural genomics, niai	98.31
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.24
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	98.21
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.17
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	98.13
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	98.12
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.11
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	98.1
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.1
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.08
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	98.08
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	98.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	97.99
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.98
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	97.96
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	97.94
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.91
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.9
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.89
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.88
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.82
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.82
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	97.82
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	97.81
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	97.76
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.75
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.74
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	97.74
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.73
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.69
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.68
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.65
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	97.63
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	97.57
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	97.57
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.56
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	97.55
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	97.55
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.54
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	97.52
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	97.52
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	97.51
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	97.5
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.5
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	97.47
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	97.47
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	97.47
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	97.45
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.45
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	97.44
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	97.43
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.4
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.39
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.39
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	97.38
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.37
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.36
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	97.36
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	97.36
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	97.35
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.34
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.32
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	97.3
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.3
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.29
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.27
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	97.26
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.24
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.24
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	97.23
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	97.21
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.2
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	97.19
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.15
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.14
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.14
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	97.11
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.1
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	97.09
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	97.08
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	97.07
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.05
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	97.04
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	97.03
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.0
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	96.99
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.99
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	96.97
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.95
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.88
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.87
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	96.86
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.86
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.84
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.84
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	96.8
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.79
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	96.78
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.74
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.67
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.65
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.65
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.64
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.61
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	96.56
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.54
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.54
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.52
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.5
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.49
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	96.48
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.48
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.42
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.42
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.38
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.35
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.34
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.33
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.33
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	96.32
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.31
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.31
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.3
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	96.3
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.29
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	96.29
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	96.28
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.27
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	96.27
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.26
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.24
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.23
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.22
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.2
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.2
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.17
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.15
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	96.11
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.06
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.05
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.05
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.99
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	95.97
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	95.97
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	95.97
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	95.95
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.94
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.93
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	95.92
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	95.92
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	95.91
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	95.9
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	95.82
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	95.81

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=100.00  E-value=7.5e-34  Score=223.16  Aligned_cols=150  Identities=27%  Similarity=0.312  Sum_probs=135.3

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      .+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++++.  +.++..+.+|+++.  +++.++++.+
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dvt~~~~v~~~~~~~~~   80 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGM--GKEVLGVKADVSKKKDVEEFVRRTFE   80 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999999999999999874  56788999999985  3677889999


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++++|  ++|||||+..+ .+++++.++|+|++++++|+.|+|+++|+++|+|++++.|+ |||+||.++..+.|.+
T Consensus        81 ~~G~iD--iLVNNAGi~~~-~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~-IVnisS~~g~~~~~~~  154 (254)
T 4fn4_A           81 TYSRID--VLCNNAGIMDG-VTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGV-IVNTASIAGIRGGFAG  154 (254)
T ss_dssp             HHSCCC--EEEECCCCCCT-TCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTCSSSSC
T ss_pred             HcCCCC--EEEECCcccCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcE-EEEEechhhcCCCCCC
Confidence            999755  99999998753 24689999999999999999999999999999999988787 9999999999998864

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=100.00  E-value=3e-33  Score=219.89  Aligned_cols=150  Identities=24%  Similarity=0.368  Sum_probs=133.6

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++++||+++||||++|||+++|+.|+++|++|++++|+.+++++..+++++.  +.++..+.+|++++  +++.++++.+
T Consensus         5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (255)
T 4g81_D            5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRK--GYDAHGVAFDVTDELAIEAAFSKLDA   82 (255)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT--TCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            5788999999999999999999999999999999999999999999999875  56788899999985  3677788888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++++|  ++|||||+...  +++.+.++|+|++++++|+.|+|+++|+++|+|++++.+++|||+||.++..+.|.+
T Consensus        83 ~~G~iD--iLVNNAG~~~~--~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~~~  156 (255)
T 4g81_D           83 EGIHVD--ILINNAGIQYR--KPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTV  156 (255)
T ss_dssp             TTCCCC--EEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCTTC
T ss_pred             HCCCCc--EEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCCCc
Confidence            888655  99999999865  459999999999999999999999999999999876554459999999999998864

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=99.97  E-value=1.8e-31  Score=208.22  Aligned_cols=146  Identities=23%  Similarity=0.272  Sum_probs=121.6

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      .++++||+++||||++|||+++|+.|+++|++|++++|+.+  ++..+++++.  +.+...+.+|++|+.  .++.+. .
T Consensus         4 ~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~--g~~~~~~~~Dv~d~~--~v~~~~-~   76 (247)
T 4hp8_A            4 PFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKD--GGNASALLIDFADPL--AAKDSF-T   76 (247)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHT--TCCEEEEECCTTSTT--TTTTSS-T
T ss_pred             CcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHh--CCcEEEEEccCCCHH--HHHHHH-H
Confidence            46789999999999999999999999999999999999864  3555666664  567888999999862  222222 1


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  ++|++|||||+...  .++.+.++|+|++++++|+.|+|+++|+++|+|++++++++|||+||..+..+.|.+
T Consensus        77 ~g--~iDiLVNNAGi~~~--~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~~~  149 (247)
T 4hp8_A           77 DA--GFDILVNNAGIIRR--ADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGIRV  149 (247)
T ss_dssp             TT--CCCEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCSSC
T ss_pred             hC--CCCEEEECCCCCCC--CCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCCCC
Confidence            24  46699999999865  459999999999999999999999999999999988654459999999999998864

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=99.97  E-value=4.8e-31  Score=209.13  Aligned_cols=143  Identities=23%  Similarity=0.253  Sum_probs=126.6

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++     +.+...+.+|++|.  +++.++++.++
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~~~~  100 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-----GGGAVGIQADSANLAELDRLYEKVKAE  100 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999999999999998887776     34567889999985  36777888999


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +|+  +|++|||||+...  .++.+.++|+|++++++|+.|+++++|+++|+|++  .|+ ||++||.++..+.|..
T Consensus       101 ~G~--iDiLVNNAG~~~~--~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~--~G~-IInisS~~~~~~~~~~  170 (273)
T 4fgs_A          101 AGR--IDVLFVNAGGGSM--LPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLAR--GSS-VVLTGSTAGSTGTPAF  170 (273)
T ss_dssp             HSC--EEEEEECCCCCCC--CCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE--EEE-EEEECCGGGGSCCTTC
T ss_pred             cCC--CCEEEECCCCCCC--CChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhh--CCe-EEEEeehhhccCCCCc
Confidence            996  5599999998765  56999999999999999999999999999999853  355 9999999999998854

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=99.97  E-value=3.2e-30  Score=201.75  Aligned_cols=140  Identities=19%  Similarity=0.276  Sum_probs=122.8

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~  130 (206)
                      +|+++||||++|||+++|++|+++|++|++++|++++++++.++      ......+.+|++|+  +++.++++.+++++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~   75 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE------RPNLFYFHGDVADPLTLKKFVEYAMEKLQR   75 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT------CTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh------cCCEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            58999999999999999999999999999999998877655443      34578899999985  36777889999997


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +|  ++|||||+...  .++.+.+.|+|++++++|+.|++.++|+++|+|++++ |+ ||++||..+..+.|.+
T Consensus        76 iD--iLVNNAG~~~~--~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-G~-IInisS~~~~~~~~~~  143 (247)
T 3ged_A           76 ID--VLVNNACRGSK--GILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK-GR-IINIASTRAFQSEPDS  143 (247)
T ss_dssp             CC--EEEECCCCCCC--CGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CE-EEEECCGGGTSCCTTC
T ss_pred             CC--EEEECCCCCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-Cc-EEEEeecccccCCCCC
Confidence            55  99999999765  4599999999999999999999999999999998664 76 9999999999998865

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=99.97  E-value=5.5e-30  Score=201.86  Aligned_cols=147  Identities=18%  Similarity=0.242  Sum_probs=124.8

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      +++++||+++||||++|||+++|++|+++|++|++++|+.++.+. .+++.+.  +.+...+.+|++++  +++.++++.
T Consensus         2 ~~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~-~~~~~~~--~~~~~~~~~Dv~~~~~v~~~v~~~~   78 (258)
T 4gkb_A            2 DLNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAF-LDALAQR--QPRATYLPVELQDDAQCRDAVAQTI   78 (258)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHH-HHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHH-HHHHHhc--CCCEEEEEeecCCHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999877543 3445554  45677889999985  367788999


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++++|  ++|||||+....   ..+.+.|+|++.+++|+.|++.++|+++|+|+++ +|+ |||+||.++..+.|.+
T Consensus        79 ~~~G~iD--iLVNnAGi~~~~---~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~G~-IVnisS~~~~~~~~~~  150 (258)
T 4gkb_A           79 ATFGRLD--GLVNNAGVNDGI---GLDAGRDAFVASLERNLIHYYAMAHYCVPHLKAT-RGA-IVNISSKTAVTGQGNT  150 (258)
T ss_dssp             HHHSCCC--EEEECCCCCCCC---CTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCE-EEEECCTHHHHCCSSC
T ss_pred             HHhCCCC--EEEECCCCCCCC---CccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCe-EEEEeehhhccCCCCc
Confidence            9999755  999999986532   4578999999999999999999999999999755 476 9999999999988854

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=99.97  E-value=3.1e-30  Score=200.80  Aligned_cols=136  Identities=28%  Similarity=0.405  Sum_probs=118.5

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      ++||+++||||++|||+++|++|+++|++|++++|+.+++++.        .+.++....+|++|+  +.++++.+++++
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~--------~~~~~~~~~~Dv~~~--~~v~~~~~~~g~   78 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAP--------RHPRIRREELDITDS--QRLQRLFEALPR   78 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSC--------CCTTEEEEECCTTCH--HHHHHHHHHCSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhh--------hcCCeEEEEecCCCH--HHHHHHHHhcCC
Confidence            4799999999999999999999999999999999998775431        245688899999986  667888888986


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +  |++|||||+..    ++++.+.|+|++++++|+.|+++++|+++|+|+++ .|+ |||+||..+..+.|.+
T Consensus        79 i--DiLVNNAGi~~----~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~-~G~-IVnisS~~~~~~~~~~  144 (242)
T 4b79_A           79 L--DVLVNNAGISR----DREEYDLATFERVLRLNLSAAMLASQLARPLLAQR-GGS-ILNIASMYSTFGSADR  144 (242)
T ss_dssp             C--SEEEECCCCCC----GGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CEE-EEEECCGGGTSCCSSC
T ss_pred             C--CEEEECCCCCC----CcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCe-EEEEeeccccCCCCCC
Confidence            5  59999999864    36789999999999999999999999999988654 366 9999999999998864

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=99.97  E-value=6.2e-30  Score=202.05  Aligned_cols=140  Identities=18%  Similarity=0.244  Sum_probs=120.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++++||+++||||++|||+++|++|+++|++|++++|+.++.            ..+...+++|+++.  +++.++.+.+
T Consensus         7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~------------~~~~~~~~~Dv~~~~~v~~~~~~~~~   74 (261)
T 4h15_A            7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG------------LPEELFVEADLTTKEGCAIVAEATRQ   74 (261)
T ss_dssp             CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT------------SCTTTEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC------------CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999986431            11224678999975  3677788888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +++++|  ++|||||+......++.+.++|+|++.+++|+.|+++++|+++|+|++++.|+ ||++||..+..+.|.
T Consensus        75 ~~G~iD--ilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~-Iv~isS~~~~~~~~~  148 (261)
T 4h15_A           75 RLGGVD--VIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGV-VVHVTSIQRVLPLPE  148 (261)
T ss_dssp             HTSSCS--EEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCTT
T ss_pred             HcCCCC--EEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCce-EEEEEehhhccCCCC
Confidence            888655  99999998765556799999999999999999999999999999999988887 999999999988763

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=99.97  E-value=4.1e-29  Score=197.91  Aligned_cols=152  Identities=16%  Similarity=0.236  Sum_probs=134.4

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      ++++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++....++.++..+.+|++|.  +++.++++.
T Consensus         3 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   82 (265)
T 3lf2_A            3 PYDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACE   82 (265)
T ss_dssp             CCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999888765566789999999985  356677888


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +.+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|+|++++.|+ ||++||..+..+.|..
T Consensus        83 ~~~g~--id~lvnnAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  156 (265)
T 3lf2_A           83 RTLGC--ASILVNNAGQGRV--STFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAA-IVCVNSLLASQPEPHM  156 (265)
T ss_dssp             HHHCS--CSEEEECCCCCCC--BCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEE-EEEEEEGGGTSCCTTB
T ss_pred             HHcCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE-EEEECCcccCCCCCCc
Confidence            88886  4599999998765  4588999999999999999999999999999998887777 9999999999888754

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=99.96  E-value=7.9e-29  Score=196.44  Aligned_cols=150  Identities=29%  Similarity=0.477  Sum_probs=134.4

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      +++++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++...+++..+..+.+|+++.  +.++++.++
T Consensus         5 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~--~~~~~~~~~   82 (267)
T 3t4x_A            5 HMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTE--QGCQDVIEK   82 (267)
T ss_dssp             CCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSH--HHHHHHHHH
T ss_pred             ccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCH--HHHHHHHHh
Confidence            356789999999999999999999999999999999999999999999998877778889999999986  667777888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.++..+.|..
T Consensus        83 ~g~--id~lv~nAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  154 (267)
T 3t4x_A           83 YPK--VDILINNLGIFEP--VEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGR-VIFIASEAAIMPSQEM  154 (267)
T ss_dssp             CCC--CSEEEECCCCCCC--CCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEE-EEEECCGGGTSCCTTC
T ss_pred             cCC--CCEEEECCCCCCC--CccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCE-EEEEcchhhccCCCcc
Confidence            875  5599999999865  3488999999999999999999999999999999887777 9999999999887754

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=99.96  E-value=1.2e-28  Score=194.41  Aligned_cols=150  Identities=21%  Similarity=0.261  Sum_probs=132.0

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      .+++++||+++||||++|||+++|++|+++|++|++++|+.+++++..++++..  +.++..+.+|++|.  +++.++++
T Consensus         6 ~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~   83 (256)
T 3gaf_A            6 SPFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA--GGKAIGLECNVTDEQHREAVIKAA   83 (256)
T ss_dssp             CTTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHH
Confidence            356788999999999999999999999999999999999999999988888764  56788899999985  35667888


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+.++++  |++|||||+....  ++ +.+.++|++++++|+.|++.++++++|+|++++.|+ ||++||.++..+.|..
T Consensus        84 ~~~~g~i--d~lv~nAg~~~~~--~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  157 (256)
T 3gaf_A           84 LDQFGKI--TVLVNNAGGGGPK--PF-DMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGA-ILNISSMAGENTNVRM  157 (256)
T ss_dssp             HHHHSCC--CEEEECCCCCCCC--CT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEE-EEEECCGGGTCCCTTC
T ss_pred             HHHcCCC--CEEEECCCCCCCC--CC-CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcE-EEEEcCHHHcCCCCCc
Confidence            8888864  5999999987653  46 889999999999999999999999999999887777 9999999999888754

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.96  E-value=1.6e-28  Score=194.27  Aligned_cols=151  Identities=23%  Similarity=0.287  Sum_probs=131.5

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      +.++++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++++. +..++..+.+|++|.  +++.++++
T Consensus         4 ~m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~   82 (262)
T 3pk0_A            4 SMFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQL-GSGKVIGVQTDVSDRAQCDALAGRA   82 (262)
T ss_dssp             CTTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-SSSCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh-CCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            345678999999999999999999999999999999999999999988888764 236788999999985  36667888


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc-ccccC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM-CSVRF  203 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~-~~~~~  203 (206)
                      .+++++  +|++|||||+...  .++.+.+.++|++++++|+.|+++++++++|+|++++.|+ ||++||..+. .+.|.
T Consensus        83 ~~~~g~--id~lvnnAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~-iv~isS~~~~~~~~~~  157 (262)
T 3pk0_A           83 VEEFGG--IDVVCANAGVFPD--APLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGR-VVLTSSITGPITGYPG  157 (262)
T ss_dssp             HHHHSC--CSEEEECCCCCCC--CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCE-EEEECCSBTTTBCCTT
T ss_pred             HHHhCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcE-EEEEechhhccCCCCC
Confidence            888886  4599999998765  4588999999999999999999999999999999888787 9999999886 55554

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=99.96  E-value=2e-28  Score=193.91  Aligned_cols=147  Identities=23%  Similarity=0.332  Sum_probs=130.4

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +.+|+++||||++|||+++|++|+++|++|++++|+.++++++.++++..  +.++..+.+|++|.  +++.++++.+.+
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA--GGTALAQVLDVTDRHSVAAFAQAAVDTW   79 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999999999999999999999999888774  56788899999985  356677888888


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.++..+.|..
T Consensus        80 g~i--D~lVnnAG~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~-IV~isS~~~~~~~~~~  150 (264)
T 3tfo_A           80 GRI--DVLVNNAGVMPL--SPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQ-IINIGSIGALSVVPTA  150 (264)
T ss_dssp             SCC--CEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTCCCTTC
T ss_pred             CCC--CEEEECCCCCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeE-EEEEcCHHHcccCCCC
Confidence            864  499999999765  4588999999999999999999999999999999887777 9999999999888754

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=99.96  E-value=1.5e-28  Score=193.29  Aligned_cols=148  Identities=18%  Similarity=0.163  Sum_probs=129.3

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++++.  +.++..+.+|++|.  +++.++.+.+
T Consensus         3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (252)
T 3h7a_A            3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA--GGRIVARSLDARNEDEVTAFLNAADA   80 (252)
T ss_dssp             --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECcCCCHHHHHHHHHHHHh
Confidence            4567999999999999999999999999999999999999999999998774  56889999999985  2555666666


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      . +  ++|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.++..+.|+.
T Consensus        81 ~-g--~id~lv~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  152 (252)
T 3h7a_A           81 H-A--PLEVTIFNVGANVN--FPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGK-IFFTGATASLRGGSGF  152 (252)
T ss_dssp             H-S--CEEEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEEEEGGGTCCCTTC
T ss_pred             h-C--CceEEEECCCcCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcE-EEEECCHHHcCCCCCC
Confidence            6 5  46799999999865  4588999999999999999999999999999999887777 9999999999888754

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=99.96  E-value=5e-28  Score=191.78  Aligned_cols=151  Identities=32%  Similarity=0.477  Sum_probs=131.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~  126 (206)
                      ++++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++.+.. +.++..+.+|++|..  ++.++++.+
T Consensus        16 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~   94 (266)
T 4egf_A           16 LRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELARRAAE   94 (266)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999888887632 567889999999863  677788888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .++++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.+++||++||..+..+.|.+
T Consensus        95 ~~g~i--d~lv~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~  168 (266)
T 4egf_A           95 AFGGL--DVLVNNAGISHP--QPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLPDH  168 (266)
T ss_dssp             HHTSC--SEEEEECCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTC
T ss_pred             HcCCC--CEEEECCCcCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCCCCC
Confidence            88864  599999999865  458899999999999999999999999999999887644349999999999888754

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=99.96  E-value=6.4e-28  Score=189.69  Aligned_cols=152  Identities=25%  Similarity=0.327  Sum_probs=128.9

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEec--CCC--chHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF--SGD--LDEGVER  123 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~--~~~~~~~  123 (206)
                      ...++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++.+.+ +.++..+.+|+  ++.  +++.++.
T Consensus         7 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~   85 (252)
T 3f1l_A            7 QDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET-GRQPQWFILDLLTCTSENCQQLAQR   85 (252)
T ss_dssp             TTTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SCCCEEEECCTTTCCHHHHHHHHHH
T ss_pred             ccccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCCceEEEEecccCCHHHHHHHHHH
Confidence            345789999999999999999999999999999999999999999888887654 33567788898  553  2455677


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +.+.+++  +|++|||||+.... .++.+.+.++|++++++|+.|++.++++++|+|++++.|+ ||++||..+..+.|.
T Consensus        86 ~~~~~g~--id~lv~nAg~~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~-iv~isS~~~~~~~~~  161 (252)
T 3f1l_A           86 IAVNYPR--LDGVLHNAGLLGDV-CPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGS-LVFTSSSVGRQGRAN  161 (252)
T ss_dssp             HHHHCSC--CSEEEECCCCCCCC-SCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCE-EEEECCGGGTSCCTT
T ss_pred             HHHhCCC--CCEEEECCccCCCC-CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCE-EEEECChhhccCCCC
Confidence            7777775  55999999986432 4588999999999999999999999999999999888777 999999999988775


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      .
T Consensus       162 ~  162 (252)
T 3f1l_A          162 W  162 (252)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=99.96  E-value=2.9e-28  Score=191.31  Aligned_cols=146  Identities=23%  Similarity=0.420  Sum_probs=127.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++..     ....+.+|++|.  +++.++++.+
T Consensus         5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~~   79 (248)
T 3op4_A            5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD-----NGKGMALNVTNPESIEAVLKAITD   79 (248)
T ss_dssp             TCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-----cceEEEEeCCCHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999988888777643     357789999985  3667788888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .++++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|+|++++.|+ ||++||.++..+.|.+
T Consensus        80 ~~g~i--D~lv~nAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~-iv~isS~~~~~~~~~~  152 (248)
T 3op4_A           80 EFGGV--DILVNNAGITRD--NLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGR-IINVGSVVGTMGNAGQ  152 (248)
T ss_dssp             HHCCC--SEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCHHHHHCCTTC
T ss_pred             HcCCC--CEEEECCCCCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCE-EEEEcchhhcCCCCCC
Confidence            88864  599999999865  4588999999999999999999999999999999888777 9999999998887754

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=99.96  E-value=7.1e-28  Score=192.18  Aligned_cols=149  Identities=27%  Similarity=0.398  Sum_probs=128.6

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC------------hhhHHHHHHHHHHhcCCceEEEEEEecCCC
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN------------PDKLKDVSDSIQAKYAKTQIKSVVVDFSGD  116 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (206)
                      .+++||+++||||++|||+++|++|+++|++|++++|+            .+.+++..++++..  +.++..+.+|++|.
T Consensus         6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~   83 (281)
T 3s55_A            6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKT--GRRCISAKVDVKDR   83 (281)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCH
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhc--CCeEEEEeCCCCCH
Confidence            35779999999999999999999999999999999997            55666666666653  56788999999985


Q ss_pred             --chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          117 --LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       117 --~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                        +++.++++.+.++++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||
T Consensus        84 ~~v~~~~~~~~~~~g~i--d~lv~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~-iv~isS  158 (281)
T 3s55_A           84 AALESFVAEAEDTLGGI--DIAITNAGISTI--ALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGR-IVTVSS  158 (281)
T ss_dssp             HHHHHHHHHHHHHHTCC--CEEEECCCCCCC--CCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECC
T ss_pred             HHHHHHHHHHHHhcCCC--CEEEECCCCCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCE-EEEECC
Confidence              366778888888864  599999998865  4588999999999999999999999999999999888777 999999


Q ss_pred             ccccccccCC
Q 028656          195 AELMCSVRFH  204 (206)
Q Consensus       195 ~~~~~~~~~~  204 (206)
                      ..+..+.|..
T Consensus       159 ~~~~~~~~~~  168 (281)
T 3s55_A          159 MLGHSANFAQ  168 (281)
T ss_dssp             GGGGSCCTTC
T ss_pred             hhhcCCCCCC
Confidence            9999887754

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=99.96  E-value=9.2e-28  Score=190.20  Aligned_cols=153  Identities=20%  Similarity=0.275  Sum_probs=130.2

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      ..++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++.+..++.++..+.+|++|.  +++.++++.
T Consensus         8 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   87 (267)
T 1iy8_A            8 TTRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT   87 (267)
T ss_dssp             --CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            345779999999999999999999999999999999999998888888887654456788899999985  356667777


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +.+++  +|++|||||+.... .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+..+.|..
T Consensus        88 ~~~g~--id~lv~nAg~~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  162 (267)
T 1iy8_A           88 ERFGR--IDGFFNNAGIEGKQ-NPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGM-VVNTASVGGIRGIGNQ  162 (267)
T ss_dssp             HHHSC--CSEEEECCCCCCCC-BCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE-EEEECCGGGTSBCSSB
T ss_pred             HHcCC--CCEEEECCCcCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCE-EEEEcchhhccCCCCC
Confidence            78886  55999999987541 3478899999999999999999999999999998887777 9999999998877643

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=99.96  E-value=2.6e-28  Score=193.99  Aligned_cols=149  Identities=23%  Similarity=0.374  Sum_probs=131.5

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++++||+++||||++|||+++|++|+++|++|++++|+.+++++..++++..  +.++..+.+|++|.  +++.++++.+
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~   99 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNV--GHDAEAVAFDVTSESEIIEAFARLDE   99 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT--TCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999888764  55688899999985  3566677777


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+..+.|..
T Consensus       100 ~~g~--iD~lv~nAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~-iV~isS~~~~~~~~~~  172 (271)
T 4ibo_A          100 QGID--VDILVNNAGIQFR--KPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGK-IVNIGSLTSELARATV  172 (271)
T ss_dssp             HTCC--CCEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSBCTTC
T ss_pred             HCCC--CCEEEECCCCCCC--CCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcE-EEEEccHHhCCCCCCc
Confidence            7776  5599999998765  4588999999999999999999999999999999887777 9999999999887754

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=99.96  E-value=3.6e-28  Score=193.09  Aligned_cols=149  Identities=21%  Similarity=0.309  Sum_probs=130.7

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      .++++|+++||||++|||+++|++|+++|++|++++|+.++++++.++++..  +.++..+.+|++|.  +++.++++.+
T Consensus        24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~  101 (270)
T 3ftp_A           24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA--GLEGRGAVLNVNDATAVDALVESTLK  101 (270)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH--TCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEEeCCCHHHHHHHHHHHHH
Confidence            3478999999999999999999999999999999999999999988888775  44567888999985  3667788888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .++++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.++..+.|..
T Consensus       102 ~~g~i--D~lvnnAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  174 (270)
T 3ftp_A          102 EFGAL--NVLVNNAGITQD--QLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGR-IVNITSVVGSAGNPGQ  174 (270)
T ss_dssp             HHSCC--CEEEECCCCCCC--BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCHHHHHCCTTB
T ss_pred             HcCCC--CEEEECCCCCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCE-EEEECchhhCCCCCCc
Confidence            88865  599999998865  3488999999999999999999999999999999887777 9999999998887754

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=99.96  E-value=5.8e-28  Score=192.91  Aligned_cols=152  Identities=24%  Similarity=0.356  Sum_probs=126.7

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      +.+++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++.+.+ +..+..+.+|++|.  +++.++.+.
T Consensus        28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~  106 (281)
T 4dry_A           28 KGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT-GNIVRAVVCDVGDPDQVAALFAAVR  106 (281)
T ss_dssp             ------CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            445789999999999999999999999999999999999999999888887653 34468899999985  366778888


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC--CCceEEEeccccccccccC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK--KGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~~iv~isS~~~~~~~~~  203 (206)
                      +.++++  |++|||||+... ..++.+.+.|+|++++++|+.|++.++++++|.|++++  .|+ ||++||.++..+.|.
T Consensus       107 ~~~g~i--D~lvnnAG~~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~-IV~isS~~~~~~~~~  182 (281)
T 4dry_A          107 AEFARL--DLLVNNAGSNVP-PVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGR-IINNGSISAQTPRPN  182 (281)
T ss_dssp             HHHSCC--SEEEECCCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEE-EEEECCGGGTCCCTT
T ss_pred             HHcCCC--CEEEECCCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcE-EEEECCHHhCCCCCC
Confidence            888864  599999998754 24588999999999999999999999999999998875  455 999999999988875


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      .
T Consensus       183 ~  183 (281)
T 4dry_A          183 S  183 (281)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=99.96  E-value=7.6e-28  Score=191.87  Aligned_cols=147  Identities=24%  Similarity=0.304  Sum_probs=128.1

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++     +.++..+.+|++|.  +++.++++.
T Consensus        22 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~   96 (277)
T 4dqx_A           22 SMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI-----GSKAFGVRVDVSSAKDAESMVEKTT   96 (277)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999998888777664     45678899999985  366678888


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +.++++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.++..+.|..
T Consensus        97 ~~~g~i--D~lv~nAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  170 (277)
T 4dqx_A           97 AKWGRV--DVLVNNAGFGTT--GNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGS-IINTTSYTATSAIADR  170 (277)
T ss_dssp             HHHSCC--CEEEECCCCCCC--BCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEE-EEEECCGGGTSCCTTB
T ss_pred             HHcCCC--CEEEECCCcCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcE-EEEECchhhCcCCCCC
Confidence            888864  599999998765  4588999999999999999999999999999998877777 9999999999887754

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=99.96  E-value=1.2e-27  Score=190.48  Aligned_cols=150  Identities=25%  Similarity=0.396  Sum_probs=128.5

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-------------ChhhHHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-------------NPDKLKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      .+++||+++||||++|||+++|++|+++|++|++++|             +.+++++..+++...  +.++..+.+|++|
T Consensus         7 ~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~   84 (277)
T 3tsc_A            7 GKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA--NRRIVAAVVDTRD   84 (277)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTC
T ss_pred             cccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCC
Confidence            3577999999999999999999999999999999998             567777777777663  5678899999998


Q ss_pred             C--chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEec
Q 028656          116 D--LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG  193 (206)
Q Consensus       116 ~--~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~is  193 (206)
                      .  +++.++++.+.++++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|+|++++.+.+||++|
T Consensus        85 ~~~v~~~~~~~~~~~g~i--d~lvnnAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~is  160 (277)
T 3tsc_A           85 FDRLRKVVDDGVAALGRL--DIIVANAGVAAP--QAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILIS  160 (277)
T ss_dssp             HHHHHHHHHHHHHHHSCC--CEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHcCCC--CEEEECCCCCCC--CChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            5  366677888888864  599999999865  4588999999999999999999999999999998876433499999


Q ss_pred             cccccccccCC
Q 028656          194 KAELMCSVRFH  204 (206)
Q Consensus       194 S~~~~~~~~~~  204 (206)
                      |.++..+.|..
T Consensus       161 S~~~~~~~~~~  171 (277)
T 3tsc_A          161 SAAGMKMQPFM  171 (277)
T ss_dssp             CGGGTSCCSSC
T ss_pred             cHhhCCCCCCc
Confidence            99999888754

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.2e-28  Score=194.98  Aligned_cols=151  Identities=21%  Similarity=0.365  Sum_probs=131.7

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC---cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL---NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERI  124 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~  124 (206)
                      +++||+++||||++|||+++|++|+++|+   +|++++|+.++++++.+++...+++.++..+.+|++|..  ++.++++
T Consensus        30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~  109 (287)
T 3rku_A           30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENL  109 (287)
T ss_dssp             HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTS
T ss_pred             hcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence            46799999999999999999999999998   999999999999999999988766788999999999862  4555666


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+.+++  +|++|||||+... ..++.+.+.|+|++++++|+.|++.++++++|.|++++.|+ ||++||.++..+.|..
T Consensus       110 ~~~~g~--iD~lVnnAG~~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~-IV~isS~~~~~~~~~~  185 (287)
T 3rku_A          110 PQEFKD--IDILVNNAGKALG-SDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGD-IVNLGSIAGRDAYPTG  185 (287)
T ss_dssp             CGGGCS--CCEEEECCCCCCC-CCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE-EEEECCGGGTSCCTTC
T ss_pred             HHhcCC--CCEEEECCCcCCC-CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCe-EEEECChhhcCCCCCC
Confidence            666665  5599999998753 24588999999999999999999999999999999888787 9999999999888754

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=99.96  E-value=7.2e-28  Score=189.91  Aligned_cols=148  Identities=23%  Similarity=0.302  Sum_probs=128.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++++.  +.++..+.+|++|.  +++.++++.+.
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF--PGQILTVQMDVRNTDDIQKMIEQIDEK   80 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCS--TTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            356999999999999999999999999999999999999999888887653  45788999999985  36677888888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++ .|+ ||++||..+..+.|..
T Consensus        81 ~g~i--d~lv~nAg~~~~--~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  153 (257)
T 3imf_A           81 FGRI--DILINNAAGNFI--CPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGN-IINMVATYAWDAGPGV  153 (257)
T ss_dssp             HSCC--CEEEECCCCCCC--CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCE-EEEECCGGGGSCCTTC
T ss_pred             cCCC--CEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcE-EEEECchhhccCCCCc
Confidence            8864  599999998765  4588999999999999999999999999999996554 565 9999999999887754

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=99.96  E-value=8.4e-28  Score=190.96  Aligned_cols=148  Identities=20%  Similarity=0.285  Sum_probs=128.7

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      .+++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++     +.++..+.+|++|.  +++.++.+.+
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (271)
T 3tzq_B            7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV-----GRGAVHHVVDLTNEVSVRALIDFTID   81 (271)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH-----CTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCCeEEEECCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999988877766     34567888999985  3667788888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .++++  |++|||||+......++.+.+.++|++++++|+.|++.++++++|+|++++.|+ ||++||..+..+.|..
T Consensus        82 ~~g~i--d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~-iv~isS~~~~~~~~~~  156 (271)
T 3tzq_B           82 TFGRL--DIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGA-IVNISSATAHAAYDMS  156 (271)
T ss_dssp             HHSCC--CEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE-EEEECCGGGTSBCSSC
T ss_pred             HcCCC--CEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCE-EEEECCHHHcCCCCCC
Confidence            88865  499999998754345688999999999999999999999999999999888777 9999999999887754

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.96  E-value=1.3e-27  Score=190.57  Aligned_cols=149  Identities=23%  Similarity=0.338  Sum_probs=128.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-------------ChhhHHHHHHHHHHhcCCceEEEEEEecCCC
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-------------NPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD  116 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|             +.+++++..++++..  +.++..+.+|++|.
T Consensus        12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~   89 (280)
T 3pgx_A           12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ--GRKALTRVLDVRDD   89 (280)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT--TCCEEEEECCTTCH
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEEcCCCCH
Confidence            477999999999999999999999999999999998             677788887777663  56788899999985


Q ss_pred             --chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          117 --LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       117 --~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                        +++.++++.+.++++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|+|++++.+++||++||
T Consensus        90 ~~v~~~~~~~~~~~g~i--d~lvnnAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  165 (280)
T 3pgx_A           90 AALRELVADGMEQFGRL--DVVVANAGVLSW--GRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSS  165 (280)
T ss_dssp             HHHHHHHHHHHHHHCCC--CEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCC--CEEEECCCCCCC--CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence              366777888888864  599999999865  45889999999999999999999999999999988763334999999


Q ss_pred             ccccccccCC
Q 028656          195 AELMCSVRFH  204 (206)
Q Consensus       195 ~~~~~~~~~~  204 (206)
                      ..+..+.|..
T Consensus       166 ~~~~~~~~~~  175 (280)
T 3pgx_A          166 SAGLKATPGN  175 (280)
T ss_dssp             GGGTSCCTTB
T ss_pred             hhhccCCCCc
Confidence            9999888754

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=99.96  E-value=3.4e-28  Score=193.70  Aligned_cols=149  Identities=26%  Similarity=0.320  Sum_probs=129.1

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~  125 (206)
                      .++++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++...  +.++..+.+|+++..  ++.++.+.
T Consensus        28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~  105 (275)
T 4imr_A           28 IFGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIAS--GGTAQELAGDLSEAGAGTDLIERAE  105 (275)
T ss_dssp             HHCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHT--TCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEecCCCHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999888888764  567888999999863  45556665


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +. ++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+..+.+..
T Consensus       106 ~~-g~--iD~lvnnAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~-Iv~isS~~~~~~~~~~  178 (275)
T 4imr_A          106 AI-AP--VDILVINASAQIN--ATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGR-VVSIGSINQLRPKSVV  178 (275)
T ss_dssp             HH-SC--CCEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCTTB
T ss_pred             Hh-CC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcE-EEEECCHHhCCCCCCc
Confidence            55 54  6699999998765  4588999999999999999999999999999999887777 9999999998877755

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=3.9e-28  Score=190.77  Aligned_cols=149  Identities=21%  Similarity=0.311  Sum_probs=123.0

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCC-ceEEEEEEecCCC--chHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAK-TQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      +++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++...+++ .++..+.+|++|.  +++.++++.
T Consensus         3 ~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   82 (250)
T 3nyw_A            3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH   82 (250)
T ss_dssp             --CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHH
Confidence            4567999999999999999999999999999999999999999999988776444 6788999999985  356677788


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +.+++  +|++|||||+....  ++ +.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.++..+.+.
T Consensus        83 ~~~g~--iD~lvnnAg~~~~~--~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~  154 (250)
T 3nyw_A           83 QKYGA--VDILVNAAAMFMDG--SL-SEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGY-IFNVASRAAKYGFAD  154 (250)
T ss_dssp             HHHCC--EEEEEECCCCCCCC--CC-SCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECC-------CC
T ss_pred             HhcCC--CCEEEECCCcCCCC--CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeE-EEEEccHHhcCCCCC
Confidence            88885  66999999997653  35 778999999999999999999999999998887777 999999999885553

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=99.96  E-value=7.8e-28  Score=191.00  Aligned_cols=150  Identities=24%  Similarity=0.308  Sum_probs=130.0

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-ChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      .+++++|+++||||++|||+++|++|+++|++|++++| +.+..+++.++++..  +.++..+.+|++|.  +++.++++
T Consensus        23 ~~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~v~~~~~~~  100 (269)
T 4dmm_A           23 ALPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA--GGEAFAVKADVSQESEVEALFAAV  100 (269)
T ss_dssp             -CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHH
Confidence            35678999999999999999999999999999999998 667788888887764  56788899999985  36677888


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+.++++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.++..+.|..
T Consensus       101 ~~~~g~i--d~lv~nAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  175 (269)
T 4dmm_A          101 IERWGRL--DVLVNNAGITRD--TLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGR-IINIASVVGEMGNPGQ  175 (269)
T ss_dssp             HHHHSCC--CEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE-EEEECCHHHHHCCTTC
T ss_pred             HHHcCCC--CEEEECCCCCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcE-EEEECchhhcCCCCCc
Confidence            8888864  599999999865  4488999999999999999999999999999999888787 9999999998887754

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=99.96  E-value=9e-28  Score=191.99  Aligned_cols=149  Identities=22%  Similarity=0.324  Sum_probs=127.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++...  +.++..+.+|++|.  +++.++++.+
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~  101 (283)
T 3v8b_A           24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGA--GGQAIALEADVSDELQMRNAVRDLVL  101 (283)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4577999999999999999999999999999999999999999988888653  56788999999985  3677788888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc--cccC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC--SVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~--~~~~  203 (206)
                      .++++|  ++|||||+... ..++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.++..  +.|.
T Consensus       102 ~~g~iD--~lVnnAg~~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~-Iv~isS~~~~~~~~~~~  176 (283)
T 3v8b_A          102 KFGHLD--IVVANAGINGV-WAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGA-IVVVSSINGTRTFTTPG  176 (283)
T ss_dssp             HHSCCC--EEEECCCCCCC-BCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCSBTTTBCCSTT
T ss_pred             HhCCCC--EEEECCCCCCC-CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCce-EEEEcChhhccCCCCCC
Confidence            888654  99999998643 24588999999999999999999999999999999887777 99999999877  4443

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=99.96  E-value=1.3e-27  Score=191.24  Aligned_cols=147  Identities=21%  Similarity=0.316  Sum_probs=127.2

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh-------hHHHHHHHHHHhcCCceEEEEEEecCCC--ch
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD-------KLKDVSDSIQAKYAKTQIKSVVVDFSGD--LD  118 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~  118 (206)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+.+       .+++..+++...  +.++..+.+|++|.  ++
T Consensus         4 ~m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~   81 (285)
T 3sc4_A            4 SMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEA--GGQALPIVGDIRDGDAVA   81 (285)
T ss_dssp             --CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHH--TSEEEEEECCTTSHHHHH
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHH
Confidence            46678999999999999999999999999999999999976       567777777664  56789999999985  36


Q ss_pred             HHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          119 EGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       119 ~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      +.++++.+.+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+.
T Consensus        82 ~~~~~~~~~~g~--id~lvnnAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~-iv~isS~~~~  156 (285)
T 3sc4_A           82 AAVAKTVEQFGG--IDICVNNASAINL--GSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPH-ILTLSPPIRL  156 (285)
T ss_dssp             HHHHHHHHHHSC--CSEEEECCCCCCC--CCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCE-EEECCCCCCC
T ss_pred             HHHHHHHHHcCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcE-EEEECChhhc
Confidence            677888888886  4599999999865  4588999999999999999999999999999998887777 9999999988


Q ss_pred             ccc
Q 028656          199 CSV  201 (206)
Q Consensus       199 ~~~  201 (206)
                      .+.
T Consensus       157 ~~~  159 (285)
T 3sc4_A          157 EPK  159 (285)
T ss_dssp             SGG
T ss_pred             cCC
Confidence            775

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=99.96  E-value=1.8e-27  Score=186.56  Aligned_cols=146  Identities=28%  Similarity=0.445  Sum_probs=127.3

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.++++++.+++...  +.++..+.+|++|.  +++.++++.+.+
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAA--GAKVHVLELDVADRQGVDAAVASTVEAL   82 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            56999999999999999999999999999999999999988888888763  45688899999985  356667777788


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++ |+ ||++||.++..+.|.+
T Consensus        83 g~--id~lv~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~-iv~isS~~~~~~~~~~  152 (247)
T 2jah_A           83 GG--LDILVNNAGIMLL--GPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GT-VVQMSSIAGRVNVRNA  152 (247)
T ss_dssp             SC--CSEEEECCCCCCC--CCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CE-EEEECCGGGTCCCTTC
T ss_pred             CC--CCEEEECCCCCCC--CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CE-EEEEccHHhcCCCCCC
Confidence            86  4599999998754  4588999999999999999999999999999998776 77 9999999998887754

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=99.96  E-value=1.1e-27  Score=191.13  Aligned_cols=153  Identities=25%  Similarity=0.314  Sum_probs=131.2

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcC-CceEEEEEEecCCC--chHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYA-KTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      ++++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++++.+. ..++.++.+|++|.  +++.++++
T Consensus         6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   85 (281)
T 3svt_A            6 QLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAV   85 (281)
T ss_dssp             --CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999888876532 23788999999985  36677888


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+.++++  |++|||||+... ..++.+.+.++|++++++|+.|+++++++++|.|++++.|+ ||++||.++..+.|.+
T Consensus        86 ~~~~g~i--d~lv~nAg~~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  161 (281)
T 3svt_A           86 TAWHGRL--HGVVHCAGGSEN-IGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGS-FVGISSIAASNTHRWF  161 (281)
T ss_dssp             HHHHSCC--CEEEECCCCCCC-CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE-EEEECCHHHHSCCTTC
T ss_pred             HHHcCCC--CEEEECCCcCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcE-EEEEeCHHHcCCCCCC
Confidence            8888864  599999998443 24588999999999999999999999999999999887777 9999999998887754

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=99.96  E-value=2.5e-27  Score=190.72  Aligned_cols=151  Identities=20%  Similarity=0.319  Sum_probs=128.7

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC------------hhhHHHHHHHHHHhcCCceEEEEEEecCCC
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN------------PDKLKDVSDSIQAKYAKTQIKSVVVDFSGD  116 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (206)
                      .+++||+++||||++|||+++|++|+++|++|++++|+            .+++++..++++..  +.++..+.+|++|.
T Consensus        24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~  101 (299)
T 3t7c_A           24 GKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL--GRRIIASQVDVRDF  101 (299)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCH
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhc--CCceEEEECCCCCH
Confidence            34789999999999999999999999999999999987            66777777777664  56788999999985


Q ss_pred             --chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          117 --LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       117 --~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                        +++.++++.+.++++  |++|||||+.... .++.+.+.++|++++++|+.|++.++++++|.|++++.+++||++||
T Consensus       102 ~~v~~~~~~~~~~~g~i--D~lv~nAg~~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS  178 (299)
T 3t7c_A          102 DAMQAAVDDGVTQLGRL--DIVLANAALASEG-TRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSS  178 (299)
T ss_dssp             HHHHHHHHHHHHHHSCC--CEEEECCCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECC
T ss_pred             HHHHHHHHHHHHHhCCC--CEEEECCCCCCCC-CchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence              366778888888865  5999999987653 34788999999999999999999999999999988764444999999


Q ss_pred             ccccccccCC
Q 028656          195 AELMCSVRFH  204 (206)
Q Consensus       195 ~~~~~~~~~~  204 (206)
                      .++..+.|..
T Consensus       179 ~~~~~~~~~~  188 (299)
T 3t7c_A          179 IGGLRGAENI  188 (299)
T ss_dssp             GGGTSCCTTC
T ss_pred             hhhccCCCCc
Confidence            9999888754

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=99.96  E-value=6.7e-28  Score=190.15  Aligned_cols=154  Identities=19%  Similarity=0.249  Sum_probs=126.9

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHH---CCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAK---TGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      ++++|+++||||++|||++++++|++   +|++|++++|+.++++++.+++...+++.++..+.+|+++.  +++.++.+
T Consensus         3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   82 (259)
T 1oaa_A            3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHH
Confidence            45699999999999999999999999   89999999999999998888887765567889999999985  23444555


Q ss_pred             HH--HhcCCCccEEEEeccccCCccccccc-CCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC--CCCceEEEeccccccc
Q 028656          125 KE--AIEGLDVGVLINNVGISYPYARFFHE-VDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR--KKGLSMLNIGKAELMC  199 (206)
Q Consensus       125 ~~--~~~~~~id~lvnnAg~~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~~iv~isS~~~~~  199 (206)
                      .+  .++++|+|++|||||+......++.+ .+.++|++++++|+.|++.++++++|.|+++  +.|+ ||++||.++..
T Consensus        83 ~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~-iv~isS~~~~~  161 (259)
T 1oaa_A           83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKT-VVNISSLCALQ  161 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEE-EEEECCGGGTS
T ss_pred             HhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCce-EEEEcCchhcC
Confidence            54  33444555999999986542234777 7899999999999999999999999999776  4466 99999999998


Q ss_pred             cccCC
Q 028656          200 SVRFH  204 (206)
Q Consensus       200 ~~~~~  204 (206)
                      +.|..
T Consensus       162 ~~~~~  166 (259)
T 1oaa_A          162 PYKGW  166 (259)
T ss_dssp             CCTTC
T ss_pred             CCCCc
Confidence            87754

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=99.96  E-value=8.9e-28  Score=192.93  Aligned_cols=149  Identities=24%  Similarity=0.313  Sum_probs=130.3

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++.+.+ ..++..+.+|++|.  +++.++++.+
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~  115 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVVD  115 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999888886642 35788999999985  3567788888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc-ccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM-CSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~-~~~~~  203 (206)
                      .++++|  ++|||||+...  .++.+.+.++|++.+++|+.|+++++++++|.|++++.|+ ||++||..+. .+.|.
T Consensus       116 ~~g~iD--~lvnnAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~-iV~isS~~~~~~~~~~  188 (293)
T 3rih_A          116 AFGALD--VVCANAGIFPE--ARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGR-VILTSSITGPVTGYPG  188 (293)
T ss_dssp             HHSCCC--EEEECCCCCCC--CCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCE-EEEECCSBTTTBBCTT
T ss_pred             HcCCCC--EEEECCCCCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCE-EEEEeChhhccCCCCC
Confidence            888655  99999999865  4588999999999999999999999999999999888888 9999999886 66554

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.2e-27  Score=190.39  Aligned_cols=145  Identities=20%  Similarity=0.328  Sum_probs=125.9

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh-------HHHHHHHHHHhcCCceEEEEEEecCCC--chH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK-------LKDVSDSIQAKYAKTQIKSVVVDFSGD--LDE  119 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~  119 (206)
                      ++++||+++||||++|||+++|++|+++|++|++++|+.++       +++..+++...  +.++..+.+|++|.  +++
T Consensus         2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~   79 (274)
T 3e03_A            2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAA--GGQGLALKCDIREEDQVRA   79 (274)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHH--TSEEEEEECCTTCHHHHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHH
Confidence            46789999999999999999999999999999999999754       66666666654  56788999999985  356


Q ss_pred             HHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          120 GVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       120 ~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      .++++.+.++++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|+|++++.|+ ||++||..+..
T Consensus        80 ~~~~~~~~~g~i--D~lvnnAG~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~-iv~isS~~~~~  154 (274)
T 3e03_A           80 AVAATVDTFGGI--DILVNNASAIWL--RGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPH-ILTLAPPPSLN  154 (274)
T ss_dssp             HHHHHHHHHSCC--CEEEECCCCCCC--CCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCE-EEECCCCCCCC
T ss_pred             HHHHHHHHcCCC--CEEEECCCcccC--CCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCce-EEEECChHhcC
Confidence            678888888864  599999999865  4588999999999999999999999999999998887777 99999999887


Q ss_pred             c
Q 028656          200 S  200 (206)
Q Consensus       200 ~  200 (206)
                      +
T Consensus       155 ~  155 (274)
T 3e03_A          155 P  155 (274)
T ss_dssp             H
T ss_pred             C
Confidence            7

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=99.95  E-value=2.1e-27  Score=189.85  Aligned_cols=151  Identities=24%  Similarity=0.352  Sum_probs=128.1

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC----------------hhhHHHHHHHHHHhcCCceEEEEEEe
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN----------------PDKLKDVSDSIQAKYAKTQIKSVVVD  112 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~----------------~~~~~~~~~~~~~~~~~~~~~~~~~d  112 (206)
                      .+++||+++||||++|||+++|++|+++|++|++++|+                .+++++..+++...  +.++..+.+|
T Consensus         7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D   84 (286)
T 3uve_A            7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH--NRRIVTAEVD   84 (286)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT--TCCEEEEECC
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhc--CCceEEEEcC
Confidence            45789999999999999999999999999999999987                66677777776653  5678899999


Q ss_pred             cCCC--chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEE
Q 028656          113 FSGD--LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSML  190 (206)
Q Consensus       113 ~~~~--~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv  190 (206)
                      ++|.  +++.++++.+.++++  |++|||||+.... .++.+.+.++|++++++|+.|++.++++++|+|++++.+++||
T Consensus        85 v~~~~~v~~~~~~~~~~~g~i--d~lv~nAg~~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv  161 (286)
T 3uve_A           85 VRDYDALKAAVDSGVEQLGRL--DIIVANAGIGNGG-DTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSII  161 (286)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCC--CEEEECCCCCCCC-SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCCC--CEEEECCcccCCC-CccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEE
Confidence            9985  366778888888864  5999999987642 3478899999999999999999999999999998876433499


Q ss_pred             EeccccccccccCC
Q 028656          191 NIGKAELMCSVRFH  204 (206)
Q Consensus       191 ~isS~~~~~~~~~~  204 (206)
                      ++||..+..+.|..
T Consensus       162 ~isS~~~~~~~~~~  175 (286)
T 3uve_A          162 LTSSVGGLKAYPHT  175 (286)
T ss_dssp             EECCGGGTSCCTTC
T ss_pred             EECchhhccCCCCc
Confidence            99999999888754

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=99.95  E-value=1.5e-27  Score=190.48  Aligned_cols=150  Identities=23%  Similarity=0.331  Sum_probs=120.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-ChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++++|+++||||++|||+++|++|+++|++|++++| +.+++++..+++...  +.++.++.+|++|.  +++.++++.+
T Consensus        26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~  103 (280)
T 4da9_A           26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGL--GARVIFLRADLADLSSHQATVDAVVA  103 (280)
T ss_dssp             CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHT--TCCEEEEECCTTSGGGHHHHHHHHHH
T ss_pred             ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            467999999999999999999999999999999995 777888888888764  56788999999985  3677788888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC---CCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK---KGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---~g~~iv~isS~~~~~~~~~  203 (206)
                      .++++  |++|||||+......++.+.+.++|++++++|+.|++.++++++|.|++++   .|+ ||++||.++..+.|.
T Consensus       104 ~~g~i--D~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~-Iv~isS~~~~~~~~~  180 (280)
T 4da9_A          104 EFGRI--DCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRS-IINITSVSAVMTSPE  180 (280)
T ss_dssp             HHSCC--CEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEE-EEEECCC-------C
T ss_pred             HcCCC--CEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCE-EEEEcchhhccCCCC
Confidence            88865  599999998543335688999999999999999999999999999998765   455 999999999988775


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      .
T Consensus       181 ~  181 (280)
T 4da9_A          181 R  181 (280)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=99.95  E-value=1.4e-27  Score=188.42  Aligned_cols=146  Identities=22%  Similarity=0.292  Sum_probs=128.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEE-EcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      ++|+++||||++|||+++|++|+++|++|+++ +|+.+++++..++++..  +.++..+.+|++|.  +++.++.+.+.+
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKL--GVKVLVVKANVGQPAKIKEMFQQIDETF   80 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            58999999999999999999999999999997 89999898888888763  56788999999985  366778888888


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.++..+.|..
T Consensus        81 g~i--d~lv~nAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~-iv~isS~~~~~~~~~~  151 (258)
T 3oid_A           81 GRL--DVFVNNAASGVL--RPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGH-IVSISSLGSIRYLENY  151 (258)
T ss_dssp             SCC--CEEEECCCCCCC--SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEE-EEEEEEGGGTSBCTTC
T ss_pred             CCC--CEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcE-EEEECchhhCCCCCCc
Confidence            864  599999998765  4588999999999999999999999999999999887777 9999999999887754

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=99.95  E-value=9.2e-28  Score=191.30  Aligned_cols=149  Identities=15%  Similarity=0.216  Sum_probs=130.2

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      .++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++.... +.++..+.+|+++.  +++.++++.+.
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~  102 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPPAVMAAVDQALKE  102 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            3789999999999999999999999999999999999999888888876543 56788999999985  35677888888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++  |++|||||+...  .++.+.+.++|++++++|+.|+++++++++|.|++++.|+ ||++||..+..+.|..
T Consensus       103 ~g~i--d~lv~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  174 (277)
T 4fc7_A          103 FGRI--DILINCAAGNFL--CPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGV-IVNITATLGNRGQALQ  174 (277)
T ss_dssp             HSCC--CEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEE-EEEECCSHHHHTCTTC
T ss_pred             cCCC--CEEEECCcCCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCE-EEEECchhhCCCCCCc
Confidence            8864  599999998765  4588999999999999999999999999999998877777 9999999998887754

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=99.95  E-value=1.3e-27  Score=190.52  Aligned_cols=146  Identities=23%  Similarity=0.281  Sum_probs=127.0

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      .+++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++     +.++..+.+|++|.  +++.++++.+
T Consensus        25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~~   99 (277)
T 3gvc_A           25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI-----GCGAAACRVDVSDEQQIIAMVDACVA   99 (277)
T ss_dssp             --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----CSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCcceEEEecCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999998888877665     44577889999985  3566788888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .++++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+..+.|..
T Consensus       100 ~~g~i--D~lvnnAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~-Iv~isS~~~~~~~~~~  172 (277)
T 3gvc_A          100 AFGGV--DKLVANAGVVHL--ASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGA-IVNLSSLAGQVAVGGT  172 (277)
T ss_dssp             HHSSC--CEEEECCCCCCC--BCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE-EEEECCGGGTSCCTTB
T ss_pred             HcCCC--CEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcE-EEEEcchhhccCCCCc
Confidence            88864  599999999865  4588999999999999999999999999999999888777 9999999999888754

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=99.95  E-value=7.8e-28  Score=188.69  Aligned_cols=145  Identities=28%  Similarity=0.374  Sum_probs=126.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++     +.++..+.+|++|.  +++.++++.+.
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-----GKKARAIAADISDPGSVKALFAEIQAL   77 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            367999999999999999999999999999999999999888877765     45678899999985  36677888888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|+|++++ .|+ ||++||..+..+.|.+
T Consensus        78 ~g~--id~lv~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  150 (247)
T 3rwb_A           78 TGG--IDILVNNASIVPF--VAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGR-VISIASNTFFAGTPNM  150 (247)
T ss_dssp             HSC--CSEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEE-EEEECCTHHHHTCTTC
T ss_pred             CCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcE-EEEECchhhccCCCCc
Confidence            886  4599999999865  4588999999999999999999999999999998876 455 9999999998887754

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=99.95  E-value=3.7e-27  Score=186.03  Aligned_cols=150  Identities=21%  Similarity=0.285  Sum_probs=128.9

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      .+++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++...  +.++..+.+|++|.  +++.++.+.
T Consensus         4 ~~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   81 (260)
T 2ae2_A            4 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMNTVA   81 (260)
T ss_dssp             TTCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999888888887663  45788899999985  356667777


Q ss_pred             HHh-cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          126 EAI-EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       126 ~~~-~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +.+ ++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+..+.|..
T Consensus        82 ~~~~g~--id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  156 (260)
T 2ae2_A           82 NHFHGK--LNILVNNAGIVIY--KEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGN-VVFISSVSGALAVPYE  156 (260)
T ss_dssp             HHTTTC--CCEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEE-EEEECCGGGTSCCTTC
T ss_pred             HHcCCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcE-EEEEcchhhccCCCCc
Confidence            777 54  5699999998754  3478899999999999999999999999999998877777 9999999998877643

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.95  E-value=3.6e-27  Score=186.97  Aligned_cols=152  Identities=23%  Similarity=0.315  Sum_probs=127.2

Q ss_pred             CcccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHH
Q 028656           46 AKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVER  123 (206)
Q Consensus        46 ~~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~  123 (206)
                      ++..++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++.... +.++..+.+|+++.  +++.+++
T Consensus        14 ~~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~   92 (267)
T 1vl8_A           14 KEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEA   92 (267)
T ss_dssp             ---CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCCHHHHHHHHHH
Confidence            44566889999999999999999999999999999999999998888887773322 45678889999975  3566677


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccc-cccccc
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE-LMCSVR  202 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~-~~~~~~  202 (206)
                      +.+.+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.+ +..+.|
T Consensus        93 ~~~~~g~--iD~lvnnAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~-iv~isS~~~~~~~~~  167 (267)
T 1vl8_A           93 VKEKFGK--LDTVVNAAGINRR--HPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPS-IINIGSLTVEEVTMP  167 (267)
T ss_dssp             HHHHHSC--CCEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCE-EEEECCGGGTCCCSS
T ss_pred             HHHHcCC--CCEEEECCCcCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcE-EEEECCcchhccCCC
Confidence            7778886  4599999998764  4488999999999999999999999999999998777777 99999998 777666


Q ss_pred             C
Q 028656          203 F  203 (206)
Q Consensus       203 ~  203 (206)
                      .
T Consensus       168 ~  168 (267)
T 1vl8_A          168 N  168 (267)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=99.95  E-value=2.4e-27  Score=188.89  Aligned_cols=147  Identities=20%  Similarity=0.315  Sum_probs=128.5

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...  +.++..+.+|++|.  +++.++++.+
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~  105 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV--GGKALPIRCDVTQPDQVRGMLDQMTG  105 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999998888764  45678899999985  3667788888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      .+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.+++||++||.++..+.
T Consensus       106 ~~g~--iD~lvnnAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~  176 (276)
T 3r1i_A          106 ELGG--IDIAVCNAGIVSV--QAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIIN  176 (276)
T ss_dssp             HHSC--CSEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC
T ss_pred             HcCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccC
Confidence            8886  5599999999865  348899999999999999999999999999999888764459999999987654

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=99.95  E-value=1e-27  Score=190.13  Aligned_cols=147  Identities=24%  Similarity=0.400  Sum_probs=119.1

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      ..++++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++     +.++..+.+|++|.  +++.++.+
T Consensus        21 ~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~   95 (266)
T 3grp_A           21 SMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-----GKDVFVFSANLSDRKSIKQLAEVA   95 (266)
T ss_dssp             CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHHHH
T ss_pred             chhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEeecCCHHHHHHHHHHH
Confidence            345688999999999999999999999999999999999998888776654     45688899999985  35667778


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+.++++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.++..+.|.
T Consensus        96 ~~~~g~i--D~lvnnAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~-Iv~isS~~~~~~~~~  169 (266)
T 3grp_A           96 EREMEGI--DILVNNAGITRD--GLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGR-IINITSIVGVVGNPG  169 (266)
T ss_dssp             HHHHTSC--CEEEECCCCC-------CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCC-------C
T ss_pred             HHHcCCC--CEEEECCCCCCC--CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcE-EEEECCHHHcCCCCC
Confidence            8888864  599999998765  4488899999999999999999999999999999887777 999999999888764

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=99.95  E-value=1.9e-27  Score=189.66  Aligned_cols=147  Identities=24%  Similarity=0.350  Sum_probs=127.4

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||+++|++|+++|++|++++|+.+++++..++++..  +.++..+.+|++|.  +++.++++.+.+
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA--GHDVDGSSCDVTSTDEVHAAVAAAVERF   99 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            57999999999999999999999999999999999999999998888764  56788899999985  356677888888


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhh--hhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLP--GMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~--~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|  .|++++.|+ ||++||.++..+.|..
T Consensus       100 g~i--d~lv~nAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~-iV~isS~~~~~~~~~~  172 (279)
T 3sju_A          100 GPI--GILVNSAGRNGG--GETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGR-IVNIASTGGKQGVMYA  172 (279)
T ss_dssp             CSC--CEEEECCCCCCC--SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEE-EEEECCGGGTSCCTTC
T ss_pred             CCC--cEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcE-EEEECChhhccCCCCC
Confidence            864  599999998765  4588999999999999999999999999999  688777777 9999999999888754

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.95  E-value=2.9e-27  Score=187.15  Aligned_cols=148  Identities=22%  Similarity=0.296  Sum_probs=129.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      .++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+.  +.++..+.+|++|.  +++.++++.+.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT--GRRALSVGTDITDDAQVAHLVDETMKA   85 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            367999999999999999999999999999999999999999999888774  56788999999985  35667788888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+... ..++.+.+.++|++++++|+.|++.++++++|.|.+++ |+ ||++||..+..+.|.+
T Consensus        86 ~g~--id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~-iv~isS~~~~~~~~~~  157 (264)
T 3ucx_A           86 YGR--VDVVINNAFRVPS-MKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-GA-VVNVNSMVVRHSQAKY  157 (264)
T ss_dssp             TSC--CSEEEECCCSCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-CE-EEEECCGGGGCCCTTC
T ss_pred             cCC--CcEEEECCCCCCC-CCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CE-EEEECcchhccCCCcc
Confidence            886  5599999998633 24588999999999999999999999999999998765 76 9999999999887754

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=99.95  E-value=1.6e-27  Score=190.41  Aligned_cols=149  Identities=25%  Similarity=0.426  Sum_probs=128.9

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-ChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++.+|+++||||++|||+++|++|+++|++|++++| +.+.+++..+++... .+.++..+.+|++|.  +++.++++.+
T Consensus        22 ~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~  100 (281)
T 3v2h_A           22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGL-SSGTVLHHPADMTKPSEIADMMAMVAD  100 (281)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTT-CSSCEEEECCCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhc-cCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999 667778777777654 356788899999985  3566677888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.++..+.|..
T Consensus       101 ~~g~--iD~lv~nAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  173 (281)
T 3v2h_A          101 RFGG--ADILVNNAGVQFV--EKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGR-IINIASAHGLVASPFK  173 (281)
T ss_dssp             HTSS--CSEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCTTC
T ss_pred             HCCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCE-EEEECCcccccCCCCc
Confidence            8886  5599999999765  4488999999999999999999999999999999888777 9999999999888754

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=99.95  E-value=5.1e-27  Score=185.48  Aligned_cols=149  Identities=28%  Similarity=0.362  Sum_probs=130.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+.  +.++..+.+|+++.  +++.++.+.+.
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~  103 (262)
T 3rkr_A           26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA--GGEAESHACDLSHSDAIAAFATGVLAA  103 (262)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh--CCceeEEEecCCCHHHHHHHHHHHHHh
Confidence            378999999999999999999999999999999999999999998888764  56788999999975  35666777888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+... ..++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.++..+.|..
T Consensus       104 ~g~--id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  176 (262)
T 3rkr_A          104 HGR--CDVLVNNAGVGWF-GGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGH-IINISSLAGKNPVADG  176 (262)
T ss_dssp             HSC--CSEEEECCCCCCC-SSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCE-EEEECSSCSSCCCTTC
T ss_pred             cCC--CCEEEECCCccCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCce-EEEEechhhcCCCCCC
Confidence            886  5599999998433 24588899999999999999999999999999999888787 9999999999887754

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=99.95  E-value=3.3e-27  Score=190.21  Aligned_cols=147  Identities=21%  Similarity=0.270  Sum_probs=129.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      ++||+++||||++|||+++|++|+++|++|++++|+.++++++.++++..  +.++..+.+|++|.  +++.++.+.+.+
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ--GFDAHGVVCDVRHLDEMVRLADEAFRLL  106 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHhC
Confidence            67999999999999999999999999999999999999999999888774  56788999999985  356667777778


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||+...  .++.+.+.+++++++++|+.|++.++++++|.|++++ .|+ ||++||.++..+.|+.
T Consensus       107 g~--id~lvnnAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  178 (301)
T 3tjr_A          107 GG--VDVVFSNAGIVVA--GPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGH-IAFTASFAGLVPNAGL  178 (301)
T ss_dssp             SS--CSEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEE-EEEECCGGGTSCCTTB
T ss_pred             CC--CCEEEECCCcCCC--CCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcE-EEEeCchhhcCCCCCc
Confidence            86  5599999999865  4588999999999999999999999999999998877 455 9999999999888754

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=99.95  E-value=4.2e-27  Score=187.07  Aligned_cols=150  Identities=19%  Similarity=0.273  Sum_probs=128.9

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      .+++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++...  +.++..+.+|++|.  +++.++.+.
T Consensus        16 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   93 (273)
T 1ae1_A           16 RWSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVCDLLSRTERDKLMQTVA   93 (273)
T ss_dssp             CCCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999888888887663  45678899999975  255667777


Q ss_pred             HHh-cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          126 EAI-EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       126 ~~~-~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +.+ ++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.++..+.|..
T Consensus        94 ~~~~g~--id~lv~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~-iv~isS~~~~~~~~~~  168 (273)
T 1ae1_A           94 HVFDGK--LNILVNNAGVVIH--KEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGN-VIFLSSIAGFSALPSV  168 (273)
T ss_dssp             HHTTSC--CCEEEECCCCCCC--CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEE-EEEECCGGGTSCCTTC
T ss_pred             HHcCCC--CcEEEECCCCCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcE-EEEEcCHhhcCCCCCc
Confidence            777 64  5599999998754  3488899999999999999999999999999998877777 9999999998877743

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=99.95  E-value=3.1e-27  Score=185.57  Aligned_cols=149  Identities=28%  Similarity=0.359  Sum_probs=123.5

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...  +.++..+.+|++|.  +++.++++.
T Consensus         4 ~~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   81 (253)
T 3qiv_A            4 SMRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD--GGTAISVAVDVSDPESAKAMADRTL   81 (253)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            56778999999999999999999999999999999999999999998888764  56788999999985  356677788


Q ss_pred             HHhcCCCccEEEEeccccCC-cccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          126 EAIEGLDVGVLINNVGISYP-YARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      +.+++  +|++|||||+... ...++.+.+.++|++++++|+.|++.++++++|.|++++.++ ||++||..+..+.
T Consensus        82 ~~~g~--id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~  155 (253)
T 3qiv_A           82 AEFGG--IDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGA-IVNQSSTAAWLYS  155 (253)
T ss_dssp             HHHSC--CCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEE-EEEECC-------
T ss_pred             HHcCC--CCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCE-EEEECCccccCCC
Confidence            88886  5599999998532 224577889999999999999999999999999999888777 9999999887443

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=99.95  E-value=3.7e-27  Score=186.00  Aligned_cols=145  Identities=22%  Similarity=0.331  Sum_probs=125.6

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++     +.++..+.+|++|.  +++.++++.+.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~   79 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI-----GPAAYAVQMDVTRQDSIDAAIAATVEH   79 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999999888877766     34578899999985  35666777788


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+...  .++.+.+.++|++++++|+.|+++++++++|.|++++ .|+ ||++||.++..+.|..
T Consensus        80 ~g~--id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  152 (259)
T 4e6p_A           80 AGG--LDILVNNAALFDL--APIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGK-IINMASQAGRRGEALV  152 (259)
T ss_dssp             SSS--CCEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEE-EEEECCGGGTSCCTTB
T ss_pred             cCC--CCEEEECCCcCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeE-EEEECChhhccCCCCC
Confidence            875  5599999998765  4588999999999999999999999999999998876 455 9999999999887754

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=99.95  E-value=2.4e-27  Score=185.73  Aligned_cols=146  Identities=25%  Similarity=0.392  Sum_probs=126.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-ChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      .+|+++||||++|||+++|++|+++|++|++++| +.++.+++.++++..  +.++..+.+|++|.  +++.++++.+.+
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAK--GVDSFAIQANVADADEVKAMIKEVVSQF   80 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999999999999887 557788888888764  56788899999985  356678888888


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|+|++++.|+ ||++||.++..+.|..
T Consensus        81 g~i--d~lv~nAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  151 (246)
T 3osu_A           81 GSL--DVLVNNAGITRD--NLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGA-IINLSSVVGAVGNPGQ  151 (246)
T ss_dssp             SCC--CEEEECCCCCCC--CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCHHHHHCCTTC
T ss_pred             CCC--CEEEECCCCCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCE-EEEEcchhhcCCCCCC
Confidence            864  599999999765  4488999999999999999999999999999999888777 9999999998887754

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=99.95  E-value=2.9e-27  Score=185.02  Aligned_cols=152  Identities=23%  Similarity=0.263  Sum_probs=126.7

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEec--CCC--chHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF--SGD--LDEGVER  123 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~--~~~~~~~  123 (206)
                      ..+++||+++||||++|||+++|++|+++|++|++++|+.+++++..++++..+ ......+.+|+  ++.  +++.++.
T Consensus         9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~d~d~~~~~~~~~~~~~   87 (247)
T 3i1j_A            9 PELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG-QPQPLIIALNLENATAQQYRELAAR   87 (247)
T ss_dssp             TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-SCCCEEEECCTTTCCHHHHHHHHHH
T ss_pred             CccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC-CCCceEEEeccccCCHHHHHHHHHH
Confidence            345789999999999999999999999999999999999999999999887754 23445555665  653  2455677


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +.+.+++  +|++|||||+..+. .++.+.+.++|++.+++|+.|++.++++++|.|++++.++ ||++||..+..+.|.
T Consensus        88 ~~~~~g~--id~lv~nAg~~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~-iv~isS~~~~~~~~~  163 (247)
T 3i1j_A           88 VEHEFGR--LDGLLHNASIIGPR-TPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDAS-IAFTSSSVGRKGRAN  163 (247)
T ss_dssp             HHHHHSC--CSEEEECCCCCCCC-SCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEE-EEEECCGGGTSCCTT
T ss_pred             HHHhCCC--CCEEEECCccCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCe-EEEEcchhhcCCCCC
Confidence            7777775  55999999986432 4588999999999999999999999999999998777677 999999999988775


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      .
T Consensus       164 ~  164 (247)
T 3i1j_A          164 W  164 (247)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=99.95  E-value=2.9e-27  Score=188.06  Aligned_cols=146  Identities=23%  Similarity=0.337  Sum_probs=124.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++.+|+++||||++|||+++|++|+++|++|++++|+.+++++..+++     +.++..+.+|++|.  +++.++++.+.
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~~~   99 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI-----GDDALCVPTDVTDPDSVRALFTATVEK   99 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----TSCCEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence            367999999999999999999999999999999999999888877776     34678899999985  36677888888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC--CCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK--KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++  |++|||||+..+. .++.+.+.++|++++++|+.|++.++++++|.|++++  .|+ ||++||..+..+.|..
T Consensus       100 ~g~i--D~lVnnAg~~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~-IV~isS~~~~~~~~~~  174 (272)
T 4dyv_A          100 FGRV--DVLFNNAGTGAPA-IPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGR-IINNGSISATSPRPYS  174 (272)
T ss_dssp             HSCC--CEEEECCCCCCCS-SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEE-EEEECCSSTTSCCTTC
T ss_pred             cCCC--CEEEECCCCCCCC-CChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcE-EEEECchhhcCCCCCc
Confidence            8864  5999999987542 3588999999999999999999999999999998876  455 9999999999888754

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=99.95  E-value=3.2e-27  Score=184.98  Aligned_cols=147  Identities=27%  Similarity=0.381  Sum_probs=126.4

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-ChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++|+++||||++|||++++++|+++|++|++++| +.++++++.++++..  +.++..+.+|++|.  +++.++++.+.
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKL--GSDAIAVRADVANAEDVTNMVKQTVDV   79 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999 888888888887663  45678899999975  35666777778


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+..+.|..
T Consensus        80 ~g~--id~lv~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  151 (246)
T 2uvd_A           80 FGQ--VDILVNNAGVTKD--NLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGR-IVNIASVVGVTGNPGQ  151 (246)
T ss_dssp             HSC--CCEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCTHHHHCCTTB
T ss_pred             cCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcE-EEEECCHHhcCCCCCC
Confidence            886  4599999998754  4588999999999999999999999999999998877777 9999999988776643

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=99.95  E-value=3.7e-27  Score=191.41  Aligned_cols=150  Identities=20%  Similarity=0.309  Sum_probs=131.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.+.++..+.+|+++.  +++.++.+.+.
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   84 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR   84 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            3579999999999999999999999999999999999999999999888765556899999999985  35566777777


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC------CCCceEEEeccccccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR------KKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~------~~g~~iv~isS~~~~~~~  201 (206)
                      +++  +|++|||||+...  .++.+.+.+++++++++|+.|++.++++++|.|.++      +.|+ ||++||.++..+.
T Consensus        85 ~g~--id~lv~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~-iV~isS~a~~~~~  159 (319)
T 3ioy_A           85 FGP--VSILCNNAGVNLF--QPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGH-VVNTASMAAFLAA  159 (319)
T ss_dssp             TCC--EEEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCE-EEEECCGGGTCCC
T ss_pred             CCC--CCEEEECCCcCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcE-EEEecccccccCC
Confidence            774  6699999998765  458899999999999999999999999999999875      4566 9999999999988


Q ss_pred             cCC
Q 028656          202 RFH  204 (206)
Q Consensus       202 ~~~  204 (206)
                      |..
T Consensus       160 ~~~  162 (319)
T 3ioy_A          160 GSP  162 (319)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            754

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=99.95  E-value=3.2e-27  Score=187.49  Aligned_cols=158  Identities=19%  Similarity=0.250  Sum_probs=128.8

Q ss_pred             hhhccCCcccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC-hhhHHHHHHHHHHhcCCceEEEEEEecCCC--
Q 028656           40 VNFLRPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--  116 (206)
Q Consensus        40 ~~~~~~~~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--  116 (206)
                      .+.......++++||+++||||++|||+++|++|+++|++|++++|+ .+..+++.++++..  +.++.++.+|+++.  
T Consensus        16 ~~~~~~~~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   93 (271)
T 4iin_A           16 ENLYFQSNAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEK--GYKAAVIKFDAASESD   93 (271)
T ss_dssp             --------CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             ceehhhhhhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHH
Confidence            33444445677889999999999999999999999999999999994 55566677777663  56788999999985  


Q ss_pred             chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccc
Q 028656          117 LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE  196 (206)
Q Consensus       117 ~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~  196 (206)
                      +++.++++.+.+++  +|++|||||+...  .++.+.+.+++++.+++|+.|++.+++.++|.|++++.++ ||++||.+
T Consensus        94 v~~~~~~~~~~~g~--id~li~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~-iv~isS~~  168 (271)
T 4iin_A           94 FIEAIQTIVQSDGG--LSYLVNNAGVVRD--KLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGS-VVNVASII  168 (271)
T ss_dssp             HHHHHHHHHHHHSS--CCEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCHH
T ss_pred             HHHHHHHHHHhcCC--CCEEEECCCcCCC--cccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCE-EEEEechh
Confidence            35666777777775  5599999999875  3478899999999999999999999999999998887777 99999999


Q ss_pred             ccccccCC
Q 028656          197 LMCSVRFH  204 (206)
Q Consensus       197 ~~~~~~~~  204 (206)
                      +..+.|+.
T Consensus       169 ~~~~~~~~  176 (271)
T 4iin_A          169 GERGNMGQ  176 (271)
T ss_dssp             HHHCCTTC
T ss_pred             hcCCCCCc
Confidence            98887754

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=99.95  E-value=1.9e-27  Score=189.78  Aligned_cols=148  Identities=20%  Similarity=0.245  Sum_probs=128.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++..  .+.++..+.+|+++.  +++.++.+.+.
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAG--GGGEAAALAGDVGDEALHEALVELAVRR   82 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTT--TTCCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            36799999999999999999999999999999999999999988888865  356788899999985  35667788888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc-ccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM-CSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~-~~~~~  203 (206)
                      ++++  |++|||||+... ..++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+. .+.|.
T Consensus        83 ~g~i--D~lvnnAg~~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  155 (280)
T 3tox_A           83 FGGL--DTAFNNAGALGA-MGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGS-LTFTSSFVGHTAGFAG  155 (280)
T ss_dssp             HSCC--CEEEECCCCCCS-CSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEE-EEEECCSBTTTBCCTT
T ss_pred             cCCC--CEEEECCCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCE-EEEEcChhhCcCCCCC
Confidence            8864  599999998743 24588999999999999999999999999999999887777 9999999887 55553

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=99.95  E-value=6.9e-27  Score=189.68  Aligned_cols=149  Identities=23%  Similarity=0.367  Sum_probs=127.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC------------hhhHHHHHHHHHHhcCCceEEEEEEecCCC-
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN------------PDKLKDVSDSIQAKYAKTQIKSVVVDFSGD-  116 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-  116 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+            .+++++..+++...  +.++..+.+|++|. 
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~  120 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ--GRRIIARQADVRDLA  120 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCCHH
Confidence            3679999999999999999999999999999999886            56677777777653  56788999999985 


Q ss_pred             -chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccc
Q 028656          117 -LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKA  195 (206)
Q Consensus       117 -~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~  195 (206)
                       +++.++++.+.++++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.+++||++||.
T Consensus       121 ~v~~~~~~~~~~~g~i--D~lVnnAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~  196 (317)
T 3oec_A          121 SLQAVVDEALAEFGHI--DILVSNVGISNQ--GEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSST  196 (317)
T ss_dssp             HHHHHHHHHHHHHSCC--CEEEECCCCCCC--BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCG
T ss_pred             HHHHHHHHHHHHcCCC--CEEEECCCCCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcH
Confidence             366778888888864  599999999865  448899999999999999999999999999999887644449999999


Q ss_pred             cccccccCC
Q 028656          196 ELMCSVRFH  204 (206)
Q Consensus       196 ~~~~~~~~~  204 (206)
                      .+..+.|..
T Consensus       197 ~~~~~~~~~  205 (317)
T 3oec_A          197 VGLRGAPGQ  205 (317)
T ss_dssp             GGSSCCTTB
T ss_pred             HhcCCCCCC
Confidence            999888754

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=99.95  E-value=3.3e-27  Score=184.82  Aligned_cols=148  Identities=22%  Similarity=0.329  Sum_probs=129.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++++.  +.++..+.+|++|.  +++.++++.+.
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (247)
T 3lyl_A            2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK--GFKARGLVLNISDIESIQNFFAEIKAE   79 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            457999999999999999999999999999999999999999988888774  56788899999985  25556666666


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+...  .++.+.+.++|++++++|+.|++.+++.++|.|.+++.|+ ||++||..+..+.|..
T Consensus        80 ~~~--id~li~~Ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  151 (247)
T 3lyl_A           80 NLA--IDILVNNAGITRD--NLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGR-IISIGSVVGSAGNPGQ  151 (247)
T ss_dssp             TCC--CSEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCTHHHHCCTTC
T ss_pred             cCC--CCEEEECCCCCCC--CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeE-EEEEcchhhccCCCCc
Confidence            665  5599999999865  3488899999999999999999999999999999888787 9999999998887754

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=99.95  E-value=7e-27  Score=184.69  Aligned_cols=150  Identities=25%  Similarity=0.427  Sum_probs=128.4

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++++|+++||||++|||++++++|+++|++|++++|+.++++++.+++.... +.++..+.+|++|.  +++.++++.+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (263)
T 3ai3_A            3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVATPEGVDAVVESVRS   81 (263)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            45679999999999999999999999999999999999988888888776542 34678899999975  3566677777


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+...  .++.+.+.++|++.+++|+.|++.++++++|.|++++.++ ||++||..+..+.|..
T Consensus        82 ~~g~--id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  154 (263)
T 3ai3_A           82 SFGG--ADILVNNAGTGSN--ETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGA-IIHNASICAVQPLWYE  154 (263)
T ss_dssp             HHSS--CSEEEECCCCCCC--CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCTTC
T ss_pred             HcCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcE-EEEECchhhcCCCCCc
Confidence            8886  4599999998754  4488899999999999999999999999999998877677 9999999998877643

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=99.95  E-value=3.7e-27  Score=183.60  Aligned_cols=142  Identities=15%  Similarity=0.198  Sum_probs=118.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~  129 (206)
                      .+|+++||||++|||+++|++|+++|++|++++|+.+++++..+++.     ..+..+.+|++|.  +++.++++.+.++
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~g   76 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG-----NAVIGIVADLAHHEDVDVAFAAAVEWGG   76 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTSHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----CCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            47899999999999999999999999999999999999888777762     2488899999985  3566677888888


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++ ++ ||++||.++..+.|..
T Consensus        77 ~--id~lvnnAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~-iv~isS~~~~~~~~~~  145 (235)
T 3l6e_A           77 L--PELVLHCAGTGEF--GPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG-GV-LANVLSSAAQVGKANE  145 (235)
T ss_dssp             S--CSEEEEECCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-EE-EEEECCEECCSSCSSH
T ss_pred             C--CcEEEECCCCCCC--CChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CE-EEEEeCHHhcCCCCCC
Confidence            6  5599999999754  4588999999999999999999999999999987664 45 9999999999887753

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=99.95  E-value=4.5e-27  Score=185.40  Aligned_cols=150  Identities=15%  Similarity=0.133  Sum_probs=127.4

Q ss_pred             cccCCcEEEEECCCC--hHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           49 LRKYGSWALVTGPTD--GIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        49 ~~~~~k~vlItGas~--giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      ++++||+++||||+|  |||+++|++|+++|++|++++|+++.++++.+++++. ++.++..+++|++++  +++.++++
T Consensus         2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~   80 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQL-NQPEAHLYQIDVQSDEEVINGFEQI   80 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGG-TCSSCEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCCcEEEEEccCCCHHHHHHHHHHH
Confidence            457899999999875  9999999999999999999999999999988888765 355678899999985  36777888


Q ss_pred             HHHhcCCCccEEEEeccccCCc--ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          125 KEAIEGLDVGVLINNVGISYPY--ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      .++++++|  ++|||||+....  ..++.+.+.|+|+..+++|+.+++.+++.+.|.+.  +.|+ ||++||.++..+.|
T Consensus        81 ~~~~G~iD--~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~--~~G~-IVnisS~~~~~~~~  155 (256)
T 4fs3_A           81 GKDVGNID--GVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMP--EGGS-IVATTYLGGEFAVQ  155 (256)
T ss_dssp             HHHHCCCS--EEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCT--TCEE-EEEEECGGGTSCCT
T ss_pred             HHHhCCCC--EEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCE-EEEEeccccccCcc
Confidence            89999755  999999987532  23577889999999999999999999999998663  3455 99999999999988


Q ss_pred             CC
Q 028656          203 FH  204 (206)
Q Consensus       203 ~~  204 (206)
                      .+
T Consensus       156 ~~  157 (256)
T 4fs3_A          156 NY  157 (256)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=99.95  E-value=8.2e-27  Score=184.06  Aligned_cols=150  Identities=23%  Similarity=0.289  Sum_probs=126.0

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~  126 (206)
                      +++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++....++.++..+.+|++|..  ++.++++.+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   82 (260)
T 2z1n_A            3 LGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD   82 (260)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            346799999999999999999999999999999999999988888888765322336888999999852  445555555


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .++   +|++|||||+...  .++.+.+.++|++.+++|+.|++.++++++|.|++++.|+ ||++||..+..+.|..
T Consensus        83 ~~g---id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  154 (260)
T 2z1n_A           83 LGG---ADILVYSTGGPRP--GRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGR-MVYIGSVTLLRPWQDL  154 (260)
T ss_dssp             TTC---CSEEEECCCCCCC--BCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCTTB
T ss_pred             hcC---CCEEEECCCCCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcE-EEEECchhhcCCCCCC
Confidence            555   5599999998754  4588899999999999999999999999999998887777 9999999998877643

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=99.95  E-value=1.2e-26  Score=190.30  Aligned_cols=145  Identities=25%  Similarity=0.373  Sum_probs=126.6

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh-------HHHHHHHHHHhcCCceEEEEEEecCCC--chH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK-------LKDVSDSIQAKYAKTQIKSVVVDFSGD--LDE  119 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~  119 (206)
                      .+++||+++||||++|||+++|++|+++|++|++++|+.++       +++..++++..  +.++..+.+|++|.  +++
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~--g~~~~~~~~Dv~d~~~v~~  118 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAV--GGKALPCIVDVRDEQQISA  118 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHT--TCEEEEEECCTTCHHHHHH
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHH
Confidence            45789999999999999999999999999999999999764       56667777663  56788999999985  367


Q ss_pred             HHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          120 GVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       120 ~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      .++++.+.++++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|+|++++.++ ||++||..+..
T Consensus       119 ~~~~~~~~~g~i--DilVnnAG~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~-IV~iSS~~~~~  193 (346)
T 3kvo_A          119 AVEKAIKKFGGI--DILVNNASAISL--TNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAH-ILNISPPLNLN  193 (346)
T ss_dssp             HHHHHHHHHSCC--CEEEECCCCCCC--CCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCE-EEEECCCCCCC
T ss_pred             HHHHHHHHcCCC--CEEEECCCCCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCE-EEEECCHHHcC
Confidence            778888888864  599999999865  4588999999999999999999999999999998887787 99999999887


Q ss_pred             c
Q 028656          200 S  200 (206)
Q Consensus       200 ~  200 (206)
                      +
T Consensus       194 ~  194 (346)
T 3kvo_A          194 P  194 (346)
T ss_dssp             G
T ss_pred             C
Confidence            7

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=99.95  E-value=8.3e-27  Score=184.28  Aligned_cols=148  Identities=22%  Similarity=0.302  Sum_probs=127.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.++++++.+++...  +.++..+.+|+++.  +++.++.+.+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK--GVEARSYVCDVTSEEAVIGTVDSVVRD   81 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            356999999999999999999999999999999999999888888887653  45688899999975  35666777778


Q ss_pred             hcCCCccEEEEecccc-CCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGIS-YPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~-~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+. ..  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+..+.|..
T Consensus        82 ~g~--id~lv~nAg~~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  154 (262)
T 1zem_A           82 FGK--IDFLFNNAGYQGAF--APVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGR-IVNTASMAGVKGPPNM  154 (262)
T ss_dssp             HSC--CCEEEECCCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCHHHHSCCTTB
T ss_pred             hCC--CCEEEECCCCCCCC--CccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcE-EEEEcchhhccCCCCC
Confidence            886  45999999986 33  4588899999999999999999999999999998877777 9999999988877643

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=99.95  E-value=1.4e-26  Score=182.49  Aligned_cols=145  Identities=23%  Similarity=0.304  Sum_probs=125.1

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh--HHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK--LKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +|+++||||++|||++++++|+++|++|++++|+.++  +++..++++..  +.++..+.+|+++.  +++.++++.+.+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   79 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAA--DQKAVFVGLDVTDKANFDSAIDEAAEKL   79 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            7899999999999999999999999999999999887  77777777653  45688899999985  356667777888


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC-CceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK-GLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++. |+ ||++||..+..+.|..
T Consensus        80 g~--iD~lv~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  151 (258)
T 3a28_C           80 GG--FDVLVNNAGIAQI--KPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGK-IINAASIAAIQGFPIL  151 (258)
T ss_dssp             TC--CCEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCE-EEEECCGGGTSCCTTC
T ss_pred             CC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcE-EEEECcchhccCCCCc
Confidence            86  4599999998754  45889999999999999999999999999999988776 66 9999999998877643

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=99.95  E-value=2e-26  Score=181.78  Aligned_cols=150  Identities=23%  Similarity=0.296  Sum_probs=127.5

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      .++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++...  +.++..+.+|++|.  .++.++.+.+
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   87 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE--GLSVTGTVCHVGKAEDRERLVAMAVN   87 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHH
Confidence            3467999999999999999999999999999999999999888888887663  45678889999975  3566677777


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+... ..++.+.+.++|++++++|+.|++.++++++|.|++++.++ ||++||..+..+.|..
T Consensus        88 ~~g~--iD~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  161 (260)
T 2zat_A           88 LHGG--VDILVSNAAVNPF-FGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGS-VLIVSSVGAYHPFPNL  161 (260)
T ss_dssp             HHSC--CCEEEECCCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEE-EEEECCGGGTSCCTTB
T ss_pred             HcCC--CCEEEECCCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCE-EEEEechhhcCCCCCc
Confidence            8886  4599999998642 23578899999999999999999999999999998877677 9999999998877643

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=99.95  E-value=1.1e-26  Score=182.92  Aligned_cols=144  Identities=21%  Similarity=0.293  Sum_probs=123.2

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.+++++..+++     +.++..+.+|+++.  +++.++++.+.+
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            56899999999999999999999999999999999998877766554     34578889999975  356667777788


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||+...  .++.+.+.++|++++++|+.|++.+++.++|.|++++.++ ||++||..+..+.|..
T Consensus        78 g~--iD~lv~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  148 (254)
T 1hdc_A           78 GS--VDGLVNNAGISTG--MFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGS-IVNISSAAGLMGLALT  148 (254)
T ss_dssp             SC--CCEEEECCCCCCC--SCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCTTC
T ss_pred             CC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCE-EEEECchhhccCCCCc
Confidence            86  4599999998754  3478899999999999999999999999999998877677 9999999998876643

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=99.95  E-value=5.8e-27  Score=184.58  Aligned_cols=143  Identities=18%  Similarity=0.236  Sum_probs=124.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++     +.++..+.+|++|.  +++.++.+.+.
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAGQT   79 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHH
Confidence            367999999999999999999999999999999999999888877765     34688899999985  35666777788


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++  .|+ ||++||.++..+.|.+
T Consensus        80 ~g~--id~lv~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~--~g~-iv~isS~~~~~~~~~~  149 (255)
T 4eso_A           80 LGA--IDLLHINAGVSEL--EPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIRE--GGS-IVFTSSVADEGGHPGM  149 (255)
T ss_dssp             HSS--EEEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEE-EEEECCGGGSSBCTTB
T ss_pred             hCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CCE-EEEECChhhcCCCCCc
Confidence            875  6699999999765  45889999999999999999999999999998854  356 9999999999888754

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=99.95  E-value=2.1e-26  Score=183.14  Aligned_cols=148  Identities=26%  Similarity=0.317  Sum_probs=123.6

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~  125 (206)
                      .++++||+++||||++|||+++|++|+++|++|++++|+ +..++..+++..  .+.++..+.+|++|..  ++. .+..
T Consensus        26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~-~~~~  101 (273)
T 3uf0_A           26 PFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIAD--GGGSAEAVVADLADLEGAANV-AEEL  101 (273)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHHHT--TTCEEEEEECCTTCHHHHHHH-HHHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHH-HHHH
Confidence            356789999999999999999999999999999999966 456666666665  3567889999999852  233 3334


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +.+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+..+.|..
T Consensus       102 ~~~g~--iD~lv~nAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~-IV~isS~~~~~~~~~~  175 (273)
T 3uf0_A          102 AATRR--VDVLVNNAGIIAR--APAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGR-IVTIASMLSFQGGRNV  175 (273)
T ss_dssp             HHHSC--CCEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCSSC
T ss_pred             HhcCC--CcEEEECCCCCCC--CCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCE-EEEEcchHhcCCCCCC
Confidence            44564  5699999999865  4588999999999999999999999999999999888787 9999999999888754

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=99.95  E-value=2e-26  Score=183.59  Aligned_cols=148  Identities=27%  Similarity=0.357  Sum_probs=127.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++++.  +.++..+.+|++|.  +++.++.+.+.
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   96 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA--GVEADGRTCDVRSVPEIEALVAAVVER   96 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            477999999999999999999999999999999999999888888888664  45678899999975  35666777777


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhh--hHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPG--MLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~--~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.  |++++.++ ||++||..+..+.|..
T Consensus        97 ~g~--iD~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~-iv~isS~~~~~~~~~~  170 (277)
T 2rhc_B           97 YGP--VDVLVNNAGRPGG--GATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGR-IVNIASTGGKQGVVHA  170 (277)
T ss_dssp             TCS--CSEEEECCCCCCC--SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEE-EEEECCGGGTSCCTTC
T ss_pred             hCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeE-EEEECccccccCCCCC
Confidence            775  5599999998754  44788999999999999999999999999999  88776677 9999999998877643

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=99.95  E-value=3.6e-26  Score=180.83  Aligned_cols=150  Identities=19%  Similarity=0.231  Sum_probs=129.8

Q ss_pred             ccCCcEEEEECCC-ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           50 RKYGSWALVTGPT-DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas-~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      .+++|+++||||+ +|||+++|++|+++|++|++++|+.+++++..+++++. .+.++..+.+|++|.  +++.++++.+
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADL-GLGRVEAVVCDVTSTEAVDALITQTVE   97 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-CSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc-CCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            4789999999997 69999999999999999999999999999988888664 356789999999985  3566778888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.+.+||++||..+..+.|.+
T Consensus        98 ~~g~--id~li~~Ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~  171 (266)
T 3o38_A           98 KAGR--LDVLVNNAGLGGQ--TPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQ  171 (266)
T ss_dssp             HHSC--CCEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCCTTC
T ss_pred             HhCC--CcEEEECCCcCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCCCCC
Confidence            8886  5599999998765  458899999999999999999999999999999887444459999999999887754

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=99.95  E-value=2.2e-26  Score=181.24  Aligned_cols=145  Identities=25%  Similarity=0.348  Sum_probs=125.0

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~  130 (206)
                      +|+++||||++|||++++++|+++|++|++++|+.++++++.++++..  +.++..+.+|++|.  +++.++++.+.+++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA--GGHAVAVKVDVSDRDQVFAAVEQARKTLGG   79 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            689999999999999999999999999999999999888888887663  45678899999975  35666777777775


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccCC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~~  204 (206)
                        +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++ .++ ||++||..+..+.|..
T Consensus        80 --id~lv~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  149 (256)
T 1geg_A           80 --FDVIVNNAGVAPS--TPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGK-IINACSQAGHVGNPEL  149 (256)
T ss_dssp             --CCEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEE-EEEECCGGGTSCCTTB
T ss_pred             --CCEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCE-EEEECchhhcCCCCCc
Confidence              5599999998754  4588899999999999999999999999999998876 566 9999999998877643

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=99.95  E-value=1.1e-26  Score=183.35  Aligned_cols=148  Identities=25%  Similarity=0.333  Sum_probs=126.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh-HHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK-LKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.++ ++++.+++.... +.++..+.+|++|.  +++.++++.+.
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhcc-CCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999999887 888777776542 34678889999975  35666777778


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+..+.|..
T Consensus        81 ~g~--iD~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  152 (260)
T 1x1t_A           81 MGR--IDILVNNAGIQHT--ALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGR-IINIASAHGLVASANK  152 (260)
T ss_dssp             HSC--CSEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCTTC
T ss_pred             cCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCE-EEEECcHHhCcCCCCC
Confidence            886  4599999998754  4578899999999999999999999999999998877677 9999999998877643

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=99.95  E-value=2.5e-26  Score=180.27  Aligned_cols=145  Identities=21%  Similarity=0.328  Sum_probs=122.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh-hhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-DKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+. +++++   ++++.  +.++..+.+|++|.  +++.++++.+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (249)
T 2ew8_A            4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA---AIRNL--GRRVLTVKCDVSQPGDVEAFGKQVIS   78 (249)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH---HHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH---HHHhc--CCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            35699999999999999999999999999999999998 66654   33332  45688899999975  3566677777


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+..+.|..
T Consensus        79 ~~g~--id~lv~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  151 (249)
T 2ew8_A           79 TFGR--CDILVNNAGIYPL--IPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGR-IINLTSTTYWLKIEAY  151 (249)
T ss_dssp             HHSC--CCEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGGSCCSSC
T ss_pred             HcCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeE-EEEEcchhhccCCCCc
Confidence            7886  4599999998754  3488899999999999999999999999999998877677 9999999998887643

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.95  E-value=7.3e-27  Score=183.73  Aligned_cols=151  Identities=22%  Similarity=0.269  Sum_probs=126.2

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEE-cChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVER  123 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~  123 (206)
                      +....++|+++||||++|||+++|++|+++|++|++++ |+.++.++..+++...  +.++..+.+|++|.  +++.++.
T Consensus         7 ~~~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~   84 (256)
T 3ezl_A            7 HHMVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKAL--GFDFYASEGNVGDWDSTKQAFDK   84 (256)
T ss_dssp             ------CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCeeEEEecCCCCHHHHHHHHHH
Confidence            34457899999999999999999999999999999988 6777777777777664  55678899999985  3566677


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +.+.+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.++ ||++||.++..+.|.
T Consensus        85 ~~~~~g~--id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~  159 (256)
T 3ezl_A           85 VKAEVGE--IDVLVNNAGITRD--VVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGR-IINISSVNGQKGQFG  159 (256)
T ss_dssp             HHHHTCC--EEEEEECCCCCCC--CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCCCGGGSCSC
T ss_pred             HHHhcCC--CCEEEECCCCCCC--CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCE-EEEEcchhhccCCCC
Confidence            7777775  6699999999865  3488999999999999999999999999999999888787 999999999988775


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      .
T Consensus       160 ~  160 (256)
T 3ezl_A          160 Q  160 (256)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=99.95  E-value=1.1e-26  Score=185.00  Aligned_cols=148  Identities=21%  Similarity=0.323  Sum_probs=125.6

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++...  + ++..+.+|++|.  +++.++++.
T Consensus        24 ~~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~-~~~~~~~Dv~d~~~v~~~~~~~~  100 (276)
T 2b4q_A           24 YFSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAY--G-DCQAIPADLSSEAGARRLAQALG  100 (276)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTS--S-CEEECCCCTTSHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--C-ceEEEEeeCCCHHHHHHHHHHHH
Confidence            45578999999999999999999999999999999999998888877777542  2 678889999985  255566777


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC----CceEEEeccccccccc
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK----GLSMLNIGKAELMCSV  201 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~----g~~iv~isS~~~~~~~  201 (206)
                      +.+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.    ++ ||++||..+..+.
T Consensus       101 ~~~g~--iD~lvnnAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~-iV~isS~~~~~~~  175 (276)
T 2b4q_A          101 ELSAR--LDILVNNAGTSWG--AALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPAR-VINIGSVAGISAM  175 (276)
T ss_dssp             HHCSC--CSEEEECCCCCCC--CCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEE-EEEECCGGGTCCC
T ss_pred             HhcCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCE-EEEECCHHHcCCC
Confidence            77775  5599999998765  34788999999999999999999999999999987765    66 9999999998876


Q ss_pred             cC
Q 028656          202 RF  203 (206)
Q Consensus       202 ~~  203 (206)
                      |.
T Consensus       176 ~~  177 (276)
T 2b4q_A          176 GE  177 (276)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=99.95  E-value=1.8e-26  Score=181.95  Aligned_cols=148  Identities=25%  Similarity=0.355  Sum_probs=126.5

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++     +.++..+.+|+++.  +++.++++.
T Consensus         4 ~m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~   78 (261)
T 3n74_A            4 SMSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI-----GDAALAVAADISKEADVDAAVEAAL   78 (261)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHH
Confidence            46778999999999999999999999999999999999999888877765     44678899999985  356677888


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC----CCceEEEeccccccccc
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK----KGLSMLNIGKAELMCSV  201 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~----~g~~iv~isS~~~~~~~  201 (206)
                      +.+++  +|++|||||+... ..++.+.+.++|++++++|+.|++.++++++|.|++++    .++ ||++||..+..+.
T Consensus        79 ~~~g~--id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~-iv~isS~~~~~~~  154 (261)
T 3n74_A           79 SKFGK--VDILVNNAGIGHK-PQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECV-ILNVASTGAGRPR  154 (261)
T ss_dssp             HHHSC--CCEEEECCCCCCC-SCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEE-EEEECCTTTTSCC
T ss_pred             HhcCC--CCEEEECCccCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeE-EEEeCchhhcCCC
Confidence            88886  5599999998753 24578889999999999999999999999999998764    445 9999999999888


Q ss_pred             cCC
Q 028656          202 RFH  204 (206)
Q Consensus       202 ~~~  204 (206)
                      |..
T Consensus       155 ~~~  157 (261)
T 3n74_A          155 PNL  157 (261)
T ss_dssp             TTC
T ss_pred             CCc
Confidence            754

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.95  E-value=3.2e-26  Score=184.19  Aligned_cols=150  Identities=24%  Similarity=0.353  Sum_probs=126.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcC-CceEEEEEEecCCC--chHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYA-KTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++...+. ..++..+.+|+++.  +++.++++.+
T Consensus        23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  102 (297)
T 1xhl_A           23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA  102 (297)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            47799999999999999999999999999999999999998888888866421 12688899999985  3566677778


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc-cC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV-RF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~-~~  203 (206)
                      .+++  +|++|||||+....+..+.+.+.++|++++++|+.|++.++++++|.|++++ |+ ||++||..+..+. |.
T Consensus       103 ~~g~--iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~-IV~isS~~~~~~~~~~  176 (297)
T 1xhl_A          103 KFGK--IDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GE-IVNVSSIVAGPQAHSG  176 (297)
T ss_dssp             HHSC--CCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CE-EEEECCGGGSSSCCTT
T ss_pred             hcCC--CCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CE-EEEEcCchhccCCCCC
Confidence            8886  4599999998754222278899999999999999999999999999998776 77 9999999988776 53

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=99.94  E-value=1.4e-26  Score=179.96  Aligned_cols=146  Identities=24%  Similarity=0.365  Sum_probs=124.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~  129 (206)
                      ++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++.... +.++.++.+|++|.  +++.++++.+.++
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            37899999999999999999999999999999999999999888886442 56789999999985  2555677777787


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|. ++.++ +|++||..+..+.|+.
T Consensus        80 ~--id~li~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~~~~-ii~~sS~~~~~~~~~~  148 (235)
T 3l77_A           80 D--VDVVVANAGLGYF--KRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLK-RTGGL-ALVTTSDVSARLIPYG  148 (235)
T ss_dssp             S--CSEEEECCCCCCC--CCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHH-HHTCE-EEEECCGGGSSCCTTC
T ss_pred             C--CCEEEECCccccc--cCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCc-EEEEecchhcccCCCc
Confidence            6  5599999998765  4588999999999999999999999999999984 44566 9999998888877753

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=99.94  E-value=2.4e-26  Score=181.56  Aligned_cols=144  Identities=23%  Similarity=0.302  Sum_probs=123.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++..     .+..+.+|++|.  .++.++++.+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~   78 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD-----AARYVHLDVTQPAQWKAAVDTAVTA   78 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG-----GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc-----CceEEEecCCCHHHHHHHHHHHHHH
Confidence            35699999999999999999999999999999999999888776665532     477889999975  35666777788


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+..+.|.
T Consensus        79 ~g~--iD~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~  149 (260)
T 1nff_A           79 FGG--LHVLVNNAGILNI--GTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGS-IINISSIEGLAGTVA  149 (260)
T ss_dssp             HSC--CCEEEECCCCCCC--BCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCTT
T ss_pred             cCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCE-EEEEeehhhcCCCCC
Confidence            886  4599999998754  3478899999999999999999999999999998877777 999999999887764

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=99.94  E-value=6.2e-27  Score=185.56  Aligned_cols=143  Identities=23%  Similarity=0.335  Sum_probs=121.5

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      .++.+|+++||||++|||+++|++|+++|++|++++|+.+++++..        ...+..+.+|++|.  +++.++.+.+
T Consensus        12 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~~~~~~   83 (266)
T 3p19_A           12 RGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN--------LPNTLCAQVDVTDKYTFDTAITRAEK   83 (266)
T ss_dssp             ---CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTC--------CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhh--------cCCceEEEecCCCHHHHHHHHHHHHH
Confidence            3467999999999999999999999999999999999987655421        23578889999985  3566777888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.++..+.|..
T Consensus        84 ~~g~--iD~lvnnAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~-IV~isS~~~~~~~~~~  156 (266)
T 3p19_A           84 IYGP--ADAIVNNAGMMLL--GQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGT-IINISSIAGKKTFPDH  156 (266)
T ss_dssp             HHCS--EEEEEECCCCCCC--CCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE-EEEECCGGGTSCCTTC
T ss_pred             HCCC--CCEEEECCCcCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcE-EEEEcChhhCCCCCCC
Confidence            8885  6699999999865  4588999999999999999999999999999999888887 9999999999887754

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=99.94  E-value=2.6e-26  Score=184.80  Aligned_cols=148  Identities=21%  Similarity=0.267  Sum_probs=124.8

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC-c--hHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD-L--DEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~~~~  126 (206)
                      ..++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++.+.+ +.++.++.+|+++. .  +..++.+.+
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~   87 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKT   87 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999888887653 45788999999986 3  566677888


Q ss_pred             HhcCCCccEEEEeccccCCc----------------------------ccccccCCHHHHHHHHhhhhhHHHHHHHHHhh
Q 028656          127 AIEGLDVGVLINNVGISYPY----------------------------ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLP  178 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~----------------------------~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~  178 (206)
                      .++++  |++|||||+....                            ..++.+.+.+++++++++|+.|++.++++++|
T Consensus        88 ~~g~i--D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~  165 (311)
T 3o26_A           88 HFGKL--DILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIP  165 (311)
T ss_dssp             HHSSC--CEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             hCCCC--CEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhH
Confidence            88864  5999999987421                            12356778999999999999999999999999


Q ss_pred             hhHhCCCCceEEEeccccccccc
Q 028656          179 GMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       179 ~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      .|++++.++ ||++||.++..+.
T Consensus       166 ~l~~~~~~~-IV~isS~~~~~~~  187 (311)
T 3o26_A          166 LLQLSDSPR-IVNVSSSTGSLKY  187 (311)
T ss_dssp             HHTTSSSCE-EEEECCGGGSGGG
T ss_pred             hhccCCCCe-EEEEecCCccccc
Confidence            998877777 9999999988765

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=99.94  E-value=1.4e-26  Score=182.90  Aligned_cols=147  Identities=12%  Similarity=0.113  Sum_probs=116.8

Q ss_pred             CCcccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHH
Q 028656           45 PAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVE  122 (206)
Q Consensus        45 ~~~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~  122 (206)
                      .+.++++++|+++||||++|||+++|++|+++|++|++++|+.++..+..   .+.  +  +..+.+|+++.  +++.++
T Consensus        19 ~~~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~---~~~--~--~~~~~~Dv~~~~~v~~~~~   91 (260)
T 3gem_A           19 FQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTEL---RQA--G--AVALYGDFSCETGIMAFID   91 (260)
T ss_dssp             --------CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHH---HHH--T--CEEEECCTTSHHHHHHHHH
T ss_pred             cccCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH---Hhc--C--CeEEECCCCCHHHHHHHHH
Confidence            34567789999999999999999999999999999999999987654333   222  2  57789999975  356667


Q ss_pred             HHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          123 RIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       123 ~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      .+.+.+++  +|++|||||+.....   .+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+..+.|
T Consensus        92 ~~~~~~g~--iD~lv~nAg~~~~~~---~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~-iv~isS~~~~~~~~  165 (260)
T 3gem_A           92 LLKTQTSS--LRAVVHNASEWLAET---PGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVAD-IVHISDDVTRKGSS  165 (260)
T ss_dssp             HHHHHCSC--CSEEEECCCCCCCCC---TTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCE-EEEECCGGGGTCCS
T ss_pred             HHHHhcCC--CCEEEECCCccCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcE-EEEECChhhcCCCC
Confidence            77777775  559999999876532   4678899999999999999999999999998887777 99999999998877


Q ss_pred             CC
Q 028656          203 FH  204 (206)
Q Consensus       203 ~~  204 (206)
                      ..
T Consensus       166 ~~  167 (260)
T 3gem_A          166 KH  167 (260)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=99.94  E-value=1.1e-26  Score=182.94  Aligned_cols=148  Identities=14%  Similarity=0.159  Sum_probs=115.3

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++++|+++||||++|||+++|++|+++|++|++++|+.++.++..+++     +.++..+.+|++|.  +++.++++.+
T Consensus         3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~   77 (257)
T 3tpc_A            3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----GAAVRFRNADVTNEADATAALAFAKQ   77 (257)
T ss_dssp             -CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4567999999999999999999999999999999999998887776665     34577889999985  3667788888


Q ss_pred             HhcCCCccEEEEeccccCCcc--cccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC------CCCceEEEecccccc
Q 028656          127 AIEGLDVGVLINNVGISYPYA--RFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR------KKGLSMLNIGKAELM  198 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~------~~g~~iv~isS~~~~  198 (206)
                      .++++  |++|||||+.....  .+..+.+.++|++++++|+.|++.++++++|.|+++      +.|+ ||++||.++.
T Consensus        78 ~~g~i--d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~-iv~isS~~~~  154 (257)
T 3tpc_A           78 EFGHV--HGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGV-IVNTASIAAF  154 (257)
T ss_dssp             HHSCC--CEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEE-EEEECCTHHH
T ss_pred             HcCCC--CEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeE-EEEEechhhc
Confidence            88865  59999999876432  112367899999999999999999999999999875      4455 9999999998


Q ss_pred             ccccCC
Q 028656          199 CSVRFH  204 (206)
Q Consensus       199 ~~~~~~  204 (206)
                      .+.|..
T Consensus       155 ~~~~~~  160 (257)
T 3tpc_A          155 DGQIGQ  160 (257)
T ss_dssp             HCCTTC
T ss_pred             cCCCCC
Confidence            887754

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=99.94  E-value=4.9e-26  Score=181.19  Aligned_cols=144  Identities=21%  Similarity=0.336  Sum_probs=120.8

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC------------hhhHHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN------------PDKLKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      ..+++||+++||||++|||+++|++|+++|++|++++|+            .+++++..+++...  +.++..+.+|++|
T Consensus         8 ~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~   85 (278)
T 3sx2_A            8 EGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI--GSRIVARQADVRD   85 (278)
T ss_dssp             -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH--TCCEEEEECCTTC
T ss_pred             CCCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhc--CCeEEEEeCCCCC
Confidence            455789999999999999999999999999999999987            66677777777664  5678899999998


Q ss_pred             C--chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEec
Q 028656          116 D--LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG  193 (206)
Q Consensus       116 ~--~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~is  193 (206)
                      .  +++.++++.+.++++  |++|||||+....      .+.++|++++++|+.|++.++++++|.|++++.+++||++|
T Consensus        86 ~~~v~~~~~~~~~~~g~i--d~lv~nAg~~~~~------~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~is  157 (278)
T 3sx2_A           86 RESLSAALQAGLDELGRL--DIVVANAGIAPMS------AGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLIS  157 (278)
T ss_dssp             HHHHHHHHHHHHHHHCCC--CEEEECCCCCCCS------STHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHcCCC--CEEEECCCCCCCC------CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEc
Confidence            5  356677888888864  5999999987532      25789999999999999999999999998876433499999


Q ss_pred             cccccccc
Q 028656          194 KAELMCSV  201 (206)
Q Consensus       194 S~~~~~~~  201 (206)
                      |.++..+.
T Consensus       158 S~~~~~~~  165 (278)
T 3sx2_A          158 SSAGLAGV  165 (278)
T ss_dssp             CGGGTSCC
T ss_pred             cHHhcCCC
Confidence            99988775

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=99.94  E-value=2.3e-26  Score=180.85  Aligned_cols=144  Identities=21%  Similarity=0.243  Sum_probs=123.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++     +.++..+.+|++|.  +++.++.+.+.
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            356999999999999999999999999999999999998887776665     34578889999975  35666777777


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++ ++ ||++||..+..+.|..
T Consensus        78 ~g~--id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~-iv~isS~~~~~~~~~~  148 (253)
T 1hxh_A           78 LGT--LNVLVNNAGILLP--GDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GS-IINMASVSSWLPIEQY  148 (253)
T ss_dssp             HCS--CCEEEECCCCCCC--BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EE-EEEECCGGGTSCCTTB
T ss_pred             cCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CE-EEEEcchhhcCCCCCC
Confidence            886  5599999998754  4588899999999999999999999999999998776 66 9999999998877643

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=99.94  E-value=4.3e-26  Score=182.86  Aligned_cols=149  Identities=21%  Similarity=0.162  Sum_probs=123.7

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEE-cChhhHHHHHHHHHHhcCCceEEEEEEecCCCc-----------
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL-----------  117 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----------  117 (206)
                      ++++|+++||||++|||+++|++|+++|++|++++ |+.++++++.+++... .+.++..+.+|+++..           
T Consensus         6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~   84 (291)
T 1e7w_A            6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNAR-RPNSAITVQADLSNVATAPVSGADGSA   84 (291)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH-STTCEEEEECCCSSSCBCCCC----CC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhh-cCCeeEEEEeecCCccccccccccccc
Confidence            36799999999999999999999999999999999 9999988888888633 2457888999999742           


Q ss_pred             --------hHHHHHHHHHhcCCCccEEEEeccccCCcccccccCC--------------HHHHHHHHhhhhhHHHHHHHH
Q 028656          118 --------DEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVD--------------QVLLKNLIKVNVEGTTKVTQA  175 (206)
Q Consensus       118 --------~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~--------------~~~~~~~~~~N~~g~~~~~~~  175 (206)
                              ++.++.+.+.+++  +|++|||||+...  .++.+.+              .++|++++++|+.|++.++++
T Consensus        85 ~~~~~~~v~~~~~~~~~~~g~--iD~lvnnAg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~  160 (291)
T 1e7w_A           85 PVTLFTRCAELVAACYTHWGR--CDVLVNNASSFYP--TPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKA  160 (291)
T ss_dssp             CBCHHHHHHHHHHHHHHHHSC--CCEEEECCCCCCC--CCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhcCC--CCEEEECCCCCCC--CChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHH
Confidence                    4556777777776  5599999998764  3477788              899999999999999999999


Q ss_pred             HhhhhHhCC------CCceEEEeccccccccccCC
Q 028656          176 VLPGMLKRK------KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       176 ~~~~~~~~~------~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++|.|++++      .++ ||++||..+..+.|..
T Consensus       161 ~~~~m~~~~~~~~~~~g~-Iv~isS~~~~~~~~~~  194 (291)
T 1e7w_A          161 FAHRVAGTPAKHRGTNYS-IINMVDAMTNQPLLGY  194 (291)
T ss_dssp             HHHHHHTSCGGGSCSCEE-EEEECCTTTTSCCTTC
T ss_pred             HHHHHHhcCCCCCCCCcE-EEEEechhhcCCCCCC
Confidence            999998776      566 9999999998887754

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=99.94  E-value=1.3e-26  Score=181.66  Aligned_cols=148  Identities=20%  Similarity=0.352  Sum_probs=113.8

Q ss_pred             CCcccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHH
Q 028656           45 PAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERI  124 (206)
Q Consensus        45 ~~~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  124 (206)
                      +..+.+.++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++     ..++....+|+++.  +.++++
T Consensus         6 ~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~--~~~~~~   78 (249)
T 3f9i_A            6 HHHMIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTIEVCNLANK--EECSNL   78 (249)
T ss_dssp             ---CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSH--HHHHHH
T ss_pred             ccccccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----ccCccEEEcCCCCH--HHHHHH
Confidence            34456678999999999999999999999999999999999999888877766     34577888999876  556666


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.++..+.|..
T Consensus        79 ~~~~~~--id~li~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  153 (249)
T 3f9i_A           79 ISKTSN--LDILVCNAGITSD--TLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGR-IINISSIVGIAGNPGQ  153 (249)
T ss_dssp             HHTCSC--CSEEEECCC---------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCCCC--CCSCS
T ss_pred             HHhcCC--CCEEEECCCCCCC--CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcE-EEEEccHHhccCCCCC
Confidence            666654  6699999998865  3467888899999999999999999999999998887787 9999999999888754

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=99.94  E-value=8.8e-27  Score=184.25  Aligned_cols=148  Identities=16%  Similarity=0.198  Sum_probs=125.2

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC---hhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN---PDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVE  122 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~  122 (206)
                      .++++||+++||||++|||+++|++|+++|++|++++|+   .++++++.++++..  +.++..+.+|++|.  +++.++
T Consensus         6 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~   83 (262)
T 3ksu_A            6 YHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ--GAKVALYQSDLSNEEEVAKLFD   83 (262)
T ss_dssp             CSCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT--TCEEEEEECCCCSHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHH
Confidence            456789999999999999999999999999999998775   45667777777653  56889999999985  366677


Q ss_pred             HHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          123 RIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       123 ~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      ++.+.+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|  ++.|+ ||++||.++..+.|
T Consensus        84 ~~~~~~g~--iD~lvnnAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m--~~~g~-iv~isS~~~~~~~~  156 (262)
T 3ksu_A           84 FAEKEFGK--VDIAINTVGKVLK--KPIVETSEAEFDAMDTINNKVAYFFIKQAAKHM--NPNGH-IITIATSLLAAYTG  156 (262)
T ss_dssp             HHHHHHCS--EEEEEECCCCCCS--SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTE--EEEEE-EEEECCCHHHHHHC
T ss_pred             HHHHHcCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhh--cCCCE-EEEEechhhccCCC
Confidence            88888885  6699999999865  458899999999999999999999999999998  33466 99999999888877


Q ss_pred             CC
Q 028656          203 FH  204 (206)
Q Consensus       203 ~~  204 (206)
                      .+
T Consensus       157 ~~  158 (262)
T 3ksu_A          157 FY  158 (262)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=99.94  E-value=3.8e-26  Score=181.40  Aligned_cols=151  Identities=27%  Similarity=0.414  Sum_probs=127.1

Q ss_pred             CCcccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHH
Q 028656           45 PAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVE  122 (206)
Q Consensus        45 ~~~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~  122 (206)
                      +.+..++++|+++||||++|||++++++|+++|++|++++|+.++++++.+++++.  +.++..+.+|++|.  +++.++
T Consensus        23 ~~~~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~  100 (272)
T 1yb1_A           23 PKRRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNREDIYSSAK  100 (272)
T ss_dssp             --CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCcccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhc--CCeEEEEEeeCCCHHHHHHHHH
Confidence            34456688999999999999999999999999999999999999888888888764  45788899999975  255566


Q ss_pred             HHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          123 RIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       123 ~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      .+.+.+++  +|++|||||+...  .++.+.+.+++++.+++|+.|++.+++.++|.|++++.++ ||++||..+..+.|
T Consensus       101 ~~~~~~g~--iD~li~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~-iv~isS~~~~~~~~  175 (272)
T 1yb1_A          101 KVKAEIGD--VSILVNNAGVVYT--SDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGH-IVTVASAAGHVSVP  175 (272)
T ss_dssp             HHHHHTCC--CSEEEECCCCCCC--CCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEE-EEEECCCC-CCCHH
T ss_pred             HHHHHCCC--CcEEEECCCcCCC--cchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCE-EEEEechhhcCCCC
Confidence            67777775  5599999998764  3477888999999999999999999999999998887777 99999999887755

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=99.94  E-value=4.6e-26  Score=185.37  Aligned_cols=144  Identities=22%  Similarity=0.320  Sum_probs=120.9

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC-----hhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-----PDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVER  123 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~  123 (206)
                      +++|+++||||++|||+++|++|+++|++|++++|+     .++++++.+.+...  +.++..+.+|++|.  +++.+++
T Consensus         3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~--~~~~~~~~~Dvtd~~~v~~~~~~   80 (324)
T 3u9l_A            3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDN--DVDLRTLELDVQSQVSVDRAIDQ   80 (324)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHH--TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHHH
Confidence            468999999999999999999999999999998886     34556666655553  56788999999985  3667778


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      +.+.++++  |++|||||+...  +++++.+.+++++++++|+.|++.++++++|.|++++.|+ ||++||.++..+.
T Consensus        81 ~~~~~g~i--D~lVnnAG~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~-iV~isS~~~~~~~  153 (324)
T 3u9l_A           81 IIGEDGRI--DVLIHNAGHMVF--GPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGL-LIWISSSSSAGGT  153 (324)
T ss_dssp             HHHHHSCC--SEEEECCCCCBC--SCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCC
T ss_pred             HHHHcCCC--CEEEECCCcCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCE-EEEEecchhccCC
Confidence            88888864  599999998765  4588999999999999999999999999999999888787 9999999988543

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=99.94  E-value=2e-26  Score=182.91  Aligned_cols=142  Identities=23%  Similarity=0.324  Sum_probs=118.8

Q ss_pred             CcccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHH
Q 028656           46 AKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVER  123 (206)
Q Consensus        46 ~~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~  123 (206)
                      +.+.+.+||+++||||++|||+++|++|+++|++|++++|+.+..            ......+.+|++|.  +++.+++
T Consensus         7 ~~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~------------~~~~~~~~~Dv~~~~~v~~~~~~   74 (269)
T 3vtz_A            7 HHMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD------------VNVSDHFKIDVTNEEEVKEAVEK   74 (269)
T ss_dssp             ---CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C------------TTSSEEEECCTTCHHHHHHHHHH
T ss_pred             ccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc------------cCceeEEEecCCCHHHHHHHHHH
Confidence            344557899999999999999999999999999999999987543            12346788999985  3566778


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +.+.++++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.++..+.|.
T Consensus        75 ~~~~~g~i--D~lv~nAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~  149 (269)
T 3vtz_A           75 TTKKYGRI--DILVNNAGIEQY--SPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGS-IINIASVQSYAATKN  149 (269)
T ss_dssp             HHHHHSCC--CEEEECCCCCCC--CCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSBCTT
T ss_pred             HHHHcCCC--CEEEECCCcCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCE-EEEECchhhccCCCC
Confidence            88888864  599999998765  4588999999999999999999999999999999888787 999999999988775


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      .
T Consensus       150 ~  150 (269)
T 3vtz_A          150 A  150 (269)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.94  E-value=5.6e-26  Score=178.94  Aligned_cols=141  Identities=25%  Similarity=0.315  Sum_probs=119.9

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.++ ++..+++.      . ..+.+|++|.  +++.++.+.+.+
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~------~-~~~~~D~~~~~~~~~~~~~~~~~~   75 (256)
T 2d1y_A            4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIG------G-AFFQVDLEDERERVRFVEEAAYAL   75 (256)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHT------C-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhh------C-CEEEeeCCCHHHHHHHHHHHHHHc
Confidence            568999999999999999999999999999999999877 65555442      3 6788999975  356667777778


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+..+.|..
T Consensus        76 g~--iD~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~-iv~isS~~~~~~~~~~  146 (256)
T 2d1y_A           76 GR--VDVLVNNAAIAAP--GSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGA-IVNVASVQGLFAEQEN  146 (256)
T ss_dssp             SC--CCEEEECCCCCCC--BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEE-EEEECCGGGTSBCTTB
T ss_pred             CC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcE-EEEEccccccCCCCCC
Confidence            86  5599999998754  3478899999999999999999999999999998877677 9999999998877643

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=99.94  E-value=3.8e-26  Score=179.77  Aligned_cols=145  Identities=27%  Similarity=0.321  Sum_probs=122.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.+  ++..+++...  +.++..+.+|++|.  +++.++++.+.+
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~   77 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARH--GVKAVHHPADLSDVAQIEALFALAEREF   77 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHTT--SCCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHhc--CCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999999999999999876  4455555542  45678889999975  356667777788


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.++ ||++||..+..+.|..
T Consensus        78 g~--id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  148 (255)
T 2q2v_A           78 GG--VDILVNNAGIQHV--APVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGR-IINIASVHGLVGSTGK  148 (255)
T ss_dssp             SS--CSEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEE-EEEECCGGGTSCCTTB
T ss_pred             CC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcE-EEEEcCchhccCCCCc
Confidence            86  5599999998754  4478899999999999999999999999999998887677 9999999998877643

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=99.94  E-value=6.1e-26  Score=180.07  Aligned_cols=147  Identities=20%  Similarity=0.235  Sum_probs=123.5

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC-hhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      +.+++||+++||||++|||+++|++|+++|++|++++++ .+.++++.++++..  +.++..+.+|++|.  +++.++++
T Consensus        13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~   90 (270)
T 3is3_A           13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKAL--GSDAIAIKADIRQVPEIVKLFDQA   90 (270)
T ss_dssp             TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            345789999999999999999999999999999998764 56677788888764  56788899999985  36677888


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccc-ccccccC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE-LMCSVRF  203 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~-~~~~~~~  203 (206)
                      .+.++++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++  .|+ ||++||.. +..+.|.
T Consensus        91 ~~~~g~i--d~lvnnAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~--~g~-iv~isS~~~~~~~~~~  163 (270)
T 3is3_A           91 VAHFGHL--DIAVSNSGVVSF--GHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTE--GGR-IVLTSSNTSKDFSVPK  163 (270)
T ss_dssp             HHHHSCC--CEEECCCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT--TCE-EEEECCTTTTTCCCTT
T ss_pred             HHHcCCC--CEEEECCCCCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc--CCe-EEEEeCchhccCCCCC
Confidence            8888864  599999999865  45889999999999999999999999999999854  466 99999988 5555554

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.94  E-value=4.6e-26  Score=178.34  Aligned_cols=141  Identities=19%  Similarity=0.284  Sum_probs=119.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++     +  +..+.+|++|.  +++.++.+.+.
T Consensus         2 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~--~~~~~~D~~~~~~~~~~~~~~~~~   74 (245)
T 1uls_A            2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-----G--AHPVVMDVADPASVERGFAEALAH   74 (245)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----T--CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----C--CEEEEecCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999999988777655433     2  56788999975  35666777788


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.. ..+.|.
T Consensus        75 ~g~--id~lvn~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~-iv~isS~~-~~~~~~  144 (245)
T 1uls_A           75 LGR--LDGVVHYAGITRD--NFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGS-IVLTASRV-YLGNLG  144 (245)
T ss_dssp             HSS--CCEEEECCCCCCC--CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEE-EEEECCGG-GGCCTT
T ss_pred             cCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCE-EEEEccch-hcCCCC
Confidence            886  4599999998754  3488899999999999999999999999999998777677 99999988 666654

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.94  E-value=6.8e-26  Score=180.66  Aligned_cols=147  Identities=22%  Similarity=0.372  Sum_probs=124.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcC-CceEEEEEEecCCC--chHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYA-KTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++...+. +.++..+.+|++|.  +++.++++.+.
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            5699999999999999999999999999999999999988888887765321 12688899999985  35666777788


Q ss_pred             hcCCCccEEEEeccccCCcccc----cccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc-c
Q 028656          128 IEGLDVGVLINNVGISYPYARF----FHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV-R  202 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~----~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~-~  202 (206)
                      +++  +|++|||||+...  .+    +.+.+.++|++++++|+.|++.++++++|.|++++ ++ ||++||..+..+. |
T Consensus        84 ~g~--iD~lv~nAg~~~~--~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~-iv~isS~~~~~~~~~  157 (280)
T 1xkq_A           84 FGK--IDVLVNNAGAAIP--DAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GE-IVNVSSIVAGPQAQP  157 (280)
T ss_dssp             HSC--CCEEEECCCCCCC--CTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CE-EEEECCGGGSSSCCC
T ss_pred             cCC--CCEEEECCCCCCC--CCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-Cc-EEEecCccccCCCCC
Confidence            886  4599999998754  33    67889999999999999999999999999998776 77 9999999988776 5


Q ss_pred             C
Q 028656          203 F  203 (206)
Q Consensus       203 ~  203 (206)
                      .
T Consensus       158 ~  158 (280)
T 1xkq_A          158 D  158 (280)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=6.1e-26  Score=178.57  Aligned_cols=142  Identities=24%  Similarity=0.270  Sum_probs=121.9

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      ||+++||||++|||+++|++|+++|  ++|++.+|+.++++++.+++     +.++..+.+|++|.  +++.++++.+.+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY-----GDRFFYVVGDITEDSVLKQLVNAAVKGH   76 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH-----GGGEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh-----CCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            7899999999999999999999985  78999999998888777665     34688899999985  366778888888


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  |++|||||+..+. .++.+.+.++|++++++|+.|++.++++++|.|++++ |+ ||++||..+..+.|..
T Consensus        77 g~i--d~lvnnAg~~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~-iv~isS~~~~~~~~~~  147 (254)
T 3kzv_A           77 GKI--DSLVANAGVLEPV-QNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GN-VVFVSSDACNMYFSSW  147 (254)
T ss_dssp             SCC--CEEEEECCCCCCC-TTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CE-EEEECCSCCCCSSCCS
T ss_pred             CCc--cEEEECCcccCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-Ce-EEEEcCchhccCCCCc
Confidence            864  5999999986532 4588999999999999999999999999999998765 76 9999999999887754

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=99.94  E-value=7.7e-26  Score=179.80  Aligned_cols=147  Identities=18%  Similarity=0.135  Sum_probs=118.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-ChhhHHHHHHHHHHhcCCceEEEEEEecCCC----c--hHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD----L--DEGVER  123 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~--~~~~~~  123 (206)
                      +++|+++||||++|||++++++|+++|++|++++| +.++++++.+++++.. +.++..+.+|+++.    .  ++.+++
T Consensus         9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~   87 (276)
T 1mxh_A            9 SECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIIDC   87 (276)
T ss_dssp             --CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhc-CCceEEEeccCCCccccHHHHHHHHHH
Confidence            56999999999999999999999999999999999 8888888888886642 34678899999976    3  556677


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccCCH-----------HHHHHHHhhhhhHHHHHHHHHhhhhHhCCC------C
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEVDQ-----------VLLKNLIKVNVEGTTKVTQAVLPGMLKRKK------G  186 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~-----------~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~------g  186 (206)
                      +.+.+++  +|++|||||+...  .++.+.+.           ++|++++++|+.|++.++++++|.|+ ++.      +
T Consensus        88 ~~~~~g~--id~lv~nAg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~~~~~~~~g  162 (276)
T 1mxh_A           88 SFRAFGR--CDVLVNNASAYYP--TPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQG-EGGAWRSRNL  162 (276)
T ss_dssp             HHHHHSC--CCEEEECCCCCCC--CCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC--------CCCE
T ss_pred             HHHhcCC--CCEEEECCCCCCC--CCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHh-cCCCCCCCCc
Confidence            7777886  5599999998764  34777788           99999999999999999999999987 444      5


Q ss_pred             ceEEEeccccccccccCC
Q 028656          187 LSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       187 ~~iv~isS~~~~~~~~~~  204 (206)
                      + ||++||..+..+.|.+
T Consensus       163 ~-iv~isS~~~~~~~~~~  179 (276)
T 1mxh_A          163 S-VVNLCDAMTDLPLPGF  179 (276)
T ss_dssp             E-EEEECCGGGGSCCTTC
T ss_pred             E-EEEECchhhcCCCCCC
Confidence            5 9999999998887754

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.94  E-value=3.5e-26  Score=181.37  Aligned_cols=147  Identities=22%  Similarity=0.315  Sum_probs=125.2

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEE-cChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++|+++||||++|||+++|++|+++|++|++++ |+.+..++..+++..  .+.++.++.+|++|.  +++.++.+.+.
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  100 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERD--AGRDFKAYAVDVADFESCERCAEKVLAD  100 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHT--TTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHh--cCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            6799999999999999999999999999999998 556666666666654  356788899999985  36667888888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+...  .++.+.+.++|++++++|+.|++.+++.++|.|++++.|+ ||++||.++..+.|..
T Consensus       101 ~g~--id~li~nAg~~~~--~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  172 (269)
T 3gk3_A          101 FGK--VDVLINNAGITRD--ATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGR-IVNIGSVNGSRGAFGQ  172 (269)
T ss_dssp             HSC--CSEEEECCCCCCC--BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCHHHHHCCTTB
T ss_pred             cCC--CCEEEECCCcCCC--cchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCE-EEEeCChhhccCCCCc
Confidence            886  4599999998865  3488899999999999999999999999999998887777 9999999998887754

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=99.94  E-value=1.1e-25  Score=178.84  Aligned_cols=147  Identities=20%  Similarity=0.271  Sum_probs=123.4

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC-hhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      .++++||+++||||++|||+++|++|+++|++|++++++ .++.+++.+++++.  +.++..+.+|++|.  +++.++++
T Consensus        26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~  103 (271)
T 3v2g_A           26 SISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQA--GGRAVAIRADNRDAEAIEQAIRET  103 (271)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHH
Confidence            355789999999999999999999999999999999765 46677788887764  56788999999985  36677888


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc-ccC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS-VRF  203 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~-~~~  203 (206)
                      .+.+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|.+  .|+ ||++||..+..+ .|.
T Consensus       104 ~~~~g~--iD~lvnnAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~--~g~-iv~isS~~~~~~~~~~  176 (271)
T 3v2g_A          104 VEALGG--LDILVNSAGIWHS--APLEETTVADFDEVMAVNFRAPFVAIRSASRHLGD--GGR-IITIGSNLAELVPWPG  176 (271)
T ss_dssp             HHHHSC--CCEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT--TCE-EEEECCGGGTCCCSTT
T ss_pred             HHHcCC--CcEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc--CCE-EEEEeChhhccCCCCC
Confidence            888886  4599999999765  45889999999999999999999999999998843  466 999999877655 443

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=99.94  E-value=3.7e-26  Score=182.07  Aligned_cols=144  Identities=24%  Similarity=0.348  Sum_probs=123.9

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++     +.++..+.+|+++.  +++.++++.+.+
T Consensus         3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~~~   77 (281)
T 3m1a_A            3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY-----PDRAEAISLDVTDGERIDVVAADVLARY   77 (281)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHC-----TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCCceEEEeeCCCHHHHHHHHHHHHHhC
Confidence            46899999999999999999999999999999999998877765543     44688899999985  356667777788


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||+...  .++.+.+.++|++++++|+.|++.+++.++|.|++++.++ ||++||..+..+.|..
T Consensus        78 g~--id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~~  148 (281)
T 3m1a_A           78 GR--VDVLVNNAGRTQV--GAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGS-VVNISSFGGQLSFAGF  148 (281)
T ss_dssp             SC--CSEEEECCCCEEE--CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTCCCTTC
T ss_pred             CC--CCEEEECCCcCCC--CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCE-EEEEcCccccCCCCCc
Confidence            86  4599999998754  4488999999999999999999999999999999887777 9999999999887754

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=99.94  E-value=6.6e-26  Score=180.94  Aligned_cols=146  Identities=19%  Similarity=0.281  Sum_probs=120.9

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++     +.++..+.+|+++.  +++.++++.+.
T Consensus         2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (281)
T 3zv4_A            2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH-----GGNAVGVVGDVRSLQDQKRAAERCLAA   76 (281)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----BTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHc-----CCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            467999999999999999999999999999999999998887765543     45678899999985  36677888888


Q ss_pred             hcCCCccEEEEeccccCCcc---cccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYA---RFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~---~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+.....   ....+.+.++|++++++|+.|++.++++++|+|++++ |+ ||++||..+..+.|..
T Consensus        77 ~g~--iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-g~-iv~isS~~~~~~~~~~  152 (281)
T 3zv4_A           77 FGK--IDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR-GS-VVFTISNAGFYPNGGG  152 (281)
T ss_dssp             HSC--CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CE-EEEECCGGGTSSSSSC
T ss_pred             cCC--CCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-Ce-EEEEecchhccCCCCC
Confidence            886  459999999865321   1123455678999999999999999999999998764 66 9999999999887754

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.94  E-value=5.1e-26  Score=181.03  Aligned_cols=148  Identities=22%  Similarity=0.370  Sum_probs=117.9

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhc-CCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKY-AKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.++++++.+++.... .+.++..+.+|++|.  +++.++.+.+.
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999998888877774311 245688899999975  35666777788


Q ss_pred             hcCCCccEEEEeccccCCcccccccC----CHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccc-ccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEV----DQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAEL-MCSVR  202 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~----~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~-~~~~~  202 (206)
                      +++  +|++|||||+...  .++.+.    +.++|++++++|+.|++.++++++|.|++++ |+ ||++||..+ ..+.|
T Consensus        84 ~g~--id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~-iv~isS~~~~~~~~~  157 (278)
T 1spx_A           84 FGK--LDILVNNAGAAIP--DSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GE-IVNISSIASGLHATP  157 (278)
T ss_dssp             HSC--CCEEEECCC---------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CE-EEEECCTTSSSSCCT
T ss_pred             cCC--CCEEEECCCCCCC--cccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-Ce-EEEEecccccccCCC
Confidence            886  4599999998754  346677    9999999999999999999999999998765 76 999999988 77766


Q ss_pred             CC
Q 028656          203 FH  204 (206)
Q Consensus       203 ~~  204 (206)
                      ..
T Consensus       158 ~~  159 (278)
T 1spx_A          158 DF  159 (278)
T ss_dssp             TS
T ss_pred             Cc
Confidence            43

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=99.94  E-value=2.1e-25  Score=175.48  Aligned_cols=151  Identities=22%  Similarity=0.324  Sum_probs=128.0

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      +.+++++|+++||||++|||++++++|+++|++|++++|+.++.++..++++..  +.++..+.+|++|.  .++.++++
T Consensus         7 ~~~~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~   84 (260)
T 3awd_A            7 EKLRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRME--GHDVSSVVMDVTNTESVQNAVRSV   84 (260)
T ss_dssp             GGGCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHH
Confidence            345678999999999999999999999999999999999998888888887663  45688899999985  24566777


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+.+++  +|++|||||+... ..++.+.+.+++++.+++|+.|++.+++++.|.|++++.++ ||++||..+..+.|.
T Consensus        85 ~~~~~~--id~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~  159 (260)
T 3awd_A           85 HEQEGR--VDILVACAGICIS-EVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGV-IVAIGSMSGLIVNRP  159 (260)
T ss_dssp             HHHHSC--CCEEEECCCCCCC-SCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCSS
T ss_pred             HHHcCC--CCEEEECCCCCCC-CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCE-EEEEecchhcccCCC
Confidence            777775  5599999998752 23478889999999999999999999999999998877777 999999998877664

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=99.94  E-value=2.6e-26  Score=182.05  Aligned_cols=147  Identities=24%  Similarity=0.322  Sum_probs=122.1

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEE-cChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      +..++|+++||||++|||+++|++|+++|++|++.+ |+.+..+++.++++..  +.++..+.+|+++.  +++.++++.
T Consensus        23 m~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~  100 (267)
T 3u5t_A           23 MMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAA--GGKALTAQADVSDPAAVRRLFATAE  100 (267)
T ss_dssp             ----CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            456799999999999999999999999999999984 5666778888777764  56788899999985  356677788


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +.+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++  .|+ ||++||..+..+.|..
T Consensus       101 ~~~g~--iD~lvnnAG~~~~--~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~--~g~-iv~isS~~~~~~~~~~  172 (267)
T 3u5t_A          101 EAFGG--VDVLVNNAGIMPL--TTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRV--GGR-IINMSTSQVGLLHPSY  172 (267)
T ss_dssp             HHHSC--EEEEEECCCCCCC--CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE--EEE-EEEECCTHHHHCCTTC
T ss_pred             HHcCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCe-EEEEeChhhccCCCCc
Confidence            88885  6699999999765  45889999999999999999999999999999854  366 9999999988877753

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=99.94  E-value=5.7e-26  Score=181.77  Aligned_cols=151  Identities=19%  Similarity=0.213  Sum_probs=119.5

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh-hhHHHHHHHHHHhcCCceEEEEEEecCC----Cc--hHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-DKLKDVSDSIQAKYAKTQIKSVVVDFSG----DL--DEG  120 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~--~~~  120 (206)
                      ..++++|+++||||++|||+++|++|+++|++|++++|+. ++++++.+++... .+.++..+.+|+++    ..  ++.
T Consensus        18 ~~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~~~~~~~~~v~~~   96 (288)
T 2x9g_A           18 GSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKE-RSNTAVVCQADLTNSNVLPASCEEI   96 (288)
T ss_dssp             ----CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHH-STTCEEEEECCCSCSTTHHHHHHHH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhh-cCCceEEEEeecCCccCCHHHHHHH
Confidence            3457899999999999999999999999999999999998 8888888877633 24578889999998    32  455


Q ss_pred             HHHHHHHhcCCCccEEEEeccccCCccccc-----cc-----CCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC------
Q 028656          121 VERIKEAIEGLDVGVLINNVGISYPYARFF-----HE-----VDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK------  184 (206)
Q Consensus       121 ~~~~~~~~~~~~id~lvnnAg~~~~~~~~~-----~~-----~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~------  184 (206)
                      ++.+.+.+++  +|++|||||+....  ++     .+     .+.++|++++++|+.|++.++++++|.|++++      
T Consensus        97 ~~~~~~~~g~--iD~lvnnAG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~  172 (288)
T 2x9g_A           97 INSCFRAFGR--CDVLVNNASAFYPT--PLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSS  172 (288)
T ss_dssp             HHHHHHHHSC--CCEEEECCCCCCCC--CSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CC
T ss_pred             HHHHHHhcCC--CCEEEECCCCCCCC--ccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCC
Confidence            5666777775  55999999987543  35     56     78899999999999999999999999998765      


Q ss_pred             CCceEEEeccccccccccCC
Q 028656          185 KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       185 ~g~~iv~isS~~~~~~~~~~  204 (206)
                      .|+ ||++||..+..+.|..
T Consensus       173 ~g~-iv~isS~~~~~~~~~~  191 (288)
T 2x9g_A          173 NLS-IVNLCDAMVDQPCMAF  191 (288)
T ss_dssp             CEE-EEEECCTTTTSCCTTC
T ss_pred             CeE-EEEEecccccCCCCCC
Confidence            456 9999999998877754

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=99.94  E-value=1.2e-25  Score=183.17  Aligned_cols=148  Identities=21%  Similarity=0.164  Sum_probs=123.5

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEE-cChhhHHHHHHHHHHhcCCceEEEEEEecCCC-------------
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD-------------  116 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------------  116 (206)
                      +++|+++||||++|||+++|++|+++|++|++++ |+.++++++.+++... .+.++..+.+|+++.             
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~~  122 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNAR-RPNSAITVQADLSNVATAPVSGADGSAP  122 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH-STTCEEEEECCCSSSCBCC-------CC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhh-cCCeEEEEEeeCCCchhccccccccccc
Confidence            6799999999999999999999999999999999 9999888888887633 245688899999974             


Q ss_pred             ------chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCC--------------HHHHHHHHhhhhhHHHHHHHHH
Q 028656          117 ------LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVD--------------QVLLKNLIKVNVEGTTKVTQAV  176 (206)
Q Consensus       117 ------~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~--------------~~~~~~~~~~N~~g~~~~~~~~  176 (206)
                            +++.++.+.+.+++  +|++|||||+...  .++.+.+              .++|++++++|+.|++.+++++
T Consensus       123 ~~~~~~v~~~~~~~~~~~g~--iD~lVnnAG~~~~--~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~  198 (328)
T 2qhx_A          123 VTLFTRCAELVAACYTHWGR--CDVLVNNASSFYP--TPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAF  198 (328)
T ss_dssp             BCHHHHHHHHHHHHHHHHSC--CCEEEECCCCCCC--CCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCC--CCEEEECCCCCCC--CChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence                  24556777777876  5599999998764  3477777              8999999999999999999999


Q ss_pred             hhhhHhCC------CCceEEEeccccccccccCC
Q 028656          177 LPGMLKRK------KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       177 ~~~~~~~~------~g~~iv~isS~~~~~~~~~~  204 (206)
                      +|.|.+++      .++ ||++||..+..+.|..
T Consensus       199 ~~~m~~~~~~~~~~~g~-IV~isS~~~~~~~~~~  231 (328)
T 2qhx_A          199 AHRVAGTPAKHRGTNYS-IINMVDAMTNQPLLGY  231 (328)
T ss_dssp             HHHHHHSCGGGSCSCEE-EEEECCTTTTSCCTTC
T ss_pred             HHHHHhcCCcCCCCCcE-EEEECchhhccCCCCc
Confidence            99998776      566 9999999998887643

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=2.8e-26  Score=181.03  Aligned_cols=147  Identities=16%  Similarity=0.240  Sum_probs=122.9

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEE-EcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      .+++||+++||||++|||+++|++|+++|++|+++ +|+.+..++..+++++.  +.++..+.+|++|.  +++.++++.
T Consensus         4 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~   81 (259)
T 3edm_A            4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKL--GRSALAIKADLTNAAEVEAAISAAA   81 (259)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTT--TSCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            35679999999999999999999999999999998 56667777777777664  45678899999985  366778888


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc-ccccC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM-CSVRF  203 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~-~~~~~  203 (206)
                      +.+++  +|++|||||+... ..++.+.+.++|++++++|+.|++.++++++|.|++  .|+ ||++||.++. .+.|.
T Consensus        82 ~~~g~--id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~--~g~-iv~isS~~~~~~~~~~  154 (259)
T 3edm_A           82 DKFGE--IHGLVHVAGGLIA-RKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAK--GGA-IVTFSSQAGRDGGGPG  154 (259)
T ss_dssp             HHHCS--EEEEEECCCCCCC-CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEE-EEEECCHHHHHCCSTT
T ss_pred             HHhCC--CCEEEECCCccCC-CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCE-EEEEcCHHhccCCCCC
Confidence            88885  6699999998733 245889999999999999999999999999999865  456 9999999887 55554

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=99.94  E-value=3.7e-26  Score=179.30  Aligned_cols=140  Identities=24%  Similarity=0.426  Sum_probs=116.8

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHH----Hhc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKE----AIE  129 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~----~~~  129 (206)
                      |+++||||++|||++++++|+++|++|++++|+.++++++.+++     +.++..+.+|++|.  +.++.+.+    .++
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~--~~v~~~~~~~~~~~g   73 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNR--AAIEEMLASLPAEWC   73 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCH--HHHHHHHHTSCTTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cCceEEEEcCCCCH--HHHHHHHHHHHHhCC
Confidence            68999999999999999999999999999999998888776665     23578889999986  33444433    344


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                        ++|++|||||+... ..++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||.++..+.|..
T Consensus        74 --~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~-iv~isS~~~~~~~~~~  144 (248)
T 3asu_A           74 --NIDILVNNAGLALG-MEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGH-IINIGSTAGSWPYAGG  144 (248)
T ss_dssp             --CCCEEEECCCCCCC-CSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE-EEEECCGGGTSCCTTC
T ss_pred             --CCCEEEECCCcCCC-CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCce-EEEEccchhccCCCCC
Confidence              46699999998642 23478899999999999999999999999999998877777 9999999998877643

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=99.94  E-value=1.3e-25  Score=177.42  Aligned_cols=145  Identities=22%  Similarity=0.289  Sum_probs=122.5

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++.     .++..+.+|++|.  +++.++++.+
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~d~~~v~~~~~~~~~   82 (263)
T 3ak4_A            8 FDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE-----NGGFAVEVDVTKRASVDAAMQKAID   82 (263)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCT-----TCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh-----cCCeEEEEeCCCHHHHHHHHHHHHH
Confidence            34679999999999999999999999999999999999887776655442     2567789999975  3566677778


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~  203 (206)
                      .+++  +|++|||||+...  .++.+.+.++|++.+++|+.|++.++++++|.|++++ .++ ||++||..+..+.|.
T Consensus        83 ~~g~--iD~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~  155 (263)
T 3ak4_A           83 ALGG--FDLLCANAGVSTM--RPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGV-IVNTASLAAKVGAPL  155 (263)
T ss_dssp             HHTC--CCEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCE-EEEECCGGGTSCCTT
T ss_pred             HcCC--CCEEEECCCcCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeE-EEEecccccccCCCC
Confidence            8886  4599999998754  3478899999999999999999999999999998876 566 999999998887764

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=99.94  E-value=3.7e-26  Score=185.69  Aligned_cols=148  Identities=20%  Similarity=0.235  Sum_probs=127.2

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC----------hhhHHHHHHHHHHhcCCceEEEEEEecCCC--c
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN----------PDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--L  117 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~----------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~  117 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+          .+.+++..+++...  +.++..+.+|++|.  +
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v  101 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAA--GGEAVADGSNVADWDQA  101 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHT--TCEEEEECCCTTSHHHH
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHH
Confidence            4789999999999999999999999999999999998          67788888888764  56788999999985  3


Q ss_pred             hHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC------CCceEEE
Q 028656          118 DEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK------KGLSMLN  191 (206)
Q Consensus       118 ~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~------~g~~iv~  191 (206)
                      ++.++.+.+.++++  |++|||||+...  .++.+.+.++|++++++|+.|++.+++++.|.|.+.+      .|+ ||+
T Consensus       102 ~~~~~~~~~~~g~i--D~lv~nAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~-IV~  176 (322)
T 3qlj_A          102 AGLIQTAVETFGGL--DVLVNNAGIVRD--RMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGR-IIN  176 (322)
T ss_dssp             HHHHHHHHHHHSCC--CEEECCCCCCCC--CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEE-EEE
T ss_pred             HHHHHHHHHHcCCC--CEEEECCCCCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcE-EEE
Confidence            56678888888864  599999999865  4588999999999999999999999999999987543      245 999


Q ss_pred             eccccccccccCC
Q 028656          192 IGKAELMCSVRFH  204 (206)
Q Consensus       192 isS~~~~~~~~~~  204 (206)
                      +||.++..+.|..
T Consensus       177 isS~~~~~~~~~~  189 (322)
T 3qlj_A          177 TSSGAGLQGSVGQ  189 (322)
T ss_dssp             ECCHHHHHCBTTC
T ss_pred             EcCHHHccCCCCC
Confidence            9999998887754

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=99.94  E-value=1.2e-25  Score=180.53  Aligned_cols=148  Identities=20%  Similarity=0.214  Sum_probs=123.3

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh--hhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP--DKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      .+++||+++||||++|||+++|++|+++|++|++++|+.  +..+++.+.+++.  +.++..+.+|++|.  +++.++++
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~  122 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEEC--GRKAVLLPGDLSDESFARSLVHKA  122 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHT--TCCEEECCCCTTSHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHc--CCcEEEEEecCCCHHHHHHHHHHH
Confidence            346899999999999999999999999999999999873  4466666666553  56788899999985  35667788


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+.++++  |++|||||+.... .++.+.+.|+|++++++|+.|++.++++++|.|.+  .|+ ||++||..+..+.|..
T Consensus       123 ~~~~g~i--D~lv~nAg~~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~--~g~-Iv~isS~~~~~~~~~~  196 (294)
T 3r3s_A          123 REALGGL--DILALVAGKQTAI-PEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPK--GAS-IITTSSIQAYQPSPHL  196 (294)
T ss_dssp             HHHHTCC--CEEEECCCCCCCC-SSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCT--TCE-EEEECCGGGTSCCTTC
T ss_pred             HHHcCCC--CEEEECCCCcCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhc--CCE-EEEECChhhccCCCCc
Confidence            8888865  4999999986532 35889999999999999999999999999998843  366 9999999999888754

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.2e-25  Score=177.32  Aligned_cols=147  Identities=24%  Similarity=0.319  Sum_probs=121.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHH-
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEA-  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~-  127 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.+++++..++++..  +.++..+.+|++|..  ++.++.+.+. 
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSL--GGQCVPVVCDSSQESEVRSLFEQVDREQ   80 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--SSEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc--CCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            46899999999999999999999999999999999999988888888764  457888999999852  4455555554 


Q ss_pred             hcCCCccEEEEecc--ccC---CcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          128 IEGLDVGVLINNVG--ISY---PYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       128 ~~~~~id~lvnnAg--~~~---~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      +++  +|++|||||  +..   ....++.+.+.++|++++++|+.|++.+++.++|.|++++.|+ ||++||..+..+.+
T Consensus        81 ~g~--id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~  157 (260)
T 2qq5_A           81 QGR--LDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGL-IVVISSPGSLQYMF  157 (260)
T ss_dssp             TTC--CCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCE-EEEECCGGGTSCCS
T ss_pred             CCC--ceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcE-EEEEcChhhcCCCC
Confidence            565  559999995  321   0123577889999999999999999999999999998877777 99999998876544

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=99.94  E-value=4.3e-26  Score=181.27  Aligned_cols=146  Identities=24%  Similarity=0.387  Sum_probs=121.0

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      ++ |+++||||++|||+++|++|+++|++|++++|+.++++++.+++..   ..++..+.+|++|..  ++.++.+.+.+
T Consensus        20 ~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   95 (272)
T 2nwq_A           20 MS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSA---KTRVLPLTLDVRDRAAMSAAVDNLPEEF   95 (272)
T ss_dssp             -C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTT---TSCEEEEECCTTCHHHHHHHHHTCCGGG
T ss_pred             cC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc---CCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            45 8999999999999999999999999999999999888887777643   246888999999862  33334444445


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCC-ceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKG-LSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||+... ..++.+.+.++|++++++|+.|++.++++++|.|++++.| + ||++||..+..+.|..
T Consensus        96 g~--iD~lvnnAG~~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~-IV~isS~~~~~~~~~~  168 (272)
T 2nwq_A           96 AT--LRGLINNAGLALG-TDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGAS-IVNLGSVAGKWPYPGS  168 (272)
T ss_dssp             SS--CCEEEECCCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCE-EEEECCGGGTSCCTTC
T ss_pred             CC--CCEEEECCCCCCC-CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE-EEEeCCchhccCCCCC
Confidence            54  5699999998653 1358889999999999999999999999999999888777 6 9999999998877643

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=99.94  E-value=1.7e-25  Score=179.40  Aligned_cols=147  Identities=19%  Similarity=0.295  Sum_probs=122.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh-HHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK-LKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.++ .++..+.++.  .+.++..+.+|++|.  +++.++++.+
T Consensus        44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~  121 (291)
T 3ijr_A           44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEK--EGVKCVLLPGDLSDEQHCKDIVQETVR  121 (291)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT--TTCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh--cCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999998765 4444444444  356788999999985  3667788888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .++++  |++|||||+.... .++++.+.++|++++++|+.|++.++++++|+|++  .++ ||++||..+..+.|..
T Consensus       122 ~~g~i--D~lvnnAg~~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~--~g~-iv~isS~~~~~~~~~~  193 (291)
T 3ijr_A          122 QLGSL--NILVNNVAQQYPQ-QGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQ--GDV-IINTASIVAYEGNETL  193 (291)
T ss_dssp             HHSSC--CEEEECCCCCCCC-SSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCT--TCE-EEEECCTHHHHCCTTC
T ss_pred             HcCCC--CEEEECCCCcCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh--CCE-EEEEechHhcCCCCCC
Confidence            88864  5999999987542 35788999999999999999999999999998843  456 9999999998887754

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.94  E-value=8.3e-26  Score=197.28  Aligned_cols=146  Identities=25%  Similarity=0.308  Sum_probs=122.0

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh---------hhHHHHHHHHHHhcCCceEEEEEEecCC--Cc
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP---------DKLKDVSDSIQAKYAKTQIKSVVVDFSG--DL  117 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~  117 (206)
                      ++++||+++||||++|||+++|++|+++|++|++.+|+.         ++++++.+++.+.  +.+.   .+|.+|  +.
T Consensus         4 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~--g~~~---~~d~~d~~~~   78 (604)
T 2et6_A            4 VDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKN--GGVA---VADYNNVLDG   78 (604)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHT--TCEE---EEECCCTTCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhc--CCeE---EEEcCCHHHH
Confidence            457799999999999999999999999999999998765         6677777777664  2332   246654  34


Q ss_pred             hHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccc
Q 028656          118 DEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAEL  197 (206)
Q Consensus       118 ~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~  197 (206)
                      ++.++.+.+.++++|  ++|||||+...  +++.+.+.|+|++++++|+.|++.++|+++|+|++++.|+ ||++||.++
T Consensus        79 ~~~v~~~~~~~G~iD--iLVnNAGi~~~--~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~-IVnisS~ag  153 (604)
T 2et6_A           79 DKIVETAVKNFGTVH--VIINNAGILRD--ASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGR-IVNTSSPAG  153 (604)
T ss_dssp             HHHHHHHHHHHSCCC--EEEECCCCCCC--BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCHHH
T ss_pred             HHHHHHHHHHcCCCC--EEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCE-EEEECCHHH
Confidence            677888899999755  99999998764  4588999999999999999999999999999999887777 999999999


Q ss_pred             cccccCC
Q 028656          198 MCSVRFH  204 (206)
Q Consensus       198 ~~~~~~~  204 (206)
                      ..+.|.+
T Consensus       154 ~~~~~~~  160 (604)
T 2et6_A          154 LYGNFGQ  160 (604)
T ss_dssp             HHCCTTB
T ss_pred             cCCCCCc
Confidence            9887754

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=99.94  E-value=1.8e-25  Score=176.58  Aligned_cols=150  Identities=21%  Similarity=0.208  Sum_probs=117.0

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      ..+++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++...  +.++..+.+|+++.  .++.++.+
T Consensus         8 ~~~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~   85 (266)
T 1xq1_A            8 QRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK--GFQVTGSVCDASLRPEREKLMQTV   85 (266)
T ss_dssp             CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeeEEEECCCCCHHHHHHHHHHH
Confidence            346678999999999999999999999999999999999999888888887664  45678889999975  35566777


Q ss_pred             HHHh-cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          125 KEAI-EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       125 ~~~~-~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+.+ ++  +|++|||||+...  .++.+.+.++|++.+++|+.|++.++++++|.|++++.++ ||++||..+..+.|.
T Consensus        86 ~~~~~~~--id~li~~Ag~~~~--~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~-iv~isS~~~~~~~~~  160 (266)
T 1xq1_A           86 SSMFGGK--LDILINNLGAIRS--KPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGN-IIFMSSIAGVVSASV  160 (266)
T ss_dssp             HHHHTTC--CSEEEEECCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCE-EEEEC----------
T ss_pred             HHHhCCC--CcEEEECCCCCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcE-EEEEccchhccCCCC
Confidence            7777 54  6699999998754  3477889999999999999999999999999998877777 999999998877664

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=99.94  E-value=5.1e-25  Score=175.38  Aligned_cols=144  Identities=24%  Similarity=0.326  Sum_probs=124.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.++++++.++++..+...++..+.+|+++.  +++.++.+.+.
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  108 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ  108 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            4779999999999999999999999999999999999999888888887755456788899999975  24566677777


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC--CceEEEecccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK--GLSMLNIGKAELM  198 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~~iv~isS~~~~  198 (206)
                      +++  +|++|||||+...  .++.+.+.++|++++++|+.|++.+++.++|.|++++.  ++ ||++||..+.
T Consensus       109 ~g~--iD~vi~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~-iv~isS~~~~  176 (279)
T 1xg5_A          109 HSG--VDICINNAGLARP--DTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGH-IININSMSGH  176 (279)
T ss_dssp             HCC--CSEEEECCCCCCC--CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCE-EEEECCGGGT
T ss_pred             CCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCce-EEEEcChhhc
Confidence            775  5599999998754  34778899999999999999999999999999988764  66 9999999887

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.94  E-value=3.5e-26  Score=199.62  Aligned_cols=146  Identities=21%  Similarity=0.291  Sum_probs=123.2

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      +++||+++||||++|||+++|++|+++|++|++.+|+  ..+++.+++.+.  +.+.....+|++++.++.++.+.++++
T Consensus       319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~--~~~~~~~~i~~~--g~~~~~~~~Dv~~~~~~~~~~~~~~~G  394 (604)
T 2et6_A          319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFK--DATKTVDEIKAA--GGEAWPDQHDVAKDSEAIIKNVIDKYG  394 (604)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSS--CCHHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHHHS
T ss_pred             ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCc--cHHHHHHHHHhc--CCeEEEEEcChHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999999999873  345556666553  456777888884234567788888898


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++|  ++|||||+...  +++.+.+.|+|++++++|+.|++.++|+++|+|++++.|+ ||++||.++..+.|++
T Consensus       395 ~iD--iLVnNAGi~~~--~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~-IVnisS~ag~~~~~~~  464 (604)
T 2et6_A          395 TID--ILVNNAGILRD--RSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGR-IINITSTSGIYGNFGQ  464 (604)
T ss_dssp             CCC--EEEECCCCCCC--BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEE-EEEECCHHHHSCCTTB
T ss_pred             CCC--EEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCE-EEEECChhhccCCCCC
Confidence            655  99999999765  4588999999999999999999999999999998887777 9999999999887754

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=99.93  E-value=3.1e-25  Score=177.07  Aligned_cols=145  Identities=17%  Similarity=0.252  Sum_probs=121.2

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh-HHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK-LKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      +++++|+++||||++|||+++|++|+++|++|++++|+.++ .+++.+++...  +.++..+.+|+++.  +++.++++.
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~  102 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN--GSDAACVKANVGVVEDIVRMFEEAV  102 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHh--CCCeEEEEcCCCCHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999998754 55666666553  45678899999975  356667777


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      +.+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|  ++.|+ ||++||..+..+.+
T Consensus       103 ~~~g~--iD~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~--~~~g~-iv~isS~~~~~~~~  172 (283)
T 1g0o_A          103 KIFGK--LDIVCSNSGVVSF--GHVKDVTPEEFDRVFTINTRGQFFVAREAYKHL--EIGGR-LILMGSITGQAKAV  172 (283)
T ss_dssp             HHHSC--CCEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHS--CTTCE-EEEECCGGGTCSSC
T ss_pred             HHcCC--CCEEEECCCcCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCCe-EEEEechhhccCCC
Confidence            77886  4599999998754  448889999999999999999999999999988  34566 99999999887655

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=99.93  E-value=7.1e-26  Score=179.13  Aligned_cols=147  Identities=16%  Similarity=0.185  Sum_probs=126.3

Q ss_pred             cccCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcChhhH-HHHHHHHHHhcCCceEEEEEEecCCC--chHHHHH
Q 028656           49 LRKYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVER  123 (206)
Q Consensus        49 ~~~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~  123 (206)
                      ++++||+++||||+  +|||+++|++|+++|++|++++|+.++. ++..+++.+.. +.++.++.+|+++.  +++.+++
T Consensus        16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~   94 (267)
T 3gdg_A           16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTY-GIKAKAYKCQVDSYESCEKLVKD   94 (267)
T ss_dssp             HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHH-CCCEECCBCCTTCHHHHHHHHHH
T ss_pred             cCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhc-CCceeEEecCCCCHHHHHHHHHH
Confidence            45789999999999  9999999999999999999999987665 66666766543 56788999999985  3566778


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      +.+.+++  +|++|||||+....  ++.+.+.++|++.+++|+.|++.++++++|.|++++.|+ ||++||.++..+.
T Consensus        95 ~~~~~g~--id~li~nAg~~~~~--~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~  167 (267)
T 3gdg_A           95 VVADFGQ--IDAFIANAGATADS--GILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGS-LVITASMSGHIAN  167 (267)
T ss_dssp             HHHHTSC--CSEEEECCCCCCCS--CTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE-EEEECCGGGTSCC
T ss_pred             HHHHcCC--CCEEEECCCcCCCC--CcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCce-EEEEccccccccC
Confidence            8888875  55999999988653  488999999999999999999999999999999888787 9999999988765

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.93  E-value=1.2e-25  Score=177.81  Aligned_cols=139  Identities=19%  Similarity=0.263  Sum_probs=114.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.+++++..+++     ..++..+.+|++|.  +++.++.+.+.+
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVVADVSDPKAVEAVFAEALEEF   78 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----CSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            56899999999999999999999999999999999998877766544     24678899999975  356667777788


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      ++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.| ++ .|+ ||++||..+. +.|
T Consensus        79 g~--iD~lvnnAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~-~g~-iv~isS~~~~-~~~  144 (263)
T 2a4k_A           79 GR--LHGVAHFAGVAHS--ALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVL-EE-GGS-LVLTGSVAGL-GAF  144 (263)
T ss_dssp             SC--CCEEEEGGGGTTT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-CT-TCE-EEEECCCTTC-CHH
T ss_pred             CC--CcEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHH-hc-CCE-EEEEecchhc-CCC
Confidence            86  4599999998764  347889999999999999999999999999999 44 566 9999999887 544

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=99.93  E-value=5.5e-25  Score=173.30  Aligned_cols=147  Identities=21%  Similarity=0.296  Sum_probs=125.3

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-ChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++|+++||||++|||++++++|+++|++|++++| +.++++++.+++...  +.++.++.+|+++.  .++.++++.+.
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (261)
T 1gee_A            5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            56999999999999999999999999999999999 888888887777653  45788899999975  25566777777


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+...  .++.+.+.+++++.+++|+.|++.++++++|.|++++ .++ ||++||..+..+.|..
T Consensus        83 ~g~--id~li~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~-iv~isS~~~~~~~~~~  155 (261)
T 1gee_A           83 FGK--LDVMINNAGLENP--VSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGT-VINMSSVHEKIPWPLF  155 (261)
T ss_dssp             HSC--CCEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCE-EEEECCGGGTSCCTTC
T ss_pred             cCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCE-EEEeCCHHhcCCCCCc
Confidence            775  5599999998754  3477889999999999999999999999999998876 566 9999999988776643

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=99.93  E-value=2.8e-25  Score=176.41  Aligned_cols=150  Identities=21%  Similarity=0.248  Sum_probs=125.4

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      ...++++|+++||||++|||++++++|+++|++|++++|+.++.++..+++..   ..++.++.+|++|.  .++.++++
T Consensus        10 ~~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~   86 (278)
T 2bgk_A           10 STNRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTT   86 (278)
T ss_dssp             -CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CcccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCC---CCceEEEECCCCCHHHHHHHHHHH
Confidence            34557899999999999999999999999999999999998877766665522   23688899999975  35666777


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      .+.+++  +|++|||||+......++.+.+.+++++.+++|+.|++.++++++|.|++++.++ ||++||..+..+.|
T Consensus        87 ~~~~~~--id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~isS~~~~~~~~  161 (278)
T 2bgk_A           87 IAKHGK--LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGS-IVFTASISSFTAGE  161 (278)
T ss_dssp             HHHHSC--CCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEE-EEEECCGGGTCCCT
T ss_pred             HHHcCC--CCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCe-EEEEeeccccCCCC
Confidence            777775  5599999998754334578889999999999999999999999999998877777 99999999888766

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=99.93  E-value=4.5e-25  Score=173.02  Aligned_cols=146  Identities=24%  Similarity=0.378  Sum_probs=122.1

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceE-EEEEEecCCC--chHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQI-KSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~--~~~~~~~~  124 (206)
                      .+++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++     +.++ ..+.+|++|.  .++.++.+
T Consensus         6 ~~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~   80 (254)
T 2wsb_A            6 VFRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL-----GAAVAARIVADVTDAEAMTAAAAEA   80 (254)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cccceeEEEEecCCHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999998887776665     2345 7889999975  24445555


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+ +++  +|++|||||+...  .++.+.+.+++++++++|+.|++.++++++|.|++++.++ ||++||..+..+.|..
T Consensus        81 ~~-~~~--id~li~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~-iv~isS~~~~~~~~~~  154 (254)
T 2wsb_A           81 EA-VAP--VSILVNSAGIARL--HDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGA-IVNLGSMSGTIVNRPQ  154 (254)
T ss_dssp             HH-HSC--CCEEEECCCCCCC--BCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCSSS
T ss_pred             Hh-hCC--CcEEEECCccCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcE-EEEEecchhccCCCCC
Confidence            55 665  5599999998765  3477889999999999999999999999999998887777 9999999988776643

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=99.93  E-value=2.6e-25  Score=177.75  Aligned_cols=149  Identities=23%  Similarity=0.312  Sum_probs=126.3

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      .++++|+++||||++|||++++++|+++|++|++++|+.++++++.++++..  +.++..+.+|++|.  +++.++.+.+
T Consensus        40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~  117 (285)
T 2c07_A           40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVSKKEEISEVINKILT  117 (285)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc--CCceeEEECCCCCHHHHHHHHHHHHH
Confidence            4477999999999999999999999999999999999998888888877653  45688899999975  2455566666


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+...  .++.+.+.+++++++++|+.|++.+++.++|.|.+++.++ ||++||.++..+.|..
T Consensus       118 ~~~~--id~li~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~-iv~isS~~~~~~~~~~  190 (285)
T 2c07_A          118 EHKN--VDILVNNAGITRD--NLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGR-IINISSIVGLTGNVGQ  190 (285)
T ss_dssp             HCSC--CCEEEECCCCCCC--CCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEE-EEEECCTHHHHCCTTC
T ss_pred             hcCC--CCEEEECCCCCCC--CchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCE-EEEECChhhccCCCCC
Confidence            6675  5599999998754  3478899999999999999999999999999998777677 9999999888776643

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=99.93  E-value=3.7e-25  Score=172.68  Aligned_cols=146  Identities=23%  Similarity=0.317  Sum_probs=124.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-------cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-------NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVE  122 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~  122 (206)
                      ++|+++||||++|||++++++|+++|+       +|++++|+.++++++.+++..  .+.++..+.+|+++.  +++.++
T Consensus         1 ~~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~   78 (244)
T 2bd0_A            1 MKHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA--EGALTDTITADISDMADVRRLTT   78 (244)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHc--cCCeeeEEEecCCCHHHHHHHHH
Confidence            378999999999999999999999999       999999999888888877765  356788999999975  355667


Q ss_pred             HHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          123 RIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       123 ~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      .+.+.+++  +|++|||||+...  .++.+.+.+++++.+++|+.|++.++++++|.|++++.++ ||++||..+..+.|
T Consensus        79 ~~~~~~g~--id~li~~Ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~isS~~~~~~~~  153 (244)
T 2bd0_A           79 HIVERYGH--IDCLVNNAGVGRF--GALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGH-IFFITSVAATKAFR  153 (244)
T ss_dssp             HHHHHTSC--CSEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCT
T ss_pred             HHHHhCCC--CCEEEEcCCcCCc--CccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCE-EEEEecchhcCCCC
Confidence            77777775  5599999998754  3478889999999999999999999999999998777777 99999999988776


Q ss_pred             CC
Q 028656          203 FH  204 (206)
Q Consensus       203 ~~  204 (206)
                      ..
T Consensus       154 ~~  155 (244)
T 2bd0_A          154 HS  155 (244)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=99.93  E-value=2.2e-25  Score=174.16  Aligned_cols=149  Identities=29%  Similarity=0.496  Sum_probs=125.6

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++++|+++||||++|||++++++|+++|++|++++|+.++++++.+++.+.. +.++..+.+|++|.  .++.++++.+
T Consensus         3 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~   81 (248)
T 2pnf_A            3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLLSEESINKAFEEIYN   81 (248)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCCCHHHHHHHHHHHHH
Confidence            35679999999999999999999999999999999999988888777776532 45678899999975  2455666777


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+++  +|++|||||....  .++.+.+.+++++.+++|+.|++.++++++|.|++++.++ ||++||..+..+.|.
T Consensus        82 ~~~~--~d~vi~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~  153 (248)
T 2pnf_A           82 LVDG--IDILVNNAGITRD--KLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGR-IVNISSVVGFTGNVG  153 (248)
T ss_dssp             HSSC--CSEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEE-EEEECCHHHHHCCTT
T ss_pred             hcCC--CCEEEECCCCCCC--CccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcE-EEEEccHHhcCCCCC
Confidence            7775  5599999998764  3477889999999999999999999999999998877777 999999988776654

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.93  E-value=3.7e-25  Score=176.63  Aligned_cols=142  Identities=19%  Similarity=0.275  Sum_probs=119.7

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC------------hhhHHHHHHHHHHhcCCceEEEEEEecCCC
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN------------PDKLKDVSDSIQAKYAKTQIKSVVVDFSGD  116 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (206)
                      .+++||+++||||++|||+++|++|+++|++|++++|+            .+++++..+++...  +.++..+.+|+++.
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~   83 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--GRKAYTAEVDVRDR   83 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT--TSCEEEEECCTTCH
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc--CCceEEEEccCCCH
Confidence            35789999999999999999999999999999999998            66677777777653  56788999999985


Q ss_pred             --chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          117 --LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       117 --~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                        +++.++++.+.++++  |++|||||+....    .+.+.++|++++++|+.|++.++++++|+|  ++.++ ||++||
T Consensus        84 ~~v~~~~~~~~~~~g~i--d~lv~nAg~~~~~----~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~--~~~g~-iv~isS  154 (287)
T 3pxx_A           84 AAVSRELANAVAEFGKL--DVVVANAGICPLG----AHLPVQAFADAFDVDFVGVINTVHAALPYL--TSGAS-IITTGS  154 (287)
T ss_dssp             HHHHHHHHHHHHHHSCC--CEEEECCCCCCCC----TTCCTHHHHHHHHHHTHHHHHHHHHHGGGC--CTTCE-EEEECC
T ss_pred             HHHHHHHHHHHHHcCCC--CEEEECCCcCccc----CcCCHHHHHHHhhhhhhhhHHHHHHHHHHh--hcCcE-EEEecc
Confidence              356677888888864  5999999987543    247889999999999999999999999998  44466 999999


Q ss_pred             ccccccc
Q 028656          195 AELMCSV  201 (206)
Q Consensus       195 ~~~~~~~  201 (206)
                      ..+..+.
T Consensus       155 ~~~~~~~  161 (287)
T 3pxx_A          155 VAGLIAA  161 (287)
T ss_dssp             HHHHHHH
T ss_pred             chhcccc
Confidence            9887765

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.93  E-value=8.5e-26  Score=176.85  Aligned_cols=138  Identities=21%  Similarity=0.341  Sum_probs=117.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.++++++. ++      .++..+.+|++|.  +.++++.+.+++
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~------~~~~~~~~D~~~~--~~~~~~~~~~~~   74 (246)
T 2ag5_A            4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KY------PGIQTRVLDVTKK--KQIDQFANEVER   74 (246)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GS------TTEEEEECCTTCH--HHHHHHHHHCSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hc------cCceEEEeeCCCH--HHHHHHHHHhCC
Confidence            56999999999999999999999999999999999987665443 21      1577889999986  556677777775


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                        +|++|||||+...  .++.+.+.++|++.+++|+.|++.++++++|+|++++.++ ||++||..+..+.|
T Consensus        75 --id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~  141 (246)
T 2ag5_A           75 --LDVLFNVAGFVHH--GTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGN-IINMSSVASSVKGV  141 (246)
T ss_dssp             --CSEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCSBTTTBCC
T ss_pred             --CCEEEECCccCCC--CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce-EEEEechHhCcCCC
Confidence              5599999998765  3588899999999999999999999999999998877777 99999999887765

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=99.93  E-value=1.5e-25  Score=177.08  Aligned_cols=138  Identities=24%  Similarity=0.300  Sum_probs=118.1

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++++|+++||||++|||+++|++|+++|++|++++|+.++.+           ...+..+.+|++|.  +++.++++.+
T Consensus        24 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-----------~~~~~~~~~Dv~d~~~v~~~~~~~~~   92 (260)
T 3un1_A           24 MRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA-----------DPDIHTVAGDISKPETADRIVREGIE   92 (260)
T ss_dssp             HHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS-----------STTEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             hCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc-----------cCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4467999999999999999999999999999999999876432           33578899999985  3566777888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      .+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+..+.+
T Consensus        93 ~~g~--iD~lv~nAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~-iv~isS~~~~~~~~  163 (260)
T 3un1_A           93 RFGR--IDSLVNNAGVFLA--KPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGH-IVSITTSLVDQPMV  163 (260)
T ss_dssp             HHSC--CCEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEE-EEEECCTTTTSCBT
T ss_pred             HCCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcE-EEEEechhhccCCC
Confidence            8886  4599999999865  4588999999999999999999999999999999888777 99999988765443

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=99.93  E-value=6.8e-25  Score=172.01  Aligned_cols=148  Identities=28%  Similarity=0.335  Sum_probs=125.6

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      .+++++|+++||||++|||++++++|+++|++|++++|+.+++++..++++..  +.++..+.+|++|.  .++.++.+.
T Consensus         6 ~~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   83 (255)
T 1fmc_A            6 NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADFAI   83 (255)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999998888888887664  45678889999975  255566777


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +.+++  +|++|||||.....  ++ +.+.+++++.+++|+.|++.++++++|.|.+++.++ ||++||..+..+.|.
T Consensus        84 ~~~~~--~d~vi~~Ag~~~~~--~~-~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~  155 (255)
T 1fmc_A           84 SKLGK--VDILVNNAGGGGPK--PF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGV-ILTITSMAAENKNIN  155 (255)
T ss_dssp             HHHSS--CCEEEECCCCCCCC--CT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTCCCTT
T ss_pred             HhcCC--CCEEEECCCCCCCC--CC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcE-EEEEcchhhcCCCCC
Confidence            77775  55999999987643  35 678999999999999999999999999998877677 999999998877654

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=99.93  E-value=3.4e-25  Score=175.33  Aligned_cols=137  Identities=18%  Similarity=0.284  Sum_probs=117.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.++             +.++..+.+|++|.  +++.++.+.+.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-------------~~~~~~~~~Dl~~~~~v~~~~~~~~~~   71 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG-------------EAKYDHIECDVTNPDQVKASIDHIFKE   71 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC-------------SCSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc-------------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            3679999999999999999999999999999999998764             23467788999975  35666777788


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.++ ||++||.++..+.|..
T Consensus        72 ~g~--iD~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  143 (264)
T 2dtx_A           72 YGS--ISVLVNNAGIESY--GKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPS-IVNISSVQASIITKNA  143 (264)
T ss_dssp             HSC--CCEEEECCCCCCC--BCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCE-EEEECCGGGTSCCTTB
T ss_pred             cCC--CCEEEECCCCCCC--CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcE-EEEECCchhccCCCCc
Confidence            886  4599999998754  4488899999999999999999999999999998877777 9999999998877643

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=99.93  E-value=3.3e-25  Score=178.13  Aligned_cols=148  Identities=14%  Similarity=0.105  Sum_probs=121.7

Q ss_pred             cccCCcEEEEECCCC--hHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           49 LRKYGSWALVTGPTD--GIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        49 ~~~~~k~vlItGas~--giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      .+++||+++||||++  |||+++|++|+++|++|++++|+.+..+.+.+..... +  .+..+.+|++|.  +++.++++
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-~--~~~~~~~Dv~d~~~v~~~~~~~  102 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL-G--VKLTVPCDVSDAESVDNMFKVL  102 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH-T--CCEEEECCTTCHHHHHHHHHHH
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-C--CeEEEEcCCCCHHHHHHHHHHH
Confidence            457899999999997  9999999999999999999999976655555444442 2  247889999985  36677888


Q ss_pred             HHHhcCCCccEEEEeccccCCc--ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          125 KEAIEGLDVGVLINNVGISYPY--ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      .+.+++  +|++|||||+....  ..++.+.+.++|++.+++|+.|++.++++++|.|++  .|+ ||++||.++..+.|
T Consensus       103 ~~~~g~--iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~--~g~-IV~isS~~~~~~~~  177 (296)
T 3k31_A          103 AEEWGS--LDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTN--GGS-ILTLSYYGAEKVVP  177 (296)
T ss_dssp             HHHHSC--CSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT--CEE-EEEEECGGGTSCCT
T ss_pred             HHHcCC--CCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCE-EEEEEehhhccCCC
Confidence            888886  45999999987531  134789999999999999999999999999998854  455 99999999998877


Q ss_pred             CC
Q 028656          203 FH  204 (206)
Q Consensus       203 ~~  204 (206)
                      ..
T Consensus       178 ~~  179 (296)
T 3k31_A          178 HY  179 (296)
T ss_dssp             TT
T ss_pred             Cc
Confidence            54

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=99.93  E-value=4.6e-25  Score=174.66  Aligned_cols=147  Identities=21%  Similarity=0.261  Sum_probs=123.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEE-EcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +.+|+++||||++|||+++|++|+++|++|++. .|+.++.++..+++.+.  +.++.++.+|++|.  .++.++++.+.
T Consensus        24 l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~  101 (267)
T 4iiu_A           24 AMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVAN--GGNGRLLSFDVANREQCREVLEHEIAQ  101 (267)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999664 57778888888888774  45678899999985  35666777777


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhH-hCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGML-KRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~-~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+...  .++.+.+.+++++.+++|+.|++.+++.++|.|+ +++.++ ||++||.++..+.|..
T Consensus       102 ~g~--id~li~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  174 (267)
T 4iiu_A          102 HGA--WYGVVSNAGIARD--AAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGR-IITLSSVSGVMGNRGQ  174 (267)
T ss_dssp             HCC--CSEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEE-EEEECCHHHHHCCTTC
T ss_pred             hCC--ccEEEECCCCCCC--CccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcE-EEEEcchHhccCCCCC
Confidence            876  4599999999865  4488999999999999999999999999999887 444555 9999999998887754

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=99.93  E-value=4.4e-25  Score=172.84  Aligned_cols=146  Identities=24%  Similarity=0.317  Sum_probs=123.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++..   ..++..+.+|+++.  +++.++.+.+.
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc---cCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            35699999999999999999999999999999999999888777666532   24678899999975  35666777777


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC-CceEEEeccccccccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK-GLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~~iv~isS~~~~~~~~~  203 (206)
                      +++  +|++|||||+...  .++.+.+.++|++++++|+.|++.+++.++|.|++++. ++ ||++||..+..+.|.
T Consensus        80 ~~~--id~li~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~-iv~isS~~~~~~~~~  151 (251)
T 1zk4_A           80 FGP--VSTLVNNAGIAVN--KSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGAS-IINMSSIEGFVGDPS  151 (251)
T ss_dssp             HSS--CCEEEECCCCCCC--CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEE-EEEECCGGGTSCCTT
T ss_pred             hCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCE-EEEeCCchhccCCCC
Confidence            775  5599999998754  34788899999999999999999999999999987766 55 999999998887664

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=99.93  E-value=3.6e-25  Score=174.80  Aligned_cols=143  Identities=20%  Similarity=0.301  Sum_probs=115.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh-HHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK-LKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      +.+.+|+++||||++|||+++|++|+++|++|++++|+.+. .+...+.+..  .+.++.++.+|++|.  +++.++++.
T Consensus         3 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~   80 (264)
T 3i4f_A            3 LGRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKD--VEERLQFVQADVTKKEDLHKIVEEAM   80 (264)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGG--GGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHh--cCCceEEEEecCCCHHHHHHHHHHHH
Confidence            34568999999999999999999999999999999877654 4444444433  246789999999985  356677777


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccc
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE  196 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~  196 (206)
                      +.+++  +|++|||||+......++.+.+.++|++++++|+.|++.++++++|.|++++.++ ||++||..
T Consensus        81 ~~~g~--id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~-iv~iss~~  148 (264)
T 3i4f_A           81 SHFGK--IDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGR-IINYGFQG  148 (264)
T ss_dssp             HHHSC--CCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCTT
T ss_pred             HHhCC--CCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCe-EEEEeech
Confidence            88886  5599999995433335688999999999999999999999999999999888777 99999973

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=99.93  E-value=4.2e-25  Score=175.30  Aligned_cols=144  Identities=19%  Similarity=0.284  Sum_probs=120.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.++++++.+++.      .+..+.+|++|.  +++.++++.+.
T Consensus         6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~------~~~~~~~Dv~d~~~v~~~~~~~~~~   79 (270)
T 1yde_A            6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP------GAVFILCDVTQEDDVKTLVSETIRR   79 (270)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT------TEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc------CCeEEEcCCCCHHHHHHHHHHHHHH
Confidence            3679999999999999999999999999999999999888776655431      267889999975  35666777778


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+... ..++.+.+.++|++.+++|+.|++.++++++|.|+++ .++ ||++||..+..+.|..
T Consensus        80 ~g~--iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~g~-iv~isS~~~~~~~~~~  151 (270)
T 1yde_A           80 FGR--LDCVVNNAGHHPP-PQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS-QGN-VINISSLVGAIGQAQA  151 (270)
T ss_dssp             HSC--CCEEEECCCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCE-EEEECCHHHHHCCTTC
T ss_pred             cCC--CCEEEECCCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC-CCE-EEEEcCccccCCCCCC
Confidence            886  4599999998653 2357889999999999999999999999999998765 466 9999999888776643

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=99.93  E-value=2.4e-25  Score=173.97  Aligned_cols=147  Identities=24%  Similarity=0.358  Sum_probs=105.8

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEE-EcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++++|+++||||++|||++++++|+++|++|+++ +|+.+++++..++++..  +.++..+.+|++|.  +++.++++.+
T Consensus         2 ~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (247)
T 2hq1_A            2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAA--GINVVVAKGDVKNPEDVENMVKTAMD   79 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHT--TCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999 67777787777777653  45688899999975  3556677777


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .+++  +|++|||||+...  .++.+.+.+++++.+++|+.|++.++++++|.|++++.++ ||++||..+..+.|.
T Consensus        80 ~~~~--~d~vi~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~  151 (247)
T 2hq1_A           80 AFGR--IDILVNNAGITRD--TLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGK-IINITSIAGIIGNAG  151 (247)
T ss_dssp             HHSC--CCEEEECC-----------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEE-EEEECC---------
T ss_pred             hcCC--CCEEEECCCCCCC--CccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcE-EEEEcChhhccCCCC
Confidence            7775  5599999998754  3477888899999999999999999999999998877777 999999988877664

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=99.93  E-value=6.3e-25  Score=174.30  Aligned_cols=145  Identities=18%  Similarity=0.254  Sum_probs=123.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEE-EcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      ++|+++||||++|||+++|++|+++|++|+++ .|+.+..+++.+++.+.  +.++..+.+|++|.  +++.++++.+.+
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  102 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITES--GGEAVAIPGDVGNAADIAAMFSAVDRQF  102 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            57999999999999999999999999999887 78888888888888763  56788999999985  366677888888


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC---CCCceEEEecccccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR---KKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~---~~g~~iv~isS~~~~~~~~  202 (206)
                      ++  +|++|||||+... ..++.+.+.+++++++++|+.|++.++++++|.|.+.   +.|+ ||++||.++..+.+
T Consensus       103 g~--id~li~nAg~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~  175 (272)
T 4e3z_A          103 GR--LDGLVNNAGIVDY-PQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGA-IVNVSSMAAILGSA  175 (272)
T ss_dssp             SC--CCEEEECCCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEE-EEEECCTHHHHCCT
T ss_pred             CC--CCEEEECCCCCCC-CCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCE-EEEEcchHhccCCC
Confidence            86  4599999998754 2458889999999999999999999999999998763   3445 99999999988766

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=99.93  E-value=3.5e-25  Score=174.64  Aligned_cols=150  Identities=21%  Similarity=0.262  Sum_probs=122.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhc-----CCceEEEEEEecCCC--chHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKY-----AKTQIKSVVVDFSGD--LDEGVE  122 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~--~~~~~~  122 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+++++..++++..+     +..++..+.+|++|.  .++.++
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   83 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLE   83 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHH
Confidence            3568999999999999999999999999999999999988887776664432     114678889999975  356667


Q ss_pred             HHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccc
Q 028656          123 RIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSV  201 (206)
Q Consensus       123 ~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~  201 (206)
                      .+.+.++++ +|++|||||+...  .++.+.+.+++++.+++|+.|++.+++++.|.|.+++ .++ ||++||..+..+.
T Consensus        84 ~~~~~~g~i-~d~vi~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~-iv~isS~~~~~~~  159 (264)
T 2pd6_A           84 QVQACFSRP-PSVVVSCAGITQD--EFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGS-IINISSIVGKVGN  159 (264)
T ss_dssp             HHHHHHSSC-CSEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEE-EEEECCTHHHHCC
T ss_pred             HHHHHhCCC-CeEEEECCCcCCC--cchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCce-EEEECChhhccCC
Confidence            777778864 2699999998765  3478889999999999999999999999999998776 566 9999999888776


Q ss_pred             cC
Q 028656          202 RF  203 (206)
Q Consensus       202 ~~  203 (206)
                      |.
T Consensus       160 ~~  161 (264)
T 2pd6_A          160 VG  161 (264)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=99.93  E-value=8.7e-25  Score=171.02  Aligned_cols=148  Identities=22%  Similarity=0.330  Sum_probs=122.7

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~  130 (206)
                      +|+++||||++|||++++++|+++|++|++++|+.+++++..+++... .+.++..+.+|++|.  .++.++++.+.+++
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHA-YADKVLRVRADVADEGDVNAAIAATMEQFGA   80 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTT-TGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-cCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            689999999999999999999999999999999998888777766221 235688899999985  35666777777775


Q ss_pred             CCccEEEEeccccCCcc-cccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          131 LDVGVLINNVGISYPYA-RFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                        +|++|||||+....+ ..+.+.+.+++++++++|+.|++.+++.++|.|++++.++ ||++||..+..+.|..
T Consensus        81 --id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-iv~isS~~~~~~~~~~  152 (250)
T 2cfc_A           81 --IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGV-IVNIASVASLVAFPGR  152 (250)
T ss_dssp             --CCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCTTC
T ss_pred             --CCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCE-EEEECChhhccCCCCc
Confidence              559999999865321 1267889999999999999999999999999998877777 9999999988776643

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=99.93  E-value=1.2e-24  Score=172.12  Aligned_cols=150  Identities=14%  Similarity=0.101  Sum_probs=122.5

Q ss_pred             cccCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHH
Q 028656           49 LRKYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERI  124 (206)
Q Consensus        49 ~~~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~  124 (206)
                      ++++||+++||||+  +|||+++|++|+++|++|++++|+....+...+.. +..+..++..+.+|++|..  ++.++++
T Consensus         3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~v~~~~~~~   81 (266)
T 3oig_A            3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELA-GTLDRNDSIILPCDVTNDAEIETCFASI   81 (266)
T ss_dssp             SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH-HTSSSCCCEEEECCCSSSHHHHHHHHHH
T ss_pred             cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHH-HhcCCCCceEEeCCCCCHHHHHHHHHHH
Confidence            45779999999999  67999999999999999999999975555444433 3334447889999999863  5667788


Q ss_pred             HHHhcCCCccEEEEeccccCCc--ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          125 KEAIEGLDVGVLINNVGISYPY--ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      .+.++++  |++|||||+..+.  ..++.+.+.+++++++++|+.|++.++++++|.|++  .|+ ||++||.++..+.|
T Consensus        82 ~~~~g~i--d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~g~-iv~isS~~~~~~~~  156 (266)
T 3oig_A           82 KEQVGVI--HGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTE--GGS-IVTLTYLGGELVMP  156 (266)
T ss_dssp             HHHHSCC--CEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT--CEE-EEEEECGGGTSCCT
T ss_pred             HHHhCCe--eEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCC--Cce-EEEEecccccccCC
Confidence            8888864  5999999987531  245788999999999999999999999999998853  456 99999999998887


Q ss_pred             CC
Q 028656          203 FH  204 (206)
Q Consensus       203 ~~  204 (206)
                      ..
T Consensus       157 ~~  158 (266)
T 3oig_A          157 NY  158 (266)
T ss_dssp             TT
T ss_pred             Cc
Confidence            54

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=99.93  E-value=6.3e-25  Score=171.24  Aligned_cols=144  Identities=26%  Similarity=0.363  Sum_probs=122.5

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEE-EcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhc
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIE  129 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~  129 (206)
                      ||+++||||++|||++++++|+++|++|+++ +|+.++.+++.++++..  +.++..+.+|+++.  .++.++.+.+.++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAWG   78 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            6899999999999999999999999999994 89988888887777654  45788899999975  2556667777777


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +  +|++|||||+...  .++.+.+.+++++++++|+.|++.+++++.|.|++++.++ ||++||..+..+.|.
T Consensus        79 ~--id~li~~Ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~  147 (244)
T 1edo_A           79 T--IDVVVNNAGITRD--TLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGR-IINIASVVGLIGNIG  147 (244)
T ss_dssp             C--CSEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCTHHHHCCTT
T ss_pred             C--CCEEEECCCCCCC--cCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCE-EEEECChhhcCCCCC
Confidence            5  5599999998765  3478889999999999999999999999999998877777 999999988877664

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=99.93  E-value=1.5e-25  Score=177.51  Aligned_cols=138  Identities=21%  Similarity=0.230  Sum_probs=116.3

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      .+++||+++||||++|||+++|++|+++|++|++++|+.+..++             .....+|+++.  +++.++.+.+
T Consensus        24 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~-------------~~~~~~Dv~~~~~~~~~~~~~~~   90 (266)
T 3uxy_A           24 QGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAA-------------DLHLPGDLREAAYADGLPGAVAA   90 (266)
T ss_dssp             --CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCC-------------SEECCCCTTSHHHHHHHHHHHHH
T ss_pred             hCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHh-------------hhccCcCCCCHHHHHHHHHHHHH
Confidence            34779999999999999999999999999999999998765321             13347888874  3566677888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .++++  |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+..+.|..
T Consensus        91 ~~g~i--D~lvnnAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~-iv~isS~~~~~~~~~~  163 (266)
T 3uxy_A           91 GLGRL--DIVVNNAGVISR--GRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGA-IVNVASCWGLRPGPGH  163 (266)
T ss_dssp             HHSCC--CEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCSBTTBCCTTB
T ss_pred             hcCCC--CEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcE-EEEECCHHhCCCCCCC
Confidence            88864  599999999865  4588999999999999999999999999999999887777 9999999999888754

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=99.93  E-value=4.3e-25  Score=171.14  Aligned_cols=139  Identities=19%  Similarity=0.306  Sum_probs=117.5

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      |+++||||++|||+++|++|+++|++|++++|+.++++++.+++     +.++..+.+|+++.  +.++.+.+..... +
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~--~~v~~~~~~~~~~-~   73 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL-----SNNVGYRARDLASH--QEVEQLFEQLDSI-P   73 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC-----SSCCCEEECCTTCH--HHHHHHHHSCSSC-C
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hhccCeEeecCCCH--HHHHHHHHHHhhc-C
Confidence            57999999999999999999999999999999998888776655     44677889999986  5566666665542 4


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++ ++ ||++||..+..+.|..
T Consensus        74 d~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~-iv~isS~~~~~~~~~~  140 (230)
T 3guy_A           74 STVVHSAGSGYF--GLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQP-VN-VVMIMSTAAQQPKAQE  140 (230)
T ss_dssp             SEEEECCCCCCC--SCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CE-EEEECCGGGTSCCTTC
T ss_pred             CEEEEeCCcCCC--CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-Ce-EEEEeecccCCCCCCC
Confidence            799999998765  4588999999999999999999999999999987654 45 9999999999887754

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=99.93  E-value=1.1e-24  Score=171.44  Aligned_cols=140  Identities=18%  Similarity=0.147  Sum_probs=116.9

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      |+++||||++|||++++++|+++|++|++++|+.+++++..+ ++..+..  +..+   ..+++++.++++.+.++++  
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~~~~--~~~~---d~~~v~~~~~~~~~~~g~i--   73 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAETYPQ--LKPM---SEQEPAELIEAVTSAYGQV--   73 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHHCTT--SEEC---CCCSHHHHHHHHHHHHSCC--
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhcCCc--EEEE---CHHHHHHHHHHHHHHhCCC--
Confidence            689999999999999999999999999999999988877665 6554322  2333   2345577888888888864  


Q ss_pred             cEEEEecccc-CCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          134 GVLINNVGIS-YPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       134 d~lvnnAg~~-~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      |++|||||+. ..  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+..+.|..
T Consensus        74 D~lv~nAg~~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  142 (254)
T 1zmt_A           74 DVLVSNDIFAPEF--QPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGH-IIFITSATPFGPWKEL  142 (254)
T ss_dssp             CEEEEECCCCCCC--CCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE-EEEECCSTTTSCCTTC
T ss_pred             CEEEECCCcCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcE-EEEECCcccccCCCCc
Confidence            5999999987 43  4578899999999999999999999999999998887777 9999999998877643

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=99.93  E-value=2.3e-24  Score=173.27  Aligned_cols=151  Identities=21%  Similarity=0.295  Sum_probs=125.9

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      ..++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++.+.+ +.++..+.+|+++.  +++.++.+.
T Consensus        21 ~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~   99 (302)
T 1w6u_A           21 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELI   99 (302)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHHH
Confidence            345789999999999999999999999999999999999998888888876643 45688899999975  255566677


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +.+++  +|++|||||+...  .++.+.+.+++++.+++|+.|++.++++++|.|++++.+.+||++||..+..+.|.
T Consensus       100 ~~~g~--id~li~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~  173 (302)
T 1w6u_A          100 KVAGH--PNIVINNAAGNFI--SPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGF  173 (302)
T ss_dssp             HHTCS--CSEEEECCCCCCC--SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTT
T ss_pred             HHcCC--CCEEEECCCCCCC--CccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCCCC
Confidence            77775  5599999998654  34778899999999999999999999999999984443334999999988877664

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=99.93  E-value=8e-25  Score=172.52  Aligned_cols=150  Identities=20%  Similarity=0.280  Sum_probs=123.4

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      ..+++++|+++||||++|||++++++|+++|++|++++|+.++.++..+++.+.. +.++..+.+|++|.  +++.++.+
T Consensus         8 ~~~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~   86 (265)
T 1h5q_A            8 FTISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQI   86 (265)
T ss_dssp             EEECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHHHHHHHHHHH
Confidence            4556789999999999999999999999999999999998777666666665432 45688899999975  24555666


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC-CceEEEecccccccccc
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK-GLSMLNIGKAELMCSVR  202 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~~iv~isS~~~~~~~~  202 (206)
                      .+.+++  +|++|||||+...  .++.+.+.+++++.+++|+.|++.++++++|.|++++. ++ ||++||..+..+.+
T Consensus        87 ~~~~~~--id~li~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~  160 (265)
T 1h5q_A           87 DADLGP--ISGLIANAGVSVV--KPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGS-IVVTSSMSSQIINQ  160 (265)
T ss_dssp             HHHSCS--EEEEEECCCCCCC--SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEE-EEEECCGGGTSCCE
T ss_pred             HHhcCC--CCEEEECCCcCCC--CchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCce-EEEeCCchhhcccc
Confidence            666664  6699999998765  34788899999999999999999999999999987764 55 99999988876543

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=99.93  E-value=1e-25  Score=177.25  Aligned_cols=140  Identities=22%  Similarity=0.312  Sum_probs=111.6

Q ss_pred             CCcccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHH
Q 028656           45 PAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVE  122 (206)
Q Consensus        45 ~~~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~  122 (206)
                      +.+..++.+|+++||||++|||++++++|+++|++|++++|+.+++++             +..+.+|++|.  +++.++
T Consensus        13 ~~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~-------------~~~~~~Dl~d~~~v~~~~~   79 (253)
T 2nm0_A           13 GLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEG-------------FLAVKCDITDTEQVEQAYK   79 (253)
T ss_dssp             -------CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT-------------SEEEECCTTSHHHHHHHHH
T ss_pred             CCCccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhcc-------------ceEEEecCCCHHHHHHHHH
Confidence            344556789999999999999999999999999999999998765321             56788999975  356667


Q ss_pred             HHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          123 RIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       123 ~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      .+.+.+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+..+.|
T Consensus        80 ~~~~~~g~--iD~lv~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~-iv~isS~~~~~~~~  154 (253)
T 2nm0_A           80 EIEETHGP--VEVLIANAGVTKD--QLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGR-VVLISSVVGLLGSA  154 (253)
T ss_dssp             HHHHHTCS--CSEEEEECSCCTT--TC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEE-EEEECCCCCCCCHH
T ss_pred             HHHHHcCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCE-EEEECchhhCCCCC
Confidence            77777775  5599999998754  3478889999999999999999999999999998877777 99999999887655

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=99.93  E-value=2.7e-25  Score=181.07  Aligned_cols=148  Identities=24%  Similarity=0.328  Sum_probs=118.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhc----CCceEEEEEEecCCCchHHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKY----AKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      ++|+++||||++|||+++|++|+++|++|++++|+.+++++..+.++...    .+.++..+.+|+++.  +.++.+.+.
T Consensus         1 ~~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~--~~v~~~~~~   78 (327)
T 1jtv_A            1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDS--KSVAAARER   78 (327)
T ss_dssp             CCEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCH--HHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCH--HHHHHHHHH
Confidence            37899999999999999999999999999998887655444443333221    235688899999986  445555444


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ...-++|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|+|++++.|+ ||++||.++..+.|..
T Consensus        79 ~~~g~iD~lVnnAG~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~-IV~isS~~~~~~~~~~  152 (327)
T 1jtv_A           79 VTEGRVDVLVCNAGLGLL--GPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGR-VLVTGSVGGLMGLPFN  152 (327)
T ss_dssp             CTTSCCSEEEECCCCCCC--SCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEEEEGGGTSCCTTC
T ss_pred             HhcCCCCEEEECCCcCCC--CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCE-EEEECCcccccCCCCC
Confidence            322257799999998754  3488899999999999999999999999999998877777 9999999998887643

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=99.93  E-value=1.1e-24  Score=171.78  Aligned_cols=147  Identities=18%  Similarity=0.197  Sum_probs=122.1

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      .+++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++     +.++.++.+|+++.  +++.++++.
T Consensus         7 ~~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~   81 (265)
T 2o23_A            7 CRSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-----GNNCVFAPADVTSEKDVQTALALAK   81 (265)
T ss_dssp             -CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            34577999999999999999999999999999999999998888776665     34678899999975  356667777


Q ss_pred             HHhcCCCccEEEEeccccCCcccccc------cCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC------CCCceEEEec
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFH------EVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR------KKGLSMLNIG  193 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~------~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~------~~g~~iv~is  193 (206)
                      +.+++  +|++|||||+....+  +.      +.+.+++++.+++|+.|++.+++++.|.|+++      +.++ ||++|
T Consensus        82 ~~~g~--id~li~~Ag~~~~~~--~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~-iv~is  156 (265)
T 2o23_A           82 GKFGR--VDVAVNCAGIAVASK--TYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGV-IINTA  156 (265)
T ss_dssp             HHHSC--CCEEEECCCCCCCCC--SEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEE-EEEEC
T ss_pred             HHCCC--CCEEEECCccCCCCc--cccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcE-EEEeC
Confidence            77875  559999999875432  33      47889999999999999999999999999876      4566 99999


Q ss_pred             cccccccccCC
Q 028656          194 KAELMCSVRFH  204 (206)
Q Consensus       194 S~~~~~~~~~~  204 (206)
                      |..+..+.|..
T Consensus       157 S~~~~~~~~~~  167 (265)
T 2o23_A          157 SVAAFEGQVGQ  167 (265)
T ss_dssp             CTHHHHCCTTC
T ss_pred             ChhhcCCCCCC
Confidence            99988776643

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=99.93  E-value=8.9e-25  Score=169.56  Aligned_cols=141  Identities=21%  Similarity=0.351  Sum_probs=119.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~  129 (206)
                      .+|+++||||++|||++++++|+++|++|++++|+.++++++.+++.      ++..+.+|++|.  .++.++.+.+.++
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELE------GALPLPGDVREEGDWARAVAAMEEAFG   77 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh------hceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            47899999999999999999999999999999999887776655431      467788999975  2555677777777


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +  +|++|||||+...  .++.+.+.+++++.+++|+.|++.+++.++|.|++++.++ ||++||..+..+.|.
T Consensus        78 ~--id~li~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~-iv~isS~~~~~~~~~  146 (234)
T 2ehd_A           78 E--LSALVNNAGVGVM--KPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGT-IVNVGSLAGKNPFKG  146 (234)
T ss_dssp             C--CCEEEECCCCCCC--SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEE-EEEECCTTTTSCCTT
T ss_pred             C--CCEEEECCCcCCC--CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcE-EEEECCchhcCCCCC
Confidence            5  5599999998754  3478899999999999999999999999999998877777 999999998877664

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=99.93  E-value=9e-25  Score=171.45  Aligned_cols=139  Identities=17%  Similarity=0.221  Sum_probs=116.7

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++++|+++||||++|||++++++|+++|++|++++|+.+.        ..  .+  +..+.+|++|.  +++.++++.+
T Consensus         3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~--------~~--~~--~~~~~~D~~d~~~~~~~~~~~~~   70 (250)
T 2fwm_X            3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ--------EQ--YP--FATEVMDVADAAQVAQVCQRLLA   70 (250)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS--------SC--CS--SEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh--------hc--CC--ceEEEcCCCCHHHHHHHHHHHHH
Confidence            34679999999999999999999999999999999998752        11  12  56788999975  3566677777


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+...  .++.+.+.++|++.+++|+.|++.++++++|.|++++.++ ||++||..+..+.|..
T Consensus        71 ~~g~--id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~-iv~isS~~~~~~~~~~  143 (250)
T 2fwm_X           71 ETER--LDALVNAAGILRM--GATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGA-IVTVASDAAHTPRIGM  143 (250)
T ss_dssp             HCSC--CCEEEECCCCCCC--CCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE-EEEECCGGGTSCCTTC
T ss_pred             HcCC--CCEEEECCCcCCC--CCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCE-EEEECchhhCCCCCCC
Confidence            7775  5599999998754  3478899999999999999999999999999998887777 9999999998877643

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=99.93  E-value=5.6e-25  Score=172.67  Aligned_cols=147  Identities=22%  Similarity=0.337  Sum_probs=122.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEE-EcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++|+++||||++|||+++|++|+++|++|+++ +|+.++.++..+++...  +.++..+.+|+++.  +++.++.+.+.
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSN--GGSAFSIGANLESLHGVEALYSSLDNE   82 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhc--CCceEEEecCcCCHHHHHHHHHHHHHH
Confidence            569999999999999999999999999999886 67778888888888764  56788999999975  34555666665


Q ss_pred             hcC----CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          128 IEG----LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~----~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +++    .++|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|.  +.++ ||++||.++..+.|.
T Consensus        83 ~~~~~~~~~id~lv~nAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~--~~~~-iv~isS~~~~~~~~~  157 (255)
T 3icc_A           83 LQNRTGSTKFDILINNAGIGPG--AFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLR--DNSR-IINISSAATRISLPD  157 (255)
T ss_dssp             HHHHHSSSCEEEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEE--EEEE-EEEECCGGGTSCCTT
T ss_pred             hcccccCCcccEEEECCCCCCC--CChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhC--CCCE-EEEeCChhhccCCCC
Confidence            543    247899999998754  4488899999999999999999999999999883  3456 999999999988875


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      .
T Consensus       158 ~  158 (255)
T 3icc_A          158 F  158 (255)
T ss_dssp             B
T ss_pred             c
Confidence            4

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=99.92  E-value=2.5e-25  Score=174.39  Aligned_cols=139  Identities=26%  Similarity=0.356  Sum_probs=109.6

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      ..++++|+++||||++|||++++++|+++|++|++++|+.++++++             ..+.+|++|.  +++.++++.
T Consensus        10 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~-------------~~~~~D~~~~~~~~~~~~~~~   76 (247)
T 1uzm_A           10 KPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL-------------FGVEVDVTDSDAVDRAFTAVE   76 (247)
T ss_dssp             CCCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTS-------------EEEECCTTCHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHh-------------cCeeccCCCHHHHHHHHHHHH
Confidence            3457799999999999999999999999999999999987654321             1378899975  356667777


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +.+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.++ ||++||..+..+.|..
T Consensus        77 ~~~g~--id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  150 (247)
T 1uzm_A           77 EHQGP--VEVLVSNAGLSAD--AFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGR-MIFIGSVSGLWGIGNQ  150 (247)
T ss_dssp             HHHSS--CSEEEEECSCCC-------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEE-EEEECCCCC-----CC
T ss_pred             HHcCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCE-EEEECCHhhccCCCCC
Confidence            77876  4599999998754  3478899999999999999999999999999998877777 9999999988776643

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=99.92  E-value=2.1e-24  Score=173.61  Aligned_cols=150  Identities=22%  Similarity=0.338  Sum_probs=124.5

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhc---CCceEEEEEEecCCC--chHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKY---AKTQIKSVVVDFSGD--LDEGVE  122 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~--~~~~~~  122 (206)
                      ..++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++....   .+.++..+.+|+++.  +++.++
T Consensus        13 ~~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~   92 (303)
T 1yxm_A           13 PGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK   92 (303)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHH
Confidence            345779999999999999999999999999999999999998888888876521   245788999999975  356667


Q ss_pred             HHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          123 RIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       123 ~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      .+.+.+++  +|++|||||+...  .++.+.+.+++++++++|+.|++.++++++|.+.+++.++ ||++||.+ ..+.|
T Consensus        93 ~~~~~~g~--id~li~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~-iv~isS~~-~~~~~  166 (303)
T 1yxm_A           93 STLDTFGK--INFLVNNGGGQFL--SPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGS-IVNIIVPT-KAGFP  166 (303)
T ss_dssp             HHHHHHSC--CCEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEE-EEEECCCC-TTCCT
T ss_pred             HHHHHcCC--CCEEEECCCCCCC--CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCe-EEEEEeec-ccCCC
Confidence            77777875  5599999997654  3477889999999999999999999999999766665566 99999987 55555


Q ss_pred             C
Q 028656          203 F  203 (206)
Q Consensus       203 ~  203 (206)
                      .
T Consensus       167 ~  167 (303)
T 1yxm_A          167 L  167 (303)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=99.92  E-value=1.5e-24  Score=172.55  Aligned_cols=146  Identities=16%  Similarity=0.176  Sum_probs=122.6

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++++|+++||||++|||++++++|+++|++|++++|+.++.++..+++...  +.++..+.+|+++.  .++.++.+.+
T Consensus        30 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~  107 (279)
T 3ctm_A           30 FSLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTY--GVHSKAYKCNISDPKSVEETISQQEK  107 (279)
T ss_dssp             GCCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHH--CSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeecCCHHHHHHHHHHHHH
Confidence            3478999999999999999999999999999999999988887777766553  45678899999975  3556677777


Q ss_pred             HhcCCCccEEEEeccccCCcccccc-cCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFH-EVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~-~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      .+++  +|++|||||+.... .++. +.+.+++++.+++|+.|++.+++.++|.|++++.++ ||++||..+..+
T Consensus       108 ~~g~--id~li~~Ag~~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~-iv~isS~~~~~~  178 (279)
T 3ctm_A          108 DFGT--IDVFVANAGVTWTQ-GPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGS-LIITSSISGKIV  178 (279)
T ss_dssp             HHSC--CSEEEECGGGSTTC---CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE-EEEECCCTTSCC
T ss_pred             HhCC--CCEEEECCcccccC-CcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCe-EEEECchHhccC
Confidence            7775  55999999987541 2355 788899999999999999999999999998877777 999999998776

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=99.92  E-value=1.5e-24  Score=174.03  Aligned_cols=147  Identities=15%  Similarity=0.149  Sum_probs=119.0

Q ss_pred             ccCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           50 RKYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        50 ~~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      +++||+++||||+  +|||+++|++|+++|++|++++|+.+..+.+ +++.+..  .++..+.+|++|.  +++.++++.
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~-~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~  104 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRV-EPLAEEL--GAFVAGHCDVADAASIDAVFETLE  104 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHH-HHHHHHH--TCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HHHHHhc--CCceEEECCCCCHHHHHHHHHHHH
Confidence            4779999999999  5599999999999999999999996544333 3333332  2477899999985  356677788


Q ss_pred             HHhcCCCccEEEEeccccCCc--ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          126 EAIEGLDVGVLINNVGISYPY--ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +.+++  +|++|||||+....  ..++.+.+.++|++.+++|+.|++.++++++|.|++  .|+ ||++||..+..+.|.
T Consensus       105 ~~~g~--iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~--~g~-Iv~isS~~~~~~~~~  179 (293)
T 3grk_A          105 KKWGK--LDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMAD--GGS-ILTLTYYGAEKVMPN  179 (293)
T ss_dssp             HHTSC--CSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT--CEE-EEEEECGGGTSBCTT
T ss_pred             HhcCC--CCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCE-EEEEeehhhccCCCc
Confidence            88886  55999999987521  245789999999999999999999999999998864  456 999999999988875


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      .
T Consensus       180 ~  180 (293)
T 3grk_A          180 Y  180 (293)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=99.92  E-value=9.2e-25  Score=177.31  Aligned_cols=146  Identities=23%  Similarity=0.325  Sum_probs=120.9

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEE---------cChhhHHHHHHHHHHhcCCceEEEEEEecCCC--
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG---------RNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--  116 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~---------r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--  116 (206)
                      +++++||+++||||++|||+++|++|+++|++|++.+         |+.+++++..+++...+  ..   ..+|+++.  
T Consensus         4 ~~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~--~~---~~~D~~~~~~   78 (319)
T 1gz6_A            4 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG--GK---AVANYDSVEA   78 (319)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT--CE---EEEECCCGGG
T ss_pred             CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhC--Ce---EEEeCCCHHH
Confidence            3567899999999999999999999999999999974         46677888888876642  22   24788764  


Q ss_pred             chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccc
Q 028656          117 LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE  196 (206)
Q Consensus       117 ~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~  196 (206)
                      .++.++.+.+.+++  +|++|||||+...  .++.+.+.++|++.+++|+.|++.++++++|.|++++.++ ||++||.+
T Consensus        79 ~~~~~~~~~~~~g~--iD~lVnnAG~~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~gr-IV~vsS~~  153 (319)
T 1gz6_A           79 GEKLVKTALDTFGR--IDVVVNNAGILRD--RSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGR-IIMTASAS  153 (319)
T ss_dssp             HHHHHHHHHHHTSC--CCEEEECCCCCCC--CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEE-EEEECCHH
T ss_pred             HHHHHHHHHHHcCC--CCEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCE-EEEECChh
Confidence            35667777888886  5599999998765  3478899999999999999999999999999998887777 99999998


Q ss_pred             ccccccC
Q 028656          197 LMCSVRF  203 (206)
Q Consensus       197 ~~~~~~~  203 (206)
                      +..+.|.
T Consensus       154 ~~~~~~~  160 (319)
T 1gz6_A          154 GIYGNFG  160 (319)
T ss_dssp             HHHCCTT
T ss_pred             hccCCCC
Confidence            8777664

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=99.92  E-value=3e-24  Score=171.08  Aligned_cols=148  Identities=18%  Similarity=0.189  Sum_probs=118.7

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      .+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++     +.++.++.+|+++.  +.++.+.+..
T Consensus        26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~--~~v~~~~~~~   98 (281)
T 3ppi_A           26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL-----GNRAEFVSTNVTSE--DSVLAAIEAA   98 (281)
T ss_dssp             GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCH--HHHHHHHHHH
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCceEEEEcCCCCH--HHHHHHHHHH
Confidence            4578999999999999999999999999999999999999888877776     45688999999986  4444444433


Q ss_pred             cCC-CccEEEEe-ccccCCccc---ccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHh------CCCCceEEEeccccc
Q 028656          129 EGL-DVGVLINN-VGISYPYAR---FFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLK------RKKGLSMLNIGKAEL  197 (206)
Q Consensus       129 ~~~-~id~lvnn-Ag~~~~~~~---~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~------~~~g~~iv~isS~~~  197 (206)
                      ... ++|++||| ||+......   ...+.+.++|++.+++|+.|++.++++++|.|.+      ++.|+ ||++||..+
T Consensus        99 ~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~-iv~isS~~~  177 (281)
T 3ppi_A           99 NQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGA-LVLTASIAG  177 (281)
T ss_dssp             TTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEE-EEEECCGGG
T ss_pred             HHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeE-EEEEecccc
Confidence            222 47799999 555443210   1146889999999999999999999999999986      34555 999999999


Q ss_pred             cccccCC
Q 028656          198 MCSVRFH  204 (206)
Q Consensus       198 ~~~~~~~  204 (206)
                      ..+.|..
T Consensus       178 ~~~~~~~  184 (281)
T 3ppi_A          178 YEGQIGQ  184 (281)
T ss_dssp             TSCCTTC
T ss_pred             cCCCCCC
Confidence            9888754

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=99.92  E-value=2.3e-24  Score=172.23  Aligned_cols=147  Identities=18%  Similarity=0.193  Sum_probs=119.3

Q ss_pred             cCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           51 KYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++|+++||||+  +|||+++|++|+++|++|++++|+.+ .++..+++.+..++  +..+.+|+++.  +++.++.+.+
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~--~~~~~~Dl~~~~~v~~~~~~~~~   95 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFGS--DLVVKCDVSLDEDIKNLKKFLEE   95 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTTC--CCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcCC--eEEEEcCCCCHHHHHHHHHHHHH
Confidence            679999999999  99999999999999999999999985 44455555543322  56788999975  3566677777


Q ss_pred             HhcCCCccEEEEeccccCCc--ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPY--ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+....  ..++.+.+.++|++++++|+.|++.++++++|.|+++ .|+ ||++||..+..+.|.+
T Consensus        96 ~~g~--iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~g~-iv~isS~~~~~~~~~~  171 (285)
T 2p91_A           96 NWGS--LDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGR-NGA-IVTLSYYGAEKVVPHY  171 (285)
T ss_dssp             HTSC--CCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTS-CCE-EEEEECGGGTSBCTTT
T ss_pred             HcCC--CCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCE-EEEEccchhccCCCCc
Confidence            7775  55999999987531  1347789999999999999999999999999998754 466 9999999998887744

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=99.92  E-value=1.3e-24  Score=169.43  Aligned_cols=144  Identities=22%  Similarity=0.360  Sum_probs=121.1

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEE-EcChhhHHHHHHHHHHhcCCceEEE-EEEecCCC--chHHHHHHHHHh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYAKTQIKS-VVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +|+++||||++|||++++++|+++|++|+++ +|+.+++++..++++..  +.++.. +.+|+++.  .++.++++.+.+
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRR--GSPLVAVLGANLLEAEAATALVHQAAEVL   78 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHT--TCSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCceEEEEeccCCCHHHHHHHHHHHHHhc
Confidence            4789999999999999999999999999998 89988888887777664  334455 88999975  255667777777


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++  +|++|||||+...  .++.+.+.+++++.+++|+.|++.+++.++|.|++++.++ ||++||..+..+.|.
T Consensus        79 ~~--~d~li~~Ag~~~~--~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~  148 (245)
T 2ph3_A           79 GG--LDTLVNNAGITRD--TLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGR-IVNITSVVGILGNPG  148 (245)
T ss_dssp             TC--CCEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCTHHHHCCSS
T ss_pred             CC--CCEEEECCCCCCC--CCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCE-EEEEeChhhccCCCC
Confidence            75  5599999998754  3478899999999999999999999999999998877777 999999988777664

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=99.92  E-value=5.3e-24  Score=170.10  Aligned_cols=147  Identities=20%  Similarity=0.269  Sum_probs=123.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      .+++|+++||||++|||++++++|+++|++|++++|+.++++++.+++.+. +..++.++.+|++|.  +++.++.+.+.
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~v~~~~~~~~~~  103 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL-GAASAHYIAGTMEDMTFAEQFVAQAGKL  103 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-TCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh-CCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence            477999999999999999999999999999999999999998888887665 244788899999984  35566777777


Q ss_pred             hcCCCccEEEEe-ccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINN-VGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnn-Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++||| ||....   ++.+.+.+++++++++|+.|++.++++++|.|.++ .|+ ||++||.++..+.|+.
T Consensus       104 ~g~--iD~li~naag~~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~g~-iv~isS~~~~~~~~~~  174 (286)
T 1xu9_A          104 MGG--LDMLILNHITNTSL---NLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS-NGS-IVVVSSLAGKVAYPMV  174 (286)
T ss_dssp             HTS--CSEEEECCCCCCCC---CCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCE-EEEEEEGGGTSCCTTC
T ss_pred             cCC--CCEEEECCccCCCC---ccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHC-CCE-EEEECCcccccCCCCc
Confidence            775  5599999 576532   24567899999999999999999999999988654 466 9999999998887743

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=99.92  E-value=7.1e-25  Score=171.44  Aligned_cols=140  Identities=11%  Similarity=0.052  Sum_probs=114.8

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEE-E--cChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLV-G--RNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      +|+++||||++|||++++++|+++|++|+++ +  |+.++++++.+++    .+.++.     ..+++++.++.+.+.++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~----~~~~~~-----~~~~v~~~~~~~~~~~g   71 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN----PGTIAL-----AEQKPERLVDATLQHGE   71 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS----TTEEEC-----CCCCGGGHHHHHGGGSS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh----CCCccc-----CHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999999999999 6  9988887766655    122221     23455677788888877


Q ss_pred             CCCccEEEEeccccCCc-ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          130 GLDVGVLINNVGISYPY-ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +  +|++|||||+.... ..++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||..+..+.|..
T Consensus        72 ~--iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~-iv~isS~~~~~~~~~~  144 (244)
T 1zmo_A           72 A--IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGAS-VIFITSSVGKKPLAYN  144 (244)
T ss_dssp             C--EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEE-EEEECCGGGTSCCTTC
T ss_pred             C--CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcE-EEEECChhhCCCCCCc
Confidence            4  66999999987540 03478899999999999999999999999999998887777 9999999999887754

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=99.92  E-value=3.3e-24  Score=167.14  Aligned_cols=134  Identities=25%  Similarity=0.353  Sum_probs=114.4

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC-CchHHHHHHHHHhcCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG-DLDEGVERIKEAIEGL  131 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~  131 (206)
                      +|+++||||++|||++++++|+++|++|++++|+.++   ..+++     +  +..+.+|+++ +.++.++++.+.++++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~-----~--~~~~~~D~~~~~~~~~~~~~~~~~g~i   71 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE---AAQSL-----G--AVPLPTDLEKDDPKGLVKRALEALGGL   71 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHH-----T--CEEEECCTTTSCHHHHHHHHHHHHTSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHhh-----C--cEEEecCCchHHHHHHHHHHHHHcCCC
Confidence            6899999999999999999999999999999999865   22222     2  5678899987 3367778888888864


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                        |++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.++ ||++||..+..+.
T Consensus        72 --d~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~  136 (239)
T 2ekp_A           72 --HVLVHAAAVNVR--KPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGR-VLFIGSVTTFTAG  136 (239)
T ss_dssp             --CEEEECCCCCCC--CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCC
T ss_pred             --CEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcE-EEEECchhhccCC
Confidence              599999998754  4478899999999999999999999999999998877777 9999999988765

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=99.92  E-value=3.2e-25  Score=174.60  Aligned_cols=144  Identities=13%  Similarity=0.236  Sum_probs=108.4

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~  125 (206)
                      ++++++|+++||||++|||+++|++|+++|++|++++|+.++..   +++     +.++..+.+|++|..  ++.++.+.
T Consensus         4 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~---~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~   75 (257)
T 3tl3_A            4 SMEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVV---ADL-----GDRARFAAADVTDEAAVASALDLAE   75 (257)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHHH---HHT-----CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHHH---Hhc-----CCceEEEECCCCCHHHHHHHHHHHH
Confidence            46678999999999999999999999999999999999654322   222     456888999999852  44445554


Q ss_pred             HHhcCCCccEEEEeccccCCcc--cccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHh--------CCCCceEEEeccc
Q 028656          126 EAIEGLDVGVLINNVGISYPYA--RFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLK--------RKKGLSMLNIGKA  195 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~--------~~~g~~iv~isS~  195 (206)
                      + +++  +|++|||||+.....  .+..+.+.++|++++++|+.|++.++++++|.|++        ++.|+ ||++||.
T Consensus        76 ~-~g~--id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~-iv~isS~  151 (257)
T 3tl3_A           76 T-MGT--LRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGV-IINTASV  151 (257)
T ss_dssp             H-HSC--EEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEE-EEEECCC
T ss_pred             H-hCC--CCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcE-EEEEcch
Confidence            4 664  669999999875321  11235899999999999999999999999999987        44555 9999999


Q ss_pred             cccccccC
Q 028656          196 ELMCSVRF  203 (206)
Q Consensus       196 ~~~~~~~~  203 (206)
                      .+..+.|.
T Consensus       152 ~~~~~~~~  159 (257)
T 3tl3_A          152 AAFDGQIG  159 (257)
T ss_dssp             C--CCHHH
T ss_pred             hhcCCCCC
Confidence            99887763

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.92  E-value=1.7e-24  Score=169.86  Aligned_cols=138  Identities=23%  Similarity=0.329  Sum_probs=110.2

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKE  126 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  126 (206)
                      +..++++|+++||||++|||++++++|+++|++|++++|+.+..+    ++     + ....+ +|+.++    ++.+.+
T Consensus        13 ~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~----~~-----~-~~~~~-~D~~~~----~~~~~~   77 (249)
T 1o5i_A           13 MELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK----RS-----G-HRYVV-CDLRKD----LDLLFE   77 (249)
T ss_dssp             ---CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH----HT-----C-SEEEE-CCTTTC----HHHHHH
T ss_pred             HHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH----hh-----C-CeEEE-eeHHHH----HHHHHH
Confidence            344578999999999999999999999999999999999973322    11     2 35566 898433    344444


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ...  ++|++|||||+...  .++.+.+.++|++.+++|+.|++.+++.++|.|++++.++ ||++||..+..+.|..
T Consensus        78 ~~~--~iD~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  150 (249)
T 1o5i_A           78 KVK--EVDILVLNAGGPKA--GFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGR-IVAITSFSVISPIENL  150 (249)
T ss_dssp             HSC--CCSEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCTTB
T ss_pred             Hhc--CCCEEEECCCCCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcE-EEEEcchHhcCCCCCC
Confidence            444  46699999998754  3488899999999999999999999999999998887777 9999999998877643

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=99.92  E-value=2.4e-24  Score=169.02  Aligned_cols=145  Identities=22%  Similarity=0.338  Sum_probs=122.0

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC-hhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+ .++++++.++++..  +.++..+.+|+++.  .++.++++.+.
T Consensus         5 l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (258)
T 3afn_B            5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRAD--GGDAAFFAADLATSEACQQLVDEFVAK   82 (258)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999 78888888877663  45788999999975  35666777777


Q ss_pred             hcCCCccEEEEeccc-cCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC--C---CceEEEeccccccc-c
Q 028656          128 IEGLDVGVLINNVGI-SYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK--K---GLSMLNIGKAELMC-S  200 (206)
Q Consensus       128 ~~~~~id~lvnnAg~-~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~---g~~iv~isS~~~~~-~  200 (206)
                      +++  +|++|||||. ...  .++.+.+.+++++++++|+.|++.++++++|.|.+++  .   ++ ||++||..+.. +
T Consensus        83 ~g~--id~vi~~Ag~~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~-iv~~sS~~~~~~~  157 (258)
T 3afn_B           83 FGG--IDVLINNAGGLVGR--KPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSA-VISTGSIAGHTGG  157 (258)
T ss_dssp             HSS--CSEEEECCCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEE-EEEECCTHHHHCC
T ss_pred             cCC--CCEEEECCCCcCCc--CccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcE-EEEecchhhccCC
Confidence            775  5599999997 433  4478889999999999999999999999999987654  2   55 99999998876 5


Q ss_pred             cc
Q 028656          201 VR  202 (206)
Q Consensus       201 ~~  202 (206)
                      .|
T Consensus       158 ~~  159 (258)
T 3afn_B          158 GP  159 (258)
T ss_dssp             CT
T ss_pred             CC
Confidence            54

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=99.92  E-value=2.4e-24  Score=168.00  Aligned_cols=143  Identities=29%  Similarity=0.397  Sum_probs=117.0

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      +++++|+++||||++|||++++++|+++|++|++++|+.++++++.+++    .+  ...+.+|+++.  +.++++.+.+
T Consensus         3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~--~~~~~~D~~~~--~~~~~~~~~~   74 (244)
T 3d3w_A            3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC----PG--IEPVCVDLGDW--EATERALGSV   74 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----TT--CEEEECCTTCH--HHHHHHHTTC
T ss_pred             cccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----CC--CCEEEEeCCCH--HHHHHHHHHc
Confidence            4567999999999999999999999999999999999988777655443    22  34568999976  4555555544


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~~  204 (206)
                      +  ++|++|||||+...  .++.+.+.+++++.+++|+.|++.+++++.|.|.+++ .++ ||++||..+..+.|..
T Consensus        75 ~--~id~vi~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~~  146 (244)
T 3d3w_A           75 G--PVDLLVNNAAVALL--QPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGA-IVNVSSQCSQRAVTNH  146 (244)
T ss_dssp             C--CCCEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEE-EEEECCGGGTSCCTTB
T ss_pred             C--CCCEEEECCccCCC--cchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcE-EEEeCchhhccCCCCC
Confidence            4  46699999998754  3478889999999999999999999999999998776 566 9999999988876643

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=99.92  E-value=1.9e-24  Score=171.04  Aligned_cols=151  Identities=14%  Similarity=0.121  Sum_probs=119.6

Q ss_pred             CcccccCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHH
Q 028656           46 AKNLRKYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGV  121 (206)
Q Consensus        46 ~~~~~~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~  121 (206)
                      .+..+.++|+++||||+  +|||+++|++|+++|++|++++|+....+. .+++.+.++  .+.++.+|+++.  +++.+
T Consensus         7 ~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~   83 (271)
T 3ek2_A            7 HHMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDR-ITEFAAEFG--SELVFPCDVADDAQIDALF   83 (271)
T ss_dssp             --CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHH-HHHHHHHTT--CCCEEECCTTCHHHHHHHH
T ss_pred             CCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHH-HHHHHHHcC--CcEEEECCCCCHHHHHHHH
Confidence            34556789999999998  999999999999999999999999544433 444444333  367889999985  35666


Q ss_pred             HHHHHHhcCCCccEEEEeccccCCcc--ccccc-CCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          122 ERIKEAIEGLDVGVLINNVGISYPYA--RFFHE-VDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       122 ~~~~~~~~~~~id~lvnnAg~~~~~~--~~~~~-~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      +++.+.+++  +|++|||||+.....  .++.+ .+.+++++++++|+.|++.++++++|.|++  .|+ ||++||.++.
T Consensus        84 ~~~~~~~g~--id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~g~-iv~isS~~~~  158 (271)
T 3ek2_A           84 ASLKTHWDS--LDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSD--DAS-LLTLSYLGAE  158 (271)
T ss_dssp             HHHHHHCSC--EEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEE--EEE-EEEEECGGGT
T ss_pred             HHHHHHcCC--CCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhcc--Cce-EEEEeccccc
Confidence            777777774  669999999876421  23455 899999999999999999999999998863  456 9999999999


Q ss_pred             ccccCC
Q 028656          199 CSVRFH  204 (206)
Q Consensus       199 ~~~~~~  204 (206)
                      .+.|..
T Consensus       159 ~~~~~~  164 (271)
T 3ek2_A          159 RAIPNY  164 (271)
T ss_dssp             SBCTTT
T ss_pred             cCCCCc
Confidence            888754

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=99.92  E-value=8.4e-25  Score=191.44  Aligned_cols=149  Identities=25%  Similarity=0.300  Sum_probs=113.1

Q ss_pred             CcccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc---------ChhhHHHHHHHHHHhcCCceEEEEEEecCCC
Q 028656           46 AKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR---------NPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD  116 (206)
Q Consensus        46 ~~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (206)
                      ....+++||+++||||++|||+++|++|+++|++|++++|         +.+.++++.++++..+  ...   .+|+++.
T Consensus        12 ~~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~--~~~---~~D~~d~   86 (613)
T 3oml_A           12 DGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAG--GEA---VADYNSV   86 (613)
T ss_dssp             ---CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTT--CCE---EECCCCG
T ss_pred             ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhC--CeE---EEEeCCH
Confidence            3446688999999999999999999999999999999988         6777888888887653  222   3677764


Q ss_pred             --chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          117 --LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       117 --~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                        .++.++.+.+.+++  +|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++.|+ ||++||
T Consensus        87 ~~~~~~~~~~~~~~g~--iDiLVnnAGi~~~--~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~-IV~isS  161 (613)
T 3oml_A           87 IDGAKVIETAIKAFGR--VDILVNNAGILRD--RSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGR-IIMTSS  161 (613)
T ss_dssp             GGHHHHHC------------CEECCCCCCCC--CCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEE-EEEECC
T ss_pred             HHHHHHHHHHHHHCCC--CcEEEECCCCCCC--CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEECC
Confidence              35666777777775  5599999999865  4588999999999999999999999999999999888777 999999


Q ss_pred             ccccccccCC
Q 028656          195 AELMCSVRFH  204 (206)
Q Consensus       195 ~~~~~~~~~~  204 (206)
                      .++..+.|.+
T Consensus       162 ~a~~~~~~~~  171 (613)
T 3oml_A          162 NSGIYGNFGQ  171 (613)
T ss_dssp             HHHHHCCTTC
T ss_pred             HHHcCCCCCC
Confidence            9999887754

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=99.92  E-value=1.8e-24  Score=171.93  Aligned_cols=146  Identities=13%  Similarity=0.145  Sum_probs=118.4

Q ss_pred             cCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           51 KYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++|+++||||+  +|||+++|++|+++|++|++++|+.+ .++..+++.+..+  .+..+.+|+++.  +++.++.+.+
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~   80 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELN--SPYVYELDVSKEEHFKSLYNSVKK   80 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcC--CcEEEEcCCCCHHHHHHHHHHHHH
Confidence            568999999999  99999999999999999999999986 4445555554332  267789999975  3556667777


Q ss_pred             HhcCCCccEEEEeccccCCc--ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPY--ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++  +|++|||||+....  ..++.+.+.++|++++++|+.|++.++++++|.|++  .|+ ||++||..+..+.|..
T Consensus        81 ~~g~--id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~-iv~isS~~~~~~~~~~  155 (275)
T 2pd4_A           81 DLGS--LDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNN--GAS-VLTLSYLGSTKYMAHY  155 (275)
T ss_dssp             HTSC--EEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEE-EEEEECGGGTSBCTTC
T ss_pred             HcCC--CCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc--CCE-EEEEecchhcCCCCCc
Confidence            7774  66999999987531  134778999999999999999999999999999863  356 9999999998877644

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=99.92  E-value=2e-24  Score=170.45  Aligned_cols=148  Identities=18%  Similarity=0.176  Sum_probs=118.9

Q ss_pred             cccCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           49 LRKYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        49 ~~~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      .++++|+++||||+  +|||++++++|+++|++|++++|+.+ .++..+++.+..+  .+..+.+|++|.  +++.++.+
T Consensus         4 ~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~   80 (261)
T 2wyu_A            4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALG--GALLFRADVTQDEELDALFAGV   80 (261)
T ss_dssp             ECCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcC--CcEEEECCCCCHHHHHHHHHHH
Confidence            44679999999999  99999999999999999999999975 4444455544322  267889999975  35666777


Q ss_pred             HHHhcCCCccEEEEeccccCCc--ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          125 KEAIEGLDVGVLINNVGISYPY--ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      .+.+++  +|++|||||+....  ..++.+.+.++|++++++|+.|++.++++++|.|++  .|+ ||++||..+..+.|
T Consensus        81 ~~~~g~--iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~-iv~isS~~~~~~~~  155 (261)
T 2wyu_A           81 KEAFGG--LDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLRE--GGG-IVTLTYYASEKVVP  155 (261)
T ss_dssp             HHHHSS--EEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE--EEE-EEEEECGGGTSBCT
T ss_pred             HHHcCC--CCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhcc--CCE-EEEEecccccCCCC
Confidence            777775  66999999986531  134778999999999999999999999999998853  356 99999999888776


Q ss_pred             CC
Q 028656          203 FH  204 (206)
Q Consensus       203 ~~  204 (206)
                      ..
T Consensus       156 ~~  157 (261)
T 2wyu_A          156 KY  157 (261)
T ss_dssp             TC
T ss_pred             Cc
Confidence            43

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=99.92  E-value=4e-24  Score=170.45  Aligned_cols=147  Identities=13%  Similarity=0.141  Sum_probs=118.9

Q ss_pred             ccCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           50 RKYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        50 ~~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      ++++|+++||||+  +|||+++|++|+++|++|++++|+.  .++..+++.+.++  .+..+.+|+++.  +++.++++.
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~   98 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAEFN--PAAVLPCDVISDQEIKDLFVELG   98 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGGGC--CSEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHhcC--CceEEEeecCCHHHHHHHHHHHH
Confidence            3679999999988  8899999999999999999999987  3344455554433  367889999985  356667777


Q ss_pred             HHhcCCCccEEEEeccccCCc--cccccc-CCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          126 EAIEGLDVGVLINNVGISYPY--ARFFHE-VDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~--~~~~~~-~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      +.+++  +|++|||||+....  ..++.+ .+.+++++++++|+.|++.++++++|.|.++ .++ ||++||.++..+.|
T Consensus        99 ~~~g~--id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~g~-iv~isS~~~~~~~~  174 (280)
T 3nrc_A           99 KVWDG--LDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNR-NAS-MVALTYIGAEKAMP  174 (280)
T ss_dssp             HHCSS--CCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT-TCE-EEEEECGGGTSCCT
T ss_pred             HHcCC--CCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCe-EEEEeccccccCCC
Confidence            77775  55999999987542  123555 8999999999999999999999999988755 566 99999999998887


Q ss_pred             CC
Q 028656          203 FH  204 (206)
Q Consensus       203 ~~  204 (206)
                      ..
T Consensus       175 ~~  176 (280)
T 3nrc_A          175 SY  176 (280)
T ss_dssp             TT
T ss_pred             Cc
Confidence            54

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=99.92  E-value=5.6e-24  Score=165.86  Aligned_cols=141  Identities=26%  Similarity=0.350  Sum_probs=116.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++    .+  ...+.+|+++.  +.++++.+.++
T Consensus         4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~--~~~~~~D~~~~--~~~~~~~~~~~   75 (244)
T 1cyd_A            4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC----PG--IEPVCVDLGDW--DATEKALGGIG   75 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----TT--CEEEECCTTCH--HHHHHHHTTCC
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----cC--CCcEEecCCCH--HHHHHHHHHcC
Confidence            467999999999999999999999999999999999988776655432    22  34558999986  55555555444


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccccccC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~~~~~  203 (206)
                        ++|++|||||+...  .++.+.+.+++++.+++|+.|++.+++++.|.|.+++ .++ ||++||..+..+.|.
T Consensus        76 --~id~vi~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~-iv~~sS~~~~~~~~~  145 (244)
T 1cyd_A           76 --PVDLLVNNAALVIM--QPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGS-IVNVSSMVAHVTFPN  145 (244)
T ss_dssp             --CCSEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEE-EEEECCGGGTSCCTT
T ss_pred             --CCCEEEECCcccCC--CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeE-EEEEcchhhcCCCCC
Confidence              46699999998764  3478889999999999999999999999999998776 566 999999998887664

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=99.92  E-value=6.7e-24  Score=166.67  Aligned_cols=140  Identities=23%  Similarity=0.288  Sum_probs=112.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCc-EEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC-c--hHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLN-LVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD-L--DEGVERIK  125 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~~~  125 (206)
                      ++++|+++||||++|||++++++|+++|++ |++++|+.+.  +..+++.+..++.++..+.+|++|. .  ++.++++.
T Consensus         2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (254)
T 1sby_A            2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIF   79 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHH
Confidence            356999999999999999999999999997 9999998742  2233444443456788999999976 2  56667777


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC---CCceEEEecccccccccc
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK---KGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---~g~~iv~isS~~~~~~~~  202 (206)
                      +.+++  +|++|||||+.          +.+++++++++|+.|++.++++++|.|.+++   .|+ ||++||.++..+.|
T Consensus        80 ~~~g~--id~lv~~Ag~~----------~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~  146 (254)
T 1sby_A           80 DQLKT--VDILINGAGIL----------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGI-IANICSVTGFNAIH  146 (254)
T ss_dssp             HHHSC--CCEEEECCCCC----------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEE-EEEECCGGGTSCCT
T ss_pred             HhcCC--CCEEEECCccC----------CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCE-EEEECchhhccCCC
Confidence            88876  45999999974          2355889999999999999999999997664   355 99999999988776


Q ss_pred             CC
Q 028656          203 FH  204 (206)
Q Consensus       203 ~~  204 (206)
                      ..
T Consensus       147 ~~  148 (254)
T 1sby_A          147 QV  148 (254)
T ss_dssp             TS
T ss_pred             Cc
Confidence            43

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=99.92  E-value=2.8e-24  Score=170.06  Aligned_cols=141  Identities=21%  Similarity=0.340  Sum_probs=116.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||++++++|+++|++|++++|+.+++++..+++.+...+.++..+.+|++|.  +++.++.+.+.+
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            568999999999999999999999999999999999988887777775433345688899999975  356667777788


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC---CCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK---KGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||+..          .++|++.+++|+.|++.+++.++|.|++++   .++ ||++||..+..+.|..
T Consensus        85 g~--id~lv~~Ag~~~----------~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~-iv~isS~~~~~~~~~~  150 (267)
T 2gdz_A           85 GR--LDILVNNAGVNN----------EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGI-IINMSSLAGLMPVAQQ  150 (267)
T ss_dssp             SC--CCEEEECCCCCC----------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEE-EEEECCGGGTSCCTTC
T ss_pred             CC--CCEEEECCCCCC----------hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCE-EEEeCCccccCCCCCC
Confidence            86  459999999752          245789999999999999999999997653   355 9999999998876643

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=99.91  E-value=4.7e-24  Score=168.89  Aligned_cols=148  Identities=20%  Similarity=0.239  Sum_probs=123.0

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-ChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVER  123 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~  123 (206)
                      ..+++++|+++||||++|||++++++|+++|++|++++| +.+++++..++++..  +.++..+.+|++|.  .++.+++
T Consensus        15 ~~~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~   92 (274)
T 1ja9_A           15 ASKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL--GAQGVAIQADISKPSEVVALFDK   92 (274)
T ss_dssp             -CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHH
Confidence            345678999999999999999999999999999999999 777788877777663  45678899999975  2455667


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc-cccc
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM-CSVR  202 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~-~~~~  202 (206)
                      +.+.+++  +|++|||||+...  .++.+.+.+++++.+++|+.|++.++++++|.|+ ++ ++ ||++||..+. .+.|
T Consensus        93 ~~~~~~~--~d~vi~~Ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~-~~-iv~~sS~~~~~~~~~  165 (274)
T 1ja9_A           93 AVSHFGG--LDFVMSNSGMEVW--CDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCR-RG-GR-IILTSSIAAVMTGIP  165 (274)
T ss_dssp             HHHHHSC--EEEEECCCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEE-EE-EE-EEEECCGGGTCCSCC
T ss_pred             HHHHcCC--CCEEEECCCCCCC--cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hC-CE-EEEEcChHhccCCCC
Confidence            7777775  6699999998754  3477889999999999999999999999999886 33 66 9999999887 5555


Q ss_pred             C
Q 028656          203 F  203 (206)
Q Consensus       203 ~  203 (206)
                      .
T Consensus       166 ~  166 (274)
T 1ja9_A          166 N  166 (274)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=99.91  E-value=1.5e-24  Score=173.72  Aligned_cols=137  Identities=20%  Similarity=0.247  Sum_probs=116.0

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKE  126 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  126 (206)
                      +..+++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++     +.++..+.+|++|.  +.++++.+
T Consensus        10 ~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~d~--~~v~~~~~   82 (291)
T 3rd5_A           10 DLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDL--SSVRRFAD   82 (291)
T ss_dssp             GCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS-----SSEEEEEECCTTCH--HHHHHHHH
T ss_pred             hccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCeeEEEcCCCCH--HHHHHHHH
Confidence            334578999999999999999999999999999999999998887766554     45789999999987  56666666


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      .++  ++|++|||||+..+    ..+.+.+++++++++|+.|++.++++++|.|.+    + ||++||.++..+.
T Consensus        83 ~~~--~iD~lv~nAg~~~~----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~----r-iv~isS~~~~~~~  146 (291)
T 3rd5_A           83 GVS--GADVLINNAGIMAV----PYALTVDGFESQIGTNHLGHFALTNLLLPRLTD----R-VVTVSSMAHWPGR  146 (291)
T ss_dssp             TCC--CEEEEEECCCCCSC----CCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE----E-EEEECCGGGTTCC
T ss_pred             hcC--CCCEEEECCcCCCC----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh----h-eeEeechhhccCC
Confidence            664  57799999998753    346778889999999999999999999998854    4 9999999988663

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=99.91  E-value=2.4e-23  Score=164.42  Aligned_cols=151  Identities=19%  Similarity=0.225  Sum_probs=119.7

Q ss_pred             CcccccCCcEEEEECCCChHHHHHHHHHHHCC---CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHH
Q 028656           46 AKNLRKYGSWALVTGPTDGIGKSFAFQLAKTG---LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEG  120 (206)
Q Consensus        46 ~~~~~~~~k~vlItGas~giG~~~a~~l~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~  120 (206)
                      .....+++|+++||||++|||++++++|+++|   ++|++++|+.++.+++ +++...  +.++.++.+|+++.  +++.
T Consensus        14 ~~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~~--~~~~~~~~~Dl~~~~~v~~~   90 (267)
T 1sny_A           14 LVPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKN--HSNIHILEIDLRNFDAYDKL   90 (267)
T ss_dssp             ------CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHHH--CTTEEEEECCTTCGGGHHHH
T ss_pred             ccccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhcc--CCceEEEEecCCChHHHHHH
Confidence            34455789999999999999999999999999   9999999998776644 334333  34688899999975  3666


Q ss_pred             HHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC------C-----CCceE
Q 028656          121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR------K-----KGLSM  189 (206)
Q Consensus       121 ~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~------~-----~g~~i  189 (206)
                      ++.+.+.++..++|++|||||+..+ ..++.+.+.+++++.+++|+.|++.++++++|.|.++      +     .++ |
T Consensus        91 ~~~~~~~~g~~~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-i  168 (267)
T 1sny_A           91 VADIEGVTKDQGLNVLFNNAGIAPK-SARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAA-I  168 (267)
T ss_dssp             HHHHHHHHGGGCCSEEEECCCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCE-E
T ss_pred             HHHHHHhcCCCCccEEEECCCcCCC-ccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCce-E
Confidence            7777778873235699999998762 2447888999999999999999999999999999876      3     466 9


Q ss_pred             EEeccccccccc
Q 028656          190 LNIGKAELMCSV  201 (206)
Q Consensus       190 v~isS~~~~~~~  201 (206)
                      |++||..+..+.
T Consensus       169 v~isS~~~~~~~  180 (267)
T 1sny_A          169 INMSSILGSIQG  180 (267)
T ss_dssp             EEECCGGGCSTT
T ss_pred             EEEecccccccC
Confidence            999999987765

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=99.91  E-value=3.9e-24  Score=169.12  Aligned_cols=146  Identities=15%  Similarity=0.133  Sum_probs=115.4

Q ss_pred             cCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           51 KYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++|+++||||+  +|||+++|++|+++|++|++++|+. +.++..+++.+..+.  ...+.+|+++.  +++.++++.+
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~~~--~~~~~~D~~~~~~v~~~~~~~~~   83 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLGS--DIVLQCDVAEDASIDTMFAELGK   83 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHTTC--CCEEECCTTCHHHHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhcCC--cEEEEccCCCHHHHHHHHHHHHH
Confidence            568999999999  9999999999999999999999987 455555555544322  36788999985  2344455555


Q ss_pred             HhcCCCccEEEEeccccCCc--cccccc-CCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPY--ARFFHE-VDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~--~~~~~~-~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .++  ++|++|||||+....  ..++.+ .+.++|++++++|+.|++.++++++|.|.+  .|+ ||++||..+..+.|.
T Consensus        84 ~~g--~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~-iv~isS~~~~~~~~~  158 (265)
T 1qsg_A           84 VWP--KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP--GSA-LLTLSYLGAERAIPN  158 (265)
T ss_dssp             TCS--SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEE-EEEEECGGGTSBCTT
T ss_pred             HcC--CCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc--CCE-EEEEcchhhccCCCC
Confidence            555  477999999987531  134677 899999999999999999999999999853  356 999999999887764


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      .
T Consensus       159 ~  159 (265)
T 1qsg_A          159 Y  159 (265)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=99.91  E-value=8.7e-25  Score=178.14  Aligned_cols=148  Identities=12%  Similarity=0.089  Sum_probs=115.5

Q ss_pred             CCcEEEEECCCC--hHHHHHHHHHHHCCCcEEEEEcCh---------hhHHHHHHHHHH-hcCCceEEEEEEecCCC---
Q 028656           52 YGSWALVTGPTD--GIGKSFAFQLAKTGLNLVLVGRNP---------DKLKDVSDSIQA-KYAKTQIKSVVVDFSGD---  116 (206)
Q Consensus        52 ~~k~vlItGas~--giG~~~a~~l~~~g~~V~~~~r~~---------~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~---  116 (206)
                      ++|+++||||++  |||+++|++|+++|++|++++|++         ++++...+.... .........+.+|+++.   
T Consensus         1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~   80 (329)
T 3lt0_A            1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN   80 (329)
T ss_dssp             CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred             CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence            479999999986  999999999999999999887665         222221111111 11224477888998854   


Q ss_pred             -------------------chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHh
Q 028656          117 -------------------LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVL  177 (206)
Q Consensus       117 -------------------~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~  177 (206)
                                         +++.++.+.+.+++  +|++|||||+......++.+.+.++|++++++|+.|++.++++++
T Consensus        81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~--iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~  158 (329)
T 3lt0_A           81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGK--INMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFV  158 (329)
T ss_dssp             GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCC--EEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred             hhhhhhcccccccccCHHHHHHHHHHHHHhcCC--CcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence                               25667888888885  669999999864334568899999999999999999999999999


Q ss_pred             hhhHhCCCCceEEEeccccccccccCC
Q 028656          178 PGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       178 ~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      |.|+++  |+ ||++||.++..+.|..
T Consensus       159 p~m~~~--g~-Iv~isS~~~~~~~~~~  182 (329)
T 3lt0_A          159 NIMKPQ--SS-IISLTYHASQKVVPGY  182 (329)
T ss_dssp             GGEEEE--EE-EEEEECGGGTSCCTTC
T ss_pred             HHHhhC--Ce-EEEEeCccccCCCCcc
Confidence            999764  66 9999999999888854

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=99.91  E-value=6.8e-24  Score=165.80  Aligned_cols=134  Identities=15%  Similarity=0.200  Sum_probs=111.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHH-CCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAK-TGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      ++|+++||||++|||+++|++|++ .|++|++.+|+.+.            ....+..+.+|++|.  +.++.+.+....
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~------------~~~~~~~~~~Dv~~~--~~v~~~~~~~~~   68 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSF------------SAENLKFIKADLTKQ--QDITNVLDIIKN   68 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCC------------CCTTEEEEECCTTCH--HHHHHHHHHTTT
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccccc------------ccccceEEecCcCCH--HHHHHHHHHHHh
Confidence            589999999999999999999999 78899999998652            123468899999986  445555554443


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .++|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|+++  |+ ||++||..+..+.|..
T Consensus        69 ~~id~lv~nAg~~~~--~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--g~-iv~~sS~~~~~~~~~~  137 (244)
T 4e4y_A           69 VSFDGIFLNAGILIK--GSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVG--AS-IVFNGSDQCFIAKPNS  137 (244)
T ss_dssp             CCEEEEEECCCCCCC--BCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEE--EE-EEEECCGGGTCCCTTB
T ss_pred             CCCCEEEECCccCCC--CCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccC--cE-EEEECCHHHccCCCCC
Confidence            368899999999865  458899999999999999999999999999988654  56 9999999999888754

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.90  E-value=2.9e-23  Score=161.97  Aligned_cols=143  Identities=20%  Similarity=0.303  Sum_probs=118.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++|+++||||++|||++++++|+++|  ++|++++|+.++++++.+.     .+.++.++.+|+++.  +++.++++.+.
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI-----KDSRVHVLPLTVTCDKSLDTFVSKVGEI   76 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC-----CCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhc-----cCCceEEEEeecCCHHHHHHHHHHHHHh
Confidence            57899999999999999999999999  9999999998877654321     245788899999975  35666777777


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC------C-----CCceEEEecccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR------K-----KGLSMLNIGKAE  196 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~------~-----~g~~iv~isS~~  196 (206)
                      ++..++|++|||||+..+ ..++.+.+.+++++++++|+.|++.++++++|.|.++      +     .++ ||++||..
T Consensus        77 ~g~~~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-iv~isS~~  154 (250)
T 1yo6_A           77 VGSDGLSLLINNAGVLLS-YGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAA-VITISSGL  154 (250)
T ss_dssp             HGGGCCCEEEECCCCCCC-BCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCE-EEEECCGG
T ss_pred             cCCCCCcEEEECCcccCC-CcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcE-EEEeccCc
Confidence            772235599999998762 2457888999999999999999999999999999876      4     566 99999998


Q ss_pred             ccccc
Q 028656          197 LMCSV  201 (206)
Q Consensus       197 ~~~~~  201 (206)
                      +..+.
T Consensus       155 ~~~~~  159 (250)
T 1yo6_A          155 GSITD  159 (250)
T ss_dssp             GCSTT
T ss_pred             cccCC
Confidence            87765

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=99.90  E-value=2.6e-24  Score=168.18  Aligned_cols=141  Identities=17%  Similarity=0.251  Sum_probs=94.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCch-HHHHHHHHHh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLD-EGVERIKEAI  128 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~  128 (206)
                      ++++|+++||||++|||+++|++|++ |++|++++|+.+++++..+       ...+..+.+|+++... +...+..+.+
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~~~   73 (245)
T 3e9n_A            2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAE-------IEGVEPIESDIVKEVLEEGGVDKLKNL   73 (245)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHT-------STTEEEEECCHHHHHHTSSSCGGGTTC
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHh-------hcCCcceecccchHHHHHHHHHHHHhc
Confidence            45699999999999999999999988 9999999999887766543       1246778888875411 1112222333


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +  ++|++|||||+...  .++.+.+.++|++++++|+.|++.++++++|.|++++ |+ ||++||.++..+.|..
T Consensus        74 ~--~id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~-iv~isS~~~~~~~~~~  143 (245)
T 3e9n_A           74 D--HVDTLVHAAAVARD--TTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-GC-VIYINSGAGNGPHPGN  143 (245)
T ss_dssp             S--CCSEEEECC------------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CE-EEEEC----------C
T ss_pred             C--CCCEEEECCCcCCC--CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-Ce-EEEEcCcccccCCCCc
Confidence            4  46699999999865  3478889999999999999999999999999997765 76 9999999999887754

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=99.90  E-value=6.4e-24  Score=163.83  Aligned_cols=125  Identities=19%  Similarity=0.124  Sum_probs=106.9

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      ++++|+++||||++|||+++|++|+++|++|++++|+.+                      +|++|.  +.++++.++++
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~----------------------~D~~~~--~~v~~~~~~~g   58 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG----------------------LDISDE--KSVYHYFETIG   58 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT----------------------CCTTCH--HHHHHHHHHHC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc----------------------cCCCCH--HHHHHHHHHhC
Confidence            356999999999999999999999999999999999764                      788876  66777777776


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +  +|++|||||+..+. .++.+.+.++|++.+++|+.|++.++++++|.|++  .|+ ||++||..+..+.|..
T Consensus        59 ~--id~lv~nAg~~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~--~g~-iv~~sS~~~~~~~~~~  127 (223)
T 3uce_A           59 A--FDHLIVTAGSYAPA-GKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQ--GGS-ITLTSGMLSRKVVANT  127 (223)
T ss_dssp             S--EEEEEECCCCCCCC-SCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEE--EEE-EEEECCGGGTSCCTTC
T ss_pred             C--CCEEEECCCCCCCC-CCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccC--CeE-EEEecchhhccCCCCc
Confidence            4  66999999987432 45889999999999999999999999999999854  356 9999999999887754

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=99.90  E-value=4.5e-23  Score=174.56  Aligned_cols=145  Identities=21%  Similarity=0.325  Sum_probs=118.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      +++|+++||||++|||+++|++|+++|++|++++|+... +++.+...+.  +  ...+.+|++|..  ++.++++.+.+
T Consensus       211 l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~-~~l~~~~~~~--~--~~~~~~Dvtd~~~v~~~~~~~~~~~  285 (454)
T 3u0b_A          211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAA-EDLKRVADKV--G--GTALTLDVTADDAVDKITAHVTEHH  285 (454)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGH-HHHHHHHHHH--T--CEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHHHc--C--CeEEEEecCCHHHHHHHHHHHHHHc
Confidence            579999999999999999999999999999999997532 2222222222  2  357889999763  56667777777


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++ ++|++|||||+...  +++.+.+.++|++++++|+.|++++++++.|.|++++.++ ||++||.++..+.|++
T Consensus       286 g~-~id~lV~nAGv~~~--~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~-iV~iSS~a~~~g~~g~  357 (454)
T 3u0b_A          286 GG-KVDILVNNAGITRD--KLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGR-VIGLSSMAGIAGNRGQ  357 (454)
T ss_dssp             TT-CCSEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCE-EEEECCHHHHHCCTTC
T ss_pred             CC-CceEEEECCcccCC--CccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCE-EEEEeChHhCCCCCCC
Confidence            65 35699999999876  4588999999999999999999999999999988777777 9999999999888865

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=99.90  E-value=1.7e-23  Score=165.87  Aligned_cols=143  Identities=18%  Similarity=0.243  Sum_probs=113.9

Q ss_pred             cCCcEEEEECC--CChHHHHHHHHHHHCCCcEEEEEcChhh-HHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           51 KYGSWALVTGP--TDGIGKSFAFQLAKTGLNLVLVGRNPDK-LKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        51 ~~~k~vlItGa--s~giG~~~a~~l~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      +++|+++||||  ++|||+++|++|+++|++|++++|+.++ ++++.+++     +.++..+.+|+++.  +++.++++.
T Consensus         5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~   79 (269)
T 2h7i_A            5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL-----PAKAPLLELDVQNEEHLASLAGRVT   79 (269)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS-----SSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhc-----CCCceEEEccCCCHHHHHHHHHHHH
Confidence            56999999999  9999999999999999999999998765 34443332     33567889999985  356667777


Q ss_pred             HHhcC-CCccEEEEeccccCCc---ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          126 EAIEG-LDVGVLINNVGISYPY---ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       126 ~~~~~-~~id~lvnnAg~~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      +.++. .++|++|||||+..+.   ..++.+.+.++|++.+++|+.|++.++++++|.|.+.  |+ ||++||..+ .+.
T Consensus        80 ~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--g~-iv~iss~~~-~~~  155 (269)
T 2h7i_A           80 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPG--GS-IVGMDFDPS-RAM  155 (269)
T ss_dssp             HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE--EE-EEEEECCCS-SCC
T ss_pred             HHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccC--Ce-EEEEcCccc-ccc
Confidence            77771 1366999999987521   2457889999999999999999999999999998643  56 999999776 444


Q ss_pred             c
Q 028656          202 R  202 (206)
Q Consensus       202 ~  202 (206)
                      |
T Consensus       156 ~  156 (269)
T 2h7i_A          156 P  156 (269)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.90  E-value=1.7e-23  Score=162.77  Aligned_cols=136  Identities=13%  Similarity=0.036  Sum_probs=111.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~  129 (206)
                      ++|+++||||++|||++++++|+++|++|++++|+.++.+            .....+.+|+++.  +++.++++.+.++
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~   69 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA------------DSNILVDGNKNWTEQEQSILEQTASSLQ   69 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS------------SEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc------------cccEEEeCCCCCHHHHHHHHHHHHHHhC
Confidence            5799999999999999999999999999999999976532            1346678898864  2455677777773


Q ss_pred             CCCccEEEEeccccCCccccc-ccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          130 GLDVGVLINNVGISYPYARFF-HEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~-~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ..++|++|||||+...  .++ .+.+.++|++.+++|+.|++.++++++|.|++  .|+ ||++||..+..+.|..
T Consensus        70 ~g~id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~-iv~isS~~~~~~~~~~  140 (236)
T 1ooe_A           70 GSQVDGVFCVAGGWAG--GSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP--GGL-LQLTGAAAAMGPTPSM  140 (236)
T ss_dssp             TCCEEEEEECCCCCCC--BCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--EEE-EEEECCGGGGSCCTTB
T ss_pred             CCCCCEEEECCcccCC--CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc--CCE-EEEECchhhccCCCCc
Confidence            1257799999998764  336 67888999999999999999999999999854  356 9999999998877644

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=99.89  E-value=2.3e-23  Score=162.55  Aligned_cols=137  Identities=10%  Similarity=-0.023  Sum_probs=111.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      .++|+++||||++|||++++++|+++|++|++++|+.++.+            .....+.+|++|.  +++.++++.+.+
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~v~~~~~~~~~~~   72 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------------SASVIVKMTDSFTEQADQVTAEVGKLL   72 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------------SEEEECCCCSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc------------CCcEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999999999999999976532            1346678899874  355667777777


Q ss_pred             cCCCccEEEEeccccCCccccc-ccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFF-HEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~-~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +.-++|++|||||+...  .++ .+.+.+++++.+++|+.|++.++++++|.|++  .|+ ||++||.++..+.|..
T Consensus        73 ~~g~iD~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~--~g~-iv~isS~~~~~~~~~~  144 (241)
T 1dhr_A           73 GDQKVDAILCVAGGWAG--GNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE--GGL-LTLAGAKAALDGTPGM  144 (241)
T ss_dssp             TTCCEEEEEECCCCCCC--BCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--EEE-EEEECCGGGGSCCTTB
T ss_pred             CCCCCCEEEEcccccCC--CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhcc--CCE-EEEECCHHHccCCCCc
Confidence            31147799999998764  346 77889999999999999999999999999854  356 9999999998877644

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=99.89  E-value=2.9e-23  Score=168.39  Aligned_cols=151  Identities=15%  Similarity=0.172  Sum_probs=102.8

Q ss_pred             ccccCCcEEEEECC--CChHHHHHHHHHHHCCCcEEEEEcCh-----------hhHH-----------HHHHHHHHhcCC
Q 028656           48 NLRKYGSWALVTGP--TDGIGKSFAFQLAKTGLNLVLVGRNP-----------DKLK-----------DVSDSIQAKYAK  103 (206)
Q Consensus        48 ~~~~~~k~vlItGa--s~giG~~~a~~l~~~g~~V~~~~r~~-----------~~~~-----------~~~~~~~~~~~~  103 (206)
                      ++++++|+++||||  ++|||+++|++|+++|++|++++|++           ++++           ++.+++++.+..
T Consensus         4 ~~~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (319)
T 2ptg_A            4 PVDLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVD   83 (319)
T ss_dssp             CCCCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC-------------------------------
T ss_pred             ccccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccc
Confidence            34577999999999  89999999999999999999998753           2222           222333322110


Q ss_pred             ---ceEEEEEEe----------cCC----------CchHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHH
Q 028656          104 ---TQIKSVVVD----------FSG----------DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKN  160 (206)
Q Consensus       104 ---~~~~~~~~d----------~~~----------~~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~  160 (206)
                         .....+++|          +++          ++++.++++.+.+++  +|++|||||+......++.+.+.++|++
T Consensus        84 ~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~--iD~lVnnAg~~~~~~~~~~~~~~~~~~~  161 (319)
T 2ptg_A           84 LVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQ--IDILVHSLANGPEVTKPLLQTSRKGYLA  161 (319)
T ss_dssp             -CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSC--EEEEEEEEECCSSSSSCGGGCCHHHHHH
T ss_pred             ccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCC--CCEEEECCccCCCCCCccccCCHHHHHH
Confidence               123332222          222          456777888888885  6699999997642234588999999999


Q ss_pred             HHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          161 LIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       161 ~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++++|+.|++.++++++|+|++  .|+ ||++||.++..+.|.
T Consensus       162 ~~~vN~~g~~~l~~~~~~~m~~--~g~-Iv~isS~~~~~~~~~  201 (319)
T 2ptg_A          162 AVSSSSYSFVSLLQHFLPLMKE--GGS-ALALSYIASEKVIPG  201 (319)
T ss_dssp             HHHHHTHHHHHHHHHHGGGEEE--EEE-EEEEEECC-------
T ss_pred             HHhHhhHHHHHHHHHHHHHHhc--Cce-EEEEeccccccccCc
Confidence            9999999999999999999864  266 999999999887764

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=99.89  E-value=2.9e-23  Score=166.65  Aligned_cols=151  Identities=14%  Similarity=0.133  Sum_probs=111.1

Q ss_pred             ccccCCcEEEEECCC--ChHHHHHHHHHHHCCCcEEEEEcChhh-----------HHHHHHHHHHhcCCceEEEEEEec-
Q 028656           48 NLRKYGSWALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNPDK-----------LKDVSDSIQAKYAKTQIKSVVVDF-  113 (206)
Q Consensus        48 ~~~~~~k~vlItGas--~giG~~~a~~l~~~g~~V~~~~r~~~~-----------~~~~~~~~~~~~~~~~~~~~~~d~-  113 (206)
                      ++++++|+++||||+  +|||+++|++|+++|++|++++|+++.           ++++ +++.............+|+ 
T Consensus         3 ~~~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   81 (297)
T 1d7o_A            3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQS-RVLPDGSLMEIKKVYPLDAV   81 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGG-GBCTTSSBCCEEEEEEECTT
T ss_pred             ccccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhh-hhhcccccccccccccccee
Confidence            355789999999999  999999999999999999999986421           1111 1111000001123344442 


Q ss_pred             -------C--------------CCchHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHH
Q 028656          114 -------S--------------GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV  172 (206)
Q Consensus       114 -------~--------------~~~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~  172 (206)
                             +              +++++.++++.+.+++  +|++|||||+......++.+.+.++|++++++|+.|++.+
T Consensus        82 ~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~--iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l  159 (297)
T 1d7o_A           82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGS--IDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSL  159 (297)
T ss_dssp             CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSC--EEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHH
T ss_pred             ccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCC--CCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHH
Confidence                   2              2456777888888885  6699999997642234578899999999999999999999


Q ss_pred             HHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          173 TQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       173 ~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++++|.|++  .|+ ||++||.++..+.|..
T Consensus       160 ~~~~~~~m~~--~g~-iv~isS~~~~~~~~~~  188 (297)
T 1d7o_A          160 LSHFLPIMNP--GGA-SISLTYIASERIIPGY  188 (297)
T ss_dssp             HHHHGGGEEE--EEE-EEEEECGGGTSCCTTC
T ss_pred             HHHHHHHhcc--Cce-EEEEeccccccCCCCc
Confidence            9999999864  356 9999999998877643

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=99.89  E-value=1.3e-22  Score=174.61  Aligned_cols=147  Identities=12%  Similarity=0.131  Sum_probs=118.3

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCc-EEEE-EcC-------------hhhHHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLN-LVLV-GRN-------------PDKLKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~-V~~~-~r~-------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      ..+++++||||++|||+++|++|+++|++ |+++ +|+             .+.++++.+++++.  +.++.++.||++|
T Consensus       249 ~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dvtd  326 (525)
T 3qp9_A          249 QADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADL--GATATVVTCDLTD  326 (525)
T ss_dssp             CTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHH--TCEEEEEECCTTS
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhc--CCEEEEEECCCCC
Confidence            36899999999999999999999999997 7777 888             35566777777764  5688999999998


Q ss_pred             CchHHHHHHHHHhcCC-CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEec
Q 028656          116 DLDEGVERIKEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIG  193 (206)
Q Consensus       116 ~~~~~~~~~~~~~~~~-~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~is  193 (206)
                      .  +.++.+.+..... ++|++|||||+...  +++.+.+.+++++++++|+.|++++.+.+.|.+++++ .++ ||++|
T Consensus       327 ~--~~v~~~~~~i~~~g~id~vVh~AGv~~~--~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~-iV~~S  401 (525)
T 3qp9_A          327 A--EAAARLLAGVSDAHPLSAVLHLPPTVDS--EPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPV-LVLFS  401 (525)
T ss_dssp             H--HHHHHHHHTSCTTSCEEEEEECCCCCCC--CCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCE-EEEEE
T ss_pred             H--HHHHHHHHHHHhcCCCcEEEECCcCCCC--CchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCE-EEEEC
Confidence            6  4455555443221 57799999999876  4588999999999999999999999999999987766 566 99999


Q ss_pred             cccccccccCC
Q 028656          194 KAELMCSVRFH  204 (206)
Q Consensus       194 S~~~~~~~~~~  204 (206)
                      |.++..+.|++
T Consensus       402 S~a~~~g~~g~  412 (525)
T 3qp9_A          402 SVAAIWGGAGQ  412 (525)
T ss_dssp             EGGGTTCCTTC
T ss_pred             CHHHcCCCCCC
Confidence            99999998865

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=99.89  E-value=4.6e-23  Score=166.91  Aligned_cols=152  Identities=16%  Similarity=0.124  Sum_probs=110.9

Q ss_pred             ccccCCcEEEEECC--CChHHHHHHHHHHHCCCcEEEEEcChhh------HH-HHHHHHHHhcCC-----ceEEEEEE--
Q 028656           48 NLRKYGSWALVTGP--TDGIGKSFAFQLAKTGLNLVLVGRNPDK------LK-DVSDSIQAKYAK-----TQIKSVVV--  111 (206)
Q Consensus        48 ~~~~~~k~vlItGa--s~giG~~~a~~l~~~g~~V~~~~r~~~~------~~-~~~~~~~~~~~~-----~~~~~~~~--  111 (206)
                      +++++||+++||||  ++|||+++|++|+++|++|++++|++..      .+ +..+++.+...+     .....+++  
T Consensus         4 ~~~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (315)
T 2o2s_A            4 PIDLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAF   83 (315)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTC
T ss_pred             cccCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccc
Confidence            34578999999999  8999999999999999999999986410      00 001111111011     12333222  


Q ss_pred             --------ecCC----------CchHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHH
Q 028656          112 --------DFSG----------DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT  173 (206)
Q Consensus       112 --------d~~~----------~~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~  173 (206)
                              |+++          ++++.++++.+.+++  +|++|||||+......++.+.+.++|++++++|+.|++.++
T Consensus        84 ~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~--iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~  161 (315)
T 2o2s_A           84 DKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGN--IDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLL  161 (315)
T ss_dssp             SSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCS--EEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHH
T ss_pred             cccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCC--CCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHH
Confidence                    2222          446777888888885  66999999986422245788999999999999999999999


Q ss_pred             HHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          174 QAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       174 ~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++|.|++  .|+ ||++||.++..+.|..
T Consensus       162 ~~~~~~m~~--~g~-Iv~isS~~~~~~~~~~  189 (315)
T 2o2s_A          162 QHFGPIMNE--GGS-AVTLSYLAAERVVPGY  189 (315)
T ss_dssp             HHHSTTEEE--EEE-EEEEEEGGGTSCCTTC
T ss_pred             HHHHHHHhc--CCE-EEEEecccccccCCCc
Confidence            999999864  266 9999999998877743

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=99.89  E-value=1.1e-22  Score=160.69  Aligned_cols=139  Identities=22%  Similarity=0.295  Sum_probs=115.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHH-CCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAK-TGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      ++|+++||||++|||++++++|++ +|++|++++|+.++.++..+++...  +.++.++.+|+++.  +++.++++.+.+
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE--GLSPRFHQLDIDDLQSIRALRDFLRKEY   80 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT--TCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc--CCeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence            589999999999999999999999 9999999999999888888888764  45677889999974  355666777777


Q ss_pred             cCCCccEEEEeccccCCcccccccCC-HHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVD-QVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~-~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      ++  +|++|||||+....   ..+.+ .+++++++++|+.|++.++++++|.|.+  .++ ||++||..+..+
T Consensus        81 g~--id~li~~Ag~~~~~---~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~-iv~~sS~~~~~~  145 (276)
T 1wma_A           81 GG--LDVLVNNAGIAFKV---ADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKP--QGR-VVNVSSIMSVRA  145 (276)
T ss_dssp             SS--EEEEEECCCCCCCT---TCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEE-EEEECCHHHHHH
T ss_pred             CC--CCEEEECCcccccC---CCccccHHHHHhhhheeeeeHHHHHHHHHHhhCC--CCE-EEEECChhhhcc
Confidence            74  66999999987542   22334 5889999999999999999999998854  356 999999888754

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=99.89  E-value=4e-23  Score=162.14  Aligned_cols=138  Identities=14%  Similarity=0.100  Sum_probs=107.6

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      +..+..+|+++||||++|||+++|++|+++|++|++++|+.++.++              ..+.+|++|.  +++.++.+
T Consensus        16 ~~~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~--------------~~~~~d~~d~~~v~~~~~~~   81 (251)
T 3orf_A           16 PRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNAD--------------HSFTIKDSGEEEIKSVIEKI   81 (251)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSS--------------EEEECSCSSHHHHHHHHHHH
T ss_pred             ccccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc--------------cceEEEeCCHHHHHHHHHHH
Confidence            3445668999999999999999999999999999999999865321              2467788764  24445555


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+.++  ++|++|||||+.... .++.+.+.+++++.+++|+.|++.++++++|.|++  .|+ ||++||..+..+.|..
T Consensus        82 ~~~~g--~iD~li~~Ag~~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~-iv~isS~~~~~~~~~~  155 (251)
T 3orf_A           82 NSKSI--KVDTFVCAAGGWSGG-NASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQ--GGL-FVLTGASAALNRTSGM  155 (251)
T ss_dssp             HTTTC--CEEEEEECCCCCCCB-CTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--EEE-EEEECCGGGGSCCTTB
T ss_pred             HHHcC--CCCEEEECCccCCCC-CcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhcc--CCE-EEEEechhhccCCCCC
Confidence            55555  477999999987653 23667889999999999999999999999998854  356 9999999999887754

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=99.89  E-value=1.6e-22  Score=166.69  Aligned_cols=149  Identities=15%  Similarity=0.053  Sum_probs=116.4

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHH-CCCcEEEEEcChhhHH------------HHHHHHHHhcCCceEEEEEEecCC
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAK-TGLNLVLVGRNPDKLK------------DVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~-~g~~V~~~~r~~~~~~------------~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      ....+|+++||||++|||+++|+.|++ .|++|++++|+.+..+            ...+++++.  +.+...+.+|+++
T Consensus        43 ~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~--G~~a~~i~~Dvtd  120 (405)
T 3zu3_A           43 IANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQK--GLYAKSINGDAFS  120 (405)
T ss_dssp             CTTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTS
T ss_pred             cCCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhc--CCceEEEECCCCC
Confidence            445799999999999999999999999 9999999998765422            233344443  5567889999997


Q ss_pred             C--chHHHHHHHHHhcCCCccEEEEeccccCC-----------ccccc---------------------ccCCHHHHHHH
Q 028656          116 D--LDEGVERIKEAIEGLDVGVLINNVGISYP-----------YARFF---------------------HEVDQVLLKNL  161 (206)
Q Consensus       116 ~--~~~~~~~~~~~~~~~~id~lvnnAg~~~~-----------~~~~~---------------------~~~~~~~~~~~  161 (206)
                      .  +++.++.+.+.+|+  +|++|||||+...           ..+|+                     ++.+.|+|+++
T Consensus       121 ~~~v~~~v~~i~~~~G~--IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~  198 (405)
T 3zu3_A          121 DEIKQLTIDAIKQDLGQ--VDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDST  198 (405)
T ss_dssp             HHHHHHHHHHHHHHTSC--EEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC--CCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHH
Confidence            5  36777888888885  5699999998511           12334                     77899999999


Q ss_pred             HhhhhhHHH-HHHHHHhhh-hHhCCCCceEEEeccccccccccC
Q 028656          162 IKVNVEGTT-KVTQAVLPG-MLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       162 ~~~N~~g~~-~~~~~~~~~-~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +++|..+.+ .+++++.+. |++ +.|+ ||++||..+..+.|.
T Consensus       199 v~Vn~~~~~~~~~~~~~~~~m~~-~gG~-IVniSSi~~~~~~p~  240 (405)
T 3zu3_A          199 VAVMGGEDWQMWIDALLDAGVLA-EGAQ-TTAFTYLGEKITHDI  240 (405)
T ss_dssp             HHHHSSHHHHHHHHHHHHHTCEE-EEEE-EEEEECCCCGGGTTT
T ss_pred             HHhhchhHHHHHHHHHHHHhhhh-CCcE-EEEEeCchhhCcCCC
Confidence            999999998 778887754 443 3455 999999999988874

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=99.88  E-value=1.1e-22  Score=168.87  Aligned_cols=152  Identities=13%  Similarity=0.005  Sum_probs=116.7

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHH-CCCcEEEEEcChhhHH------------HHHHHHHHhcCCceEEEEEEec
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAK-TGLNLVLVGRNPDKLK------------DVSDSIQAKYAKTQIKSVVVDF  113 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~-~g~~V~~~~r~~~~~~------------~~~~~~~~~~~~~~~~~~~~d~  113 (206)
                      .++...+|+++||||++|||+++|+.|++ .|++|++++|+.+..+            .+.+++++.  +.+...+.+|+
T Consensus        55 ~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~--G~~a~~i~~Dv  132 (422)
T 3s8m_A           55 GVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAA--GLYSKSINGDA  132 (422)
T ss_dssp             CCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHT--TCCEEEEESCT
T ss_pred             cccccCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhc--CCcEEEEEecC
Confidence            34545699999999999999999999999 9999999999875433            233445443  56778899999


Q ss_pred             CCC--chHHHHHHHHHh-cCCCccEEEEeccccC-----------Cccccc---------------------ccCCHHHH
Q 028656          114 SGD--LDEGVERIKEAI-EGLDVGVLINNVGISY-----------PYARFF---------------------HEVDQVLL  158 (206)
Q Consensus       114 ~~~--~~~~~~~~~~~~-~~~~id~lvnnAg~~~-----------~~~~~~---------------------~~~~~~~~  158 (206)
                      ++.  +++.++.+.+.+ |+  +|++|||||+..           ...+++                     ++.+.++|
T Consensus       133 td~~~v~~~v~~i~~~~~G~--IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~  210 (422)
T 3s8m_A          133 FSDAARAQVIELIKTEMGGQ--VDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEI  210 (422)
T ss_dssp             TSHHHHHHHHHHHHHHSCSC--EEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCC--CCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHH
Confidence            985  367778888888 75  669999999731           011233                     36799999


Q ss_pred             HHHHhhhhhHHH-HHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          159 KNLIKVNVEGTT-KVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       159 ~~~~~~N~~g~~-~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++.+++|..+.+ .+++++.+.++.++.|+ ||++||.++..+.|.
T Consensus       211 ~~~v~Vn~~~~~~~~~~a~~~~~m~~~gG~-IVniSSi~g~~~~p~  255 (422)
T 3s8m_A          211 EDTITVMGGQDWELWIDALEGAGVLADGAR-SVAFSYIGTEITWPI  255 (422)
T ss_dssp             HHHHHHHSSHHHHHHHHHHHHTTCEEEEEE-EEEEEECCCGGGHHH
T ss_pred             HHHHHhhchhHHHHHHHHHHHHHHhhCCCE-EEEEeCchhhccCCC
Confidence            999999999997 78888776443344455 999999999888763

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=99.87  E-value=1.7e-21  Score=183.88  Aligned_cols=155  Identities=18%  Similarity=0.232  Sum_probs=122.1

Q ss_pred             ccccCCcEEEEECCCCh-HHHHHHHHHHHCCCcEEEE-EcChhhHHHHHHHHHHhcC--CceEEEEEEecCCC--chHHH
Q 028656           48 NLRKYGSWALVTGPTDG-IGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKYA--KTQIKSVVVDFSGD--LDEGV  121 (206)
Q Consensus        48 ~~~~~~k~vlItGas~g-iG~~~a~~l~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~--~~~~~  121 (206)
                      .++++||+++||||++| ||+++|++|+++|++|+++ +|+.+++++..+++.....  +.++.++.+|++|.  +++.+
T Consensus       670 ~m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv  749 (1887)
T 2uv8_A          670 GVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALI  749 (1887)
T ss_dssp             CBCCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHH
Confidence            34578999999999998 9999999999999999998 5777788777777754322  56788999999985  23444


Q ss_pred             HHHHHH-----hcCCCccEEEEeccccCCcccccccCC--HHHHHHHHhhhhhHHHHHHHHH--hhhhHhCCCCceEEEe
Q 028656          122 ERIKEA-----IEGLDVGVLINNVGISYPYARFFHEVD--QVLLKNLIKVNVEGTTKVTQAV--LPGMLKRKKGLSMLNI  192 (206)
Q Consensus       122 ~~~~~~-----~~~~~id~lvnnAg~~~~~~~~~~~~~--~~~~~~~~~~N~~g~~~~~~~~--~~~~~~~~~g~~iv~i  192 (206)
                      +.+.+.     ++. ++|++|||||+.... .++.+.+  .++|++++++|+.|++.+++.+  +|.|++++.|+ ||++
T Consensus       750 ~~i~~~~~~~G~G~-~LDiLVNNAGi~~~~-~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~-IVnI  826 (1887)
T 2uv8_A          750 EFIYDTEKNGGLGW-DLDAIIPFAAIPEQG-IELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQV-ILPM  826 (1887)
T ss_dssp             HHHHSCTTTTSCCC-CCSEEEECCCCCCCS-BCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEE-EEEE
T ss_pred             HHHHHhccccccCC-CCeEEEECCCcCCCC-CChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCE-EEEE
Confidence            444444     330 466999999987543 1478888  8999999999999999999998  78887665566 9999


Q ss_pred             ccccccccccCCC
Q 028656          193 GKAELMCSVRFHY  205 (206)
Q Consensus       193 sS~~~~~~~~~~y  205 (206)
                      ||..+..+....|
T Consensus       827 SS~ag~~gg~~aY  839 (1887)
T 2uv8_A          827 SPNHGTFGGDGMY  839 (1887)
T ss_dssp             CSCTTCSSCBTTH
T ss_pred             cChHhccCCCchH
Confidence            9999887744444

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=99.86  E-value=5.3e-22  Score=182.68  Aligned_cols=156  Identities=18%  Similarity=0.218  Sum_probs=121.6

Q ss_pred             cccccCCcEEEEECCCCh-HHHHHHHHHHHCCCcEEEE-EcChhhHHHHHHHHHHhc--CCceEEEEEEecCCCc--hHH
Q 028656           47 KNLRKYGSWALVTGPTDG-IGKSFAFQLAKTGLNLVLV-GRNPDKLKDVSDSIQAKY--AKTQIKSVVVDFSGDL--DEG  120 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~g-iG~~~a~~l~~~g~~V~~~-~r~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~--~~~  120 (206)
                      ..++++||+++||||++| ||+++|++|+++|++|+++ +|+.+++++..+++.+..  .+.++..+.+|++|..  ++.
T Consensus       470 ~~msL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaL  549 (1688)
T 2pff_A          470 XXVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEAL  549 (1688)
T ss_dssp             SCCCCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHH
T ss_pred             cccccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHH
Confidence            345678999999999998 9999999999999999998 577777766666664322  1457889999999862  344


Q ss_pred             HHHHHHH-----hcCCCccEEEEeccccCCcccccccCC--HHHHHHHHhhhhhHHHHHHHHH--hhhhHhCCCCceEEE
Q 028656          121 VERIKEA-----IEGLDVGVLINNVGISYPYARFFHEVD--QVLLKNLIKVNVEGTTKVTQAV--LPGMLKRKKGLSMLN  191 (206)
Q Consensus       121 ~~~~~~~-----~~~~~id~lvnnAg~~~~~~~~~~~~~--~~~~~~~~~~N~~g~~~~~~~~--~~~~~~~~~g~~iv~  191 (206)
                      ++.+.+.     ++. ++|++|||||+.... .++.+.+  .++|++++++|+.|++.+++.+  .|.|++++.|+ ||+
T Consensus       550 Ve~I~e~~~~~GfG~-~IDILVNNAGI~~~g-~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGr-IVn  626 (1688)
T 2pff_A          550 IEFIYDTEKNGGLGW-DLDAIIPFAAIPEQG-IELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQV-ILP  626 (1688)
T ss_dssp             HHHHHSCTTSSSCCC-CCCEEECCCCCCCCS-BCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEE-CCC
T ss_pred             HHHHHHhccccccCC-CCeEEEECCCcCCCC-CChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCE-EEE
Confidence            4455444     331 366999999987543 1477888  8999999999999999999999  88887765566 999


Q ss_pred             eccccccccccCCC
Q 028656          192 IGKAELMCSVRFHY  205 (206)
Q Consensus       192 isS~~~~~~~~~~y  205 (206)
                      +||.++..+....|
T Consensus       627 ISSiAG~~Gg~saY  640 (1688)
T 2pff_A          627 MSPNHGTFGGDGMY  640 (1688)
T ss_dssp             CCSCTTTSSCBTTH
T ss_pred             EEChHhccCCchHH
Confidence            99999887744444

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=99.86  E-value=1.9e-21  Score=183.16  Aligned_cols=155  Identities=18%  Similarity=0.204  Sum_probs=120.2

Q ss_pred             ccccCCcEEEEECCCCh-HHHHHHHHHHHCCCcEEEEE-cChhhHHHHHHHHHHhc--CCceEEEEEEecCCC--chHHH
Q 028656           48 NLRKYGSWALVTGPTDG-IGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKY--AKTQIKSVVVDFSGD--LDEGV  121 (206)
Q Consensus        48 ~~~~~~k~vlItGas~g-iG~~~a~~l~~~g~~V~~~~-r~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~--~~~~~  121 (206)
                      .++++||+++||||++| ||+++|++|+++|++|++++ |+.+++++..+++....  .+.++..+.||++|.  +++.+
T Consensus       647 ~m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv  726 (1878)
T 2uv9_A          647 GLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALV  726 (1878)
T ss_dssp             CBCCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHH
Confidence            34578999999999999 99999999999999999995 66777776666664332  256788999999985  23333


Q ss_pred             HHHHHH---hcCCCccEEEEeccccCCcccccccCC--HHHHHHHHhhhhhHHHHHHHH--HhhhhHhCCCCceEEEecc
Q 028656          122 ERIKEA---IEGLDVGVLINNVGISYPYARFFHEVD--QVLLKNLIKVNVEGTTKVTQA--VLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       122 ~~~~~~---~~~~~id~lvnnAg~~~~~~~~~~~~~--~~~~~~~~~~N~~g~~~~~~~--~~~~~~~~~~g~~iv~isS  194 (206)
                      +.+.+.   ++. ++|++|||||+.... .++.+.+  .++|++++++|+.|++.+++.  ++|.|++++.|+ ||++||
T Consensus       727 ~~i~~~~~~~G~-~IDiLVnNAGi~~~~-~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~-IVnISS  803 (1878)
T 2uv9_A          727 NYIYDTKNGLGW-DLDYVVPFAAIPENG-REIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQV-ILPLSP  803 (1878)
T ss_dssp             HHHHCSSSSCCC-CCSEEEECCCCCCTT-CCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEE-CCEECS
T ss_pred             HHHHHhhcccCC-CCcEEEeCcccccCC-CChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCE-EEEEcc
Confidence            444443   441 466999999987543 1478888  899999999999999999987  778887665566 999999


Q ss_pred             ccccccccCCC
Q 028656          195 AELMCSVRFHY  205 (206)
Q Consensus       195 ~~~~~~~~~~y  205 (206)
                      .++..+....|
T Consensus       804 ~ag~~gg~~aY  814 (1878)
T 2uv9_A          804 NHGTFGNDGLY  814 (1878)
T ss_dssp             CSSSSSCCSSH
T ss_pred             hhhccCCchHH
Confidence            99988755444

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.86  E-value=3.4e-21  Score=172.80  Aligned_cols=140  Identities=17%  Similarity=0.270  Sum_probs=119.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHH-HCCC-cEEEEEcC---hhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLA-KTGL-NLVLVGRN---PDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKE  126 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~-~~g~-~V~~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  126 (206)
                      .+|+++||||++|||+++|++|+ ++|+ +|++++|+   .++.++..+++++.  +.++..+.||++|.  +.++.+.+
T Consensus       529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~--G~~v~~~~~Dvsd~--~~v~~~~~  604 (795)
T 3slk_A          529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAY--GAEVSLQACDVADR--ETLAKVLA  604 (795)
T ss_dssp             TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCH--HHHHHHHH
T ss_pred             cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhc--CCcEEEEEeecCCH--HHHHHHHH
Confidence            58999999999999999999999 7999 59999999   45677777888764  67899999999986  55555554


Q ss_pred             HhcC-CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEG-LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~-~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .... .++|++|||||+..+  .++.+.+.|+|++.+++|+.|++++.+++.|.|      . ||++||.++..+.|++
T Consensus       605 ~~~~~~~id~lVnnAGv~~~--~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~l------~-iV~~SS~ag~~g~~g~  674 (795)
T 3slk_A          605 SIPDEHPLTAVVHAAGVLDD--GVSESLTVERLDQVLRPKVDGARNLLELIDPDV------A-LVLFSSVSGVLGSGGQ  674 (795)
T ss_dssp             TSCTTSCEEEEEECCCCCCC--CCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTTS------E-EEEEEETHHHHTCSSC
T ss_pred             HHHHhCCCEEEEECCCcCCC--CchhhCCHHHHHHHHHHHHHHHHHHHHHHhhCC------E-EEEEccHHhcCCCCCC
Confidence            4432 268899999999876  458999999999999999999999999998876      4 9999999999999876

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=99.85  E-value=1.2e-20  Score=160.87  Aligned_cols=141  Identities=15%  Similarity=0.205  Sum_probs=116.7

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh---hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP---DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      +|+++||||++|||+++|++|+++|+ +|++++|+.   +..+++.++++..  +.++.++.||++|.  +.++.+.+..
T Consensus       239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dvtd~--~~v~~~~~~i  314 (496)
T 3mje_A          239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQL--GVRVTIAACDAADR--EALAALLAEL  314 (496)
T ss_dssp             CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCH--HHHHHHHHTC
T ss_pred             CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhc--CCeEEEEEccCCCH--HHHHHHHHHH
Confidence            48999999999999999999999999 789999974   4467777777763  67899999999986  5555555544


Q ss_pred             cC-CCccEEEEecccc-CCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EG-LDVGVLINNVGIS-YPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~-~~id~lvnnAg~~-~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .. .++|++|||||+. ..  .++.+.+.+++++++++|+.|++++.+.+.+.    +.++ ||++||.++..+.|++
T Consensus       315 ~~~g~ld~vVh~AGv~~~~--~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~----~~~~-iV~~SS~a~~~g~~g~  385 (496)
T 3mje_A          315 PEDAPLTAVFHSAGVAHDD--APVADLTLGQLDALMRAKLTAARHLHELTADL----DLDA-FVLFSSGAAVWGSGGQ  385 (496)
T ss_dssp             CTTSCEEEEEECCCCCCSC--CCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTS----CCSE-EEEEEEHHHHTTCTTC
T ss_pred             HHhCCCeEEEECCcccCCC--CCcccCCHHHHHHHHHHHHHHHHHHHHHhhcc----CCCE-EEEEeChHhcCCCCCc
Confidence            32 2588999999997 44  45889999999999999999999999987653    4566 9999999999998865

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.85  E-value=2.1e-21  Score=150.83  Aligned_cols=132  Identities=18%  Similarity=0.228  Sum_probs=104.8

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~  130 (206)
                      +|+++||||++|||++++++|+++|++|++++|+.+ .+             .+..+.+|+++.  .++.++++ +.++ 
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~~-------------~~~~~~~D~~~~~~~~~~~~~~-~~~~-   65 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-GE-------------DLIYVEGDVTREEDVRRAVARA-QEEA-   65 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-SS-------------SSEEEECCTTCHHHHHHHHHHH-HHHS-
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-cc-------------ceEEEeCCCCCHHHHHHHHHHH-HhhC-
Confidence            689999999999999999999999999999999875 11             236788999975  24555555 5565 


Q ss_pred             CCccEEEEeccccCCcccccccCC----HHHHHHHHhhhhhHHHHHHHHHhhhhHhCC---CC--ceEEEeccccccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVD----QVLLKNLIKVNVEGTTKVTQAVLPGMLKRK---KG--LSMLNIGKAELMCSV  201 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~----~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---~g--~~iv~isS~~~~~~~  201 (206)
                       ++|++|||||.....  ++.+.+    .+++++.+++|+.|++.+++++.|.|.+++   .+  ++||++||..+..+.
T Consensus        66 -~~d~li~~ag~~~~~--~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~  142 (242)
T 1uay_A           66 -PLFAVVSAAGVGLAE--KILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ  142 (242)
T ss_dssp             -CEEEEEECCCCCCCC--CSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC
T ss_pred             -CceEEEEcccccCcc--cccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC
Confidence             467999999987543  244444    459999999999999999999999997764   23  139999999988776


Q ss_pred             cC
Q 028656          202 RF  203 (206)
Q Consensus       202 ~~  203 (206)
                      |.
T Consensus       143 ~~  144 (242)
T 1uay_A          143 IG  144 (242)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=99.84  E-value=8.3e-21  Score=143.87  Aligned_cols=122  Identities=14%  Similarity=0.202  Sum_probs=102.5

Q ss_pred             Cc-EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           53 GS-WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        53 ~k-~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      +| +++||||++|||++++++|+ +|++|++++|+.+                   .+.+|+++.  +.++++.+.++  
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-------------------~~~~D~~~~--~~~~~~~~~~~--   57 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-------------------DVTVDITNI--DSIKKMYEQVG--   57 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-------------------SEECCTTCH--HHHHHHHHHHC--
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-------------------ceeeecCCH--HHHHHHHHHhC--
Confidence            44 79999999999999999999 9999999999864                   367899876  55666666665  


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++|++|||||....  .++.+.+.+++++.+++|+.+++.+++++.|.|.+  .++ ||++||..+..+.|.
T Consensus        58 ~~d~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~-iv~~sS~~~~~~~~~  124 (202)
T 3d7l_A           58 KVDAIVSATGSATF--SPLTELTPEKNAVTISSKLGGQINLVLLGIDSLND--KGS-FTLTTGIMMEDPIVQ  124 (202)
T ss_dssp             CEEEEEECCCCCCC--CCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEE--EEE-EEEECCGGGTSCCTT
T ss_pred             CCCEEEECCCCCCC--CChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhcc--CCE-EEEEcchhhcCCCCc
Confidence            47799999998754  34788899999999999999999999999998853  255 999999988877664

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=99.84  E-value=1.4e-20  Score=157.14  Aligned_cols=149  Identities=9%  Similarity=0.046  Sum_probs=114.8

Q ss_pred             cCCcEEEEECCCChHHHH--HHHHHHHCCCcEEEEEcChhh------------HHHHHHHHHHhcCCceEEEEEEecCCC
Q 028656           51 KYGSWALVTGPTDGIGKS--FAFQLAKTGLNLVLVGRNPDK------------LKDVSDSIQAKYAKTQIKSVVVDFSGD  116 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~--~a~~l~~~g~~V~~~~r~~~~------------~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (206)
                      ..||+++||||++|||++  +++.+++.|++|++++|+.+.            .+.+.+.+++  .+.++..+.+|+++.
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~Dvtd~  135 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKK--KGLVAKNFIEDAFSN  135 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHH--TTCCEEEEESCTTCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHH--cCCcEEEEEeeCCCH
Confidence            679999999999999999  999999999999999997643            2344444444  356788899999985


Q ss_pred             --chHHHHHHHHHhcCCCccEEEEeccccCC-----------ccccc---------------------ccCCHHHHHHHH
Q 028656          117 --LDEGVERIKEAIEGLDVGVLINNVGISYP-----------YARFF---------------------HEVDQVLLKNLI  162 (206)
Q Consensus       117 --~~~~~~~~~~~~~~~~id~lvnnAg~~~~-----------~~~~~---------------------~~~~~~~~~~~~  162 (206)
                        +++.++.+.+.+++  +|++|||||....           ..+++                     ++.+.++|++.+
T Consensus       136 ~~v~~~v~~i~~~~G~--IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~  213 (418)
T 4eue_A          136 ETKDKVIKYIKDEFGK--IDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETR  213 (418)
T ss_dssp             HHHHHHHHHHHHTTCC--EEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC--CCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHH
Confidence              35666777777774  6699999997410           11223                     467999999999


Q ss_pred             hhhhhHHH-HHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          163 KVNVEGTT-KVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       163 ~~N~~g~~-~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++|..+.+ .+++++.+.+..++.|+ ||++||..+..+.|.+
T Consensus       214 ~vn~~~~~~~~~~~l~~~~~~~~gg~-IV~iSSi~~~~~~p~~  255 (418)
T 4eue_A          214 KVMGGEDWQEWCEELLYEDCFSDKAT-TIAYSYIGSPRTYKIY  255 (418)
T ss_dssp             HHHSSHHHHHHHHHHHHTTCEEEEEE-EEEEECCCCGGGTTTT
T ss_pred             HHhhHHHHHHHHHHHHHHhhhcCCcE-EEEEeCchhcCCCCcc
Confidence            99999988 77888776554444465 9999999999888743

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=99.83  E-value=9.2e-20  Score=155.55  Aligned_cols=142  Identities=15%  Similarity=0.144  Sum_probs=115.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCc-EEEEEcChh---hHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLN-LVLVGRNPD---KLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~-V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      .+++++||||++|||++++++|+++|++ |++++|+.+   ..+++.++++..  +.++.++.||++|.  +.++.+.+.
T Consensus       225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dv~d~--~~v~~~~~~  300 (486)
T 2fr1_A          225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDR--ESVRELLGG  300 (486)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCH--HHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhc--CCEEEEEEeCCCCH--HHHHHHHHH
Confidence            5799999999999999999999999995 999999875   466677777663  56789999999986  445555444


Q ss_pred             hcCC-CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~-~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .... ++|++|||||+...  .++.+.+.+++++++++|+.|++++.+.+.+    .+.++ ||++||.++..+.+++
T Consensus       301 i~~~g~ld~VIh~AG~~~~--~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~----~~~~~-~V~~SS~a~~~g~~g~  371 (486)
T 2fr1_A          301 IGDDVPLSAVFHAAATLDD--GTVDTLTGERIERASRAKVLGARNLHELTRE----LDLTA-FVLFSSFASAFGAPGL  371 (486)
T ss_dssp             SCTTSCEEEEEECCCCCCC--CCGGGCCHHHHHHHTHHHHHHHHHHHHHHTT----SCCSE-EEEEEEHHHHTCCTTC
T ss_pred             HHhcCCCcEEEECCccCCC--CccccCCHHHHHHHHHHHHHHHHHHHHHhCc----CCCCE-EEEEcChHhcCCCCCC
Confidence            4221 57899999999865  3488899999999999999999999998754    34566 9999999998888754

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=99.83  E-value=1.1e-20  Score=143.64  Aligned_cols=130  Identities=19%  Similarity=0.284  Sum_probs=102.3

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      |+++||||++|||++++++|+++  +|++++|+.+++++..+++.    .   ..+.+|++|.  +.++.+.+.++  ++
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~----~---~~~~~D~~~~--~~~~~~~~~~~--~i   67 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVG----A---RALPADLADE--LEAKALLEEAG--PL   67 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHT----C---EECCCCTTSH--HHHHHHHHHHC--SE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhcc----C---cEEEeeCCCH--HHHHHHHHhcC--CC
Confidence            57999999999999999999998  99999999888777665542    2   6788999976  44555554455  46


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      |++|||||....  .++.+.+.+++++.+++|+.|++.+++++    ++++.++ ||++||..+..+.+.
T Consensus        68 d~vi~~ag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~-iv~~sS~~~~~~~~~  130 (207)
T 2yut_A           68 DLLVHAVGKAGR--ASVREAGRDLVEEMLAAHLLTAAFVLKHA----RFQKGAR-AVFFGAYPRYVQVPG  130 (207)
T ss_dssp             EEEEECCCCCCC--BCSCC---CHHHHHHHHHHHHHHHHHHHC----CEEEEEE-EEEECCCHHHHSSTT
T ss_pred             CEEEECCCcCCC--CChhhCCHHHHHHHHHHHhHHHHHHHHHH----HhcCCcE-EEEEcChhhccCCCC
Confidence            799999998754  34778899999999999999999999998    2334456 999999988877654

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=99.82  E-value=6.8e-21  Score=149.48  Aligned_cols=116  Identities=18%  Similarity=0.247  Sum_probs=93.3

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh-cCCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI-EGLD  132 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~  132 (206)
                      |+++||||++|||++++++|+++|++|++++|+.+++++               .+.+|+++.  +.++.+.+.+ +  +
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~---------------~~~~Dl~~~--~~v~~~~~~~~~--~   62 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA---------------DLSTAEGRK--QAIADVLAKCSK--G   62 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---------------CTTSHHHHH--HHHHHHHTTCTT--C
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc---------------ccccCCCCH--HHHHHHHHHhCC--C
Confidence            689999999999999999999999999999998754321               044566654  4455555555 4  4


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      +|++|||||+....         +.+++++++|+.|++.++++++|.|++++.++ ||++||..+.
T Consensus        63 id~lv~~Ag~~~~~---------~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~-iv~isS~~~~  118 (257)
T 1fjh_A           63 MDGLVLCAGLGPQT---------KVLGNVVSVNYFGATELMDAFLPALKKGHQPA-AVVISSVASA  118 (257)
T ss_dssp             CSEEEECCCCCTTC---------SSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCE-EEEECCGGGG
T ss_pred             CCEEEECCCCCCCc---------ccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcE-EEEECChhhh
Confidence            67999999976421         12789999999999999999999998877777 9999999887

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=99.82  E-value=5e-19  Score=151.74  Aligned_cols=140  Identities=14%  Similarity=0.172  Sum_probs=114.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChh---hHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPD---KLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      .+++++||||++|||++++++|+++|+ +|++++|+.+   ..+++.+++..  .+.++.++.||++|.  +.++.+.+.
T Consensus       258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~--~g~~v~~~~~Dvtd~--~~v~~~~~~  333 (511)
T 2z5l_A          258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRG--HGCEVVHAACDVAER--DALAALVTA  333 (511)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHT--TTCEEEEEECCSSCH--HHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHh--cCCEEEEEEeCCCCH--HHHHHHHhc
Confidence            579999999999999999999999999 5999999874   46667777765  356789999999986  555555554


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                       +  ++|++|||||+...  .++.+.+.+++++++++|+.|++++.+.+.+.   .+.++ ||++||.++..+.+++
T Consensus       334 -~--~ld~VVh~AGv~~~--~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~---~~~~~-~V~~SS~a~~~g~~g~  401 (511)
T 2z5l_A          334 -Y--PPNAVFHTAGILDD--AVIDTLSPESFETVRGAKVCGAELLHQLTADI---KGLDA-FVLFSSVTGTWGNAGQ  401 (511)
T ss_dssp             -S--CCSEEEECCCCCCC--BCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSC---TTCCC-EEEEEEGGGTTCCTTB
T ss_pred             -C--CCcEEEECCcccCC--cccccCCHHHHHHHHHHHHHHHHHHHHHHhhc---cCCCE-EEEEeCHHhcCCCCCC
Confidence             3  46699999999865  34788999999999999999999999886542   14566 9999999998887754

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.78  E-value=3.6e-19  Score=174.47  Aligned_cols=143  Identities=13%  Similarity=0.084  Sum_probs=103.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCc-EEEEEcChhhH---HHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLN-LVLVGRNPDKL---KDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIK  125 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~-V~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~  125 (206)
                      .+|+++||||++|||+++|++|+++|++ |++++|+.++.   ++..++++.  .+.++..+.||+++.  +++.++.+.
T Consensus      1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~--~g~~v~~~~~Dvsd~~~v~~~~~~~~ 1960 (2512)
T 2vz8_A         1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRR--QGVQVLVSTSNASSLDGARSLITEAT 1960 (2512)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHH--TTCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHh--CCCEEEEEecCCCCHHHHHHHHHHHH
Confidence            6899999999999999999999999997 88899986554   344455544  356788999999985  244555554


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                       .++  ++|++|||||+...  .++.+.+.|+|++.+++|+.|++++.+++.|.|.+.  |. ||++||.++..+.|++
T Consensus      1961 -~~g--~id~lVnnAgv~~~--~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~--g~-iV~iSS~ag~~g~~g~ 2031 (2512)
T 2vz8_A         1961 -QLG--PVGGVFNLAMVLRD--AVLENQTPEFFQDVSKPKYSGTANLDRVTREACPEL--DY-FVIFSSVSCGRGNAGQ 2031 (2512)
T ss_dssp             -HHS--CEEEEEECCCC------------------CTTTTHHHHHHHHHHHHHHCTTC--CE-EEEECCHHHHTTCTTC
T ss_pred             -hcC--CCcEEEECCCcCCC--CchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CE-EEEecchhhcCCCCCc
Confidence             355  47799999998765  458899999999999999999999999999877433  66 9999999999988865

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=99.76  E-value=2.2e-18  Score=136.15  Aligned_cols=115  Identities=17%  Similarity=0.201  Sum_probs=91.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      ++|+++||||+||||++++++|+++|++|++++|+..+.+           ...+..+.+|++|.  +.++.   .+.+ 
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~-----------~~~~~~~~~Dl~d~--~~~~~---~~~~-   64 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA-----------GPNEECVQCDLADA--NAVNA---MVAG-   64 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC-----------CTTEEEEECCTTCH--HHHHH---HHTT-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc-----------CCCCEEEEcCCCCH--HHHHH---HHcC-
Confidence            4689999999999999999999999999999999875532           34578899999976  33333   3344 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                       +|++|||||...          .+++++++++|+.|++++++++.+    .+.++ ||++||..++.
T Consensus        65 -~D~vi~~Ag~~~----------~~~~~~~~~~N~~g~~~l~~a~~~----~~~~~-iv~~SS~~~~g  116 (267)
T 3rft_A           65 -CDGIVHLGGISV----------EKPFEQILQGNIIGLYNLYEAARA----HGQPR-IVFASSNHTIG  116 (267)
T ss_dssp             -CSEEEECCSCCS----------CCCHHHHHHHHTHHHHHHHHHHHH----TTCCE-EEEEEEGGGGT
T ss_pred             -CCEEEECCCCcC----------cCCHHHHHHHHHHHHHHHHHHHHH----cCCCE-EEEEcchHHhC
Confidence             569999999742          123688999999999999999843    45566 99999988774

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=99.76  E-value=1e-18  Score=136.47  Aligned_cols=120  Identities=15%  Similarity=0.219  Sum_probs=93.8

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      |+++||||+||||++++++|+++|++|++++|+.++.+.               .+.+|+++.  +.++.+.+.+.+ ++
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------------~~~~D~~~~--~~~~~~~~~~~~-~~   63 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA---------------DLSTPGGRE--TAVAAVLDRCGG-VL   63 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---------------CTTSHHHHH--HHHHHHHHHHTT-CC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc---------------cccCCcccH--HHHHHHHHHcCC-Cc
Confidence            579999999999999999999999999999998754221               134566554  445555555522 46


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      |++|||||.....         +++++.+++|+.|++.+++++.|.|.+++.++ ||++||..+..+.
T Consensus        64 d~vi~~Ag~~~~~---------~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~-iv~~sS~~~~~~~  121 (255)
T 2dkn_A           64 DGLVCCAGVGVTA---------ANSGLVVAVNYFGVSALLDGLAEALSRGQQPA-AVIVGSIAATQPG  121 (255)
T ss_dssp             SEEEECCCCCTTS---------SCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCE-EEEECCGGGGSTT
T ss_pred             cEEEECCCCCCcc---------hhHHHHHHHHhHHHHHHHHHHHHHhhhcCCce-EEEEecccccccc
Confidence            6999999976421         22688999999999999999999998776677 9999999887654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=99.75  E-value=4.9e-18  Score=131.57  Aligned_cols=121  Identities=17%  Similarity=0.213  Sum_probs=91.7

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceE-EEEEEecCCCchHHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQI-KSVVVDFSGDLDEGVERIKE  126 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~  126 (206)
                      ..++++++++||||+|+||++++++|+++|++|++++|+.++.+++.+        ..+ ..+.+|+++.       +.+
T Consensus        16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~~~~~~~~Dl~~~-------~~~   80 (236)
T 3e8x_A           16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RGASDIVVANLEED-------FSH   80 (236)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TTCSEEEECCTTSC-------CGG
T ss_pred             ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CCCceEEEcccHHH-------HHH
Confidence            345789999999999999999999999999999999999988765432        135 6788898822       233


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      .+++  +|++|||||....          +++++.+++|+.++..+++++.+    .+.++ ||++||..+..+
T Consensus        81 ~~~~--~D~vi~~ag~~~~----------~~~~~~~~~n~~~~~~l~~a~~~----~~~~~-iv~~SS~~~~~~  137 (236)
T 3e8x_A           81 AFAS--IDAVVFAAGSGPH----------TGADKTILIDLWGAIKTIQEAEK----RGIKR-FIMVSSVGTVDP  137 (236)
T ss_dssp             GGTT--CSEEEECCCCCTT----------SCHHHHHHTTTHHHHHHHHHHHH----HTCCE-EEEECCTTCSCG
T ss_pred             HHcC--CCEEEECCCCCCC----------CCccccchhhHHHHHHHHHHHHH----cCCCE-EEEEecCCCCCC
Confidence            4454  5699999996532          24688999999999999999743    45566 999999776655

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=99.72  E-value=8.7e-18  Score=165.11  Aligned_cols=146  Identities=16%  Similarity=0.137  Sum_probs=104.2

Q ss_pred             ccCCcEEEEECCCCh-HHHHHHHHHHHCCCcEEEEEcChhh-----HHHHHHHHHHhcCCceEEEEEEecCCC--chHHH
Q 028656           50 RKYGSWALVTGPTDG-IGKSFAFQLAKTGLNLVLVGRNPDK-----LKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGV  121 (206)
Q Consensus        50 ~~~~k~vlItGas~g-iG~~~a~~l~~~g~~V~~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~  121 (206)
                      .++||+++||||++| ||+++|+.|++.|++|++++|+.++     ++++.+++..  .+.++..+.+|+++.  +++.+
T Consensus      2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~--~G~~~~~v~~Dvtd~~~v~~lv 2210 (3089)
T 3zen_D         2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHAR--FDATLWVVPANMASYSDIDKLV 2210 (3089)
T ss_dssp             CCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCC--TTCEEEEEECCTTCHHHHHHHH
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhh--cCCeEEEEEecCCCHHHHHHHH
Confidence            377999999999999 9999999999999999999998766     4555555433  256788899999985  24445


Q ss_pred             HHHHH----HhcCCCccEEEEeccccC---CcccccccCCHHHHHH----HHhhhhhHHHHHHHHHhhhhHhCCCCc---
Q 028656          122 ERIKE----AIEGLDVGVLINNVGISY---PYARFFHEVDQVLLKN----LIKVNVEGTTKVTQAVLPGMLKRKKGL---  187 (206)
Q Consensus       122 ~~~~~----~~~~~~id~lvnnAg~~~---~~~~~~~~~~~~~~~~----~~~~N~~g~~~~~~~~~~~~~~~~~g~---  187 (206)
                      +.+.+    .+|+  +|++|||||+..   +...+..+.+.++|++    .+++|+.+++.+++.+.|.|.+++.+.   
T Consensus      2211 ~~i~~~~~~~fG~--IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ 2288 (3089)
T 3zen_D         2211 EWVGTEQTESLGP--QSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLH 2288 (3089)
T ss_dssp             HHHTSCCEEEESS--SEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred             HHHHhhhhhhcCC--CCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeE
Confidence            55555    5554  669999999821   1111233334444444    499999999999999999998776432   


Q ss_pred             eEEEeccccccc
Q 028656          188 SMLNIGKAELMC  199 (206)
Q Consensus       188 ~iv~isS~~~~~  199 (206)
                      .+++.|+..+..
T Consensus      2289 ii~~~ss~~g~~ 2300 (3089)
T 3zen_D         2289 VVLPGSPNRGMF 2300 (3089)
T ss_dssp             EEEEECSSTTSC
T ss_pred             EEEECCcccccC
Confidence            244444444433

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.72  E-value=2.7e-17  Score=133.76  Aligned_cols=131  Identities=15%  Similarity=0.124  Sum_probs=98.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .+++++||||+|+||++++++|+++|++|++++|+.++.++..+++.... +..+.++.+|++|.  +.++++.+.   .
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~--~~~~~~~~~---~   77 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKIT-GKTPAFHETDVSDE--RALARIFDA---H   77 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHH-SCCCEEECCCTTCH--HHHHHHHHH---S
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhc-CCCceEEEeecCCH--HHHHHHHhc---c
Confidence            46799999999999999999999999999999998876666555555432 34577889999986  444444443   2


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      ++|++|||||......      ..+..++.+++|+.++..+++++    ++.+.++ ||++||.+.+.
T Consensus        78 ~~d~vih~A~~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~-iv~~SS~~~~g  134 (341)
T 3enk_A           78 PITAAIHFAALKAVGE------SVAKPIEYYRNNLDSLLSLLRVM----RERAVKR-IVFSSSATVYG  134 (341)
T ss_dssp             CCCEEEECCCCCCHHH------HHHCHHHHHHHHHHHHHHHHHHH----HHTTCCE-EEEEEEGGGBC
T ss_pred             CCcEEEECccccccCc------cccChHHHHHHHHHHHHHHHHHH----HhCCCCE-EEEEecceEec
Confidence            4669999999764321      22334677899999999988775    4455566 99999977653

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=99.71  E-value=3.9e-17  Score=132.66  Aligned_cols=129  Identities=17%  Similarity=0.173  Sum_probs=95.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      ++++++||||+|+||++++++|+++|++|++++|+.++.+.  +.+.....+..+.++.+|++|.  +.++++.+..   
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~Dl~d~--~~~~~~~~~~---   74 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS--WRLKELGIENDVKIIHMDLLEF--SNIIRTIEKV---   74 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT--HHHHHTTCTTTEEECCCCTTCH--HHHHHHHHHH---
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc--ccHhhccccCceeEEECCCCCH--HHHHHHHHhc---
Confidence            47899999999999999999999999999999998765321  1222222234577888999875  4444444333   


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC-CceEEEecccccc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK-GLSMLNIGKAELM  198 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~~iv~isS~~~~  198 (206)
                      ++|++|||||....      +.+.+++++.+++|+.|+.++++++.+ +   +. ++ ||++||.+.+
T Consensus        75 ~~d~vih~A~~~~~------~~~~~~~~~~~~~Nv~g~~~l~~a~~~-~---~~~~~-iv~~SS~~vy  131 (345)
T 2z1m_A           75 QPDEVYNLAAQSFV------GVSFEQPILTAEVDAIGVLRILEALRT-V---KPDTK-FYQASTSEMF  131 (345)
T ss_dssp             CCSEEEECCCCCCH------HHHTTSHHHHHHHHTHHHHHHHHHHHH-H---CTTCE-EEEEEEGGGG
T ss_pred             CCCEEEECCCCcch------hhhhhCHHHHHHHHHHHHHHHHHHHHH-h---CCCce-EEEEechhhc
Confidence            46799999997532      223455788999999999999999875 2   32 55 9999998654

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=99.70  E-value=5.7e-17  Score=131.58  Aligned_cols=131  Identities=14%  Similarity=0.128  Sum_probs=95.8

Q ss_pred             CcccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHH
Q 028656           46 AKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIK  125 (206)
Q Consensus        46 ~~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  125 (206)
                      .++.++++++++||||+|+||++++++|+++|++|++++|+.+...+..+++      ..+.++.+|++|.  +.++++.
T Consensus        13 ~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l------~~v~~~~~Dl~d~--~~~~~~~   84 (330)
T 2pzm_A           13 GLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPV------AGLSVIEGSVTDA--GLLERAF   84 (330)
T ss_dssp             -CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSC------TTEEEEECCTTCH--HHHHHHH
T ss_pred             CCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhcc------CCceEEEeeCCCH--HHHHHHH
Confidence            3445578999999999999999999999999999999999764322111111      3467889999975  4444444


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      +..   ++|++|||||.....       +.++++  +++|+.|+..+++++..    .+.++ ||++||.+++.+.
T Consensus        85 ~~~---~~D~vih~A~~~~~~-------~~~~~~--~~~N~~~~~~l~~a~~~----~~~~~-iV~~SS~~~~~~~  143 (330)
T 2pzm_A           85 DSF---KPTHVVHSAAAYKDP-------DDWAED--AATNVQGSINVAKAASK----AGVKR-LLNFQTALCYGRP  143 (330)
T ss_dssp             HHH---CCSEEEECCCCCSCT-------TCHHHH--HHHHTHHHHHHHHHHHH----HTCSE-EEEEEEGGGGCSC
T ss_pred             hhc---CCCEEEECCccCCCc-------cccChh--HHHHHHHHHHHHHHHHH----cCCCE-EEEecCHHHhCCC
Confidence            433   466999999976421       334455  99999999999999864    34566 9999998776543

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=99.70  E-value=2.4e-16  Score=128.91  Aligned_cols=128  Identities=20%  Similarity=0.278  Sum_probs=99.5

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHC-CC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKT-GL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~-g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      +++|+++||||+|+||++++++|+++ |+ +|++++|++++.++..+++.    ...+.++.+|++|.     +.+.+.+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~v~~~~~Dl~d~-----~~l~~~~   89 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN----DPRMRFFIGDVRDL-----ERLNYAL   89 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC----CTTEEEEECCTTCH-----HHHHHHT
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc----CCCEEEEECCCCCH-----HHHHHHH
Confidence            67899999999999999999999999 97 99999999887776665552    35678899999986     3344444


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      .+  +|++|||||.....   .   ..++..+.+++|+.|+.++++++.+.    +.++ +|++||..+..|
T Consensus        90 ~~--~D~Vih~Aa~~~~~---~---~~~~~~~~~~~Nv~gt~~l~~aa~~~----~v~~-~V~~SS~~~~~p  148 (344)
T 2gn4_A           90 EG--VDICIHAAALKHVP---I---AEYNPLECIKTNIMGASNVINACLKN----AISQ-VIALSTDKAANP  148 (344)
T ss_dssp             TT--CSEEEECCCCCCHH---H---HHHSHHHHHHHHHHHHHHHHHHHHHT----TCSE-EEEECCGGGSSC
T ss_pred             hc--CCEEEECCCCCCCC---c---hhcCHHHHHHHHHHHHHHHHHHHHhC----CCCE-EEEecCCccCCC
Confidence            44  56999999976421   1   12234678999999999999998763    4556 999999776544

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=99.69  E-value=1.8e-17  Score=128.57  Aligned_cols=126  Identities=15%  Similarity=0.196  Sum_probs=93.2

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      +++|+++||||+||||++++++|+++|+  +|++++|+.++.++..        ...+..+.+|++|.  +   .+.+.+
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~--------~~~~~~~~~D~~d~--~---~~~~~~   82 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA--------YKNVNQEVVDFEKL--D---DYASAF   82 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG--------GGGCEEEECCGGGG--G---GGGGGG
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc--------cCCceEEecCcCCH--H---HHHHHh
Confidence            4589999999999999999999999999  9999999876543211        12457788999875  2   222233


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFHY  205 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~y  205 (206)
                      .  ++|++|||||....         .+++++.+++|+.++..+++++.    +.+.++ ||++||..+..+.+..|
T Consensus        83 ~--~~d~vi~~ag~~~~---------~~~~~~~~~~n~~~~~~~~~~~~----~~~~~~-iv~~SS~~~~~~~~~~Y  143 (242)
T 2bka_A           83 Q--GHDVGFCCLGTTRG---------KAGAEGFVRVDRDYVLKSAELAK----AGGCKH-FNLLSSKGADKSSNFLY  143 (242)
T ss_dssp             S--SCSEEEECCCCCHH---------HHHHHHHHHHHTHHHHHHHHHHH----HTTCCE-EEEECCTTCCTTCSSHH
T ss_pred             c--CCCEEEECCCcccc---------cCCcccceeeeHHHHHHHHHHHH----HCCCCE-EEEEccCcCCCCCcchH
Confidence            3  36699999996432         12457889999999999888753    445566 99999988776544333

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=99.68  E-value=3.3e-16  Score=127.05  Aligned_cols=127  Identities=17%  Similarity=0.186  Sum_probs=96.4

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEE-EEecCCCchHHHHHHHHHhc
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSV-VVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~  129 (206)
                      .++++++||||+|+||++++++|+++|++|++++|+.++.+++.+.+.... +.++..+ .+|+++.  +.++   +.+.
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~--~~~~---~~~~   82 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQ--GAYD---EVIK   82 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTST--TTTT---TTTT
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcCh--HHHH---HHHc
Confidence            568999999999999999999999999999999999887776666554432 2456677 7899875  2222   2222


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                        ++|++|||||.....         +++++.+++|+.|+..+++++.+.   .+.++ ||++||..++
T Consensus        83 --~~d~vih~A~~~~~~---------~~~~~~~~~n~~g~~~ll~~~~~~---~~~~~-iv~~SS~~~~  136 (342)
T 1y1p_A           83 --GAAGVAHIASVVSFS---------NKYDEVVTPAIGGTLNALRAAAAT---PSVKR-FVLTSSTVSA  136 (342)
T ss_dssp             --TCSEEEECCCCCSCC---------SCHHHHHHHHHHHHHHHHHHHHTC---TTCCE-EEEECCGGGT
T ss_pred             --CCCEEEEeCCCCCCC---------CCHHHHHHHHHHHHHHHHHHHHhC---CCCcE-EEEeccHHHh
Confidence              466999999975421         134678999999999999998652   33456 9999998776

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=99.67  E-value=2.9e-16  Score=129.02  Aligned_cols=135  Identities=21%  Similarity=0.167  Sum_probs=90.7

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHH-HHHHHHHHhc--CCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK-DVSDSIQAKY--AKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~-~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      +|+++||||+|+||++++++|+++|++|++++|+.+... +..+.+....  .+..+.++.+|+++.  +.++++.+.. 
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~--~~~~~~~~~~-   77 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDT--SNLTRILREV-   77 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCH--HHHHHHHHHH-
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCH--HHHHHHHHhc-
Confidence            468999999999999999999999999999999865421 1111111100  124577888999875  4444444433 


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                        ++|++|||||....      +.+.+++++.+++|+.|+..+++++.+...+ +.++ ||++||.+.+.+
T Consensus        78 --~~d~vih~A~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~-iv~~SS~~v~g~  138 (372)
T 1db3_A           78 --QPDEVYNLGAMSHV------AVSFESPEYTADVDAMGTLRLLEAIRFLGLE-KKTR-FYQASTSELYGL  138 (372)
T ss_dssp             --CCSEEEECCCCCTT------TTTTSCHHHHHHHHTHHHHHHHHHHHHTTCT-TTCE-EEEEEEGGGGTT
T ss_pred             --CCCEEEECCcccCc------cccccCHHHHHHHHHHHHHHHHHHHHHhCCC-CCcE-EEEeCChhhhCC
Confidence              46699999997543      1233456788999999999999999775432 2255 999999876543

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=99.67  E-value=1.9e-16  Score=129.60  Aligned_cols=131  Identities=13%  Similarity=0.086  Sum_probs=97.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +++++++||||+|+||++++++|+++|++|++++|+.++.++..+.+.   ....+.++.+|+++.  +.++.+.+..  
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~--~~~~~~~~~~--   79 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR---VADGMQSEIGDIRDQ--NKLLESIREF--   79 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT---TTTTSEEEECCTTCH--HHHHHHHHHH--
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhc---cCCceEEEEccccCH--HHHHHHHHhc--
Confidence            458899999999999999999999999999999998765444433332   134567889999976  4444444433  


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                       ++|++|||||...      .+.+.+++++.+++|+.|+..+++++.+.   .+.++ ||++||...+.
T Consensus        80 -~~d~vih~A~~~~------~~~~~~~~~~~~~~n~~~~~~l~~a~~~~---~~~~~-~v~~SS~~vyg  137 (357)
T 1rkx_A           80 -QPEIVFHMAAQPL------VRLSYSEPVETYSTNVMGTVYLLEAIRHV---GGVKA-VVNITSDKCYD  137 (357)
T ss_dssp             -CCSEEEECCSCCC------HHHHHHCHHHHHHHHTHHHHHHHHHHHHH---CCCCE-EEEECCGGGBC
T ss_pred             -CCCEEEECCCCcc------cccchhCHHHHHHHHHHHHHHHHHHHHHh---CCCCe-EEEecCHHHhC
Confidence             4669999999632      12345567889999999999999998652   22456 99999987543

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=99.66  E-value=7.7e-16  Score=125.20  Aligned_cols=128  Identities=15%  Similarity=0.080  Sum_probs=94.5

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh-hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      ++++||||+|+||++++++|+++|++|++++|+. ...++..+.+..   ..++.++.+|++|.  +.++.+.+..   +
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~---~~~~~~~~~Dl~d~--~~~~~~~~~~---~   73 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNK--NDVTRLITKY---M   73 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCH--HHHHHHHHHH---C
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhcc---CCceEEEEcCCCCH--HHHHHHHhcc---C
Confidence            4799999999999999999999999999999864 333333344432   23567888999975  4444444432   4


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      +|++|||||....      +.+.+++++.+++|+.|+..+++++.+.+.   +++ ||++||.+.+.
T Consensus        74 ~d~vih~A~~~~~------~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~---~~~-iv~~SS~~v~g  130 (347)
T 1orr_A           74 PDSCFHLAGQVAM------TTSIDNPCMDFEINVGGTLNLLEAVRQYNS---NCN-IIYSSTNKVYG  130 (347)
T ss_dssp             CSEEEECCCCCCH------HHHHHCHHHHHHHHHHHHHHHHHHHHHHCT---TCE-EEEEEEGGGGT
T ss_pred             CCEEEECCcccCh------hhhhhCHHHHHHHHHHHHHHHHHHHHHhCC---Cce-EEEeccHHHhC
Confidence            6699999996432      223456788999999999999999987542   246 99999977553

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=99.66  E-value=4.4e-16  Score=128.57  Aligned_cols=132  Identities=17%  Similarity=0.143  Sum_probs=95.5

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh-----HHHHHHHHHHhcCCc-eEEEEEEecCCCchHHHHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK-----LKDVSDSIQAKYAKT-QIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~-----~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      |+++||||+|+||++++++|+++|++|++++|+.++     ++.+.++....  +. .+.++.+|++|.  +.++.+.+.
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~--~~~~~~~~~  104 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNV--NKALMKLHYADLTDA--SSLRRWIDV  104 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC----------CCEEEEECCTTCH--HHHHHHHHH
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccc--cccceEEEECCCCCH--HHHHHHHHh
Confidence            689999999999999999999999999999998653     22222222111  12 577889999975  444444433


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEeccccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAELMC  199 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~~~~  199 (206)
                      .   ++|++||+||....      +.+.+++++.+++|+.|+..+++++.+...+++ .++ ||++||...+.
T Consensus       105 ~---~~d~Vih~A~~~~~------~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~-~v~~SS~~vyg  167 (381)
T 1n7h_A          105 I---KPDEVYNLAAQSHV------AVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVK-YYQAGSSEMFG  167 (381)
T ss_dssp             H---CCSEEEECCSCCCH------HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCE-EEEEEEGGGGT
T ss_pred             c---CCCEEEECCcccCc------cccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccE-EEEeCcHHHhC
Confidence            3   46699999996542      123456788999999999999999998776543 345 99999987654

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=99.65  E-value=6.2e-16  Score=125.99  Aligned_cols=130  Identities=15%  Similarity=0.160  Sum_probs=93.9

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh------HHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK------LKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKE  126 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  126 (206)
                      +++++||||+|+||++++++|+++|++|++++|+...      ..+..+++... .+..+.++.+|+++.  +.++++.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~D~~~~--~~~~~~~~   78 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL-TGRSVEFEEMDILDQ--GALQRLFK   78 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHH-HTCCCEEEECCTTCH--HHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhc-cCCceEEEECCCCCH--HHHHHHHH
Confidence            5789999999999999999999999999999986432      22223333321 134567888999975  44444443


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      ..   ++|++|||||.....      .+.+++++.+++|+.|+..+++++.    +.+.++ ||++||...+.
T Consensus        79 ~~---~~d~vih~A~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~-iv~~SS~~~~g  137 (348)
T 1ek6_A           79 KY---SFMAVIHFAGLKAVG------ESVQKPLDYYRVNLTGTIQLLEIMK----AHGVKN-LVFSSSATVYG  137 (348)
T ss_dssp             HC---CEEEEEECCSCCCHH------HHHHCHHHHHHHHHHHHHHHHHHHH----HTTCCE-EEEEEEGGGGC
T ss_pred             hc---CCCEEEECCCCcCcc------chhhchHHHHHHHHHHHHHHHHHHH----HhCCCE-EEEECcHHHhC
Confidence            32   577999999975421      1334567899999999999998753    345566 99999977653

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=99.65  E-value=9.4e-16  Score=117.53  Aligned_cols=109  Identities=12%  Similarity=0.230  Sum_probs=84.6

Q ss_pred             cEEEEECCCChHHHHHHHHHH-HCCCcEEEEEcChh-hHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLA-KTGLNLVLVGRNPD-KLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~-~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      |+++||||+||||++++++|+ ++|++|++++|+++ +++++.    .  ....+..+.+|++|.  +   .+.+.+.+ 
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~--~~~~~~~~~~D~~d~--~---~~~~~~~~-   73 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----I--DHERVTVIEGSFQNP--G---XLEQAVTN-   73 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----H--TSTTEEEEECCTTCH--H---HHHHHHTT-
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----c--CCCceEEEECCCCCH--H---HHHHHHcC-
Confidence            679999999999999999999 89999999999987 655443    1  245678899999976  3   33334444 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                       +|++|||||..                     |+.     ++.+++.|++.+.++ ||++||..+..+.|
T Consensus        74 -~d~vv~~ag~~---------------------n~~-----~~~~~~~~~~~~~~~-iv~iSs~~~~~~~~  116 (221)
T 3r6d_A           74 -AEVVFVGAMES---------------------GSD-----MASIVKALSRXNIRR-VIGVSMAGLSGEFP  116 (221)
T ss_dssp             -CSEEEESCCCC---------------------HHH-----HHHHHHHHHHTTCCE-EEEEEETTTTSCSC
T ss_pred             -CCEEEEcCCCC---------------------Chh-----HHHHHHHHHhcCCCe-EEEEeeceecCCCC
Confidence             56999999842                     222     778888888877777 99999998877655

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=99.65  E-value=3.3e-16  Score=121.82  Aligned_cols=127  Identities=13%  Similarity=0.034  Sum_probs=91.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHC--CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKT--GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      .+++++||||+|+||++++++|+++  |++|++++|+.++.+++         ...+.++.+|++|.  +   .+.+.+.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~D~~d~--~---~~~~~~~   68 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI---------GGEADVFIGDITDA--D---SINPAFQ   68 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT---------TCCTTEEECCTTSH--H---HHHHHHT
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc---------CCCeeEEEecCCCH--H---HHHHHHc
Confidence            4789999999999999999999999  89999999997665432         22356788999875  3   3333444


Q ss_pred             CCCccEEEEeccccCCccc---c----cccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          130 GLDVGVLINNVGISYPYAR---F----FHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~---~----~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      +  +|++|||||.......   +    ..+...+++++.+++|+.++..+++++.+    .+.++ ||++||..+..
T Consensus        69 ~--~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~-iv~~SS~~~~~  138 (253)
T 1xq6_A           69 G--IDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKV----AGVKH-IVVVGSMGGTN  138 (253)
T ss_dssp             T--CSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHH----HTCSE-EEEEEETTTTC
T ss_pred             C--CCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHH----cCCCE-EEEEcCccCCC
Confidence            4  5699999997642110   0    01222334456789999999999988754    34566 99999987754

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=99.65  E-value=7.5e-16  Score=125.29  Aligned_cols=132  Identities=16%  Similarity=0.190  Sum_probs=99.2

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCC-------CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTG-------LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDE  119 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  119 (206)
                      +++.+++++++||||+|+||++++++|+++|       ++|++++|+.++..+      .  ....+.++.+|++|.  +
T Consensus         8 ~~~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~------~--~~~~~~~~~~Dl~d~--~   77 (342)
T 2hrz_A            8 ENLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA------G--FSGAVDARAADLSAP--G   77 (342)
T ss_dssp             CCSCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT------T--CCSEEEEEECCTTST--T
T ss_pred             CCCCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc------c--cCCceeEEEcCCCCH--H
Confidence            4566789999999999999999999999999       899999998653221      0  245678889999986  3


Q ss_pred             HHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC-CCCceEEEecccccc
Q 028656          120 GVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR-KKGLSMLNIGKAELM  198 (206)
Q Consensus       120 ~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~~iv~isS~~~~  198 (206)
                      .++.+.+  +  ++|++|||||....       .+.+++++.+++|+.|+..+++++.+...+. +.++ ||++||.+++
T Consensus        78 ~~~~~~~--~--~~d~vih~A~~~~~-------~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~-iv~~SS~~~~  145 (342)
T 2hrz_A           78 EAEKLVE--A--RPDVIFHLAAIVSG-------EAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPR-VVFTSSIAVF  145 (342)
T ss_dssp             HHHHHHH--T--CCSEEEECCCCCHH-------HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCE-EEEEEEGGGC
T ss_pred             HHHHHHh--c--CCCEEEECCccCcc-------cccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcE-EEEeCchHhh
Confidence            3333332  2  46699999996531       2345678899999999999999987643222 1355 9999998766


Q ss_pred             cc
Q 028656          199 CS  200 (206)
Q Consensus       199 ~~  200 (206)
                      .+
T Consensus       146 ~~  147 (342)
T 2hrz_A          146 GA  147 (342)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=99.65  E-value=2.9e-16  Score=126.60  Aligned_cols=124  Identities=21%  Similarity=0.201  Sum_probs=91.9

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      ..+.++++||||+|+||++++++|+++|++|++++|+.+. +.    +       .+.++.+|++|.  +.++++.+. +
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~----l-------~~~~~~~Dl~d~--~~~~~~~~~-~   73 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL----P-------NVEMISLDIMDS--QRVKKVISD-I   73 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC----T-------TEEEEECCTTCH--HHHHHHHHH-H
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc----c-------eeeEEECCCCCH--HHHHHHHHh-c
Confidence            3567999999999999999999999999999999998764 21    1       367788999975  444444433 2


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                        ++|++|||||....      +.+.+++++.+++|+.|+..+++++ +.+  .+.++ ||++||.+.+.+
T Consensus        74 --~~d~vih~A~~~~~------~~~~~~~~~~~~~Nv~g~~~l~~a~-~~~--~~~~~-iv~~SS~~v~g~  132 (321)
T 2pk3_A           74 --KPDYIFHLAAKSSV------KDSWLNKKGTFSTNVFGTLHVLDAV-RDS--NLDCR-ILTIGSSEEYGM  132 (321)
T ss_dssp             --CCSEEEECCSCCCH------HHHTTCHHHHHHHHHHHHHHHHHHH-HHH--TCCCE-EEEEEEGGGTBS
T ss_pred             --CCCEEEEcCcccch------hhhhhcHHHHHHHHHHHHHHHHHHH-HHh--CCCCe-EEEEccHHhcCC
Confidence              46699999997542      1223456889999999999999998 544  23456 999999876543

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=99.65  E-value=1e-15  Score=125.16  Aligned_cols=134  Identities=15%  Similarity=0.076  Sum_probs=97.1

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh----hHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD----KLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERI  124 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  124 (206)
                      +++++++++||||+|+||++++++|+++|++|++++|+..    .++++.+++... ....+.++.+|++|.  +.++  
T Consensus        23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~--~~~~--   97 (352)
T 1sb8_A           23 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEK-QWSNFKFIQGDIRNL--DDCN--   97 (352)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHH-HHTTEEEEECCTTSH--HHHH--
T ss_pred             cCccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccc-cCCceEEEECCCCCH--HHHH--
Confidence            3456889999999999999999999999999999999764    233333222111 023577889999875  3333  


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                       +.+.  ++|++||+||.....      .+.+++++.+++|+.++..+++++.+    .+.++ ||++||..++.+.
T Consensus        98 -~~~~--~~d~vih~A~~~~~~------~~~~~~~~~~~~n~~~~~~l~~a~~~----~~~~~-~v~~SS~~~~~~~  160 (352)
T 1sb8_A           98 -NACA--GVDYVLHQAALGSVP------RSINDPITSNATNIDGFLNMLIAARD----AKVQS-FTYAASSSTYGDH  160 (352)
T ss_dssp             -HHHT--TCSEEEECCSCCCHH------HHHHCHHHHHHHHTHHHHHHHHHHHH----TTCSE-EEEEEEGGGGTTC
T ss_pred             -HHhc--CCCEEEECCcccCch------hhhhCHHHHHHHHHHHHHHHHHHHHH----cCCCE-EEEeccHHhcCCC
Confidence             3334  466999999975321      13455788999999999999999865    34456 9999998876544

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=99.65  E-value=9e-16  Score=125.23  Aligned_cols=135  Identities=11%  Similarity=0.030  Sum_probs=99.9

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCC---ceEEEEEEecCCCchHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAK---TQIKSVVVDFSGDLDEGVERIK  125 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~  125 (206)
                      +..++++++||||+|+||++++++|+++|++|++++|+.....+..+.+......   ..+.++.+|+.|.     +.+.
T Consensus        21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-----~~~~   95 (351)
T 3ruf_A           21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDL-----TTCE   95 (351)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCH-----HHHH
T ss_pred             CCCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCH-----HHHH
Confidence            3456899999999999999999999999999999999876544444444332111   4678899999976     3334


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      +.+.  ++|++||+||....      ..+.++..+.+++|+.++..+++++.+    .+.++ +|++||...+...
T Consensus        96 ~~~~--~~d~Vih~A~~~~~------~~~~~~~~~~~~~nv~~~~~ll~a~~~----~~~~~-~v~~SS~~vyg~~  158 (351)
T 3ruf_A           96 QVMK--GVDHVLHQAALGSV------PRSIVDPITTNATNITGFLNILHAAKN----AQVQS-FTYAASSSTYGDH  158 (351)
T ss_dssp             HHTT--TCSEEEECCCCCCH------HHHHHCHHHHHHHHTHHHHHHHHHHHH----TTCSE-EEEEEEGGGGTTC
T ss_pred             HHhc--CCCEEEECCccCCc------chhhhCHHHHHHHHHHHHHHHHHHHHH----cCCCE-EEEEecHHhcCCC
Confidence            4444  46699999996532      223455678899999999999999754    34456 9999998776543

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=99.64  E-value=2.3e-15  Score=124.73  Aligned_cols=131  Identities=17%  Similarity=0.112  Sum_probs=95.5

Q ss_pred             CcEEEEECCCChHHHHHHHHHH-HCCCcEEEEEcChhh---------HHHHHHHHHHhcC---Cce---EEEEEEecCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLA-KTGLNLVLVGRNPDK---------LKDVSDSIQAKYA---KTQ---IKSVVVDFSGD  116 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~-~~g~~V~~~~r~~~~---------~~~~~~~~~~~~~---~~~---~~~~~~d~~~~  116 (206)
                      +++++||||+|+||++++++|+ ++|++|++++|+...         .+.+.+.++....   ...   +.++.+|+++.
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~   81 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence            4589999999999999999999 999999999997654         3444333333211   113   77889999986


Q ss_pred             chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccc
Q 028656          117 LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE  196 (206)
Q Consensus       117 ~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~  196 (206)
                        +.++.+.+.+++  +|++|||||.....      .+.+++++++++|+.|+..+++++.    +.+.++ ||++||.+
T Consensus        82 --~~~~~~~~~~~~--~d~vih~A~~~~~~------~~~~~~~~~~~~Nv~g~~~ll~a~~----~~~~~~-iv~~SS~~  146 (397)
T 1gy8_A           82 --DFLNGVFTRHGP--IDAVVHMCAFLAVG------ESVRDPLKYYDNNVVGILRLLQAML----LHKCDK-IIFSSSAA  146 (397)
T ss_dssp             --HHHHHHHHHSCC--CCEEEECCCCCCHH------HHHHCHHHHHHHHHHHHHHHHHHHH----HTTCCE-EEEEEEGG
T ss_pred             --HHHHHHHHhcCC--CCEEEECCCccCcC------cchhhHHHHHHHHhHHHHHHHHHHH----HhCCCE-EEEECCHH
Confidence              445555544442  66999999976421      1345578899999999999999864    344556 99999966


Q ss_pred             cc
Q 028656          197 LM  198 (206)
Q Consensus       197 ~~  198 (206)
                      .+
T Consensus       147 v~  148 (397)
T 1gy8_A          147 IF  148 (397)
T ss_dssp             GT
T ss_pred             Hh
Confidence            54

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.63  E-value=1.1e-15  Score=125.88  Aligned_cols=133  Identities=20%  Similarity=0.146  Sum_probs=93.4

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh-----HHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK-----LKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      ++++||||+|+||++++++|+++|++|++++|+.+.     ++++.+..... ....+.++.+|++|.  +.++.+.+..
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~Dl~d~--~~~~~~~~~~  101 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAH-IEGNMKLHYGDLTDS--TCLVKIINEV  101 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC----------CEEEEECCTTCH--HHHHHHHHHH
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccc-cCCCceEEEccCCCH--HHHHHHHHhc
Confidence            689999999999999999999999999999998643     22221111100 123577889999975  4444444333


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                         ++|++|||||....      ..+.+++++.+++|+.|+..+++++.+... ++.++ ||++||..++..
T Consensus       102 ---~~d~vih~A~~~~~------~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~~~~-iv~~SS~~~~~~  162 (375)
T 1t2a_A          102 ---KPTEIYNLGAQSHV------KISFDLAEYTADVDGVGTLRLLDAVKTCGL-INSVK-FYQASTSELYGK  162 (375)
T ss_dssp             ---CCSEEEECCSCCCH------HHHHHSHHHHHHHHTHHHHHHHHHHHHTTC-TTTCE-EEEEEEGGGTCS
T ss_pred             ---CCCEEEECCCcccc------cccccCHHHHHHHHHHHHHHHHHHHHHhCC-Cccce-EEEecchhhhCC
Confidence               46699999996532      123456788999999999999999877543 12255 999999877643

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=99.62  E-value=2e-15  Score=122.59  Aligned_cols=130  Identities=18%  Similarity=0.226  Sum_probs=90.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcC-CceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYA-KTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      ++|+++||||+|+||++++++|+++|++|+++.|+.+..++..+ +..... +..+.++.+|++|.  +.++   +.+.+
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~--~~~~---~~~~~   77 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKH-LLDLPKAETHLTLWKADLADE--GSFD---EAIKG   77 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHH-HHTSTTHHHHEEEEECCTTST--TTTH---HHHTT
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHH-HHhcccCCCeEEEEEcCCCCH--HHHH---HHHcC
Confidence            57899999999999999999999999999999998765443322 111100 13577889999976  2222   22333


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                        +|++||+|+...     +...+  ..++.+++|+.|+.++++++.+..   +.++ ||++||.++..+
T Consensus        78 --~d~Vih~A~~~~-----~~~~~--~~~~~~~~nv~gt~~ll~a~~~~~---~~~r-iV~~SS~~~~~~  134 (337)
T 2c29_D           78 --CTGVFHVATPMD-----FESKD--PENEVIKPTIEGMLGIMKSCAAAK---TVRR-LVFTSSAGTVNI  134 (337)
T ss_dssp             --CSEEEECCCCCC-----SSCSS--HHHHTHHHHHHHHHHHHHHHHHHS---CCCE-EEEECCGGGTSC
T ss_pred             --CCEEEEeccccC-----CCCCC--hHHHHHHHHHHHHHHHHHHHHhCC---CccE-EEEeeeHhhccc
Confidence              569999998541     11222  235789999999999999987632   2455 999999876543

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=99.62  E-value=1.2e-14  Score=120.56  Aligned_cols=138  Identities=17%  Similarity=0.112  Sum_probs=94.4

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHH----------------HHHHHHHHhcCCceEEEEEEe
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK----------------DVSDSIQAKYAKTQIKSVVVD  112 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~----------------~~~~~~~~~~~~~~~~~~~~d  112 (206)
                      ...++.+++||||+|.||++++++|+++|++|++++|+.....                +..+++... .+..+.++.+|
T Consensus         7 ~~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~~~D   85 (404)
T 1i24_A            7 HHHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL-TGKSIELYVGD   85 (404)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH-HCCCCEEEESC
T ss_pred             cccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhc-cCCceEEEECC
Confidence            3456899999999999999999999999999999998754321                111111111 13456788999


Q ss_pred             cCCCchHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEe
Q 028656          113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNI  192 (206)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~i  192 (206)
                      +++.  +.++.+.+..   ++|++|||||.....   ....+++++++++++|+.|+..+++++.+.    +.+.+||++
T Consensus        86 l~d~--~~~~~~~~~~---~~D~Vih~A~~~~~~---~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~----~~~~~~V~~  153 (404)
T 1i24_A           86 ICDF--EFLAESFKSF---EPDSVVHFGEQRSAP---YSMIDRSRAVYTQHNNVIGTLNVLFAIKEF----GEECHLVKL  153 (404)
T ss_dssp             TTSH--HHHHHHHHHH---CCSEEEECCSCCCHH---HHTSCHHHHHHHHHHHHHHHHHHHHHHHHH----CTTCEEEEE
T ss_pred             CCCH--HHHHHHHhcc---CCCEEEECCCCCCcc---chhhCccchhhhHHHHHHHHHHHHHHHHHh----CCCcEEEEe
Confidence            9975  4444444333   466999999976431   122356677889999999999999998653    333239999


Q ss_pred             ccccccc
Q 028656          193 GKAELMC  199 (206)
Q Consensus       193 sS~~~~~  199 (206)
                      ||.+.+.
T Consensus       154 SS~~vyg  160 (404)
T 1i24_A          154 GTMGEYG  160 (404)
T ss_dssp             CCGGGGC
T ss_pred             CcHHHhC
Confidence            9976543

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=99.62  E-value=1.5e-15  Score=123.39  Aligned_cols=127  Identities=17%  Similarity=0.146  Sum_probs=88.7

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      +++||||+|+||++++++|+++|++|++++|......+..+.+.... +..+..+.+|+++.  +.++++.+..   ++|
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~--~~~~~~~~~~---~~D   75 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNE--ALMTEILHDH---AID   75 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCH--HHHHHHHHHT---TCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhc-CCcceEEEccCCCH--HHHHHHhhcc---CCC
Confidence            68999999999999999999999999999875322111222222211 33467788999975  4444444432   467


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      ++|||||.....      ...++.++.+++|+.|+..+++++.    +.+.++ ||++||.+.+
T Consensus        76 ~vih~A~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~-iv~~SS~~~~  128 (338)
T 1udb_A           76 TVIHFAGLKAVG------ESVQKPLEYYDNNVNGTLRLISAMR----AANVKN-FIFSSSATVY  128 (338)
T ss_dssp             EEEECCSCCCHH------HHHHCHHHHHHHHHHHHHHHHHHHH----HHTCCE-EEEEEEGGGG
T ss_pred             EEEECCccCccc------cchhcHHHHHHHHHHHHHHHHHHHH----hcCCCe-EEEEccHHHh
Confidence            999999975321      1223456789999999999998753    345566 9999997665

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=99.61  E-value=9.6e-16  Score=124.48  Aligned_cols=124  Identities=15%  Similarity=0.116  Sum_probs=89.9

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +++++++||||+|+||++++++|+++|++|++++|+.+...+.   +..   -..+.++.+|++|.  +.++++.+.   
T Consensus        19 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---l~~---~~~~~~~~~Dl~d~--~~~~~~~~~---   87 (333)
T 2q1w_A           19 SHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREH---LKD---HPNLTFVEGSIADH--ALVNQLIGD---   87 (333)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGG---SCC---CTTEEEEECCTTCH--HHHHHHHHH---
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhh---Hhh---cCCceEEEEeCCCH--HHHHHHHhc---
Confidence            5789999999999999999999999999999999986432110   100   03567889999975  444444333   


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      .++|++|||||.....       +.++++  +++|+.++..+++++.+    .+.++ ||++||.+.+.
T Consensus        88 ~~~D~vih~A~~~~~~-------~~~~~~--~~~N~~~~~~l~~a~~~----~~~~~-iV~~SS~~~~g  142 (333)
T 2q1w_A           88 LQPDAVVHTAASYKDP-------DDWYND--TLTNCVGGSNVVQAAKK----NNVGR-FVYFQTALCYG  142 (333)
T ss_dssp             HCCSEEEECCCCCSCT-------TCHHHH--HHHHTHHHHHHHHHHHH----TTCSE-EEEEEEGGGGC
T ss_pred             cCCcEEEECceecCCC-------ccCChH--HHHHHHHHHHHHHHHHH----hCCCE-EEEECcHHHhC
Confidence            1466999999976431       223444  99999999999999865    34456 99999977654

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=99.61  E-value=3.3e-15  Score=121.69  Aligned_cols=120  Identities=18%  Similarity=0.183  Sum_probs=87.5

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKE  126 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  126 (206)
                      +..+.++|+++||||+|+||++++++|+++|++|++++|+.+.              ..+.++.+|++|.  +   .+.+
T Consensus        13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~--------------~~~~~~~~Dl~d~--~---~~~~   73 (347)
T 4id9_A           13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG--------------TGGEEVVGSLEDG--Q---ALSD   73 (347)
T ss_dssp             --------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS--------------SCCSEEESCTTCH--H---HHHH
T ss_pred             cccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC--------------CCccEEecCcCCH--H---HHHH
Confidence            3445779999999999999999999999999999999998754              2356788999876  3   3333


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      .+.  ++|++||+||....        +.+++++.+++|+.|+..+++++.+    .+.++ ||++||...+..
T Consensus        74 ~~~--~~d~vih~A~~~~~--------~~~~~~~~~~~nv~~~~~ll~a~~~----~~~~~-~V~~SS~~vyg~  132 (347)
T 4id9_A           74 AIM--GVSAVLHLGAFMSW--------APADRDRMFAVNVEGTRRLLDAASA----AGVRR-FVFASSGEVYPE  132 (347)
T ss_dssp             HHT--TCSEEEECCCCCCS--------SGGGHHHHHHHHTHHHHHHHHHHHH----TTCSE-EEEEEEGGGTTT
T ss_pred             HHh--CCCEEEECCcccCc--------chhhHHHHHHHHHHHHHHHHHHHHH----cCCCe-EEEECCHHHhCC
Confidence            344  45699999986532        2233488999999999999999754    44556 999999766543

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.60  E-value=3.7e-15  Score=120.79  Aligned_cols=132  Identities=16%  Similarity=0.020  Sum_probs=92.4

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      ..+++++||||+|+||++++++|+++|++|++++|+.++...  +.+........+.++.+|+++.  +.++++.+..  
T Consensus        12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~Dl~d~--~~~~~~~~~~--   85 (335)
T 1rpn_A           12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTR--WRLRELGIEGDIQYEDGDMADA--CSVQRAVIKA--   85 (335)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC--HHHHHTTCGGGEEEEECCTTCH--HHHHHHHHHH--
T ss_pred             ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccc--cchhhccccCceEEEECCCCCH--HHHHHHHHHc--
Confidence            568899999999999999999999999999999998754211  0111111134577889999875  4444444333  


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC-CceEEEecccccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK-GLSMLNIGKAELMCS  200 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~~iv~isS~~~~~~  200 (206)
                       ++|++||+||....      +.+.+++++.+++|+.|+..+++++.+.    +. ++ +|++||...+.+
T Consensus        86 -~~d~Vih~A~~~~~------~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~~~~~-~v~~SS~~v~g~  144 (335)
T 1rpn_A           86 -QPQEVYNLAAQSFV------GASWNQPVTTGVVDGLGVTHLLEAIRQF----SPETR-FYQASTSEMFGL  144 (335)
T ss_dssp             -CCSEEEECCSCCCH------HHHTTSHHHHHHHHTHHHHHHHHHHHHH----CTTSE-EEEEEEGGGGCS
T ss_pred             -CCCEEEECccccch------hhhhhChHHHHHHHHHHHHHHHHHHHHh----CCCCe-EEEEeCHHHhCC
Confidence             46699999996532      1122345788999999999999998653    32 55 999999776543

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=99.60  E-value=1e-15  Score=123.26  Aligned_cols=126  Identities=17%  Similarity=0.213  Sum_probs=84.2

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc-Chhh---HHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR-NPDK---LKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r-~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      ||+++||||+|+||++++++|+++|++|+++.| +.+.   .... +++..  ...++.++.+|++|.  +.++.   .+
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~--~~~~~~~~~~Dl~d~--~~~~~---~~   72 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFL-TNLPG--ASEKLHFFNADLSNP--DSFAA---AI   72 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHH-HTSTT--HHHHEEECCCCTTCG--GGGHH---HH
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHH-Hhhhc--cCCceEEEecCCCCH--HHHHH---HH
Confidence            588999999999999999999999999999998 6532   1111 11100  012467788999976  22332   33


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      .+  +|++||+|+.. .    +.+  .+.+++++++|+.|+.++++++.+.   .+.++ ||++||..+..
T Consensus        73 ~~--~d~vih~A~~~-~----~~~--~~~~~~~~~~nv~gt~~l~~aa~~~---~~~~~-iV~~SS~~~~~  130 (322)
T 2p4h_X           73 EG--CVGIFHTASPI-D----FAV--SEPEEIVTKRTVDGALGILKACVNS---KTVKR-FIYTSSGSAVS  130 (322)
T ss_dssp             TT--CSEEEECCCCC---------------CHHHHHHHHHHHHHHHHHTTC---SSCCE-EEEEEEGGGTS
T ss_pred             cC--CCEEEEcCCcc-c----CCC--CChHHHHHHHHHHHHHHHHHHHHhc---CCccE-EEEeccHHHcc
Confidence            33  46999999632 1    111  1113568999999999999998763   13455 99999987654

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=99.59  E-value=2.4e-15  Score=115.04  Aligned_cols=112  Identities=21%  Similarity=0.307  Sum_probs=88.5

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC-CchHHHHHHHHHhcCCCc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG-DLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~i  133 (206)
                      +++||||+|+||++++++|+++|++|++++|+.++.++.          ..+.++.+|++| .     +.+.+.+.+  +
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~----------~~~~~~~~D~~d~~-----~~~~~~~~~--~   64 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY----------NNVKAVHFDVDWTP-----EEMAKQLHG--M   64 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC----------TTEEEEECCTTSCH-----HHHHTTTTT--C
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc----------CCceEEEecccCCH-----HHHHHHHcC--C
Confidence            589999999999999999999999999999998764321          457889999998 4     344444454  5


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      |++|||||....              +.+++|+.++..+++++.    +.+.++ ||++||..+..+.+
T Consensus        65 d~vi~~ag~~~~--------------~~~~~n~~~~~~l~~a~~----~~~~~~-iv~~SS~~~~~~~~  114 (219)
T 3dqp_A           65 DAIINVSGSGGK--------------SLLKVDLYGAVKLMQAAE----KAEVKR-FILLSTIFSLQPEK  114 (219)
T ss_dssp             SEEEECCCCTTS--------------SCCCCCCHHHHHHHHHHH----HTTCCE-EEEECCTTTTCGGG
T ss_pred             CEEEECCcCCCC--------------CcEeEeHHHHHHHHHHHH----HhCCCE-EEEECcccccCCCc
Confidence            699999997642              158899999999998873    345566 99999988776554

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=99.59  E-value=1.3e-15  Score=124.94  Aligned_cols=130  Identities=12%  Similarity=0.143  Sum_probs=92.4

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHH--CCCcEEEEEcChhhHHHHHH------HHHHhcCCceEEEEEEecCCCchHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAK--TGLNLVLVGRNPDKLKDVSD------SIQAKYAKTQIKSVVVDFSGDLDEG  120 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~--~g~~V~~~~r~~~~~~~~~~------~~~~~~~~~~~~~~~~d~~~~~~~~  120 (206)
                      +++++++++||||+|+||++++++|++  .|++|++++|+.+......+      .... ..+..+.++.+|+++.  +.
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~--~~   82 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKN-LIGFKGEVIAADINNP--LD   82 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGG-GTTCCSEEEECCTTCH--HH
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhh-ccccCceEEECCCCCH--HH
Confidence            456799999999999999999999999  99999999997652110000      0001 1234567889999986  44


Q ss_pred             HHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       121 ~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      ++.+  ...  ++|++|||||....        +.+++++.+++|+.|+..+++++..     ..++ ||++||...+.
T Consensus        83 ~~~~--~~~--~~D~vih~A~~~~~--------~~~~~~~~~~~Nv~gt~~ll~aa~~-----~~~~-~V~~SS~~vyg  143 (362)
T 3sxp_A           83 LRRL--EKL--HFDYLFHQAAVSDT--------TMLNQELVMKTNYQAFLNLLEIARS-----KKAK-VIYASSAGVYG  143 (362)
T ss_dssp             HHHH--TTS--CCSEEEECCCCCGG--------GCCCHHHHHHHHTHHHHHHHHHHHH-----TTCE-EEEEEEGGGGC
T ss_pred             HHHh--hcc--CCCEEEECCccCCc--------cccCHHHHHHHHHHHHHHHHHHHHH-----cCCc-EEEeCcHHHhC
Confidence            4443  133  57799999995432        2345688999999999999999843     2356 99999965543

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=99.59  E-value=3.4e-15  Score=115.66  Aligned_cols=113  Identities=17%  Similarity=0.168  Sum_probs=80.4

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCC-CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      ...|+++||||+|+||++++++|+++| ++|++++|+.+++++.        ....+..+.+|++|.     +.+.+.+.
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~--------~~~~~~~~~~Dl~d~-----~~~~~~~~   87 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP--------YPTNSQIIMGDVLNH-----AALKQAMQ   87 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS--------CCTTEEEEECCTTCH-----HHHHHHHT
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc--------ccCCcEEEEecCCCH-----HHHHHHhc
Confidence            346899999999999999999999999 8999999998764421        134578889999976     33344444


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +  +|++|||||...          .   .           ..++.+++.|++.+.++ ||++||..++.+.|.
T Consensus        88 ~--~D~vv~~a~~~~----------~---~-----------~~~~~~~~~~~~~~~~~-iV~iSS~~~~~~~~~  134 (236)
T 3qvo_A           88 G--QDIVYANLTGED----------L---D-----------IQANSVIAAMKACDVKR-LIFVLSLGIYDEVPG  134 (236)
T ss_dssp             T--CSEEEEECCSTT----------H---H-----------HHHHHHHHHHHHTTCCE-EEEECCCCC------
T ss_pred             C--CCEEEEcCCCCc----------h---h-----------HHHHHHHHHHHHcCCCE-EEEEecceecCCCCc
Confidence            4  459999997411          0   0           23557778788777777 999999887766553

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=99.58  E-value=1.7e-15  Score=124.04  Aligned_cols=128  Identities=16%  Similarity=0.131  Sum_probs=92.5

Q ss_pred             EEEEECCCChHHHHHHHHHHHC-CCcEEEEEcCh--hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNP--DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      +++||||+|+||++++++|+++ |++|++++|+.  ...+.+ +++.   ....+.++.+|++|.  +.++.+.+..   
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-~~~~---~~~~~~~~~~Dl~d~--~~~~~~~~~~---   72 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESL-SDIS---ESNRYNFEHADICDS--AEITRIFEQY---   72 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGG-TTTT---TCTTEEEEECCTTCH--HHHHHHHHHH---
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhh-hhhh---cCCCeEEEECCCCCH--HHHHHHHhhc---
Confidence            4899999999999999999998 79999999865  222221 1111   134678889999986  4444444332   


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-----CCceEEEecccccc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-----KGLSMLNIGKAELM  198 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-----~g~~iv~isS~~~~  198 (206)
                      ++|++|||||....      +.+.+++++.+++|+.|+..+++++.+.|..-+     .++ ||++||.+.+
T Consensus        73 ~~d~vih~A~~~~~------~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~-iv~~SS~~v~  137 (361)
T 1kew_A           73 QPDAVMHLAAESHV------DRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFR-FHHISTDEVY  137 (361)
T ss_dssp             CCSEEEECCSCCCH------HHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCE-EEEEEEGGGG
T ss_pred             CCCEEEECCCCcCh------hhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCce-EEEeCCHHHh
Confidence            46699999997532      223455688999999999999999998764321     236 9999997644

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=99.58  E-value=1.8e-15  Score=123.23  Aligned_cols=133  Identities=17%  Similarity=0.110  Sum_probs=89.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      .++++++||||+|+||++++++|+++|  ++|+..+|......  .+.+........+.++.+|++|.  +.++.+.+..
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~Dl~d~--~~~~~~~~~~   97 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGN--LNNVKSIQDHPNYYFVKGEIQNG--ELLEHVIKER   97 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCC--GGGGTTTTTCTTEEEEECCTTCH--HHHHHHHHHH
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccc--hhhhhhhccCCCeEEEEcCCCCH--HHHHHHHhhc
Confidence            568999999999999999999999999  67777777642110  11111122245788899999986  4444444332


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                         ++|++||+||.....      .+.++.++.+++|+.|+..+++++.+    .+.++ +|++||...+...
T Consensus        98 ---~~d~Vih~A~~~~~~------~~~~~~~~~~~~nv~~~~~ll~a~~~----~~~~~-~v~~SS~~vy~~~  156 (346)
T 4egb_A           98 ---DVQVIVNFAAESHVD------RSIENPIPFYDTNVIGTVTLLELVKK----YPHIK-LVQVSTDEVYGSL  156 (346)
T ss_dssp             ---TCCEEEECCCCC---------------CHHHHHHTHHHHHHHHHHHH----STTSE-EEEEEEGGGGCCC
T ss_pred             ---CCCEEEECCcccchh------hhhhCHHHHHHHHHHHHHHHHHHHHh----cCCCE-EEEeCchHHhCCC
Confidence               466999999976432      23455678899999999999999754    34556 9999998766543

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=99.57  E-value=5.6e-15  Score=119.91  Aligned_cols=125  Identities=20%  Similarity=0.217  Sum_probs=84.8

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH--HHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS--DSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +|+++||||+|+||++++++|+++|++|+++.|+.++.++..  +.+.   ....+.++.+|++|.  +.++   +.+.+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~--~~~~---~~~~~   80 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ---ELGDLKIFRADLTDE--LSFE---APIAG   80 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG---GGSCEEEEECCTTTS--SSSH---HHHTT
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC---CCCcEEEEecCCCCh--HHHH---HHHcC
Confidence            789999999999999999999999999999999875432111  1221   123577788999975  2222   22333


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                        +|++||+||...     +..  .+..++.+++|+.|+.++++++.+..   +.++ ||++||.++.
T Consensus        81 --~D~Vih~A~~~~-----~~~--~~~~~~~~~~nv~gt~~ll~aa~~~~---~v~r-~V~~SS~~~~  135 (338)
T 2rh8_A           81 --CDFVFHVATPVH-----FAS--EDPENDMIKPAIQGVVNVMKACTRAK---SVKR-VILTSSAAAV  135 (338)
T ss_dssp             --CSEEEEESSCCC-----C-----------CHHHHHHHHHHHHHHHHCT---TCCE-EEEECCHHHH
T ss_pred             --CCEEEEeCCccC-----CCC--CCcHHHHHHHHHHHHHHHHHHHHHcC---CcCE-EEEEecHHHe
Confidence              469999998542     111  11224589999999999999986532   2455 9999998743

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=99.57  E-value=8.5e-15  Score=117.72  Aligned_cols=115  Identities=16%  Similarity=0.213  Sum_probs=64.5

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      +++++||||+|+||++++++|+++|++|++++|+.+.            ++    .+.+|+++.  +.++++.+..   +
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~------------~~----~~~~Dl~d~--~~~~~~~~~~---~   60 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR------------PK----FEQVNLLDS--NAVHHIIHDF---Q   60 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------------------------CHHHHHHH---C
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC------------CC----eEEecCCCH--HHHHHHHHhh---C
Confidence            5789999999999999999999999999999987543            11    566788865  2233333322   4


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      +|++|||||....      +.+.+++++.+++|+.|+..+++++.+.    + ++ +|++||..++.+
T Consensus        61 ~d~vih~A~~~~~------~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~-~~-~v~~SS~~v~~~  116 (315)
T 2ydy_A           61 PHVIVHCAAERRP------DVVENQPDAASQLNVDASGNLAKEAAAV----G-AF-LIYISSDYVFDG  116 (315)
T ss_dssp             CSEEEECC-------------------------CHHHHHHHHHHHHH----T-CE-EEEEEEGGGSCS
T ss_pred             CCEEEECCcccCh------hhhhcCHHHHHHHHHHHHHHHHHHHHHc----C-Ce-EEEEchHHHcCC
Confidence            6699999997542      2245667889999999999999998752    3 45 999999887654

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=99.57  E-value=4.1e-15  Score=120.52  Aligned_cols=125  Identities=14%  Similarity=0.151  Sum_probs=90.3

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChh--hHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPD--KLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      +++++||||+|+||++++++|+++|  ++|++++|+..  ..+.+ +++.   ....+.++.+|++|.  +.++++   +
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~-~~~~---~~~~~~~~~~Dl~d~--~~~~~~---~   73 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANL-KDLE---DDPRYTFVKGDVADY--ELVKEL---V   73 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGG-TTTT---TCTTEEEEECCTTCH--HHHHHH---H
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHH-hhhc---cCCceEEEEcCCCCH--HHHHHH---h
Confidence            5679999999999999999999986  89999998642  12211 1111   134678889999986  333333   3


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      +  ++|++|||||....      +.+.+++++.+++|+.|+..+++++.+.   ...++ ||++||.+.+
T Consensus        74 ~--~~d~vih~A~~~~~------~~~~~~~~~~~~~Nv~g~~~l~~a~~~~---~~~~~-iv~~SS~~vy  131 (336)
T 2hun_A           74 R--KVDGVVHLAAESHV------DRSISSPEIFLHSNVIGTYTLLESIRRE---NPEVR-FVHVSTDEVY  131 (336)
T ss_dssp             H--TCSEEEECCCCCCH------HHHHHCTHHHHHHHHHHHHHHHHHHHHH---CTTSE-EEEEEEGGGG
T ss_pred             h--CCCEEEECCCCcCh------hhhhhCHHHHHHHHHHHHHHHHHHHHHh---CCCcE-EEEeccHHHH
Confidence            4  35699999997532      2234556788999999999999999874   22245 9999997654

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=99.56  E-value=1.9e-14  Score=116.86  Aligned_cols=120  Identities=18%  Similarity=0.204  Sum_probs=85.5

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      .+++||||+|+||++++++|+++|++|++++|+.++.+++    .    +..+.++.+|++|.     +.+.+.+.+  +
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l----~----~~~~~~~~~Dl~d~-----~~~~~~~~~--~   78 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRL----A----YLEPECRVAEMLDH-----AGLERALRG--L   78 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGG----G----GGCCEEEECCTTCH-----HHHHHHTTT--C
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhh----c----cCCeEEEEecCCCH-----HHHHHHHcC--C
Confidence            4799999999999999999999999999999987654321    1    12467788999875     333444444  5


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      |++||+||....        +.+++++.+++|+.++.++++++.+.    +.++ +|++||..++.+.
T Consensus        79 d~vih~a~~~~~--------~~~~~~~~~~~n~~~~~~l~~a~~~~----~~~~-~v~~SS~~~~~~~  133 (342)
T 2x4g_A           79 DGVIFSAGYYPS--------RPRRWQEEVASALGQTNPFYAACLQA----RVPR-ILYVGSAYAMPRH  133 (342)
T ss_dssp             SEEEEC--------------------CHHHHHHHHHHHHHHHHHHH----TCSC-EEEECCGGGSCCC
T ss_pred             CEEEECCccCcC--------CCCCHHHHHHHHHHHHHHHHHHHHHc----CCCe-EEEECCHHhhCcC
Confidence            699999996431        23456888999999999999998763    4466 9999998876543

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=1.1e-14  Score=111.70  Aligned_cols=116  Identities=16%  Similarity=0.229  Sum_probs=87.0

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      ++++||||+|+||++++++|+++|++|++++|+.++.++.         ...+.++.+|++|.     +.+.+.+.+  +
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~Dl~d~-----~~~~~~~~~--~   68 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE---------NEHLKVKKADVSSL-----DEVCEVCKG--A   68 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC---------CTTEEEECCCTTCH-----HHHHHHHTT--C
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc---------cCceEEEEecCCCH-----HHHHHHhcC--C
Confidence            6899999999999999999999999999999998764321         24578899999976     333444444  5


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      |++|||||.....            .+.+++|+.++..+++++.+    .+.++ +|++||..+..+.+
T Consensus        69 d~vi~~a~~~~~~------------~~~~~~n~~~~~~l~~~~~~----~~~~~-~v~~Ss~~~~~~~~  120 (227)
T 3dhn_A           69 DAVISAFNPGWNN------------PDIYDETIKVYLTIIDGVKK----AGVNR-FLMVGGAGSLFIAP  120 (227)
T ss_dssp             SEEEECCCC------------------CCSHHHHHHHHHHHHHHH----TTCSE-EEEECCSTTSEEET
T ss_pred             CEEEEeCcCCCCC------------hhHHHHHHHHHHHHHHHHHH----hCCCE-EEEeCChhhccCCC
Confidence            6999999854221            12688999999999888644    44456 99999988765543

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=99.55  E-value=4.3e-15  Score=119.25  Aligned_cols=119  Identities=15%  Similarity=0.111  Sum_probs=89.3

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      ++++||||+|+||++++++|+++|++|++++|+.+...+.        ....+..+.+|+.|.  +    +.+.+.+   
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--------~~~~~~~~~~Dl~d~--~----~~~~~~~---   63 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREF--------VNPSAELHVRDLKDY--S----WGAGIKG---   63 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGG--------SCTTSEEECCCTTST--T----TTTTCCC---
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhh--------cCCCceEEECccccH--H----HHhhcCC---
Confidence            4699999999999999999999999999999987543221        133467788899876  2    2223333   


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      |++||+||....      +.+.+++++.+++|+.|+.++++++..    .+.++ ||++||...+..
T Consensus        64 d~vih~A~~~~~------~~~~~~~~~~~~~n~~~~~~l~~a~~~----~~~~~-iv~~SS~~vyg~  119 (312)
T 3ko8_A           64 DVVFHFAANPEV------RLSTTEPIVHFNENVVATFNVLEWARQ----TGVRT-VVFASSSTVYGD  119 (312)
T ss_dssp             SEEEECCSSCSS------SGGGSCHHHHHHHHHHHHHHHHHHHHH----HTCCE-EEEEEEGGGGCS
T ss_pred             CEEEECCCCCCc------hhhhhCHHHHHHHHHHHHHHHHHHHHH----cCCCE-EEEeCcHHHhCC
Confidence            699999995432      334556788899999999999999743    34556 999999876643

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=99.55  E-value=1.9e-14  Score=127.80  Aligned_cols=132  Identities=17%  Similarity=0.211  Sum_probs=92.2

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      .+++++++||||+|+||++++++|+++|++|++++|+.....+..+++... ....+.++.+|+++.  +.++++.+.. 
T Consensus         8 ~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~v~~v~~Dl~d~--~~l~~~~~~~-   83 (699)
T 1z45_A            8 ESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVL-TKHHIPFYEVDLCDR--KGLEKVFKEY-   83 (699)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHH-HTSCCCEEECCTTCH--HHHHHHHHHS-
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhc-cCCceEEEEcCCCCH--HHHHHHHHhC-
Confidence            456899999999999999999999999999999999765432222333221 134566788999975  4444444432 


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                        ++|++||+||......      ..+..++.+++|+.++..+++++.    +.+.++ ||++||.+.+
T Consensus        84 --~~D~Vih~A~~~~~~~------~~~~~~~~~~~Nv~gt~~ll~a~~----~~~~~~-iV~~SS~~vy  139 (699)
T 1z45_A           84 --KIDSVIHFAGLKAVGE------STQIPLRYYHNNILGTVVLLELMQ----QYNVSK-FVFSSSATVY  139 (699)
T ss_dssp             --CCCEEEECCSCCCHHH------HHHSHHHHHHHHHHHHHHHHHHHH----HHTCCE-EEEEEEGGGG
T ss_pred             --CCCEEEECCcccCcCc------cccCHHHHHHHHHHHHHHHHHHHH----HcCCCE-EEEECcHHHh
Confidence              4669999999754211      112235679999999999988754    344566 9999997765

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=99.55  E-value=1.2e-14  Score=121.83  Aligned_cols=124  Identities=17%  Similarity=0.143  Sum_probs=89.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh---hHHHHHHHHHHhc-------CCceEEEEEEecCCCchHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD---KLKDVSDSIQAKY-------AKTQIKSVVVDFSGDLDEG  120 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~---~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~  120 (206)
                      ..+++++||||+|+||++++++|++.|++|++++|+.+   ..+++.+.+...+       ...++.++.+|+++..  .
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~--~  144 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMD--D  144 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---C--C
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcc--c
Confidence            45789999999999999999999999999999999986   4444444443321       1356888999998741  1


Q ss_pred             HHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccc
Q 028656          121 VERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAEL  197 (206)
Q Consensus       121 ~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~  197 (206)
                      +.    ..+  ++|++|||||....         .+++++.+++|+.|+.++++++.+     +.++ +|++||..+
T Consensus       145 l~----~~~--~~d~Vih~A~~~~~---------~~~~~~~~~~Nv~g~~~l~~aa~~-----~~~~-~v~~SS~~~  200 (427)
T 4f6c_A          145 VV----LPE--NMDTIIHAGARTDH---------FGDDDEFEKVNVQGTVDVIRLAQQ-----HHAR-LIYVSTISV  200 (427)
T ss_dssp             CC----CSS--CCSEEEECCCCC----------------CHHHHHHHHHHHHHHHHHH-----TTCE-EEEEEEGGG
T ss_pred             CC----CcC--CCCEEEECCcccCC---------CCCHHHHHHHHHHHHHHHHHHHHh-----cCCc-EEEECchHh
Confidence            12    333  46699999997532         235678899999999999999865     3345 999999887

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=99.55  E-value=4.1e-15  Score=117.10  Aligned_cols=115  Identities=15%  Similarity=0.193  Sum_probs=88.0

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      |+++||||+|+||++++++|+++|++|++++|+.++..           ...+.++.+|++|.  +.   +.+.+.+  +
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----------~~~~~~~~~Dl~d~--~~---~~~~~~~--~   64 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA-----------EAHEEIVACDLADA--QA---VHDLVKD--C   64 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC-----------CTTEEECCCCTTCH--HH---HHHHHTT--C
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc-----------CCCccEEEccCCCH--HH---HHHHHcC--C
Confidence            68999999999999999999999999999999875311           12357788999875  33   3333444  5


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      |++|||||....          +++++.+++|+.++..+++++.+    .+.++ ||++||..++.+.
T Consensus        65 d~vi~~a~~~~~----------~~~~~~~~~n~~~~~~l~~a~~~----~~~~~-iv~~SS~~~~~~~  117 (267)
T 3ay3_A           65 DGIIHLGGVSVE----------RPWNDILQANIIGAYNLYEAARN----LGKPR-IVFASSNHTIGYY  117 (267)
T ss_dssp             SEEEECCSCCSC----------CCHHHHHHHTHHHHHHHHHHHHH----TTCCE-EEEEEEGGGSTTS
T ss_pred             CEEEECCcCCCC----------CCHHHHHHHHHHHHHHHHHHHHH----hCCCE-EEEeCCHHHhCCC
Confidence            699999996521          23578899999999999999754    34566 9999998776543

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=99.54  E-value=1.8e-14  Score=119.08  Aligned_cols=129  Identities=12%  Similarity=-0.042  Sum_probs=93.9

Q ss_pred             CcccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHH
Q 028656           46 AKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIK  125 (206)
Q Consensus        46 ~~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  125 (206)
                      ...+...+++++||||+|+||++++++|+++|++|++++|+.++....        ....+.++.+|++|.  +.++   
T Consensus        22 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--------~~~~v~~~~~Dl~d~--~~~~---   88 (379)
T 2c5a_A           22 EQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE--------DMFCDEFHLVDLRVM--ENCL---   88 (379)
T ss_dssp             CCSCTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG--------GGTCSEEEECCTTSH--HHHH---
T ss_pred             cccccccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh--------ccCCceEEECCCCCH--HHHH---
Confidence            344556678999999999999999999999999999999987542211        012456788999875  3333   


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      +.+.  ++|++||+||.....     ..+.+++++.+++|+.++.++++++.+    .+.++ ||++||...+.
T Consensus        89 ~~~~--~~d~Vih~A~~~~~~-----~~~~~~~~~~~~~Nv~g~~~ll~a~~~----~~~~~-~V~~SS~~v~~  150 (379)
T 2c5a_A           89 KVTE--GVDHVFNLAADMGGM-----GFIQSNHSVIMYNNTMISFNMIEAARI----NGIKR-FFYASSACIYP  150 (379)
T ss_dssp             HHHT--TCSEEEECCCCCCCH-----HHHTTCHHHHHHHHHHHHHHHHHHHHH----TTCSE-EEEEEEGGGSC
T ss_pred             HHhC--CCCEEEECceecCcc-----cccccCHHHHHHHHHHHHHHHHHHHHH----cCCCE-EEEEeehheeC
Confidence            3334  456999999975421     111234678899999999999999753    34456 99999976654

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=99.53  E-value=3.5e-14  Score=108.65  Aligned_cols=112  Identities=13%  Similarity=0.168  Sum_probs=82.6

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      +++||||+|+||++++++|+++|++|++++|+.++.+++.        ...+..+.+|++|...       +.+++  +|
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--------~~~~~~~~~D~~d~~~-------~~~~~--~d   64 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL--------GATVATLVKEPLVLTE-------ADLDS--VD   64 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT--------CTTSEEEECCGGGCCH-------HHHTT--CS
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccccc--------CCCceEEecccccccH-------hhccc--CC
Confidence            5999999999999999999999999999999987655331        2346788999998733       45554  55


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      ++|||||.....     +        ..++|+.++..++++    +++.+ ++ +|++||.++..+.+
T Consensus        65 ~vi~~ag~~~~~-----~--------~~~~n~~~~~~l~~a----~~~~~-~~-~v~~SS~~~~~~~~  113 (224)
T 3h2s_A           65 AVVDALSVPWGS-----G--------RGYLHLDFATHLVSL----LRNSD-TL-AVFILGSASLAMPG  113 (224)
T ss_dssp             EEEECCCCCTTS-----S--------CTHHHHHHHHHHHHT----CTTCC-CE-EEEECCGGGSBCTT
T ss_pred             EEEECCccCCCc-----c--------hhhHHHHHHHHHHHH----HHHcC-Cc-EEEEecceeeccCC
Confidence            999999976221     0        135677776555555    55555 66 99999987765443

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=99.53  E-value=5.2e-14  Score=107.27  Aligned_cols=110  Identities=15%  Similarity=0.144  Sum_probs=78.2

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      +++||||+|+||++++++|+++|++|++++|+.++.++..         ..+.++.+|++|...       +.+++  +|
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---------~~~~~~~~D~~d~~~-------~~~~~--~d   63 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---------KDINILQKDIFDLTL-------SDLSD--QN   63 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---------SSSEEEECCGGGCCH-------HHHTT--CS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---------CCCeEEeccccChhh-------hhhcC--CC
Confidence            5899999999999999999999999999999987655321         346788999998733       44554  55


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      ++|||||....               ..++|+.++..++++    +++.+.++ +|++||..+..+.+
T Consensus        64 ~vi~~ag~~~~---------------~~~~~~~~~~~l~~a----~~~~~~~~-~v~~SS~~~~~~~~  111 (221)
T 3ew7_A           64 VVVDAYGISPD---------------EAEKHVTSLDHLISV----LNGTVSPR-LLVVGGAASLQIDE  111 (221)
T ss_dssp             EEEECCCSSTT---------------TTTSHHHHHHHHHHH----HCSCCSSE-EEEECCCC------
T ss_pred             EEEECCcCCcc---------------ccchHHHHHHHHHHH----HHhcCCce-EEEEecceEEEcCC
Confidence            99999997421               134466666655555    44455566 99999988765544

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=99.53  E-value=3.8e-14  Score=114.52  Aligned_cols=122  Identities=16%  Similarity=0.087  Sum_probs=90.3

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      ++++||||+|+||++++++|+++|++|++++|+.....   +.+     ...+..+.+|+++.  +.++++.+.   .++
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~-----~~~~~~~~~D~~~~--~~~~~~~~~---~~~   68 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE---DAI-----TEGAKFYNGDLRDK--AFLRDVFTQ---ENI   68 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG---GGS-----CTTSEEEECCTTCH--HHHHHHHHH---SCE
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch---hhc-----CCCcEEEECCCCCH--HHHHHHHhh---cCC
Confidence            57999999999999999999999999999999764322   111     12466788999875  444444333   257


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      |++||+||.....      .+.+++++.+++|+.++..+++++..    .+.++ +|++||...+.
T Consensus        69 d~vih~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~a~~~----~~~~~-~v~~Ss~~~~~  123 (330)
T 2c20_A           69 EAVMHFAADSLVG------VSMEKPLQYYNNNVYGALCLLEVMDE----FKVDK-FIFSSTAATYG  123 (330)
T ss_dssp             EEEEECCCCCCHH------HHHHSHHHHHHHHHHHHHHHHHHHHH----TTCCE-EEEECCGGGGC
T ss_pred             CEEEECCcccCcc------ccccCHHHHHHHHhHHHHHHHHHHHH----cCCCE-EEEeCCceeeC
Confidence            7999999975421      13455788999999999999998643    44456 99999977654

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.52  E-value=1.9e-15  Score=114.90  Aligned_cols=120  Identities=10%  Similarity=0.064  Sum_probs=88.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      .+++++||||+|+||++++++|+++|+  +|++++|+.++            ....+..+.+|+++.     +.+.+.+ 
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~------------~~~~~~~~~~D~~~~-----~~~~~~~-   65 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------------EHPRLDNPVGPLAEL-----LPQLDGS-   65 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------------CCTTEECCBSCHHHH-----GGGCCSC-
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc------------cCCCceEEeccccCH-----HHHHHhh-
Confidence            467899999999999999999999998  99999998765            023456667777653     1111112 


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCCC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFHY  205 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~y  205 (206)
                         +|++|||||....        +.+++++.+++|+.++..+++++.+    .+.++ +|++||..+..+++..|
T Consensus        66 ---~d~vi~~a~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~-~v~~Ss~~~~~~~~~~y  125 (215)
T 2a35_A           66 ---IDTAFCCLGTTIK--------EAGSEEAFRAVDFDLPLAVGKRALE----MGARH-YLVVSALGADAKSSIFY  125 (215)
T ss_dssp             ---CSEEEECCCCCHH--------HHSSHHHHHHHHTHHHHHHHHHHHH----TTCCE-EEEECCTTCCTTCSSHH
T ss_pred             ---hcEEEECeeeccc--------cCCCHHHHHHhhHHHHHHHHHHHHH----cCCCE-EEEECCcccCCCCccHH
Confidence               6699999996532        1334678899999999999998754    34556 99999988765544333

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=99.52  E-value=2.8e-14  Score=107.53  Aligned_cols=116  Identities=16%  Similarity=0.179  Sum_probs=85.1

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      +++++||||+|+||++++++|+++|++|++++|+.++.+..        ....+.++.+|++|.     +.+.+.+.+  
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~--------~~~~~~~~~~D~~~~-----~~~~~~~~~--   67 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE--------GPRPAHVVVGDVLQA-----ADVDKTVAG--   67 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS--------SCCCSEEEESCTTSH-----HHHHHHHTT--
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc--------cCCceEEEEecCCCH-----HHHHHHHcC--
Confidence            47899999999999999999999999999999998654321        134567888999875     333344444  


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      +|++|||||....     .+.        .++|+.++..+++++.+    .+.++ +|++||...+...
T Consensus        68 ~d~vi~~a~~~~~-----~~~--------~~~n~~~~~~~~~~~~~----~~~~~-~v~~Ss~~~~~~~  118 (206)
T 1hdo_A           68 QDAVIVLLGTRND-----LSP--------TTVMSEGARNIVAAMKA----HGVDK-VVACTSAFLLWDP  118 (206)
T ss_dssp             CSEEEECCCCTTC-----CSC--------CCHHHHHHHHHHHHHHH----HTCCE-EEEECCGGGTSCT
T ss_pred             CCEEEECccCCCC-----CCc--------cchHHHHHHHHHHHHHH----hCCCe-EEEEeeeeeccCc
Confidence            5699999986542     111        24788888888887643    44566 9999998765543

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=99.52  E-value=8.9e-14  Score=113.86  Aligned_cols=147  Identities=10%  Similarity=-0.067  Sum_probs=104.1

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHH-HCCCcEEEEEcChhh------------HHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLA-KTGLNLVLVGRNPDK------------LKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~-~~g~~V~~~~r~~~~------------~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      ....+|++||||||+|||++.+..++ +.|+.++++++..+.            .....+.+++.  +.+...+.||+++
T Consensus        46 ~~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~--G~~a~~i~~Dv~d  123 (401)
T 4ggo_A           46 GAKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKRE--GLYSVTIDGDAFS  123 (401)
T ss_dssp             TSCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHH--TCCEEEEESCTTS
T ss_pred             ccCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHc--CCCceeEeCCCCC
Confidence            34568999999999999999999999 679999999886532            23445566664  6678899999998


Q ss_pred             C--chHHHHHHHHHhcCCCccEEEEeccccCCc-----------ccc---------------------cccCCHHHHHHH
Q 028656          116 D--LDEGVERIKEAIEGLDVGVLINNVGISYPY-----------ARF---------------------FHEVDQVLLKNL  161 (206)
Q Consensus       116 ~--~~~~~~~~~~~~~~~~id~lvnnAg~~~~~-----------~~~---------------------~~~~~~~~~~~~  161 (206)
                      +  .++.++.+.+.+|+  +|++|||+|.....           .+|                     ++..+.++++.+
T Consensus       124 ~e~i~~vi~~i~~~~G~--IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T  201 (401)
T 4ggo_A          124 DEIKAQVIEEAKKKGIK--FDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAAT  201 (401)
T ss_dssp             HHHHHHHHHHHHHTTCC--EEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCC--CCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHH
Confidence            5  36777888888886  55999999876321           011                     112345555544


Q ss_pred             ---HhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          162 ---IKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       162 ---~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                         |....++.+...+...+.|  .+.+ +++.+|+..+...+|
T Consensus       202 ~~vMg~s~~s~w~~al~~a~ll--a~G~-siva~SYiGse~t~P  242 (401)
T 4ggo_A          202 VKVMGGEDWERWIKQLSKEGLL--EEGC-ITLAYSYIGPEATQA  242 (401)
T ss_dssp             HHHHSSHHHHHHHHHHHHTTCE--EEEE-EEEEEECCCCGGGHH
T ss_pred             HHHHhhhHHHHHHHHHHhhhcc--cCCc-eEEEEeccCcceeec
Confidence               4445555666666666655  2234 499999998887777

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=99.51  E-value=2.4e-14  Score=117.70  Aligned_cols=123  Identities=15%  Similarity=0.167  Sum_probs=91.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHC-CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecC-CCchHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS-GDLDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~  128 (206)
                      +.+++++||||+|.||++++++|+++ |++|++++|+.++..+..       ....+.++.+|++ +.  +.++.+.+  
T Consensus        22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~-------~~~~v~~~~~Dl~~d~--~~~~~~~~--   90 (372)
T 3slg_A           22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLV-------KHERMHFFEGDITINK--EWVEYHVK--   90 (372)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGG-------GSTTEEEEECCTTTCH--HHHHHHHH--
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhc-------cCCCeEEEeCccCCCH--HHHHHHhc--
Confidence            56899999999999999999999998 999999999876544321       1346788999999 54  33333333  


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                         ++|++||+||.....      ...++.++.+++|+.++..+++++..    .+ ++ +|++||...+.
T Consensus        91 ---~~d~Vih~A~~~~~~------~~~~~~~~~~~~nv~~~~~ll~a~~~----~~-~~-~v~~SS~~vyg  146 (372)
T 3slg_A           91 ---KCDVILPLVAIATPA------TYVKQPLRVFELDFEANLPIVRSAVK----YG-KH-LVFPSTSEVYG  146 (372)
T ss_dssp             ---HCSEEEECBCCCCHH------HHHHCHHHHHHHHTTTTHHHHHHHHH----HT-CE-EEEECCGGGGB
T ss_pred             ---cCCEEEEcCccccHH------HHhhCHHHHHHHHHHHHHHHHHHHHH----hC-Cc-EEEeCcHHHhC
Confidence               356999999976532      12344567889999999999998754    34 55 99999966544

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=99.51  E-value=3.1e-14  Score=115.89  Aligned_cols=122  Identities=16%  Similarity=0.149  Sum_probs=89.1

Q ss_pred             cEEEEECCCChHHHHHHHHHHHC--CCcEEEEEcChhh-HHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKT--GLNLVLVGRNPDK-LKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~--g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      ++++||||+|+||++++++|+++  |++|++++|+... ..+..+++    .+..+.++.+|++|.  +   .+.+.+.+
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~--~---~~~~~~~~   75 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI----LGDRVELVVGDIADA--E---LVDKLAAK   75 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG----CSSSEEEEECCTTCH--H---HHHHHHTT
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhh----ccCCeEEEECCCCCH--H---HHHHHhhc
Confidence            68999999999999999999998  8999999997521 11111111    134678889999976  3   33344444


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      .  |++||+||....      +.+.+++++.+++|+.|+..+++++.+.    + ++ ||++||...+
T Consensus        76 ~--d~vih~A~~~~~------~~~~~~~~~~~~~Nv~g~~~l~~a~~~~----~-~~-~v~~SS~~vy  129 (348)
T 1oc2_A           76 A--DAIVHYAAESHN------DNSLNDPSPFIHTNFIGTYTLLEAARKY----D-IR-FHHVSTDEVY  129 (348)
T ss_dssp             C--SEEEECCSCCCH------HHHHHCCHHHHHHHTHHHHHHHHHHHHH----T-CE-EEEEEEGGGG
T ss_pred             C--CEEEECCcccCc------cchhhCHHHHHHHHHHHHHHHHHHHHHh----C-Ce-EEEeccccee
Confidence            3  599999997532      2233456788999999999999998764    3 35 9999997654

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=99.51  E-value=7.8e-14  Score=109.73  Aligned_cols=113  Identities=14%  Similarity=0.169  Sum_probs=86.0

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      +++||||+|+||++++++|++ |++|++++|+.+..           .+     +.+|+++.  +.++++.+..   ++|
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~~-----------~~-----~~~Dl~~~--~~~~~~~~~~---~~d   59 (273)
T 2ggs_A            2 RTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEIQ-----------GG-----YKLDLTDF--PRLEDFIIKK---RPD   59 (273)
T ss_dssp             CEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCCT-----------TC-----EECCTTSH--HHHHHHHHHH---CCS
T ss_pred             EEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcCC-----------CC-----ceeccCCH--HHHHHHHHhc---CCC
Confidence            589999999999999999994 89999999987420           12     67898875  4444444333   466


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      ++|||||....      +.+.+++++.+++|+.++..+++++.+    .+ ++ +|++||..++.+.
T Consensus        60 ~vi~~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~-iv~~SS~~~~~~~  114 (273)
T 2ggs_A           60 VIINAAAMTDV------DKCEIEKEKAYKINAEAVRHIVRAGKV----ID-SY-IVHISTDYVFDGE  114 (273)
T ss_dssp             EEEECCCCCCH------HHHHHCHHHHHHHHTHHHHHHHHHHHH----TT-CE-EEEEEEGGGSCSS
T ss_pred             EEEECCcccCh------hhhhhCHHHHHHHhHHHHHHHHHHHHH----hC-Ce-EEEEecceeEcCC
Confidence            99999997542      223466789999999999999999854    23 45 9999998876543

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=99.50  E-value=4.1e-14  Score=112.51  Aligned_cols=110  Identities=15%  Similarity=0.158  Sum_probs=83.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      ...++++||||+|+||++++++|+++|++|++++|+                       .+|++|.  +.++++.+..  
T Consensus        10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~Dl~d~--~~~~~~~~~~--   62 (292)
T 1vl0_A           10 HHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ-----------------------DLDITNV--LAVNKFFNEK--   62 (292)
T ss_dssp             --CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT-----------------------TCCTTCH--HHHHHHHHHH--
T ss_pred             cccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc-----------------------cCCCCCH--HHHHHHHHhc--
Confidence            457899999999999999999999999999999996                       1577765  3344433332  


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                       ++|++||+||....      +.+.+++++.+++|+.|+..+++++.+    .+ .+ +|++||.+.+.+
T Consensus        63 -~~d~vih~A~~~~~------~~~~~~~~~~~~~nv~~~~~l~~a~~~----~~-~~-iv~~SS~~v~~~  119 (292)
T 1vl0_A           63 -KPNVVINCAAHTAV------DKCEEQYDLAYKINAIGPKNLAAAAYS----VG-AE-IVQISTDYVFDG  119 (292)
T ss_dssp             -CCSEEEECCCCCCH------HHHHHCHHHHHHHHTHHHHHHHHHHHH----HT-CE-EEEEEEGGGSCS
T ss_pred             -CCCEEEECCccCCH------HHHhcCHHHHHHHHHHHHHHHHHHHHH----cC-Ce-EEEechHHeECC
Confidence             36699999996532      223456788999999999999999865    23 35 999999876544

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=99.50  E-value=1.2e-13  Score=112.00  Aligned_cols=121  Identities=14%  Similarity=0.129  Sum_probs=88.7

Q ss_pred             cEEEEECCCChHHHHHHHHHHHC-CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      ++++||||+|+||++++++|+++ |++|++++|+.++.++..       ....+.++.+|+++.. +.++++.   .+  
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~-------~~~~~~~~~~D~~~~~-~~~~~~~---~~--   67 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-------NHPHFHFVEGDISIHS-EWIEYHV---KK--   67 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-------TCTTEEEEECCTTTCS-HHHHHHH---HH--
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh-------cCCCeEEEeccccCcH-HHHHhhc---cC--
Confidence            46999999999999999999998 899999999876543211       1345788899999742 2233332   22  


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      +|++||+||...+..      ..++.++.+++|+.++..+++++.+    .+ ++ +|++||...+.
T Consensus        68 ~d~vih~A~~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~-~v~~SS~~v~g  122 (345)
T 2bll_A           68 CDVVLPLVAIATPIE------YTRNPLRVFELDFEENLRIIRYCVK----YR-KR-IIFPSTSEVYG  122 (345)
T ss_dssp             CSEEEECBCCCCHHH------HHHSHHHHHHHHTHHHHHHHHHHHH----TT-CE-EEEECCGGGGB
T ss_pred             CCEEEEcccccCccc------hhcCHHHHHHHHHHHHHHHHHHHHH----hC-Ce-EEEEecHHHcC
Confidence            559999999754311      1234577899999999999988754    34 55 99999976653

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=99.50  E-value=1.8e-14  Score=115.69  Aligned_cols=117  Identities=18%  Similarity=0.161  Sum_probs=85.3

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      +++||||+|+||++++++|+++|++|++++|..+...+   .+     ...+..+.+|+++.  +.++++.+..   ++|
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~-----~~~~~~~~~Dl~~~--~~~~~~~~~~---~~d   68 (311)
T 2p5y_A            2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRE---NV-----PKGVPFFRVDLRDK--EGVERAFREF---RPT   68 (311)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGG---GS-----CTTCCEECCCTTCH--HHHHHHHHHH---CCS
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchh---hc-----ccCeEEEECCCCCH--HHHHHHHHhc---CCC
Confidence            58999999999999999999999999999985432110   01     12345678899875  4444444332   356


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKA  195 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~  195 (206)
                      ++||+||....      ..+.+++++.+++|+.|+..+++++.+    .+.++ ||++||.
T Consensus        69 ~vi~~a~~~~~------~~~~~~~~~~~~~N~~g~~~l~~a~~~----~~~~~-iv~~SS~  118 (311)
T 2p5y_A           69 HVSHQAAQASV------KVSVEDPVLDFEVNLLGGLNLLEACRQ----YGVEK-LVFASTG  118 (311)
T ss_dssp             EEEECCSCCCH------HHHHHCHHHHHHHHTHHHHHHHHHHHH----TTCSE-EEEEEEH
T ss_pred             EEEECccccCc------hhhhhCHHHHHHHHHHHHHHHHHHHHH----hCCCE-EEEeCCC
Confidence            99999986532      123456788999999999999998753    34456 9999998

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=99.50  E-value=3e-14  Score=117.55  Aligned_cols=125  Identities=9%  Similarity=0.010  Sum_probs=91.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCC-CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      .+++++++||||+|+||++++++|+++| ++|++++|+.+...+   .+.   ....+.++.+|+++.     +.+.+.+
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~l~---~~~~v~~~~~Dl~d~-----~~l~~~~   97 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKI---NVP---DHPAVRFSETSITDD-----ALLASLQ   97 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGG---GSC---CCTTEEEECSCTTCH-----HHHHHCC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchh---hcc---CCCceEEEECCCCCH-----HHHHHHh
Confidence            4678999999999999999999999999 999999998654211   010   134577888999875     3333444


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC-CCCceEEEecccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR-KKGLSMLNIGKAELM  198 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~~iv~isS~~~~  198 (206)
                      .  ++|++||+||....      ..+.+++++.+++|+.++..+++++.+    . +.++ +|++||...+
T Consensus        98 ~--~~d~Vih~A~~~~~------~~~~~~~~~~~~~nv~~~~~ll~a~~~----~~~~~~-~V~~SS~~vy  155 (377)
T 2q1s_A           98 D--EYDYVFHLATYHGN------QSSIHDPLADHENNTLTTLKLYERLKH----FKRLKK-VVYSAAGCSI  155 (377)
T ss_dssp             S--CCSEEEECCCCSCH------HHHHHCHHHHHHHHTHHHHHHHHHHTT----CSSCCE-EEEEEEC---
T ss_pred             h--CCCEEEECCCccCc------hhhhhCHHHHHHHHHHHHHHHHHHHHH----hCCCCe-EEEeCCHHHc
Confidence            4  46699999996532      123445688999999999999998743    3 3455 9999997644

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=99.49  E-value=7.4e-14  Score=113.24  Aligned_cols=123  Identities=16%  Similarity=0.213  Sum_probs=88.5

Q ss_pred             EEEEECCCChHHHHHHHHHHHC---C---CcEEEEEcChh--hHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKT---G---LNLVLVGRNPD--KLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKE  126 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~---g---~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  126 (206)
                      +++||||+|+||++++++|+++   |   ++|++++|+..  ..+.+ +.+.   .+..+.++.+|++|.  +   .+.+
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~-~~~~---~~~~~~~~~~Dl~d~--~---~~~~   72 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANL-APVD---ADPRLRFVHGDIRDA--G---LLAR   72 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGG-GGGT---TCTTEEEEECCTTCH--H---HHHH
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhh-hhcc---cCCCeEEEEcCCCCH--H---HHHH
Confidence            5899999999999999999997   8   89999998642  11111 1111   134678889999975  3   3333


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      .++  ++|++||+||....      +.+.+++++.+++|+.++..+++++.+.    +.++ ||++||.+.+.
T Consensus        73 ~~~--~~d~Vih~A~~~~~------~~~~~~~~~~~~~Nv~~~~~l~~a~~~~----~~~~-~v~~SS~~vyg  132 (337)
T 1r6d_A           73 ELR--GVDAIVHFAAESHV------DRSIAGASVFTETNVQGTQTLLQCAVDA----GVGR-VVHVSTNQVYG  132 (337)
T ss_dssp             HTT--TCCEEEECCSCCCH------HHHHHCCHHHHHHHTHHHHHHHHHHHHT----TCCE-EEEEEEGGGGC
T ss_pred             Hhc--CCCEEEECCCccCc------hhhhhCHHHHHHHHHHHHHHHHHHHHHc----CCCE-EEEecchHHhC
Confidence            344  46699999996532      1233456788999999999999998763    3456 99999976543

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=99.49  E-value=2.4e-13  Score=115.75  Aligned_cols=128  Identities=17%  Similarity=0.222  Sum_probs=92.3

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHC---CCcEEEEEcChhhHHHHHHHHHHhcC--------------CceEEEEEEec
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKT---GLNLVLVGRNPDKLKDVSDSIQAKYA--------------KTQIKSVVVDF  113 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~---g~~V~~~~r~~~~~~~~~~~~~~~~~--------------~~~~~~~~~d~  113 (206)
                      .++++|+||||+|+||++++++|+++   |++|++++|+.+.... .+.+.+...              ..++.++.+|+
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl  149 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDA-RRRLEKTFDSGDPELLRHFKELAADRLEVVAGDK  149 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHH-HHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHH-HHHHHHHHHhcchhhhhhhhhhccCceEEEEeEC
Confidence            56899999999999999999999998   8999999998764322 222222111              35788999999


Q ss_pred             CCCc----hHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceE
Q 028656          114 SGDL----DEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSM  189 (206)
Q Consensus       114 ~~~~----~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~i  189 (206)
                      ++..    .+.++.+   +.+  +|++|||||....          +.+++.+++|+.|+..+++++.+    .+.++ +
T Consensus       150 ~~~~~gld~~~~~~~---~~~--~D~Vih~Aa~~~~----------~~~~~~~~~Nv~gt~~ll~aa~~----~~~~~-~  209 (478)
T 4dqv_A          150 SEPDLGLDQPMWRRL---AET--VDLIVDSAAMVNA----------FPYHELFGPNVAGTAELIRIALT----TKLKP-F  209 (478)
T ss_dssp             TSGGGGCCHHHHHHH---HHH--CCEEEECCSSCSB----------SSCCEEHHHHHHHHHHHHHHHTS----SSCCC-E
T ss_pred             CCcccCCCHHHHHHH---HcC--CCEEEECccccCC----------cCHHHHHHHHHHHHHHHHHHHHh----CCCCe-E
Confidence            8541    2333333   333  5599999997643          12246789999999999998754    34456 9


Q ss_pred             EEeccccccc
Q 028656          190 LNIGKAELMC  199 (206)
Q Consensus       190 v~isS~~~~~  199 (206)
                      |++||...+.
T Consensus       210 V~iSS~~v~~  219 (478)
T 4dqv_A          210 TYVSTADVGA  219 (478)
T ss_dssp             EEEEEGGGGT
T ss_pred             EEEeehhhcC
Confidence            9999976543

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=99.48  E-value=3.4e-14  Score=113.92  Aligned_cols=121  Identities=12%  Similarity=0.037  Sum_probs=89.2

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHC--CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKT--GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +++++||||+|+||++++++|+++  |++|++++|+.++.+     +..     .+.++.+|++|.  +.++++.+..  
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-----~~~-----~~~~~~~D~~d~--~~~~~~~~~~--   67 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-----VVN-----SGPFEVVNALDF--NQIEHLVEVH--   67 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-----HHH-----SSCEEECCTTCH--HHHHHHHHHT--
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-----ccC-----CCceEEecCCCH--HHHHHHHhhc--
Confidence            467999999999999999999998  899999999876521     111     235678899875  4444443322  


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                       ++|++||+||.....       ..++.++.+++|+.++..+++++.+    .+.++ +|++||...+.+
T Consensus        68 -~~d~vih~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~-~v~~SS~~~~~~  124 (312)
T 2yy7_A           68 -KITDIYLMAALLSAT-------AEKNPAFAWDLNMNSLFHVLNLAKA----KKIKK-IFWPSSIAVFGP  124 (312)
T ss_dssp             -TCCEEEECCCCCHHH-------HHHCHHHHHHHHHHHHHHHHHHHHT----TSCSE-EECCEEGGGCCT
T ss_pred             -CCCEEEECCccCCCc-------hhhChHHHHHHHHHHHHHHHHHHHH----cCCCE-EEEeccHHHhCC
Confidence             466999999864321       1245678899999999999999754    34456 999999876654

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=99.47  E-value=7e-14  Score=112.31  Aligned_cols=118  Identities=14%  Similarity=0.104  Sum_probs=82.1

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      ++++||||+|+||++++++|+++|..|++..|+....+.         ....+..+.+|++++  .. ++   .+.  ++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~v~~~~~~~~~~~~---------~~~~~~~~~~Dl~~~--~~-~~---~~~--~~   64 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEF---------VNEAARLVKADLAAD--DI-KD---YLK--GA   64 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTSCEEEECCCSSCCGGG---------SCTTEEEECCCTTTS--CC-HH---HHT--TC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCCEEEEEcCCCCChhh---------cCCCcEEEECcCChH--HH-HH---Hhc--CC
Confidence            479999999999999999999999444444444332211         134577888999862  21 11   222  46


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      |++||+||...      .+.+.+++++.+++|+.|+..+++++.    +.+.++ ||++||...+.
T Consensus        65 d~vih~a~~~~------~~~~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~-iv~~SS~~vyg  119 (313)
T 3ehe_A           65 EEVWHIAANPD------VRIGAENPDEIYRNNVLATYRLLEAMR----KAGVSR-IVFTSTSTVYG  119 (313)
T ss_dssp             SEEEECCCCCC------CC-CCCCHHHHHHHHHHHHHHHHHHHH----HHTCCE-EEEECCGGGGC
T ss_pred             CEEEECCCCCC------hhhhhhCHHHHHHHHHHHHHHHHHHHH----HcCCCe-EEEeCchHHhC
Confidence            69999998542      233455678899999999999999854    345566 99999977653

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=99.45  E-value=8.9e-14  Score=111.74  Aligned_cols=116  Identities=20%  Similarity=0.224  Sum_probs=86.8

Q ss_pred             EEEEECCCChHHHHHHHHHHHC--CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKT--GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      +++||||+|+||++++++|+++  |++|++++|+.+..+             .+.++.+|++|.  +.++++.+.   .+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-------------~~~~~~~D~~d~--~~~~~~~~~---~~   62 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG-------------GIKFITLDVSNR--DEIDRAVEK---YS   62 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT-------------TCCEEECCTTCH--HHHHHHHHH---TT
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc-------------CceEEEecCCCH--HHHHHHHhh---cC
Confidence            3899999999999999999998  899999998764421             235678899875  444444333   24


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      +|++||+||....       ...++.++.+++|+.|+..+++++.+    .+.++ +|++||...+.+
T Consensus        63 ~d~vih~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~a~~~----~~~~~-~v~~SS~~~~~~  118 (317)
T 3ajr_A           63 IDAIFHLAGILSA-------KGEKDPALAYKVNMNGTYNILEAAKQ----HRVEK-VVIPSTIGVFGP  118 (317)
T ss_dssp             CCEEEECCCCCHH-------HHHHCHHHHHHHHHHHHHHHHHHHHH----TTCCE-EEEEEEGGGCCT
T ss_pred             CcEEEECCcccCC-------ccccChHHHhhhhhHHHHHHHHHHHH----cCCCE-EEEecCHHHhCC
Confidence            6699999986432       12344678899999999999998754    34456 999999887654

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=99.44  E-value=5.2e-13  Score=107.17  Aligned_cols=114  Identities=14%  Similarity=0.097  Sum_probs=84.4

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      .++++||||+|.||++++++|+++|++|++++|+.+..+     +.      .+.++.+|++ .  +   .+.+.+.  +
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~------~~~~~~~Dl~-~--~---~~~~~~~--~   62 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-----IN------DYEYRVSDYT-L--E---DLINQLN--D   62 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC----------------CCEEEECCCC-H--H---HHHHHTT--T
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-----CC------ceEEEEcccc-H--H---HHHHhhc--C
Confidence            468999999999999999999999999999999943322     11      4567888888 5  3   3333444  4


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      +|++||+||.....          +.++.+++|+.++..+++++..    .+.++ +|++||...+..
T Consensus        63 ~d~Vih~a~~~~~~----------~~~~~~~~n~~~~~~ll~a~~~----~~~~r-~v~~SS~~vyg~  115 (311)
T 3m2p_A           63 VDAVVHLAATRGSQ----------GKISEFHDNEILTQNLYDACYE----NNISN-IVYASTISAYSD  115 (311)
T ss_dssp             CSEEEECCCCCCSS----------SCGGGTHHHHHHHHHHHHHHHH----TTCCE-EEEEEEGGGCCC
T ss_pred             CCEEEEccccCCCC----------ChHHHHHHHHHHHHHHHHHHHH----cCCCE-EEEEccHHHhCC
Confidence            66999999976432          2356789999999999998743    45556 999999766543

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=99.44  E-value=2.2e-13  Score=111.38  Aligned_cols=125  Identities=18%  Similarity=0.137  Sum_probs=84.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCC-CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      +++++++||||+|+||++++++|+++| ++|++++|+.+...  .+.+    .+..   +.+|+++.  +.++.+.+...
T Consensus        44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~----~~~~---~~~d~~~~--~~~~~~~~~~~  112 (357)
T 2x6t_A           44 IEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNL----VDLN---IADYMDKE--DFLIQIMAGEE  112 (357)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG--GGGT----TTSC---CSEEEEHH--HHHHHHHTTCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch--hhcc----cCce---EeeecCcH--HHHHHHHhhcc
Confidence            457899999999999999999999999 99999999865421  0111    1222   45677654  33444433210


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      ..++|++||+||....        +.+++++.+++|+.|+..+++++.+    .+. + +|++||...+.+
T Consensus       113 ~~~~d~Vih~A~~~~~--------~~~~~~~~~~~n~~~~~~ll~a~~~----~~~-r-~V~~SS~~v~g~  169 (357)
T 2x6t_A          113 FGDVEAIFHEGACSST--------TEWDGKYMMDNNYQYSKELLHYCLE----REI-P-FLYASSAATYGG  169 (357)
T ss_dssp             CSSCCEEEECCSCCCT--------TCCCHHHHHHHTHHHHHHHHHHHHH----HTC-C-EEEEEEGGGGCS
T ss_pred             cCCCCEEEECCcccCC--------ccCCHHHHHHHHHHHHHHHHHHHHH----cCC-e-EEEEcchHHhCC
Confidence            0146799999997542        1233578899999999999999866    234 6 999999876544

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.42  E-value=5e-14  Score=112.41  Aligned_cols=111  Identities=21%  Similarity=0.246  Sum_probs=83.0

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      .++++|+++||||+||+|++++++|+++|++|++++|+.++.+++.+++....   .+....+|+++.  +   .+.+.+
T Consensus       115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~---~~~~~~~D~~~~--~---~~~~~~  186 (287)
T 1lu9_A          115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADD--A---SRAEAV  186 (287)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSH--H---HHHHHT
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEecCCCH--H---HHHHHH
Confidence            34679999999999999999999999999999999999999888888776531   245567898875  2   333334


Q ss_pred             cCCCccEEEEeccccCCcccccccCCH-HHHHHHHhhhhhHHH
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQ-VLLKNLIKVNVEGTT  170 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~-~~~~~~~~~N~~g~~  170 (206)
                      .+  +|++|||||+.... .++.+.+. ++++..+++|+.+++
T Consensus       187 ~~--~DvlVn~ag~g~~~-~~~~~~~~~~~~~~~~dvn~~~~~  226 (287)
T 1lu9_A          187 KG--AHFVFTAGAIGLEL-LPQAAWQNESSIEIVADYNAQPPL  226 (287)
T ss_dssp             TT--CSEEEECCCTTCCS-BCHHHHTTCTTCCEEEECCCSSSC
T ss_pred             Hh--CCEEEECCCccccC-CChhHcCchHHHHHHHHhhhhhhH
Confidence            43  56999999865321 22333443 566778999999887

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=99.41  E-value=1e-13  Score=109.96  Aligned_cols=106  Identities=13%  Similarity=0.170  Sum_probs=81.0

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      +++||||+|+||++++++|+++|++|++++|.                       .+|+.|.  +.++++.+..   ++|
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~D~~d~--~~~~~~~~~~---~~d   58 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKK-----------------------LLDITNI--SQVQQVVQEI---RPH   58 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTT-----------------------TSCTTCH--HHHHHHHHHH---CCS
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeccc-----------------------ccCCCCH--HHHHHHHHhc---CCC
Confidence            79999999999999999999999999999992                       1577765  4444444333   466


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      ++||+||.....      .+.+++++.+++|+.++..+++++.+.    + .+ +|++||...+.+
T Consensus        59 ~vi~~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~-~v~~SS~~vy~~  112 (287)
T 3sc6_A           59 IIIHCAAYTKVD------QAEKERDLAYVINAIGARNVAVASQLV----G-AK-LVYISTDYVFQG  112 (287)
T ss_dssp             EEEECCCCCCHH------HHTTCHHHHHHHHTHHHHHHHHHHHHH----T-CE-EEEEEEGGGSCC
T ss_pred             EEEECCcccChH------HHhcCHHHHHHHHHHHHHHHHHHHHHc----C-Ce-EEEEchhhhcCC
Confidence            999999976431      122456788999999999999998542    3 35 999999876644

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=99.41  E-value=4.2e-13  Score=109.16  Aligned_cols=121  Identities=16%  Similarity=0.117  Sum_probs=86.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +++++++||||+|+||++++++|+++|++|++++|+.+...+..+.+   .....+.++.+|+.+..          +. 
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~----------~~-   90 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW---IGHENFELINHDVVEPL----------YI-   90 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGG---TTCTTEEEEECCTTSCC----------CC-
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhh---ccCCceEEEeCccCChh----------hc-
Confidence            57899999999999999999999999999999999754321111111   11345778889988752          23 


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                       ++|++||+||......  .    .++.++.+++|+.++..+++++.+    .+ .+ +|++||...+
T Consensus        91 -~~d~vih~A~~~~~~~--~----~~~~~~~~~~n~~~~~~l~~a~~~----~~-~~-~v~~SS~~v~  145 (343)
T 2b69_A           91 -EVDQIYHLASPASPPN--Y----MYNPIKTLKTNTIGTLNMLGLAKR----VG-AR-LLLASTSEVY  145 (343)
T ss_dssp             -CCSEEEECCSCCSHHH--H----TTCHHHHHHHHHHHHHHHHHHHHH----HT-CE-EEEEEEGGGG
T ss_pred             -CCCEEEECccccCchh--h----hhCHHHHHHHHHHHHHHHHHHHHH----hC-Cc-EEEECcHHHh
Confidence             4669999999754311  1    123467899999999999998864    23 35 9999997655

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.41  E-value=1e-12  Score=115.95  Aligned_cols=124  Identities=14%  Similarity=0.145  Sum_probs=91.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHC-CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      .++++++||||+|+||++++++|+++ |++|++++|+.++.++..       ....+.++.+|+++.. +.++.+   +.
T Consensus       313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~-------~~~~v~~v~~Dl~d~~-~~~~~~---~~  381 (660)
T 1z7e_A          313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-------NHPHFHFVEGDISIHS-EWIEYH---VK  381 (660)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGT-------TCTTEEEEECCTTTCH-HHHHHH---HH
T ss_pred             ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhc-------cCCceEEEECCCCCcH-HHHHHh---hc
Confidence            46789999999999999999999998 899999999876543211       1345778899999761 223322   22


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                        ++|++||+||.....      ...++.++.+++|+.|+..+++++.+    .+ ++ +|++||...+.
T Consensus       382 --~~D~Vih~Aa~~~~~------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~~-~r-~V~~SS~~vyg  437 (660)
T 1z7e_A          382 --KCDVVLPLVAIATPI------EYTRNPLRVFELDFEENLRIIRYCVK----YR-KR-IIFPSTSEVYG  437 (660)
T ss_dssp             --HCSEEEECCCCCCTH------HHHHSHHHHHHHHTHHHHHHHHHHHH----TT-CE-EEEECCGGGGB
T ss_pred             --CCCEEEECceecCcc------ccccCHHHHHHhhhHHHHHHHHHHHH----hC-CE-EEEEecHHHcC
Confidence              356999999976431      11234577899999999999998754    33 55 99999977654

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=99.39  E-value=8.2e-13  Score=106.26  Aligned_cols=110  Identities=10%  Similarity=0.101  Sum_probs=81.7

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      +++++||||+|+||++++++|+++|++|++++|+.                      .+|+.|.  +.++++.+..   +
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~----------------------~~D~~d~--~~~~~~~~~~---~   55 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD----------------------ELNLLDS--RAVHDFFASE---R   55 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT----------------------TCCTTCH--HHHHHHHHHH---C
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc----------------------cCCccCH--HHHHHHHHhc---C
Confidence            57899999999999999999999999999988763                      1577764  3344443332   3


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      +|++||+||.....     +...++.++.+++|+.++..+++++.+    .+.++ +|++||...+.
T Consensus        56 ~d~vih~a~~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~-~v~~SS~~vyg  112 (321)
T 1e6u_A           56 IDQVYLAAAKVGGI-----VANNTYPADFIYQNMMIESNIIHAAHQ----NDVNK-LLFLGSSCIYP  112 (321)
T ss_dssp             CSEEEECCCCCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHH----TTCCE-EEEECCGGGSC
T ss_pred             CCEEEEcCeecCCc-----chhhhCHHHHHHHHHHHHHHHHHHHHH----hCCCe-EEEEccHHHcC
Confidence            66999999865321     122344577899999999999998754    34456 99999987653

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=99.38  E-value=1.8e-12  Score=102.64  Aligned_cols=109  Identities=20%  Similarity=0.191  Sum_probs=81.1

Q ss_pred             cEEEEECCCChHHHHHHHHHHHC--CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKT--GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      |+++||||+|+||++++++|+++  |++|++++|+.++.+++.    .    ..+.++.+|++|.     +.+.+.+.+ 
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~----~----~~~~~~~~D~~d~-----~~l~~~~~~-   66 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLA----D----QGVEVRHGDYNQP-----ESLQKAFAG-   66 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHH----H----TTCEEEECCTTCH-----HHHHHHTTT-
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHh----h----cCCeEEEeccCCH-----HHHHHHHhc-
Confidence            46999999999999999999998  999999999987654332    1    1356788999875     334444444 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                       +|++||+||..   .      . +      ++|+.++.++++++.    +.+.++ ||++||..+.
T Consensus        67 -~d~vi~~a~~~---~------~-~------~~n~~~~~~l~~a~~----~~~~~~-~v~~Ss~~~~  111 (287)
T 2jl1_A           67 -VSKLLFISGPH---Y------D-N------TLLIVQHANVVKAAR----DAGVKH-IAYTGYAFAE  111 (287)
T ss_dssp             -CSEEEECCCCC---S------C-H------HHHHHHHHHHHHHHH----HTTCSE-EEEEEETTGG
T ss_pred             -CCEEEEcCCCC---c------C-c------hHHHHHHHHHHHHHH----HcCCCE-EEEECCCCCC
Confidence             56999999842   1      1 1      578899988888864    344556 9999997764

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=99.37  E-value=4.6e-13  Score=106.28  Aligned_cols=113  Identities=14%  Similarity=0.166  Sum_probs=81.5

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      +++++||| +|+||++++++|+++|++|++++|+.+++            ...+.++.+|+.|.  +.++.   .+.+ +
T Consensus         3 ~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~------------~~~~~~~~~Dl~d~--~~~~~---~~~~-~   63 (286)
T 3gpi_A            3 LSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM------------PAGVQTLIADVTRP--DTLAS---IVHL-R   63 (286)
T ss_dssp             CCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC------------CTTCCEEECCTTCG--GGCTT---GGGG-C
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc------------ccCCceEEccCCCh--HHHHH---hhcC-C
Confidence            57899999 59999999999999999999999987652            23456788999875  22222   2222 4


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      +|++||+||...           ++.+..+++|+.++..+++++.    +.+.++ +|++||...+..
T Consensus        64 ~d~vih~a~~~~-----------~~~~~~~~~n~~~~~~ll~a~~----~~~~~~-~v~~SS~~vyg~  115 (286)
T 3gpi_A           64 PEILVYCVAASE-----------YSDEHYRLSYVEGLRNTLSALE----GAPLQH-VFFVSSTGVYGQ  115 (286)
T ss_dssp             CSEEEECHHHHH-----------HC-----CCSHHHHHHHHHHTT----TSCCCE-EEEEEEGGGCCC
T ss_pred             CCEEEEeCCCCC-----------CCHHHHHHHHHHHHHHHHHHHh----hCCCCE-EEEEcccEEEcC
Confidence            669999998632           2236678999999999999874    344456 999999876543

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=99.37  E-value=1.2e-12  Score=106.93  Aligned_cols=118  Identities=21%  Similarity=0.155  Sum_probs=86.9

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCC-----CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTG-----LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g-----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      +++++||||+|+||++++++|+++|     ++|++++|+.+...     .    ....+.++.+|++|.  +.   +.+.
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-----~----~~~~~~~~~~Dl~d~--~~---~~~~   66 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-----H----EDNPINYVQCDISDP--DD---SQAK   66 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-----C----CSSCCEEEECCTTSH--HH---HHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-----c----ccCceEEEEeecCCH--HH---HHHH
Confidence            4689999999999999999999999     99999999875432     0    134567888999875  33   3334


Q ss_pred             hcCCC-ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEE-------Eecccccc
Q 028656          128 IEGLD-VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSML-------NIGKAELM  198 (206)
Q Consensus       128 ~~~~~-id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv-------~isS~~~~  198 (206)
                      +.+.+ +|++||+||....           +.++.+++|+.++.++++++.+..  .+..+ +|       ++||...+
T Consensus        67 ~~~~~~~d~vih~a~~~~~-----------~~~~~~~~n~~~~~~l~~a~~~~~--~~~~~-~v~~~g~~i~~Ss~~vy  131 (364)
T 2v6g_A           67 LSPLTDVTHVFYVTWANRS-----------TEQENCEANSKMFRNVLDAVIPNC--PNLKH-ISLQTGRKHYMGPFESY  131 (364)
T ss_dssp             HTTCTTCCEEEECCCCCCS-----------SHHHHHHHHHHHHHHHHHHHTTTC--TTCCE-EEEECCTHHHHCCGGGT
T ss_pred             HhcCCCCCEEEECCCCCcc-----------hHHHHHHHhHHHHHHHHHHHHHhc--cccce-EEeccCceEEEechhhc
Confidence            44433 7799999986521           246788999999999999986531  13344 66       78887654

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=99.36  E-value=4.3e-13  Score=106.86  Aligned_cols=109  Identities=16%  Similarity=0.143  Sum_probs=80.7

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      +++||||+|+||++++++|+ +|++|++++|+..                   .+.+|+.|.  +.++++.+..   ++|
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~-------------------~~~~D~~d~--~~~~~~~~~~---~~d   56 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK-------------------EFCGDFSNP--KGVAETVRKL---RPD   56 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS-------------------SSCCCTTCH--HHHHHHHHHH---CCS
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc-------------------cccccCCCH--HHHHHHHHhc---CCC
Confidence            69999999999999999999 8999999999751                   235688765  3343333322   466


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      ++||+||.....      .+.+++++.+++|+.++.++++++.+    .+ .+ +|++||...+.+
T Consensus        57 ~vih~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~a~~~----~~-~~-~v~~SS~~vy~~  110 (299)
T 1n2s_A           57 VIVNAAAHTAVD------KAESEPELAQLLNATSVEAIAKAANE----TG-AW-VVHYSTDYVFPG  110 (299)
T ss_dssp             EEEECCCCCCHH------HHTTCHHHHHHHHTHHHHHHHHHHTT----TT-CE-EEEEEEGGGSCC
T ss_pred             EEEECcccCCHh------hhhcCHHHHHHHHHHHHHHHHHHHHH----cC-Cc-EEEEecccEEeC
Confidence            999999965421      12234577899999999999999754    23 35 999999876544

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=99.36  E-value=1.6e-12  Score=103.85  Aligned_cols=121  Identities=17%  Similarity=0.133  Sum_probs=83.2

Q ss_pred             EEEEECCCChHHHHHHHHHHHCC-CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      +++||||+|+||++++++|+++| ++|++++|+.+...  .+.+.    +..   +.+|+.+.  +.++.+.+.....++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~----~~~---~~~d~~~~--~~~~~~~~~~~~~~~   69 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLV----DLN---IADYMDKE--DFLIQIMAGEEFGDV   69 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHHH----TSC---CSEEEEHH--HHHHHHHTTCCCSSC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhcC----cce---eccccccH--HHHHHHHhccccCCC
Confidence            38999999999999999999999 89999999865421  01111    112   45676654  333333321100146


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      |++||+||....        +.++.++.+++|+.++..+++++.+    .+. + +|++||...+.+
T Consensus        70 d~vi~~a~~~~~--------~~~~~~~~~~~n~~~~~~l~~a~~~----~~~-~-~v~~SS~~v~g~  122 (310)
T 1eq2_A           70 EAIFHEGACSST--------TEWDGKYMMDNNYQYSKELLHYCLE----REI-P-FLYASSAATYGG  122 (310)
T ss_dssp             CEEEECCSCCCT--------TCCCHHHHHHHTHHHHHHHHHHHHH----HTC-C-EEEEEEGGGGTT
T ss_pred             cEEEECcccccC--------cccCHHHHHHHHHHHHHHHHHHHHH----cCC-e-EEEEeeHHHhCC
Confidence            799999996542        1223577899999999999999865    244 6 999999866543

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=99.34  E-value=5.9e-13  Score=106.42  Aligned_cols=116  Identities=12%  Similarity=0.017  Sum_probs=79.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      .+++++++||||+|+||++++++|+++|+      +...             ....+..+.+|++|.  +.++.+.+   
T Consensus         3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~-------------~~~~~~~~~~D~~d~--~~~~~~~~---   58 (319)
T 4b8w_A            3 YFQSMRILVTGGSGLVGKAIQKVVADGAG------LPGE-------------DWVFVSSKDADLTDT--AQTRALFE---   58 (319)
T ss_dssp             CCCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTC-------------EEEECCTTTCCTTSH--HHHHHHHH---
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhcCC------cccc-------------cccccCceecccCCH--HHHHHHHh---
Confidence            35688999999999999999999999997      1100             011122235677765  44444433   


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      +.++|++||+||.....     ..+.++.++.+++|+.|+.++++++..    .+.++ +|++||...+.
T Consensus        59 ~~~~d~Vih~A~~~~~~-----~~~~~~~~~~~~~nv~gt~~ll~a~~~----~~~~~-~v~~SS~~vyg  118 (319)
T 4b8w_A           59 KVQPTHVIHLAAMVGGL-----FRNIKYNLDFWRKNVHMNDNVLHSAFE----VGARK-VVSCLSTCIFP  118 (319)
T ss_dssp             HSCCSEEEECCCCCCCH-----HHHTTCHHHHHHHHHHHHHHHHHHHHH----TTCSE-EEEECCGGGSC
T ss_pred             hcCCCEEEECceecccc-----cccccCHHHHHHHHHHHHHHHHHHHHH----cCCCe-EEEEcchhhcC
Confidence            33577999999975321     112234567899999999999998743    34456 99999986553

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=99.34  E-value=6.9e-12  Score=99.51  Aligned_cols=112  Identities=17%  Similarity=0.153  Sum_probs=79.6

Q ss_pred             EEEEECCCChHHHHHHHHHHHC-CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      +++||||+|+||++++++|++. |++|++++|+.++..++        ....+.++.+|++|.     +.+.+.+.+  +
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~--------~~~~v~~~~~D~~d~-----~~l~~~~~~--~   66 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD--------WRGKVSVRQLDYFNQ-----ESMVEAFKG--M   66 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG--------GBTTBEEEECCTTCH-----HHHHHHTTT--C
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh--------hhCCCEEEEcCCCCH-----HHHHHHHhC--C
Confidence            5899999999999999999998 99999999998764322        123467888999876     344445554  5


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      |++||+||.....                ..|+.++..++++    +++.+.++ ||++||.......|
T Consensus        67 d~vi~~a~~~~~~----------------~~~~~~~~~l~~a----a~~~gv~~-iv~~Ss~~~~~~~~  114 (289)
T 3e48_A           67 DTVVFIPSIIHPS----------------FKRIPEVENLVYA----AKQSGVAH-IIFIGYYADQHNNP  114 (289)
T ss_dssp             SEEEECCCCCCSH----------------HHHHHHHHHHHHH----HHHTTCCE-EEEEEESCCSTTCC
T ss_pred             CEEEEeCCCCccc----------------hhhHHHHHHHHHH----HHHcCCCE-EEEEcccCCCCCCC
Confidence            5999999865321                1255555555554    45566666 99999976544444

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=99.31  E-value=5.6e-12  Score=108.24  Aligned_cols=113  Identities=14%  Similarity=0.118  Sum_probs=82.5

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      +++++||||+|.||++++++|+++|++|++++|+.++.+                .+.+|+.+...       +.+.  +
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~----------------~v~~d~~~~~~-------~~l~--~  201 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPG----------------KRFWDPLNPAS-------DLLD--G  201 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTT----------------CEECCTTSCCT-------TTTT--T
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcc----------------ceeecccchhH-------HhcC--C
Confidence            678999999999999999999999999999999876421                14566664422       1223  4


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      +|++||+||.....     ..+.+..+.++++|+.|+..+++++.   .+.+.++ +|++||...+.
T Consensus       202 ~D~Vih~A~~~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~a~a---~~~~~~r-~V~~SS~~vyg  259 (516)
T 3oh8_A          202 ADVLVHLAGEPIFG-----RFNDSHKEAIRESRVLPTKFLAELVA---ESTQCTT-MISASAVGFYG  259 (516)
T ss_dssp             CSEEEECCCC----------CCGGGHHHHHHHTHHHHHHHHHHHH---HCSSCCE-EEEEEEGGGGC
T ss_pred             CCEEEECCCCcccc-----ccchhHHHHHHHHHHHHHHHHHHHHH---hcCCCCE-EEEeCcceEec
Confidence            66999999975431     33455678899999999999999753   2334455 99999977654

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=99.29  E-value=1e-13  Score=111.30  Aligned_cols=121  Identities=12%  Similarity=0.058  Sum_probs=75.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      ..+++++||||+|+||++++++|+++|++|++++|+.+......+.+      ..  ..  + ....    +.+...+. 
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~------~~--~~--~-~~~~----~~~~~Dl~-   68 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGT------GK--FL--E-KPVL----ELEERDLS-   68 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTS------SE--EE--C-SCGG----GCCHHHHT-
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhh------hh--hc--c-CCCe----eEEeCccc-
Confidence            34789999999999999999999999999999999865200000000      00  00  0 0000    00011111 


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                       ++|++||+||......  ..+    +....++ |+.++..+++++.+    .+.++ +|++||...+..
T Consensus        69 -~~d~vi~~a~~~~~~~--~~~----~~~~~~~-n~~~~~~ll~a~~~----~~v~~-~v~~SS~~v~~~  125 (321)
T 3vps_A           69 -DVRLVYHLASHKSVPR--SFK----QPLDYLD-NVDSGRHLLALCTS----VGVPK-VVVGSTCEVYGQ  125 (321)
T ss_dssp             -TEEEEEECCCCCCHHH--HTT----STTTTHH-HHHHHHHHHHHHHH----HTCCE-EEEEEEGGGGCS
T ss_pred             -cCCEEEECCccCChHH--HHh----CHHHHHH-HHHHHHHHHHHHHH----cCCCe-EEEecCHHHhCC
Confidence             5779999999765311  111    1133466 99999999998754    34456 999999876544

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=99.29  E-value=6.7e-12  Score=107.50  Aligned_cols=123  Identities=17%  Similarity=0.127  Sum_probs=88.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh---HHHHHHHHHHh-------cCCceEEEEEEecCCCchHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK---LKDVSDSIQAK-------YAKTQIKSVVVDFSGDLDEGV  121 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~---~~~~~~~~~~~-------~~~~~~~~~~~d~~~~~~~~~  121 (206)
                      ..++++||||+|+||++++++|.+.|++|++++|+.++   .+++.+.++..       ....++.++.+|+++..  .+
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~--~l  226 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMD--DV  226 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCS--SC
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccc--cC
Confidence            35899999999999999999999999999999998763   33333333221       12457899999999841  11


Q ss_pred             HHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccc
Q 028656          122 ERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAEL  197 (206)
Q Consensus       122 ~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~  197 (206)
                      .    ...  ++|++|||||....         ..+++..+++|+.|+..+++++.+     +.++ +|++||...
T Consensus       227 ~----~~~--~~D~Vih~Aa~~~~---------~~~~~~~~~~Nv~gt~~ll~~a~~-----~~~~-~v~iSS~~v  281 (508)
T 4f6l_B          227 V----LPE--NMDTIIHAGARTDH---------FGDDDEFEKVNVQGTVDVIRLAQQ-----HHAR-LIYVSTISV  281 (508)
T ss_dssp             C----CSS--CCSEEEECCCC-----------------CCHHHHHHHHHHHHHHHHT-----TTCE-EEEEEESCT
T ss_pred             C----Ccc--CCCEEEECCceecC---------CCCHHHHhhhHHHHHHHHHHHHHh-----CCCc-EEEeCChhh
Confidence            1    223  57799999987531         123577889999999999998754     3345 999999876

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=99.28  E-value=1.1e-11  Score=98.02  Aligned_cols=106  Identities=20%  Similarity=0.221  Sum_probs=73.7

Q ss_pred             EEEEECCCChHHHHHHHHHHHC--CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKT--GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      +++||||+|+||++++++|+++  |++|++++|+.++.+++.    .    ..+.++.+|++|.     +.+.+.+.+  
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~----~----~~~~~~~~D~~d~-----~~~~~~~~~--   65 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALA----A----QGITVRQADYGDE-----AALTSALQG--   65 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHH----H----TTCEEEECCTTCH-----HHHHHHTTT--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhh----c----CCCeEEEcCCCCH-----HHHHHHHhC--
Confidence            3899999999999999999998  999999999987654322    1    1356778999875     334444554  


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      +|++||+||..   .               +.|+.++..+++++    .+.+.++ +|++||..+.
T Consensus        66 ~d~vi~~a~~~---~---------------~~~~~~~~~l~~a~----~~~~~~~-~v~~Ss~~~~  108 (286)
T 2zcu_A           66 VEKLLLISSSE---V---------------GQRAPQHRNVINAA----KAAGVKF-IAYTSLLHAD  108 (286)
T ss_dssp             CSEEEECC--------------------------CHHHHHHHHH----HHHTCCE-EEEEEETTTT
T ss_pred             CCEEEEeCCCC---c---------------hHHHHHHHHHHHHH----HHcCCCE-EEEECCCCCC
Confidence            45999999842   0               02666776666665    3445566 9999998765

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=99.23  E-value=5.2e-11  Score=94.94  Aligned_cols=112  Identities=17%  Similarity=0.142  Sum_probs=76.0

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCC-CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .++++||||+|++|++++++|+++| ++|++++|++++...  +.+..  .  .+..+.+|+.|.     +.+.+.+.+ 
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~--~~l~~--~--~~~~~~~D~~d~-----~~l~~~~~~-   72 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA--KELRL--Q--GAEVVQGDQDDQ-----VIMELALNG-   72 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH--HHHHH--T--TCEEEECCTTCH-----HHHHHHHTT-
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH--HHHHH--C--CCEEEEecCCCH-----HHHHHHHhc-
Confidence            5789999999999999999999998 999999999876432  22322  1  256778899875     334444554 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE  196 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~  196 (206)
                       +|++|||+|....       ..       .+.|+.++..++++    +++.+.++ ||++|+..
T Consensus        73 -~d~vi~~a~~~~~-------~~-------~~~~~~~~~~~~~a----a~~~gv~~-iv~~S~~~  117 (299)
T 2wm3_A           73 -AYATFIVTNYWES-------CS-------QEQEVKQGKLLADL----ARRLGLHY-VVYSGLEN  117 (299)
T ss_dssp             -CSEEEECCCHHHH-------TC-------HHHHHHHHHHHHHH----HHHHTCSE-EEECCCCC
T ss_pred             -CCEEEEeCCCCcc-------cc-------chHHHHHHHHHHHH----HHHcCCCE-EEEEcCcc
Confidence             5599999985321       01       23455555444444    45556666 99966643

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=99.19  E-value=3e-10  Score=92.97  Aligned_cols=109  Identities=14%  Similarity=0.069  Sum_probs=75.1

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEe-cCCCchHHHHHHHHHhcCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD-FSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~  131 (206)
                      +++++||||+|+||++++++|+++|++|++++|+.++..  .+.+..   ...+..+.+| ++|.     +.+.+.+.+ 
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~--~~~l~~---~~~v~~v~~D~l~d~-----~~l~~~~~~-   73 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI--AEELQA---IPNVTLFQGPLLNNV-----PLMDTLFEG-   73 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH--HHHHHT---STTEEEEESCCTTCH-----HHHHHHHTT-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhh--HHHHhh---cCCcEEEECCccCCH-----HHHHHHHhc-
Confidence            678999999999999999999999999999999987652  122322   2346778899 8875     333344454 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEecccc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGKAE  196 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS~~  196 (206)
                       +|++|||++....                 +.|..+ ..++++    +.+.+ .++ ||++||..
T Consensus        74 -~d~Vi~~a~~~~~-----------------~~~~~~-~~l~~a----a~~~g~v~~-~V~~SS~~  115 (352)
T 1xgk_A           74 -AHLAFINTTSQAG-----------------DEIAIG-KDLADA----AKRAGTIQH-YIYSSMPD  115 (352)
T ss_dssp             -CSEEEECCCSTTS-----------------CHHHHH-HHHHHH----HHHHSCCSE-EEEEECCC
T ss_pred             -CCEEEEcCCCCCc-----------------HHHHHH-HHHHHH----HHHcCCccE-EEEeCCcc
Confidence             4599999864210                 124443 444444    44455 566 99999976

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=99.13  E-value=1.6e-10  Score=94.11  Aligned_cols=104  Identities=16%  Similarity=0.151  Sum_probs=71.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh----hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP----DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      ..++++||||+|+||++++++|++.|++|++++|+.    ++.+. .+.+..    ..+.++.+|+.|.  +.++++.+.
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~-~~~l~~----~~v~~~~~Dl~d~--~~l~~~~~~   81 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKI-FKALED----KGAIIVYGLINEQ--EAMEKILKE   81 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHH-HHHHHH----TTCEEEECCTTCH--HHHHHHHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHH-HHHHHh----CCcEEEEeecCCH--HHHHHHHhh
Confidence            367899999999999999999999999999999987    22221 222322    3467789999875  334433332


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEE
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLN  191 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~  191 (206)
                      .   ++|++||+||..                     |+.++..+++++..    .+ ..+ +|.
T Consensus        82 ~---~~d~Vi~~a~~~---------------------n~~~~~~l~~aa~~----~g~v~~-~v~  117 (346)
T 3i6i_A           82 H---EIDIVVSTVGGE---------------------SILDQIALVKAMKA----VGTIKR-FLP  117 (346)
T ss_dssp             T---TCCEEEECCCGG---------------------GGGGHHHHHHHHHH----HCCCSE-EEC
T ss_pred             C---CCCEEEECCchh---------------------hHHHHHHHHHHHHH----cCCceE-Eee
Confidence            2   356999999852                     67777777777643    34 444 664

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=99.10  E-value=3.4e-10  Score=90.33  Aligned_cols=79  Identities=24%  Similarity=0.318  Sum_probs=58.6

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh-------hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-------DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIK  125 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  125 (206)
                      +++++||||+|++|++++++|+++|++|++++|+.       ++.+.+ +++..    ..+..+.+|++|.     +.+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~-~~l~~----~~v~~v~~D~~d~-----~~l~   71 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELI-DNYQS----LGVILLEGDINDH-----ETLV   71 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHH-HHHHH----TTCEEEECCTTCH-----HHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHH-HHHHh----CCCEEEEeCCCCH-----HHHH
Confidence            46799999999999999999999999999999986       443332 23322    1356788999875     3344


Q ss_pred             HHhcCCCccEEEEecccc
Q 028656          126 EAIEGLDVGVLINNVGIS  143 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~  143 (206)
                      +.+.+  +|++||+||..
T Consensus        72 ~~~~~--~d~vi~~a~~~   87 (307)
T 2gas_A           72 KAIKQ--VDIVICAAGRL   87 (307)
T ss_dssp             HHHTT--CSEEEECSSSS
T ss_pred             HHHhC--CCEEEECCccc
Confidence            44554  55999999853

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=99.06  E-value=1.3e-09  Score=87.19  Aligned_cols=105  Identities=18%  Similarity=0.167  Sum_probs=71.6

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh-----hHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD-----KLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      .++++||||+|++|++++++|+++|++|++++|+..     +.+.+ +.+.    ...+..+.+|+.|.     +.+.+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~-~~~~----~~~~~~~~~D~~d~-----~~l~~~   73 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQML-LYFK----QLGAKLIEASLDDH-----QRLVDA   73 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHH-HHHH----TTTCEEECCCSSCH-----HHHHHH
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHH-HHHH----hCCeEEEeCCCCCH-----HHHHHH
Confidence            467999999999999999999999999999999843     22222 2222    22356788899875     334444


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEE
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLN  191 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~  191 (206)
                      +.+  +|++||++|.....                 .|+.++..+++++    ++.+ .++ +|+
T Consensus        74 ~~~--~d~vi~~a~~~~~~-----------------~~~~~~~~l~~aa----~~~g~v~~-~v~  114 (313)
T 1qyd_A           74 LKQ--VDVVISALAGGVLS-----------------HHILEQLKLVEAI----KEAGNIKR-FLP  114 (313)
T ss_dssp             HTT--CSEEEECCCCSSSS-----------------TTTTTHHHHHHHH----HHSCCCSE-EEC
T ss_pred             HhC--CCEEEECCccccch-----------------hhHHHHHHHHHHH----HhcCCCce-EEe
Confidence            554  55999999865321                 1566666666664    4455 455 874

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=99.06  E-value=5.1e-10  Score=85.70  Aligned_cols=78  Identities=17%  Similarity=0.175  Sum_probs=59.7

Q ss_pred             cCCcEEEEECC----------------CChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecC
Q 028656           51 KYGSWALVTGP----------------TDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS  114 (206)
Q Consensus        51 ~~~k~vlItGa----------------s~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  114 (206)
                      +.||+++||||                |||+|.++|++++++|++|++++++.. ++       .  +. .+  -.+|+.
T Consensus         6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~-------~--~~-g~--~~~dv~   72 (226)
T 1u7z_A            6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LP-------T--PP-FV--KRVDVM   72 (226)
T ss_dssp             TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CC-------C--CT-TE--EEEECC
T ss_pred             CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-cc-------c--CC-CC--eEEccC
Confidence            57999999999                689999999999999999999988652 11       0  11 12  235666


Q ss_pred             CCchHHHHHHHHHhcCCCccEEEEeccccC
Q 028656          115 GDLDEGVERIKEAIEGLDVGVLINNVGISY  144 (206)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~id~lvnnAg~~~  144 (206)
                      + .++..+.+.+.+++.|  ++|||||+..
T Consensus        73 ~-~~~~~~~v~~~~~~~D--ili~~Aav~d   99 (226)
T 1u7z_A           73 T-ALEMEAAVNASVQQQN--IFIGCAAVAD   99 (226)
T ss_dssp             S-HHHHHHHHHHHGGGCS--EEEECCBCCS
T ss_pred             c-HHHHHHHHHHhcCCCC--EEEECCcccC
Confidence            4 4566788888888655  9999999875

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=99.05  E-value=8.2e-10  Score=88.75  Aligned_cols=80  Identities=11%  Similarity=0.150  Sum_probs=57.7

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh-h----hHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-D----KLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~-~----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      .++++||||+|++|++++++|+++|++|++++|+. +    ...+..+.+..    ..+..+.+|+.|.     +.+.+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~----~~v~~v~~D~~d~-----~~l~~a   74 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRS----MGVTIIEGEMEEH-----EKMVSV   74 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHH----TTCEEEECCTTCH-----HHHHHH
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhc----CCcEEEEecCCCH-----HHHHHH
Confidence            46799999999999999999999999999999986 2    11122222322    2356788999875     334444


Q ss_pred             hcCCCccEEEEecccc
Q 028656          128 IEGLDVGVLINNVGIS  143 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~  143 (206)
                      +.+  +|++||+||..
T Consensus        75 ~~~--~d~vi~~a~~~   88 (321)
T 3c1o_A           75 LKQ--VDIVISALPFP   88 (321)
T ss_dssp             HTT--CSEEEECCCGG
T ss_pred             HcC--CCEEEECCCcc
Confidence            554  55999999853

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=99.03  E-value=8.2e-10  Score=88.70  Aligned_cols=77  Identities=23%  Similarity=0.218  Sum_probs=57.5

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh-hHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD-KLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      ++++||||+|++|++++++|+++|++|++++|+.+ +.+. .+++..    ..+.++.+|+.|.     +.+.+.+.+  
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~-~~~l~~----~~v~~v~~Dl~d~-----~~l~~a~~~--   79 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTL-LDEFQS----LGAIIVKGELDEH-----EKLVELMKK--   79 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHH-HHHHHH----TTCEEEECCTTCH-----HHHHHHHTT--
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhH-HHHhhc----CCCEEEEecCCCH-----HHHHHHHcC--
Confidence            57999999999999999999999999999999875 3322 223322    1256788999875     334444554  


Q ss_pred             ccEEEEeccc
Q 028656          133 VGVLINNVGI  142 (206)
Q Consensus       133 id~lvnnAg~  142 (206)
                      +|++||++|.
T Consensus        80 ~d~vi~~a~~   89 (318)
T 2r6j_A           80 VDVVISALAF   89 (318)
T ss_dssp             CSEEEECCCG
T ss_pred             CCEEEECCch
Confidence            5599999985

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=99.03  E-value=2.6e-09  Score=84.38  Aligned_cols=70  Identities=16%  Similarity=0.214  Sum_probs=56.3

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      ++++|||| |.||++++++|+++|++|++++|+.++.+.+.+        ..+.++.+|+.|-  +        +.  ++
T Consensus         6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~--~--------~~--~~   64 (286)
T 3ius_A            6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEP--S--------LD--GV   64 (286)
T ss_dssp             CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCC--C--------CT--TC
T ss_pred             CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEeccccc--c--------cC--CC
Confidence            68999998 999999999999999999999999877654332        2467888999873  1        33  46


Q ss_pred             cEEEEeccccC
Q 028656          134 GVLINNVGISY  144 (206)
Q Consensus       134 d~lvnnAg~~~  144 (206)
                      |++||+||...
T Consensus        65 d~vi~~a~~~~   75 (286)
T 3ius_A           65 THLLISTAPDS   75 (286)
T ss_dssp             CEEEECCCCBT
T ss_pred             CEEEECCCccc
Confidence            69999998654

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=99.02  E-value=4.7e-09  Score=83.53  Aligned_cols=113  Identities=19%  Similarity=0.227  Sum_probs=76.2

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      +++||||+|-||++++++|.++|++|+++.|++..              ..+.   .|         +...+.+.  ++|
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~--------------~~~~---~~---------~~~~~~l~--~~d   53 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP--------------GRIT---WD---------ELAASGLP--SCD   53 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT--------------TEEE---HH---------HHHHHCCC--SCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc--------------Ceee---cc---------hhhHhhcc--CCC
Confidence            58999999999999999999999999999997532              1111   00         11112233  466


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      .+||.||.....  +....+.+..+.+++.|+.++-.+.+++...   ..+...+|+.||...+.+
T Consensus        54 ~vihla~~~i~~--~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~---~~~~~~~i~~Ss~~vyg~  114 (298)
T 4b4o_A           54 AAVNLAGENILN--PLRRWNETFQKEVLGSRLETTQLLAKAITKA---PQPPKAWVLVTGVAYYQP  114 (298)
T ss_dssp             EEEECCCCCSSC--TTSCCCHHHHHHHHHHHHHHHHHHHHHHHHC---SSCCSEEEEEEEGGGSCC
T ss_pred             EEEEeccCcccc--hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHh---CCCceEEEEEeeeeeecC
Confidence            999999854332  2345567777889999999998888776431   122223677777655543

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=99.01  E-value=7.4e-10  Score=88.37  Aligned_cols=82  Identities=22%  Similarity=0.253  Sum_probs=56.9

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhH--HHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL--KDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .++++||||+|++|++++++|+++|++|++++|+....  .+..+.+... ....+..+.+|+.|.  +   .+.+.+.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l-~~~~v~~v~~D~~d~--~---~l~~~~~~   77 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESF-KASGANIVHGSIDDH--A---SLVEAVKN   77 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHH-HTTTCEEECCCTTCH--H---HHHHHHHT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHH-HhCCCEEEEeccCCH--H---HHHHHHcC
Confidence            46799999999999999999999999999999985321  1111112111 123356788899875  3   33334444


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                        +|++||++|.
T Consensus        78 --~d~vi~~a~~   87 (308)
T 1qyc_A           78 --VDVVISTVGS   87 (308)
T ss_dssp             --CSEEEECCCG
T ss_pred             --CCEEEECCcc
Confidence              5599999985

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.95  E-value=8.9e-10  Score=90.38  Aligned_cols=97  Identities=19%  Similarity=0.173  Sum_probs=71.1

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      +++||||+|.||++++++|+++|+ +|+..+|+                           .|.  +.++++.+   +  +
T Consensus         2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~---------------------------~d~--~~l~~~~~---~--~   47 (369)
T 3st7_A            2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ---------------------------TKE--EELESALL---K--A   47 (369)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT---------------------------CCH--HHHHHHHH---H--C
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC---------------------------CCH--HHHHHHhc---c--C
Confidence            699999999999999999999998 88888775                           221  22333322   2  5


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      |++||+||...+.          +.++.+++|+.++..+++++..    .+...++|++||..+..
T Consensus        48 d~Vih~a~~~~~~----------~~~~~~~~n~~~~~~l~~a~~~----~~~~~~~v~~Ss~~~~~   99 (369)
T 3st7_A           48 DFIVHLAGVNRPE----------HDKEFSLGNVSYLDHVLDILTR----NTKKPAILLSSSIQATQ   99 (369)
T ss_dssp             SEEEECCCSBCTT----------CSTTCSSSCCBHHHHHHHHHTT----CSSCCEEEEEEEGGGGS
T ss_pred             CEEEECCcCCCCC----------CHHHHHHHHHHHHHHHHHHHHH----hCCCCeEEEeCchhhcC
Confidence            5999999976431          1245688999999999998743    34442399999987654

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=98.91  E-value=4.1e-09  Score=80.89  Aligned_cols=80  Identities=18%  Similarity=0.249  Sum_probs=58.9

Q ss_pred             CCcEEEEECC----------------CChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           52 YGSWALVTGP----------------TDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        52 ~~k~vlItGa----------------s~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      +||+++||||                ||++|.++|++++++|++|++++|+.....        . ....+..+  |+. 
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~--------~-~~~~~~~~--~v~-   69 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKP--------E-PHPNLSIR--EIT-   69 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCC--------C-CCTTEEEE--ECC-
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccc--------c-CCCCeEEE--EHh-
Confidence            5899999999                788999999999999999999999763210        0 01123333  333 


Q ss_pred             CchHHHHHHHHHhcCCCccEEEEeccccCC
Q 028656          116 DLDEGVERIKEAIEGLDVGVLINNVGISYP  145 (206)
Q Consensus       116 ~~~~~~~~~~~~~~~~~id~lvnnAg~~~~  145 (206)
                      +.++..+.+.+.+++.|  ++|||||+...
T Consensus        70 s~~em~~~v~~~~~~~D--ili~aAAvsD~   97 (232)
T 2gk4_A           70 NTKDLLIEMQERVQDYQ--VLIHSMAVSDY   97 (232)
T ss_dssp             SHHHHHHHHHHHGGGCS--EEEECSBCCSE
T ss_pred             HHHHHHHHHHHhcCCCC--EEEEcCccccc
Confidence            44677788888888655  99999998754

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=98.84  E-value=1.4e-08  Score=76.04  Aligned_cols=79  Identities=20%  Similarity=0.233  Sum_probs=58.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||++|+|+++++.+...|++|++++|++++.+.+.    +.  +..   ..+|..+.  +..+.+.+..++.
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~----~~--g~~---~~~d~~~~--~~~~~~~~~~~~~  106 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS----RL--GVE---YVGDSRSV--DFADEILELTDGY  106 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH----TT--CCS---EEEETTCS--THHHHHHHHTTTC
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----Hc--CCC---EEeeCCcH--HHHHHHHHHhCCC
Confidence            5899999999999999999999999999999999987665432    22  221   12466654  4445555555443


Q ss_pred             CccEEEEecc
Q 028656          132 DVGVLINNVG  141 (206)
Q Consensus       132 ~id~lvnnAg  141 (206)
                      .+|++|||+|
T Consensus       107 ~~D~vi~~~g  116 (198)
T 1pqw_A          107 GVDVVLNSLA  116 (198)
T ss_dssp             CEEEEEECCC
T ss_pred             CCeEEEECCc
Confidence            5889999987

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=98.78  E-value=1.1e-09  Score=94.27  Aligned_cols=101  Identities=15%  Similarity=0.196  Sum_probs=67.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      ++++|+++||||+ |+|++++++|++.|++|++++|+.++.+++.+++.     ..+    .++.+ .        +.++
T Consensus       361 ~l~~k~vlV~GaG-Gig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~-----~~~----~~~~d-l--------~~~~  421 (523)
T 2o7s_A          361 PLASKTVVVIGAG-GAGKALAYGAKEKGAKVVIANRTYERALELAEAIG-----GKA----LSLTD-L--------DNYH  421 (523)
T ss_dssp             -----CEEEECCS-HHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTT-----C-C----EETTT-T--------TTC-
T ss_pred             ccCCCEEEEECCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-----Cce----eeHHH-h--------hhcc
Confidence            3568999999995 99999999999999999999999988887766551     111    12221 1        1112


Q ss_pred             CCCccEEEEeccccCCc---ccccccCCHHHHHHHHhhhhhHH
Q 028656          130 GLDVGVLINNVGISYPY---ARFFHEVDQVLLKNLIKVNVEGT  169 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~---~~~~~~~~~~~~~~~~~~N~~g~  169 (206)
                      ..++|++|||+|+....   ..++.+.+.+++...+++|+.+.
T Consensus       422 ~~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~  464 (523)
T 2o7s_A          422 PEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPR  464 (523)
T ss_dssp             -CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSS
T ss_pred             ccCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCc
Confidence            22467999999985421   13456666777888999999875

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.76  E-value=4.1e-08  Score=66.97  Aligned_cols=73  Identities=16%  Similarity=0.226  Sum_probs=55.4

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCC-CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      +++++|+|+ |++|+++++.|.+.| ++|++++|++++.+...    .    ..+....+|+.+.     +.+.+.+.+ 
T Consensus         5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~-----~~~~~~~~~-   69 (118)
T 3ic5_A            5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDE-----AGLAKALGG-   69 (118)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCH-----HHHHHHTTT-
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCH-----HHHHHHHcC-
Confidence            578999999 999999999999999 89999999988766543    1    1234567787764     333344443 


Q ss_pred             CccEEEEecc
Q 028656          132 DVGVLINNVG  141 (206)
Q Consensus       132 ~id~lvnnAg  141 (206)
                       +|++|+++|
T Consensus        70 -~d~vi~~~~   78 (118)
T 3ic5_A           70 -FDAVISAAP   78 (118)
T ss_dssp             -CSEEEECSC
T ss_pred             -CCEEEECCC
Confidence             569999985

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.69  E-value=2.3e-09  Score=90.40  Aligned_cols=135  Identities=17%  Similarity=0.205  Sum_probs=76.8

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHH------HHhcCCceEEEEEEecCCCchHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI------QAKYAKTQIKSVVVDFSGDLDEGV  121 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~~~~~~d~~~~~~~~~  121 (206)
                      +..+.||+++|||++ +||+++|+.|++.|++|+++++++.+..+.....      .+......+..   +.... ...+
T Consensus       260 g~~L~GKtVvVtGaG-gIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi---~atG~-~~vl  334 (488)
T 3ond_A          260 DVMIAGKVAVVAGYG-DVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFV---TTTGN-KDII  334 (488)
T ss_dssp             CCCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEE---ECSSC-SCSB
T ss_pred             CCcccCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEE---eCCCC-hhhh
Confidence            456789999999998 9999999999999999999999987765544321      00000111111   11100 0111


Q ss_pred             HHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHH-------HhhhhhHHHHHH-HHHhhhhHhCCCCceEEEec
Q 028656          122 ERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNL-------IKVNVEGTTKVT-QAVLPGMLKRKKGLSMLNIG  193 (206)
Q Consensus       122 ~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~-------~~~N~~g~~~~~-~~~~~~~~~~~~g~~iv~is  193 (206)
                      .  .+.+...+.+.+|+|+|...      .+.+.+.++..       +..|+.+.+... +..++.|   ..|+ |||+|
T Consensus       335 ~--~e~l~~mk~gaiVvNaG~~~------~Ei~~~~l~~~~~v~~~~i~~~v~~~~~~~fg~aI~lL---aeGR-IVNls  402 (488)
T 3ond_A          335 M--LDHMKKMKNNAIVCNIGHFD------NEIDMLGLETHPGVKRITIKPQTDRWVFPETNTGIIIL---AEGR-LMNLG  402 (488)
T ss_dssp             C--HHHHTTSCTTEEEEESSSTT------TTBTHHHHHTSTTCEEEEEETTEEEEECTTTCCEEEEE---GGGS-CHHHH
T ss_pred             h--HHHHHhcCCCeEEEEcCCCC------cccchHHHHHhhhhheEEeeeeEEEEEecchHHHHHHH---cCCc-EEEEe
Confidence            0  01233334457888888642      24455555543       233433332222 2333333   2377 99999


Q ss_pred             cccccc
Q 028656          194 KAELMC  199 (206)
Q Consensus       194 S~~~~~  199 (206)
                      |..|..
T Consensus       403 S~~G~p  408 (488)
T 3ond_A          403 CATGHP  408 (488)
T ss_dssp             HSCCSC
T ss_pred             cCcccC
Confidence            988763

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.69  E-value=9.9e-08  Score=79.46  Aligned_cols=83  Identities=22%  Similarity=0.269  Sum_probs=64.4

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCC---CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTG---LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      ++++|+|| ||+|+++++.|++.|   .+|++.+|+.++++++.+++...+ +.++..+.+|+++.  +.++++.+..  
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~--~~l~~~l~~~--   75 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSI--EELVALINEV--   75 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCH--HHHHHHHHHH--
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCH--HHHHHHHHhh--
Confidence            46899999 899999999999998   489999999999999888876532 24567788898875  4444444433  


Q ss_pred             CCccEEEEecccc
Q 028656          131 LDVGVLINNVGIS  143 (206)
Q Consensus       131 ~~id~lvnnAg~~  143 (206)
                       ++|++|||+|..
T Consensus        76 -~~DvVin~ag~~   87 (405)
T 4ina_A           76 -KPQIVLNIALPY   87 (405)
T ss_dssp             -CCSEEEECSCGG
T ss_pred             -CCCEEEECCCcc
Confidence             466999999854

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=98.65  E-value=1.4e-07  Score=76.35  Aligned_cols=80  Identities=18%  Similarity=0.188  Sum_probs=57.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||++|+|+++++.+...|++|++++++.++++.+ +++   + ..    ..+|.++. ++..+.+.+..++ 
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~---g-~~----~~~d~~~~-~~~~~~~~~~~~~-  213 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQI---G-FD----AAFNYKTV-NSLEEALKKASPD-  213 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT---T-CS----EEEETTSC-SCHHHHHHHHCTT-
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-Hhc---C-Cc----EEEecCCH-HHHHHHHHHHhCC-
Confidence            589999999999999999999999999999999998777655 332   1 11    22466651 1333344433333 


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++|||+|.
T Consensus       214 ~~d~vi~~~g~  224 (333)
T 1v3u_A          214 GYDCYFDNVGG  224 (333)
T ss_dssp             CEEEEEESSCH
T ss_pred             CCeEEEECCCh
Confidence            57899999984

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=98.65  E-value=1.8e-08  Score=80.13  Aligned_cols=81  Identities=27%  Similarity=0.435  Sum_probs=58.7

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      ++++|+++|+|++ |+|+++++.|++.| +|++++|+.++.+++.+++...+....  .+.+|+.+.        .+.++
T Consensus       125 ~l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~--~~~~d~~~~--------~~~~~  192 (287)
T 1nvt_A          125 RVKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKF--GEEVKFSGL--------DVDLD  192 (287)
T ss_dssp             CCCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCH--HHHEEEECT--------TCCCT
T ss_pred             CcCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhccccc--ceeEEEeeH--------HHhhC
Confidence            4669999999997 99999999999999 999999999988888877754321110  112333321        12233


Q ss_pred             CCCccEEEEeccccC
Q 028656          130 GLDVGVLINNVGISY  144 (206)
Q Consensus       130 ~~~id~lvnnAg~~~  144 (206)
                        +.|++|||+|...
T Consensus       193 --~~DilVn~ag~~~  205 (287)
T 1nvt_A          193 --GVDIIINATPIGM  205 (287)
T ss_dssp             --TCCEEEECSCTTC
T ss_pred             --CCCEEEECCCCCC
Confidence              4669999999765

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=98.62  E-value=2.2e-07  Score=75.23  Aligned_cols=80  Identities=16%  Similarity=0.288  Sum_probs=59.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||+||+|.++++.+...|++|++++|++++++.+.+ +   + ..    ..+|..+.  +..+.+.+..++.
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~-~---g-~~----~~~d~~~~--~~~~~i~~~~~~~  213 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK-L---G-CH----HTINYSTQ--DFAEVVREITGGK  213 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-H---T-CS----EEEETTTS--CHHHHHHHHHTTC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c---C-CC----EEEECCCH--HHHHHHHHHhCCC
Confidence            48899999999999999999999999999999999877765432 2   2 22    12466554  4445555555444


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++|+|+|.
T Consensus       214 ~~d~vi~~~g~  224 (333)
T 1wly_A          214 GVDVVYDSIGK  224 (333)
T ss_dssp             CEEEEEECSCT
T ss_pred             CCeEEEECCcH
Confidence            68899999985

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=98.61  E-value=2.1e-07  Score=75.11  Aligned_cols=79  Identities=22%  Similarity=0.238  Sum_probs=59.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||++|+|.++++.+...|++|++++|++++++.+.+ +   + ..    ..+|..++  +..+.+.+..++.
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~-~---g-~~----~~~~~~~~--~~~~~~~~~~~~~  208 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-A---G-AW----QVINYREE--DLVERLKEITGGK  208 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-H---T-CS----EEEETTTS--CHHHHHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c---C-CC----EEEECCCc--cHHHHHHHHhCCC
Confidence            48999999999999999999999999999999999877665543 2   1 22    12466554  4455666555444


Q ss_pred             CccEEEEecc
Q 028656          132 DVGVLINNVG  141 (206)
Q Consensus       132 ~id~lvnnAg  141 (206)
                      .+|++|+|+|
T Consensus       209 ~~D~vi~~~g  218 (327)
T 1qor_A          209 KVRVVYDSVG  218 (327)
T ss_dssp             CEEEEEECSC
T ss_pred             CceEEEECCc
Confidence            6889999998

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=98.60  E-value=2.7e-07  Score=75.42  Aligned_cols=80  Identities=14%  Similarity=0.244  Sum_probs=60.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||+||+|.+.++.+...|++|++++|++++++.+ +++   + ..    ..+|..+.  +..+.+.+..++.
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~---g-~~----~~~~~~~~--~~~~~~~~~~~~~  230 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA-EKL---G-AA----AGFNYKKE--DFSEATLKFTKGA  230 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHH---T-CS----EEEETTTS--CHHHHHHHHTTTS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc---C-Cc----EEEecCCh--HHHHHHHHHhcCC
Confidence            589999999999999999999999999999999998877655 333   1 22    22465554  4455666655544


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++|+|+|.
T Consensus       231 ~~d~vi~~~G~  241 (354)
T 2j8z_A          231 GVNLILDCIGG  241 (354)
T ss_dssp             CEEEEEESSCG
T ss_pred             CceEEEECCCc
Confidence            58899999985

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=98.59  E-value=1.8e-07  Score=76.40  Aligned_cols=78  Identities=18%  Similarity=0.228  Sum_probs=58.3

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      ++++|+||+||+|+..++.+...|+ +|+++++++++++.+.+++    +..    ..+|..++  +..+.+.+..++ .
T Consensus       162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~----g~~----~~~d~~~~--~~~~~~~~~~~~-~  230 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL----GFD----AAINYKKD--NVAEQLRESCPA-G  230 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS----CCS----EEEETTTS--CHHHHHHHHCTT-C
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc----CCc----eEEecCch--HHHHHHHHhcCC-C
Confidence            8999999999999999999999999 9999999987766554333    112    22466554  444555555555 6


Q ss_pred             ccEEEEeccc
Q 028656          133 VGVLINNVGI  142 (206)
Q Consensus       133 id~lvnnAg~  142 (206)
                      +|++|+|+|.
T Consensus       231 ~d~vi~~~G~  240 (357)
T 2zb4_A          231 VDVYFDNVGG  240 (357)
T ss_dssp             EEEEEESCCH
T ss_pred             CCEEEECCCH
Confidence            8899999984

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=98.58  E-value=3.9e-07  Score=74.36  Aligned_cols=80  Identities=18%  Similarity=0.210  Sum_probs=59.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||+||+|.+.++.+...|++|+++++++++++.+ +   +.+ ..    ..+|..++  +..+.+.+..++.
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~---~~g-a~----~~~d~~~~--~~~~~~~~~~~~~  238 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV-L---QNG-AH----EVFNHREV--NYIDKIKKYVGEK  238 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-H---HTT-CS----EEEETTST--THHHHHHHHHCTT
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHH-H---HcC-CC----EEEeCCCc--hHHHHHHHHcCCC
Confidence            488999999999999999999999999999999998876633 2   222 12    12465554  4556666666544


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++|+|+|.
T Consensus       239 ~~D~vi~~~G~  249 (351)
T 1yb5_A          239 GIDIIIEMLAN  249 (351)
T ss_dssp             CEEEEEESCHH
T ss_pred             CcEEEEECCCh
Confidence            68899999984

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=98.56  E-value=1.4e-07  Score=76.27  Aligned_cols=120  Identities=19%  Similarity=0.209  Sum_probs=75.9

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCC-------cEEEEEcCh--hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGL-------NLVLVGRNP--DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERI  124 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  124 (206)
                      .+++||||+|.||.+++..|+++|.       +|++++++.  ++.+....++...  ...+  . .|+.+.     ...
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~--~~~~--~-~di~~~-----~~~   74 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDC--AFPL--L-AGLEAT-----DDP   74 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT--TCTT--E-EEEEEE-----SCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcc--cccc--c-CCeEec-----cCh
Confidence            4699999999999999999999886       799999875  3333333344321  1111  1 344332     111


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccc
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE  196 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~  196 (206)
                      .+.+.  +.|++||.||.....     ..+   ..+.+++|+.++..+++++...  .....+ ++++|+..
T Consensus        75 ~~a~~--~~D~Vih~Ag~~~~~-----~~~---~~~~~~~Nv~~t~~l~~a~~~~--~~~~~~-vvv~snp~  133 (327)
T 1y7t_A           75 KVAFK--DADYALLVGAAPRKA-----GME---RRDLLQVNGKIFTEQGRALAEV--AKKDVK-VLVVGNPA  133 (327)
T ss_dssp             HHHTT--TCSEEEECCCCCCCT-----TCC---HHHHHHHHHHHHHHHHHHHHHH--SCTTCE-EEECSSSH
T ss_pred             HHHhC--CCCEEEECCCcCCCC-----CCC---HHHHHHHHHHHHHHHHHHHHhh--cCCCeE-EEEeCCch
Confidence            22333  356999999976421     122   2457899999999999987542  012235 78877754

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.55  E-value=1.9e-07  Score=76.82  Aligned_cols=107  Identities=16%  Similarity=0.196  Sum_probs=67.0

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +++++++|+|+ |++|+++++.+...|++|++++|++++++.+.+.+     +..   +.+|.++.  +.   +.+.+.+
T Consensus       164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~-----g~~---~~~~~~~~--~~---l~~~~~~  229 (369)
T 2eez_A          164 VAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF-----GGR---VITLTATE--AN---IKKSVQH  229 (369)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----TTS---EEEEECCH--HH---HHHHHHH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc-----Cce---EEEecCCH--HH---HHHHHhC
Confidence            67899999999 89999999999999999999999998776654332     222   34555543  22   2233343


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAEL  197 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~  197 (206)
                        .|++|+++|..... .+                    ..+.+..++.|+  +.+. ||++++..+
T Consensus       230 --~DvVi~~~g~~~~~-~~--------------------~li~~~~l~~mk--~gg~-iV~v~~~~g  270 (369)
T 2eez_A          230 --ADLLIGAVLVPGAK-AP--------------------KLVTRDMLSLMK--EGAV-IVDVAVDQG  270 (369)
T ss_dssp             --CSEEEECCC----------------------------CCSCHHHHTTSC--TTCE-EEECC----
T ss_pred             --CCEEEECCCCCccc-cc--------------------hhHHHHHHHhhc--CCCE-EEEEecCCC
Confidence              45999999864310 00                    112345556563  3355 999998764

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=98.53  E-value=3.9e-07  Score=73.76  Aligned_cols=80  Identities=15%  Similarity=0.278  Sum_probs=59.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||+||+|...++.+...|++|+++++++++++.+.+++    +..    ...|..+.  +..+.+.+..++ 
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~----g~~----~~~~~~~~--~~~~~~~~~~~~-  217 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL----GFD----GAIDYKNE--DLAAGLKRECPK-  217 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT----CCS----EEEETTTS--CHHHHHHHHCTT-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----CCC----EEEECCCH--HHHHHHHHhcCC-
Confidence            5899999999999999999999999999999999998876653333    112    12455554  444555555443 


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++++|+|.
T Consensus       218 ~~d~vi~~~g~  228 (336)
T 4b7c_A          218 GIDVFFDNVGG  228 (336)
T ss_dssp             CEEEEEESSCH
T ss_pred             CceEEEECCCc
Confidence            68899999984

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.52  E-value=9.9e-07  Score=70.90  Aligned_cols=85  Identities=16%  Similarity=0.331  Sum_probs=62.0

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC---hhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN---PDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVER  123 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  123 (206)
                      ..++++|+++|+|+ ||+|+++++.|++.|+ +|.+++|+   .++.+++.+++.... +..+.  ..+..+.     +.
T Consensus       149 ~~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~-~~~~~--~~~~~~~-----~~  219 (315)
T 3tnl_A          149 GHDIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKT-DCKAQ--LFDIEDH-----EQ  219 (315)
T ss_dssp             TCCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS-SCEEE--EEETTCH-----HH
T ss_pred             CCCccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhc-CCceE--EeccchH-----HH
Confidence            35577999999998 6999999999999998 89999999   888888888887653 23333  2344332     23


Q ss_pred             HHHHhcCCCccEEEEecccc
Q 028656          124 IKEAIEGLDVGVLINNVGIS  143 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~  143 (206)
                      +.+...+  .|++||+.+..
T Consensus       220 l~~~l~~--aDiIINaTp~G  237 (315)
T 3tnl_A          220 LRKEIAE--SVIFTNATGVG  237 (315)
T ss_dssp             HHHHHHT--CSEEEECSSTT
T ss_pred             HHhhhcC--CCEEEECccCC
Confidence            3344454  44999987654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=98.45  E-value=1.2e-06  Score=71.25  Aligned_cols=80  Identities=21%  Similarity=0.307  Sum_probs=57.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||++|+|+++++.+...|++|++++|++++++.+. ++   + ..    ..+|.+++ ++..+.+.+..++ 
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~-~~---g-~~----~~~d~~~~-~~~~~~~~~~~~~-  237 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFR-SI---G-GE----VFIDFTKE-KDIVGAVLKATDG-  237 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHH-HT---T-CC----EEEETTTC-SCHHHHHHHHHTS-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHH-Hc---C-Cc----eEEecCcc-HhHHHHHHHHhCC-
Confidence            5889999999999999999999999999999999988765432 22   1 12    12476632 1233444444444 


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++|+|+|.
T Consensus       238 ~~D~vi~~~g~  248 (347)
T 2hcy_A          238 GAHGVINVSVS  248 (347)
T ss_dssp             CEEEEEECSSC
T ss_pred             CCCEEEECCCc
Confidence            68899999984

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=98.44  E-value=1.6e-06  Score=70.46  Aligned_cols=79  Identities=14%  Similarity=0.243  Sum_probs=58.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||++|+|...++.+...|++|+.+++++++++.+. ++   + ...    .+|..+.  +..+.+.+..++.
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~---g-a~~----~~d~~~~--~~~~~~~~~~~~~  234 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-AL---G-ADE----TVNYTHP--DWPKEVRRLTGGK  234 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH---T-CSE----EEETTST--THHHHHHHHTTTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hc---C-CCE----EEcCCcc--cHHHHHHHHhCCC
Confidence            5889999999999999999999999999999999988776553 22   2 221    2466554  3445555555443


Q ss_pred             CccEEEEecc
Q 028656          132 DVGVLINNVG  141 (206)
Q Consensus       132 ~id~lvnnAg  141 (206)
                      .+|++|+|+|
T Consensus       235 ~~d~vi~~~g  244 (343)
T 2eih_A          235 GADKVVDHTG  244 (343)
T ss_dssp             CEEEEEESSC
T ss_pred             CceEEEECCC
Confidence            5889999998

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.41  E-value=3.6e-07  Score=77.06  Aligned_cols=78  Identities=13%  Similarity=0.246  Sum_probs=56.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      ++++++|+| +|++|+++++.|++.|++|++++|+.++.+++.+++      ..+..+.+|+++.  +.+   .+.+.  
T Consensus         2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~------~~~~~~~~Dv~d~--~~l---~~~l~--   67 (450)
T 1ff9_A            2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV------QHSTPISLDVNDD--AAL---DAEVA--   67 (450)
T ss_dssp             CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTC------TTEEEEECCTTCH--HHH---HHHHT--
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhc------CCceEEEeecCCH--HHH---HHHHc--
Confidence            368899998 799999999999999999999999987765543322      1255677888864  222   23334  


Q ss_pred             CccEEEEecccc
Q 028656          132 DVGVLINNVGIS  143 (206)
Q Consensus       132 ~id~lvnnAg~~  143 (206)
                      ++|++|||++..
T Consensus        68 ~~DvVIn~a~~~   79 (450)
T 1ff9_A           68 KHDLVISLIPYT   79 (450)
T ss_dssp             TSSEEEECCC--
T ss_pred             CCcEEEECCccc
Confidence            466999999864

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.41  E-value=5.6e-07  Score=70.92  Aligned_cols=78  Identities=14%  Similarity=0.264  Sum_probs=57.0

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      .++++|+++|+|+ ||+|+++++.|++.|++|++++|+.++.+++.+++...  . .+     +..+. ++    +.+  
T Consensus       115 ~~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~--~-~~-----~~~~~-~~----~~~--  178 (271)
T 1nyt_A          115 FIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT--G-SI-----QALSM-DE----LEG--  178 (271)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG--S-SE-----EECCS-GG----GTT--
T ss_pred             cCcCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhcc--C-Ce-----eEecH-HH----hcc--
Confidence            3456999999998 69999999999999999999999999888887766431  1 22     22222 11    111  


Q ss_pred             cCCCccEEEEeccccC
Q 028656          129 EGLDVGVLINNVGISY  144 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~  144 (206)
                      +  +.|++|||+|...
T Consensus       179 ~--~~DivVn~t~~~~  192 (271)
T 1nyt_A          179 H--EFDLIINATSSGI  192 (271)
T ss_dssp             C--CCSEEEECCSCGG
T ss_pred             C--CCCEEEECCCCCC
Confidence            3  4669999998764

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=98.39  E-value=2e-06  Score=69.29  Aligned_cols=80  Identities=20%  Similarity=0.304  Sum_probs=60.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||+|++|...++.+...|++|+++++++++++.+. ++   + ...    ..|..+.  +..+.+.+..++.
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~---G-a~~----~~~~~~~--~~~~~~~~~~~~~  208 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK-AL---G-AWE----TIDYSHE--DVAKRVLELTDGK  208 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HH---T-CSE----EEETTTS--CHHHHHHHHTTTC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc---C-CCE----EEeCCCc--cHHHHHHHHhCCC
Confidence            5899999999999999999999999999999999988876543 22   2 221    2355544  4556666666655


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++++|+|.
T Consensus       209 g~Dvvid~~g~  219 (325)
T 3jyn_A          209 KCPVVYDGVGQ  219 (325)
T ss_dssp             CEEEEEESSCG
T ss_pred             CceEEEECCCh
Confidence            68899999985

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.38  E-value=1.1e-06  Score=69.58  Aligned_cols=81  Identities=17%  Similarity=0.345  Sum_probs=59.8

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      ++++|+++|+|+ ||+|+++++.|++.|+ +|.+++|+.++.+++++++...+++..+...  +.. +       +.+..
T Consensus       124 ~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~--~~~-~-------l~~~l  192 (283)
T 3jyo_A          124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGV--DAR-G-------IEDVI  192 (283)
T ss_dssp             TCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEE--CST-T-------HHHHH
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEc--CHH-H-------HHHHH
Confidence            467999999998 7999999999999998 6999999999999999988776544443322  211 1       11222


Q ss_pred             cCCCccEEEEecccc
Q 028656          129 EGLDVGVLINNVGIS  143 (206)
Q Consensus       129 ~~~~id~lvnnAg~~  143 (206)
                      .+  .|++||+....
T Consensus       193 ~~--~DiVInaTp~G  205 (283)
T 3jyo_A          193 AA--ADGVVNATPMG  205 (283)
T ss_dssp             HH--SSEEEECSSTT
T ss_pred             hc--CCEEEECCCCC
Confidence            32  34999987653

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=98.38  E-value=1.2e-06  Score=70.81  Aligned_cols=80  Identities=19%  Similarity=0.307  Sum_probs=59.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||+||+|...++.+...|++|+.+++++++++.+. ++    +...    ..|..++  +..+.+.+..++.
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~----ga~~----~~~~~~~--~~~~~~~~~~~~~  216 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAK-EY----GAEY----LINASKE--DILRQVLKFTNGK  216 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HT----TCSE----EEETTTS--CHHHHHHHHTTTS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc----CCcE----EEeCCCc--hHHHHHHHHhCCC
Confidence            5889999999999999999999999999999999988776432 22    2221    2354443  4556666666555


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++++|+|.
T Consensus       217 g~D~vid~~g~  227 (334)
T 3qwb_A          217 GVDASFDSVGK  227 (334)
T ss_dssp             CEEEEEECCGG
T ss_pred             CceEEEECCCh
Confidence            68899999984

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=98.37  E-value=1e-06  Score=71.48  Aligned_cols=81  Identities=12%  Similarity=0.176  Sum_probs=55.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||+||+|...++.+...|++|+++++++++++.+.+++    +..    ..+|..+.. +..+.+.+..+ .
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~----g~~----~~~d~~~~~-~~~~~~~~~~~-~  224 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKF----GFD----DAFNYKEES-DLTAALKRCFP-N  224 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTS----CCS----EEEETTSCS-CSHHHHHHHCT-T
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----CCc----eEEecCCHH-HHHHHHHHHhC-C
Confidence            5899999999999999999999999999999999988776554332    112    123655420 11122332223 2


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++++|+|.
T Consensus       225 ~~d~vi~~~g~  235 (345)
T 2j3h_A          225 GIDIYFENVGG  235 (345)
T ss_dssp             CEEEEEESSCH
T ss_pred             CCcEEEECCCH
Confidence            57799999875

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=98.36  E-value=2.5e-06  Score=69.38  Aligned_cols=80  Identities=16%  Similarity=0.169  Sum_probs=57.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHC-CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc-
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE-  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-  129 (206)
                      .|++++|+||++|+|+..++.+... |++|+++++++++++.+. ++   + ...    .+|..+.  +..+.+.+..+ 
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~-~~---g-~~~----~~~~~~~--~~~~~~~~~~~~  238 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RA---G-ADY----VINASMQ--DPLAEIRRITES  238 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HH---T-CSE----EEETTTS--CHHHHHHHHTTT
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hh---C-CCE----EecCCCc--cHHHHHHHHhcC
Confidence            4889999999999999999999998 999999999988776543 22   2 221    2355543  33444554443 


Q ss_pred             CCCccEEEEecccc
Q 028656          130 GLDVGVLINNVGIS  143 (206)
Q Consensus       130 ~~~id~lvnnAg~~  143 (206)
                      + .+|++|+|+|..
T Consensus       239 ~-~~d~vi~~~g~~  251 (347)
T 1jvb_A          239 K-GVDAVIDLNNSE  251 (347)
T ss_dssp             S-CEEEEEESCCCH
T ss_pred             C-CceEEEECCCCH
Confidence            3 578999999853

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=98.36  E-value=2.2e-06  Score=69.49  Aligned_cols=80  Identities=23%  Similarity=0.254  Sum_probs=60.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||++++|...++.+...|++|+++++++++++.+.+ +   + ...    ..|..+.  +..+.+.+..++.
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-l---g-a~~----~~~~~~~--~~~~~~~~~~~~~  212 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR-L---G-AAY----VIDTSTA--PLYETVMELTNGI  212 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-H---T-CSE----EEETTTS--CHHHHHHHHTTTS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-C---C-CcE----EEeCCcc--cHHHHHHHHhCCC
Confidence            58899999999999999998888899999999999988765543 2   2 221    1355443  4556666666655


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++++|+|.
T Consensus       213 g~Dvvid~~g~  223 (340)
T 3gms_A          213 GADAAIDSIGG  223 (340)
T ss_dssp             CEEEEEESSCH
T ss_pred             CCcEEEECCCC
Confidence            68899999884

>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*

Probab=98.35  E-value=3.6e-07  Score=66.16  Aligned_cols=76  Identities=12%  Similarity=0.072  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHHCCCcEEEEEcChhhHH---HHHHHHHHhcCCceEEEEEEecCCCc----hHHHHHHHHHhcCCCccEE
Q 028656           64 GIGKSFAFQLAKTGLNLVLVGRNPDKLK---DVSDSIQAKYAKTQIKSVVVDFSGDL----DEGVERIKEAIEGLDVGVL  136 (206)
Q Consensus        64 giG~~~a~~l~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~~~~~~~~~id~l  136 (206)
                      -++.+.++.|++.|++|++..|+.+...   +..+.+++.  +.+...+.+|+++..    ++.++.+.+.+|+ |  ++
T Consensus        27 ~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~--G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-d--VL  101 (157)
T 3gxh_A           27 LPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQA--GMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-D--VL  101 (157)
T ss_dssp             CCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHT--TCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-C--EE
T ss_pred             CCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHc--CCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-C--EE
Confidence            4678999999999999999988764432   234444443  567788899998762    4455666666665 5  99


Q ss_pred             EEeccccC
Q 028656          137 INNVGISY  144 (206)
Q Consensus       137 vnnAg~~~  144 (206)
                      |||||+..
T Consensus       102 VnnAgg~r  109 (157)
T 3gxh_A          102 VHCLANYR  109 (157)
T ss_dssp             EECSBSHH
T ss_pred             EECCCCCC
Confidence            99999753

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=98.34  E-value=3.3e-06  Score=68.83  Aligned_cols=79  Identities=16%  Similarity=0.266  Sum_probs=58.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||+||+|...++.+...|++|+++++++++++.+.+ +   + ...    ..|..+.  +..+.+.+..+ .
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-l---G-a~~----~~~~~~~--~~~~~~~~~~~-~  234 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER-L---G-AKR----GINYRSE--DFAAVIKAETG-Q  234 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-H---T-CSE----EEETTTS--CHHHHHHHHHS-S
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-c---C-CCE----EEeCCch--HHHHHHHHHhC-C
Confidence            58899999999999999999999999999999999988765443 2   2 221    1355544  34455555443 3


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++++|+|.
T Consensus       235 g~Dvvid~~g~  245 (353)
T 4dup_A          235 GVDIILDMIGA  245 (353)
T ss_dssp             CEEEEEESCCG
T ss_pred             CceEEEECCCH
Confidence            68899999984

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=98.31  E-value=5.1e-06  Score=67.41  Aligned_cols=79  Identities=19%  Similarity=0.299  Sum_probs=58.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||+||+|...++.+...|++|+++++++++.+.+.+ +    +...+    .|.. +  +..+.+.+..++.
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~----ga~~v----~~~~-~--~~~~~v~~~~~~~  226 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS-V----GADIV----LPLE-E--GWAKAVREATGGA  226 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-H----TCSEE----EESS-T--THHHHHHHHTTTS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-c----CCcEE----ecCc-h--hHHHHHHHHhCCC
Confidence            58999999999999999999999999999999999988764433 2    22222    2333 2  4556666666655


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++++|+|.
T Consensus       227 g~Dvvid~~g~  237 (342)
T 4eye_A          227 GVDMVVDPIGG  237 (342)
T ss_dssp             CEEEEEESCC-
T ss_pred             CceEEEECCch
Confidence            68899999984

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.24  E-value=2e-06  Score=72.84  Aligned_cols=80  Identities=16%  Similarity=0.271  Sum_probs=56.3

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHC-CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      .++++++++|+|+ ||+|+++++.|++. |++|++++|+.++.+++.+.     .+  +..+.+|+.+.  +.+   .+.
T Consensus        19 ~~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~-----~~--~~~~~~D~~d~--~~l---~~~   85 (467)
T 2axq_A           19 GRHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP-----SG--SKAISLDVTDD--SAL---DKV   85 (467)
T ss_dssp             ----CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG-----GT--CEEEECCTTCH--HHH---HHH
T ss_pred             cCCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh-----cC--CcEEEEecCCH--HHH---HHH
Confidence            3466889999998 99999999999998 78999999998887765543     12  34456777764  222   233


Q ss_pred             hcCCCccEEEEecccc
Q 028656          128 IEGLDVGVLINNVGIS  143 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~  143 (206)
                      +.+  +|++||+++..
T Consensus        86 l~~--~DvVIn~tp~~   99 (467)
T 2axq_A           86 LAD--NDVVISLIPYT   99 (467)
T ss_dssp             HHT--SSEEEECSCGG
T ss_pred             HcC--CCEEEECCchh
Confidence            343  55999999865

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=98.21  E-value=7.6e-06  Score=65.66  Aligned_cols=84  Identities=17%  Similarity=0.304  Sum_probs=59.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC---hhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN---PDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERI  124 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  124 (206)
                      +++++|+++|+|+ ||.|+++++.|++.|+ +|.++.|+   .++.+++.+++.... +..+..  .+..+.     +..
T Consensus       144 ~~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~-~~~v~~--~~~~~l-----~~~  214 (312)
T 3t4e_A          144 FDMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENT-DCVVTV--TDLADQ-----HAF  214 (312)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHS-SCEEEE--EETTCH-----HHH
T ss_pred             CCcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhcc-CcceEE--echHhh-----hhh
Confidence            5577999999998 7999999999999998 89999999   888888888887643 232322  333321     112


Q ss_pred             HHHhcCCCccEEEEecccc
Q 028656          125 KEAIEGLDVGVLINNVGIS  143 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~  143 (206)
                      .+...+  .|++||+.+..
T Consensus       215 ~~~l~~--~DiIINaTp~G  231 (312)
T 3t4e_A          215 TEALAS--ADILTNGTKVG  231 (312)
T ss_dssp             HHHHHH--CSEEEECSSTT
T ss_pred             HhhccC--ceEEEECCcCC
Confidence            223333  34999987654

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.17  E-value=6.6e-06  Score=64.77  Aligned_cols=78  Identities=21%  Similarity=0.305  Sum_probs=56.4

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      .++++|+++|+|+ ||+|+++++.|++.|++|++.+|+.++.+++.+++... .  .+..  .|..+-     .   +  
T Consensus       115 ~~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~-~--~~~~--~~~~~~-----~---~--  178 (272)
T 1p77_A          115 WLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY-G--NIQA--VSMDSI-----P---L--  178 (272)
T ss_dssp             CCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG-S--CEEE--EEGGGC-----C---C--
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcccc-C--CeEE--eeHHHh-----c---c--
Confidence            3567899999998 79999999999999999999999999988888776432 1  2222  232110     0   0  


Q ss_pred             cCCCccEEEEeccccC
Q 028656          129 EGLDVGVLINNVGISY  144 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~  144 (206)
                      +  +.|++||+++...
T Consensus       179 ~--~~DivIn~t~~~~  192 (272)
T 1p77_A          179 Q--TYDLVINATSAGL  192 (272)
T ss_dssp             S--CCSEEEECCCC--
T ss_pred             C--CCCEEEECCCCCC
Confidence            2  4569999998764

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=98.13  E-value=1.1e-05  Score=65.63  Aligned_cols=79  Identities=10%  Similarity=0.117  Sum_probs=56.5

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      +++++|+||+|++|...++.+...|++|+++++++++++.+. ++   + ...    ..|..++  +..+.+.+..++..
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~~---G-a~~----~~~~~~~--~~~~~v~~~~~~~g  233 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK-DI---G-AAH----VLNEKAP--DFEATLREVMKAEQ  233 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHH-HH---T-CSE----EEETTST--THHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc---C-CCE----EEECCcH--HHHHHHHHHhcCCC
Confidence            489999999999999999888889999999999998876553 22   2 221    1344443  44455555544324


Q ss_pred             ccEEEEeccc
Q 028656          133 VGVLINNVGI  142 (206)
Q Consensus       133 id~lvnnAg~  142 (206)
                      +|++++++|.
T Consensus       234 ~D~vid~~g~  243 (349)
T 3pi7_A          234 PRIFLDAVTG  243 (349)
T ss_dssp             CCEEEESSCH
T ss_pred             CcEEEECCCC
Confidence            6699999873

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=98.12  E-value=2.2e-05  Score=63.68  Aligned_cols=77  Identities=17%  Similarity=0.236  Sum_probs=55.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||+|++|...++.+...|++|+.+ +++++++.+ +++     +...    +| .++  +..+.+.+..++.
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~-~~l-----Ga~~----i~-~~~--~~~~~~~~~~~~~  215 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYV-RDL-----GATP----ID-ASR--EPEDYAAEHTAGQ  215 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHH-HHH-----TSEE----EE-TTS--CHHHHHHHHHTTS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHH-HHc-----CCCE----ec-cCC--CHHHHHHHHhcCC
Confidence            58899999999999999999999999999999 777765543 222     2221    44 333  3345555555554


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++++++|.
T Consensus       216 g~D~vid~~g~  226 (343)
T 3gaz_A          216 GFDLVYDTLGG  226 (343)
T ss_dssp             CEEEEEESSCT
T ss_pred             CceEEEECCCc
Confidence            68899999883

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.11  E-value=1.6e-05  Score=55.90  Aligned_cols=74  Identities=15%  Similarity=0.238  Sum_probs=53.3

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      .++++|+|+ |.+|+++++.|.++|++|+++++++++.++..+.      +  ...+..|.++.  +..++    .+-.+
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~------~--~~~~~gd~~~~--~~l~~----~~~~~   70 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE------G--FDAVIADPTDE--SFYRS----LDLEG   70 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT------T--CEEEECCTTCH--HHHHH----SCCTT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC------C--CcEEECCCCCH--HHHHh----CCccc
Confidence            567999998 6799999999999999999999998876654431      2  35567788765  33322    22224


Q ss_pred             ccEEEEecc
Q 028656          133 VGVLINNVG  141 (206)
Q Consensus       133 id~lvnnAg  141 (206)
                      .|.+|.+.+
T Consensus        71 ~d~vi~~~~   79 (141)
T 3llv_A           71 VSAVLITGS   79 (141)
T ss_dssp             CSEEEECCS
T ss_pred             CCEEEEecC
Confidence            668887765

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=98.10  E-value=1.4e-05  Score=65.41  Aligned_cols=79  Identities=16%  Similarity=0.123  Sum_probs=55.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||+|++|...++.+...|++|+++++++++++.+.+    .+ ...    ..|..++  +..+.+.+..+ .
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~G-a~~----~~~~~~~--~~~~~~~~~~~-~  230 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LG-CDR----PINYKTE--PVGTVLKQEYP-E  230 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TT-CSE----EEETTTS--CHHHHHHHHCT-T
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cC-CcE----EEecCCh--hHHHHHHHhcC-C
Confidence            48899999999999999999999999999999999877665432    22 221    1344433  33344444333 2


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++++|+|.
T Consensus       231 g~D~vid~~g~  241 (362)
T 2c0c_A          231 GVDVVYESVGG  241 (362)
T ss_dssp             CEEEEEECSCT
T ss_pred             CCCEEEECCCH
Confidence            57899999874

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.10  E-value=1.4e-05  Score=63.25  Aligned_cols=50  Identities=16%  Similarity=0.240  Sum_probs=44.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQA   99 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~   99 (206)
                      .++++|+++|+|+ ||+|+++++.|++.|+ +|.+.+|+.++.+++.+++..
T Consensus       122 ~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~  172 (281)
T 3o8q_A          122 VLLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAA  172 (281)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGG
T ss_pred             CCccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhc
Confidence            4567999999998 6999999999999996 999999999999988888754

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.08  E-value=5.2e-06  Score=58.23  Aligned_cols=76  Identities=18%  Similarity=0.278  Sum_probs=51.0

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +++++++|+|+ |++|+.+++.|.+.|++|+++++++++.+...    ..  +.  ..+..|.++.  +..++.  ..+ 
T Consensus         4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~----~~--~~--~~~~~d~~~~--~~l~~~--~~~-   69 (144)
T 2hmt_A            4 IKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA----SY--AT--HAVIANATEE--NELLSL--GIR-   69 (144)
T ss_dssp             --CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT----TT--CS--EEEECCTTCH--HHHHTT--TGG-
T ss_pred             CcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----Hh--CC--EEEEeCCCCH--HHHHhc--CCC-
Confidence            34678999998 99999999999999999999999886654322    11  22  3455676643  222211  133 


Q ss_pred             CCccEEEEecc
Q 028656          131 LDVGVLINNVG  141 (206)
Q Consensus       131 ~~id~lvnnAg  141 (206)
                       +.|++|++++
T Consensus        70 -~~d~vi~~~~   79 (144)
T 2hmt_A           70 -NFEYVIVAIG   79 (144)
T ss_dssp             -GCSEEEECCC
T ss_pred             -CCCEEEECCC
Confidence             3559998876

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=98.08  E-value=2.9e-05  Score=62.76  Aligned_cols=121  Identities=18%  Similarity=0.130  Sum_probs=77.2

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC-------cEEEEEcC----hhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGL-------NLVLVGRN----PDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGV  121 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~-------~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  121 (206)
                      ..+++||||+|.+|.+++..++.+|.       +|++.+++    .++++....++....... .  .+...+++     
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-~--~~i~~~~~-----   76 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-L--AGMTAHAD-----   76 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-E--EEEEEESS-----
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-c--CcEEEecC-----
Confidence            35799999999999999999999885       79999998    665665555665421111 1  12222222     


Q ss_pred             HHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccc
Q 028656          122 ERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE  196 (206)
Q Consensus       122 ~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~  196 (206)
                        ..+.+.+  .|++|+.||.....     ..+.   .+.+..|+.....+.+.+...-  ...++ ++++|...
T Consensus        77 --~~~al~~--aD~Vi~~ag~~~~~-----g~~r---~dl~~~N~~i~~~i~~~i~~~~--~p~a~-ii~~SNPv  136 (329)
T 1b8p_A           77 --PMTAFKD--ADVALLVGARPRGP-----GMER---KDLLEANAQIFTVQGKAIDAVA--SRNIK-VLVVGNPA  136 (329)
T ss_dssp             --HHHHTTT--CSEEEECCCCCCCT-----TCCH---HHHHHHHHHHHHHHHHHHHHHS--CTTCE-EEECSSSH
T ss_pred             --cHHHhCC--CCEEEEeCCCCCCC-----CCCH---HHHHHHHHHHHHHHHHHHHHhc--CCCeE-EEEccCch
Confidence              2233444  44999999975431     1232   3457889888887877764420  12345 88888733

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=98.00  E-value=9.6e-05  Score=59.63  Aligned_cols=115  Identities=17%  Similarity=0.269  Sum_probs=71.0

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .+++|+||+|.+|..++..|+++|  .+|++.+++++  +....++........+..    ..+.     ....+.+.+ 
T Consensus         9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~----~~~t-----~d~~~al~g-   76 (326)
T 1smk_A            9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDTGAVVRG----FLGQ-----QQLEAALTG-   76 (326)
T ss_dssp             EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEE----EESH-----HHHHHHHTT-
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccccceEEE----EeCC-----CCHHHHcCC-
Confidence            479999999999999999999988  78999998876  333334433211112211    1111     233344554 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                       .|++|++||......     .+.   ...+..|+.++..+.+.+.+    ..... +|+++|
T Consensus        77 -aDvVi~~ag~~~~~g-----~~r---~dl~~~N~~~~~~i~~~i~~----~~p~~-~viv~S  125 (326)
T 1smk_A           77 -MDLIIVPAGVPRKPG-----MTR---DDLFKINAGIVKTLCEGIAK----CCPRA-IVNLIS  125 (326)
T ss_dssp             -CSEEEECCCCCCCSS-----CCC---SHHHHHHHHHHHHHHHHHHH----HCTTS-EEEECC
T ss_pred             -CCEEEEcCCcCCCCC-----CCH---HHHHHHHHHHHHHHHHHHHh----hCCCe-EEEEEC
Confidence             449999999754321     122   23477888888888777654    33344 555555

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=97.99  E-value=1.2e-05  Score=67.62  Aligned_cols=87  Identities=18%  Similarity=0.167  Sum_probs=56.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC-----------chH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD-----------LDE  119 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----------~~~  119 (206)
                      ..|++|+|+||+||+|...++.+...|++|+++++++++++.+.    +.+.+..+...+.|..+.           .++
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~----~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~  294 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVR----ALGCDLVINRAELGITDDIADDPRRVVETGRK  294 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----hcCCCEEEecccccccccccccccccchhhhH
Confidence            35899999999999999999888899999999999888776542    222222111111111111           012


Q ss_pred             HHHHHHHHhcCCCccEEEEeccc
Q 028656          120 GVERIKEAIEGLDVGVLINNVGI  142 (206)
Q Consensus       120 ~~~~~~~~~~~~~id~lvnnAg~  142 (206)
                      ..+.+.+..++ .+|++++++|.
T Consensus       295 ~~~~v~~~~g~-g~Dvvid~~G~  316 (447)
T 4a0s_A          295 LAKLVVEKAGR-EPDIVFEHTGR  316 (447)
T ss_dssp             HHHHHHHHHSS-CCSEEEECSCH
T ss_pred             HHHHHHHHhCC-CceEEEECCCc
Confidence            24556665543 57799999884

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.98  E-value=2e-05  Score=61.17  Aligned_cols=60  Identities=25%  Similarity=0.339  Sum_probs=50.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh-------------------hhHHHHHHHHHHhcCCceEEEE
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP-------------------DKLKDVSDSIQAKYAKTQIKSV  109 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~  109 (206)
                      ++++++|+|.|+ ||+|.++++.|++.|. ++.+++++.                   ++.+.+++.+.+.+++.++..+
T Consensus        28 ~l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  106 (249)
T 1jw9_B           28 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV  106 (249)
T ss_dssp             HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence            467899999997 6999999999999997 899999987                   7888888888887777666554


Q ss_pred             E
Q 028656          110 V  110 (206)
Q Consensus       110 ~  110 (206)
                      .
T Consensus       107 ~  107 (249)
T 1jw9_B          107 N  107 (249)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=97.96  E-value=5.4e-05  Score=61.39  Aligned_cols=78  Identities=10%  Similarity=0.106  Sum_probs=55.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||+|++|...++.+...|++|+.+++++++++.+.+ +   + ...+    .|..+   +..+.+.+. ++.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-l---G-a~~v----i~~~~---~~~~~~~~~-~~~  216 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK-M---G-ADIV----LNHKE---SLLNQFKTQ-GIE  216 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH-H---T-CSEE----ECTTS---CHHHHHHHH-TCC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-c---C-CcEE----EECCc---cHHHHHHHh-CCC
Confidence            68999999999999999999888999999999999887665443 2   2 2211    23332   233445444 433


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++++++|.
T Consensus       217 g~Dvv~d~~g~  227 (346)
T 3fbg_A          217 LVDYVFCTFNT  227 (346)
T ss_dssp             CEEEEEESSCH
T ss_pred             CccEEEECCCc
Confidence            57899998874

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=97.94  E-value=0.0002  Score=57.47  Aligned_cols=115  Identities=21%  Similarity=0.288  Sum_probs=71.1

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC--cEEEEEc--ChhhHHHHHHHHHHhcC--CceEEEEEEecCCCchHHHHHHHHHh
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL--NLVLVGR--NPDKLKDVSDSIQAKYA--KTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~--~V~~~~r--~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      +++||||+|.+|..++..++.+|.  ++++.++  +.++++....++....+  +..+.....+  |+       ..+.+
T Consensus         2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~--d~-------l~~al   72 (313)
T 1hye_A            2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES--DE-------NLRII   72 (313)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE--TT-------CGGGG
T ss_pred             EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC--cc-------hHHHh
Confidence            589999999999999999998874  6888998  66656554445543211  1122222222  11       11123


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      .  +.|++|+.||.....     ..+.   ...++.|+.++..+.+++..    .. .+ +|+++|
T Consensus        73 ~--gaD~Vi~~Ag~~~~~-----g~~r---~dl~~~N~~i~~~i~~~i~~----~~-~~-~vlv~S  122 (313)
T 1hye_A           73 D--ESDVVIITSGVPRKE-----GMSR---MDLAKTNAKIVGKYAKKIAE----IC-DT-KIFVIT  122 (313)
T ss_dssp             T--TCSEEEECCSCCCCT-----TCCH---HHHHHHHHHHHHHHHHHHHH----HC-CC-EEEECS
T ss_pred             C--CCCEEEECCCCCCCC-----CCcH---HHHHHHHHHHHHHHHHHHHH----hC-Ce-EEEEec
Confidence            3  355999999975421     1222   34588899988888888654    34 44 555544

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.91  E-value=1.7e-05  Score=63.30  Aligned_cols=78  Identities=15%  Similarity=0.266  Sum_probs=56.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      ++++++++|+|+ ||+|+++++.|++.|+ +|++.+|+.++.+++.+++....  ..+    .+        .+.+.+..
T Consensus       138 ~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~--~~~----~~--------~~~~~~~~  202 (297)
T 2egg_A          138 TLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERR--SAY----FS--------LAEAETRL  202 (297)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSS--CCE----EC--------HHHHHHTG
T ss_pred             CCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhcc--Cce----ee--------HHHHHhhh
Confidence            466899999998 6999999999999998 99999999988887776652210  011    11        12334444


Q ss_pred             cCCCccEEEEeccccC
Q 028656          129 EGLDVGVLINNVGISY  144 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~  144 (206)
                      ++  .|++||+.+...
T Consensus       203 ~~--aDivIn~t~~~~  216 (297)
T 2egg_A          203 AE--YDIIINTTSVGM  216 (297)
T ss_dssp             GG--CSEEEECSCTTC
T ss_pred             cc--CCEEEECCCCCC
Confidence            54  459999997654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.90  E-value=5.5e-05  Score=61.89  Aligned_cols=77  Identities=16%  Similarity=0.221  Sum_probs=54.2

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      +++++++|+|+ ||+|++.++.+...|++|++++|++++++.+.+....     .+.   ++..+.     +.+.+.+.+
T Consensus       165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~-----~~~---~~~~~~-----~~~~~~~~~  230 (361)
T 1pjc_A          165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVE---LLYSNS-----AEIETAVAE  230 (361)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSE---EEECCH-----HHHHHHHHT
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc-----eeE---eeeCCH-----HHHHHHHcC
Confidence            56799999999 9999999999999999999999999888776544321     111   111221     123333444


Q ss_pred             CCccEEEEecccc
Q 028656          131 LDVGVLINNVGIS  143 (206)
Q Consensus       131 ~~id~lvnnAg~~  143 (206)
                        .|++||++|..
T Consensus       231 --~DvVI~~~~~~  241 (361)
T 1pjc_A          231 --ADLLIGAVLVP  241 (361)
T ss_dssp             --CSEEEECCCCT
T ss_pred             --CCEEEECCCcC
Confidence              45999999864

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.89  E-value=7.6e-05  Score=60.54  Aligned_cols=79  Identities=14%  Similarity=0.181  Sum_probs=56.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|+|+ |++|...++.+...|+ +|+.+++++++++.+. ++   + ...+    .|..++  +..+.+.+..++
T Consensus       167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~~---G-a~~~----~~~~~~--~~~~~v~~~~~g  234 (348)
T 2d8a_A          167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK-KV---G-ADYV----INPFEE--DVVKEVMDITDG  234 (348)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH-HH---T-CSEE----ECTTTS--CHHHHHHHHTTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh---C-CCEE----ECCCCc--CHHHHHHHHcCC
Confidence            6899999999 9999999998888999 9999999987765443 22   1 2211    344433  344555555544


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                      ..+|++++++|.
T Consensus       235 ~g~D~vid~~g~  246 (348)
T 2d8a_A          235 NGVDVFLEFSGA  246 (348)
T ss_dssp             SCEEEEEECSCC
T ss_pred             CCCCEEEECCCC
Confidence            457899999874

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.88  E-value=0.00036  Score=55.65  Aligned_cols=113  Identities=13%  Similarity=0.168  Sum_probs=71.2

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC--cEEEEEc--ChhhHHHHHHHHHHhcC-CceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL--NLVLVGR--NPDKLKDVSDSIQAKYA-KTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~--~V~~~~r--~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      +++||||+|.+|.+++..++.+|.  ++++.++  +.++++....++..... ...+.... +  +.         +.+.
T Consensus         2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~~---------~a~~   69 (303)
T 1o6z_A            2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--GY---------EDTA   69 (303)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--CG---------GGGT
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--CH---------HHhC
Confidence            589999999999999999998875  6888999  77666655555544311 11122221 1  11         1233


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                        +.|++|+.||.....     ..+.+   ..+..|+.++..+.+.+..    ..... +|+++|
T Consensus        70 --~aDvVi~~ag~~~~~-----g~~r~---dl~~~N~~i~~~i~~~i~~----~~p~~-~viv~S  119 (303)
T 1o6z_A           70 --GSDVVVITAGIPRQP-----GQTRI---DLAGDNAPIMEDIQSSLDE----HNDDY-ISLTTS  119 (303)
T ss_dssp             --TCSEEEECCCCCCCT-----TCCHH---HHHHHHHHHHHHHHHHHHT----TCSCC-EEEECC
T ss_pred             --CCCEEEEcCCCCCCC-----CCCHH---HHHHHHHHHHHHHHHHHHH----HCCCc-EEEEeC
Confidence              355999999975432     12333   3578898888777777643    34344 555555

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.82  E-value=0.00014  Score=51.82  Aligned_cols=77  Identities=13%  Similarity=0.229  Sum_probs=50.2

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC-hhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      +++++|.|+ |.+|+.++++|.+.|++|++++++ .++.+.+.+..    + ..+.++..|.++.  +..++.  ...+ 
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~----~-~~~~~i~gd~~~~--~~l~~a--~i~~-   71 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL----G-DNADVIPGDSNDS--SVLKKA--GIDR-   71 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH----C-TTCEEEESCTTSH--HHHHHH--TTTT-
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh----c-CCCeEEEcCCCCH--HHHHHc--Chhh-
Confidence            567888886 899999999999999999999997 45554444332    1 1245667777654  222221  1333 


Q ss_pred             CccEEEEecc
Q 028656          132 DVGVLINNVG  141 (206)
Q Consensus       132 ~id~lvnnAg  141 (206)
                       .|.+|.+.+
T Consensus        72 -ad~vi~~~~   80 (153)
T 1id1_A           72 -CRAILALSD   80 (153)
T ss_dssp             -CSEEEECSS
T ss_pred             -CCEEEEecC
Confidence             347776643

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.82  E-value=7.8e-05  Score=60.29  Aligned_cols=77  Identities=22%  Similarity=0.268  Sum_probs=54.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+|+ +|+|...++.+...|++|+.+++++++++.+.    +.+ ...    .+|..++  +..+.+.+..+  
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~----~lG-a~~----~~d~~~~--~~~~~~~~~~~--  229 (339)
T 1rjw_A          164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK----ELG-ADL----VVNPLKE--DAAKFMKEKVG--  229 (339)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH----HTT-CSE----EECTTTS--CHHHHHHHHHS--
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----HCC-CCE----EecCCCc--cHHHHHHHHhC--
Confidence            4789999999 78999999999899999999999988776543    222 221    2455543  33344444333  


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++|+++|.
T Consensus       230 ~~d~vid~~g~  240 (339)
T 1rjw_A          230 GVHAAVVTAVS  240 (339)
T ss_dssp             SEEEEEESSCC
T ss_pred             CCCEEEECCCC
Confidence            47799999884

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=97.82  E-value=8.3e-05  Score=62.63  Aligned_cols=83  Identities=23%  Similarity=0.309  Sum_probs=58.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--------------
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--------------  116 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------------  116 (206)
                      ..|++|+|+||+|++|...++.+...|++|+++++++++++.+. ++   + ...+    +|..+.              
T Consensus       227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~-~l---G-a~~v----i~~~~~d~~~~~~~~~~~~~  297 (456)
T 3krt_A          227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICR-AM---G-AEAI----IDRNAEGYRFWKDENTQDPK  297 (456)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH---T-CCEE----EETTTTTCCSEEETTEECHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHH-hh---C-CcEE----EecCcCcccccccccccchH
Confidence            35899999999999999999888889999999999887766542 22   2 1211    232221              


Q ss_pred             -chHHHHHHHHHhcCCCccEEEEeccc
Q 028656          117 -LDEGVERIKEAIEGLDVGVLINNVGI  142 (206)
Q Consensus       117 -~~~~~~~~~~~~~~~~id~lvnnAg~  142 (206)
                       .++..+.+.+..++..+|++++++|.
T Consensus       298 ~~~~~~~~i~~~t~g~g~Dvvid~~G~  324 (456)
T 3krt_A          298 EWKRFGKRIRELTGGEDIDIVFEHPGR  324 (456)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEEECSCH
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEcCCc
Confidence             02334666666665568899999874

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=97.81  E-value=5.8e-05  Score=61.70  Aligned_cols=75  Identities=23%  Similarity=0.333  Sum_probs=51.2

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh---hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP---DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      ++|++++|+|+ ||+|...++.+...|++|+++++++   ++.+.+ +++     +..  .+  | .++..+   .+.+ 
T Consensus       179 ~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~-~~~-----ga~--~v--~-~~~~~~---~~~~-  242 (366)
T 2cdc_A          179 LNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVI-EET-----KTN--YY--N-SSNGYD---KLKD-  242 (366)
T ss_dssp             STTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHH-HHH-----TCE--EE--E-CTTCSH---HHHH-
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHH-HHh-----CCc--ee--c-hHHHHH---HHHH-
Confidence            45999999999 9999999999989999999999988   665432 222     221  12  4 322222   2322 


Q ss_pred             hcCCCccEEEEeccc
Q 028656          128 IEGLDVGVLINNVGI  142 (206)
Q Consensus       128 ~~~~~id~lvnnAg~  142 (206)
                      .++ .+|++|+++|.
T Consensus       243 ~~~-~~d~vid~~g~  256 (366)
T 2cdc_A          243 SVG-KFDVIIDATGA  256 (366)
T ss_dssp             HHC-CEEEEEECCCC
T ss_pred             hCC-CCCEEEECCCC
Confidence            222 47799999984

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=97.76  E-value=0.00023  Score=58.08  Aligned_cols=78  Identities=17%  Similarity=0.220  Sum_probs=56.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+| +|++|...++.+...|++|+++++++++++.+. ++   + ...+    .| .+. ++..+.+.+..++.
T Consensus       189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~l---G-a~~v----i~-~~~-~~~~~~v~~~~~g~  256 (363)
T 3uog_A          189 AGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRAF-AL---G-ADHG----IN-RLE-EDWVERVYALTGDR  256 (363)
T ss_dssp             TTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HH---T-CSEE----EE-TTT-SCHHHHHHHHHTTC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHHH-Hc---C-CCEE----Ec-CCc-ccHHHHHHHHhCCC
Confidence            588999999 789999999888889999999999988776532 22   2 2221    24 221 24456666666655


Q ss_pred             CccEEEEecc
Q 028656          132 DVGVLINNVG  141 (206)
Q Consensus       132 ~id~lvnnAg  141 (206)
                      .+|++++++|
T Consensus       257 g~D~vid~~g  266 (363)
T 3uog_A          257 GADHILEIAG  266 (363)
T ss_dssp             CEEEEEEETT
T ss_pred             CceEEEECCC
Confidence            6889999988

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.75  E-value=0.0002  Score=56.85  Aligned_cols=66  Identities=14%  Similarity=0.209  Sum_probs=54.2

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh------------------hhHHHHHHHHHHhcCCceEEEE
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP------------------DKLKDVSDSIQAKYAKTQIKSV  109 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~  109 (206)
                      -++++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                  .+.+.+++.+++.+++.++...
T Consensus        32 ~kL~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~  110 (292)
T 3h8v_A           32 EKIRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVH  110 (292)
T ss_dssp             CGGGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEe
Confidence            3467899999998 6999999999999996 899998875                  6778888888888888887777


Q ss_pred             EEecCC
Q 028656          110 VVDFSG  115 (206)
Q Consensus       110 ~~d~~~  115 (206)
                      ..++++
T Consensus       111 ~~~l~~  116 (292)
T 3h8v_A          111 NYNITT  116 (292)
T ss_dssp             CCCTTS
T ss_pred             cccCCc
Confidence            655543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.74  E-value=0.00013  Score=50.73  Aligned_cols=74  Identities=26%  Similarity=0.413  Sum_probs=49.3

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHH-hcCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEA-IEGL  131 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~  131 (206)
                      +.+++|+|+ |.+|..+++.|.+.|++|++++|++++.++..+..     +  ...+..|..+.  +.   +.+. ..  
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~-----~--~~~~~~d~~~~--~~---l~~~~~~--   68 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----D--ALVINGDCTKI--KT---LEDAGIE--   68 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----S--SEEEESCTTSH--HH---HHHTTTT--
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc-----C--cEEEEcCCCCH--HH---HHHcCcc--
Confidence            457889987 89999999999999999999999987765543221     2  23345565543  22   2211 23  


Q ss_pred             CccEEEEecc
Q 028656          132 DVGVLINNVG  141 (206)
Q Consensus       132 ~id~lvnnAg  141 (206)
                      +.|++|.+.+
T Consensus        69 ~~d~vi~~~~   78 (140)
T 1lss_A           69 DADMYIAVTG   78 (140)
T ss_dssp             TCSEEEECCS
T ss_pred             cCCEEEEeeC
Confidence            3558888853

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=97.74  E-value=0.00023  Score=58.03  Aligned_cols=83  Identities=22%  Similarity=0.336  Sum_probs=57.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCc-EEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLN-LVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|.|+ |++|...++.....|++ |+.+++++++++.+++ + .   +. +.....|.. +.++..+.+.+..++
T Consensus       179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-l-~---~~-~~~~~~~~~-~~~~~~~~v~~~t~g  250 (363)
T 3m6i_A          179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAKE-I-C---PE-VVTHKVERL-SAEESAKKIVESFGG  250 (363)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHH-H-C---TT-CEEEECCSC-CHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h-c---hh-ccccccccc-chHHHHHHHHHHhCC
Confidence            4889999998 99999988888889997 9999999888765443 2 1   12 222222321 224556777777765


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                      ..+|++++++|.
T Consensus       251 ~g~Dvvid~~g~  262 (363)
T 3m6i_A          251 IEPAVALECTGV  262 (363)
T ss_dssp             CCCSEEEECSCC
T ss_pred             CCCCEEEECCCC
Confidence            567899999873

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.73  E-value=7.9e-05  Score=58.60  Aligned_cols=50  Identities=16%  Similarity=0.250  Sum_probs=44.2

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQ   98 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~   98 (206)
                      ..++++|+++|+|+ ||.|+++++.|++.|+ +|.+.+|+.++.+++++++.
T Consensus       115 ~~~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~  165 (272)
T 3pwz_A          115 GEPLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELD  165 (272)
T ss_dssp             CCCCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHC
T ss_pred             CCCccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhc
Confidence            34577999999998 6999999999999996 99999999999888887763

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.69  E-value=0.00013  Score=59.97  Aligned_cols=45  Identities=20%  Similarity=0.177  Sum_probs=40.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~   95 (206)
                      .+.+++++|+|+ |++|+++++.+...|++|++.+|+.++++.+.+
T Consensus       165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~  209 (377)
T 2vhw_A          165 GVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDA  209 (377)
T ss_dssp             TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence            367999999999 999999999999999999999999988766544

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.68  E-value=0.00024  Score=57.68  Aligned_cols=79  Identities=24%  Similarity=0.220  Sum_probs=53.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC-CchHHHHHHHHHhc-
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG-DLDEGVERIKEAIE-  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~-  129 (206)
                      .|++++|+|+ |++|...++.+...|++|+++++++++++.+.    +.+ ...  .  .|..+ .  +..+++.+..+ 
T Consensus       168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~----~lG-a~~--~--~~~~~~~--~~~~~i~~~~~~  235 (352)
T 1e3j_A          168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK----NCG-ADV--T--LVVDPAK--EEESSIIERIRS  235 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH----HTT-CSE--E--EECCTTT--SCHHHHHHHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH----HhC-CCE--E--EcCcccc--cHHHHHHHHhcc
Confidence            4889999997 89999999888889999999999988766443    222 221  2  24332 2  22344544443 


Q ss_pred             --CCCccEEEEeccc
Q 028656          130 --GLDVGVLINNVGI  142 (206)
Q Consensus       130 --~~~id~lvnnAg~  142 (206)
                        +..+|++++++|.
T Consensus       236 ~~g~g~D~vid~~g~  250 (352)
T 1e3j_A          236 AIGDLPNVTIDCSGN  250 (352)
T ss_dssp             HSSSCCSEEEECSCC
T ss_pred             ccCCCCCEEEECCCC
Confidence              2246799999874

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.65  E-value=0.0001  Score=60.32  Aligned_cols=81  Identities=17%  Similarity=0.302  Sum_probs=53.3

Q ss_pred             CCcccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHH
Q 028656           45 PAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERI  124 (206)
Q Consensus        45 ~~~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  124 (206)
                      +.++++-+..+|+|.|| |++|+.+++.|++ ..+|.+.+++.++++++.+         ....+.+|+.|.     +.+
T Consensus         8 ~~~~~~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~---------~~~~~~~d~~d~-----~~l   71 (365)
T 3abi_A            8 HHHHIEGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKE---------FATPLKVDASNF-----DKL   71 (365)
T ss_dssp             --------CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTT---------TSEEEECCTTCH-----HHH
T ss_pred             ccccccCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhc---------cCCcEEEecCCH-----HHH
Confidence            34455555567999998 9999999998875 4789999999887765432         234567788765     444


Q ss_pred             HHHhcCCCccEEEEecccc
Q 028656          125 KEAIEGLDVGVLINNVGIS  143 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~  143 (206)
                      .+...+.|  ++||+++..
T Consensus        72 ~~~~~~~D--vVi~~~p~~   88 (365)
T 3abi_A           72 VEVMKEFE--LVIGALPGF   88 (365)
T ss_dssp             HHHHTTCS--EEEECCCGG
T ss_pred             HHHHhCCC--EEEEecCCc
Confidence            45555544  999988654

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=97.63  E-value=0.00016  Score=58.91  Aligned_cols=86  Identities=27%  Similarity=0.273  Sum_probs=53.8

Q ss_pred             CC-cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC-chHHHHHHHHHh-
Q 028656           52 YG-SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD-LDEGVERIKEAI-  128 (206)
Q Consensus        52 ~~-k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~-  128 (206)
                      .| ++++|+||+|++|...++.....|++|+.++++.+++++..+.+++.+ ...+  +  |..+. .++..+.+.+.. 
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lG-a~~v--i--~~~~~~~~~~~~~i~~~t~  240 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG-ATQV--I--TEDQNNSREFGPTIKEWIK  240 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHT-CSEE--E--EHHHHHCGGGHHHHHHHHH
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcC-CeEE--E--ecCccchHHHHHHHHHHhh
Confidence            47 899999999999999888777889999999887766433333343332 2221  2  22210 013334444443 


Q ss_pred             -cCCCccEEEEeccc
Q 028656          129 -EGLDVGVLINNVGI  142 (206)
Q Consensus       129 -~~~~id~lvnnAg~  142 (206)
                       ++..+|++++++|.
T Consensus       241 ~~~~g~Dvvid~~G~  255 (364)
T 1gu7_A          241 QSGGEAKLALNCVGG  255 (364)
T ss_dssp             HHTCCEEEEEESSCH
T ss_pred             ccCCCceEEEECCCc
Confidence             23357799998874

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=97.57  E-value=0.00039  Score=56.94  Aligned_cols=77  Identities=19%  Similarity=0.277  Sum_probs=51.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||+|++|...++.+...|++|+.++ +.++.+.+ +   +.+ ...+    .|..++  +..+.+.+. +  
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~-~---~lG-a~~v----~~~~~~--~~~~~~~~~-~--  247 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELV-R---KLG-ADDV----IDYKSG--SVEEQLKSL-K--  247 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHH-H---HTT-CSEE----EETTSS--CHHHHHHTS-C--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHH-H---HcC-CCEE----EECCch--HHHHHHhhc-C--
Confidence            589999999999999999988888999999888 45554433 2   222 2211    344443  333334332 3  


Q ss_pred             CccEEEEecccc
Q 028656          132 DVGVLINNVGIS  143 (206)
Q Consensus       132 ~id~lvnnAg~~  143 (206)
                      .+|++++++|..
T Consensus       248 g~D~vid~~g~~  259 (375)
T 2vn8_A          248 PFDFILDNVGGS  259 (375)
T ss_dssp             CBSEEEESSCTT
T ss_pred             CCCEEEECCCCh
Confidence            467999998864

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=97.57  E-value=0.00056  Score=56.61  Aligned_cols=79  Identities=16%  Similarity=0.270  Sum_probs=56.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++|+|+|+ |++|...++.....|+ +|+.+++++++++.+. ++   + ...+    .|..++  +..+.+.+..++
T Consensus       213 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~-~l---G-a~~v----i~~~~~--~~~~~i~~~t~g  280 (404)
T 3ip1_A          213 PGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNLAK-EL---G-ADHV----IDPTKE--NFVEAVLDYTNG  280 (404)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH-HH---T-CSEE----ECTTTS--CHHHHHHHHTTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hc---C-CCEE----EcCCCC--CHHHHHHHHhCC
Confidence            5889999998 8999998888888999 8999999987766432 23   2 2221    244333  455667666665


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                      ..+|+++.++|.
T Consensus       281 ~g~D~vid~~g~  292 (404)
T 3ip1_A          281 LGAKLFLEATGV  292 (404)
T ss_dssp             CCCSEEEECSSC
T ss_pred             CCCCEEEECCCC
Confidence            567799999874

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.56  E-value=7.9e-05  Score=52.62  Aligned_cols=44  Identities=18%  Similarity=0.325  Sum_probs=39.5

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~   97 (206)
                      +++++|.|+ |++|+.+++.|.+.|++|.+.+|+.++.+++.+++
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~   64 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY   64 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh
Confidence            889999997 89999999999999999999999999887766654

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=97.55  E-value=0.00023  Score=57.15  Aligned_cols=39  Identities=28%  Similarity=0.296  Sum_probs=35.3

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      +++|+||+|++|...++.+...|++|+.+++++++++.+
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~  190 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL  190 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            799999999999999998888999999999998877654

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=97.55  E-value=0.00012  Score=59.26  Aligned_cols=77  Identities=23%  Similarity=0.302  Sum_probs=52.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|+|+ |++|...++.+...|+ +|+.+++++++++.+.+ + .    ..    ..|..++  +..+.+.+..+ 
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~-l-a----~~----v~~~~~~--~~~~~~~~~~~-  229 (343)
T 2dq4_A          164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP-Y-A----DR----LVNPLEE--DLLEVVRRVTG-  229 (343)
T ss_dssp             TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT-T-C----SE----EECTTTS--CHHHHHHHHHS-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h-H----Hh----ccCcCcc--CHHHHHHHhcC-
Confidence            6899999999 9999999988888999 99999999877553322 1 1    11    1344432  33344444333 


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                      ..+|++++++|.
T Consensus       230 ~g~D~vid~~g~  241 (343)
T 2dq4_A          230 SGVEVLLEFSGN  241 (343)
T ss_dssp             SCEEEEEECSCC
T ss_pred             CCCCEEEECCCC
Confidence            257799999874

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.54  E-value=0.00031  Score=54.50  Aligned_cols=60  Identities=23%  Similarity=0.340  Sum_probs=47.9

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh-------------------hhHHHHHHHHHHhcCCceEEEE
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP-------------------DKLKDVSDSIQAKYAKTQIKSV  109 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~  109 (206)
                      ++++++|+|.|+ ||+|.++++.|++.|. ++.++|++.                   .+.+.+++.+++.+++.++...
T Consensus        25 ~l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  103 (251)
T 1zud_1           25 KLLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL  103 (251)
T ss_dssp             HHHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence            467899999998 6899999999999997 788887653                   5677788888887777666654


Q ss_pred             E
Q 028656          110 V  110 (206)
Q Consensus       110 ~  110 (206)
                      .
T Consensus       104 ~  104 (251)
T 1zud_1          104 Q  104 (251)
T ss_dssp             C
T ss_pred             e
Confidence            3

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=97.52  E-value=0.00049  Score=56.47  Aligned_cols=81  Identities=15%  Similarity=0.230  Sum_probs=55.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCC-CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC-CchHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG-DLDEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~  129 (206)
                      .|++++|+| +|++|...++.+...| ++|+.+++++++++.+.    +.+ ...+    .|... ..++..+.+.+..+
T Consensus       195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~----~lG-a~~v----i~~~~~~~~~~~~~v~~~~~  264 (380)
T 1vj0_A          195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE----EIG-ADLT----LNRRETSVEERRKAIMDITH  264 (380)
T ss_dssp             BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH----HTT-CSEE----EETTTSCHHHHHHHHHHHTT
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH----HcC-CcEE----EeccccCcchHHHHHHHHhC
Confidence            488999999 8999999998888899 59999999988766543    222 2211    23331 12344556666555


Q ss_pred             CCCccEEEEeccc
Q 028656          130 GLDVGVLINNVGI  142 (206)
Q Consensus       130 ~~~id~lvnnAg~  142 (206)
                      +..+|++++++|.
T Consensus       265 g~g~Dvvid~~g~  277 (380)
T 1vj0_A          265 GRGADFILEATGD  277 (380)
T ss_dssp             TSCEEEEEECSSC
T ss_pred             CCCCcEEEECCCC
Confidence            4457899999874

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=97.52  E-value=0.00024  Score=58.33  Aligned_cols=80  Identities=16%  Similarity=0.224  Sum_probs=55.6

Q ss_pred             CCcEEEEEC-CCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTG-PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItG-as~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|.| |+|++|...++.+...|++|+.+++++++++.+++    .+ ...+    .|..+.  +..+.+.+..++
T Consensus       170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~----lG-a~~~----~~~~~~--~~~~~v~~~t~~  238 (379)
T 3iup_A          170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKA----QG-AVHV----CNAASP--TFMQDLTEALVS  238 (379)
T ss_dssp             TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHH----TT-CSCE----EETTST--THHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh----CC-CcEE----EeCCCh--HHHHHHHHHhcC
Confidence            478899997 89999999888888889999999999887665432    22 2222    344433  444555555443


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                      ..+|++++++|.
T Consensus       239 ~g~d~v~d~~g~  250 (379)
T 3iup_A          239 TGATIAFDATGG  250 (379)
T ss_dssp             HCCCEEEESCEE
T ss_pred             CCceEEEECCCc
Confidence            346699999875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=97.51  E-value=0.00053  Score=56.10  Aligned_cols=80  Identities=21%  Similarity=0.279  Sum_probs=53.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|+|+ |++|...++.+...|+ +|+.+++++++++.++ ++   + ...+    .|..+..++..+.+.+..++
T Consensus       192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~l---G-a~~v----i~~~~~~~~~~~~~~~~~~~  261 (374)
T 1cdo_A          192 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VF---G-ATDF----VNPNDHSEPISQVLSKMTNG  261 (374)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT---T-CCEE----ECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-Hh---C-CceE----EeccccchhHHHHHHHHhCC
Confidence            5889999996 8999999988888999 7999999998876543 22   2 1211    34332111233444444444


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                       .+|++++++|.
T Consensus       262 -g~D~vid~~g~  272 (374)
T 1cdo_A          262 -GVDFSLECVGN  272 (374)
T ss_dssp             -CBSEEEECSCC
T ss_pred             -CCCEEEECCCC
Confidence             57799999874

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=97.50  E-value=0.00079  Score=54.77  Aligned_cols=79  Identities=23%  Similarity=0.326  Sum_probs=53.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHC-CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|+|+ |++|...++..... |++|+.+++++++++.+. ++   + ...+    .|..++   ..+.+.+..++
T Consensus       186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~-~l---G-a~~v----i~~~~~---~~~~v~~~~~g  252 (359)
T 1h2b_A          186 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-RL---G-ADHV----VDARRD---PVKQVMELTRG  252 (359)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH-HT---T-CSEE----EETTSC---HHHHHHHHTTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-Hh---C-CCEE----Eeccch---HHHHHHHHhCC
Confidence            4889999999 89999998887788 999999999988766543 22   2 2222    344332   33444444333


Q ss_pred             CCccEEEEecccc
Q 028656          131 LDVGVLINNVGIS  143 (206)
Q Consensus       131 ~~id~lvnnAg~~  143 (206)
                      ..+|++++++|..
T Consensus       253 ~g~Dvvid~~G~~  265 (359)
T 1h2b_A          253 RGVNVAMDFVGSQ  265 (359)
T ss_dssp             CCEEEEEESSCCH
T ss_pred             CCCcEEEECCCCc
Confidence            3578999998753

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.50  E-value=0.00035  Score=57.07  Aligned_cols=75  Identities=15%  Similarity=0.239  Sum_probs=52.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+|+ |++|...++.+...|++|+++++++++.+.+.+++    +...    ..|..+.  +   .+.+..+  
T Consensus       187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~l----Ga~~----v~~~~~~--~---~~~~~~~--  250 (366)
T 1yqd_A          187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNF----GADS----FLVSRDQ--E---QMQAAAG--  250 (366)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTS----CCSE----EEETTCH--H---HHHHTTT--
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----CCce----EEeccCH--H---HHHHhhC--
Confidence            5889999996 99999999998899999999999998876554332    2221    1344432  2   2333233  


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++++++|.
T Consensus       251 ~~D~vid~~g~  261 (366)
T 1yqd_A          251 TLDGIIDTVSA  261 (366)
T ss_dssp             CEEEEEECCSS
T ss_pred             CCCEEEECCCc
Confidence            47799999875

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=97.47  E-value=0.00059  Score=55.82  Aligned_cols=80  Identities=24%  Similarity=0.250  Sum_probs=53.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|+|+ |++|...++.+...|+ +|+.+++++++++.++ ++   + ...+    .|..+..++..+.+.+..++
T Consensus       191 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~l---G-a~~v----i~~~~~~~~~~~~~~~~~~~  260 (374)
T 2jhf_A          191 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK-EV---G-ATEC----VNPQDYKKPIQEVLTEMSNG  260 (374)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT---T-CSEE----ECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hh---C-CceE----ecccccchhHHHHHHHHhCC
Confidence            5889999995 8999999988888999 7999999998876543 22   2 2211    34332111233444444444


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                       .+|++++++|.
T Consensus       261 -g~D~vid~~g~  271 (374)
T 2jhf_A          261 -GVDFSFEVIGR  271 (374)
T ss_dssp             -CBSEEEECSCC
T ss_pred             -CCcEEEECCCC
Confidence             57799999874

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=97.47  E-value=0.0003  Score=56.18  Aligned_cols=37  Identities=24%  Similarity=0.296  Sum_probs=32.2

Q ss_pred             cCCcE-EEEECCCC-----------------h-HHHHHHHHHHHCCCcEEEEEcCh
Q 028656           51 KYGSW-ALVTGPTD-----------------G-IGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        51 ~~~k~-vlItGas~-----------------g-iG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      +.||+ |+||+|+.                 | .|.++|++++++|+.|+++.++.
T Consensus        34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~   89 (313)
T 1p9o_A           34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRAR   89 (313)
T ss_dssp             HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCC
Confidence            45777 99997765                 6 99999999999999999999864

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=97.47  E-value=0.0012  Score=54.04  Aligned_cols=79  Identities=11%  Similarity=0.149  Sum_probs=53.5

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      ..|++|+|.||+|++|...++.....|++|+.+. ++++++. .+++   + ...+    .|..+.  +..+.+.+..++
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~-~~~l---G-a~~v----i~~~~~--~~~~~v~~~t~g  230 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDL-AKSR---G-AEEV----FDYRAP--NLAQTIRTYTKN  230 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHH-HHHT---T-CSEE----EETTST--THHHHHHHHTTT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHH-HHHc---C-CcEE----EECCCc--hHHHHHHHHccC
Confidence            4689999999999999999888888999998886 6666543 2222   2 2211    344443  444556555544


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                       .+|+++.++|.
T Consensus       231 -~~d~v~d~~g~  241 (371)
T 3gqv_A          231 -NLRYALDCITN  241 (371)
T ss_dssp             -CCCEEEESSCS
T ss_pred             -CccEEEECCCc
Confidence             36788888774

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=97.45  E-value=0.00067  Score=55.40  Aligned_cols=80  Identities=21%  Similarity=0.216  Sum_probs=53.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|+|+ |++|...++.+...|+ +|+.+++++++++.+. ++   + ...+    .|..+..++..+.+.+..++
T Consensus       190 ~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~-~l---G-a~~v----i~~~~~~~~~~~~v~~~~~~  259 (373)
T 2fzw_A          190 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EF---G-ATEC----INPQDFSKPIQEVLIEMTDG  259 (373)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HH---T-CSEE----ECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hc---C-CceE----eccccccccHHHHHHHHhCC
Confidence            4889999996 8999999888888899 7999999988876543 33   2 2211    24332111333445444444


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                       .+|++++++|.
T Consensus       260 -g~D~vid~~g~  270 (373)
T 2fzw_A          260 -GVDYSFECIGN  270 (373)
T ss_dssp             -CBSEEEECSCC
T ss_pred             -CCCEEEECCCc
Confidence             57799999874

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.45  E-value=0.00071  Score=54.55  Aligned_cols=76  Identities=16%  Similarity=0.220  Sum_probs=53.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+|+ |++|...++.+...|++|+.+++++++++.+.    +.+ ...+    .|..+.  +..+.+.+..+  
T Consensus       166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~----~lG-a~~~----i~~~~~--~~~~~~~~~~g--  231 (340)
T 3s2e_A          166 PGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLAR----RLG-AEVA----VNARDT--DPAAWLQKEIG--  231 (340)
T ss_dssp             TTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHHHHHHHH----HTT-CSEE----EETTTS--CHHHHHHHHHS--
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH----HcC-CCEE----EeCCCc--CHHHHHHHhCC--
Confidence            5889999997 89999998888889999999999988776432    222 2211    344443  34455555444  


Q ss_pred             CccEEEEecc
Q 028656          132 DVGVLINNVG  141 (206)
Q Consensus       132 ~id~lvnnAg  141 (206)
                      .+|+++.++|
T Consensus       232 ~~d~vid~~g  241 (340)
T 3s2e_A          232 GAHGVLVTAV  241 (340)
T ss_dssp             SEEEEEESSC
T ss_pred             CCCEEEEeCC
Confidence            4668888876

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=97.44  E-value=0.00072  Score=55.31  Aligned_cols=80  Identities=19%  Similarity=0.172  Sum_probs=53.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++|+|+|+ |++|...++.+...|+ +|+.+++++++++.+. ++   + ...+    .|..+..++..+.+.+..++
T Consensus       195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l---G-a~~v----i~~~~~~~~~~~~v~~~~~~  264 (376)
T 1e3i_A          195 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK-AL---G-ATDC----LNPRELDKPVQDVITELTAG  264 (376)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT---T-CSEE----ECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hh---C-CcEE----EccccccchHHHHHHHHhCC
Confidence            4889999996 8999999888888999 7999999998876543 22   2 2211    24332111334445444444


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                       .+|++++++|.
T Consensus       265 -g~Dvvid~~G~  275 (376)
T 1e3i_A          265 -GVDYSLDCAGT  275 (376)
T ss_dssp             -CBSEEEESSCC
T ss_pred             -CccEEEECCCC
Confidence             57799999874

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=97.43  E-value=0.00038  Score=57.03  Aligned_cols=80  Identities=16%  Similarity=0.142  Sum_probs=55.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++|+|+|+ |++|...++.+...|+ +|+.+++++++++.+. +   .+ ...    ..|..+..++..+.+.+..++
T Consensus       193 ~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~-~---lG-a~~----vi~~~~~~~~~~~~i~~~~~g  262 (378)
T 3uko_A          193 PGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK-K---FG-VNE----FVNPKDHDKPIQEVIVDLTDG  262 (378)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH-T---TT-CCE----EECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-H---cC-CcE----EEccccCchhHHHHHHHhcCC
Confidence            5889999998 8999998888888899 8999999998876432 2   22 121    134332122445566665555


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                       .+|+++.++|.
T Consensus       263 -g~D~vid~~g~  273 (378)
T 3uko_A          263 -GVDYSFECIGN  273 (378)
T ss_dssp             -CBSEEEECSCC
T ss_pred             -CCCEEEECCCC
Confidence             67899998874

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.40  E-value=0.00077  Score=54.63  Aligned_cols=79  Identities=20%  Similarity=0.207  Sum_probs=54.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|+|+ |++|...++.....|+ +|+.+++++++++.+. ++   + ...+    .|..+.  +..+.+.+..++
T Consensus       166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~l---G-a~~v----i~~~~~--~~~~~v~~~t~g  233 (352)
T 3fpc_A          166 LGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRKHCCDIAL-EY---G-ATDI----INYKNG--DIVEQILKATDG  233 (352)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHH-HH---T-CCEE----ECGGGS--CHHHHHHHHTTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-Hh---C-CceE----EcCCCc--CHHHHHHHHcCC
Confidence            4888999986 8999998888778899 8999999887765432 23   2 1211    233333  445666666665


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                      ..+|++++++|.
T Consensus       234 ~g~D~v~d~~g~  245 (352)
T 3fpc_A          234 KGVDKVVIAGGD  245 (352)
T ss_dssp             CCEEEEEECSSC
T ss_pred             CCCCEEEECCCC
Confidence            567799988875

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.39  E-value=0.00078  Score=47.21  Aligned_cols=73  Identities=16%  Similarity=0.310  Sum_probs=49.7

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      ++++|.|+ |.+|..+++.|.+.|++|+++++++++.+++.+    .  +  +..+..|.++.  +..++.  ...  +.
T Consensus         8 ~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~--g--~~~i~gd~~~~--~~l~~a--~i~--~a   72 (140)
T 3fwz_A            8 NHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----R--G--VRAVLGNAANE--EIMQLA--HLE--CA   72 (140)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T--T--CEEEESCTTSH--HHHHHT--TGG--GC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c--C--CCEEECCCCCH--HHHHhc--Ccc--cC
Confidence            35778887 789999999999999999999999988765443    1  2  34566777764  322221  122  34


Q ss_pred             cEEEEecc
Q 028656          134 GVLINNVG  141 (206)
Q Consensus       134 d~lvnnAg  141 (206)
                      |.+|.+.+
T Consensus        73 d~vi~~~~   80 (140)
T 3fwz_A           73 KWLILTIP   80 (140)
T ss_dssp             SEEEECCS
T ss_pred             CEEEEECC
Confidence            47776643

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.39  E-value=0.0013  Score=53.66  Aligned_cols=78  Identities=19%  Similarity=0.245  Sum_probs=53.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|+|+ |++|...++.+...|+ +|+.+++++++++.+. ++   + ...+    .|..++  +..+.+.+..++
T Consensus       190 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~-~l---G-a~~v----i~~~~~--~~~~~~~~~~~g  257 (371)
T 1f8f_A          190 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QL---G-ATHV----INSKTQ--DPVAAIKEITDG  257 (371)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HH---T-CSEE----EETTTS--CHHHHHHHHTTS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-Hc---C-CCEE----ecCCcc--CHHHHHHHhcCC
Confidence            4889999995 8999998888778899 6999999988766542 22   2 2211    244333  334555555555


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                       .+|++++++|.
T Consensus       258 -g~D~vid~~g~  268 (371)
T 1f8f_A          258 -GVNFALESTGS  268 (371)
T ss_dssp             -CEEEEEECSCC
T ss_pred             -CCcEEEECCCC
Confidence             67899999874

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=97.38  E-value=0.00059  Score=55.67  Aligned_cols=78  Identities=13%  Similarity=0.130  Sum_probs=51.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHH-CCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAK-TGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|+||+|++|...++.+.. .|++|+.+++++++++.+.    +.+ ...+    .|..+   +..+.+.+. ++
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~----~lG-ad~v----i~~~~---~~~~~v~~~-~~  237 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVK----SLG-AHHV----IDHSK---PLAAEVAAL-GL  237 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH----HTT-CSEE----ECTTS---CHHHHHHTT-CS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH----HcC-CCEE----EeCCC---CHHHHHHHh-cC
Confidence            588999999999999887766655 5889999999988766543    222 2211    23332   233444433 33


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                      ..+|++++++|.
T Consensus       238 ~g~Dvvid~~g~  249 (363)
T 4dvj_A          238 GAPAFVFSTTHT  249 (363)
T ss_dssp             CCEEEEEECSCH
T ss_pred             CCceEEEECCCc
Confidence            357788888764

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.37  E-value=0.00025  Score=56.32  Aligned_cols=42  Identities=21%  Similarity=0.291  Sum_probs=38.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .|++++|+||+|++|...++.+...|++|+.+++++++++.+
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~  166 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP  166 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            488999999999999999999889999999999998876654

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=97.36  E-value=0.001  Score=53.97  Aligned_cols=118  Identities=20%  Similarity=0.202  Sum_probs=70.0

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHHHhc-CCceEEEEEEecCCCchHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQAKY-AKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      +.++++.|+|++|.+|..++..++.+|  .+|++.|++.++++..+.+++... +..++.     .+++       ..+.
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~-----~t~d-------~~~a   73 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLT-----FTSD-------IKEA   73 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCE-----EESC-------HHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceE-----EcCC-------HHHH
Confidence            346789999999999999999999988  489999999988887777776531 111111     1111       1222


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCce-EEEecc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLS-MLNIGK  194 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~-iv~isS  194 (206)
                      +.  +-|++|.+||.... +    ..+.   ...++.|..-...+    .+.+.+...... ++++|.
T Consensus        74 l~--dADvVvitaG~p~k-p----G~~R---~dLl~~N~~I~~~i----~~~i~~~~p~a~~vlvvsN  127 (343)
T 3fi9_A           74 LT--DAKYIVSSGGAPRK-E----GMTR---EDLLKGNAEIAAQL----GKDIKSYCPDCKHVIIIFN  127 (343)
T ss_dssp             HT--TEEEEEECCC------------CH---HHHHHHHHHHHHHH----HHHHHHHCTTCCEEEECSS
T ss_pred             hC--CCCEEEEccCCCCC-C----CCCH---HHHHHHHHHHHHHH----HHHHHHhccCcEEEEEecC
Confidence            34  35599999997432 1    1222   33466676644444    444444443331 455554

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=97.36  E-value=0.0019  Score=52.19  Aligned_cols=63  Identities=14%  Similarity=0.181  Sum_probs=52.2

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh-------------------hhHHHHHHHHHHhcCCceEEEE
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP-------------------DKLKDVSDSIQAKYAKTQIKSV  109 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~  109 (206)
                      ++++++|+|.|+ ||+|.++++.|+..|. ++.++|++.                   .+.+.+++.+++.+|+.++...
T Consensus        31 kL~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~  109 (340)
T 3rui_A           31 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV  109 (340)
T ss_dssp             HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEE
Confidence            478999999998 5999999999999996 788888753                   5677788888888888887777


Q ss_pred             EEec
Q 028656          110 VVDF  113 (206)
Q Consensus       110 ~~d~  113 (206)
                      ..++
T Consensus       110 ~~~i  113 (340)
T 3rui_A          110 KLSI  113 (340)
T ss_dssp             CCCC
T ss_pred             eccc
Confidence            6544

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=97.35  E-value=0.00085  Score=54.84  Aligned_cols=80  Identities=24%  Similarity=0.221  Sum_probs=53.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++|+|+|+ |++|...++.....|+ +|+.+++++++++.++ ++   + ...+    .|..+..++..+.+.+..++
T Consensus       191 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l---G-a~~v----i~~~~~~~~~~~~i~~~t~g  260 (373)
T 1p0f_A          191 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-EL---G-ATEC----LNPKDYDKPIYEVICEKTNG  260 (373)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HT---T-CSEE----ECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-Hc---C-CcEE----EecccccchHHHHHHHHhCC
Confidence            4889999996 8999998887778898 7999999988876543 22   2 2211    23332111334455554444


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                       .+|++++++|.
T Consensus       261 -g~Dvvid~~g~  271 (373)
T 1p0f_A          261 -GVDYAVECAGR  271 (373)
T ss_dssp             -CBSEEEECSCC
T ss_pred             -CCCEEEECCCC
Confidence             57799999874

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.34  E-value=0.00047  Score=50.49  Aligned_cols=43  Identities=14%  Similarity=0.054  Sum_probs=36.6

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHC-CCcEEEEEcChhhHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~~~~~~~   93 (206)
                      +..+++++|.|+ |.+|..+++.|.+. |++|+++++++++.+++
T Consensus        36 ~~~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~   79 (183)
T 3c85_A           36 NPGHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREEAAQQH   79 (183)
T ss_dssp             CCTTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHH
T ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHHHHHHH
Confidence            355777888885 89999999999999 99999999998876654

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=97.30  E-value=0.00068  Score=55.25  Aligned_cols=60  Identities=15%  Similarity=0.395  Sum_probs=48.9

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh-------------------hhHHHHHHHHHHhcCCceEEEE
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP-------------------DKLKDVSDSIQAKYAKTQIKSV  109 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~  109 (206)
                      ++++++|+|.|+ ||+|.++++.|+..|. ++.++|++.                   .+.+.+++.+++.+++.++...
T Consensus       115 ~L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~  193 (353)
T 3h5n_A          115 KLKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEI  193 (353)
T ss_dssp             HHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEe
Confidence            466899999998 7999999999999996 899998763                   4667788888888777776664


Q ss_pred             E
Q 028656          110 V  110 (206)
Q Consensus       110 ~  110 (206)
                      .
T Consensus       194 ~  194 (353)
T 3h5n_A          194 A  194 (353)
T ss_dssp             E
T ss_pred             e
Confidence            4

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.30  E-value=0.0011  Score=54.28  Aligned_cols=78  Identities=27%  Similarity=0.300  Sum_probs=52.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHH---H
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKE---A  127 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~  127 (206)
                      .|++++|+|+ |++|...++.....|+ +|+.+++++++.+.+ +++   + ...    ..|..+.  +..+.+.+   .
T Consensus       182 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l---G-a~~----vi~~~~~--~~~~~i~~~~~~  249 (370)
T 4ej6_A          182 AGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRRLA-EEV---G-ATA----TVDPSAG--DVVEAIAGPVGL  249 (370)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHH---T-CSE----EECTTSS--CHHHHHHSTTSS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHc---C-CCE----EECCCCc--CHHHHHHhhhhc
Confidence            4889999998 8999998888888999 888898988776533 333   2 221    1344433  33444444   3


Q ss_pred             hcCCCccEEEEeccc
Q 028656          128 IEGLDVGVLINNVGI  142 (206)
Q Consensus       128 ~~~~~id~lvnnAg~  142 (206)
                      .++ .+|++++++|.
T Consensus       250 ~~g-g~Dvvid~~G~  263 (370)
T 4ej6_A          250 VPG-GVDVVIECAGV  263 (370)
T ss_dssp             STT-CEEEEEECSCC
T ss_pred             cCC-CCCEEEECCCC
Confidence            333 57799998873

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.29  E-value=0.001  Score=54.85  Aligned_cols=78  Identities=21%  Similarity=0.356  Sum_probs=54.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHH-HHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEG-VERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~  129 (206)
                      .|++++|.|+ |++|...++.....|+ +|+.+++++++++.+.    +.  +..  .  +|..+.  +. .+.+.+..+
T Consensus       185 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~l--Ga~--~--i~~~~~--~~~~~~~~~~~~  251 (398)
T 2dph_A          185 PGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKLLS----DA--GFE--T--IDLRNS--APLRDQIDQILG  251 (398)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH----TT--TCE--E--EETTSS--SCHHHHHHHHHS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----Hc--CCc--E--EcCCCc--chHHHHHHHHhC
Confidence            4889999997 9999998887777899 8999999988765432    22  222  2  354433  22 344555455


Q ss_pred             CCCccEEEEeccc
Q 028656          130 GLDVGVLINNVGI  142 (206)
Q Consensus       130 ~~~id~lvnnAg~  142 (206)
                      +..+|+++.++|.
T Consensus       252 g~g~Dvvid~~g~  264 (398)
T 2dph_A          252 KPEVDCGVDAVGF  264 (398)
T ss_dssp             SSCEEEEEECSCT
T ss_pred             CCCCCEEEECCCC
Confidence            4357899999885

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.27  E-value=0.0016  Score=52.81  Aligned_cols=80  Identities=18%  Similarity=0.201  Sum_probs=53.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC-CchHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG-DLDEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~  129 (206)
                      .|++++|+|+ |++|...++.....|+ +|+.+++++++++.+. +   .+ ...  .  .|..+ +.++..+.+.+..+
T Consensus       171 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~---lG-a~~--v--i~~~~~~~~~~~~~i~~~~~  240 (356)
T 1pl8_A          171 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-E---IG-ADL--V--LQISKESPQEIARKVEGQLG  240 (356)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-H---TT-CSE--E--EECSSCCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-H---hC-CCE--E--EcCcccccchHHHHHHHHhC
Confidence            4789999996 8999998888778999 8999999987765433 2   22 221  1  23331 11344556655554


Q ss_pred             CCCccEEEEeccc
Q 028656          130 GLDVGVLINNVGI  142 (206)
Q Consensus       130 ~~~id~lvnnAg~  142 (206)
                       ..+|++++++|.
T Consensus       241 -~g~D~vid~~g~  252 (356)
T 1pl8_A          241 -CKPEVTIECTGA  252 (356)
T ss_dssp             -SCCSEEEECSCC
T ss_pred             -CCCCEEEECCCC
Confidence             246799999873

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=97.26  E-value=0.0081  Score=48.30  Aligned_cols=115  Identities=17%  Similarity=0.178  Sum_probs=70.1

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcCC--ceEEEEEEecCCCchHHHHHHHHHh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYAK--TQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      .+++.|+|+ |.+|.+++..++..|.  +|++.|+++++++..+.+++...+-  ..+.....|            .+.+
T Consensus         5 ~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~------------~~a~   71 (326)
T 3pqe_A            5 VNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT------------YEDC   71 (326)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC------------GGGG
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc------------HHHh
Confidence            567999996 9999999999999886  8999999999888877777653211  122222111            1123


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      .  +-|++|.+||.....     ..+..   ..++.|.--.-.+.+.    +.+......++++|.
T Consensus        72 ~--~aDvVvi~ag~p~kp-----G~~R~---dL~~~N~~Iv~~i~~~----I~~~~p~a~vlvvtN  123 (326)
T 3pqe_A           72 K--DADIVCICAGANQKP-----GETRL---ELVEKNLKIFKGIVSE----VMASGFDGIFLVATN  123 (326)
T ss_dssp             T--TCSEEEECCSCCCCT-----TCCHH---HHHHHHHHHHHHHHHH----HHHTTCCSEEEECSS
T ss_pred             C--CCCEEEEecccCCCC-----CccHH---HHHHHHHHHHHHHHHH----HHHhcCCeEEEEcCC
Confidence            3  345999999974321     22322   3466666544444444    443333332555554

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.24  E-value=0.0052  Score=49.16  Aligned_cols=117  Identities=15%  Similarity=0.233  Sum_probs=67.8

Q ss_pred             EEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      ++.|+||+|.+|..++..|+..|  .+|++.|+++  .+....++.......++....  -++       ...+.+.+  
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~--~t~-------d~~~a~~~--   68 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYL--GPE-------QLPDCLKG--   68 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEE--SGG-------GHHHHHTT--
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEec--CCC-------CHHHHhCC--
Confidence            58999999999999999999888  6899999987  333444443321111121110  011       12223444  


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE  196 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~  196 (206)
                      -|++|+.||.....     ..+..   ..+..|.-....+.+.+.+.   ...+. ++++|-..
T Consensus        69 aDvVvi~ag~~~~~-----g~~r~---dl~~~n~~i~~~i~~~i~~~---~p~a~-viv~sNPv  120 (314)
T 1mld_A           69 CDVVVIPAGVPRKP-----GMTRD---DLFNTNATIVATLTAACAQH---CPDAM-ICIISNPV  120 (314)
T ss_dssp             CSEEEECCSCCCCT-----TCCGG---GGHHHHHHHHHHHHHHHHHH---CTTSE-EEECSSCH
T ss_pred             CCEEEECCCcCCCC-----CCcHH---HHHHHHHHHHHHHHHHHHhh---CCCeE-EEEECCCc
Confidence            44999999975432     11222   23566776665555555432   23344 77766543

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.24  E-value=0.00027  Score=55.83  Aligned_cols=46  Identities=20%  Similarity=0.325  Sum_probs=40.2

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~   95 (206)
                      +++++|+++|.|+ ||.|++++..|++.|+ +|.+++|+.++.+++++
T Consensus       118 ~~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~  164 (282)
T 3fbt_A          118 VEIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYG  164 (282)
T ss_dssp             CCCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCT
T ss_pred             CCccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            4567999999998 5999999999999998 89999999988766554

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=97.23  E-value=0.0025  Score=52.46  Aligned_cols=80  Identities=24%  Similarity=0.277  Sum_probs=55.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++|+|.|+ |++|...++.....|+ +|+.+++++++++.++    +.  +..  .  +|..+. +...+.+.+..++
T Consensus       185 ~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~----~l--Ga~--~--i~~~~~-~~~~~~v~~~t~g  252 (398)
T 1kol_A          185 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAK----AQ--GFE--I--ADLSLD-TPLHEQIAALLGE  252 (398)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HT--TCE--E--EETTSS-SCHHHHHHHHHSS
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH----Hc--CCc--E--EccCCc-chHHHHHHHHhCC
Confidence            4889999995 9999998887778899 6889999988766543    22  222  2  344432 1234555555554


Q ss_pred             CCccEEEEecccc
Q 028656          131 LDVGVLINNVGIS  143 (206)
Q Consensus       131 ~~id~lvnnAg~~  143 (206)
                      ..+|+++.++|..
T Consensus       253 ~g~Dvvid~~G~~  265 (398)
T 1kol_A          253 PEVDCAVDAVGFE  265 (398)
T ss_dssp             SCEEEEEECCCTT
T ss_pred             CCCCEEEECCCCc
Confidence            4578999999853

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=97.21  E-value=0.0024  Score=51.35  Aligned_cols=118  Identities=14%  Similarity=0.211  Sum_probs=64.6

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcCC-ceEEEEEEecCCCchHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYAK-TQIKSVVVDFSGDLDEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~  126 (206)
                      +.+++++.|+|+ |++|.+++..++..|.  ++++.|+++++++....++....+- ..+.... +   .        .+
T Consensus         6 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~-~---~--------~~   72 (326)
T 3vku_A            6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYS-A---E--------YS   72 (326)
T ss_dssp             -CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C---C--------GG
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEE-C---c--------HH
Confidence            345678999997 8999999999999886  8999999998888777777653210 1111111 1   1        11


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      .+.  +-|++|..||.....     ..+.   ...++.|.-    +.+...+.+.+......++++|.
T Consensus        73 a~~--~aDiVvi~ag~~~kp-----G~tR---~dL~~~N~~----I~~~i~~~i~~~~p~a~ilvvtN  126 (326)
T 3vku_A           73 DAK--DADLVVITAGAPQKP-----GETR---LDLVNKNLK----ILKSIVDPIVDSGFNGIFLVAAN  126 (326)
T ss_dssp             GGT--TCSEEEECCCCC----------------------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred             Hhc--CCCEEEECCCCCCCC-----CchH---HHHHHHHHH----HHHHHHHHHHhcCCceEEEEccC
Confidence            233  345999999975321     1121   234555654    34444444444433332555553

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.20  E-value=0.0077  Score=48.54  Aligned_cols=118  Identities=24%  Similarity=0.248  Sum_probs=71.6

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhc--CCceEEEEEEecCCCchHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKY--AKTQIKSVVVDFSGDLDEGVERIK  125 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~  125 (206)
                      +...+.+.|+|+ |++|.+++..++.+|.  +|++.|++.++++....+++...  +... ....   +++.        
T Consensus        16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~-~i~~---~~d~--------   82 (331)
T 4aj2_A           16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTP-KIVS---SKDY--------   82 (331)
T ss_dssp             -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCC-EEEE---CSSG--------
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCC-eEEE---cCCH--------
Confidence            345778999998 8999999999999986  89999999988888888887531  1111 1111   1110        


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      +.+.  +-|++|.+||.....     .++.   ...++.|.-=    .+...+.+.+......++++|.
T Consensus        83 ~~~~--~aDiVvi~aG~~~kp-----G~tR---~dL~~~N~~I----~~~i~~~i~~~~p~a~vlvvtN  137 (331)
T 4aj2_A           83 SVTA--NSKLVIITAGARQQE-----GESR---LNLVQRNVNI----FKFIIPNVVKYSPQCKLLIVSN  137 (331)
T ss_dssp             GGGT--TEEEEEECCSCCCCT-----TCCG---GGGHHHHHHH----HHHHHHHHHHHCTTCEEEECSS
T ss_pred             HHhC--CCCEEEEccCCCCCC-----CccH---HHHHHHHHHH----HHHHHHHHHHHCCCeEEEEecC
Confidence            1223  466999999975431     1222   2345666653    3444444443333332666554

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=97.19  E-value=0.0012  Score=53.62  Aligned_cols=76  Identities=17%  Similarity=0.220  Sum_probs=50.0

Q ss_pred             cCCcEEEEECCCChHHHHH-HHHH-HHCCCc-EEEEEcChh---hHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSF-AFQL-AKTGLN-LVLVGRNPD---KLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERI  124 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~-a~~l-~~~g~~-V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  124 (206)
                      ..+++++|+|+ |++|... ++.+ ...|++ |+.++++++   +++.+. ++     +.  ..+  |..++  +..+ +
T Consensus       171 ~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~-~l-----Ga--~~v--~~~~~--~~~~-i  236 (357)
T 2b5w_A          171 WDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE-EL-----DA--TYV--DSRQT--PVED-V  236 (357)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHH-HT-----TC--EEE--ETTTS--CGGG-H
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHH-Hc-----CC--ccc--CCCcc--CHHH-H
Confidence            33589999999 9999998 7666 567997 999999887   665432 22     22  112  44432  1222 3


Q ss_pred             HHHhcCCCccEEEEeccc
Q 028656          125 KEAIEGLDVGVLINNVGI  142 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~  142 (206)
                      .+. ++ .+|++++++|.
T Consensus       237 ~~~-~g-g~Dvvid~~g~  252 (357)
T 2b5w_A          237 PDV-YE-QMDFIYEATGF  252 (357)
T ss_dssp             HHH-SC-CEEEEEECSCC
T ss_pred             HHh-CC-CCCEEEECCCC
Confidence            333 44 67799998874

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.15  E-value=0.016  Score=45.91  Aligned_cols=112  Identities=13%  Similarity=0.169  Sum_probs=67.1

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhc---C-CceEEEEEEecCCCchHHHHHHHHHh
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKY---A-KTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~---~-~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      ++.|+|+ |.+|.+++..++..|.  +|++.++++++++....+++...   + ..++..     +++        .+.+
T Consensus         2 kI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~-----t~d--------~~a~   67 (294)
T 1oju_A            2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG-----GAD--------YSLL   67 (294)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE-----ESC--------GGGG
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEE-----eCC--------HHHh
Confidence            4789999 9999999999999887  89999999988765444444322   1 122211     111        1123


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      .+  -|++|..||.....     ..+..   ..++.|.-    +.+...+.+.+......++++|.
T Consensus        68 ~~--aDiVViaag~~~kp-----G~~R~---dl~~~N~~----i~~~i~~~i~~~~p~a~iivvsN  119 (294)
T 1oju_A           68 KG--SEIIVVTAGLARKP-----GMTRL---DLAHKNAG----IIKDIAKKIVENAPESKILVVTN  119 (294)
T ss_dssp             TT--CSEEEECCCCCCCS-----SCCHH---HHHHHHHH----HHHHHHHHHHTTSTTCEEEECSS
T ss_pred             CC--CCEEEECCCCCCCC-----CCcHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEeCC
Confidence            33  44999999975432     22333   23555644    45555555555543342555554

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.14  E-value=0.00094  Score=49.97  Aligned_cols=43  Identities=26%  Similarity=0.399  Sum_probs=37.4

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~   97 (206)
                      ++.|+||+|.+|.++++.|++.|++|.+.+|++++.++..++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~   44 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEY   44 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence            5789999999999999999999999999999988777665543

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.14  E-value=0.00077  Score=52.80  Aligned_cols=43  Identities=28%  Similarity=0.413  Sum_probs=39.4

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~   97 (206)
                      +|+++|.|+ ||.|++++..|++.|.+|.+.+|+.++.+++. ++
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~  160 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL  160 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC
Confidence            899999997 89999999999999999999999999988877 44

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=97.11  E-value=0.0074  Score=48.69  Aligned_cols=117  Identities=23%  Similarity=0.234  Sum_probs=70.7

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCC--c-----EEEEEcCh--hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGL--N-----LVLVGRNP--DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERI  124 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~--~-----V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  124 (206)
                      .++.||||+|.+|.+++..++..|.  +     ++++|+++  ++++....+++.... ....  .....+.       .
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~-~~~~--~~~~~~~-------~   73 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL-PLLK--DVIATDK-------E   73 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCC-TTEE--EEEEESC-------H
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhh-cccC--CEEEcCC-------c
Confidence            4699999999999999999998875  5     99999975  466666677765311 1121  2222222       1


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCc-eEEEecc
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGL-SMLNIGK  194 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~-~iv~isS  194 (206)
                      .+.+.+  -|++|+.||.... +    ..+.   ...++.|......+.+.+    .+..... .++++|.
T Consensus        74 ~~~~~d--aDvVvitAg~prk-p----G~tR---~dll~~N~~i~~~i~~~i----~~~~~~~~~vivvsN  130 (333)
T 5mdh_A           74 EIAFKD--LDVAILVGSMPRR-D----GMER---KDLLKANVKIFKCQGAAL----DKYAKKSVKVIVVGN  130 (333)
T ss_dssp             HHHTTT--CSEEEECCSCCCC-T----TCCT---TTTHHHHHHHHHHHHHHH----HHHSCTTCEEEECSS
T ss_pred             HHHhCC--CCEEEEeCCCCCC-C----CCCH---HHHHHHHHHHHHHHHHHH----HHhCCCCeEEEEcCC
Confidence            223343  4599999986542 1    1121   345677777655555554    4444332 2666654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.10  E-value=0.0022  Score=48.33  Aligned_cols=40  Identities=8%  Similarity=0.225  Sum_probs=35.1

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~   95 (206)
                      +++|.|+ |.+|..+++.|.++|++|+++++++++.+++.+
T Consensus         2 ~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~   41 (218)
T 3l4b_C            2 KVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAK   41 (218)
T ss_dssp             CEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence            4789996 899999999999999999999999988776543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=97.09  E-value=0.0026  Score=51.35  Aligned_cols=78  Identities=22%  Similarity=0.237  Sum_probs=53.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHC-CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|.|+ |++|...++..... |++|+.+++++++++.++    +.+ ...+    .|..+   +..+.+.+..++
T Consensus       171 ~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~----~lG-a~~~----i~~~~---~~~~~v~~~t~g  237 (345)
T 3jv7_A          171 PGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALAR----EVG-ADAA----VKSGA---GAADAIRELTGG  237 (345)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH----HTT-CSEE----EECST---THHHHHHHHHGG
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcC-CCEE----EcCCC---cHHHHHHHHhCC
Confidence            4889999998 89999887776666 789999999998776443    222 2221    22222   344566666555


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                      ..+|+++.++|.
T Consensus       238 ~g~d~v~d~~G~  249 (345)
T 3jv7_A          238 QGATAVFDFVGA  249 (345)
T ss_dssp             GCEEEEEESSCC
T ss_pred             CCCeEEEECCCC
Confidence            457799998874

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=97.08  E-value=0.0048  Score=53.50  Aligned_cols=63  Identities=14%  Similarity=0.181  Sum_probs=53.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh-------------------hhHHHHHHHHHHhcCCceEEEE
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP-------------------DKLKDVSDSIQAKYAKTQIKSV  109 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~  109 (206)
                      ++++.+|+|.|+ ||+|.++++.|++.|. ++.++|.+.                   .+.+.+++.+++.+++.++...
T Consensus       323 kL~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~  401 (615)
T 4gsl_A          323 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV  401 (615)
T ss_dssp             HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEe
Confidence            478999999999 5999999999999996 899998863                   5678888889988888888777


Q ss_pred             EEec
Q 028656          110 VVDF  113 (206)
Q Consensus       110 ~~d~  113 (206)
                      ..++
T Consensus       402 ~~~I  405 (615)
T 4gsl_A          402 KLSI  405 (615)
T ss_dssp             CCCC
T ss_pred             eccc
Confidence            6554

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=97.07  E-value=0.0026  Score=51.25  Aligned_cols=78  Identities=23%  Similarity=0.314  Sum_probs=50.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHC-CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|.|+ +++|...+.+++.. |++|+.+++++++++...    +. +...+    .|-.+.  +..+++.+..++
T Consensus       163 ~g~~VlV~Ga-G~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~----~~-Ga~~~----i~~~~~--~~~~~v~~~t~g  230 (348)
T 4eez_A          163 PGDWQVIFGA-GGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK----KI-GADVT----INSGDV--NPVDEIKKITGG  230 (348)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH----HT-TCSEE----EEC-CC--CHHHHHHHHTTS
T ss_pred             CCCEEEEEcC-CCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh----hc-CCeEE----EeCCCC--CHHHHhhhhcCC
Confidence            4889999987 67888777777765 789999999988765332    22 12211    243433  445666666666


Q ss_pred             CCccEEEEecc
Q 028656          131 LDVGVLINNVG  141 (206)
Q Consensus       131 ~~id~lvnnAg  141 (206)
                      .++|.++.++|
T Consensus       231 ~g~d~~~~~~~  241 (348)
T 4eez_A          231 LGVQSAIVCAV  241 (348)
T ss_dssp             SCEEEEEECCS
T ss_pred             CCceEEEEecc
Confidence            56667777654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.05  E-value=0.00087  Score=47.74  Aligned_cols=42  Identities=17%  Similarity=0.319  Sum_probs=36.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKD   92 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~   92 (206)
                      +..+++++|.|+ |.+|..+++.|.+.|++|++++|++++.+.
T Consensus        16 ~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~   57 (155)
T 2g1u_A           16 KQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHR   57 (155)
T ss_dssp             -CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGG
T ss_pred             ccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence            355788999996 899999999999999999999999877553

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=97.04  E-value=0.0018  Score=52.28  Aligned_cols=41  Identities=15%  Similarity=0.127  Sum_probs=36.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHC--CCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKT--GLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~--g~~V~~~~r~~~~~~~~   93 (206)
                      .|++++|+|+ |++|...++.+...  |++|+.+++++++.+.+
T Consensus       170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~  212 (344)
T 2h6e_A          170 AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKKHRDFA  212 (344)
T ss_dssp             SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHH
Confidence            5899999999 89999998888888  99999999998876654

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=97.03  E-value=0.00087  Score=54.46  Aligned_cols=38  Identities=21%  Similarity=0.294  Sum_probs=32.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK   89 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~   89 (206)
                      .|++|+|+||+|++|...++.....|++++.+.++.++
T Consensus       167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~  204 (357)
T 1zsy_A          167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPD  204 (357)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSC
T ss_pred             CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccc
Confidence            58899999999999999888777789998888766543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.00  E-value=0.0034  Score=51.25  Aligned_cols=74  Identities=15%  Similarity=0.182  Sum_probs=50.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+|+ |++|...++.+...|++|+.+++++++++.+.+ +    +...+    .|..+.  +..+++.   +  
T Consensus       194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~-l----Ga~~v----i~~~~~--~~~~~~~---~--  256 (369)
T 1uuf_A          194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA-L----GADEV----VNSRNA--DEMAAHL---K--  256 (369)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-H----TCSEE----EETTCH--HHHHTTT---T--
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c----CCcEE----eccccH--HHHHHhh---c--
Confidence            4889999998 799999998888899999999999988775442 3    22221    243332  2222221   2  


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++++++|.
T Consensus       257 g~Dvvid~~g~  267 (369)
T 1uuf_A          257 SFDFILNTVAA  267 (369)
T ss_dssp             CEEEEEECCSS
T ss_pred             CCCEEEECCCC
Confidence            46789988875

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=96.99  E-value=0.0059  Score=52.81  Aligned_cols=64  Identities=14%  Similarity=0.154  Sum_probs=52.4

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEEE
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIKS  108 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~  108 (206)
                      -++++++|+|.|+ ||+|.++++.|++.|. ++.++|.+                   ..+.+.+++.+++.+++.++..
T Consensus       323 ~kL~~~kVLIVGa-GGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~  401 (598)
T 3vh1_A          323 DIIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATG  401 (598)
T ss_dssp             HHHHTCEEEEECC-SHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEE
T ss_pred             HHHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEE
Confidence            4577999999998 5999999999999997 78898765                   2578888889988888888777


Q ss_pred             EEEec
Q 028656          109 VVVDF  113 (206)
Q Consensus       109 ~~~d~  113 (206)
                      ...++
T Consensus       402 ~~~~I  406 (598)
T 3vh1_A          402 VKLSI  406 (598)
T ss_dssp             ECCCC
T ss_pred             Eeccc
Confidence            66543

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.99  E-value=0.00043  Score=54.53  Aligned_cols=44  Identities=20%  Similarity=0.264  Sum_probs=38.4

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDV   93 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~   93 (206)
                      .++++|+++|+|+ ||+|+++++.|++.|+ +|.+.+|+.++.+++
T Consensus       113 ~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~l  157 (277)
T 3don_A          113 EGIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNW  157 (277)
T ss_dssp             TTGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTC
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            3467999999998 6999999999999998 899999998876543

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=96.97  E-value=0.012  Score=47.59  Aligned_cols=120  Identities=18%  Similarity=0.211  Sum_probs=70.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-------cEEEEEcCh--hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-------NLVLVGRNP--DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGV  121 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  121 (206)
                      .+.-+|.|+||+|+||..++..+++...       .+.+.|.++  +.++-...+++...........   ..++.    
T Consensus        22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~---~~~~~----   94 (345)
T 4h7p_A           22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVV---VTADP----   94 (345)
T ss_dssp             CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEE---EESCH----
T ss_pred             CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEE---EcCCh----
Confidence            3456899999999999999999987542       688889875  3455556666653222222222   12221    


Q ss_pred             HHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC-CCCceEEEecc
Q 028656          122 ERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR-KKGLSMLNIGK  194 (206)
Q Consensus       122 ~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~~iv~isS  194 (206)
                         .+.+.+  -|++|-.||.....     .++.++   .++.|..    +.+...+.+.+. ..+..|+.+|.
T Consensus        95 ---~~a~~~--advVvi~aG~prkp-----GmtR~D---Ll~~Na~----I~~~~~~~i~~~a~~~~~vlvvsN  151 (345)
T 4h7p_A           95 ---RVAFDG--VAIAIMCGAFPRKA-----GMERKD---LLEMNAR----IFKEQGEAIAAVAASDCRVVVVGN  151 (345)
T ss_dssp             ---HHHTTT--CSEEEECCCCCCCT-----TCCHHH---HHHHHHH----HHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             ---HHHhCC--CCEEEECCCCCCCC-----CCCHHH---HHHHhHH----HHHHHHHHHHhhccCceEEEEeCC
Confidence               223444  44999999986532     234443   4666765    555555555543 23441444443

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.95  E-value=0.0016  Score=52.96  Aligned_cols=75  Identities=15%  Similarity=0.212  Sum_probs=50.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+|+ |++|...++.+...|++|+.+++++++.+.+.+++    +...+    .|..+.  +   .+.+..+  
T Consensus       180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~l----Ga~~v----i~~~~~--~---~~~~~~~--  243 (357)
T 2cf5_A          180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDL----GADDY----VIGSDQ--A---KMSELAD--  243 (357)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTS----CCSCE----EETTCH--H---HHHHSTT--
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHc----CCcee----eccccH--H---HHHHhcC--
Confidence            5889999995 89999999888888999999999988766544232    22222    233321  2   2222223  


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|++++++|.
T Consensus       244 g~D~vid~~g~  254 (357)
T 2cf5_A          244 SLDYVIDTVPV  254 (357)
T ss_dssp             TEEEEEECCCS
T ss_pred             CCCEEEECCCC
Confidence            46799999875

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.88  E-value=0.0017  Score=53.79  Aligned_cols=46  Identities=20%  Similarity=0.370  Sum_probs=40.4

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~   97 (206)
                      +.|++++|.|+ |++|+.+++.+...|+ +|++++|+.++.+++.+++
T Consensus       165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~  211 (404)
T 1gpj_A          165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL  211 (404)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH
T ss_pred             ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc
Confidence            57999999998 8999999999999998 8999999998876665554

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.87  E-value=0.0022  Score=52.38  Aligned_cols=47  Identities=19%  Similarity=0.203  Sum_probs=41.6

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~   97 (206)
                      +++||+++|.|+ |.+|..+|+.+.+.|++|++.+++.+++++..+++
T Consensus       170 ~L~GktV~V~G~-G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~  216 (364)
T 1leh_A          170 SLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEE  216 (364)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred             CCCcCEEEEECc-hHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc
Confidence            467999999997 78999999999999999999999998887776654

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=96.86  E-value=0.0012  Score=52.90  Aligned_cols=40  Identities=30%  Similarity=0.365  Sum_probs=35.4

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS   94 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~   94 (206)
                      +++|+||+|++|...++.+...|++|+.+++++++++.+.
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~  192 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLK  192 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHH
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            7999999999999999988889999999999988766543

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.86  E-value=0.026  Score=45.11  Aligned_cols=116  Identities=19%  Similarity=0.208  Sum_probs=68.5

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC--hhhHHHHHHHHHHhc----CCceEEEEEEecCCCchHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN--PDKLKDVSDSIQAKY----AKTQIKSVVVDFSGDLDEGVER  123 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~--~~~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~  123 (206)
                      .+.+++.|.|+ |.+|.+++..++..|. +|++.+++  +++.+....++....    ...++...     ++       
T Consensus         6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t-----~d-------   72 (315)
T 3tl2_A            6 IKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT-----SD-------   72 (315)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE-----SC-------
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc-----CC-------
Confidence            34678999997 8999999999999998 99999999  555555555554321    12222211     11       


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                       .+.+.  +-|++|.++|.....     ..+.   ...++.|..-.-.+.+.    +.+......++++|.
T Consensus        73 -~~a~~--~aDvVIiaag~p~kp-----g~~R---~dl~~~N~~i~~~i~~~----i~~~~p~a~vlvvsN  128 (315)
T 3tl2_A           73 -YADTA--DSDVVVITAGIARKP-----GMSR---DDLVATNSKIMKSITRD----IAKHSPNAIIVVLTN  128 (315)
T ss_dssp             -GGGGT--TCSEEEECCSCCCCT-----TCCH---HHHHHHHHHHHHHHHHH----HHHHCTTCEEEECCS
T ss_pred             -HHHhC--CCCEEEEeCCCCCCC-----CCCH---HHHHHHHHHHHHHHHHH----HHHhCCCeEEEECCC
Confidence             12334  345999999975431     2233   33456666544444444    433333332666654

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.84  E-value=0.002  Score=51.46  Aligned_cols=35  Identities=14%  Similarity=0.262  Sum_probs=31.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN   86 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~   86 (206)
                      .|++++|+||+|++|...++.+...|++|+.++++
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~  186 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASK  186 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEecc
Confidence            58899999999999999999888999999988753

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.84  E-value=0.0015  Score=52.38  Aligned_cols=40  Identities=18%  Similarity=0.125  Sum_probs=35.5

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD   88 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~   88 (206)
                      ..+++|+++.|.|. |.||+++|+.+...|++|+..+|+..
T Consensus       134 ~~~l~g~tvGIiG~-G~IG~~vA~~l~~~G~~V~~~dr~~~  173 (315)
T 3pp8_A          134 EYTREEFSVGIMGA-GVLGAKVAESLQAWGFPLRCWSRSRK  173 (315)
T ss_dssp             CCCSTTCCEEEECC-SHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred             CCCcCCCEEEEEee-CHHHHHHHHHHHHCCCEEEEEcCCch
Confidence            34578999999998 69999999999999999999998764

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=96.80  E-value=0.0023  Score=51.13  Aligned_cols=41  Identities=24%  Similarity=0.386  Sum_probs=36.3

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS   94 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~   94 (206)
                      |+ ++|+||+|++|...++.+...|++|+.+++++++.+.++
T Consensus       148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~  188 (324)
T 3nx4_A          148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLK  188 (324)
T ss_dssp             CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH
T ss_pred             Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            56 999999999999998888889999999999998876554

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.79  E-value=0.018  Score=46.26  Aligned_cols=47  Identities=17%  Similarity=0.131  Sum_probs=39.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQA   99 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~   99 (206)
                      +.+.+.|.|+ |.+|.+++..++..|. +|++.|+++++++....++..
T Consensus         6 ~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~   53 (324)
T 3gvi_A            6 ARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAE   53 (324)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHH
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhc
Confidence            3567999998 8999999999999988 999999999887766656654

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=96.78  E-value=0.023  Score=44.98  Aligned_cols=113  Identities=12%  Similarity=0.070  Sum_probs=69.5

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcC--CceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYA--KTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .+.|.|+ |++|.++|..++.++.  ++++.|.++++.+..+.++....+  +........+  |.         +.+. 
T Consensus         2 KV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~--d~---------~~~~-   68 (294)
T 2x0j_A            2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA--DY---------SLLK-   68 (294)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEES--CG---------GGGT-
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCC--CH---------HHhC-
Confidence            4778895 9999999999998774  799999999887777777765321  1111222111  11         1223 


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                       +-|++|-.||.....     .++.++   .++.|..    +.+...+.+.+..... ++.+-|
T Consensus        69 -~aDvVvitAG~prkp-----GmtR~d---Ll~~Na~----I~~~i~~~i~~~~p~a-ivlvvs  118 (294)
T 2x0j_A           69 -GSEIIVVTAGLARKP-----GMTRLD---LAHKNAG----IIKDIAKKIVENAPES-KILVVT  118 (294)
T ss_dssp             -TCSEEEECCCCCCCS-----SSCHHH---HHHHHHH----HHHHHHHHHHTTSTTC-EEEECS
T ss_pred             -CCCEEEEecCCCCCC-----CCchHH---HHHHHHH----HHHHHHHHHHhcCCce-EEEEec
Confidence             344999999976532     234443   4666765    5666666666555444 444443

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.74  E-value=0.046  Score=43.93  Aligned_cols=47  Identities=26%  Similarity=0.229  Sum_probs=40.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQA   99 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~   99 (206)
                      ..+++.|+|+ |.+|..++..++..|.  +|++.|+++++++....+++.
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~   68 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEH   68 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhh
Confidence            4678999999 9999999999999986  899999999888877777765

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.67  E-value=0.051  Score=43.67  Aligned_cols=46  Identities=15%  Similarity=0.132  Sum_probs=38.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQ   98 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~   98 (206)
                      +..++.|.|| |.+|.+++..++..|. +|++.++++++++.....+.
T Consensus         8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~   54 (331)
T 1pzg_A            8 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLS   54 (331)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHH
Confidence            3457999998 8999999999999997 99999999988777554443

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.65  E-value=0.012  Score=48.27  Aligned_cols=44  Identities=18%  Similarity=0.089  Sum_probs=39.0

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~   95 (206)
                      ..+++++|.|+ |.+|...++.+...|++|++.+|+.++++.+.+
T Consensus       182 v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~  225 (381)
T 3p2y_A          182 VKPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS  225 (381)
T ss_dssp             ECCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH
T ss_pred             cCCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            46899999999 699999999999999999999999988776543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.65  E-value=0.0059  Score=61.25  Aligned_cols=83  Identities=12%  Similarity=0.157  Sum_probs=56.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++|+|.||+||+|.+.++.....|++|+.++++.++.+.+++..... +...+    .|..+.  +..+.+.+..++.
T Consensus      1667 ~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~l-ga~~v----~~~~~~--~~~~~i~~~t~g~ 1739 (2512)
T 2vz8_A         1667 PGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQL-DETCF----ANSRDT--SFEQHVLRHTAGK 1739 (2512)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTC-CSTTE----EESSSS--HHHHHHHHTTTSC
T ss_pred             CCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCC-CceEE----ecCCCH--HHHHHHHHhcCCC
Confidence            5889999999999999998877789999999999887766554432111 11211    233333  5556666655544


Q ss_pred             CccEEEEecc
Q 028656          132 DVGVLINNVG  141 (206)
Q Consensus       132 ~id~lvnnAg  141 (206)
                      .+|+++++.|
T Consensus      1740 GvDvVld~~g 1749 (2512)
T 2vz8_A         1740 GVDLVLNSLA 1749 (2512)
T ss_dssp             CEEEEEECCC
T ss_pred             CceEEEECCC
Confidence            5778988765

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.64  E-value=0.0025  Score=50.14  Aligned_cols=46  Identities=17%  Similarity=0.265  Sum_probs=40.0

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      ..+++||+++|.|+|+-+|+.+++.|.++|++|.++.+....+++.
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~  200 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLY  200 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHH
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHH
Confidence            4567899999999999999999999999999999998876665543

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.61  E-value=0.012  Score=47.33  Aligned_cols=41  Identities=20%  Similarity=0.155  Sum_probs=36.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK   91 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~   91 (206)
                      +++|+++.|.|. |.||+++|+.+...|++|++.+|+.++.+
T Consensus       152 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~  192 (330)
T 2gcg_A          152 GLTQSTVGIIGL-GRIGQAIARRLKPFGVQRFLYTGRQPRPE  192 (330)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTCCEEEEESSSCCHH
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCcchh
Confidence            478999999987 89999999999999999999998875443

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=96.56  E-value=0.0034  Score=56.52  Aligned_cols=79  Identities=16%  Similarity=0.194  Sum_probs=53.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      ..|++|+|.||+||+|...++-....|++|+.++++. +.+.+.     . +...+    .|..+.  +..+.+.+..++
T Consensus       344 ~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~-k~~~l~-----l-ga~~v----~~~~~~--~~~~~i~~~t~g  410 (795)
T 3slk_A          344 RPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASED-KWQAVE-----L-SREHL----ASSRTC--DFEQQFLGATGG  410 (795)
T ss_dssp             CTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGG-GGGGSC-----S-CGGGE----ECSSSS--THHHHHHHHSCS
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChH-Hhhhhh-----c-Chhhe----eecCCh--hHHHHHHHHcCC
Confidence            3589999999999999998888778999999988665 322111     1 12222    233333  455666666665


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                      ..+|+++++.|.
T Consensus       411 ~GvDvVld~~gg  422 (795)
T 3slk_A          411 RGVDVVLNSLAG  422 (795)
T ss_dssp             SCCSEEEECCCT
T ss_pred             CCeEEEEECCCc
Confidence            567799998764

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.54  E-value=0.0038  Score=50.73  Aligned_cols=42  Identities=21%  Similarity=0.253  Sum_probs=36.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS   94 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~   94 (206)
                      .|++++|+|+ |++|...++.+...|++|+.+++++++++.+.
T Consensus       179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~  220 (360)
T 1piw_A          179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAM  220 (360)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            4889999999 99999999888889999999999988876543

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.54  E-value=0.036  Score=44.40  Aligned_cols=46  Identities=15%  Similarity=0.132  Sum_probs=38.6

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQA   99 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~   99 (206)
                      .+++.|+|+ |.+|.+++..++..|. +|++.|+++++.+....+++.
T Consensus         5 ~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~   51 (321)
T 3p7m_A            5 RKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQ   51 (321)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHh
Confidence            457888895 8999999999999887 999999999887766666654

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.52  E-value=0.0021  Score=50.39  Aligned_cols=45  Identities=22%  Similarity=0.355  Sum_probs=38.6

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~   95 (206)
                      ++++++++|.|+ |++|+++++.|.+.|++|.+.+|+.++.+++.+
T Consensus       126 ~~~~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~  170 (275)
T 2hk9_A          126 EVKEKSILVLGA-GGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQ  170 (275)
T ss_dssp             TGGGSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTT
T ss_pred             CcCCCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            456899999997 699999999999999999999999877665543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.50  E-value=0.006  Score=48.36  Aligned_cols=43  Identities=26%  Similarity=0.257  Sum_probs=38.0

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKD   92 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~   92 (206)
                      .+++|+++.|.|+ |++|+++++.+...|++|++.+|+.++.+.
T Consensus       153 ~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~  195 (300)
T 2rir_A          153 YTIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHLAR  195 (300)
T ss_dssp             SCSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             CCCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            4577999999997 899999999999999999999999876544

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.49  E-value=0.0054  Score=47.61  Aligned_cols=47  Identities=30%  Similarity=0.536  Sum_probs=39.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~   97 (206)
                      .+++| +++|.|+ |++|+++++.|.+.|++|.+.+|+.++.+++.+++
T Consensus       113 ~~l~~-~v~iiG~-G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~  159 (263)
T 2d5c_A          113 IPLKG-PALVLGA-GGAGRAVAFALREAGLEVWVWNRTPQRALALAEEF  159 (263)
T ss_dssp             CCCCS-CEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH
T ss_pred             CCCCC-eEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh
Confidence            35668 8999997 67999999999999999999999988877766554

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=96.48  E-value=0.0082  Score=50.17  Aligned_cols=62  Identities=15%  Similarity=0.236  Sum_probs=48.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh-------------------hhHHHHHHHHHHhcCCceEEEEE
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP-------------------DKLKDVSDSIQAKYAKTQIKSVV  110 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~  110 (206)
                      +++.+|+|.|+ ||+|.++++.|+..|. ++.++|.+.                   .+.+.+++.+++.+++.++....
T Consensus        38 L~~~~VlvvG~-GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~  116 (434)
T 1tt5_B           38 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF  116 (434)
T ss_dssp             HHTCCEEEECS-STHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEE
T ss_pred             hcCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEEe
Confidence            46888999998 6999999999999997 898987541                   46777788888877777776665


Q ss_pred             Eec
Q 028656          111 VDF  113 (206)
Q Consensus       111 ~d~  113 (206)
                      .++
T Consensus       117 ~~i  119 (434)
T 1tt5_B          117 NKI  119 (434)
T ss_dssp             SCG
T ss_pred             ccc
Confidence            443

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.48  E-value=0.062  Score=42.91  Aligned_cols=112  Identities=15%  Similarity=0.215  Sum_probs=65.3

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhc----CCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKY----AKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      ++.|+|+ |.+|.+++..++..|.  +|++.|+++++++....+++...    .+.++.  ..|..           +.+
T Consensus         2 kv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~--~~~~~-----------~a~   67 (314)
T 3nep_X            2 KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVT--GTNDY-----------GPT   67 (314)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEE--EESSS-----------GGG
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEE--ECCCH-----------HHh
Confidence            4788997 9999999999999886  89999999988776666665421    122222  11211           123


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      .  +-|++|.+||.....     ..+.   ...++.|.-    +.+...+.+.+......++++|.
T Consensus        68 ~--~aDvVii~ag~~~kp-----G~~R---~dl~~~N~~----i~~~i~~~i~~~~p~a~vivvtN  119 (314)
T 3nep_X           68 E--DSDVCIITAGLPRSP-----GMSR---DDLLAKNTE----IVGGVTEQFVEGSPDSTIIVVAN  119 (314)
T ss_dssp             T--TCSEEEECCCC------------C---HHHHHHHHH----HHHHHHHHHHTTCTTCEEEECCS
T ss_pred             C--CCCEEEECCCCCCCC-----CCCH---HHHHHhhHH----HHHHHHHHHHHhCCCcEEEecCC
Confidence            3  344999999975431     1122   234555654    44455554554433332565554

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.42  E-value=0.11  Score=41.32  Aligned_cols=46  Identities=22%  Similarity=0.460  Sum_probs=37.8

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQA   99 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~   99 (206)
                      ..++.|.|+ |.+|.+++..++.+|  .+|++.|+++++++....++..
T Consensus         6 ~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~   53 (317)
T 3d0o_A            6 GNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKH   53 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHh
Confidence            457899998 999999999999888  4899999998877765555544

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.42  E-value=0.0059  Score=47.72  Aligned_cols=45  Identities=4%  Similarity=0.149  Sum_probs=39.3

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~   95 (206)
                      ++||+++|.|+++-+|+.+++.|.++|++|.++.++...+++..+
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~~~~  192 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTR  192 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHH
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHHHhhc
Confidence            779999999999989999999999999999999887766665443

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.38  E-value=0.051  Score=43.63  Aligned_cols=47  Identities=19%  Similarity=0.331  Sum_probs=39.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQA   99 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~   99 (206)
                      +..++.|+|| |.+|.+++..++..+.  ++++.|+++++++....++..
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~   56 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSN   56 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHH
Confidence            3467999999 9999999999998775  899999999888877776654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.35  E-value=0.0062  Score=49.17  Aligned_cols=41  Identities=24%  Similarity=0.293  Sum_probs=36.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .|++++|+|+ |++|...++.+...|++|+.+++++++.+.+
T Consensus       176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~  216 (348)
T 3two_A          176 KGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDA  216 (348)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            4889999997 8999998888888999999999999887654

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.34  E-value=0.055  Score=43.04  Aligned_cols=45  Identities=18%  Similarity=0.149  Sum_probs=37.7

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQA   99 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~   99 (206)
                      +++.|+|| |.+|..++..++..|. +|++.|+++++++....++..
T Consensus         3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~   48 (309)
T 1ur5_A            3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYE   48 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHT
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHH
Confidence            46899999 9999999999999996 899999998887765555543

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.33  E-value=0.02  Score=45.72  Aligned_cols=40  Identities=15%  Similarity=0.131  Sum_probs=35.7

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK   89 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~   89 (206)
                      .++.|+++.|.|. |.||+++|+.+...|++|+..+|+.++
T Consensus       138 ~~l~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~  177 (313)
T 2ekl_A          138 LELAGKTIGIVGF-GRIGTKVGIIANAMGMKVLAYDILDIR  177 (313)
T ss_dssp             CCCTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             CCCCCCEEEEEee-CHHHHHHHHHHHHCCCEEEEECCCcch
Confidence            3578999999986 799999999999999999999998754

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.33  E-value=0.0088  Score=47.23  Aligned_cols=43  Identities=26%  Similarity=0.290  Sum_probs=37.6

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKD   92 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~   92 (206)
                      .+++|+++.|.|+ |++|+++++.+...|++|++.+|+.++.+.
T Consensus       151 ~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~  193 (293)
T 3d4o_A          151 FTIHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESDLLAR  193 (293)
T ss_dssp             SCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             CCCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            3567999999996 799999999999999999999999876543

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=96.32  E-value=0.0089  Score=52.22  Aligned_cols=65  Identities=25%  Similarity=0.332  Sum_probs=52.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh-------------------hhHHHHHHHHHHhcCCceEEEE
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP-------------------DKLKDVSDSIQAKYAKTQIKSV  109 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~  109 (206)
                      ++++.+|+|.|+ ||+|.++++.|+..|. ++.++|.+.                   .+.+.+++.++..+++.++...
T Consensus        14 kL~~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~   92 (640)
T 1y8q_B           14 AVAGGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAY   92 (640)
T ss_dssp             HHHHCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEE
T ss_pred             HHhcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEE
Confidence            356889999998 7999999999999996 888988752                   3566677788887788888888


Q ss_pred             EEecCC
Q 028656          110 VVDFSG  115 (206)
Q Consensus       110 ~~d~~~  115 (206)
                      ..++.+
T Consensus        93 ~~~i~~   98 (640)
T 1y8q_B           93 HDSIMN   98 (640)
T ss_dssp             ESCTTS
T ss_pred             ecccch
Confidence            776653

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.31  E-value=0.0064  Score=47.79  Aligned_cols=46  Identities=26%  Similarity=0.395  Sum_probs=39.5

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      ..+++||+++|.|.|+-+|+.+++.|+++|++|.++.+....+++.
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~~~  201 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADH  201 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHHHH
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHHHH
Confidence            4567899999999998899999999999999999998866555543

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.31  E-value=0.0047  Score=46.92  Aligned_cols=39  Identities=13%  Similarity=0.087  Sum_probs=33.0

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .++++|.|+ |.+|+.++++|.+.|+ |++++++++..++.
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~~   47 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKVL   47 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHHH
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHHH
Confidence            457888897 7999999999999999 99999998776544

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.30  E-value=0.024  Score=45.09  Aligned_cols=39  Identities=23%  Similarity=0.261  Sum_probs=35.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK   89 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~   89 (206)
                      +++|+++.|.|. |.||+++|+.+...|++|+..+|+.++
T Consensus       139 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~  177 (307)
T 1wwk_A          139 ELEGKTIGIIGF-GRIGYQVAKIANALGMNILLYDPYPNE  177 (307)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             ccCCceEEEEcc-CHHHHHHHHHHHHCCCEEEEECCCCCh
Confidence            578999999986 799999999999999999999998754

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=96.30  E-value=0.015  Score=47.09  Aligned_cols=64  Identities=20%  Similarity=0.288  Sum_probs=50.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEEE
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIKS  108 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~  108 (206)
                      .++++.+|+|.|+ ||+|.++++.|+..|. ++.++|.+                   ..+.+.+++.+++.++..++..
T Consensus        32 ~~L~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~  110 (346)
T 1y8q_A           32 KRLRASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKV  110 (346)
T ss_dssp             HHHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEE
T ss_pred             HHHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEE
Confidence            3467899999997 6999999999999997 78888643                   2467788888888888877776


Q ss_pred             EEEec
Q 028656          109 VVVDF  113 (206)
Q Consensus       109 ~~~d~  113 (206)
                      ...++
T Consensus       111 ~~~~~  115 (346)
T 1y8q_A          111 DTEDI  115 (346)
T ss_dssp             ECSCG
T ss_pred             Eeccc
Confidence            65544

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.29  E-value=0.043  Score=43.88  Aligned_cols=46  Identities=24%  Similarity=0.472  Sum_probs=39.5

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHh
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAK  100 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~  100 (206)
                      .++.|+|| |.+|.+++..++..+.  ++++.|+++++++....++...
T Consensus         6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~   53 (318)
T 1ez4_A            6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA   53 (318)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGG
T ss_pred             CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHH
Confidence            57999999 9999999999998875  8999999998888777777653

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=96.29  E-value=0.015  Score=46.90  Aligned_cols=76  Identities=16%  Similarity=0.205  Sum_probs=46.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCC-CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|+||+|++|...++.....| .+|+.++ +.++.+.+.     .+ ...+    .| .+.  +..+.+.+..++
T Consensus       142 ~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~g-a~~~----~~-~~~--~~~~~~~~~~~~  207 (349)
T 4a27_A          142 EGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DS-VTHL----FD-RNA--DYVQEVKRISAE  207 (349)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GG-SSEE----EE-TTS--CHHHHHHHHCTT
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cC-CcEE----Ec-CCc--cHHHHHHHhcCC
Confidence            58999999999999998877666665 5777776 445544322     22 2211    23 332  333444444333


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                       .+|+++.++|.
T Consensus       208 -g~Dvv~d~~g~  218 (349)
T 4a27_A          208 -GVDIVLDCLCG  218 (349)
T ss_dssp             -CEEEEEEECC-
T ss_pred             -CceEEEECCCc
Confidence             57899998874

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=96.28  E-value=0.076  Score=42.26  Aligned_cols=73  Identities=16%  Similarity=0.201  Sum_probs=51.4

Q ss_pred             EEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHHHhc---CCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQAKY---AKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      ++.|+|+ |.+|.+++..++..+  .++++.|+++++++..+.++....   .+.++.  . +  +.         +.+.
T Consensus         2 KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~--~-~--~~---------~a~~   66 (310)
T 2xxj_A            2 KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVW--A-G--SY---------GDLE   66 (310)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEE--E-C--CG---------GGGT
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEE--E-C--CH---------HHhC
Confidence            5889998 999999999999887  589999999988887677775531   122222  1 1  11         1233


Q ss_pred             CCCccEEEEeccccC
Q 028656          130 GLDVGVLINNVGISY  144 (206)
Q Consensus       130 ~~~id~lvnnAg~~~  144 (206)
                        +-|++|..+|...
T Consensus        67 --~aD~Vii~ag~~~   79 (310)
T 2xxj_A           67 --GARAVVLAAGVAQ   79 (310)
T ss_dssp             --TEEEEEECCCCCC
T ss_pred             --CCCEEEECCCCCC
Confidence              4569999998754

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.27  E-value=0.024  Score=45.46  Aligned_cols=40  Identities=15%  Similarity=0.098  Sum_probs=32.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcE-EEEEcChhhHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNL-VLVGRNPDKLKD   92 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V-~~~~r~~~~~~~   92 (206)
                      .|++++|.|+ ||+|...++.+...|+++ +.+++++++++.
T Consensus       160 ~g~~VlV~Ga-G~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~  200 (346)
T 4a2c_A          160 ENKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDISSEKLAL  200 (346)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             CCCEEEEECC-CCcchHHHHHHHHcCCcEEEEEechHHHHHH
Confidence            5889999987 899999888888899865 667888877553

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=96.27  E-value=0.1  Score=41.54  Aligned_cols=114  Identities=24%  Similarity=0.263  Sum_probs=65.3

Q ss_pred             EEEEECCCChHHHHHHHHHHHC-C--CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKT-G--LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~-g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      ++.|+||+|.+|.+++..++.+ +  .+++++|+++ +.+....+++..  ..........-++.        .+.+.+ 
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~--~~~~~v~~~~~~~~--------~~~~~~-   69 (312)
T 3hhp_A            2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHI--PTAVKIKGFSGEDA--------TPALEG-   69 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTS--CSSEEEEEECSSCC--------HHHHTT-
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCC--CCCceEEEecCCCc--------HHHhCC-
Confidence            5889999999999999999875 5  4799999987 555555555542  11111111100111        123343 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-CCceEEEecc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGLSMLNIGK  194 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~~iv~isS  194 (206)
                       -|++|..||.....     .++.   .+.++.|..-.-.+.+.+    .+.. .+. ++++|.
T Consensus        70 -aDivii~ag~~rkp-----G~~R---~dll~~N~~I~~~i~~~i----~~~~p~a~-vlvvtN  119 (312)
T 3hhp_A           70 -ADVVLISAGVARKP-----GMDR---SDLFNVNAGIVKNLVQQV----AKTCPKAC-IGIITN  119 (312)
T ss_dssp             -CSEEEECCSCSCCT-----TCCH---HHHHHHHHHHHHHHHHHH----HHHCTTSE-EEECSS
T ss_pred             -CCEEEEeCCCCCCC-----CCCH---HHHHHHHHHHHHHHHHHH----HHHCCCcE-EEEecC
Confidence             44999999975431     2233   344666665444444444    3333 334 666654

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.26  E-value=0.008  Score=47.04  Aligned_cols=45  Identities=18%  Similarity=0.296  Sum_probs=39.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~   97 (206)
                      .+++++|.|+ ||.|++++..|++.|+ +|.+..|+.++.+++.+++
T Consensus       118 ~~~~vlvlGa-Ggaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~  163 (271)
T 1npy_A          118 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY  163 (271)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc
Confidence            4678999996 6999999999999997 8999999999888877665

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.24  E-value=0.0077  Score=47.70  Aligned_cols=44  Identities=20%  Similarity=0.274  Sum_probs=38.2

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK   91 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~   91 (206)
                      ..+++||+++|.|+++-+|+.+++.|.++|++|.++.|....++
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~  203 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTED  203 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHH
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCch
Confidence            45678999999999988999999999999999999988655444

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.23  E-value=0.01  Score=48.24  Aligned_cols=40  Identities=25%  Similarity=0.185  Sum_probs=35.1

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK   89 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~   89 (206)
                      .++.|+++.|.|. |.||+++|+.+...|++|+..+|+...
T Consensus       160 ~~l~gktvGIIG~-G~IG~~vA~~l~~~G~~V~~~dr~~~~  199 (351)
T 3jtm_A          160 YDLEGKTIGTVGA-GRIGKLLLQRLKPFGCNLLYHDRLQMA  199 (351)
T ss_dssp             CCSTTCEEEEECC-SHHHHHHHHHHGGGCCEEEEECSSCCC
T ss_pred             ccccCCEEeEEEe-CHHHHHHHHHHHHCCCEEEEeCCCccC
Confidence            4578999999997 589999999999999999999987533

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.22  E-value=0.011  Score=46.41  Aligned_cols=42  Identities=26%  Similarity=0.327  Sum_probs=36.5

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDS   96 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~   96 (206)
                      +++.|.|+ |.+|..+|+.+++.|++|++.+|+++++++..+.
T Consensus         5 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~   46 (283)
T 4e12_A            5 TNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKR   46 (283)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Confidence            56777776 7899999999999999999999999887776655

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.20  E-value=0.027  Score=44.46  Aligned_cols=38  Identities=24%  Similarity=0.326  Sum_probs=34.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD   88 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~   88 (206)
                      +++|+++.|.|. |.||+++|+.+...|++|+..+|+.+
T Consensus       119 ~l~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  156 (290)
T 3gvx_A          119 LLYGKALGILGY-GGIGRRVAHLAKAFGMRVIAYTRSSV  156 (290)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSCC
T ss_pred             eeecchheeecc-CchhHHHHHHHHhhCcEEEEEecccc
Confidence            478999999987 69999999999999999999999763

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.20  E-value=0.0066  Score=47.71  Aligned_cols=45  Identities=22%  Similarity=0.384  Sum_probs=38.7

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKD   92 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~   92 (206)
                      ..+++||+++|.|+++-+|+.+++.|.++|++|.++.+....+++
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~  200 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKS  200 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHH
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHH
Confidence            456789999999999889999999999999999999876655543

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.17  E-value=0.0095  Score=46.87  Aligned_cols=48  Identities=21%  Similarity=0.419  Sum_probs=41.0

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~   95 (206)
                      ..+++|++++|.|+|.-+|+.+++.|.++|++|.++.+....+++..+
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~  201 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVE  201 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHHH
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHHHHhc
Confidence            356789999999999889999999999999999999888766655443

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.15  E-value=0.031  Score=46.23  Aligned_cols=43  Identities=14%  Similarity=0.093  Sum_probs=38.2

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS   94 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~   94 (206)
                      ..+.+|+|.|+ |.+|...++.+...|++|++.+++.++++.+.
T Consensus       188 v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~  230 (405)
T 4dio_A          188 VPAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQVA  230 (405)
T ss_dssp             ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHHH
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            46889999999 69999999999999999999999998876554

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=96.11  E-value=0.0072  Score=46.81  Aligned_cols=42  Identities=19%  Similarity=0.391  Sum_probs=36.4

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVS   94 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~   94 (206)
                      +++ +++|.|+ ||.|+++++.|++.|+ +|.+.+|+.++.+++.
T Consensus       107 ~~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la  149 (253)
T 3u62_A          107 VKE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKALD  149 (253)
T ss_dssp             CCS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCC
T ss_pred             CCC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            467 8999987 7999999999999998 8999999988766544

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.06  E-value=0.009  Score=47.31  Aligned_cols=46  Identities=15%  Similarity=0.167  Sum_probs=39.8

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      ..+++|++++|.|++.-+|+.+++.|.++|++|.++.+....+++.
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~  205 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEE  205 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHH
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHHHH
Confidence            4567899999999998899999999999999999998776665543

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.05  E-value=0.061  Score=43.32  Aligned_cols=40  Identities=15%  Similarity=0.122  Sum_probs=35.4

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK   89 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~   89 (206)
                      .+++|+++.|.|- |.||+++|+.+...|++|+..+|+.++
T Consensus       161 ~~l~g~tvgIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~  200 (335)
T 2g76_A          161 TELNGKTLGILGL-GRIGREVATRMQSFGMKTIGYDPIISP  200 (335)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSSCH
T ss_pred             cCCCcCEEEEEeE-CHHHHHHHHHHHHCCCEEEEECCCcch
Confidence            3578999999987 799999999999999999999987654

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.05  E-value=0.078  Score=42.00  Aligned_cols=43  Identities=33%  Similarity=0.447  Sum_probs=36.3

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQ   98 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~   98 (206)
                      ++.|.|+ |.+|..++..++..|.  +|++.|+++++++....++.
T Consensus         2 kI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~   46 (304)
T 2v6b_A            2 KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIA   46 (304)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHT
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhh
Confidence            5889998 8999999999999998  89999999887765555443

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.99  E-value=0.0094  Score=47.35  Aligned_cols=40  Identities=15%  Similarity=0.091  Sum_probs=34.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .|++++|+|| |++|...++.....|++|+.++ ++++.+.+
T Consensus       142 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~  181 (315)
T 3goh_A          142 KQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-ASLSQALA  181 (315)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-SSCCHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-ChhhHHHH
Confidence            5899999999 9999998888878899999999 77776654

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=95.97  E-value=0.029  Score=45.39  Aligned_cols=38  Identities=21%  Similarity=0.239  Sum_probs=34.5

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .+++||++.|.|- |.||+++|+.+...|++|+..+|+.
T Consensus       169 ~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~dr~~  206 (345)
T 4g2n_A          169 MGLTGRRLGIFGM-GRIGRAIATRARGFGLAIHYHNRTR  206 (345)
T ss_dssp             CCCTTCEEEEESC-SHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cccCCCEEEEEEe-ChhHHHHHHHHHHCCCEEEEECCCC
Confidence            3478999999997 6999999999999999999999975

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=95.97  E-value=0.024  Score=44.78  Aligned_cols=36  Identities=19%  Similarity=0.234  Sum_probs=32.5

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD   88 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~   88 (206)
                      .+++.|.||.|.+|.++++.|++.|++|.+.+|+++
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            457999998999999999999999999999998764

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=95.97  E-value=0.0061  Score=48.98  Aligned_cols=38  Identities=24%  Similarity=0.299  Sum_probs=34.4

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .+++|+++.|.|. |.||+++|+.+...|++|+..+|+.
T Consensus       136 ~~l~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~~~dr~~  173 (324)
T 3hg7_A          136 QGLKGRTLLILGT-GSIGQHIAHTGKHFGMKVLGVSRSG  173 (324)
T ss_dssp             CCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccccceEEEEEE-CHHHHHHHHHHHhCCCEEEEEcCCh
Confidence            4588999999998 5899999999999999999999875

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=95.95  E-value=0.014  Score=45.80  Aligned_cols=42  Identities=10%  Similarity=0.209  Sum_probs=36.9

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~   95 (206)
                      +++.|.|++|.+|.++++.|++.|++|++.+|++++.+++.+
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~   53 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG   53 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh
Confidence            479999999999999999999999999999999887766543

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.94  E-value=0.018  Score=45.56  Aligned_cols=41  Identities=29%  Similarity=0.319  Sum_probs=35.8

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~   95 (206)
                      +++.|.|+ |.+|.++|..+++.|++|++.+|+++++++..+
T Consensus        16 ~~I~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~   56 (302)
T 1f0y_A           16 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKK   56 (302)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence            56888888 799999999999999999999999987776543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.93  E-value=0.023  Score=47.18  Aligned_cols=41  Identities=20%  Similarity=0.470  Sum_probs=35.6

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS   94 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~   94 (206)
                      +.+++|.|. |.+|+.+++.|.+.|.+|+++++++++.+++.
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~   44 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIETLR   44 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHH
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence            346888887 67999999999999999999999998877654

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=95.92  E-value=0.015  Score=47.08  Aligned_cols=39  Identities=21%  Similarity=0.206  Sum_probs=35.0

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD   88 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~   88 (206)
                      .+++||++.|.|. |.||+++|+.+...|++|+..+|+.+
T Consensus       167 ~~l~gktiGIIGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  205 (340)
T 4dgs_A          167 HSPKGKRIGVLGL-GQIGRALASRAEAFGMSVRYWNRSTL  205 (340)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             ccccCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCcc
Confidence            3578999999998 69999999999999999999998764

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=95.92  E-value=0.017  Score=46.58  Aligned_cols=39  Identities=18%  Similarity=0.284  Sum_probs=35.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK   89 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~   89 (206)
                      ++.|+++.|.|. |.||+++|+.+...|++|++.+|+.++
T Consensus       147 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~  185 (334)
T 2dbq_A          147 DVYGKTIGIIGL-GRIGQAIAKRAKGFNMRILYYSRTRKE  185 (334)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHhCCCEEEEECCCcch
Confidence            578999999986 899999999999999999999998765

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=95.91  E-value=0.016  Score=47.99  Aligned_cols=42  Identities=14%  Similarity=0.064  Sum_probs=38.0

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      +.+++++|+|+ |.+|+..++.+...|++|++++++.++++..
T Consensus       170 l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          170 VPPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            56999999997 7999999999999999999999999887664

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=95.90  E-value=0.19  Score=40.00  Aligned_cols=78  Identities=19%  Similarity=0.302  Sum_probs=51.6

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcCC--ceEEEEEEecCCCchHHHHHHHHHh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYAK--TQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      .+++.|+|+ |.+|.+++..++..|.  +|++.|+++++++....++....+.  ....... |   .        .+.+
T Consensus         6 ~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~---~--------~~al   72 (316)
T 1ldn_A            6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G---D--------YDDC   72 (316)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C---C--------GGGT
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C---c--------HHHh
Confidence            357999999 8999999999988774  7999999988766655556543221  1122221 1   1        0123


Q ss_pred             cCCCccEEEEeccccCC
Q 028656          129 EGLDVGVLINNVGISYP  145 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~  145 (206)
                      .  +-|++|.++|+...
T Consensus        73 ~--~aDvViia~~~~~~   87 (316)
T 1ldn_A           73 R--DADLVVICAGANQK   87 (316)
T ss_dssp             T--TCSEEEECCSCCCC
T ss_pred             C--CCCEEEEcCCCCCC
Confidence            3  34599999987653

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=95.82  E-value=0.016  Score=43.58  Aligned_cols=40  Identities=23%  Similarity=0.421  Sum_probs=34.1

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .+++.|.| .|.+|.++++.+++.|++|.+.+|+.++.+++
T Consensus        28 ~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~   67 (215)
T 2vns_A           28 APKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKRTARL   67 (215)
T ss_dssp             -CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHHHHHH
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            45688888 78999999999999999999999998776544

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=95.81  E-value=0.017  Score=49.06  Aligned_cols=43  Identities=19%  Similarity=0.211  Sum_probs=38.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      ...|++++|.|+ |.||+.+++.+...|++|+++++++.+.+..
T Consensus       271 ~l~GktV~IiG~-G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A  313 (494)
T 3ce6_A          271 LIGGKKVLICGY-GDVGKGCAEAMKGQGARVSVTEIDPINALQA  313 (494)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCcCEEEEEcc-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            467999999997 8999999999999999999999998776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	206
d1xg5a_	257	c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41	9e-24
d1xkqa_	272	c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh	1e-20
d1yb1a_	244	c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase	2e-20
d1spxa_	264	c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato	8e-20
d1zk4a1	251	c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase	1e-19
d2gdza1	254	c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog	3e-19
d1wmaa1	275	c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox	3e-19
d1xq1a_	259	c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara	9e-19
d1yo6a1	250	c.2.1.2 (A:1-250) Putative carbonyl reductase snif	9e-19
d2ew8a1	247	c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas	1e-18
d2bgka1	268	c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de	2e-18
d1pr9a_	244	c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie	3e-18
d1cyda_	242	c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul	3e-18
d2d1ya1	248	c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T	2e-17
d2ae2a_	259	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	2e-17
d1oaaa_	259	c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus	1e-16
d1hdca_	254	c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr	1e-16
d1gz6a_	302	c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do	2e-16
d1bdba_	276	c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy	2e-16
d1ydea1	250	c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase	4e-16
d1xhla_	274	c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh	6e-16
d1h5qa_	260	c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga	3e-15
d1hxha_	253	c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge	3e-15
d1yxma1	297	c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re	6e-15
d1zmta1	252	c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag	7e-15
d1vl8a_	251	c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga	1e-14
d1iy8a_	258	c.2.1.2 (A:) Levodione reductase {Corynebacterium	2e-14
d2bd0a1	240	c.2.1.2 (A:2-241) Bacterial sepiapterin reductase	2e-14
d1xu9a_	269	c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase	7e-14
d1sbya1	254	c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase	1e-13
d2rhca1	257	c.2.1.2 (A:5-261) beta-keto acyl carrier protein r	1e-13
d1ulsa_	242	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	2e-13
d1fmca_	255	c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase	2e-13
d2ag5a1	245	c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami	8e-13
d1ae1a_	258	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	2e-12
d1k2wa_	256	c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s	4e-12
d1q7ba_	243	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	5e-12
d1edoa_	244	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	8e-12
d1gega_	255	c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl	1e-11
d2c07a1	251	c.2.1.2 (A:54-304) beta-keto acyl carrier protein	1e-11
d1ja9a_	259	c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc	2e-11
d1nffa_	244	c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob	3e-11
d1geea_	261	c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat	4e-11
d1mxha_	266	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	4e-11
d1snya_	248	c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly	6e-11
d1fjha_	257	c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase	8e-11
d1g0oa_	272	c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase	9e-11
d1jtva_	285	c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi	1e-10
d1zema1	260	c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba	2e-10
d1ulua_	256	c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermoph	2e-10
d2a4ka1	241	c.2.1.2 (A:2-242) beta-keto acyl carrier protein r	4e-10
d1dhra_	236	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	7e-10
d1o5ia_	234	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	1e-09
d1w6ua_	294	c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr	1e-09
d1ooea_	235	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	2e-09
d1x1ta1	260	c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge	3e-09
d1e7wa_	284	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	3e-08
d1uzma1	237	c.2.1.2 (A:9-245) beta-keto acyl carrier protein r	5e-08
d2o23a1	248	c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr	9e-07
d1qsga_	258	c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli	1e-06
d1uaya_	241	c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena	4e-06
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	5e-06
d2pd4a1	274	c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacte	6e-06
d2fr1a1	259	c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI	7e-06
d2h7ma1	268	c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacteri	3e-05
d1d7oa_	297	c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (B	4e-05
d1luaa1	191	c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter	1e-04
d1uh5a_	329	c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite	2e-04
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	5e-04
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	0.003

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (230), Expect = 9e-24
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 7/141 (4%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG + GIG + A  L + GL +V   R    +++++   ++      +     D S 
Sbjct: 13  ALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN 72

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             D+      I+    G+D  + INN G++ P             K++  VNV   +  T
Sbjct: 73  EEDILSMFSAIRSQHSGVD--ICINNAGLARP--DTLLSGSTSGWKDMFNVNVLALSICT 128

Query: 174 QAVLPGMLKRK-KGLSMLNIG 193
           +     M +R      ++NI 
Sbjct: 129 REAYQSMKERNVDDGHIININ 149

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 85.1 bits (210), Expect = 1e-20
 Identities = 35/156 (22%), Positives = 76/156 (48%), Gaps = 7/156 (4%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI-QAKYAKTQIKSVVVDFS 114
            ++TG ++GIG++ A   A+ G N+ + GR+ ++L++    I ++  ++ Q+ SVV D +
Sbjct: 8   VIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVT 67

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYP--YARFFHEVDQVLLKNLIKVNVEGTT 170
                D+ +    +    +D  VL+NN G + P  +     +    +    +K+N++   
Sbjct: 68  TEDGQDQIINSTLKQFGKID--VLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVI 125

Query: 171 KVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFHYM 206
           ++T+ V P ++  K  +  ++   A       F Y 
Sbjct: 126 EMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFLYY 161

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (206), Expect = 2e-20
 Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 4/134 (2%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G   L+TG   GIG+  A++ AK    LVL   N   L++ +   +   AK     V   
Sbjct: 7   GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCS 66

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
              D+    +++K  I  +   +L+NN G+ Y    F  +  Q  ++   +VNV      
Sbjct: 67  NREDIYSSAKKVKAEIGDVS--ILVNNAGVVYTSDLFATQDPQ--IEKTFEVNVLAHFWT 122

Query: 173 TQAVLPGMLKRKKG 186
           T+A LP M K   G
Sbjct: 123 TKAFLPAMTKNNHG 136

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 82.3 bits (203), Expect = 8e-20
 Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAK-YAKTQIKSVVVDFS 114
           A++TG ++GIG++ A   A+ G  + + GR+ ++L++    I A   ++  + SVV D +
Sbjct: 8   AIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVT 67

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYAR--FFHEVDQVLLKNLIKVNVEGTT 170
                DE +         LD  +L+NN G + P ++               + +N+    
Sbjct: 68  TDAGQDEILSTTLGKFGKLD--ILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVI 125

Query: 171 KVTQAVLPGMLKRK 184
            +T+  +P +   K
Sbjct: 126 ALTKKAVPHLSSTK 139

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

 Score = 81.6 bits (201), Expect = 1e-19
 Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 5/137 (3%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A++TG T GIG + A +  + G  +++ GR+ D  +  + S+         +    D   
Sbjct: 9   AIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDED- 67

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
              +  +  ++A   +    L+NN GI+    +   E      + L+ VN++G    T+ 
Sbjct: 68  GWTKLFDATEKAFGPVS--TLVNNAGIAVN--KSVEETTTAEWRKLLAVNLDGVFFGTRL 123

Query: 176 VLPGMLKRKKGLSMLNI 192
            +  M  +  G S++N+
Sbjct: 124 GIQRMKNKGLGASIINM 140

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (198), Expect = 3e-19
 Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 14/136 (10%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG   GIG++FA  L   G  + LV  N +       ++  ++   +   +  D
Sbjct: 3   GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCD 62

Query: 113 FS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTT 170
            +    L +   ++ +    LD  +L+NN G++                  +++N+    
Sbjct: 63  VADQQQLRDTFRKVVDHFGRLD--ILVNNAGVNNEKNWEKT----------LQINLVSVI 110

Query: 171 KVTQAVLPGMLKRKKG 186
             T   L  M K+  G
Sbjct: 111 SGTYLGLDYMSKQNGG 126

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (199), Expect = 3e-19
 Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 56  ALVTGPTDGIGKSFAFQLAK-TGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           ALVTG   GIG +    L +    ++VL  R+  + +     +QA+    +   + +D  
Sbjct: 6   ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDL 65

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
             +    + +++   GLD  VL+NN GI++           +  +  +K N  GT  V  
Sbjct: 66  QSIRALRDFLRKEYGGLD--VLVNNAGIAFK--VADPTPFHIQAEVTMKTNFFGTRDVCT 121

Query: 175 AVLPGMLKRKKGLSMLNIG 193
            +LP +  + + +++ +I 
Sbjct: 122 ELLPLIKPQGRVVNVSSIM 140

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 79.7 bits (196), Expect = 9e-19
 Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 3/129 (2%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            LVTG T GIG +   + A  G  +    RN  +L +     Q K  +            
Sbjct: 11  VLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRP 70

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           + ++ ++ +     G  + +LINN+G          +         I  N+E    ++Q 
Sbjct: 71  EREKLMQTVSSMFGG-KLDILINNLGAIRSKP--TLDYTAEDFSFHISTNLESAYHLSQL 127

Query: 176 VLPGMLKRK 184
             P +    
Sbjct: 128 AHPLLKASG 136

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 79.5 bits (195), Expect = 9e-19
 Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 10/137 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF 113
            +VTG   GIG     QL K     +++   R+ +K  ++     ++     +  + +  
Sbjct: 6   VVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSR-----VHVLPLTV 60

Query: 114 S--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
           +    LD  V ++ E +    + +LINN G+   Y     E ++ ++   + VN      
Sbjct: 61  TCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYG-TNTEPNRAVIAEQLDVNTTSVVL 119

Query: 172 VTQAVLPGMLKRKKGLS 188
           +TQ +LP +       S
Sbjct: 120 LTQKLLPLLKNAASKES 136

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

 Score = 79.2 bits (195), Expect = 1e-18
 Identities = 31/153 (20%), Positives = 64/153 (41%), Gaps = 10/153 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A++TG  +GIG++ A + A  G ++ +    P    +       +    ++ +V  D S 
Sbjct: 8   AVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA----AIRNLGRRVLTVKCDVSQ 63

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
            GD++   +++       D  +L+NN GI       F E+     K   ++NV+    + 
Sbjct: 64  PGDVEAFGKQVISTFGRCD--ILVNNAGIYPLIP--FDELTFEQWKKTFEINVDSGFLMA 119

Query: 174 QAVLPGMLKRKKGLSMLNIGKAELMCSVRFHYM 206
           +A +PGM +   G  +        +    + + 
Sbjct: 120 KAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHY 152

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

 Score = 79.0 bits (194), Expect = 2e-18
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 3/151 (1%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A++TG   GIG++ A    + G  +V+     D  + V ++I +    + +   V     
Sbjct: 9   AIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDE- 67

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           D+   V+        LD  ++  NVG+         E      K ++ +NV G   V + 
Sbjct: 68  DVRNLVDTTIAKHGKLD--IMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKH 125

Query: 176 VLPGMLKRKKGLSMLNIGKAELMCSVRFHYM 206
               M+  KKG  +     +         ++
Sbjct: 126 AARVMIPAKKGSIVFTASISSFTAGEGVSHV 156

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (191), Expect = 3e-18
 Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 14/153 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            LVTG   GIG+     L  TG  +V V R    L  +            I+ V VD   
Sbjct: 10  VLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPG------IEPVCVDLGD 63

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
              E  ER   ++  +D  +L+NN  ++    + F EV +       +VN+    +V+Q 
Sbjct: 64  --WEATERALGSVGPVD--LLVNNAAVALL--QPFLEVTKEAFDRSFEVNLRAVIQVSQI 117

Query: 176 VLPGMLKRKKGLSMLNIGK--AELMCSVRFHYM 206
           V  G++ R    +++N+    ++   +    Y 
Sbjct: 118 VARGLIARGVPGAIVNVSSQCSQRAVTNHSVYC 150

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.7 bits (191), Expect = 3e-18
 Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 12/139 (8%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG   GIG+     L  +G  +V V R    L  ++           I+ V VD
Sbjct: 5   GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPG------IEPVCVD 58

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
              D D   E+    I  +D  +L+NN  +     + F EV +        VN+    +V
Sbjct: 59  LG-DWDA-TEKALGGIGPVD--LLVNNAALVIM--QPFLEVTKEAFDRSFSVNLRSVFQV 112

Query: 173 TQAVLPGMLKRKKGLSMLN 191
           +Q V   M+ R    S++N
Sbjct: 113 SQMVARDMINRGVPGSIVN 131

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

 Score = 75.6 bits (186), Expect = 2e-17
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 14/131 (10%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            LVTG   GIG++ A   A+ G  + L    P+  K+V+++I   +         VD   
Sbjct: 8   VLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGGAF-------FQVDLED 59

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             +    VE    A+  +D  VL+NN  I+ P +     V     + +++VN+     ++
Sbjct: 60  ERERVRFVEEAAYALGRVD--VLVNNAAIAAPGS--ALTVRLPEWRRVLEVNLTAPMHLS 115

Query: 174 QAVLPGMLKRK 184
                 M K  
Sbjct: 116 ALAAREMRKVG 126

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

 Score = 75.8 bits (186), Expect = 2e-17
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 3/133 (2%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + GIG     +LA  G ++    RN  +L D     ++K  K +     + 
Sbjct: 8   GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLS 67

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
              +  E +  +     G  + +L+NN GI     +   +        ++ +N E    +
Sbjct: 68  SRSERQELMNTVANHFHG-KLNILVNNAGIVIY--KEAKDYTVEDYSLIMSINFEAAYHL 124

Query: 173 TQAVLPGMLKRKK 185
           +    P +   ++
Sbjct: 125 SVLAHPFLKASER 137

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.7 bits (180), Expect = 1e-16
 Identities = 27/142 (19%), Positives = 57/142 (40%), Gaps = 8/142 (5%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKT---GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSV 109
            +  ++TG + G G++ A QLA+    G  +++  R+   L+ + + + A+    ++   
Sbjct: 6   CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLA 65

Query: 110 VVDFS--GDLDEGVERIKE--AIEGLDVGVLINNVGISYPYAR-FFHEVDQVLLKNLIKV 164
             D      +   +  ++E    EGL   +LINN       ++ F +  D   + N   +
Sbjct: 66  AADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWAL 125

Query: 165 NVEGTTKVTQAVLPGMLKRKKG 186
           N+     +T   L         
Sbjct: 126 NLTSMLCLTSGTLNAFQDSPGL 147

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

 Score = 73.5 bits (180), Expect = 1e-16
 Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 12/139 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            ++TG   G+G   A Q    G  +VL     ++    +  +         +   +D + 
Sbjct: 8   VIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDA-----ARYQHLDVTI 62

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             D    V   +E    +D   L+NN GIS         V++   + ++++N+ G     
Sbjct: 63  EEDWQRVVAYAREEFGSVD--GLVNNAGISTGMFLETESVERF--RKVVEINLTGVFIGM 118

Query: 174 QAVLPGMLKRKKGLSMLNI 192
           + V+P M     G S++NI
Sbjct: 119 KTVIPAMKDAGGG-SIVNI 136

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.9 bits (181), Expect = 2e-16
 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 11/144 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKS---VVVD 112
            LVTG   G+G+++A   A+ G  +V+     D       S  A     +I+      V 
Sbjct: 10  VLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVA 69

Query: 113 FSGDLDEGVERIKEAIE---GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
               ++ G + +K A++    +D  V++NN GI     R F  +       + +V++ G+
Sbjct: 70  NYDSVEAGEKLVKTALDTFGRID--VVVNNAGILRD--RSFSRISDEDWDIIQRVHLRGS 125

Query: 170 TKVTQAVLPGMLKRKKGLSMLNIG 193
            +VT+A    M K+  G  ++   
Sbjct: 126 FQVTRAAWDHMKKQNYG-RIIMTA 148

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

 Score = 73.5 bits (180), Expect = 2e-16
 Identities = 22/136 (16%), Positives = 50/136 (36%), Gaps = 12/136 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            L+TG   G+G++   +    G  + ++ ++ ++L ++            +  +V D   
Sbjct: 8   VLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAEL-----ETDHGDNVLGIVGDVRS 62

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLL---KNLIKVNVEGTT 170
             D  +   R       +D  +   N GI           ++ L      +  +NV+G  
Sbjct: 63  LEDQKQAASRCVARFGKIDTLI--PNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYI 120

Query: 171 KVTQAVLPGMLKRKKG 186
              +A LP ++  +  
Sbjct: 121 HAVKACLPALVASRGN 136

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (177), Expect = 4e-16
 Identities = 26/152 (17%), Positives = 55/152 (36%), Gaps = 11/152 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            +VTG   GIG         +G  +V+  ++    + +   +           ++ D + 
Sbjct: 9   VVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVF------ILCDVTQ 62

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             D+   V         LD  V   N    +P  +   E      + L+++N+ GT  +T
Sbjct: 63  EDDVKTLVSETIRRFGRLDCVV---NNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLT 119

Query: 174 QAVLPGMLKRKKGLSMLNIGKAELMCSVRFHY 205
           +  LP + K +  +  ++     +  +    Y
Sbjct: 120 KLALPYLRKSQGNVINISSLVGAIGQAQAVPY 151

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 72.0 bits (176), Expect = 6e-16
 Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 5/150 (3%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAK-TQIKSVVV 111
           G   ++TG ++GIG+S A   AK G  + + GRN D+L++    I        +I +VV 
Sbjct: 4   GKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVA 63

Query: 112 DFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
           D +     D+ +         +D  +L+NN G +        +    L +   K+N +  
Sbjct: 64  DVTEASGQDDIINTTLAKFGKID--ILVNNAGANLADGTANTDQPVELYQKTFKLNFQAV 121

Query: 170 TKVTQAVLPGMLKRKKGLSMLNIGKAELMC 199
            ++TQ     ++K K  +  ++   A    
Sbjct: 122 IEMTQKTKEHLIKTKGEIVNVSSIVAGPQA 151

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

 Score = 69.7 bits (170), Expect = 3e-15
 Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 7/153 (4%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            +VTG   GIG +F   +A  G N+ ++ R+     +V++ +  ++   + K+   D S 
Sbjct: 12  IIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSN 70

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              + + +++I   +  +    LI N G+S        E+       +  VNV G     
Sbjct: 71  TDIVTKTIQQIDADLGPIS--GLIANAGVSVVKP--ATELTHEDFAFVYDVNVFGVFNTC 126

Query: 174 QAVLPGMLKRKKGLSMLNIGKAELMCSVRFHYM 206
           +AV    L++++  S++           +    
Sbjct: 127 RAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLN 159

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score = 69.6 bits (170), Expect = 3e-15
 Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 13/139 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG   G+G      L   G  +     N    + ++  +  +        V  D S 
Sbjct: 9   ALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGER-----SMFVRHDVSS 63

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             D    +  ++  +  L+  VL+NN GI  P               L+K+N E      
Sbjct: 64  EADWTLVMAAVQRRLGTLN--VLVNNAGILLP--GDMETGRLEDFSRLLKINTESVFIGC 119

Query: 174 QAVLPGMLKRKKGLSMLNI 192
           Q  +  M  ++ G S++N+
Sbjct: 120 QQGIAAM--KETGGSIINM 136

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (169), Expect = 6e-15
 Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 7/138 (5%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  A+VTG   GIGK+   +L + G N+V+  R  ++LK  +D +QA    T+ ++ V+ 
Sbjct: 12  GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTK-QARVIP 70

Query: 113 FSGDL--DEGVERIKEAI--EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEG 168
              ++  +E V  + ++       +  L+NN G  +        +       +++ N+ G
Sbjct: 71  IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFL--SPAEHISSKGWHAVLETNLTG 128

Query: 169 TTKVTQAVLPGMLKRKKG 186
           T  + +AV    +K   G
Sbjct: 129 TFYMCKAVYSSWMKEHGG 146

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 68.5 bits (167), Expect = 7e-15
 Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 9/151 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A+VT      G   A +L++ G  +     +  +  ++       +A+T  +   +    
Sbjct: 3   AIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDEL-----EAFAETYPQLKPMSEQ- 56

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           +  E +E +  A   +D  VL++N   +  +     +      +  ++        +  A
Sbjct: 57  EPAELIEAVTSAYGQVD--VLVSNDIFAPEFQP-IDKYAVEDYRGAVEALQIRPFALVNA 113

Query: 176 VLPGMLKRKKGLSMLNIGKAELMCSVRFHYM 206
           V   M KRK G  +                 
Sbjct: 114 VASQMKKRKSGHIIFITSATPFGPWKELSTY 144

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 68.1 bits (166), Expect = 1e-14
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG + G+G   A  LA+ G ++V+  RN ++  + +  +  KY   +  +   D S 
Sbjct: 8   ALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSN 66

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYP 145
             ++ + +E +KE    LD   ++N  GI+  
Sbjct: 67  YEEVKKLLEAVKEKFGKLD--TVVNAAGINRR 96

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

 Score = 67.8 bits (165), Expect = 2e-14
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 4/102 (3%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            L+TG   G+G++ A +LA  G  L LV  + + L+    ++       ++ + V D S 
Sbjct: 7   VLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD 66

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQ 155
              ++  V    E    +D     NN GI             
Sbjct: 67  EAQVEAYVTATTERFGRID--GFFNNAGIEGKQNPTESFTAA 106

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

 Score = 67.1 bits (163), Expect = 2e-14
 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 11/138 (7%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLN-------LVLVGRNPDKLKDVSDSIQAKYAKTQIKS 108
            L+TG   GIG++ A + A+   +       LVL  R    L+ +S   +A+ A T   +
Sbjct: 4   LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTIT 63

Query: 109 VVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEG 168
             +    D+      I E    +D    +NN G+    A      +       +  N++G
Sbjct: 64  ADISDMADVRRLTTHIVERYGHIDCL--VNNAGVGRFGALSDLTEEDF--DYTMNTNLKG 119

Query: 169 TTKVTQAVLPGMLKRKKG 186
           T  +TQA+   M ++  G
Sbjct: 120 TFFLTQALFALMERQHSG 137

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (160), Expect = 7e-14
 Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 4/134 (2%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G   +VTG + GIG+  A+ LAK G ++V+  R+ + L+ V        A +     +  
Sbjct: 14  GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAH--YIAG 71

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
              D+    + + +A + +    ++    I+          D   ++  ++VN      +
Sbjct: 72  TMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLN-LFHDDIHHVRKSMEVNFLSYVVL 130

Query: 173 TQAVLPGMLKRKKG 186
           T A LP MLK+  G
Sbjct: 131 TVAALP-MLKQSNG 143

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

 Score = 65.4 bits (159), Expect = 1e-13
 Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 12/129 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            +      GIG   + +L K  L   ++    +    +++ ++A   K  I     D + 
Sbjct: 8   VIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAE-LKAINPKVNITFHTYDVTV 66

Query: 116 DLDEGVERIKEAIEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
            + E  + +K+  + L  V +LIN  GI        H++++      I +N  G    T 
Sbjct: 67  PVAESKKLLKKIFDQLKTVDILINGAGILDD-----HQIERT-----IAINFTGLVNTTT 116

Query: 175 AVLPGMLKR 183
           A+L    KR
Sbjct: 117 AILDFWDKR 125

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 65.1 bits (158), Expect = 1e-13
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 4/131 (3%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG T GIG   A +L K GL + +  R  + L+     ++    +   ++  V    
Sbjct: 5   ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVP 64

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           +++  V  + E    +DV V  NN G     A    E+   L  ++++ N+ G  +VT+ 
Sbjct: 65  EIEALVAAVVERYGPVDVLV--NNAGRPGGGA--TAELADELWLDVVETNLTGVFRVTKQ 120

Query: 176 VLPGMLKRKKG 186
           VL      ++G
Sbjct: 121 VLKAGGMLERG 131

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 64.7 bits (157), Expect = 2e-13
 Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 13/152 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            L+TG   GIG++     AK G  LV        L++ ++++ A         VV+D + 
Sbjct: 8   VLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHP-------VVMDVAD 60

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              ++ G       +  LD   +++  GI+     F  ++     + +++VN+ G+  V 
Sbjct: 61  PASVERGFAEALAHLGRLD--GVVHYAGITRD--NFHWKMPLEDWELVLRVNLTGSFLVA 116

Query: 174 QAVLPGMLKRKKGLSMLNIGKAELMCSVRFHY 205
           +A    M ++  G  +L   +  L    + +Y
Sbjct: 117 KAASEAMREKNPGSIVLTASRVYLGNLGQANY 148

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 64.7 bits (157), Expect = 2e-13
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 48  NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIK 107
           NLR  G  A++TG   GIGK  A   A  G ++V+   N D    V D IQ    +    
Sbjct: 6   NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQ--AF 63

Query: 108 SVVVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYP 145
           +   D +   +L    +     +  +D  +L+NN G   P
Sbjct: 64  ACRCDITSEQELSALADFAISKLGKVD--ILVNNAGGGGP 101

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 8e-13
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 13/131 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            ++T    GIG++ A   A+ G  ++    N  KL+++      +               
Sbjct: 9   IILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVL----------- 57

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           D+ +  +  + A E   + VL N  G  +       + ++      + +NV     + +A
Sbjct: 58  DVTKKKQIDQFANEVERLDVLFNVAGFVHH--GTVLDCEEKDWDFSMNLNVRSMYLMIKA 115

Query: 176 VLPGMLKRKKG 186
            LP ML +K G
Sbjct: 116 FLPKMLAQKSG 126

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

 Score = 61.7 bits (149), Expect = 2e-12
 Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 3/119 (2%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG + GIG +   +LA  G  +    RN  +L +  +  + K    +     +    
Sbjct: 9   ALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRT 68

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
           + D+ ++ +    +G    +L+NN G+         +  +     ++  N E    ++Q
Sbjct: 69  ERDKLMQTVAHVFDGKL-NILVNNAGVVIHKE--AKDFTEKDYNIIMGTNFEAAYHLSQ 124

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 61.4 bits (148), Expect = 4e-12
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 11/133 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           AL+TG   GIG++FA    + G  + +   N +  +  +  I          ++ +D + 
Sbjct: 8   ALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPA-----ACAIALDVTD 62

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
              +D  V  + +    +D+ V                E+ +     L  +NV GT  + 
Sbjct: 63  QASIDRCVAELLDRWGSIDILVNNAA----LFDLAPIVEITRESYDRLFAINVSGTLFMM 118

Query: 174 QAVLPGMLKRKKG 186
           QAV   M+   +G
Sbjct: 119 QAVARAMIAGGRG 131

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

 Score = 60.9 bits (147), Expect = 5e-12
 Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 8/141 (5%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           G  ALVTG + GIG++ A  LA  G  ++    + +  + +SD + A       K ++++
Sbjct: 4   GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANG-----KGLMLN 58

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
            +          K   E  +V +L+NN GI+        + ++    ++I+ N+    ++
Sbjct: 59  VTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEW--NDIIETNLSSVFRL 116

Query: 173 TQAVLPGMLKRKKGLSMLNIG 193
           ++AV+  M+K++ G  ++ IG
Sbjct: 117 SKAVMRAMMKKRHG-RIITIG 136

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

 Score = 60.1 bits (145), Expect = 8e-12
 Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS 114
            +VTG + GIGK+ A  L K G  +++   R+    ++VS  I+A   +       V   
Sbjct: 4   VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKE 63

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
            D++  ++   +A   +D    +               + +     +I +N+ G    TQ
Sbjct: 64  ADVEAMMKTAIDAWGTID----VVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQ 119

Query: 175 AVLPGMLKRKKGLSMLNIG 193
           A    M+K++KG  ++NI 
Sbjct: 120 AATKIMMKKRKG-RIINIA 137

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 59.8 bits (144), Expect = 1e-11
 Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 4/98 (4%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALVTG   GIGK+ A +L K G  + +   N    K V+  I          +V VD S 
Sbjct: 4   ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGH--AVAVKVDVSD 61

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFH 151
              +   VE+ ++ + G DV V    V  S P      
Sbjct: 62  RDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITP 99

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 59.6 bits (144), Expect = 1e-11
 Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 5/138 (3%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           ALVTG   GIG+  A  LAK+  +++ + R       V D I++     +      D S 
Sbjct: 13  ALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS--FGYESSGYAGDVSK 70

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
              E +  +   I      V I            F  +     +++++ N+     +TQ 
Sbjct: 71  --KEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQP 128

Query: 176 VLPGMLKRKKGLSMLNIG 193
           +   M+  + G  ++NI 
Sbjct: 129 ISKRMINNRYG-RIINIS 145

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 59.4 bits (143), Expect = 2e-11
 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 9/144 (6%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKYAKTQIKSVVV 111
           G  AL TG   GIG+  A +L + G ++V+  G +    ++V   ++   A+    ++  
Sbjct: 6   GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQ--GVAIQA 63

Query: 112 DFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
           D S   ++    ++      GLD   +++N G+         EV Q L   +  +N  G 
Sbjct: 64  DISKPSEVVALFDKAVSHFGGLD--FVMSNSGMEVW--CDELEVTQELFDKVFNLNTRGQ 119

Query: 170 TKVTQAVLPGMLKRKKGLSMLNIG 193
             V Q  L    +  + +   +I 
Sbjct: 120 FFVAQQGLKHCRRGGRIILTSSIA 143

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 58.5 bits (141), Expect = 3e-11
 Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 11/130 (8%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           ALV+G   G+G S    +   G  +V      ++ K ++  +         + V +D + 
Sbjct: 9   ALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADA-----ARYVHLDVTQ 63

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
                  V+    A  GL   VL+NN GI         +      + ++ VN+ G     
Sbjct: 64  PAQWKAAVDTAVTAFGGLH--VLVNNAGILNI--GTIEDYALTEWQRILDVNLTGVFLGI 119

Query: 174 QAVLPGMLKR 183
           +AV+  M + 
Sbjct: 120 RAVVKPMKEA 129

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

 Score = 58.6 bits (141), Expect = 4e-11
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 11/137 (8%)

Query: 47  KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-DKLKDVSDSIQAKYAKTQ 105
           K+L   G   ++TG + G+GKS A + A     +V+  R+  D+   V + I+    +  
Sbjct: 3   KDLE--GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGE-- 58

Query: 106 IKSVVVDFS--GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIK 163
             +V  D +   D+   V+   +    LD  V+INN G+  P +   HE+       +I 
Sbjct: 59  AIAVKGDVTVESDVINLVQSAIKEFGKLD--VMINNAGLENPVS--SHEMSLSDWNKVID 114

Query: 164 VNVEGTTKVTQAVLPGM 180
            N+ G    ++  +   
Sbjct: 115 TNLTGAFLGSREAIKYF 131

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 58.4 bits (140), Expect = 4e-11
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 17/143 (11%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIK-----SV 109
           A++TG    IG S A +L + G  +V+  R+ +   + +   + A  A + +      S+
Sbjct: 4   AVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSL 63

Query: 110 VVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYP---------YARFFHEVDQVLLKN 160
                   ++ ++    A    D  VL+NN    YP               +     +  
Sbjct: 64  SSSLLDCCEDIIDCSFRAFGRCD--VLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAE 121

Query: 161 LIKVNVEGTTKVTQAVLPGMLKR 183
           L   N      + +A      + 
Sbjct: 122 LFGSNAVAPLFLIRAFARRQGEG 144

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.8 bits (138), Expect = 6e-11
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 5/134 (3%)

Query: 56  ALVTGPTDGIGKSFA---FQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
            L+TG   G+G         L +   +L    RN ++ K++ D +   ++   I  + + 
Sbjct: 5   ILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED-LAKNHSNIHILEIDLR 63

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
                D+ V  I+   +   + VL NN GI+   AR    V    L + ++ N      +
Sbjct: 64  NFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITA-VRSQELLDTLQTNTVVPIML 122

Query: 173 TQAVLPGMLKRKKG 186
            +A LP + K  K 
Sbjct: 123 AKACLPLLKKAAKA 136

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score = 57.6 bits (138), Expect = 8e-11
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 29/152 (19%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL-KDVSDSIQAKYAKTQIKSVVVDFS 114
            +++G   GIG +    L   G  +V +     ++  D+S +   K A   I  V+   S
Sbjct: 4   IVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQA---IADVLAKCS 60

Query: 115 GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQ 174
             +D                 L+   G+              +L N++ VN  G T++  
Sbjct: 61  KGMD----------------GLVLCAGLGPQTK---------VLGNVVSVNYFGATELMD 95

Query: 175 AVLPGMLKRKKGLSMLNIGKAELMCSVRFHYM 206
           A LP + K  +  +++    A    +   + +
Sbjct: 96  AFLPALKKGHQPAAVVISSVASAHLAFDKNPL 127

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 57.4 bits (138), Expect = 9e-11
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 5/135 (3%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVV 111
           G  ALVTG   GIG+  A +L + G  +++   N  +  ++V  +I+   +        V
Sbjct: 18  GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANV 77

Query: 112 DFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTK 171
               D+    E   +    LD  ++ +N G+         +V       +  +N  G   
Sbjct: 78  GVVEDIVRMFEEAVKIFGKLD--IVCSNSGVVSFGH--VKDVTPEEFDRVFTINTRGQFF 133

Query: 172 VTQAVLPGMLKRKKG 186
           V +     +    + 
Sbjct: 134 VAREAYKHLEIGGRL 148

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 1e-10
 Identities = 28/131 (21%), Positives = 46/131 (35%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            L+TG + GIG   A +LA        V      LK      +A  A       +     
Sbjct: 5   VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQL 64

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
           D+ +            +  V +               + +  + +++ VNV GT ++ QA
Sbjct: 65  DVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQA 124

Query: 176 VLPGMLKRKKG 186
            LP M +R  G
Sbjct: 125 FLPDMKRRGSG 135

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

 Score = 56.7 bits (136), Expect = 2e-10
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            LVTG    IG + A +LA+ G  + L+  N + L+    S++ K  +   +S V D + 
Sbjct: 8   CLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVE--ARSYVCDVTS 65

Query: 115 -GDLDEGVERIKEAIEGLDV 133
              +   V+ +      +D 
Sbjct: 66  EEAVIGTVDSVVRDFGKIDF 85

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Length = 256

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 3/140 (2%)

Query: 56  ALVTGPTD--GIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF 113
           ALV G T+   +G + A +L + G  + L  +      +     +A       ++ V   
Sbjct: 11  ALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQD 70

Query: 114 SGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT 173
             +LD     +KEA  GLD  V              + +  +      ++V+      V 
Sbjct: 71  E-ELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVA 129

Query: 174 QAVLPGMLKRKKGLSMLNIG 193
           +   P + +    +++    
Sbjct: 130 RRAEPLLREGGGIVTLTYYA 149

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

 Score = 55.5 bits (133), Expect = 4e-10
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 7/102 (6%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            LVTG   GIG++     A+ G +LV V R    L +   +++A+       +VV D S 
Sbjct: 8   ILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAE-----AIAVVADVSD 62

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQ 155
              ++       E    L        V  S        E  +
Sbjct: 63  PKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWE 104

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.4 bits (130), Expect = 7e-10
 Identities = 10/121 (8%), Positives = 32/121 (26%), Gaps = 11/121 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            LV G    +G             +  +    ++    S  ++   + T+          
Sbjct: 5   VLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTE---------- 54

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
             D+    + + +    V  ++      +       +        + K ++  +T  +  
Sbjct: 55  QADQVTAEVGKLLGDQKVDAILCVA-GGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHL 113

Query: 176 V 176
            
Sbjct: 114 A 114

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

 Score = 53.9 bits (129), Expect = 1e-09
 Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 19/134 (14%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
               LV   + GIG++ A  L++ G  + +  RN + LK               + VV D
Sbjct: 4   DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGH-----------RYVVCD 52

Query: 113 FSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKV 172
              DLD   E++KE      V +L+ N     P A FF E+     K  I        K+
Sbjct: 53  LRKDLDLLFEKVKE------VDILVLN--AGGPKAGFFDELTNEDFKEAIDSLFLNMIKI 104

Query: 173 TQAVLPGMLKRKKG 186
            +  LP M ++  G
Sbjct: 105 VRNYLPAMKEKGWG 118

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 1e-09
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
           A +TG   G+GK     L+  G   V+  R  D LK  ++ I ++    ++ ++  D   
Sbjct: 28  AFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRD 86

Query: 115 -GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHE 152
              +   V  + +     ++ +         P  R    
Sbjct: 87  PDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPN 125

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.3 bits (127), Expect = 2e-09
 Identities = 12/111 (10%), Positives = 35/111 (31%), Gaps = 11/111 (9%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
            +V G    +G +      K G  ++ +  + +   D +  +              +++ 
Sbjct: 5   VIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGN----------KNWTE 54

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNV 166
                +E+   +++G  V  +       +       +        +IK +V
Sbjct: 55  QEQSILEQTASSLQGSQVDGVFCVA-GGWAGGSASSKDFVKNADLMIKQSV 104

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

 Score = 52.9 bits (126), Expect = 3e-09
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 4/100 (4%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-DKLKDVSDSIQAKYAKTQIKSVVVDFS 114
           A+VTG T GIG   A  LA  G ++VL G     +++ V   + A++   ++     D S
Sbjct: 7   AVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHG-VKVLYDGADLS 65

Query: 115 --GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHE 152
               +   V+     +  +D+ V    +  +     F  E
Sbjct: 66  KGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTE 105

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} Length = 284

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

 Score = 50.4 bits (119), Expect = 3e-08
 Identities = 29/186 (15%), Positives = 48/186 (25%), Gaps = 35/186 (18%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQI-------- 106
           ALVTG    +G+S A  L   G  + L   R+  +   +S ++ A+   + I        
Sbjct: 5   ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN 64

Query: 107 ----------KSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARF------- 149
                      S  V       E V          DV V   +     P  R        
Sbjct: 65  VATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEP 124

Query: 150 ---FHEVDQVLLKNLIKVNVEGTTKVT------QAVLPGMLKRKKGLSMLNIGKAELMCS 200
                E  +    +L   N      +        A  P   +      +  +        
Sbjct: 125 CVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL 184

Query: 201 VRFHYM 206
           + +   
Sbjct: 185 LGYTIY 190

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 49.3 bits (117), Expect = 5e-08
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 15/82 (18%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS- 114
            LVTG   GIG + A +LA  G  + +  R     K +               V VD + 
Sbjct: 10  VLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL-------------FGVEVDVTD 56

Query: 115 -GDLDEGVERIKEAIEGLDVGV 135
              +D     ++E    ++V V
Sbjct: 57  SDAVDRAFTAVEEHQGPVEVLV 78

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 9e-07
 Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 1/128 (0%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           A++TG   G+G + A +L   G + VL+       +  +  +                  
Sbjct: 8   AVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQ 67

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQA 175
                 +     ++       I     +Y   +      +   +  + VN+ GT  V + 
Sbjct: 68  TALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRV-LDVNLMGTFNVIRL 126

Query: 176 VLPGMLKR 183
           V   M + 
Sbjct: 127 VAGEMGQN 134

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 8/143 (5%)

Query: 56  ALVTGPT--DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF 113
            LVTG      I    A  + + G  L    +N DKLK   +   A+     +    V  
Sbjct: 8   ILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DKLKGRVEEFAAQLGSDIVLQCDVAE 66

Query: 114 SGDLDEGVERIKEAIEGLDVGVLINNVGISYPYA---RFFHEVDQVLLKNLIKVNVEGTT 170
              +D     + +     D    ++++G +        + + V +   K    ++     
Sbjct: 67  DASIDTMFAELGKVWPKFD--GFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFV 124

Query: 171 KVTQAVLPGMLKRKKGLSMLNIG 193
            + +A    +      L++  +G
Sbjct: 125 AMAKACRSMLNPGSALLTLSYLG 147

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 44.0 bits (103), Expect = 4e-06
 Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 32/150 (21%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK------DVSDSIQAKYAKTQIKSV 109
           ALVTG   G+G++ A  L   G  +V++    +         DV+     + A  + +  
Sbjct: 4   ALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQE- 62

Query: 110 VVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGT 169
                                L   V    VG++               + +++VN+ GT
Sbjct: 63  ------------------EAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGT 104

Query: 170 TKVTQAVLPG------MLKRKKGLSMLNIG 193
             V +             + ++G  ++N  
Sbjct: 105 FNVLRLAAWAMRENPPDAEGQRG-VIVNTA 133

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 43.1 bits (100), Expect = 5e-06
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 1/100 (1%)

Query: 56  ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG 115
           AL+ G T  +GK  A +LA  G  +V+  R  +K +  +   +       I  +  + + 
Sbjct: 4   ALLGG-TGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAA 62

Query: 116 DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQ 155
           +  +           +D    + N+            V +
Sbjct: 63  EACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSR 102

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

 Score = 43.5 bits (101), Expect = 6e-06
 Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 3/82 (3%)

Query: 56  ALVTGPTD--GIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF 113
            L+ G  +   I    A      G  L     N + L+     I  +     +  + V  
Sbjct: 8   GLIVGVANNKSIAYGIAQSCFNQGATLAFTYLN-ESLEKRVRPIAQELNSPYVYELDVSK 66

Query: 114 SGDLDEGVERIKEAIEGLDVGV 135
                     +K+ +  LD  V
Sbjct: 67  EEHFKSLYNSVKKDLGSLDFIV 88

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

 Score = 43.1 bits (100), Expect = 7e-06
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 56 ALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDSIQA 99
           LVTG T G+G   A  LA+ G  +L+LV R+        + +  
Sbjct: 12 VLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAE 56

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

 Score = 41.3 bits (95), Expect = 3e-05
 Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 56 ALVTGP--TDGIGKSFAFQLAKTGLNLVLVGRNPDKLKD 92
           LV+G      I    A    + G  LVL G +  +L  
Sbjct: 9  ILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQ 47

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

 Score = 40.9 bits (94), Expect = 4e-05
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 53  GSWALVTG--PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQI 106
           G  A + G    +G G + A  LA  G  +++    P      +   + K+ ++++
Sbjct: 8   GKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRV 63

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 16/156 (10%)

Query: 40  VNFLRPAKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQA 99
           V  +  A      G  A+V   T  +G   A  LA  G  +VL GR  DK +  +DS+  
Sbjct: 10  VALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNK 69

Query: 100 KYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK 159
           ++      +   D             EA++G     +     I          + Q   +
Sbjct: 70  RFKVNVTAAETADD--------ASRAEAVKGAH--FVFTAGAIG------LELLPQAAWQ 113

Query: 160 NLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKA 195
           N   + +         +  G +            +A
Sbjct: 114 NESSIEIVADYNAQPPLGIGGIDATDKGKEYGGKRA 149

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 329

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 56  ALVTGP--TDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVV 110
             + G   T+G G   A +L+K  + ++     P     + +    K+    I    
Sbjct: 5   CFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKD 61

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score = 37.9 bits (86), Expect = 5e-04
 Identities = 18/60 (30%), Positives = 25/60 (41%)

Query: 53  GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD 112
           GS  LVTG    +      QL + G  +    R+  KL ++     AKY      +VV D
Sbjct: 11  GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVED 70

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 17/98 (17%), Positives = 24/98 (24%), Gaps = 9/98 (9%)

Query: 57  LVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD 116
            V G T   G S     A  G ++     +                + Q    V  F G 
Sbjct: 7   AVVGATGRQGASLIRVAAAVGHHVRAQVHSLKG---------LIAEELQAIPNVTLFQGP 57

Query: 117 LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVD 154
           L   V  +    EG  +  +          A      D
Sbjct: 58  LLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLAD 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	100.0
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	100.0
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	100.0
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	100.0
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	99.98
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	99.98
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	99.98
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	99.98
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	99.98
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	99.97
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	99.97
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	99.97
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	99.97
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	99.97
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	99.97
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	99.97
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	99.97
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	99.97
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	99.97
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	99.97
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	99.97
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	99.97
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	99.97
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	99.97
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	99.97
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	99.97
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	99.97
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	99.97
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	99.97
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	99.97
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	99.97
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	99.96
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	99.96
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	99.96
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	99.96
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	99.96
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	99.96
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	99.96
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	99.96
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	99.96
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	99.96
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	99.95
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	99.95
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	99.95
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	99.95
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	99.94
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	99.94
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	99.94
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	99.94
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	99.94
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	99.94
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	99.94
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	99.92
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	99.92
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	99.9
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	99.9
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	99.89
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	99.87
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	99.87
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	99.84
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	99.8
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	99.79
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	99.78
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	99.77
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.76
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	99.76
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	99.57
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	99.51
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.5
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.46
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.45
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	99.43
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	99.43
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	99.42
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.39
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	99.36
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	99.36
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	99.34
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	99.33
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.32
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	99.27
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	99.25
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	99.22
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	99.21
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	99.18
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.13
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	99.11
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.05
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	99.0
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	98.95
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	98.92
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	98.88
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	98.85
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	98.82
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	98.76
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.6
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	98.44
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	98.42
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	98.39
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	98.37
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	98.3
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.26
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	98.24
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	98.16
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	98.12
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	98.01
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	98.01
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.99
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.98
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.96
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.95
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.94
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.88
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.82
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	97.82
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.77
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.74
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.66
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.61
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.59
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.59
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	97.58
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.58
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.57
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	97.57
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	97.57
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	97.55
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.53
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.48
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.47
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.44
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.42
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.38
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.33
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.32
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.31
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.28
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	97.27
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.26
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.23
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.22
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.21
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.15
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.13
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.13
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.11
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.11
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	97.08
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.07
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.07
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.01
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.01
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.0
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.99
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.95
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.93
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.93
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.87
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.85
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.83
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	96.77
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.75
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.68
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.65
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.57
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.51
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.45
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.45
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.41
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.39
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.25
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.23
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.16
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.06
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.03
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.94
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.89
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.89
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.83
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	95.72
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.67
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.56
d1p9oa_	290	Phosphopantothenoylcysteine synthetase {Human (Hom	95.42
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	95.37
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.35
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.23
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.22
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	94.93
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	94.83
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	94.65
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.65
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.61
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.57
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.54
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	94.54
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.53
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.49
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.43
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	94.34
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.32
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	94.32
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.32
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	94.26
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.25
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	93.88
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	93.82
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.82
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	93.74
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.63
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.57
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	93.52
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.43
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	93.42
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	93.38
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.19
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.16
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	93.11
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.07
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.99
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	92.94
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	92.89
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	92.88
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.79
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	92.75
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	92.69
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	92.68
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.59
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.54
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	92.38
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	92.34
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	92.24
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	92.19
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	91.96
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	91.95
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	91.87
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	91.87
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.76
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	91.6
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	91.52
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	91.47
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	91.46
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	91.33
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	91.3
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	91.25
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	91.23
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	91.22
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	91.19
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	91.14
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	91.13
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	91.07
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	90.99
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	90.91
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	90.84
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	90.81
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	90.71
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	90.66
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	90.66
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	90.66
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	90.6
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	90.52
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	90.52
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	90.47
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	90.3
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	90.29
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	90.26
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	90.17
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	90.16
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	89.79
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	89.71
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	89.68
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	89.65
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	89.61
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	89.36
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	89.32
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	89.22
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	88.95
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	88.79
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	88.74
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	88.27
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	88.08
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	87.74
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	87.54
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	87.53
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	87.42
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	87.41
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	87.31
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	87.26
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	87.25
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	87.0
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	86.81
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	86.44
d1ls1a2	207	GTPase domain of the signal sequence recognition p	86.27
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	85.95
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	85.85
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	85.62
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	85.27
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	85.03
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	84.93
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	84.62
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	84.59
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	84.57
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	84.56
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	84.52
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	84.02
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	83.82
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	83.77
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	83.68
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	83.46
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	83.4
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	83.4
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	83.23
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	83.2
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	83.14
d2h00a1	250	Methyltransferase 10 domain containing protein MET	83.03
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	82.86
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	82.52
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	82.5
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	82.45
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	82.4
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	82.3
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	82.24
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	81.99
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	81.84
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	81.82
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	81.78
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	81.76
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	81.71
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	81.63
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	81.54
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	81.36
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	81.26
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	81.23
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	81.22
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	81.15
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	81.15
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	81.08
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	80.61
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	80.51
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	80.16
d1okkd2	207	GTPase domain of the signal recognition particle r	80.07

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=100.00  E-value=4.8e-33  Score=217.88  Aligned_cols=151  Identities=21%  Similarity=0.289  Sum_probs=137.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++.+.+++.++..+.+|++|.  +++.++++.++
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   80 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   80 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999999998887788999999999985  36777888999


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++|  ++|||||+..+. .++++.+.|+|++++++|+.|+++++|+++|.|++++.|+ ||++||.++..+.|.+
T Consensus        81 ~G~iD--iLVnnAG~~~~~-~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~-Ii~isS~~~~~~~~~~  153 (258)
T d1iy8a_          81 FGRID--GFFNNAGIEGKQ-NPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGM-VVNTASVGGIRGIGNQ  153 (258)
T ss_dssp             HSCCS--EEEECCCCCCCC-BCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE-EEEECCGGGTSBCSSB
T ss_pred             hCCCC--EEEECCcccccC-CchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCC-CcccccHhhccCCCCc
Confidence            99755  999999987542 4688999999999999999999999999999999988888 9999999999988854

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=100.00  E-value=4.4e-32  Score=212.49  Aligned_cols=151  Identities=22%  Similarity=0.304  Sum_probs=134.0

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIK  125 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~  125 (206)
                      +++++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++++.  +.+...+.+|++++.  ++.++++.
T Consensus         3 ~f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~   80 (259)
T d2ae2a_           3 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMNTVA   80 (259)
T ss_dssp             TTCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCCceEEEeeCCCHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999874  567788999999753  56667777


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++++ ++|++|||||+...  .++.+.+.|+|++++++|+.|++.++|+++|.|++++.|+ ||++||.++..+.|++
T Consensus        81 ~~~~~-~idilvnnAG~~~~--~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~-Ii~isS~~~~~~~~~~  155 (259)
T d2ae2a_          81 NHFHG-KLNILVNNAGIVIY--KEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGN-VVFISSVSGALAVPYE  155 (259)
T ss_dssp             HHTTT-CCCEEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEE-EEEECCGGGTSCCTTC
T ss_pred             HHhCC-CceEEEECCceecc--CccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccc-cccccccccccccccc
Confidence            77764 35699999998765  4589999999999999999999999999999999988887 9999999999988854

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-32  Score=211.70  Aligned_cols=147  Identities=28%  Similarity=0.419  Sum_probs=132.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++.||+++||||++|||+++|++|+++|++|++++|+.++++++.++++..  +.++..+.||++|.  +++.++.+.++
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNREDIYSSAKKVKAE   81 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            466999999999999999999999999999999999999999999999874  56788999999985  36777888888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +++  +|++|||||+....  ++.+.+.|+|++++++|+.|+++++++++|.|++++.|+ ||++||.++..+.|+
T Consensus        82 ~g~--idilinnag~~~~~--~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~-Iv~isS~~~~~~~~~  152 (244)
T d1yb1a_          82 IGD--VSILVNNAGVVYTS--DLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGH-IVTVASAAGHVSVPF  152 (244)
T ss_dssp             TCC--CSEEEECCCCCCCC--CCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEE-EEEECCCC-CCCHHH
T ss_pred             cCC--CceeEeeccccccc--cccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCce-EEEeecchhcCCCCC
Confidence            886  55999999998764  478899999999999999999999999999999998888 999999999998874

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.5e-32  Score=213.05  Aligned_cols=152  Identities=21%  Similarity=0.220  Sum_probs=122.8

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      ++++++||+++||||++|||+++|++|+++|++|++++|++++++++.+++.+.  +.++..+.+|++++  +++.++++
T Consensus         2 ~~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d1xq1a_           2 QRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK--GFQVTGSVCDASLRPEREKLMQTV   79 (259)
T ss_dssp             CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCceEEEeccCCCHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999874  55788999999975  36677788


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+++++ ++|++|||||+...  .++.+.+.|+|++++++|+.|++.++|+++|+|++++.|+ ||++||..+..+.|.+
T Consensus        80 ~~~~~g-~idilvnnAG~~~~--~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~-Iv~isS~~~~~~~~~~  155 (259)
T d1xq1a_          80 SSMFGG-KLDILINNLGAIRS--KPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGN-IIFMSSIAGVVSASVG  155 (259)
T ss_dssp             HHHHTT-CCSEEEEECCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCE-EEEEC----------C
T ss_pred             HHHhCC-CcccccccccccCC--CchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccc-cccccccccccccccc
Confidence            888854 36699999999865  4589999999999999999999999999999999988888 9999999999888754

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.98  E-value=9.5e-32  Score=209.64  Aligned_cols=149  Identities=25%  Similarity=0.349  Sum_probs=131.0

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++.+.+ +.++..+.+|++++  +++.++++.+
T Consensus         1 f~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999988887654 56688899999975  3677888889


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc-ccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM-CSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~-~~~~~  203 (206)
                      +++++|  ++|||||+...  +++++.+.|+|++.+++|+.|+++++|+++|+|++++.|+ ||+++|..+. .+.|.
T Consensus        80 ~~g~iD--iLVnnAG~~~~--~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~-Ii~i~S~~~~~~~~~~  152 (251)
T d1vl8a_          80 KFGKLD--TVVNAAGINRR--HPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPS-IINIGSLTVEEVTMPN  152 (251)
T ss_dssp             HHSCCC--EEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCE-EEEECCGGGTCCCSSS
T ss_pred             HcCCCC--EEEECCCCCCC--CChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccccc-ccccccchhccccCcc
Confidence            999755  99999998765  4599999999999999999999999999999999888888 9999997664 45554

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=99.98  E-value=4.4e-32  Score=211.60  Aligned_cols=148  Identities=24%  Similarity=0.326  Sum_probs=132.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++..   +.++..+.+|++|+  +++.++++.++
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999988888753   45788899999985  36788899999


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++|  ++|||||+...  +++.+.+.|+|++++++|+.|+++++|+++|+|++++.|++||++||.++..+.|.+
T Consensus        80 ~G~iD--iLVnnAg~~~~--~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~~~~  152 (251)
T d1zk4a1          80 FGPVS--TLVNNAGIAVN--KSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSL  152 (251)
T ss_dssp             HSSCC--EEEECCCCCCC--CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTTC
T ss_pred             hCCce--EEEeccccccc--cchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccCCCc
Confidence            99755  99999999866  459999999999999999999999999999999988877559999999999988854

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=7.2e-32  Score=210.79  Aligned_cols=151  Identities=27%  Similarity=0.346  Sum_probs=134.9

Q ss_pred             CcccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHH
Q 028656           46 AKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVER  123 (206)
Q Consensus        46 ~~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~  123 (206)
                      ..+++++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++++.  +.++..+.+|++++  +++.+++
T Consensus         4 ~d~m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~--g~~~~~~~~Dvs~~~~~~~~~~~   81 (255)
T d1fmca_           4 SDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADF   81 (255)
T ss_dssp             GGGGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc--CCcEEEEEccCCCHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999999875  45778899999985  3677788


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +.++++++|  ++|||||+..+  .++ +.+.|+|++++++|+.|+++++|+++|+|++++.|+ ||++||.++..+.|+
T Consensus        82 ~~~~~g~iD--ilvnnAG~~~~--~~~-e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~-Ii~isS~~~~~~~~~  155 (255)
T d1fmca_          82 AISKLGKVD--ILVNNAGGGGP--KPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGV-ILTITSMAAENKNIN  155 (255)
T ss_dssp             HHHHHSSCC--EEEECCCCCCC--CCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTCCCTT
T ss_pred             HHHHcCCCC--EeeeCCcCCCC--Ccc-cCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccc-cccccccchhccccc
Confidence            889998655  99999998765  335 789999999999999999999999999999988777 999999999998885


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      +
T Consensus       156 ~  156 (255)
T d1fmca_         156 M  156 (255)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=99.98  E-value=7.1e-32  Score=211.42  Aligned_cols=149  Identities=23%  Similarity=0.326  Sum_probs=133.8

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|++++++++.+++++.  +.++..+.+|++++  +++.++.+.++
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK--GVEARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999999999999999874  55788899999975  36778888889


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++|  ++|||||+..+. .++++.+.|+|++++++|+.++++++|+++|+|++++.|+ ||++||.++..+.|.+
T Consensus        80 ~g~iD--ilVnnaG~~~~~-~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~-II~isS~~~~~~~~~~  152 (260)
T d1zema1          80 FGKID--FLFNNAGYQGAF-APVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGR-IVNTASMAGVKGPPNM  152 (260)
T ss_dssp             HSCCC--EEEECCCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCHHHHSCCTTB
T ss_pred             hCCCC--eehhhhcccccc-CccccccHHHHHhhccccccccccchhhHHhhhhhhcCCC-CCeeechhhccCCcch
Confidence            98755  999999987542 4699999999999999999999999999999999988887 9999999999998854

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=5.3e-32  Score=210.13  Aligned_cols=145  Identities=23%  Similarity=0.411  Sum_probs=129.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|++++++++.+++.     .+...+.+|++++  +++.++++.++
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~   75 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAE   75 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcc
Confidence            3679999999999999999999999999999999999999999888773     3567889999975  36777888888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++|  ++|||||....  +++.+.+.|+|++.+++|+.|++.++|+++|+|++++.|+ ||++||.++..+.|++
T Consensus        76 ~g~iD--ilVnnAg~~~~--~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~-II~isS~~~~~~~~~~  147 (243)
T d1q7ba_          76 FGEVD--ILVNNAGITRD--NLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGR-IITIGSVVGTMGNGGQ  147 (243)
T ss_dssp             TCSCS--EEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCHHHHHCCTTC
T ss_pred             cCCcc--eehhhhhhccc--cccccccccccccccceeechhhhhHHHHHHHHHHcCCCE-eeeecchhhcCCCCCC
Confidence            88654  99999998766  4599999999999999999999999999999999988777 9999999999988854

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=1.3e-31  Score=207.82  Aligned_cols=145  Identities=23%  Similarity=0.306  Sum_probs=129.9

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|++++++++.+++.     .+...+.+|++++  +++.++++.++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAVTA   77 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh-----CcceEEEeecCCHHHHHHHHHHHHHH
Confidence            5779999999999999999999999999999999999999988887763     3577889999985  36778888888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++|  ++|||||+...  +++++.+.|+|++++++|+.|++.++|+++|.|++++.|+ ||++||.++..+.|..
T Consensus        78 ~g~id--ilinnAG~~~~--~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~-Ii~isS~~~~~~~~~~  149 (244)
T d1nffa_          78 FGGLH--VLVNNAGILNI--GTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGS-IINISSIEGLAGTVAC  149 (244)
T ss_dssp             HSCCC--EEEECCCCCCC--BCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCTTB
T ss_pred             hCCCe--EEEECCcccCC--CchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcce-EEeccccccccccccc
Confidence            88655  99999998765  4599999999999999999999999999999999988887 9999999999988854

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=99.97  E-value=3.4e-31  Score=207.58  Aligned_cols=149  Identities=21%  Similarity=0.274  Sum_probs=132.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh-hhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-DKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+. +.++++.+++++.  +.++..+.+|++++  +++.++++.+
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~--g~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVESDVINLVQSAIK   81 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            47799999999999999999999999999999999985 4678888888774  56788999999975  3677788888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++++|  ++|||||+..+  .++.+.+.|+|++++++|+.|+++++|+++|+|++++.+++||++||.++..+.|.+
T Consensus        82 ~~G~iD--iLVnnAG~~~~--~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~~~~  155 (261)
T d1geea_          82 EFGKLD--VMINNAGLENP--VSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLF  155 (261)
T ss_dssp             HHSCCC--EEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTC
T ss_pred             HhCCCC--EeeccceecCC--cchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccCccc
Confidence            888655  99999999876  458999999999999999999999999999999988877779999999999988854

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=99.97  E-value=1.2e-31  Score=210.19  Aligned_cols=148  Identities=26%  Similarity=0.349  Sum_probs=131.5

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC-hhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      ++||+++||||++|||+++|++|+++|++|++++|+ .+.++++.+++.+.+ +.++..+.+|+++.  +++.++++.++
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999997 467888888876653 56788999999985  36777888899


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++|  ++|||||+...  .++++.+.|+|++++++|+.|+++++|+++|+|++++.|+ ||++||.++..+.|.+
T Consensus        81 ~G~iD--iLVnnAG~~~~--~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~-Iv~isS~~~~~~~~~~  152 (260)
T d1x1ta1          81 MGRID--ILVNNAGIQHT--ALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGR-IINIASAHGLVASANK  152 (260)
T ss_dssp             HSCCS--EEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCTTC
T ss_pred             hCCCc--EEEeecccccC--CchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCce-EeecccccceeccCCc
Confidence            98655  99999999865  4599999999999999999999999999999999988787 9999999999998854

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.97  E-value=1.4e-31  Score=208.73  Aligned_cols=149  Identities=23%  Similarity=0.319  Sum_probs=133.7

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +.++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++++.  +.++..+.+|++++  +++.++++.+
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~--g~~~~~~~~Dvt~~~~v~~~~~~~~~   83 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVSKKEEISEVINKILT   83 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            5578999999999999999999999999999999999999999999999774  45788999999985  3677788888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++++|  ++|||||....  .++.+.+.|+|++++++|+.|+++++|+++|+|++++.|+ ||++||.++..+.|..
T Consensus        84 ~~g~iD--ilvnnag~~~~--~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~-IVnisS~~~~~~~~~~  156 (251)
T d2c07a1          84 EHKNVD--ILVNNAGITRD--NLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGR-IINISSIVGLTGNVGQ  156 (251)
T ss_dssp             HCSCCC--EEEECCCCCCC--CCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEE-EEEECCTHHHHCCTTC
T ss_pred             hcCCce--eeeeccccccc--cccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeE-EEEECCHHhcCCCCCC
Confidence            888655  99999998765  4488999999999999999999999999999999988787 9999999999888854

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.97  E-value=2.4e-31  Score=208.01  Aligned_cols=147  Identities=22%  Similarity=0.342  Sum_probs=129.4

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++     +.++..+.+|++++  +++.++++.+
T Consensus         1 M~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~-----~~~~~~~~~Dvt~~~~v~~~~~~~~~   75 (256)
T d1k2wa_           1 MRLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI-----GPAACAIALDVTDQASIDRCVAELLD   75 (256)
T ss_dssp             CTTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCceEEEEeeCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999999998888776     44678899999985  3677788888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++++|  ++|||||+...  +++.+.+.|+|++.+++|+.|+++++|+++|.|++++++++||++||.++..+.|.+
T Consensus        76 ~~g~iD--ilVnnAg~~~~--~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~  149 (256)
T d1k2wa_          76 RWGSID--ILVNNAALFDL--APIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEALV  149 (256)
T ss_dssp             HHSCCC--EEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTC
T ss_pred             HhCCcc--EEEeecccccc--cccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhccccccc
Confidence            898655  99999998765  458999999999999999999999999999988777654459999999999998854

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=99.97  E-value=1.9e-31  Score=208.06  Aligned_cols=145  Identities=21%  Similarity=0.298  Sum_probs=129.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++     +.++..+.+|++++  +++.++++.++
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCceEEEEcccCCHHHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999999888877665     35678899999975  36777888888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++|  ++|||||+...  .++.+.+.|+|++.+++|+.|+++++|+++|+|++++.|+ ||++||.++..+.|.+
T Consensus        77 ~g~iD--ilVnnAg~~~~--~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~-II~isS~~~~~~~~~~  148 (254)
T d1hdca_          77 FGSVD--GLVNNAGISTG--MFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGS-IVNISSAAGLMGLALT  148 (254)
T ss_dssp             HSCCC--EEEECCCCCCC--SCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCTTC
T ss_pred             cCCcc--EEEecCccccc--cccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCe-ecccccchhcccccch
Confidence            98655  99999999865  4599999999999999999999999999999999888777 9999999999988854

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.97  E-value=4.6e-31  Score=206.26  Aligned_cols=145  Identities=26%  Similarity=0.364  Sum_probs=130.0

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhcCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIEGL  131 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~  131 (206)
                      |+++||||++|||+++|++|+++|++|++++|++++++++.+++++.  +.++..+.+|++++  +++.++.+.++++++
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   79 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA--GGHAVAVKVDVSDRDQVFAAVEQARKTLGGF   79 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence            78899999999999999999999999999999999999999999875  55788899999985  367778888888865


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      |  ++|||||+...  +++.+.+.|+|++++++|+.|+++++|+++|+|++++.+++||++||.++..+.|.+
T Consensus        80 D--ilVnnAG~~~~--~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~  148 (255)
T d1gega_          80 D--VIVNNAGVAPS--TPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPEL  148 (255)
T ss_dssp             C--EEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTB
T ss_pred             c--EEEeccccccc--CcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccCccc
Confidence            5  99999998765  569999999999999999999999999999998888766669999999999888854

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=99.97  E-value=5e-31  Score=205.09  Aligned_cols=146  Identities=22%  Similarity=0.326  Sum_probs=126.2

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.++.  ..+.+++  .+.++..+.+|++|.  +++.++++.++
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~--~~~~~~~--~g~~~~~~~~Dvs~~~~v~~~~~~~~~~   77 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPE--AEAAIRN--LGRRVLTVKCDVSQPGDVEAFGKQVIST   77 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHH--HHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH--HHHHHHH--cCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            46799999999999999999999999999999999987532  2333444  356788999999985  36777888899


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++|  ++|||||+...  .++++.+.|+|++++++|+.|+++++|+++|.|++++.|+ ||++||.++..+.|.+
T Consensus        78 ~G~iD--ilVnnAG~~~~--~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~-Iv~isS~~~~~~~~~~  149 (247)
T d2ew8a1          78 FGRCD--ILVNNAGIYPL--IPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGR-IINLTSTTYWLKIEAY  149 (247)
T ss_dssp             HSCCC--EEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGGSCCSSC
T ss_pred             cCCCC--EEEECCCCCCC--CChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCC-ccccccchhcccCccc
Confidence            98755  99999999765  4599999999999999999999999999999999988787 9999999999998854

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-30  Score=203.97  Aligned_cols=147  Identities=23%  Similarity=0.315  Sum_probs=132.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      ++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++++.+.+.++..+.||++++  +++.++.+.+++
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            789999999999999999999999999999999999999999999999987778999999999985  367888899999


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC--CCceEEEecccccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK--KGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~~iv~isS~~~~~~~~  202 (206)
                      +++|  ++|||||...+  +++.+.++++|++.+++|+.|+++++++++|.|++++  .|+ ||++||.++....|
T Consensus        88 g~iD--~lVnnAg~~~~--~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~-Ii~isS~~~~~~~p  158 (257)
T d1xg5a_          88 SGVD--ICINNAGLARP--DTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGH-IININSMSGHRVLP  158 (257)
T ss_dssp             CCCS--EEEECCCCCCC--CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCE-EEEECCGGGTSCCS
T ss_pred             CCCC--EEEecccccCC--CccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCc-eEEEechHhcCCCC
Confidence            8755  99999998865  4599999999999999999999999999999998765  455 99999999876654

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.97  E-value=5e-31  Score=204.22  Aligned_cols=144  Identities=24%  Similarity=0.345  Sum_probs=130.0

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCc-------EEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLN-------LVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERI  124 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~-------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~  124 (206)
                      ++++||||++|||+++|++|+++|++       |++.+|+.++++++.+++++.  +.++..+.+|++|.  +++.++++
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dvt~~~~v~~~~~~~   79 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTHI   79 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHH
Confidence            46899999999999999999999998       999999999999999999874  56788999999985  36777888


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .++++++|  ++|||||+...  .++.+.+.|+|++++++|+.|+++++|+++|+|++++.|+ ||++||.++..+.|++
T Consensus        80 ~~~~g~iD--ilvnnAg~~~~--~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~-Ii~isS~~~~~~~~~~  154 (240)
T d2bd0a1          80 VERYGHID--CLVNNAGVGRF--GALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGH-IFFITSVAATKAFRHS  154 (240)
T ss_dssp             HHHTSCCS--EEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCTTC
T ss_pred             HHHcCCcc--eeecccccccC--CccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCc-eEEEechhhcCCCCCC
Confidence            89998655  99999999865  4599999999999999999999999999999999988887 9999999999998864

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=99.97  E-value=5.6e-31  Score=207.16  Aligned_cols=148  Identities=22%  Similarity=0.261  Sum_probs=130.9

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++..   ...+.++.+|++++  +++.++++.++
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999888854   34577889999975  46777888889


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      ++++|  ++|||||+....+.++.+.+.|+|++++++|+.|++.++|+++|+|++++.|+ ||++||.++..+.+.
T Consensus        80 ~g~iD--~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~-ii~iss~~~~~~~~~  152 (268)
T d2bgka1          80 HGKLD--IMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGS-IVFTASISSFTAGEG  152 (268)
T ss_dssp             HSCCC--EEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEE-EEEECCGGGTCCCTT
T ss_pred             cCCcc--eeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCC-ccccccccccccccc
Confidence            98655  99999998776555588999999999999999999999999999999888887 999999998887664

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.97  E-value=5.9e-31  Score=205.85  Aligned_cols=146  Identities=27%  Similarity=0.365  Sum_probs=130.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~  129 (206)
                      .||+++||||++|||+++|++|+++|++|++++|+.++++++.+++++.  +.++..+.+|+++.  +++.++++.++++
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~--g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA--GVEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            4899999999999999999999999999999999999999999999874  56788999999985  3677788888888


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhh--hHhCCCCceEEEeccccccccccCC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPG--MLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~--~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++|  ++|||||+...  +++.+.+.|+|++++++|+.|+++++|+++|+  |.+++.|+ ||++||..+..+.|..
T Consensus        79 ~iD--ilVnnAG~~~~--~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~-Ii~i~S~~~~~~~~~~  150 (257)
T d2rhca1          79 PVD--VLVNNAGRPGG--GATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGR-IVNIASTGGKQGVVHA  150 (257)
T ss_dssp             SCS--EEEECCCCCCC--SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEE-EEEECCGGGTSCCTTC
T ss_pred             CCC--EEEecccccCC--CChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcc-cccccccccccccccc
Confidence            655  99999998765  45999999999999999999999999999997  45666666 9999999999998854

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.97  E-value=6.7e-31  Score=205.02  Aligned_cols=144  Identities=22%  Similarity=0.253  Sum_probs=127.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|++++++++.+++     +.+...+.+|+++.  .++.++.+.++
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~~   77 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCCeEEEEeecCCHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999888776     34567889999974  36777888889


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++|  ++|||||+..+  .++.+.+.|+|++++++|+.|++.++|+++|+|+++ .|+ ||++||.++..+.|..
T Consensus        78 ~g~iD--ilVnnAG~~~~--~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~G~-Iv~isS~~~~~~~~~~  148 (253)
T d1hxha_          78 LGTLN--VLVNNAGILLP--GDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET-GGS-IINMASVSSWLPIEQY  148 (253)
T ss_dssp             HCSCC--EEEECCCCCCC--BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT-CEE-EEEECCGGGTSCCTTB
T ss_pred             hCCCC--eEEecccccCC--CCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CCc-eecccchhhhcCcccc
Confidence            98755  99999999866  458999999999999999999999999999999654 365 9999999999988854

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=2.7e-30  Score=203.84  Aligned_cols=152  Identities=23%  Similarity=0.306  Sum_probs=133.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcC-CceEEEEEEecCCC--chHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYA-KTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+.+. ..++..+.+|+++.  +++.++++.+
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence            46799999999999999999999999999999999999999999999987643 45789999999985  3677888899


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++++|  ++|||||.......++.+.+.|+|++.+++|+.|++.++|+++|+|++++.+. |+++||.++..+.|++
T Consensus        81 ~~G~iD--ilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~-ii~~ss~~~~~~~~~~  155 (274)
T d1xhla_          81 KFGKID--ILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEI-VNVSSIVAGPQAHSGY  155 (274)
T ss_dssp             HHSCCC--EEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEE-EEECCGGGSSSCCTTS
T ss_pred             HcCCce--EEEeecccccccccccccCCHHHHHHHHhhccccccccccccccccccccccc-ccchhhhhccccCCCC
Confidence            998655  99999998765545567789999999999999999999999999999887676 9999998888887754

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=2e-30  Score=201.70  Aligned_cols=142  Identities=24%  Similarity=0.298  Sum_probs=122.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      .++||+++||||++|||+++|++|+++|++|++++|+++..+ ..+++     +.  ..+++|+++.  +++.++++.++
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~-~~~~~-----~~--~~~~~Dv~~~~~v~~~~~~~~~~   73 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE-VAEAI-----GG--AFFQVDLEDERERVRFVEEAAYA   73 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH-HHHHH-----TC--EEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHc-----CC--eEEEEeCCCHHHHHHHHHHHHHh
Confidence            367999999999999999999999999999999999986543 33332     22  4578999975  36778889999


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++|  ++|||||+..+  +++++.+.|+|++++++|+.|+++++|+++|+|++++.|+ ||++||.++..+.|.+
T Consensus        74 ~G~iD--iLVnnAG~~~~--~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~-Ii~isS~~~~~~~~~~  145 (248)
T d2d1ya1          74 LGRVD--VLVNNAAIAAP--GSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGA-IVNVASVQGLFAEQEN  145 (248)
T ss_dssp             HSCCC--EEEECCCCCCC--BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEE-EEEECCGGGTSBCTTB
T ss_pred             cCCCC--eEEEeCcCCCC--CChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccc-cccccccccccccccc
Confidence            99755  99999999866  4599999999999999999999999999999999888777 9999999999998854

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-30  Score=202.48  Aligned_cols=144  Identities=21%  Similarity=0.301  Sum_probs=124.7

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|++++++++.+++    +  ....+.+|++|.  +++.++++.++
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~----~--~~~~~~~Dvs~~~~v~~~~~~~~~~   76 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL----P--GAVFILCDVTQEDDVKTLVSETIRR   76 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----T--TEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc----C--CCeEEEccCCCHHHHHHHHHHHHHh
Confidence            467999999999999999999999999999999999998888776654    2  357788999975  36777888888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++|  ++|||||+... ..++++.+.|+|++++++|+.|++.++|+++|.|+++ +|+ ||++||.++..+.|.+
T Consensus        77 ~g~iD--ilVnnAG~~~~-~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~-~G~-Ii~isS~~~~~~~~~~  148 (250)
T d1ydea1          77 FGRLD--CVVNNAGHHPP-PQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS-QGN-VINISSLVGAIGQAQA  148 (250)
T ss_dssp             HSCCC--EEEECCCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCE-EEEECCHHHHHCCTTC
T ss_pred             cCCCC--EEEeccccccc-ccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC-CCC-CcccccccccccccCc
Confidence            98755  99999997643 2458899999999999999999999999999999765 476 9999999999888854

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=99.97  E-value=5.5e-30  Score=200.33  Aligned_cols=150  Identities=19%  Similarity=0.299  Sum_probs=133.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++++||+++||||++|||+++|++|+++|++|++++|++++++++.+++++.  +..++.+.+|+++.  +++.++++.+
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~--~~~~~~~~~D~s~~~~~~~~~~~~~~   79 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVCDLLSRTERDKLMQTVAH   79 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCCceEEEeecCCHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999999999999999999999874  56677889999975  3566677888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++ .+|++|||||....  .++++.+.++|++++++|+.+++.++++++|.|.+++.|+ ||++||..+..+.|+.
T Consensus        80 ~~~g-~idilinnag~~~~--~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~-ii~isS~~~~~~~~~~  153 (258)
T d1ae1a_          80 VFDG-KLNILVNNAGVVIH--KEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGN-VIFLSSIAGFSALPSV  153 (258)
T ss_dssp             HTTS-CCCEEEECCCCCCC--CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEE-EEEECCGGGTSCCTTC
T ss_pred             HhCC-CcEEEecccccccc--CccccCCHHHHhhhhhhccccccccccccccccccccccc-cccccccccccccccc
Confidence            8754 46699999999876  4599999999999999999999999999999999998887 9999999999988854

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.97  E-value=2.7e-30  Score=200.56  Aligned_cols=144  Identities=26%  Similarity=0.364  Sum_probs=127.6

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEE-cChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhcC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIEG  130 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~  130 (206)
                      ++++||||++|||+++|++|+++|++|++.+ |+.+.++++.+++++.  +.++..+.+|++|.  +++.++++.+++++
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            5899999999999999999999999999875 5677888888888775  56788999999985  36777888888886


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +|  ++|||||....  +++.+.+.|+|++++++|+.|+++++|+++|+|++++.|+ ||++||.++..+.|+.
T Consensus        80 iD--iLVnnAg~~~~--~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~-IVnisS~~~~~~~~~~  148 (244)
T d1edoa_          80 ID--VVVNNAGITRD--TLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGR-IINIASVVGLIGNIGQ  148 (244)
T ss_dssp             CS--EEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCTHHHHCCTTC
T ss_pred             CC--ccccccccccc--cchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcE-EEEEcChhhcCCCCCC
Confidence            55  99999998866  4599999999999999999999999999999999988787 9999999999988854

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.4e-30  Score=200.65  Aligned_cols=144  Identities=26%  Similarity=0.323  Sum_probs=124.1

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      ++++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.      .+..+.+|+++.  +.++++.+++
T Consensus         1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~------~~~~~~~Dv~~~--~~v~~~~~~~   72 (242)
T d1cyda_           1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP------GIEPVCVDLGDW--DATEKALGGI   72 (242)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST------TCEEEECCTTCH--HHHHHHHTTC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC------CCeEEEEeCCCH--HHHHHHHHHc
Confidence            35789999999999999999999999999999999999988887776542      245678999986  6677777888


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++  +|++|||||+...  +++.+.+.++|++.+++|+.|+++++|+++|.|++++.+++||++||.++..+.|..
T Consensus        73 g~--iDilVnnAg~~~~--~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~  144 (242)
T d1cyda_          73 GP--VDLLVNNAALVIM--QPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNL  144 (242)
T ss_dssp             CC--CSEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTB
T ss_pred             CC--CeEEEECCccccc--hhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccCCcc
Confidence            75  5599999998765  569999999999999999999999999999988776554459999999999988854

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.4e-30  Score=200.04  Aligned_cols=145  Identities=28%  Similarity=0.364  Sum_probs=125.0

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      ++.++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.      .+..+.+|++|.  +.++++.++
T Consensus         2 ~~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~------~~~~~~~Dv~d~--~~v~~~~~~   73 (244)
T d1pr9a_           2 ELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP------GIEPVCVDLGDW--EATERALGS   73 (244)
T ss_dssp             CCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST------TCEEEECCTTCH--HHHHHHHTT
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC------CCeEEEEeCCCH--HHHHHHHHH
Confidence            356889999999999999999999999999999999999999888776652      246678999987  667788888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++  +|++|||||+...  +++.+.+.|+|++.+++|+.+++.++|+++|.|++++.+++||++||.++..+.|.+
T Consensus        74 ~g~--iDilVnnAg~~~~--~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~  146 (244)
T d1pr9a_          74 VGP--VDLLVNNAAVALL--QPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNH  146 (244)
T ss_dssp             CCC--CCEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTB
T ss_pred             hCC--ceEEEeccccccc--cchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccccch
Confidence            875  5599999999765  459999999999999999999999999999987765444449999999999988864

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=4.6e-30  Score=204.93  Aligned_cols=147  Identities=23%  Similarity=0.327  Sum_probs=124.9

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC---------hhhHHHHHHHHHHhcCCceEEEEEEecCC--C
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN---------PDKLKDVSDSIQAKYAKTQIKSVVVDFSG--D  116 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~---------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~  116 (206)
                      +++++||+++||||++|||+++|++|+++|++|++.+|+         .+.++++.+++...+     ....+|+.+  +
T Consensus         2 Pm~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~   76 (302)
T d1gz6a_           2 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG-----GKAVANYDSVEA   76 (302)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT-----CEEEEECCCGGG
T ss_pred             CcCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcc-----cccccccchHHH
Confidence            577889999999999999999999999999999999765         345666666665532     234566665  3


Q ss_pred             chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccc
Q 028656          117 LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE  196 (206)
Q Consensus       117 ~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~  196 (206)
                      .++.++.+.++++++|  ++|||||+..+  +++.+.+.|+|++++++|+.|++.++|+++|+|++++.|+ ||++||.+
T Consensus        77 ~~~~v~~~~~~~G~iD--iLVnNAGi~~~--~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~-IV~isS~~  151 (302)
T d1gz6a_          77 GEKLVKTALDTFGRID--VVVNNAGILRD--RSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGR-IIMTASAS  151 (302)
T ss_dssp             HHHHHHHHHHHTSCCC--EEEECCCCCCC--CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEE-EEEECCHH
T ss_pred             HHHHHHHHHHHcCCCC--EEEECCccCCC--CChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcE-EEEeCChh
Confidence            4677888899998755  99999999876  4599999999999999999999999999999999988887 99999999


Q ss_pred             ccccccCC
Q 028656          197 LMCSVRFH  204 (206)
Q Consensus       197 ~~~~~~~~  204 (206)
                      +..+.|++
T Consensus       152 ~~~~~~~~  159 (302)
T d1gz6a_         152 GIYGNFGQ  159 (302)
T ss_dssp             HHHCCTTC
T ss_pred             hcCCCCCc
Confidence            99988865

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=8e-30  Score=200.12  Aligned_cols=151  Identities=24%  Similarity=0.376  Sum_probs=121.2

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhc-CCceEEEEEEecCCC--chHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKY-AKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++++.+ .+.++..+.+|+++.  +++.++.+.+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999998764 345789999999975  3677788888


Q ss_pred             HhcCCCccEEEEeccccCCc--ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccc-cccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPY--ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKA-ELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~-~~~~~~~~  203 (206)
                      +++++|  ++|||||+..+.  ..++.+.+.|+|++.+++|+.|++.++|+++|+|++++ |+ +|+++|. ++..+.|.
T Consensus        82 ~~g~iD--ilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g~-iI~~~S~~~~~~~~~~  157 (264)
T d1spxa_          82 KFGKLD--ILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GE-IVNISSIASGLHATPD  157 (264)
T ss_dssp             HHSCCC--EEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CE-EEEECCTTSSSSCCTT
T ss_pred             HhCCCC--EeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCcccccc-Cc-ceeeeeeccccccCCC
Confidence            998755  999999987532  23467789999999999999999999999999997664 55 6666554 46777774


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      +
T Consensus       158 ~  158 (264)
T d1spxa_         158 F  158 (264)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.3e-29  Score=198.34  Aligned_cols=155  Identities=19%  Similarity=0.249  Sum_probs=130.7

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHH---CCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAK---TGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERI  124 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~  124 (206)
                      .++||+++||||++|||+++|++|++   +|++|++++|+.++++++.+++...+++.++..+.||+++..  ++.++.+
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~   82 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence            36799999999999999999999996   799999999999999999999998888889999999999862  3444444


Q ss_pred             HHHh--cCCCccEEEEeccccCC-cccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC-CceEEEecccccccc
Q 028656          125 KEAI--EGLDVGVLINNVGISYP-YARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK-GLSMLNIGKAELMCS  200 (206)
Q Consensus       125 ~~~~--~~~~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~~iv~isS~~~~~~  200 (206)
                      .+..  ...++|++|||||...+ ...++++.+.++|++++++|+.|+++++|+++|+|++++. +.+||++||.++..+
T Consensus        83 ~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~~  162 (259)
T d1oaaa_          83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQP  162 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSC
T ss_pred             HHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccCC
Confidence            4432  12368899999998753 2346889999999999999999999999999999987652 234999999999999


Q ss_pred             ccCC
Q 028656          201 VRFH  204 (206)
Q Consensus       201 ~~~~  204 (206)
                      .|++
T Consensus       163 ~~~~  166 (259)
T d1oaaa_         163 YKGW  166 (259)
T ss_dssp             CTTC
T ss_pred             Cccc
Confidence            8854

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.1e-29  Score=196.86  Aligned_cols=143  Identities=20%  Similarity=0.316  Sum_probs=121.4

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++++||+++||||++|||+++|++|+++|++|++++|+++++++..+++       ....+.+|+++.  +++.++++.+
T Consensus         1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~   73 (242)
T d1ulsa_           1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALA   73 (242)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCeEEEEecCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999998888776654       245678999975  3677888899


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++++|  ++|||||+..+  +++.+.+.|+|++.+++|+.|+++++|+++|.|++++.+. ++++|| .+..+.|++
T Consensus        74 ~~g~iD--ilVnnAG~~~~--~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~-i~~~ss-~~~~~~~~~  145 (242)
T d1ulsa_          74 HLGRLD--GVVHYAGITRD--NFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGS-IVLTAS-RVYLGNLGQ  145 (242)
T ss_dssp             HHSSCC--EEEECCCCCCC--CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEE-EEEECC-GGGGCCTTC
T ss_pred             hcCCce--EEEECCccccc--CchhhCcchhhhccccccchhhhhhhhhccccccccccce-eeeecc-ccccCCCCC
Confidence            998655  99999999865  4599999999999999999999999999999998777665 777777 455666643

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=1.7e-29  Score=199.05  Aligned_cols=152  Identities=23%  Similarity=0.338  Sum_probs=127.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhc-CCceEEEEEEecCCC--chHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKY-AKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++++.+ .+.++..+.+|+++.  +++.++.+.+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            3679999999999999999999999999999999999999999999998754 346799999999985  3677888889


Q ss_pred             HhcCCCccEEEEeccccCCcc--cccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYA--RFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +++++|  ++|||||+..+.+  ....+.+.++|++++++|+.|++.++|+++|+|++++ |+.|+++||.++..+.|++
T Consensus        82 ~~g~iD--ilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g~iI~~~Ss~a~~~~~~~~  158 (272)
T d1xkqa_          82 QFGKID--VLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQAQPDF  158 (272)
T ss_dssp             HHSCCC--EEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSCCCSS
T ss_pred             HhCCce--EEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccC-CccccccchhccccCCCCc
Confidence            998755  9999999976532  2245678889999999999999999999999998764 5525555556778887754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=99.96  E-value=1.4e-29  Score=198.32  Aligned_cols=150  Identities=20%  Similarity=0.266  Sum_probs=129.5

Q ss_pred             CcccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHH
Q 028656           46 AKNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVER  123 (206)
Q Consensus        46 ~~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~  123 (206)
                      .-+++++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++.+.+ +.++..+.+|++++  +++.+++
T Consensus         2 ~~~m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~   80 (260)
T d1h5qa_           2 GFTISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQ   80 (260)
T ss_dssp             CEEECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCcccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHH
Confidence            34677899999999999999999999999999999999999999999888886653 55688999999985  3677788


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                      +.+++++  +|++|||||+...  +++.+.+.|+|++++++|+.|+++++|++.|+|++++.+++|++++|..+..+
T Consensus        81 ~~~~~g~--iDilVnnAg~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~  153 (260)
T d1h5qa_          81 IDADLGP--ISGLIANAGVSVV--KPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQII  153 (260)
T ss_dssp             HHHHSCS--EEEEEECCCCCCC--SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC
T ss_pred             HHHHhCC--CcEeccccccccc--CCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccc
Confidence            8888885  6699999999765  45999999999999999999999999999999987766665888888766543

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=1.4e-29  Score=195.65  Aligned_cols=137  Identities=26%  Similarity=0.369  Sum_probs=113.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.+..+             .+..+.+|++|.  +++.++++.++
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~-------------~~~~~~~Dv~~~~~v~~~~~~~~~~   70 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK-------------GLFGVEVDVTDSDAVDRAFTAVEEH   70 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-------------TSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc-------------CceEEEEecCCHHHHHHHHHHHHHh
Confidence            467999999999999999999999999999999999976532             346789999985  36777888998


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ++++|  ++|||||+..+  +++.+.+.|+|++++++|+.+++.++|+++|.|++++.|+ ||++||.++..+.|+.
T Consensus        71 ~g~iD--iLVnnAG~~~~--~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~-Iv~isS~~~~~~~~~~  142 (237)
T d1uzma1          71 QGPVE--VLVSNAGLSAD--AFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGR-MIFIGSVSGLWGIGNQ  142 (237)
T ss_dssp             HSSCS--EEEEECSCCC-------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEE-EEEECCCCC-----CC
T ss_pred             cCCce--EEEeeeccccc--ccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCc-eEEEcchhhccCCccc
Confidence            88655  99999998765  4599999999999999999999999999999999998777 9999999999888754

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=99.96  E-value=4.6e-29  Score=196.90  Aligned_cols=147  Identities=17%  Similarity=0.282  Sum_probs=124.4

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++     +.++..+.+|+++.  .++.++++.+
T Consensus         1 M~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~   75 (276)
T d1bdba_           1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH-----GDNVLGIVGDVRSLEDQKQAASRCVA   75 (276)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCCeeEEecccccHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999999888777665     34688899999975  3677788889


Q ss_pred             HhcCCCccEEEEeccccCCcc---cccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYA---RFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~---~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +++++|  ++|||||+.....   ....+.++++|++++++|+.|++.++|+++|.|++++ |+ ||+++|.++..+.|.
T Consensus        76 ~~g~id--ilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~-iI~i~S~~~~~~~~~  151 (276)
T d1bdba_          76 RFGKID--TLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GN-VIFTISNAGFYPNGG  151 (276)
T ss_dssp             HHSCCC--EEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CE-EEEECCGGGTSTTSS
T ss_pred             HhCCcc--cccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CC-ceeeeechhccCCCC
Confidence            998755  9999999875432   1234555678999999999999999999999998764 76 999999999988885


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      +
T Consensus       152 ~  152 (276)
T d1bdba_         152 G  152 (276)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.1e-29  Score=198.45  Aligned_cols=149  Identities=22%  Similarity=0.343  Sum_probs=129.4

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhc---CCceEEEEEEecCCC--chHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKY---AKTQIKSVVVDFSGD--LDEGVER  123 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~--~~~~~~~  123 (206)
                      -.++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++++..   .+.++..+.+|+++.  +++.+++
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~   87 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS   87 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999997643   356899999999985  3677788


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      +.+.++++|  ++|||||+...  .++.+.+.|+|++++++|+.|+++++|+++|.|++++.++ ||++||. +..+.|.
T Consensus        88 ~~~~~G~iD--iLVnnAg~~~~--~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~-Ii~~ss~-~~~~~~~  161 (297)
T d1yxma1          88 TLDTFGKIN--FLVNNGGGQFL--SPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGS-IVNIIVP-TKAGFPL  161 (297)
T ss_dssp             HHHHHSCCC--EEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEE-EEEECCC-CTTCCTT
T ss_pred             HHHHhCCeE--EEEeecccccc--CchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccc-ccccccc-ccccccc
Confidence            888888655  99999998765  4599999999999999999999999999999999988787 9988763 4445553

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-29  Score=199.58  Aligned_cols=142  Identities=22%  Similarity=0.279  Sum_probs=122.5

Q ss_pred             cEEEEECCCChHHHHHHHHHHHC-CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhcC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIEG  130 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~  130 (206)
                      ++++||||++|||+++|++|+++ |++|++++|+.++++++.+++++.+  .++.++.||++|.  ++++++++.+++++
T Consensus         4 rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~   81 (275)
T d1wmaa1           4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEYGG   81 (275)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             eEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence            55699999999999999999986 8999999999999999999998864  4567789999974  46777888888885


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                        +|++|||||+..+.  ++.+.+.++|++++++|++|++++++.++|.|++  .|+ ||++||..+..+.+.+
T Consensus        82 --iDiLVnNAGi~~~~--~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~--~g~-ivnisS~~~~~~~~~~  148 (275)
T d1wmaa1          82 --LDVLVNNAGIAFKV--ADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKP--QGR-VVNVSSIMSVRALKSC  148 (275)
T ss_dssp             --EEEEEECCCCCCCT--TCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEE-EEEECCHHHHHHHHTS
T ss_pred             --cEEEEEcCCcCCCC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCC-cccccccceecccccc
Confidence              66999999998653  4778888999999999999999999999999954  366 9999999888776543

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.9e-28  Score=190.31  Aligned_cols=147  Identities=21%  Similarity=0.274  Sum_probs=127.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      ++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++... .+.......+|..+..  +...+.+.+.+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL-GAASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-TCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhh-hcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999999999999999999887765 3567778888887642  45556777777


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +.++  +++||||....  .++.+.+.|++++++++|+.|++.+++.++|+|++ +.|+ ||++||.++..+.|..
T Consensus        91 g~~~--~li~nag~~~~--~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~-~~G~-ii~isS~~~~~~~p~~  160 (269)
T d1xu9a_          91 GGLD--MLILNHITNTS--LNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQ-SNGS-IVVVSSLAGKVAYPMV  160 (269)
T ss_dssp             TSCS--EEEECCCCCCC--CCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCE-EEEEEEGGGTSCCTTC
T ss_pred             CCcc--ccccccccccc--cccccCCHHHhhhheeeehhhHHHHHHHHHHHHHh-cCCc-ceEeccchhcCCCCCc
Confidence            7655  99999998765  34888999999999999999999999999999864 4577 9999999999999854

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-28  Score=191.05  Aligned_cols=142  Identities=23%  Similarity=0.328  Sum_probs=124.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~  128 (206)
                      .+||+++||||++|||+++|++|+++|++|++++|+.+++++..+++.+.+++.++..+.+|+++.  +++.++.+.+++
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            369999999999999999999999999999999999999999999998776678899999999985  367788888999


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCC--CceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKK--GLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~~iv~isS~~~~~~~~~~  204 (206)
                      +++|  ++|||||+...          ++|++.+++|+.+++.+++.++|+|.+++.  +++||++||.++..+.|.+
T Consensus        81 G~iD--ilVnnAg~~~~----------~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~~~~  146 (254)
T d2gdza1          81 GRLD--ILVNNAGVNNE----------KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQ  146 (254)
T ss_dssp             SCCC--EEEECCCCCCS----------SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTC
T ss_pred             CCcC--eeccccccccc----------ccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCCCCc
Confidence            9655  99999998643          247899999999999999999999977643  3459999999999998865

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=99.95  E-value=9.5e-28  Score=187.11  Aligned_cols=143  Identities=21%  Similarity=0.236  Sum_probs=119.7

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC---chHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD---LDEGVERIK  125 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~~  125 (206)
                      ++++||+++||||++|||+++|++|+++|++|++++|+.++.+++ +++....++..+....+|++.+   .++.++++.
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   79 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL-AELKAINPKVNITFHTYDVTVPVAESKKLLKKIF   79 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHH-HHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHH-HHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999988876555 4455555778899999999843   356778888


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC--CCceEEEeccccccccccC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK--KGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~~iv~isS~~~~~~~~~  203 (206)
                      +++++  +|++|||||..          ++++|++++++|+.|++.++++++|.|.+++  .+++||++||.++..+.|+
T Consensus        80 ~~~g~--iDilvnnAG~~----------~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~~~  147 (254)
T d1sbya1          80 DQLKT--VDILINGAGIL----------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQ  147 (254)
T ss_dssp             HHHSC--CCEEEECCCCC----------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTT
T ss_pred             HHcCC--CCEEEeCCCCC----------CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCCCC
Confidence            88886  45999999954          2456899999999999999999999997663  2335999999999998886


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      +
T Consensus       148 ~  148 (254)
T d1sbya1         148 V  148 (254)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=6.3e-28  Score=186.04  Aligned_cols=134  Identities=24%  Similarity=0.346  Sum_probs=115.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      ++||+++||||++|||+++|++|+++|++|++++|+++.+++.         +.  ....+|+++.    ++.+.+++++
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~---------~~--~~~~~Dv~~~----~~~~~~~~g~   66 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS---------GH--RYVVCDLRKD----LDLLFEKVKE   66 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT---------CS--EEEECCTTTC----HHHHHHHSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhc---------CC--cEEEcchHHH----HHHHHHHhCC
Confidence            5799999999999999999999999999999999998665431         22  3467888865    4566777886


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                        +|++|||||+...  .++.+.+.|+|++.+++|+.+++.++|+++|.|++++.|+ ||+++|..+..+.|.+
T Consensus        67 --iD~lVnnAG~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~-ii~i~S~~~~~~~~~~  135 (234)
T d1o5ia_          67 --VDILVLNAGGPKA--GFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGR-IVAITSFSVISPIENL  135 (234)
T ss_dssp             --CSEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCGGGTSCCTTB
T ss_pred             --CcEEEecccccCC--cchhhhhhHHHHHHhhhhhhhhhhhhhccccccccccccc-cccccccccccccccc
Confidence              4599999998755  4589999999999999999999999999999999988888 9999999998888765

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-27  Score=188.96  Aligned_cols=147  Identities=23%  Similarity=0.328  Sum_probs=120.2

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEE---EEcChhhHHHHHHHHHHh-cCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVL---VGRNPDKLKDVSDSIQAK-YAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~---~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      .|+++||||++|||+++|++|+++|++|+.   ++|+.+..+++.+..++. ..+.++..+.+|++|.  +.++.+.+..
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~--~~~~~~~~~~   79 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDS--KSVAAARERV   79 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCH--HHHHHHHHTC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccch--Hhhhhhhhhc
Confidence            578999999999999999999999987554   456665555555544442 2467899999999987  4555555554


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ....+|++|||||.....  ++++.+.|+|++++++|+.|+++++|+++|+|++++.|+ ||++||.+|..+.|++
T Consensus        80 ~~g~idilvnnag~~~~~--~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~-Iv~isS~~g~~~~~~~  152 (285)
T d1jtva_          80 TEGRVDVLVCNAGLGLLG--PLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGR-VLVTGSVGGLMGLPFN  152 (285)
T ss_dssp             TTSCCSEEEECCCCCCCS--CGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEEEEGGGTSCCTTC
T ss_pred             cccchhhhhhcccccccc--cccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCc-eEEEechhhcCCCCCc
Confidence            333577999999998764  488999999999999999999999999999999988888 9999999999999865

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.95  E-value=1.9e-27  Score=185.30  Aligned_cols=138  Identities=17%  Similarity=0.140  Sum_probs=118.4

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC--CchHHHHHHHHHhcCCC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG--DLDEGVERIKEAIEGLD  132 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~~~  132 (206)
                      +++||||++|||+++|++|+++|++|++.+|+.++++++.+.... +       ..+|+++  +.++.++++.++++++|
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~-~-------~~~dv~~~~~~~~~~~~~~~~~G~iD   73 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAET-Y-------PQLKPMSEQEPAELIEAVTSAYGQVD   73 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHH-C-------TTSEECCCCSHHHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCc-E-------EEeccCCHHHHHHHHHHHHHHcCCCC
Confidence            799999999999999999999999999999999888776544322 1       2356665  44788899999999755


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                        ++|||||+..+. +++++.+.|+|++.+++|+.++++++|+++|+|++++.|+ ||++||.++..+.|..
T Consensus        74 --iLVnNAg~~~~~-~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~-IV~isS~~~~~~~~~~  141 (252)
T d1zmta1          74 --VLVSNDIFAPEF-QPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGH-IIFITSATPFGPWKEL  141 (252)
T ss_dssp             --EEEEECCCCCCC-CCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE-EEEECCSTTTSCCTTC
T ss_pred             --EEEECCcCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccce-eecccccccccccccc
Confidence              999999987542 5689999999999999999999999999999999988887 9999999999988854

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=7.5e-27  Score=181.42  Aligned_cols=142  Identities=21%  Similarity=0.252  Sum_probs=114.7

Q ss_pred             cEEEEECCCChHHHHHHHHHH---HCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHh
Q 028656           54 SWALVTGPTDGIGKSFAFQLA---KTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAI  128 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~---~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~  128 (206)
                      |+++||||++|||+++|++|+   ++|++|++++|+.++++++.+..+.   ..++..+.+|++|..  ++.++.+.+..
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~i~~~~   79 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN---HSNIHILEIDLRNFDAYDKLVADIEGVT   79 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH---CTTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhc---CCcEEEEEEEeccHHHHHHHHhhhHHHh
Confidence            789999999999999999996   4799999999999998887654443   456888999999853  55566664432


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC-----------CCCceEEEeccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR-----------KKGLSMLNIGKAEL  197 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-----------~~g~~iv~isS~~~  197 (206)
                      +..++|++|||||+.... .++.+.+.++|++++++|+.|++.+++.++|+|+++           +.|+ +|+++|..|
T Consensus        80 ~~~~iDiLvnNAg~~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~-ii~i~S~~g  157 (248)
T d1snya_          80 KDQGLNVLFNNAGIAPKS-ARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAA-IINMSSILG  157 (248)
T ss_dssp             GGGCCSEEEECCCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCE-EEEECCGGG
T ss_pred             hcCCcceEEeeccccccC-cccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccc-ccccccccc
Confidence            222466999999987653 357889999999999999999999999999999764           3455 999999987


Q ss_pred             ccc
Q 028656          198 MCS  200 (206)
Q Consensus       198 ~~~  200 (206)
                      ..+
T Consensus       158 ~~~  160 (248)
T d1snya_         158 SIQ  160 (248)
T ss_dssp             CST
T ss_pred             ccC
Confidence            754

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=99.94  E-value=1.5e-26  Score=178.98  Aligned_cols=137  Identities=21%  Similarity=0.287  Sum_probs=111.7

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++     +.++..+++|++++  +++.++.+.++
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dls~~~~i~~~~~~i~~~   76 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVVADVSDPKAVEAVFAEALEE   76 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----CSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999998877666554     45788899999975  36777888888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      ++++|  ++|||||....  .++.+.+.++|++++++|+.+++.++|+++|.|.+.  +. |+++||.+..
T Consensus        77 ~g~iD--iLinnAg~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~--~~-i~~~ss~a~~  140 (241)
T d2a4ka1          77 FGRLH--GVAHFAGVAHS--ALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEG--GS-LVLTGSVAGL  140 (241)
T ss_dssp             HSCCC--EEEEGGGGTTT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTT--CE-EEEECCCTTC
T ss_pred             hCCcc--Eeccccccccc--cchhhhhccccccccccccccccccccccccccccc--cc-eeeccccccc
Confidence            88655  99999998765  459999999999999999999999999999987432  33 6666665543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.94  E-value=6.6e-26  Score=178.31  Aligned_cols=146  Identities=18%  Similarity=0.272  Sum_probs=123.7

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC-hhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVER  123 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~  123 (206)
                      .+.+++||+++||||++|||+++|++|+++|++|++++|+ .+.++++.+++++.  +.++..+.+|++++  +++.+++
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~--g~~~~~~~~D~~~~~~v~~~~~~   89 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN--GSDAACVKANVGVVEDIVRMFEE   89 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhh--CCceeeEeCCCCCHHHHHHHHHH
Confidence            3456889999999999999999999999999999999887 46678888888774  56788999999984  3677788


Q ss_pred             HHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          124 IKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      +.+.++++|  ++|||+|....  .++.+.+.++|++.+++|+.|++.++|+++|+|.++  |+ +++++|..+....
T Consensus        90 ~~~~~g~id--ilV~nag~~~~--~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~--g~-~i~i~s~~~~~~~  160 (272)
T d1g0oa_          90 AVKIFGKLD--IVCSNSGVVSF--GHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG--GR-LILMGSITGQAKA  160 (272)
T ss_dssp             HHHHHSCCC--EEEECCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT--CE-EEEECCGGGTCSS
T ss_pred             HHHHhCCCC--ccccccccchh--hhhhhhhhhHHHHHhhhccceeeeeccccccccccc--cc-ccccccccccccc
Confidence            888888655  99999998765  458999999999999999999999999999999643  56 8888887765543

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-26  Score=178.59  Aligned_cols=139  Identities=22%  Similarity=0.346  Sum_probs=116.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      ++||+++||||++|||+++|++|+++|++|++++|++++++++.++       ..+....+|+.+.  +.++...+.+++
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~-------~~~~~~~~d~~~~--~~~~~~~~~~~~   74 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKY-------PGIQTRVLDVTKK--KQIDQFANEVER   74 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGS-------TTEEEEECCTTCH--HHHHHHHHHCSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc-------cCCceeeeecccc--cccccccccccc
Confidence            7799999999999999999999999999999999998877665432       2345566676543  677888888776


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc-cccC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC-SVRF  203 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~-~~~~  203 (206)
                        +|++|||||....  +++.+.+.++|++.+++|+.+++.++|++.|+|.+++.|+ ||++||..+.. +.+.
T Consensus        75 --id~lVn~ag~~~~--~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~-Ii~isS~~~~~~~~~~  143 (245)
T d2ag5a1          75 --LDVLFNVAGFVHH--GTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGN-IINMSSVASSVKGVVN  143 (245)
T ss_dssp             --CSEEEECCCCCCC--BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE-EEEECCSBTTTBCCTT
T ss_pred             --ceeEEecccccCC--CChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCce-eeeeechhhccCCccc
Confidence              5599999998866  4589999999999999999999999999999999888787 99999987754 4443

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.94  E-value=2.3e-26  Score=179.80  Aligned_cols=146  Identities=21%  Similarity=0.256  Sum_probs=121.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEE-cChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG-RNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++.||+++||||++|||+++|++|+++|++|++++ |+.+.++++.+++++.  +.+++.+.+|+++.  +++.++.+.+
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~--g~~~~~~~~D~~~~~~v~~~~~~~~~   80 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL--GAQGVAIQADISKPSEVVALFDKAVS   80 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHc--CCCceEecCCCCCHHHHHHHHHHHHH
Confidence            46799999999999999999999999999999875 5556688888888874  45778999999974  3677788888


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc-cccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC-SVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~-~~~~~  204 (206)
                      ++++  +|++|||||....  +++.+.+.++|++.+++|+.+++.++|+++|+|+++  ++ +++++|..+.. +.|.+
T Consensus        81 ~~g~--idilinnag~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~--g~-~iii~s~~~~~~~~~~~  152 (259)
T d1ja9a_          81 HFGG--LDFVMSNSGMEVW--CDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG--GR-IILTSSIAAVMTGIPNH  152 (259)
T ss_dssp             HHSC--EEEEECCCCCCCC--CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE--EE-EEEECCGGGTCCSCCSC
T ss_pred             HcCC--CcEEEeccccccc--cccccchHHHHHHHHhhccceeeeehhhhhhhhhcC--Cc-ccccccccccccCCCCc
Confidence            8886  6699999998765  458999999999999999999999999999999543  55 77776765544 55543

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=1.5e-26  Score=179.85  Aligned_cols=144  Identities=21%  Similarity=0.321  Sum_probs=118.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +.|+|+||||++|||+++|++|+++|+  +|++.+|+.++++++.+.     .+.++.++.+|+++.  +++.++.+.+.
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~-----~~~~~~~~~~Dvs~~~~v~~~~~~i~~~   76 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI-----KDSRVHVLPLTVTCDKSLDTFVSKVGEI   76 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC-----CCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHh-----hCCceEEEEEecCCHHHHHHHHHHHHHH
Confidence            469999999999999999999999996  688899999888765432     356788999999975  36777888888


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC-----------CCceEEEecccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK-----------KGLSMLNIGKAE  196 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-----------~g~~iv~isS~~  196 (206)
                      ++..++|++|||||+..+. .++.+.+.|+|++++++|+.|++.+++.++|+|++++           .+. +++++|..
T Consensus        77 ~~~~~idilinnAG~~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~-~i~~s~~~  154 (250)
T d1yo6a1          77 VGSDGLSLLINNAGVLLSY-GTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAA-VITISSGL  154 (250)
T ss_dssp             HGGGCCCEEEECCCCCCCB-CTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCE-EEEECCGG
T ss_pred             hCCCCeEEEEEcCcccCCC-CccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecc-cccccccc
Confidence            8765678999999987653 3478899999999999999999999999999997652           244 89998876


Q ss_pred             cccccc
Q 028656          197 LMCSVR  202 (206)
Q Consensus       197 ~~~~~~  202 (206)
                      +..+.+
T Consensus       155 ~~~~~~  160 (250)
T d1yo6a1         155 GSITDN  160 (250)
T ss_dssp             GCSTTC
T ss_pred             ccccCC
Confidence            665443

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=3.2e-26  Score=178.60  Aligned_cols=149  Identities=17%  Similarity=0.150  Sum_probs=121.7

Q ss_pred             ccccCCcEEEEECCCC--hHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHH
Q 028656           48 NLRKYGSWALVTGPTD--GIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVER  123 (206)
Q Consensus        48 ~~~~~~k~vlItGas~--giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~  123 (206)
                      +++++||+++||||+|  |||+++|++|+++|++|++.+|+++..++..+....   ......+.+|+++.  +++.++.
T Consensus         3 ~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~   79 (256)
T d1ulua_           3 TVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEA---LGGALLFRADVTQDEELDALFAG   79 (256)
T ss_dssp             EECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH---TTCCEEEECCTTCHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhc---cCcccccccccCCHHHHHHHHHH
Confidence            4678899999999986  999999999999999999999987655554443333   33456789999975  3677788


Q ss_pred             HHHHhcCCCccEEEEeccccCCc--ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          124 IKEAIEGLDVGVLINNVGISYPY--ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      +.+++++  +|++|||||+....  ..++.+.+.++|++.+++|+.+++.++|++.|.|++  .|+ ||++||..+..+.
T Consensus        80 ~~~~~g~--iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~--~G~-Iv~isS~~~~~~~  154 (256)
T d1ulua_          80 VKEAFGG--LDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLRE--GGG-IVTLTYYASEKVV  154 (256)
T ss_dssp             HHHHHSS--EEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE--EEE-EEEEECGGGTSBC
T ss_pred             HHHhcCC--ceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhcc--CCE-EEEEeehHhcCCC
Confidence            8888886  56999999986532  234778899999999999999999999999998854  366 9999999999988


Q ss_pred             cCC
Q 028656          202 RFH  204 (206)
Q Consensus       202 ~~~  204 (206)
                      |.+
T Consensus       155 ~~~  157 (256)
T d1ulua_         155 PKY  157 (256)
T ss_dssp             TTC
T ss_pred             CCc
Confidence            854

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=99.92  E-value=1.4e-24  Score=172.41  Aligned_cols=151  Identities=21%  Similarity=0.279  Sum_probs=130.3

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKE  126 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~  126 (206)
                      .+++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++.+.+ +.+...+.+|+++..  ++.++.+.+
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~   99 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIK   99 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhh
Confidence            46899999999999999999999999999999999999999999998887764 566788999999753  556677777


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .++++  |++|||||....  .++.+.+.+++++.+.+|..+.+.+.+...+.+...+.++.+++++|.++..+.|++
T Consensus       100 ~~g~i--DilvnnAg~~~~--~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~~~~  173 (294)
T d1w6ua_         100 VAGHP--NIVINNAAGNFI--SPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFV  173 (294)
T ss_dssp             HTCSC--SEEEECCCCCCC--SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTTC
T ss_pred             hcccc--chhhhhhhhccc--cccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhccccc
Confidence            77764  599999998765  348899999999999999999999999988888777666669999999888888754

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.2e-24  Score=167.28  Aligned_cols=147  Identities=18%  Similarity=0.211  Sum_probs=120.8

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEA  127 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~  127 (206)
                      +++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++     +.......+|..+.  .++....+...
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-----GNNCVFAPADVTSEKDVQTALALAKGK   76 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCCcccccccccccccccccccccccc
Confidence            367999999999999999999999999999999999999999888776     34567778888864  25555666666


Q ss_pred             hcCCCccEEEEeccccCCc----ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC------CCCceEEEeccccc
Q 028656          128 IEGLDVGVLINNVGISYPY----ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR------KKGLSMLNIGKAEL  197 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~----~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~------~~g~~iv~isS~~~  197 (206)
                      ....+  .+++|+++....    .+++.+.+.|+|++++++|+.|+++++|++.|+|..+      +.|. ||++||..+
T Consensus        77 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~-Ii~isS~~~  153 (248)
T d2o23a1          77 FGRVD--VAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGV-IINTASVAA  153 (248)
T ss_dssp             HSCCC--EEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEE-EEEECCTHH
T ss_pred             ccccc--ccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceE-EEEecchhh
Confidence            66545  888888776532    2346788899999999999999999999999998644      3445 999999999


Q ss_pred             cccccCC
Q 028656          198 MCSVRFH  204 (206)
Q Consensus       198 ~~~~~~~  204 (206)
                      ..+.|++
T Consensus       154 ~~~~~~~  160 (248)
T d2o23a1         154 FEGQVGQ  160 (248)
T ss_dssp             HHCCTTC
T ss_pred             ccCCCCc
Confidence            9988854

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=6.1e-24  Score=163.69  Aligned_cols=137  Identities=10%  Similarity=-0.027  Sum_probs=108.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~  129 (206)
                      +||+++||||++|||+++|++|+++|++|++++++..+.            ........+|..+.  .+...+.+.+.++
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE------------ASASVIVKMTDSFTEQADQVTAEVGKLLG   68 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT------------SSEEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc------------ccccceeecccCcHHHHHHHHHHHHHHhC
Confidence            489999999999999999999999999999999876431            22334445555432  2344566666666


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ..++|++|||||..... .++.+.+.|+|++.+++|+.+++.++++++|+|++  .|+ ||++||.++..+.|++
T Consensus        69 ~~~iD~lInnAG~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~--~G~-Iv~isS~~~~~~~~~~  139 (236)
T d1dhra_          69 DQKVDAILCVAGGWAGG-NAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE--GGL-LTLAGAKAALDGTPGM  139 (236)
T ss_dssp             TCCEEEEEECCCCCCCB-CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--EEE-EEEECCGGGGSCCTTB
T ss_pred             CCCceEEEECCcccccc-cchhcCCHHHHHHHHHHcchHHHHHHHHHHHhccc--ccc-eeEEccHHHcCCccCC
Confidence            65788999999975432 34667788999999999999999999999999853  366 9999999999988864

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.90  E-value=6.7e-23  Score=159.73  Aligned_cols=142  Identities=16%  Similarity=0.161  Sum_probs=117.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh---hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP---DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      .+++++||||++|||+++|++|+++|+ +|++++|+.   +..++..++++.  .+.++.++.||++|.  +.++.+.+.
T Consensus         8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~--~g~~v~~~~~Dv~d~--~~~~~~~~~   83 (259)
T d2fr1a1           8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEA--LGARTTVAACDVTDR--ESVRELLGG   83 (259)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHH--TTCEEEEEECCTTCH--HHHHHHHHT
T ss_pred             CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHh--ccccccccccccchH--HHHHHhhcc
Confidence            467999999999999999999999999 588999975   456666777765  367899999999986  556666665


Q ss_pred             hcCC-CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          128 IEGL-DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       128 ~~~~-~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      ..+. ++|.++||+|+....  ++.+.+.+++++.+++|+.|++++.+.+.    +.+.++ ||++||.++..+.|++
T Consensus        84 i~~~~~i~~vv~~ag~~~~~--~~~~~~~~~~~~~~~~~~~g~~~l~~~~~----~~~~~~-iv~~SS~a~~~g~~~~  154 (259)
T d2fr1a1          84 IGDDVPLSAVFHAAATLDDG--TVDTLTGERIERASRAKVLGARNLHELTR----ELDLTA-FVLFSSFASAFGAPGL  154 (259)
T ss_dssp             SCTTSCEEEEEECCCCCCCC--CGGGCCHHHHHHHTHHHHHHHHHHHHHHT----TSCCSE-EEEEEEHHHHTCCTTC
T ss_pred             cccccccccccccccccccc--ccccccHHHHHHHhhhhccchhHHHHHhh----ccCCce-EeeecchhhccCCccc
Confidence            5433 688999999998764  48999999999999999999999887643    345566 9999999999999976

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.89  E-value=1.3e-23  Score=161.70  Aligned_cols=136  Identities=13%  Similarity=0.033  Sum_probs=103.6

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~  130 (206)
                      .++|+||||++|||+++|++|+++|++|++++|+.++.            ........+|..+.  .+...+.+.+.+..
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ------------ADSNILVDGNKNWTEQEQSILEQTASSLQG   69 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTT------------SSEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhc------------ccccceeccccCchhHHHHHHHHHHHHhcC
Confidence            34579999999999999999999999999999987531            12223344444432  23334555555544


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .++|++|||||+.... .++.+.+.++|+.++++|+.+++.++|+++|+|++  .|+ ||++||..+..+.|++
T Consensus        70 g~iD~linnAG~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~--~g~-Iv~isS~~~~~~~~~~  139 (235)
T d1ooea_          70 SQVDGVFCVAGGWAGG-SASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP--GGL-LQLTGAAAAMGPTPSM  139 (235)
T ss_dssp             CCEEEEEECCCCCCCB-CTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--EEE-EEEECCGGGGSCCTTB
T ss_pred             CCeeEEEECCcccccc-cccccCcHHHHhhHhhhHHHHHHHHhhhccccccc--ceE-EEEeccHHhcCCcccc
Confidence            4688999999986543 23556667889999999999999999999999853  366 9999999999999865

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.87  E-value=8.1e-22  Score=156.19  Aligned_cols=146  Identities=16%  Similarity=0.156  Sum_probs=106.4

Q ss_pred             ccccCCcEEEEECCCC--hHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhc---------CC-ceEEEEEEecC-
Q 028656           48 NLRKYGSWALVTGPTD--GIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKY---------AK-TQIKSVVVDFS-  114 (206)
Q Consensus        48 ~~~~~~k~vlItGas~--giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~---------~~-~~~~~~~~d~~-  114 (206)
                      +++++||+++||||++  |||+++|++|+++|++|++++|+........+......         .. ..-....+|.. 
T Consensus         3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVF   82 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTC
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhc
Confidence            5778999999999875  99999999999999999999998754433322221110         00 11122333321 


Q ss_pred             ---------------------CCchHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHH
Q 028656          115 ---------------------GDLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVT  173 (206)
Q Consensus       115 ---------------------~~~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~  173 (206)
                                           +..++.++.+.+++++  +|++|||||......+++.+.+.|+|++.+++|+.+++.++
T Consensus        83 ~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~--iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~  160 (297)
T d1d7oa_          83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGS--IDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLL  160 (297)
T ss_dssp             CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSC--EEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHH
T ss_pred             cccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCC--Ccccccccccccccccchhhhhcccccccccchhhhhhhhh
Confidence                                 1235677888999986  55999999987654567999999999999999999999999


Q ss_pred             HHHhhhhHhCCCCceEEEecccccc
Q 028656          174 QAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       174 ~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      ++++|.|.++  +. ++++++.++.
T Consensus       161 ~~~~~~~~~~--g~-~~~~~~~~~~  182 (297)
T d1d7oa_         161 SHFLPIMNPG--GA-SISLTYIASE  182 (297)
T ss_dssp             HHHGGGEEEE--EE-EEEEECGGGT
T ss_pred             hHHHHHhhcC--Cc-ceeeeehhhc
Confidence            9999987544  44 5555554443

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.87  E-value=1.6e-21  Score=156.96  Aligned_cols=147  Identities=10%  Similarity=0.085  Sum_probs=113.9

Q ss_pred             CCcEEEEEC--CCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcC----------CceEEEEEEec------
Q 028656           52 YGSWALVTG--PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYA----------KTQIKSVVVDF------  113 (206)
Q Consensus        52 ~~k~vlItG--as~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~d~------  113 (206)
                      ++|+++|||  +++|||+++|++|+++|++|++.+++............+...          ........+|.      
T Consensus         1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (329)
T d1uh5a_           1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN   80 (329)
T ss_dssp             CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred             CCcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence            479999999  558999999999999999999999987655544433322111          11122333333      


Q ss_pred             --------------CC--CchHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHh
Q 028656          114 --------------SG--DLDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVL  177 (206)
Q Consensus       114 --------------~~--~~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~  177 (206)
                                    ++  ..++.++.+.+.+++  +|++|||||......+++.+.+.++|++.+++|++|++.++|+++
T Consensus        81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~--iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~  158 (329)
T d1uh5a_          81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGK--INMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFV  158 (329)
T ss_dssp             GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCC--EEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred             ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCC--CCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHH
Confidence                          33  346778899999996  559999999876555678999999999999999999999999999


Q ss_pred             hhhHhCCCCceEEEeccccccccccC
Q 028656          178 PGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       178 ~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      |+|.+  .|+ ||++||.++..+.|.
T Consensus       159 ~~m~~--~Gs-Iv~iss~~~~~~~p~  181 (329)
T d1uh5a_         159 NIMKP--QSS-IISLTYHASQKVVPG  181 (329)
T ss_dssp             GGEEE--EEE-EEEEECGGGTSCCTT
T ss_pred             hhccc--ccc-cccceeehhcccccc
Confidence            99843  355 999999999998884

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=99.84  E-value=1.8e-20  Score=147.32  Aligned_cols=146  Identities=22%  Similarity=0.171  Sum_probs=107.2

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC-hhhHHHHHHHHHHhcCCceEEEEEEe-----------------cCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN-PDKLKDVSDSIQAKYAKTQIKSVVVD-----------------FSG  115 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~d-----------------~~~  115 (206)
                      .+++||||++|||+++|++|+++|++|++.+++ .+..+++.+++.+.++ .....+++|                 +++
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~dv~~   81 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNVATAPVSGADGSAPVTL   81 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcC-CceEEEEeecccccccccccccccccCCC
Confidence            379999999999999999999999999998764 5678888888887653 445555555                 443


Q ss_pred             C--chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHH--------------HHHhhhhhHHHHHHHHHhhh
Q 028656          116 D--LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLK--------------NLIKVNVEGTTKVTQAVLPG  179 (206)
Q Consensus       116 ~--~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~--------------~~~~~N~~g~~~~~~~~~~~  179 (206)
                      .  +++.++.+.++++++|  ++|||||+..+.  ++.+.+.++|+              ..+++|+.+++.+.|.+.+.
T Consensus        82 ~~~v~~~~~~~~~~~G~iD--iLVnnAG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~  157 (284)
T d1e7wa_          82 FTRCAELVAACYTHWGRCD--VLVNNASSFYPT--PLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHR  157 (284)
T ss_dssp             HHHHHHHHHHHHHHHSCCC--EEEECCCCCCCC--CCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCC--EEEecCCccCCC--chhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccch
Confidence            2  3566788888888655  999999998653  36666655544              47899999999999998876


Q ss_pred             hH-----hCCCCceEEEeccccccccccCC
Q 028656          180 ML-----KRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       180 ~~-----~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      +.     +++.+.+|++++|..+..+.|++
T Consensus       158 ~~~~~~~~~~~~~~ii~~~s~~~~~~~~~~  187 (284)
T d1e7wa_         158 VAGTPAKHRGTNYSIINMVDAMTNQPLLGY  187 (284)
T ss_dssp             HHTSCGGGSCSCEEEEEECCTTTTSCCTTC
T ss_pred             hhhhHHHhcCCCCcccccccccccCCccce
Confidence            43     22333459999999988887754

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.9e-19  Score=138.66  Aligned_cols=146  Identities=14%  Similarity=0.117  Sum_probs=109.4

Q ss_pred             cCCcEEEEECCCC--hHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHH
Q 028656           51 KYGSWALVTGPTD--GIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGas~--giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~  126 (206)
                      ++||+++||||++  |||+++|+.|+++|++|++++|+++..+... ++...  .........|+++..  ++.++.+.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVE-EFAAQ--LGSDIVLQCDVAEDASIDTMFAELGK   79 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHH-HHHHH--TTCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HHHhh--cCCcceeecccchHHHHHHHHHHhhh
Confidence            6799999999998  8999999999999999999999966555544 44332  334456677777642  333344444


Q ss_pred             HhcCCCccEEEEeccccCCcc---cccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYA---RFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~---~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .++  .+|++||||+......   ...++...+.+...+++|+.+.+.+.+.+.|.|.  +.+. |+++||..+..+.|.
T Consensus        80 ~~~--~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-Ii~iss~~~~~~~~~  154 (258)
T d1qsga_          80 VWP--KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLN--PGSA-LLTLSYLGAERAIPN  154 (258)
T ss_dssp             TCS--SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEE--EEEE-EEEEECGGGTSBCTT
T ss_pred             ccc--ccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCcE-EEEecchhhccCCCC
Confidence            444  4679999998865322   1234567788999999999999999999999873  2344 999999999998885


Q ss_pred             C
Q 028656          204 H  204 (206)
Q Consensus       204 ~  204 (206)
                      +
T Consensus       155 ~  155 (258)
T d1qsga_         155 Y  155 (258)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=99.79  E-value=4.1e-19  Score=138.41  Aligned_cols=147  Identities=18%  Similarity=0.156  Sum_probs=112.3

Q ss_pred             ccCCcEEEEECC--CChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHH
Q 028656           50 RKYGSWALVTGP--TDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIK  125 (206)
Q Consensus        50 ~~~~k~vlItGa--s~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~  125 (206)
                      .++||+++||||  ++|||+++|++|+++|++|++++|+.+++.+   ++.+. .+.+...+++|++++.  ++.++.+.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~---~~~~~-~~~~~~~~~~dv~~~~~~~~~~~~v~   78 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQ---RITDR-LPAKAPLLELDVQNEEHLASLAGRVT   78 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHH---HHHTT-SSSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHH---HHHHH-cCCceeeEeeecccccccccccchhh
Confidence            367999999994  5799999999999999999999999876533   22222 2455677899999753  56667888


Q ss_pred             HHhcCC-CccEEEEeccccCC---cccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          126 EAIEGL-DVGVLINNVGISYP---YARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       126 ~~~~~~-~id~lvnnAg~~~~---~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      +.++.. .+|+++||||....   ...++.+.+.+++.+.+++|+.+.+...+...+.+   +.+. +++++|.....+.
T Consensus        79 ~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~i~~~s~~~~~~~  154 (268)
T d2h7ma1          79 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIM---NPGG-SIVGMDFDPSRAM  154 (268)
T ss_dssp             HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE---EEEE-EEEEEECCCSSCC
T ss_pred             hccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhc---cccc-ccccccccccccC
Confidence            877765 48899999997642   22357788999999999999999999999988754   2234 6666666666666


Q ss_pred             cCC
Q 028656          202 RFH  204 (206)
Q Consensus       202 ~~~  204 (206)
                      |.+
T Consensus       155 p~~  157 (268)
T d2h7ma1         155 PAY  157 (268)
T ss_dssp             TTT
T ss_pred             ccc
Confidence            643

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=7.4e-19  Score=134.79  Aligned_cols=134  Identities=19%  Similarity=0.236  Sum_probs=100.9

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~  130 (206)
                      +|+++||||++|||+++|++|+++|++|++++|+.+.              .+....++|+++..  .+......+.   
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~--------------~~~~~~~~d~~~~~~~~~~~~~~~~~---   63 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG--------------EDLIYVEGDVTREEDVRRAVARAQEE---   63 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS--------------SSSEEEECCTTCHHHHHHHHHHHHHH---
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc--------------ccceEeeccccchhhhHHHHHhhhcc---
Confidence            5899999999999999999999999999999998643              23456788888642  2222222222   


Q ss_pred             CCccEEEEeccccCCc--ccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhh------HhCCCCceEEEecccccccccc
Q 028656          131 LDVGVLINNVGISYPY--ARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGM------LKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~--~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~------~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      ...+..+++++.....  .......+.+.+++.+++|+.+++.+++.+.+.+      .+++.|+ ||++||..+..+.|
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~-Ii~isS~~~~~~~~  142 (241)
T d1uaya_          64 APLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGV-IVNTASVAAFEGQI  142 (241)
T ss_dssp             SCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEE-EEEECCTHHHHCCT
T ss_pred             ccccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCcee-eeeecchhhccCCC
Confidence            2344666776654321  2235567889999999999999999999999884      4445566 99999999999888


Q ss_pred             CC
Q 028656          203 FH  204 (206)
Q Consensus       203 ~~  204 (206)
                      ++
T Consensus       143 ~~  144 (241)
T d1uaya_         143 GQ  144 (241)
T ss_dssp             TC
T ss_pred             Cc
Confidence            64

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.77  E-value=8.4e-18  Score=130.61  Aligned_cols=148  Identities=19%  Similarity=0.164  Sum_probs=108.2

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh-HHHHHHHHHHhcCCceEEEEEEecCCCc------hHHHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK-LKDVSDSIQAKYAKTQIKSVVVDFSGDL------DEGVERIKE  126 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~~~~  126 (206)
                      .+++||||++|||+++|++|+++|++|++++|+.++ .+++.+++.+.+ +.+.....+|..+..      ++.++.+.+
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIIDCSFR   80 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhc-CCceEEEecccccchhHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999998654 577788887764 445666666665432      244456777


Q ss_pred             HhcCCCccEEEEeccccCCccc---------ccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCC----CCceEEEec
Q 028656          127 AIEGLDVGVLINNVGISYPYAR---------FFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRK----KGLSMLNIG  193 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~---------~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~----~g~~iv~is  193 (206)
                      ++++  +|++|||||+..+.+.         ...+...+.+...+..|+.+++...+...+.+....    .+..+++++
T Consensus        81 ~~g~--iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (266)
T d1mxha_          81 AFGR--CDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLC  158 (266)
T ss_dssp             HHSC--CCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEEC
T ss_pred             HhCC--CCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhh
Confidence            7886  5599999998765321         012334566788899999999999999888775432    223488999


Q ss_pred             cccccccccCC
Q 028656          194 KAELMCSVRFH  204 (206)
Q Consensus       194 S~~~~~~~~~~  204 (206)
                      |..+..+.|++
T Consensus       159 ~~~~~~~~~~~  169 (266)
T d1mxha_         159 DAMTDLPLPGF  169 (266)
T ss_dssp             CGGGGSCCTTC
T ss_pred             hccccccCcch
Confidence            99988888765

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.76  E-value=4.7e-20  Score=137.28  Aligned_cols=117  Identities=21%  Similarity=0.276  Sum_probs=94.5

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      ..+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++....   .+....+|+++.     +.+.+.
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~-----~~~~~~   89 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADD-----ASRAEA   89 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSH-----HHHHHH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccH-----HHHHHH
Confidence            456789999999999999999999999999999999999999999999887743   334577888876     445555


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhh
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGM  180 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~  180 (206)
                      +++  +|++|||||+.      +...+.|+|++.+++|+.+.++....+.+.+
T Consensus        90 ~~~--iDilin~Ag~g------~~~~~~e~~~~~~~~nv~~~~~~~~~~~~~~  134 (191)
T d1luaa1          90 VKG--AHFVFTAGAIG------LELLPQAAWQNESSIEIVADYNAQPPLGIGG  134 (191)
T ss_dssp             TTT--CSEEEECCCTT------CCCBCHHHHHTCTTCCEEEECCCSSSCSBTT
T ss_pred             hcC--cCeeeecCccc------cccCCHHHHHhhhcceeehhHhhHHHHHHHh
Confidence            665  45999999964      2356889999999999988877665554433

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=99.76  E-value=7.8e-19  Score=137.35  Aligned_cols=145  Identities=15%  Similarity=0.181  Sum_probs=98.9

Q ss_pred             cCCcEEEEECCCC--hHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC--chHHHHHHHH
Q 028656           51 KYGSWALVTGPTD--GIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD--LDEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGas~--giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~  126 (206)
                      ++||+++||||+|  |||+++|++|+++|++|++++|+++ +++..+++.+.+.  ......+|++++  .++.++++.+
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~   79 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELN--SPYVYELDVSKEEHFKSLYNSVKK   79 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHhhCC--ceeEeeecccchhhHHHHHHHHHH
Confidence            6799999999865  9999999999999999999999954 4444555555433  345678888864  3566677888


Q ss_pred             HhcCCCccEEEEeccccCCcc--cccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccC
Q 028656          127 AIEGLDVGVLINNVGISYPYA--RFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRF  203 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~--~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~  203 (206)
                      .++.  +|++|||+|......  .+..+...+.+...+.++..+.....+...+.   .+.+..|+++|+.+...+.+.
T Consensus        80 ~~g~--id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~s~~~~~~~~~~  153 (274)
T d2pd4a1          80 DLGS--LDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPL---LNNGASVLTLSYLGSTKYMAH  153 (274)
T ss_dssp             HTSC--EEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG---EEEEEEEEEEECGGGTSBCTT
T ss_pred             HcCC--CCeEEeecccccccccccccccccchhhhhhhccccccccccccccccc---cccCcceeeeccccccccccc
Confidence            8775  669999999875421  12334445555556666666666666655543   334454666666665555543

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=3.7e-15  Score=120.37  Aligned_cols=130  Identities=18%  Similarity=0.160  Sum_probs=87.3

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh-----hHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD-----KLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      |+|+||||+|-||..++++|.++|++|++++|...     +++....+...  ...++.++++|++|.  +.++.+   +
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~--~~~~~~---~   74 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHT--CNPKFHLHYGDLSDT--SNLTRI---L   74 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-----------------------CCEEECCCCSSCH--HHHHHH---H
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhh--cCCCeEEEEeecCCH--HHHHHH---H
Confidence            78999999999999999999999999999999543     33333222222  345788899999986  334433   3


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      .+.++|+++|+|+......      +.++.+.++++|+.|+.++++++...- .++..+ +|++||...+
T Consensus        75 ~~~~~d~v~h~aa~~~~~~------~~~~~~~~~~~Nv~gt~nllea~~~~~-~~~~~r-~i~~SS~~vY  136 (357)
T d1db3a_          75 REVQPDEVYNLGAMSHVAV------SFESPEYTADVDAMGTLRLLEAIRFLG-LEKKTR-FYQASTSELY  136 (357)
T ss_dssp             HHHCCSEEEECCCCCTTTT------TTSCHHHHHHHHTHHHHHHHHHHHHTT-CTTTCE-EEEEEEGGGG
T ss_pred             hccCCCEEEEeecccccch------hhhCHHHHHHHHHHHHHHHHHHHHHhC-CCCCcE-EEEEEchhhh
Confidence            3345679999999865321      223346789999999999999875421 122345 9999997654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.51  E-value=9.1e-14  Score=106.94  Aligned_cols=112  Identities=21%  Similarity=0.303  Sum_probs=80.2

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc--hHHHHHHHHHhcCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL--DEGVERIKEAIEGL  131 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~  131 (206)
                      |+++||||++|||+++|++|+++|++|++++|+.++                   ..+|+.+..  +....+...+..+ 
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~-------------------~~~d~~~~~~~~~~~~~~~~~~~~-   61 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE-------------------VIADLSTAEGRKQAIADVLAKCSK-   61 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS-------------------EECCTTSHHHHHHHHHHHHTTCTT-
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH-------------------HHHHhcCHHHHHHHHHHHHHHhCC-
Confidence            789999999999999999999999999999997542                   134555432  1111222222222 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKA  195 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~  195 (206)
                      ++|++|||||+....         +.+.+..++|..+...+.+...|.+.+...+. ..++++.
T Consensus        62 ~id~lv~~Ag~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  115 (257)
T d1fjha_          62 GMDGLVLCAGLGPQT---------KVLGNVVSVNYFGATELMDAFLPALKKGHQPA-AVVISSV  115 (257)
T ss_dssp             CCSEEEECCCCCTTC---------SSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCE-EEEECCG
T ss_pred             CCcEEEEcCCCCCcH---------HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCc-ceeeeec
Confidence            477999999976431         23577789999999999999999887665555 5555543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=3.5e-14  Score=113.54  Aligned_cols=131  Identities=17%  Similarity=0.154  Sum_probs=91.0

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      .++||||+|-||..++++|+++|++|++++|.....+......... ....+.++++|++|.  +.++++.+.   .++|
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~--~~l~~~~~~---~~~d   75 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL-GGKHPTFVEGDIRNE--ALMTEILHD---HAID   75 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHH-HTSCCEEEECCTTCH--HHHHHHHHH---TTCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhh-cCCCCEEEEeecCCH--HHHHHHHhc---cCCC
Confidence            4999999999999999999999999999987432211111111111 244678899999986  444444333   3467


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      ++||.|+....      ..+.++..+++++|+.|+.++++++..    .+..+ +|++||.+.+.+.+
T Consensus        76 ~ViHlAa~~~~------~~~~~~~~~~~~~Nv~gt~nlL~~~~~----~~v~~-~i~~Ss~~vy~~~~  132 (338)
T d1udca_          76 TVIHFAGLKAV------GESVQKPLEYYDNNVNGTLRLISAMRA----ANVKN-FIFSSSATVYGDQP  132 (338)
T ss_dssp             EEEECCSCCCH------HHHHHCHHHHHHHHHHHHHHHHHHHHH----HTCCE-EEEEEEGGGGCSCC
T ss_pred             EEEECCCccch------hhHHhCHHHHHHhHHHHHHHHHHHHHH----hCCCE-EEecCcceEEcccc
Confidence            99999986432      123334568899999999999998754    34455 99999987665444

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.46  E-value=4.4e-13  Score=107.27  Aligned_cols=129  Identities=18%  Similarity=0.170  Sum_probs=93.2

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .+||+|+||||+|-||..++++|.++|++|+.+.|+.++...+.+.............+..|+.+.  .   .+.+.+. 
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~--~---~~~~~~~-   82 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQ--G---AYDEVIK-   82 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTST--T---TTTTTTT-
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccch--h---hhhhhcc-
Confidence            469999999999999999999999999999999999887776665544443445555667788876  2   2222333 


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                       +.|+++|+|+....      ..+   ....++.|+.|+.++++++...   .+..+ +|++||..+..
T Consensus        83 -~~~~v~~~a~~~~~------~~~---~~~~~~~nv~gt~~ll~~~~~~---~~v~~-~i~~SS~~~~~  137 (342)
T d1y1pa1          83 -GAAGVAHIASVVSF------SNK---YDEVVTPAIGGTLNALRAAAAT---PSVKR-FVLTSSTVSAL  137 (342)
T ss_dssp             -TCSEEEECCCCCSC------CSC---HHHHHHHHHHHHHHHHHHHHTC---TTCCE-EEEECCGGGTC
T ss_pred             -cchhhhhhcccccc------ccc---ccccccchhhhHHHHHHhhhcc---ccccc-ccccccceeec
Confidence             35599999875432      112   2456788999999999987542   23455 99999976544

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=1.3e-13  Score=110.48  Aligned_cols=130  Identities=17%  Similarity=0.194  Sum_probs=90.8

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh-HHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK-LKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      |+|+||||+|-||+.++++|+++|++|+++++.... .......-..  ....+.++.+|+.|.  +.++.+.+..   .
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~--~~l~~~~~~~---~   74 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVL--TKHHIPFYEVDLCDR--KGLEKVFKEY---K   74 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHH--HTSCCCEEECCTTCH--HHHHHHHHHS---C
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhh--cccCCeEEEeecCCH--HHHHHHHhcc---C
Confidence            789999999999999999999999999999864321 2221111111  134567788999986  4444444433   4


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      +|+++|+|+.....      ...+....+.++|+.|+.++.+++..    .+..+ +|++||...+...
T Consensus        75 ~d~VihlAa~~~~~------~~~~~~~~~~~~N~~~t~~ll~~~~~----~~i~~-~i~~SS~~vyg~~  132 (347)
T d1z45a2          75 IDSVIHFAGLKAVG------ESTQIPLRYYHNNILGTVVLLELMQQ----YNVSK-FVFSSSATVYGDA  132 (347)
T ss_dssp             CCEEEECCSCCCHH------HHHHSHHHHHHHHHHHHHHHHHHHHH----HTCCE-EEEEEEGGGGCCG
T ss_pred             CCEEEEcccccccc------ccccCcccccccchhhhHHHHHHHHh----cccce-EEeecceeeecCc
Confidence            67999999866421      12233467788999999999999743    34455 9999997766543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.43  E-value=5.4e-13  Score=108.54  Aligned_cols=133  Identities=17%  Similarity=0.132  Sum_probs=91.9

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC----------------hhhHHHHHHHHHHhcCCceEEEEEEecCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN----------------PDKLKDVSDSIQAKYAKTQIKSVVVDFSGD  116 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~----------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (206)
                      |++|+||||+|-||.+++++|+++|++|+++|.-                .....+........ .+..+.++.+|++|.
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~Dl~d~   79 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL-TGKSIELYVGDICDF   79 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH-HCCCCEEEESCTTSH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhh-cCCCcEEEEccCCCH
Confidence            6889999999999999999999999999998721                11122222223222 245678899999987


Q ss_pred             chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccc
Q 028656          117 LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE  196 (206)
Q Consensus       117 ~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~  196 (206)
                        +.++.+.+..   ++|+++|.|+.....   ....+.+....++++|+.|+.++++++..    .+....+++.||..
T Consensus        80 --~~l~~~~~~~---~~d~ViHlAa~~~~~---~s~~~~~~~~~~~~~Nv~gt~nll~~~~~----~~~~~~~i~~ss~~  147 (393)
T d1i24a_          80 --EFLAESFKSF---EPDSVVHFGEQRSAP---YSMIDRSRAVYTQHNNVIGTLNVLFAIKE----FGEECHLVKLGTMG  147 (393)
T ss_dssp             --HHHHHHHHHH---CCSEEEECCSCCCHH---HHTSCHHHHHHHHHHHHHHHHHHHHHHHH----HCTTCEEEEECCGG
T ss_pred             --HHHHHHHHhh---cchheeccccccccc---cccccccccccccccccccccHHHHHHHH----hccccceeeccccc
Confidence              4444444433   567999999876432   23445666788899999999999998753    33344366666655


Q ss_pred             cc
Q 028656          197 LM  198 (206)
Q Consensus       197 ~~  198 (206)
                      ..
T Consensus       148 ~~  149 (393)
T d1i24a_         148 EY  149 (393)
T ss_dssp             GG
T ss_pred             cc
Confidence            43

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=99.43  E-value=4.5e-13  Score=106.19  Aligned_cols=129  Identities=15%  Similarity=0.074  Sum_probs=88.2

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh-hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP-DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      +|+||||+|-||+.++++|.++|++|+++++-. ....+-.+.+.   ....+.++.+|+.+.  +.++++.+..   .+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~---~~~~~~~i~~Di~~~--~~l~~~~~~~---~~   73 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS---SLGNFEFVHGDIRNK--NDVTRLITKY---MP   73 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH---TTCCCEEEECCTTCH--HHHHHHHHHH---CC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhh---ccCCcEEEEcccCCH--HHHHHHHHhc---CC
Confidence            589999999999999999999999999987532 22222222222   245678889999986  4444443333   46


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      |++||+|+.....      ...++....+++|+.|+.++++++..    .+..+ .++.||..+..+.+
T Consensus        74 d~Vih~aa~~~~~------~~~~~~~~~~~~Nv~gt~nll~~~~~----~~~~~-~i~~sS~~~~~~~~  131 (338)
T d1orra_          74 DSCFHLAGQVAMT------TSIDNPCMDFEINVGGTLNLLEAVRQ----YNSNC-NIIYSSTNKVYGDL  131 (338)
T ss_dssp             SEEEECCCCCCHH------HHHHCHHHHHHHHHHHHHHHHHHHHH----HCTTC-EEEEEEEGGGGTTC
T ss_pred             ceEEeeccccccc------ccccChHHHHHHHHHHHHHHHHhhhc----ccccc-cccccccccccccc
Confidence            7999999875431      12334578899999999999998654    34555 66666655554443

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=99.42  E-value=1.8e-13  Score=109.71  Aligned_cols=130  Identities=13%  Similarity=0.100  Sum_probs=91.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .+||+++||||+|-||..++++|.++|++|..++|+.+......+..+   ....+..+.+|++|.  +.+.++.+.   
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~---~~~~i~~~~~Dl~d~--~~l~~~~~~---   77 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR---VADGMQSEIGDIRDQ--NKLLESIRE---   77 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT---TTTTSEEEECCTTCH--HHHHHHHHH---
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhh---cccCCeEEEeeccCh--Hhhhhhhhh---
Confidence            469999999999999999999999999999999998765443333222   134577889999986  444443333   


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                      .++|+++|.|+....      ..+.+..+..+++|+.|+..+++++..    .+....++..||....
T Consensus        78 ~~~~~v~~~aa~~~~------~~~~~~~~~~~~~Nv~g~~n~l~~~~~----~~~~~~~~~~s~~~~~  135 (356)
T d1rkxa_          78 FQPEIVFHMAAQPLV------RLSYSEPVETYSTNVMGTVYLLEAIRH----VGGVKAVVNITSDKCY  135 (356)
T ss_dssp             HCCSEEEECCSCCCH------HHHHHCHHHHHHHHTHHHHHHHHHHHH----HCCCCEEEEECCGGGB
T ss_pred             chhhhhhhhhccccc------cccccCCccccccccccchhhhhhhhc----cccccccccccccccc
Confidence            346699999886532      223444577899999999999999754    2233325555554433

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1e-12  Score=105.06  Aligned_cols=132  Identities=14%  Similarity=0.142  Sum_probs=91.2

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC------hhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN------PDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      |+|+||||+|-||.+++++|+++|++|+.+++.      .....+..+.+... .+.++.++.+|++|.  +.+   .+.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~--~~l---~~~   76 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL-TGRSVEFEEMDILDQ--GAL---QRL   76 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHH-HTCCCEEEECCTTCH--HHH---HHH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHh-cCCCcEEEEeecccc--ccc---ccc
Confidence            678999999999999999999999999999752      11111222222221 245678899999986  333   333


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      ....++++++|.|+.....      .+.++..+.+++|+.|+..+.+++.    +.+..+ ++++||...+...+
T Consensus        77 ~~~~~~~~i~h~Aa~~~~~------~~~~~p~~~~~~Nv~gt~~l~~~~~----~~~v~~-~i~~ss~~~~~~~~  140 (346)
T d1ek6a_          77 FKKYSFMAVIHFAGLKAVG------ESVQKPLDYYRVNLTGTIQLLEIMK----AHGVKN-LVFSSSATVYGNPQ  140 (346)
T ss_dssp             HHHCCEEEEEECCSCCCHH------HHHHCHHHHHHHHHHHHHHHHHHHH----HTTCCE-EEEEEEGGGGCSCS
T ss_pred             ccccccccccccccccCcH------hhHhCHHHHHHhhhcccccccchhh----hcCccc-ccccccceeeeccc
Confidence            3334677899999875431      2233346778999999999998863    345556 99998876655443

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=8.7e-13  Score=98.21  Aligned_cols=117  Identities=17%  Similarity=0.188  Sum_probs=82.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      ..|+++||||+|++|++++++|+++|++|.++.|+++++...        ....+.++.+|+.|.     +.+.+.+.+.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~--------~~~~~~~~~gD~~d~-----~~l~~al~~~   68 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE--------GPRPAHVVVGDVLQA-----ADVDKTVAGQ   68 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS--------SCCCSEEEESCTTSH-----HHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc--------cccccccccccccch-----hhHHHHhcCC
Confidence            357899999999999999999999999999999998775321        134467789999986     4455556654


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                        |++|+++|...+..    .         .+++..++.+++++    +++.+..+ +|++||.......
T Consensus        69 --d~vi~~~g~~~~~~----~---------~~~~~~~~~~l~~a----a~~~~v~r-~i~~ss~~~~~~~  118 (205)
T d1hdoa_          69 --DAVIVLLGTRNDLS----P---------TTVMSEGARNIVAA----MKAHGVDK-VVACTSAFLLWDP  118 (205)
T ss_dssp             --SEEEECCCCTTCCS----C---------CCHHHHHHHHHHHH----HHHHTCCE-EEEECCGGGTSCT
T ss_pred             --CEEEEEeccCCchh----h---------hhhhHHHHHHHHHH----HHhcCCCe-EEEEeeeeccCCC
Confidence              49999998653311    1         12333444444444    55566677 9999997655443

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.36  E-value=1.1e-12  Score=104.32  Aligned_cols=132  Identities=17%  Similarity=0.174  Sum_probs=86.9

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh-----hHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD-----KLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      |+++||||+|-||++++++|+++|++|+.++|..+     +...+....... ....+.+..+|+++.  +.+....+. 
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Di~~~--~~~~~~~~~-   77 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNV-NKALMKLHYADLTDA--SSLRRWIDV-   77 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCH--HHHHHHHHH-
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhc-cccceEEEEccccCH--HHHHHHHhh-
Confidence            78999999999999999999999999999998532     222222211111 245677888899876  333333332 


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAEL  197 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~  197 (206)
                        .++|+++|+|+....      ..+.++....+++|..++..+..++.....+.....+++..||...
T Consensus        78 --~~~D~Vih~Aa~~~~------~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~  138 (339)
T d1n7ha_          78 --IKPDEVYNLAAQSHV------AVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEM  138 (339)
T ss_dssp             --HCCSEEEECCSCCCH------HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGG
T ss_pred             --hccchhhhccccccc------cccccCccccccccccccchhhhhhhhcccccccceeeeeccccee
Confidence              246699999987543      1233445678899999999999988765444433332555555443

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.34  E-value=1.5e-12  Score=102.77  Aligned_cols=126  Identities=17%  Similarity=0.023  Sum_probs=85.5

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      |+|+||||+|.||+.++++|+++|++|+.++|..+...  .+.++....+..+.++.+|+.|.  +.........   ++
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~--~~~l~~~~~~~~~~~~~~Dl~d~--~~~~~~~~~~---~~   73 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDT--RWRLRELGIEGDIQYEDGDMADA--CSVQRAVIKA---QP   73 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCC--CHHHHHTTCGGGEEEEECCTTCH--HHHHHHHHHH---CC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCccc--HHHHHHhcccCCcEEEEccccCh--HHhhhhhccc---cc
Confidence            68999999999999999999999999999998753311  11222222356788999999986  4444444433   34


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE  196 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~  196 (206)
                      ++++++|+.....      ...++..+.++.|+.|+.++++++..    .+....+++.||..
T Consensus        74 ~~~~~~a~~~~~~------~~~~~~~~~~~~n~~g~~~~l~~~~~----~~~~~~~i~~Ss~~  126 (321)
T d1rpna_          74 QEVYNLAAQSFVG------ASWNQPVTTGVVDGLGVTHLLEAIRQ----FSPETRFYQASTSE  126 (321)
T ss_dssp             SEEEECCSCCCHH------HHTTSHHHHHHHHTHHHHHHHHHHHH----HCTTSEEEEEEEGG
T ss_pred             ccccccccccccc------ccccchHHHHhhhhhchHHHHHHHHH----hCCCcccccccchh
Confidence            4777877654321      12223467899999999999998744    34444255555543

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.4e-12  Score=104.09  Aligned_cols=132  Identities=20%  Similarity=0.154  Sum_probs=87.2

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh-----hHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD-----KLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      |+++||||+|-||.+++++|.++|++|+.++|..+     +++......... ....+.++.+|++|.  +....+.+..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~--~~~~~~~~~~   78 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAH-IEGNMKLHYGDLTDS--TCLVKIINEV   78 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC----------CEEEEECCTTCH--HHHHHHHHHH
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhh-ccCCcEEEEeecCCc--hhhHHHHhhc
Confidence            44599999999999999999999999999999642     222221221111 235678999999987  4455555443


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                         +++++++.++....      ..+.+.....+++|+.|+.++..++...-. .+..+ +|++||.+.+.
T Consensus        79 ---~~~~v~~~~a~~~~------~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~-~~~~~-~i~~SS~~vyg  138 (347)
T d1t2aa_          79 ---KPTEIYNLGAQSHV------KISFDLAEYTADVDGVGTLRLLDAVKTCGL-INSVK-FYQASTSELYG  138 (347)
T ss_dssp             ---CCSEEEECCSCCCH------HHHHHSHHHHHHHHTHHHHHHHHHHHHTTC-TTTCE-EEEEEEGGGTC
T ss_pred             ---ccceeeeeeecccc------chhhccchhhhhhHHHHHHHHHHHHHHcCC-CCCcE-EEEecchheec
Confidence               35578888875532      122334456789999999999988755321 22235 99999976543

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.32  E-value=5.4e-13  Score=107.63  Aligned_cols=133  Identities=14%  Similarity=0.077  Sum_probs=89.5

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      .|+||||+|-||++++++|+++|+++++..++...... .+.+........+.+..+|++|.  +.++.+.+..   ++|
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~--~~l~~~~~~~---~~d   75 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGN-LESLSDISESNRYNFEHADICDS--AEITRIFEQY---QPD   75 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCC-GGGGTTTTTCTTEEEEECCTTCH--HHHHHHHHHH---CCS
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcccc-HHHHHhhhhcCCcEEEEccCCCH--HHHHHHHHhC---CCC
Confidence            58999999999999999999999986554332211000 01122222355788899999987  4444444433   466


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC-----CCCceEEEecccccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR-----KKGLSMLNIGKAELMCS  200 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-----~~g~~iv~isS~~~~~~  200 (206)
                      +++|+|+....      ..+.++..+.+++|+.|+..+.+++.......     +..+ +|++||...+..
T Consensus        76 ~VihlAa~~~~------~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~-~i~~SS~~vyg~  139 (361)
T d1kewa_          76 AVMHLAAESHV------DRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFR-FHHISTDEVYGD  139 (361)
T ss_dssp             EEEECCSCCCH------HHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCE-EEEEEEGGGGCC
T ss_pred             EEEECccccch------hhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceE-EEEeccceeeCC
Confidence            99999986542      11233446789999999999999987754321     2345 999999776643

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.27  E-value=2.1e-11  Score=97.05  Aligned_cols=135  Identities=16%  Similarity=0.091  Sum_probs=91.6

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh----hHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD----KLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERI  124 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  124 (206)
                      ...+-|++|||||+|.||.+++++|.++|++|+.++|...    ..+......... ....+.++.+|..|.     ...
T Consensus        12 ~~~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~d~-----~~~   85 (341)
T d1sb8a_          12 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEK-QWSNFKFIQGDIRNL-----DDC   85 (341)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHH-HHTTEEEEECCTTSH-----HHH
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhc-ccCCeeEEeeccccc-----ccc
Confidence            3455789999999999999999999999999999987332    222222211111 123567788888865     223


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      ......  ++.+++.++....      ..+.++....+++|+.|+..+.+++..    .+..+ +|++||...+...+
T Consensus        86 ~~~~~~--~~~v~~~~a~~~~------~~~~~~~~~~~~~Nv~gt~~ll~~~~~----~~~~~-~i~~SS~~vyg~~~  150 (341)
T d1sb8a_          86 NNACAG--VDYVLHQAALGSV------PRSINDPITSNATNIDGFLNMLIAARD----AKVQS-FTYAASSSTYGDHP  150 (341)
T ss_dssp             HHHHTT--CSEEEECCSCCCH------HHHHHCHHHHHHHHTHHHHHHHHHHHH----TTCSE-EEEEEEGGGGTTCC
T ss_pred             cccccc--ccccccccccccc------cccccCccchhheeehhHHHHHHHHHh----cCCce-EEEcccceeeCCCC
Confidence            333333  4478887765432      123455677899999999999998754    44456 99999988765443

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.3e-12  Score=97.71  Aligned_cols=130  Identities=17%  Similarity=0.237  Sum_probs=91.6

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERI  124 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  124 (206)
                      ++++.++|+++||||+|.+|++++++|.++|.  +|.+++|++......        ....+....+|..+.     +.+
T Consensus         8 ~~~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~--------~~~~i~~~~~D~~~~-----~~~   74 (232)
T d2bkaa1           8 EDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE--------AYKNVNQEVVDFEKL-----DDY   74 (232)
T ss_dssp             HHHHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG--------GGGGCEEEECCGGGG-----GGG
T ss_pred             HHhCCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc--------ccceeeeeeeccccc-----ccc
Confidence            35667789999999999999999999999985  899999976442210        122345555666543     344


Q ss_pred             HHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          125 KEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       125 ~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                      .+.+.+  .|+++|++|....         ........++|+.++..+++++..    .+..+ +|++||..+....++.
T Consensus        75 ~~~~~~--~d~vi~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~a~~----~~v~~-fi~~Ss~~~~~~~~~~  138 (232)
T d2bkaa1          75 ASAFQG--HDVGFCCLGTTRG---------KAGAEGFVRVDRDYVLKSAELAKA----GGCKH-FNLLSSKGADKSSNFL  138 (232)
T ss_dssp             GGGGSS--CSEEEECCCCCHH---------HHHHHHHHHHHTHHHHHHHHHHHH----TTCCE-EEEECCTTCCTTCSSH
T ss_pred             cccccc--ccccccccccccc---------ccchhhhhhhcccccceeeecccc----cCccc-cccCCccccccCccch
Confidence            455555  4599999985421         123356678899999999888743    45555 9999998877665554


Q ss_pred             C
Q 028656          205 Y  205 (206)
Q Consensus       205 y  205 (206)
                      |
T Consensus       139 Y  139 (232)
T d2bkaa1         139 Y  139 (232)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=2.3e-11  Score=96.80  Aligned_cols=123  Identities=14%  Similarity=0.129  Sum_probs=86.3

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      +++||||+|-||+.++++|+++|+ +|+.+++..+...+..       ...++.++.+|+++.. +..+.+.   .  ++
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~-------~~~~~~~i~~Di~~~~-~~~~~~~---~--~~   68 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-------NHPHFHFVEGDISIHS-EWIEYHV---K--KC   68 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-------TCTTEEEEECCTTTCS-HHHHHHH---H--HC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhc-------cCCCeEEEECccCChH-HHHHHHH---h--CC
Confidence            489999999999999999999994 8999988655433221       2456889999998762 2222221   2  35


Q ss_pred             cEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          134 GVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       134 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      |+++|+|+......      ..++..+.+++|+.|+.++.+++..    . +.+ .++.||...+...+
T Consensus        69 d~Vih~a~~~~~~~------~~~~~~~~~~~nv~gt~~ll~~~~~----~-~~~-~~~~ss~~~~~~~~  125 (342)
T d2blla1          69 DVVLPLVAIATPIE------YTRNPLRVFELDFEENLRIIRYCVK----Y-RKR-IIFPSTSEVYGMCS  125 (342)
T ss_dssp             SEEEECBCCCCHHH------HHHSHHHHHHHHTHHHHHHHHHHHH----T-TCE-EEEECCGGGGBTCC
T ss_pred             Cccccccccccccc------cccCCcccccccccccccccccccc----c-ccc-cccccccccccccc
Confidence            59999999765321      2233467899999999999999743    2 234 77777766655543

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.3e-11  Score=97.49  Aligned_cols=118  Identities=15%  Similarity=0.135  Sum_probs=79.8

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh-hHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD-KLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      |+++||||+|-||++++++|+++|++|+.++|... +.+..    ........+...+.|..+..          +  .+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~----------~--~~   65 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNV----EHWIGHENFELINHDVVEPL----------Y--IE   65 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGT----GGGTTCTTEEEEECCTTSCC----------C--CC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHH----HHhcCCCceEEEehHHHHHH----------H--cC
Confidence            78999999999999999999999999999987432 11111    11112334555555554331          1  15


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      +|+++|+|+......      ..++..+.+++|+.|+.++++++..    .+ .+ +|++||.+.+.
T Consensus        66 ~d~VihlAa~~~~~~------~~~~~~~~~~~Nv~g~~~ll~~~~~----~~-~k-~I~~SS~~vy~  120 (312)
T d2b69a1          66 VDQIYHLASPASPPN------YMYNPIKTLKTNTIGTLNMLGLAKR----VG-AR-LLLASTSEVYG  120 (312)
T ss_dssp             CSEEEECCSCCSHHH------HTTCHHHHHHHHHHHHHHHHHHHHH----HT-CE-EEEEEEGGGGB
T ss_pred             CCEEEECcccCCchh------HHhCHHHHHHHHHHHHHHHHHHHHH----cC-Cc-EEEEEChheec
Confidence            779999998654311      1123467789999999999998643    33 35 99999976654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=3e-11  Score=95.00  Aligned_cols=112  Identities=10%  Similarity=0.118  Sum_probs=79.4

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      .|+|+||||+|-||++++++|+++|+.++++++..+                      +|+.+.  +.++.+.+.   .+
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~----------------------~~~~~~--~~~~~~~~~---~~   54 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE----------------------LNLLDS--RAVHDFFAS---ER   54 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT----------------------CCTTCH--HHHHHHHHH---HC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh----------------------ccccCH--HHHHHHHhh---cC
Confidence            467999999999999999999999998887654321                      356654  444444432   24


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      +|.++|+|+.....     .....+..+.+++|+.|+.++++++..    .+..+ +|++||.+.+.+.
T Consensus        55 ~d~v~~~a~~~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~~a~~----~~v~~-~i~~SS~~vyg~~  113 (315)
T d1e6ua_          55 IDQVYLAAAKVGGI-----VANNTYPADFIYQNMMIESNIIHAAHQ----NDVNK-LLFLGSSCIYPKL  113 (315)
T ss_dssp             CSEEEECCCCCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHH----TTCCE-EEEECCGGGSCTT
T ss_pred             CCEEEEcchhcccc-----ccchhhHHHHHHHHHHHHHHHHHHHHH----cCCCE-EEEECCceEcCCC
Confidence            66999998765421     112333466788999999999998744    34456 9999998876543

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.13  E-value=4e-10  Score=90.92  Aligned_cols=133  Identities=17%  Similarity=0.159  Sum_probs=92.7

Q ss_pred             CcEEEEECCCChHHHHHHHHHHH-CCCcEEEEEc---------ChhhHHHHHHHHHHh------cCCceEEEEEEecCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAK-TGLNLVLVGR---------NPDKLKDVSDSIQAK------YAKTQIKSVVVDFSGD  116 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~-~g~~V~~~~r---------~~~~~~~~~~~~~~~------~~~~~~~~~~~d~~~~  116 (206)
                      +-.|+||||+|-||..++++|++ .|++|+++|+         ..+..++....+...      ..+....++.+|++|.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~   81 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence            44699999999999999999986 6899999874         123333433333321      1245677889999987


Q ss_pred             chHHHHHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccc
Q 028656          117 LDEGVERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAE  196 (206)
Q Consensus       117 ~~~~~~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~  196 (206)
                        +.++++.+..++  +|+++|.|+.....      ...+.....+++|+.++..+++++..    .+..+ ++++||..
T Consensus        82 --~~l~~~~~~~~~--~d~ViH~Aa~~~~~------~~~~~~~~~~~~N~~~t~~~l~~~~~----~~~~~-~~~~~s~~  146 (383)
T d1gy8a_          82 --DFLNGVFTRHGP--IDAVVHMCAFLAVG------ESVRDPLKYYDNNVVGILRLLQAMLL----HKCDK-IIFSSSAA  146 (383)
T ss_dssp             --HHHHHHHHHSCC--CCEEEECCCCCCHH------HHHHCHHHHHHHHHHHHHHHHHHHHH----TTCCE-EEEEEEGG
T ss_pred             --HHhhhhhhccce--eehhhccccccccc------ccccccccccccccccccccchhhhc----cCCcc-cccccccc
Confidence              666666666654  45999999876432      12233466789999999999988753    44455 88777766


Q ss_pred             cccc
Q 028656          197 LMCS  200 (206)
Q Consensus       197 ~~~~  200 (206)
                      ....
T Consensus       147 ~~~~  150 (383)
T d1gy8a_         147 IFGN  150 (383)
T ss_dssp             GTBS
T ss_pred             cccc
Confidence            5543

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.11  E-value=2e-10  Score=92.04  Aligned_cols=130  Identities=13%  Similarity=-0.004  Sum_probs=88.6

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHH
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKE  126 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  126 (206)
                      +-+..++..|+||||+|-||.+++++|.++|++|+.+++......      .......  .+..+|+.+.     +.+.+
T Consensus         9 ~~~~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~------~~~~~~~--~~~~~D~~~~-----~~~~~   75 (363)
T d2c5aa1           9 QYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM------TEDMFCD--EFHLVDLRVM-----ENCLK   75 (363)
T ss_dssp             CSCTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSS------CGGGTCS--EEEECCTTSH-----HHHHH
T ss_pred             CcCCCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccch------hhhcccC--cEEEeechhH-----HHHHH
Confidence            334556788999999999999999999999999999987543210      0000122  3455676654     33344


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      ...+  +|.++|.|+......     ...+.....+++|+.++..++.++..    .+..+ +|++||...+...
T Consensus        76 ~~~~--~d~Vih~a~~~~~~~-----~~~~~~~~~~~~n~~gt~~ll~~~~~----~~vk~-~i~~SS~~~~~~~  138 (363)
T d2c5aa1          76 VTEG--VDHVFNLAADMGGMG-----FIQSNHSVIMYNNTMISFNMIEAARI----NGIKR-FFYASSACIYPEF  138 (363)
T ss_dssp             HHTT--CSEEEECCCCCCCHH-----HHTTCHHHHHHHHHHHHHHHHHHHHH----TTCSE-EEEEEEGGGSCGG
T ss_pred             Hhhc--CCeEeeccccccccc-----ccccccccccccccchhhHHHHhHHh----hCccc-ccccccccccccc
Confidence            4444  559999998765321     12233467789999999999998744    45556 9999997766544

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.05  E-value=9.9e-11  Score=93.32  Aligned_cols=128  Identities=14%  Similarity=0.089  Sum_probs=82.7

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      -|.|+||||+|-||..++++|.++|++|.++.++...-......+. ...+..+.++.+|+.|.     +.+.+.+...+
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~-~~~~~~i~~~~~Di~d~-----~~~~~~~~~~~   75 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLE-AILGDRVELVVGDIADA-----ELVDKLAAKAD   75 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTG-GGCSSSEEEEECCTTCH-----HHHHHHHTTCS
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHH-HhhcCCeEEEEccCCCH-----HHHHHHHhhhh
Confidence            3679999999999999999999999876655543100000000011 11345788899999875     33333344434


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCS  200 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~  200 (206)
                        .++|.|+......      ..++..+.+++|+.|+.+++.++...    + .+ +|++||.+.+..
T Consensus        76 --~v~~~a~~~~~~~------~~~~~~~~~~~N~~g~~nll~~~~~~----~-~k-~i~~ss~~vyg~  129 (346)
T d1oc2a_          76 --AIVHYAAESHNDN------SLNDPSPFIHTNFIGTYTLLEAARKY----D-IR-FHHVSTDEVYGD  129 (346)
T ss_dssp             --EEEECCSCCCHHH------HHHCCHHHHHHHTHHHHHHHHHHHHH----T-CE-EEEEEEGGGGCC
T ss_pred             --hhhhhhhcccccc------hhhCcccceeeehHhHHhhhhhhccc----c-cc-ccccccceEecc
Confidence              7888887654321      12234677899999999999887442    2 34 888888766543

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.00  E-value=7.3e-10  Score=82.81  Aligned_cols=124  Identities=14%  Similarity=0.047  Sum_probs=81.5

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCc--EEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLN--LVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      ++|+||||+|.||++++++|+++|++  |+...|++++.+..         ...+..+.+|..+.     +...+.+.+ 
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~---------~~~~~~~~~d~~~~-----~~~~~~~~~-   68 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI---------GGEADVFIGDITDA-----DSINPAFQG-   68 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT---------TCCTTEEECCTTSH-----HHHHHHHTT-
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc---------cCCcEEEEeeeccc-----ccccccccc-
Confidence            58999999999999999999999976  55567877654321         33456788888876     344444554 


Q ss_pred             CccEEEEeccccCCccc-------ccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccc
Q 028656          132 DVGVLINNVGISYPYAR-------FFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELM  198 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~-------~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~  198 (206)
                       +|.++|+|+.......       ...............+|+.|+..+......    ...+. ....|+....
T Consensus        69 -~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~s~~~~~  136 (252)
T d2q46a1          69 -IDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKV----AGVKH-IVVVGSMGGT  136 (252)
T ss_dssp             -CSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHH----HTCSE-EEEEEETTTT
T ss_pred             -ceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccc----ccccc-cccccccccC
Confidence             4599999987542110       011122233455678899998888777644    33454 6666665443

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.95  E-value=4.2e-10  Score=88.75  Aligned_cols=128  Identities=17%  Similarity=0.153  Sum_probs=84.0

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEE------EEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVL------VGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      +++||||+|-||+.++++|+++|++|..      .++......  ...+........+.++..|..+.     .......
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~   74 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGN--RANLAPVDADPRLRFVHGDIRDA-----GLLAREL   74 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCC--GGGGGGGTTCTTEEEEECCTTCH-----HHHHHHT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCcccc--HhHhhhhhcCCCeEEEEeccccc-----hhhhccc
Confidence            4899999999999999999999986543      332210000  00111111356788899998875     2222233


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecccccccccc
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVR  202 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~  202 (206)
                      .  ++|.++|.|+.....      ...+...+.+++|+.|+..+.+++..    .+..+ +|++||.+.+.+.+
T Consensus        75 ~--~~d~vi~~a~~~~~~------~~~~~~~~~~~~N~~gt~~ll~~~~~----~~~~~-~I~~Ss~~~yg~~~  135 (322)
T d1r6da_          75 R--GVDAIVHFAAESHVD------RSIAGASVFTETNVQGTQTLLQCAVD----AGVGR-VVHVSTNQVYGSID  135 (322)
T ss_dssp             T--TCCEEEECCSCCCHH------HHHHCCHHHHHHHTHHHHHHHHHHHH----TTCCE-EEEEEEGGGGCCCS
T ss_pred             c--ccceEEeeccccccc------ccccchHHHhhhhHHHHHHHHHHHHH----cCCce-EEEeecceeecCCC
Confidence            3  466999999765431      22333466789999999999998753    44555 99999987765543

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=98.92  E-value=4.7e-10  Score=86.73  Aligned_cols=108  Identities=16%  Similarity=0.152  Sum_probs=72.0

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      .++||||+|-||.+++++|.++|.. +.++++...                   ...|++|.  +.++++.+   +.++|
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~~-v~~~~~~~~-------------------~~~Dl~~~--~~~~~~i~---~~~~D   56 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGNL-IALDVHSKE-------------------FCGDFSNP--KGVAETVR---KLRPD   56 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSEE-EEECTTCSS-------------------SCCCTTCH--HHHHHHHH---HHCCS
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCE-EEEECCCcc-------------------ccCcCCCH--HHHHHHHH---HcCCC
Confidence            4899999999999999999999864 444443321                   22477665  33444333   33577


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMC  199 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~  199 (206)
                      ++||+||......      +.+.-+..+++|+.++..+.+++..     ...+ ++++||...+.
T Consensus        57 ~Vih~Aa~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~-----~~~~-~~~~ss~~~~~  109 (298)
T d1n2sa_          57 VIVNAAAHTAVDK------AESEPELAQLLNATSVEAIAKAANE-----TGAW-VVHYSTDYVFP  109 (298)
T ss_dssp             EEEECCCCCCHHH------HTTCHHHHHHHHTHHHHHHHHHHTT-----TTCE-EEEEEEGGGSC
T ss_pred             EEEEecccccccc------cccCccccccccccccccchhhhhc-----cccc-ccccccccccc
Confidence            9999999764321      1122356789999999999888632     2334 78887765443

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.88  E-value=9.2e-10  Score=81.64  Aligned_cols=118  Identities=10%  Similarity=0.084  Sum_probs=77.1

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      -|+++||||+|.||++++++|.++|+  +|+...|++..            ...++   ..+..|.     ..+.+....
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~------------~~~~~---~~~~~d~-----~~~~~~~~~   61 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------------EHPRL---DNPVGPL-----AELLPQLDG   61 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------------CCTTE---ECCBSCH-----HHHGGGCCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh------------hcccc---cccccch-----hhhhhcccc
Confidence            37899999999999999999999997  56666765422            11222   2222221     222333322


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccccCC
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSVRFH  204 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~  204 (206)
                       .+|.+++++|......     ..   -+...++|+.++..+++++.    +.+..+ ++++||..+.......
T Consensus        62 -~~d~vi~~~g~~~~~~-----~~---~~~~~~~~~~~~~~~~~~a~----~~~v~~-~i~~Ss~~~~~~~~~~  121 (212)
T d2a35a1          62 -SIDTAFCCLGTTIKEA-----GS---EEAFRAVDFDLPLAVGKRAL----EMGARH-YLVVSALGADAKSSIF  121 (212)
T ss_dssp             -CCSEEEECCCCCHHHH-----SS---HHHHHHHHTHHHHHHHHHHH----HTTCCE-EEEECCTTCCTTCSSH
T ss_pred             -chheeeeeeeeecccc-----cc---ccccccchhhhhhhcccccc----cccccc-cccccccccccccccc
Confidence             4679999998653211     11   25678889999999988863    345555 9999997766554433

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.85  E-value=2.6e-09  Score=82.01  Aligned_cols=103  Identities=16%  Similarity=0.172  Sum_probs=70.7

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      .++||||+|.||.+++++|.++|++|+.++|+.                       +|+.|.  +.++++.+.   .++|
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~-----------------------~D~~d~--~~~~~~l~~---~~~d   54 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD-----------------------LDITNV--LAVNKFFNE---KKPN   54 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT-----------------------CCTTCH--HHHHHHHHH---HCCS
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh-----------------------ccCCCH--HHHHHHHHH---cCCC
Confidence            489999999999999999999999999998853                       366665  334444333   3567


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAEL  197 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~  197 (206)
                      +++|+|+.....      ......+...+.|......+.......     ... +++.||...
T Consensus        55 ~vih~a~~~~~~------~~~~~~~~~~~~n~~~~~~~~~~~~~~-----~~~-~~~~ss~~v  105 (281)
T d1vl0a_          55 VVINCAAHTAVD------KCEEQYDLAYKINAIGPKNLAAAAYSV-----GAE-IVQISTDYV  105 (281)
T ss_dssp             EEEECCCCCCHH------HHHHCHHHHHHHHTHHHHHHHHHHHHH-----TCE-EEEEEEGGG
T ss_pred             EEEeeccccccc------cccccchhhcccccccccccccccccc-----ccc-cccccccee
Confidence            999998865431      122334566778888887777665431     233 666666543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=98.82  E-value=1.2e-08  Score=78.97  Aligned_cols=81  Identities=20%  Similarity=0.194  Sum_probs=55.9

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHH-HHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK-DVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      ++|+||||+|.||++++++|.++|++|+++.|+..... ...+.+... .+..+..+.+|+.+.     +.+.+.+.+.+
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~v~~v~~d~~d~-----~~~~~~~~~~~   77 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYF-KQLGAKLIEASLDDH-----QRLVDALKQVD   77 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHH-HTTTCEEECCCSSCH-----HHHHHHHTTCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhh-ccCCcEEEEeecccc-----hhhhhhccCcc
Confidence            34999999999999999999999999999999753211 111111111 234467788898876     44445555544


Q ss_pred             ccEEEEeccc
Q 028656          133 VGVLINNVGI  142 (206)
Q Consensus       133 id~lvnnAg~  142 (206)
                        .++++++.
T Consensus        78 --~~~~~~~~   85 (312)
T d1qyda_          78 --VVISALAG   85 (312)
T ss_dssp             --EEEECCCC
T ss_pred             --hhhhhhhh
Confidence              78887764

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=98.76  E-value=1.2e-07  Score=74.99  Aligned_cols=77  Identities=17%  Similarity=0.127  Sum_probs=55.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      +.|+++||||+|.||.+++++|+++|++|+++.|+..+...  +.+..   ...+..+..|+.|..    +.+.+.+.+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~--~~~~~---~~~v~~~~gD~~d~~----~~~~~a~~~~   72 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EELQA---IPNVTLFQGPLLNNV----PLMDTLFEGA   72 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHHHT---STTEEEEESCCTTCH----HHHHHHHTTC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh--hhhcc---cCCCEEEEeeCCCcH----HHHHHHhcCC
Confidence            57899999999999999999999999999999998866432  22222   334677889998761    2233445554


Q ss_pred             CccEEEEe
Q 028656          132 DVGVLINN  139 (206)
Q Consensus       132 ~id~lvnn  139 (206)
                      +  .++.+
T Consensus        73 ~--~~~~~   78 (350)
T d1xgka_          73 H--LAFIN   78 (350)
T ss_dssp             S--EEEEC
T ss_pred             c--eEEee
Confidence            4  55544

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.60  E-value=5.2e-08  Score=70.40  Aligned_cols=52  Identities=23%  Similarity=0.346  Sum_probs=45.3

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceE
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQI  106 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~  106 (206)
                      ++.|+||+|++|+++|+.|++.|++|++.+|++++++++.+++....+....
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~   53 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASI   53 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCE
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceE
Confidence            4678888899999999999999999999999999999999998876544443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=9.5e-07  Score=63.07  Aligned_cols=79  Identities=16%  Similarity=0.265  Sum_probs=59.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++|+|+||+|++|...++.....|++|+.+++++++.+.++    +. +...+    .|..+.  +..+++.+..++.
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~----~~-Ga~~v----i~~~~~--~~~~~i~~~t~~~   96 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL----QN-GAHEV----FNHREV--NYIDKIKKYVGEK   96 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HT-TCSEE----EETTST--THHHHHHHHHCTT
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccccccccccc----cc-Ccccc----cccccc--cHHHHhhhhhccC
Confidence            5889999999999999999988889999999999877654432    22 22322    355554  5667787777776


Q ss_pred             CccEEEEecc
Q 028656          132 DVGVLINNVG  141 (206)
Q Consensus       132 ~id~lvnnAg  141 (206)
                      .+|+++.+.|
T Consensus        97 g~d~v~d~~g  106 (174)
T d1yb5a2          97 GIDIIIEMLA  106 (174)
T ss_dssp             CEEEEEESCH
T ss_pred             CceEEeeccc
Confidence            7889998876

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=98.42  E-value=2.1e-07  Score=71.27  Aligned_cols=83  Identities=22%  Similarity=0.254  Sum_probs=55.2

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhH--HHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKL--KDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|+++||||+|.||++++++|.++|++|++++|+....  .+..+.+... ....+..+.+|+.+.     ....+.+.+
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~-----~~~~~~~~~   76 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESF-KASGANIVHGSIDDH-----ASLVEAVKN   76 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHH-HTTTCEEECCCTTCH-----HHHHHHHHT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhh-ccCCcEEEEeecccc-----hhhhhhhhh
Confidence            46799999999999999999999999999999975432  1112222222 133356677787765     233333444


Q ss_pred             CCccEEEEecccc
Q 028656          131 LDVGVLINNVGIS  143 (206)
Q Consensus       131 ~~id~lvnnAg~~  143 (206)
                      .+  .++++++..
T Consensus        77 ~~--~vi~~~~~~   87 (307)
T d1qyca_          77 VD--VVISTVGSL   87 (307)
T ss_dssp             CS--EEEECCCGG
T ss_pred             ce--eeeeccccc
Confidence            34  788877643

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=1.3e-06  Score=62.56  Aligned_cols=80  Identities=21%  Similarity=0.243  Sum_probs=60.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|++++|+||++|+|...++-....|++|+.+++++++.+.+++    .+ ...+    +|-.++  +..+++.+..++.
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~----lG-a~~v----i~~~~~--d~~~~v~~~t~g~   96 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AG-AWQV----INYREE--DLVERLKEITGGK   96 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HT-CSEE----EETTTS--CHHHHHHHHTTTC
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh----cC-CeEE----EECCCC--CHHHHHHHHhCCC
Confidence            48899999999999999998888899999999999988765432    22 2222    355554  5667777776666


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      .+|+++++.|.
T Consensus        97 g~d~v~d~~g~  107 (179)
T d1qora2          97 KVRVVYDSVGR  107 (179)
T ss_dssp             CEEEEEECSCG
T ss_pred             CeEEEEeCccH
Confidence            78899888763

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=98.37  E-value=1.2e-06  Score=63.04  Aligned_cols=79  Identities=14%  Similarity=0.143  Sum_probs=56.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      +|++|+|+||+||+|...++-....|++|+.+++++++.+.++    +.+ ...+    +|-.++  ...+.+.+..++.
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~----~~G-a~~v----i~~~~~--~~~~~~~~~~~~~   97 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK----QIG-FDAA----FNYKTV--NSLEEALKKASPD   97 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTT-CSEE----EETTSC--SCHHHHHHHHCTT
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHH----hhh-hhhh----cccccc--cHHHHHHHHhhcC
Confidence            5899999999999999999988899999999999987754433    222 2222    233333  3345555555555


Q ss_pred             CccEEEEecc
Q 028656          132 DVGVLINNVG  141 (206)
Q Consensus       132 ~id~lvnnAg  141 (206)
                      .+|+++++.|
T Consensus        98 Gvd~v~D~vG  107 (182)
T d1v3va2          98 GYDCYFDNVG  107 (182)
T ss_dssp             CEEEEEESSC
T ss_pred             CCceeEEecC
Confidence            6889999876

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.30  E-value=1.8e-06  Score=61.87  Aligned_cols=79  Identities=18%  Similarity=0.199  Sum_probs=59.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      +|++++|+||+|++|...++.....|++|+++++++++.+.    +++.+ ...+    .|..++  +..+.+.+..++.
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~----l~~~G-a~~v----i~~~~~--~~~~~v~~~t~~~   93 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREM----LSRLG-VEYV----GDSRSV--DFADEILELTDGY   93 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHH----HHTTC-CSEE----EETTCS--THHHHHHHHTTTC
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccccc----ccccc-cccc----ccCCcc--CHHHHHHHHhCCC
Confidence            48899999999999999999888899999999998876543    33332 2221    344444  5667777777766


Q ss_pred             CccEEEEecc
Q 028656          132 DVGVLINNVG  141 (206)
Q Consensus       132 ~id~lvnnAg  141 (206)
                      .+|+++++.|
T Consensus        94 g~d~v~d~~g  103 (183)
T d1pqwa_          94 GVDVVLNSLA  103 (183)
T ss_dssp             CEEEEEECCC
T ss_pred             CEEEEEeccc
Confidence            7889999887

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=3.4e-06  Score=60.67  Aligned_cols=85  Identities=18%  Similarity=0.285  Sum_probs=59.8

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHH---HHHHhcCCceEEEEEEecCCCchHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSD---SIQAKYAKTQIKSVVVDFSGDLDEGVER  123 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~~~~~~~~~  123 (206)
                      ..++++|+++|.|+ ||.|++++..+.+.|. ++.+..|+.++.+++.+   ++....   .......|..+.     +.
T Consensus        13 ~~~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~-----~~   83 (182)
T d1vi2a1          13 GFDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENT---DCVVTVTDLADQ-----QA   83 (182)
T ss_dssp             TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS---SCEEEEEETTCH-----HH
T ss_pred             CCCcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhc---CcceEeeecccc-----cc
Confidence            45678999999999 5999999999999997 78899998876665443   444332   233445666654     34


Q ss_pred             HHHHhcCCCccEEEEecccc
Q 028656          124 IKEAIEGLDVGVLINNVGIS  143 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~  143 (206)
                      +.+...+  .|++||+..+.
T Consensus        84 ~~~~~~~--~diiIN~Tp~G  101 (182)
T d1vi2a1          84 FAEALAS--ADILTNGTKVG  101 (182)
T ss_dssp             HHHHHHT--CSEEEECSSTT
T ss_pred             hhhhhcc--cceeccccCCc
Confidence            4444554  45999997654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=98.24  E-value=4.2e-06  Score=59.23  Aligned_cols=82  Identities=27%  Similarity=0.338  Sum_probs=56.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC-chHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD-LDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~  130 (206)
                      .|.+++|+| +|++|...++.+...|++|+++++++++++.+++ +     +.... +..|..+. .++..+.+.+..++
T Consensus        26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~-~-----ga~~~-~~~~~~~~~~~~~~~~~~~~~g~   97 (170)
T d1e3ja2          26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN-C-----GADVT-LVVDPAKEEESSIIERIRSAIGD   97 (170)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-T-----TCSEE-EECCTTTSCHHHHHHHHHHHSSS
T ss_pred             CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHH-c-----CCcEE-Eeccccccccchhhhhhhccccc
Confidence            477899997 5799999998888899999999999988765433 2     22111 22333333 24445666666654


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                       .+|++|.++|.
T Consensus        98 -g~D~vid~~g~  108 (170)
T d1e3ja2          98 -LPNVTIDCSGN  108 (170)
T ss_dssp             -CCSEEEECSCC
T ss_pred             -CCceeeecCCC
Confidence             57799999873

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=7.4e-06  Score=62.55  Aligned_cols=121  Identities=20%  Similarity=0.206  Sum_probs=66.5

Q ss_pred             EEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCcc
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVG  134 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id  134 (206)
                      |+||||+|-||..++++|+++|. .|+++++-.... +.. .+..   .. +    +|..+. ++............+++
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~-~~~-~~~~---~~-~----~~~~~~-~~~~~~~~~~~~~~~~~   70 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT-KFV-NLVD---LN-I----ADYMDK-EDFLIQIMAGEEFGDVE   70 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGG-GGH-HHHT---SC-C----SEEEEH-HHHHHHHHTTCCCSSCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcc-hhh-cccc---cc-h----hhhccc-hHHHHHHhhhhcccchh
Confidence            79999999999999999999996 687776322111 100 1111   11 0    111111 12223332222222466


Q ss_pred             EEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEeccccccccc
Q 028656          135 VLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGKAELMCSV  201 (206)
Q Consensus       135 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS~~~~~~~  201 (206)
                      +++|.|+.....     ..+   .+...+.|+.++..+..++..    .+. + +++.||.....+.
T Consensus        71 ~i~~~aa~~~~~-----~~~---~~~~~~~~~~~~~~~l~~~~~----~~i-~-~v~~ss~~~~~~~  123 (307)
T d1eq2a_          71 AIFHEGACSSTT-----EWD---GKYMMDNNYQYSKELLHYCLE----REI-P-FLYASSAATYGGR  123 (307)
T ss_dssp             EEEECCSCCCTT-----CCC---HHHHHHHTHHHHHHHHHHHHH----HTC-C-EEEEEEGGGGTTC
T ss_pred             hhhhhccccccc-----ccc---ccccccccccccccccccccc----ccc-c-ccccccccccccc
Confidence            888888754321     112   245677888888888777543    222 3 6666665554443

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=98.12  E-value=6e-06  Score=59.61  Aligned_cols=87  Identities=21%  Similarity=0.273  Sum_probs=56.8

Q ss_pred             Cc-EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           53 GS-WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        53 ~k-~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      |+ +++++||+||+|.+.++-....|++|+.+.|+.++.++..+.+++.+.+. +...+.+...+..+.+.++.+..++ 
T Consensus        29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~-vi~~~~~~~~~~~~~v~~~~~~~g~-  106 (189)
T d1gu7a2          29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQ-VITEDQNNSREFGPTIKEWIKQSGG-  106 (189)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSE-EEEHHHHHCGGGHHHHHHHHHHHTC-
T ss_pred             CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccE-EEeccccchhHHHHHHHHHHhhccC-
Confidence            44 55557999999999888887889999999999888888777777764333 2111111111223334444444444 


Q ss_pred             CccEEEEecc
Q 028656          132 DVGVLINNVG  141 (206)
Q Consensus       132 ~id~lvnnAg  141 (206)
                      .+|+++++.|
T Consensus       107 ~vdvv~D~vg  116 (189)
T d1gu7a2         107 EAKLALNCVG  116 (189)
T ss_dssp             CEEEEEESSC
T ss_pred             CceEEEECCC
Confidence            5779998865

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=7.5e-06  Score=50.23  Aligned_cols=44  Identities=23%  Similarity=0.298  Sum_probs=38.3

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS   94 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~   94 (206)
                      .++++++|+||++|+|....+.+...|++|+.+.+++++.+.++
T Consensus        30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~   73 (77)
T d1o8ca2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLK   73 (77)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH
T ss_pred             cCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHH
Confidence            35889999999999999999887889999999999998876543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.01  E-value=6.9e-06  Score=58.73  Aligned_cols=78  Identities=17%  Similarity=0.177  Sum_probs=51.5

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      ..|++|+|+||+||+|...++-....|++|+.+++++++.+.+.    +. +...+  +  |-.+.    ..+.....++
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~----~l-Ga~~v--i--~~~~~----~~~~~~~~~~   96 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR----VL-GAKEV--L--AREDV----MAERIRPLDK   96 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH----HT-TCSEE--E--ECC-------------CCS
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHH----hc-cccee--e--ecchh----HHHHHHHhhc
Confidence            34889999999999999988888889999999999998866543    22 22222  1  22221    1222334444


Q ss_pred             CCccEEEEecc
Q 028656          131 LDVGVLINNVG  141 (206)
Q Consensus       131 ~~id~lvnnAg  141 (206)
                      ..+|+++++.|
T Consensus        97 ~gvD~vid~vg  107 (176)
T d1xa0a2          97 QRWAAAVDPVG  107 (176)
T ss_dssp             CCEEEEEECST
T ss_pred             cCcCEEEEcCC
Confidence            46889999987

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.99  E-value=2.4e-05  Score=54.86  Aligned_cols=74  Identities=16%  Similarity=0.327  Sum_probs=55.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      +++++.++|.|+ |++|+.+++.|..+|. ++.++.|+.++.+++.+++.     .+.  .  +        ++++.+.+
T Consensus        21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~-----~~~--~--~--------~~~~~~~l   82 (159)
T d1gpja2          21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG-----GEA--V--R--------FDELVDHL   82 (159)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHT-----CEE--C--C--------GGGHHHHH
T ss_pred             CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhh-----ccc--c--c--------chhHHHHh
Confidence            467999999998 9999999999999998 69999999998888777652     221  1  1        13334455


Q ss_pred             cCCCccEEEEecccc
Q 028656          129 EGLDVGVLINNVGIS  143 (206)
Q Consensus       129 ~~~~id~lvnnAg~~  143 (206)
                      .+.|  ++|++.+..
T Consensus        83 ~~~D--ivi~atss~   95 (159)
T d1gpja2          83 ARSD--VVVSATAAP   95 (159)
T ss_dssp             HTCS--EEEECCSSS
T ss_pred             ccCC--EEEEecCCC
Confidence            5545  999987743

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.98  E-value=4.1e-05  Score=54.61  Aligned_cols=81  Identities=16%  Similarity=0.243  Sum_probs=57.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc-hHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL-DEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~  129 (206)
                      .|.+++|+|+ |++|...++.....|+ +|+++++++++++.++ ++   + ...+    .|..+.. .+..+.+.+..+
T Consensus        28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~-~l---G-a~~v----i~~~~~~~~~~~~~i~~~~~   97 (182)
T d1vj0a2          28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EI---G-ADLT----LNRRETSVEERRKAIMDITH   97 (182)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-HT---T-CSEE----EETTTSCHHHHHHHHHHHTT
T ss_pred             CCCEEEEECC-Cccchhheecccccccccccccccccccccccc-cc---c-ceEE----EeccccchHHHHHHHHHhhC
Confidence            5899999997 7999998888888998 7999999998876442 22   1 2211    3554432 344456666665


Q ss_pred             CCCccEEEEeccc
Q 028656          130 GLDVGVLINNVGI  142 (206)
Q Consensus       130 ~~~id~lvnnAg~  142 (206)
                      +..+|+++.++|.
T Consensus        98 ~~g~Dvvid~vG~  110 (182)
T d1vj0a2          98 GRGADFILEATGD  110 (182)
T ss_dssp             TSCEEEEEECSSC
T ss_pred             CCCceEEeecCCc
Confidence            5568899999874

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.96  E-value=3.2e-05  Score=54.80  Aligned_cols=80  Identities=23%  Similarity=0.334  Sum_probs=57.8

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      +...++|.++|.|+ ||.+++++..|.+.+.+|.++.|+.++.+++.+.+...   ..+.....|..+            
T Consensus        13 ~~~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~~~~~~------------   76 (171)
T d1p77a1          13 NWLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY---GNIQAVSMDSIP------------   76 (171)
T ss_dssp             TCCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG---SCEEEEEGGGCC------------
T ss_pred             CCCCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhc---cccchhhhcccc------------
Confidence            45677999999988 68899999999998889999999999999998887653   233333322211            


Q ss_pred             hcCCCccEEEEeccccCC
Q 028656          128 IEGLDVGVLINNVGISYP  145 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~  145 (206)
                      ..  +.|++||+......
T Consensus        77 ~~--~~diiIN~tp~g~~   92 (171)
T d1p77a1          77 LQ--TYDLVINATSAGLS   92 (171)
T ss_dssp             CS--CCSEEEECCCC---
T ss_pred             cc--ccceeeeccccccc
Confidence            12  46699999876543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=1.3e-05  Score=56.80  Aligned_cols=52  Identities=12%  Similarity=0.258  Sum_probs=45.7

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHh
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAK  100 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~  100 (206)
                      ..+.+||.++|.|+ ||.+++++..|.+.|.+|.+..|+.++.+++.+.+...
T Consensus        13 ~~~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~   64 (170)
T d1nyta1          13 SFIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT   64 (170)
T ss_dssp             TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG
T ss_pred             CCCCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhc
Confidence            45677999999998 68999999999999999999999999998888777553

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.94  E-value=4.6e-05  Score=53.67  Aligned_cols=80  Identities=15%  Similarity=0.126  Sum_probs=57.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|++++|.|+++++|...++.+...|. +|+++++++++.+...+    .+ ..  .  ..|.+++  +..+++.+..++
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~G-a~--~--~i~~~~~--~~~~~~~~~~~~   95 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AG-AD--Y--VINASMQ--DPLAEIRRITES   95 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HT-CS--E--EEETTTS--CHHHHHHHHTTT
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cC-Cc--e--eeccCCc--CHHHHHHHHhhc
Confidence            478999999999999999999888885 88899999877665432    22 12  1  1244433  455666666655


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                      ..+|+++.++|.
T Consensus        96 ~~~d~vid~~g~  107 (170)
T d1jvba2          96 KGVDAVIDLNNS  107 (170)
T ss_dssp             SCEEEEEESCCC
T ss_pred             ccchhhhccccc
Confidence            568899998874

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.88  E-value=9.4e-06  Score=57.38  Aligned_cols=43  Identities=16%  Similarity=0.223  Sum_probs=38.9

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDS   96 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~   96 (206)
                      +|.++|.|| |.+|+.+|+.|+++|++|++.+|+.++.+++.+.
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~   44 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG   44 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhc
Confidence            688999987 8999999999999999999999999988876654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.82  E-value=5.6e-05  Score=53.65  Aligned_cols=79  Identities=18%  Similarity=0.213  Sum_probs=56.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|.+|+|.|+ ||+|...++.+...|+ +|+.+++++++++... ++    +...    .+|..++  +..+.+.+..++
T Consensus        27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~-~l----Ga~~----~i~~~~~--~~~~~v~~~t~g   94 (174)
T d1jqba2          27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK-FY----GATD----ILNYKNG--HIEDQVMKLTNG   94 (174)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH-HH----TCSE----EECGGGS--CHHHHHHHHTTT
T ss_pred             CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHH-hh----Cccc----cccccch--hHHHHHHHHhhc
Confidence            4778999986 8999998888888897 7999999988766543 23    1121    1344433  445677777666


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                      ..+|++|.++|.
T Consensus        95 ~G~D~vid~~g~  106 (174)
T d1jqba2          95 KGVDRVIMAGGG  106 (174)
T ss_dssp             SCEEEEEECSSC
T ss_pred             cCcceEEEccCC
Confidence            568899999884

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=4.2e-05  Score=54.90  Aligned_cols=78  Identities=21%  Similarity=0.276  Sum_probs=51.8

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEE-EEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVL-VGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      +++|+|+||+||+|...++-....|+++++ +++++++..++.+++    +..    ...|..++  ...+.+.+..++ 
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~----gad----~vi~~~~~--~~~~~~~~~~~~-   99 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL----GFD----AAVNYKTG--NVAEQLREACPG-   99 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS----CCS----EEEETTSS--CHHHHHHHHCTT-
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc----cce----EEeeccch--hHHHHHHHHhcc-
Confidence            589999999999999988887779987554 566666655554443    222    12344544  344555544443 


Q ss_pred             CccEEEEecc
Q 028656          132 DVGVLINNVG  141 (206)
Q Consensus       132 ~id~lvnnAg  141 (206)
                      .+|+++.+.|
T Consensus       100 GvDvv~D~vG  109 (187)
T d1vj1a2         100 GVDVYFDNVG  109 (187)
T ss_dssp             CEEEEEESSC
T ss_pred             CceEEEecCC
Confidence            5789998876

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.0001  Score=51.92  Aligned_cols=80  Identities=19%  Similarity=0.261  Sum_probs=54.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecC-CCchHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS-GDLDEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~  129 (206)
                      .|.+++|.|+ |++|...++.+...|+ +|+++++++++++..+ ++    +...+    .+.. ++..+..+.+....+
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~-~~----Ga~~~----~~~~~~~~~~~~~~~~~~~g   95 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EI----GADLV----LQISKESPQEIARKVEGQLG   95 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HT----TCSEE----EECSSCCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHH-Hh----CCccc----ccccccccccccccccccCC
Confidence            4778999987 8999999988888998 7999999998877543 22    12211    1222 222344455556665


Q ss_pred             CCCccEEEEeccc
Q 028656          130 GLDVGVLINNVGI  142 (206)
Q Consensus       130 ~~~id~lvnnAg~  142 (206)
                      . .+|++|.++|.
T Consensus        96 ~-g~Dvvid~~G~  107 (171)
T d1pl8a2          96 C-KPEVTIECTGA  107 (171)
T ss_dssp             S-CCSEEEECSCC
T ss_pred             C-CceEEEeccCC
Confidence            4 57799999873

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.74  E-value=0.00026  Score=48.62  Aligned_cols=114  Identities=14%  Similarity=0.237  Sum_probs=67.4

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHHHhc-CCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQAKY-AKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      ++++.|.|+ |.+|..+|..++.+|  .+|++.|+++++.+....+++... ..........|.            +...
T Consensus         5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~------------~~~~   71 (146)
T d1ez4a1           5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY------------SDCK   71 (146)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG------------GGGT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH------------HHhc
Confidence            456888896 899999999999987  489999999988777666665421 122222222221            1223


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                        +-|++|.+||.....     ..+   -.+.+..|..    +.+...+.+.+..... ++.+.|
T Consensus        72 --~adivvitag~~~~~-----g~~---r~~l~~~N~~----i~~~~~~~i~~~~p~a-ivivvt  121 (146)
T d1ez4a1          72 --DADLVVITAGAPQKP-----GES---RLDLVNKNLN----ILSSIVKPVVDSGFDG-IFLVAA  121 (146)
T ss_dssp             --TCSEEEECCCC------------------CHHHHHH----HHHHHHHHHHHTTCCS-EEEECS
T ss_pred             --cccEEEEecccccCC-----CCC---HHHHHHHHHH----HHHHHHHHHhhcCCCc-EEEEeC
Confidence              345999999865421     111   2334555654    5666666666665555 555544

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.66  E-value=7.1e-05  Score=53.17  Aligned_cols=51  Identities=25%  Similarity=0.434  Sum_probs=44.1

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhc
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKY  101 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~  101 (206)
                      .+++||.++|.|+ ||.+++++..|.+.| +|.+..|+.++.+++.+++....
T Consensus        14 ~~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~   64 (177)
T d1nvta1          14 GRVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKL   64 (177)
T ss_dssp             CCCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhh
Confidence            3478999999988 589999999998777 99999999999999998887654

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.61  E-value=0.00046  Score=47.78  Aligned_cols=124  Identities=14%  Similarity=0.128  Sum_probs=71.2

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhc--CCceEEEEEEecCCCchHHHHHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKY--AKTQIKSVVVDFSGDLDEGVERIKE  126 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~  126 (206)
                      ..+.+++.|.|+ |.+|..+|..++..+. ++++.|.++++++..+..+....  .+.......   ++..       .+
T Consensus         4 ~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~---~~~~-------~~   72 (154)
T d1pzga1           4 VQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSY-------EA   72 (154)
T ss_dssp             CSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSH-------HH
T ss_pred             ccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEec---cCch-------hh
Confidence            345677888897 8999999999888874 89999999988777777765421  111111111   1110       12


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      ...+-|  ++|.+||.......+-.+.+..   +.+..|..    +.+...+.+.+..... ++.+.|
T Consensus        73 ~~~~ad--iVvitag~~~~~g~~~~~~tR~---~l~~~n~~----iv~~i~~~i~~~~p~a-iviivs  130 (154)
T d1pzga1          73 ALTGAD--CVIVTAGLTKVPGKPDSEWSRN---DLLPFNSK----IIREIGQNIKKYCPKT-FIIVVT  130 (154)
T ss_dssp             HHTTCS--EEEECCSCSSCTTCCGGGCCGG---GGHHHHHH----HHHHHHHHHHHHCTTC-EEEECC
T ss_pred             hhcCCC--eEEEecccccCCCCCCcccchh---hhhhhhHH----HHHHHHHHHHhcCCCc-EEEEeC
Confidence            223334  9999998865432111222322   23444544    4555555555555455 444443

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.59  E-value=0.00056  Score=46.89  Aligned_cols=117  Identities=18%  Similarity=0.160  Sum_probs=69.4

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhc--CCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKY--AKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      |.+.|.|+ |.+|.++|..++.+|.  ++++.|+++++++....++....  .+........|..            .+.
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~------------~l~   68 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWA------------ALA   68 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGG------------GGT
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHH------------Hhc
Confidence            56778895 8999999999998873  89999999998877776676532  2222222222211            122


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                        +-|++|.+||......    +-+-++-.+.++.|.    .+.+...+.+.+..... ++.+-|
T Consensus        69 --~adiVVitaG~~~~~~----~~~g~~R~~l~~~N~----~i~~~i~~~i~~~~p~a-ivivvt  122 (146)
T d1hyha1          69 --DADVVISTLGNIKLQQ----DNPTGDRFAELKFTS----SMVQSVGTNLKESGFHG-VLVVIS  122 (146)
T ss_dssp             --TCSEEEECCSCGGGTC-----------CTTHHHHH----HHHHHHHHHHHHTTCCS-EEEECS
T ss_pred             --cccEEEEecccccccc----ccCCccHHHHHHHHH----HHHHHHHHHHhhcCCCe-EEEEec
Confidence              3449999999754211    101111122344454    46677777777665555 544443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.59  E-value=0.00036  Score=49.15  Aligned_cols=78  Identities=19%  Similarity=0.280  Sum_probs=53.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcE-EEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNL-VLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|.+++|.|+ |++|...++.+...|+++ +++++++++++.++ ++    +...+    .|..++  +..+++.+..++
T Consensus        28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~-~~----Ga~~~----i~~~~~--~~~~~i~~~t~g   95 (174)
T d1f8fa2          28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QL----GATHV----INSKTQ--DPVAAIKEITDG   95 (174)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HH----TCSEE----EETTTS--CHHHHHHHHTTS
T ss_pred             CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHH-Hc----CCeEE----EeCCCc--CHHHHHHHHcCC
Confidence            5888999987 899999998888889865 55677777665543 33    22222    344443  455666666555


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                       .+|+++.+.|.
T Consensus        96 -g~D~vid~~G~  106 (174)
T d1f8fa2          96 -GVNFALESTGS  106 (174)
T ss_dssp             -CEEEEEECSCC
T ss_pred             -CCcEEEEcCCc
Confidence             67899999874

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.58  E-value=0.00067  Score=46.42  Aligned_cols=113  Identities=20%  Similarity=0.294  Sum_probs=68.0

Q ss_pred             EEEEECCCChHHHHHHHHHHHCC--CcEEEEEcCh--hhHHHHHHHHHHhc----CCceEEEEEEecCCCchHHHHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNP--DKLKDVSDSIQAKY----AKTQIKSVVVDFSGDLDEGVERIKE  126 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~--~~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~  126 (206)
                      .+.|.||+|.+|.++|..++.+|  .++++.++++  ++.+..+.++....    .+.++.....+  +.         +
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~--d~---------~   70 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDE--NL---------R   70 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETT--CG---------G
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcc--hH---------H
Confidence            48899999999999999999998  3899999876  34555566665421    12222222111  11         1


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEec
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG  193 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~is  193 (206)
                      .+.  +-|++|.+||.....     ..+.+   +.++.|..    +.+...+.+.+..... |+.+|
T Consensus        71 ~l~--~aDvVVitAG~~~~~-----g~sR~---dl~~~Na~----iv~~i~~~i~~~~~~~-iivVt  122 (145)
T d1hyea1          71 IID--ESDVVIITSGVPRKE-----GMSRM---DLAKTNAK----IVGKYAKKIAEICDTK-IFVIT  122 (145)
T ss_dssp             GGT--TCSEEEECCSCCCCT-----TCCHH---HHHHHHHH----HHHHHHHHHHHHCCCE-EEECS
T ss_pred             Hhc--cceEEEEecccccCC-----CCChh---hhhhhhHH----HHHHHHHHHhccCCCe-EEEEc
Confidence            223  344999999975431     22333   34555655    5666666665554444 65554

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.58  E-value=0.0013  Score=45.09  Aligned_cols=116  Identities=16%  Similarity=0.257  Sum_probs=70.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcC--CceEEEEEEecCCCchHHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYA--KTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      .++.+.|.|+ |.+|.++|..++.+|.  ++++.|+++++++..+.++.....  .........|.            +.
T Consensus         5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~------------~~   71 (148)
T d1ldna1           5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY------------DD   71 (148)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG------------GG
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH------------HH
Confidence            4677888897 8999999999998874  799999999888877777765321  12222222221            11


Q ss_pred             hcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          128 IEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       128 ~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      +.  +-|++|.+||......    +..    .+.+..|.-    +.+...+.+.+......++++|.
T Consensus        72 l~--daDvvvitag~~~~~~----~~R----~dl~~~N~~----i~~~i~~~i~~~~p~a~~ivvtN  124 (148)
T d1ldna1          72 CR--DADLVVICAGANQKPG----ETR----LDLVDKNIA----IFRSIVESVMASGFQGLFLVATN  124 (148)
T ss_dssp             TT--TCSEEEECCSCCCCTT----TCS----GGGHHHHHH----HHHHHHHHHHHHTCCSEEEECSS
T ss_pred             hc--cceeEEEecccccccC----cch----hHHHHHHHH----HHHHHHHHHHhhCCCceEEEecC
Confidence            22  3449999998754321    212    223444543    55566666655544442555443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.57  E-value=0.00023  Score=47.84  Aligned_cols=54  Identities=22%  Similarity=0.340  Sum_probs=43.8

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD  116 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (206)
                      +++|.|+ |.+|+.++++|.++|++|++++.++++.+++.+++     +  ...+..|.++.
T Consensus         2 ~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-----~--~~vi~Gd~~~~   55 (132)
T d1lssa_           2 YIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----D--ALVINGDCTKI   55 (132)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----S--SEEEESCTTSH
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-----h--hhhccCcccch
Confidence            5788888 89999999999999999999999999887765432     2  34567787764

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=6.8e-05  Score=53.40  Aligned_cols=42  Identities=24%  Similarity=0.316  Sum_probs=36.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      ++++++|+||+||+|...++-....|++|+.+++++++.+.+
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~   72 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHH
Confidence            456899999999999998888888999999999999886544

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=97.57  E-value=4.6e-05  Score=53.79  Aligned_cols=43  Identities=28%  Similarity=0.313  Sum_probs=37.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS   94 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~   94 (206)
                      ++++|+|+||+||+|...++-....|++|+.+.+++++.+.+.
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~   65 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLK   65 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHH
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHH
Confidence            4678999999999999988777778999999999988866543

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=0.00014  Score=53.57  Aligned_cols=79  Identities=16%  Similarity=0.144  Sum_probs=55.6

Q ss_pred             ccCCcEEEEECC----------------CChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEec
Q 028656           50 RKYGSWALVTGP----------------TDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF  113 (206)
Q Consensus        50 ~~~~k~vlItGa----------------s~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~  113 (206)
                      +++|++++||+|                ||..|.++|+++.++|++|.++.......           +...+..+..  
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~-----------~p~~~~~~~~--   69 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP-----------TPPFVKRVDV--   69 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC-----------CCTTEEEEEC--
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccC-----------ccccccccee--
Confidence            366899999965                68899999999999999999987754320           1222333322  


Q ss_pred             CCCchHHHHHHHHHhcCCCccEEEEeccccC
Q 028656          114 SGDLDEGVERIKEAIEGLDVGVLINNVGISY  144 (206)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~id~lvnnAg~~~  144 (206)
                       .+.++..+.+.+.++..|  ++|.+|+++.
T Consensus        70 -~t~~~m~~~~~~~~~~~D--~~i~aAAvsD   97 (223)
T d1u7za_          70 -MTALEMEAAVNASVQQQN--IFIGCAAVAD   97 (223)
T ss_dssp             -CSHHHHHHHHHHHGGGCS--EEEECCBCCS
T ss_pred             -hhhHHHHHHHHhhhccce--eEeeeechhh
Confidence             233466677777777655  8999998875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.53  E-value=0.00025  Score=50.04  Aligned_cols=80  Identities=20%  Similarity=0.262  Sum_probs=52.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|.+|+|.|+ +|+|...+.++...|+ +|+.+++++++.+...+.     +....    .|..+. ++..+...+...+
T Consensus        28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~-----Ga~~~----i~~~~~-~~~~~~~~~~~~~   96 (176)
T d2jhfa2          28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV-----GATEC----VNPQDY-KKPIQEVLTEMSN   96 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-----TCSEE----ECGGGC-SSCHHHHHHHHTT
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh-----CCeeE----EecCCc-hhHHHHHHHHHhc
Confidence            5889999999 6899999999999985 889999999887654332     12211    222222 1223333334333


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                      ..+|+++.+.|.
T Consensus        97 ~G~D~vid~~G~  108 (176)
T d2jhfa2          97 GGVDFSFEVIGR  108 (176)
T ss_dssp             SCBSEEEECSCC
T ss_pred             CCCCEEEecCCc
Confidence            357799998874

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.48  E-value=0.00035  Score=49.43  Aligned_cols=81  Identities=21%  Similarity=0.342  Sum_probs=53.0

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      ..|.+++|.|+ ||+|...++.+...|+ +|+++++++++++..++ +    +...+  +  |..+.. ...+.+.+...
T Consensus        28 ~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~-~----GA~~~--i--n~~~~~-~~~~~~~~~~~   96 (176)
T d1d1ta2          28 KPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA-V----GATEC--I--SPKDST-KPISEVLSEMT   96 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-H----TCSEE--E--CGGGCS-SCHHHHHHHHH
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh-c----CCcEE--E--Cccccc-hHHHHHHHHhc
Confidence            35889999986 8999999999999995 89999999999875433 2    12211  1  222221 11233333333


Q ss_pred             CCCccEEEEeccc
Q 028656          130 GLDVGVLINNVGI  142 (206)
Q Consensus       130 ~~~id~lvnnAg~  142 (206)
                      +..+|+++.+.|.
T Consensus        97 g~G~d~vi~~~g~  109 (176)
T d1d1ta2          97 GNNVGYTFEVIGH  109 (176)
T ss_dssp             TSCCCEEEECSCC
T ss_pred             cccceEEEEeCCc
Confidence            3356799988774

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.47  E-value=8.9e-05  Score=52.35  Aligned_cols=43  Identities=21%  Similarity=0.305  Sum_probs=37.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      ..|++++|+||+|++|...++-....|++|+.+++++++.+.+
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~   68 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP   68 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH
T ss_pred             CCCCEEEEEeccccchhhhhhhhcccccccccccccccccccc
Confidence            3588999999999999999888888999999999998776544

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.44  E-value=0.003  Score=43.75  Aligned_cols=117  Identities=21%  Similarity=0.250  Sum_probs=72.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhc--CCceEEEEEEecCCCchHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKY--AKTQIKSVVVDFSGDLDEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~  126 (206)
                      ...+.+.|.|+ |.+|.++|..++.+|.  ++++.|++++..+..+.++....  .+........|..            
T Consensus        18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~------------   84 (160)
T d1i0za1          18 VPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYS------------   84 (160)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGG------------
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchh------------
Confidence            55678888896 8999999999999985  79999999988877777776521  1222221111111            


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      ...  +=|++|..||.....     ..+.   .+.++.|..    +.+...|.+.+.....-++++|.
T Consensus        85 ~~~--~adiVVitAg~~~~~-----g~tR---~~l~~~N~~----i~~~i~~~i~~~~p~aiiivvtN  138 (160)
T d1i0za1          85 VTA--NSKIVVVTAGVRQQE-----GESR---LNLVQRNVN----VFKFIIPQIVKYSPDCIIIVVSN  138 (160)
T ss_dssp             GGT--TCSEEEECCSCCCCT-----TCCG---GGGHHHHHH----HHHHHHHHHHHHCTTCEEEECSS
T ss_pred             hcc--cccEEEEecCCcccc-----Ccch---HHHHHHHHH----HHHHHHHHHHhcCCCcEEEEeCC
Confidence            123  334999999975431     1222   233444544    66777777776655552444443

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.42  E-value=0.0022  Score=43.54  Aligned_cols=112  Identities=11%  Similarity=0.141  Sum_probs=67.9

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC--cEEEEEcC--hhhHHHHHHHHHHh-cCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRN--PDKLKDVSDSIQAK-YAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~--~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      .+.|.||+|.+|.++|..++.+|.  ++++.|.+  ++..+....++... ...........|..            .+.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~------------~~~   69 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYE------------DTA   69 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGG------------GGT
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHH------------Hhh
Confidence            578999999999999999999875  79999864  34455445555432 12333332222211            123


Q ss_pred             CCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEec
Q 028656          130 GLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG  193 (206)
Q Consensus       130 ~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~is  193 (206)
                        +-|++|..||.....     ..+.   .+.++.|..    +.+...+.+.+..... ++.+-
T Consensus        70 --~aDiVvitaG~~~~~-----g~~R---~dl~~~N~~----I~~~i~~~i~~~~p~~-i~ivv  118 (142)
T d1o6za1          70 --GSDVVVITAGIPRQP-----GQTR---IDLAGDNAP----IMEDIQSSLDEHNDDY-ISLTT  118 (142)
T ss_dssp             --TCSEEEECCCCCCCT-----TCCH---HHHHHHHHH----HHHHHHHHHHTTCSCC-EEEEC
T ss_pred             --hcCEEEEeccccccc-----CCch---hhHHHHHHH----HHHHHHHHHHhcCCCc-eEEEe
Confidence              344899999965431     2232   334566655    6777777777665555 44443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.38  E-value=0.00074  Score=46.94  Aligned_cols=41  Identities=22%  Similarity=0.414  Sum_probs=35.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .|++++|.|+ |++|...++-+...|++|+.+++++++++..
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a   67 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLELA   67 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHhh
Confidence            4788999886 8999998888878899999999999887644

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.33  E-value=0.001  Score=46.60  Aligned_cols=78  Identities=22%  Similarity=0.316  Sum_probs=52.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|.+++|.|+ |++|...++.+...|+ +|+.+++++++++..++    . ....+    .|-.+   +..+...+..++
T Consensus        32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~-ga~~~----i~~~~---~~~~~~~~~~~~   98 (172)
T d1h2ba2          32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----L-GADHV----VDARR---DPVKQVMELTRG   98 (172)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----T-TCSEE----EETTS---CHHHHHHHHTTT
T ss_pred             CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----c-cccee----ecCcc---cHHHHHHHhhCC
Confidence            4789999886 8999999888888886 66778888877664432    2 22221    23332   334555555555


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                      ..+|+++.++|.
T Consensus        99 ~g~d~vid~~g~  110 (172)
T d1h2ba2          99 RGVNVAMDFVGS  110 (172)
T ss_dssp             CCEEEEEESSCC
T ss_pred             CCceEEEEecCc
Confidence            468899999874

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.32  E-value=0.0014  Score=44.69  Aligned_cols=115  Identities=17%  Similarity=0.246  Sum_probs=65.3

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      .+.|.||+|.+|.++|..++.+|.  ++++.|.++.+.+  ..++...  .. ......-+..      ....+.+.+-|
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~--a~Dl~~~--~~-~~~~~~~~~~------~~~~~~~~~aD   70 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGV--AADLSHI--ET-RATVKGYLGP------EQLPDCLKGCD   70 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHH--HHHHTTS--SS-SCEEEEEESG------GGHHHHHTTCS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchh--hHHHhhh--hh-hcCCCeEEcC------CChHHHhCCCC
Confidence            588999999999999999998885  7999998764433  2344321  11 1111111221      11223334435


Q ss_pred             ccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          133 VGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       133 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                        ++|..||.....     ..+.   .+.++.|..    +.+...+.+.+......++++|.
T Consensus        71 --ivVitag~~~~~-----g~sR---~~ll~~N~~----i~~~i~~~i~~~~p~~iiivvtN  118 (144)
T d1mlda1          71 --VVVIPAGVPRKP-----GMTR---DDLFNTNAT----IVATLTAACAQHCPDAMICIISN  118 (144)
T ss_dssp             --EEEECCSCCCCT-----TCCG---GGGHHHHHH----HHHHHHHHHHHHCTTSEEEECSS
T ss_pred             --EEEECCCcCCCC-----CCCc---chHHHHHHH----HHHHHHHHHHhcCCCeEEEEecC
Confidence              999999975432     1222   234666666    44555555655554442555444

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.31  E-value=0.0008  Score=47.13  Aligned_cols=80  Identities=20%  Similarity=0.195  Sum_probs=49.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|.+|+|.|+ +|+|...++.+...|+ +|+.+++++++++. .+++    +...+    .|..+..+...+.+.+.-+ 
T Consensus        28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~-ak~l----Ga~~~----i~~~~~~~~~~~~~~~~~~-   96 (176)
T d2fzwa2          28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFAR-AKEF----GATEC----INPQDFSKPIQEVLIEMTD-   96 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHH-HHHH----TCSEE----ECGGGCSSCHHHHHHHHTT-
T ss_pred             CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHH-HHHh----CCcEE----EeCCchhhHHHHHHHHHcC-
Confidence            5889999998 5999999988888997 56667777777543 3334    22221    2333221222233333333 


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                      ..+|+++.+.|.
T Consensus        97 ~g~D~vid~~G~  108 (176)
T d2fzwa2          97 GGVDYSFECIGN  108 (176)
T ss_dssp             SCBSEEEECSCC
T ss_pred             CCCcEeeecCCC
Confidence            357799998873

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.28  E-value=0.004  Score=42.04  Aligned_cols=112  Identities=15%  Similarity=0.201  Sum_probs=67.8

Q ss_pred             EEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHHHhcC-CceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQAKYA-KTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .+.|.|+ |++|.+++..++.++  .++++.|+++++++....++....+ .........|.            +.+.  
T Consensus         2 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~------------~~~~--   66 (140)
T d1a5za1           2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY------------ADLK--   66 (140)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG------------GGGT--
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcH------------HHhc--
Confidence            3667786 899999999999877  4899999999888776666655321 22222222111            1123  


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEec
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG  193 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~is  193 (206)
                      +-|++|.+||.....     ..+..   +.+..|..    +.+...+.+.+......++++|
T Consensus        67 ~adivvitag~~~~~-----g~~r~---dl~~~N~~----I~~~i~~~i~~~~p~aivivvt  116 (140)
T d1a5za1          67 GSDVVIVAAGVPQKP-----GETRL---QLLGRNAR----VMKEIARNVSKYAPDSIVIVVT  116 (140)
T ss_dssp             TCSEEEECCCCCCCS-----SCCHH---HHHHHHHH----HHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCCEEEEecccccCC-----Ccchh---hhhccccc----hHHHHHHHHHhcCCCcEEEEeC
Confidence            344899999875432     22322   23444543    6677777776665555244444

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=97.27  E-value=0.0062  Score=41.26  Aligned_cols=112  Identities=17%  Similarity=0.256  Sum_probs=68.3

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHh--cCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAK--YAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .+.|.|+ |.+|.++|..++.+|.  ++++.|+++++.+..+.+++..  ..+........|..            ... 
T Consensus         3 Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~------------~~~-   68 (143)
T d1llda1           3 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE------------ICR-   68 (143)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG------------GGT-
T ss_pred             EEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHH------------Hhh-
Confidence            3667786 9999999999998875  7999999998877766666652  12222111111111            112 


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                       +-|++|..||.....     ..+..   +.+..|..    +.+...+.+.+..... ++.+.|
T Consensus        69 -daDvVVitaG~~~~~-----g~~R~---dl~~~N~~----i~~~i~~~i~~~~p~a-i~ivvt  118 (143)
T d1llda1          69 -DADMVVITAGPRQKP-----GQSRL---ELVGATVN----ILKAIMPNLVKVAPNA-IYMLIT  118 (143)
T ss_dssp             -TCSEEEECCCCCCCT-----TCCHH---HHHHHHHH----HHHHHHHHHHHHCTTS-EEEECC
T ss_pred             -CCcEEEEecccccCC-----CCchh---hhhhhhHH----HHHHHHHHHHhhCCCe-EEEEeC
Confidence             344999999975431     23333   34555654    6666666666665555 544443

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.0029  Score=43.80  Aligned_cols=117  Identities=20%  Similarity=0.308  Sum_probs=71.0

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcC--CceEEEEEEecCCCchHHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYA--KTQIKSVVVDFSGDLDEGVERIKE  126 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~  126 (206)
                      ++...+.|.|+ |.+|..+|..++.+|.  ++++.|+++++.+..+.++.....  +........|..            
T Consensus        17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~------------   83 (159)
T d2ldxa1          17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYN------------   83 (159)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGG------------
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchh------------
Confidence            33456777886 8999999999999875  799999999888877777765321  122222221211            


Q ss_pred             HhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          127 AIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       127 ~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      ...  +-|++|..||......     .+.+   +.++.|..    +.+...+.+.+.....-++++|.
T Consensus        84 ~~~--~adivvitag~~~~~~-----~~R~---dll~~N~~----i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          84 VSA--NSKLVIITAGARMVSG-----QTRL---DLLQRNVA----IMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             GGT--TEEEEEECCSCCCCTT-----TCSS---CTTHHHHH----HHHHHTTTHHHHSTTCEEEECSS
T ss_pred             hhc--cccEEEEecccccCCC-----CCHH---HHHHHHHH----HHHHHHHHHhccCCCeEEEEeCC
Confidence            112  4558999998754321     1211   12343443    67777777776655552444443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.23  E-value=0.00031  Score=49.68  Aligned_cols=81  Identities=17%  Similarity=0.209  Sum_probs=52.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      ..|.+|+|.|+ ||+|...++.+...|+ +|+++++++++++.. +++    +...+    .|..+. ++..+...+...
T Consensus        27 ~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a-~~~----Ga~~~----i~~~~~-~~~~~~~~~~~~   95 (174)
T d1e3ia2          27 TPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKA-KAL----GATDC----LNPREL-DKPVQDVITELT   95 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT----TCSEE----ECGGGC-SSCHHHHHHHHH
T ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHH-HHh----CCCcc----cCCccc-hhhhhhhHhhhh
Confidence            35789999975 9999999999999998 577889988886433 232    22221    222211 122333444444


Q ss_pred             CCCccEEEEeccc
Q 028656          130 GLDVGVLINNVGI  142 (206)
Q Consensus       130 ~~~id~lvnnAg~  142 (206)
                      +..+|+++.++|.
T Consensus        96 ~~G~d~vie~~G~  108 (174)
T d1e3ia2          96 AGGVDYSLDCAGT  108 (174)
T ss_dssp             TSCBSEEEESSCC
T ss_pred             cCCCcEEEEeccc
Confidence            4467799999874

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.22  E-value=0.00079  Score=47.39  Aligned_cols=81  Identities=19%  Similarity=0.186  Sum_probs=52.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      ..|.+|+|.|+ ||+|...++.+...|+ +|+.+++++++++..++ +    +...+    .|..+.. ...+++.+...
T Consensus        26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~-l----Ga~~~----i~~~~~d-~~~~~~~~~~~   94 (174)
T d1p0fa2          26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE-L----GATEC----LNPKDYD-KPIYEVICEKT   94 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-T----TCSEE----ECGGGCS-SCHHHHHHHHT
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHHH-c----CCcEE----EcCCCch-hHHHHHHHHhc
Confidence            35889999986 8999999999999997 78899999988865432 2    22222    2333221 22233333333


Q ss_pred             CCCccEEEEeccc
Q 028656          130 GLDVGVLINNVGI  142 (206)
Q Consensus       130 ~~~id~lvnnAg~  142 (206)
                      +...|++|.++|.
T Consensus        95 ~~G~d~vid~~g~  107 (174)
T d1p0fa2          95 NGGVDYAVECAGR  107 (174)
T ss_dssp             TSCBSEEEECSCC
T ss_pred             CCCCcEEEEcCCC
Confidence            3357799988774

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.21  E-value=0.0016  Score=46.65  Aligned_cols=79  Identities=20%  Similarity=0.205  Sum_probs=54.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .|.+|+|.|+ +++|...+......|+ +|+++++++++++.+.+    .  +...   ..|-.++  +..+++.+..++
T Consensus        25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~----~--Ga~~---~~~~~~~--~~~~~i~~~t~g   92 (195)
T d1kola2          25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----Q--GFEI---ADLSLDT--PLHEQIAALLGE   92 (195)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----T--TCEE---EETTSSS--CHHHHHHHHHSS
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhhh----c--cccE---EEeCCCc--CHHHHHHHHhCC
Confidence            4889999986 7999888887777787 78889999887764332    1  2211   1222222  555666666666


Q ss_pred             CCccEEEEeccc
Q 028656          131 LDVGVLINNVGI  142 (206)
Q Consensus       131 ~~id~lvnnAg~  142 (206)
                      ...|+++.+.|.
T Consensus        93 ~g~D~vid~vG~  104 (195)
T d1kola2          93 PEVDCAVDAVGF  104 (195)
T ss_dssp             SCEEEEEECCCT
T ss_pred             CCcEEEEECccc
Confidence            568899999884

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.15  E-value=0.00041  Score=46.51  Aligned_cols=54  Identities=20%  Similarity=0.289  Sum_probs=41.7

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD  116 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (206)
                      |.++|.|+ |-+|+.++++|.++|++|++++.++++.+++.+.      +.  ..+.+|.++.
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~------~~--~~~~gd~~~~   54 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY------AT--HAVIANATEE   54 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT------CS--EEEECCTTCT
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh------CC--cceeeecccc
Confidence            45778877 6899999999999999999999999887765321      22  3455777765

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.13  E-value=0.00043  Score=48.53  Aligned_cols=45  Identities=18%  Similarity=0.296  Sum_probs=39.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~   97 (206)
                      ++|.++|.|+ ||.+++++..|.+.|. +|.++.|+.++.+++.+.+
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~   61 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY   61 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh
Confidence            5788999988 7999999999999997 7999999999888776654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.13  E-value=0.0051  Score=43.17  Aligned_cols=118  Identities=19%  Similarity=0.204  Sum_probs=64.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHC---CC----cEEEEEcCh--hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKT---GL----NLVLVGRNP--DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVE  122 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~---g~----~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  122 (206)
                      +--+|.|+||+|.||.+++..+++.   |.    .+.+.+.+.  +.++...-++....... ......  ++.      
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~-~~~~~~--~~~------   93 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPL-LREVSI--GID------   93 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-EEEEEE--ESC------
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccccc-ccCccc--ccc------
Confidence            3457999999999999999999974   32    344455544  34555555554432222 221111  222      


Q ss_pred             HHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC-CCCceEEEec
Q 028656          123 RIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR-KKGLSMLNIG  193 (206)
Q Consensus       123 ~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~~iv~is  193 (206)
                       ..+.+.+  -|++|-.+|.....     ..+.+   +.++.|..    +.+...+.+.+. +....|+.+|
T Consensus        94 -~~~~~~~--aDvVvi~ag~~rkp-----g~tR~---Dll~~N~~----I~k~~~~~i~~~a~~~~~vlvv~  150 (175)
T d7mdha1          94 -PYEVFED--VDWALLIGAKPRGP-----GMERA---ALLDINGQ----IFADQGKALNAVASKNVKVLVVG  150 (175)
T ss_dssp             -HHHHTTT--CSEEEECCCCCCCT-----TCCHH---HHHHHHHH----HHHHHHHHHHHHSCTTCEEEECS
T ss_pred             -chhhccC--CceEEEeeccCCCC-----CCcHH---HHHHHHHH----HHHHHHHHHHhhCCCCcEEEEec
Confidence             1233443  45999999875432     23433   34555644    556666666553 3333144444

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.00043  Score=48.42  Aligned_cols=41  Identities=22%  Similarity=0.271  Sum_probs=35.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      .|.+++|.|+ |++|...++.+...|++|+++++++++++..
T Consensus        27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a   67 (168)
T d1piwa2          27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDA   67 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHH
T ss_pred             CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHh
Confidence            5889999987 8999998877778899999999999887654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.11  E-value=0.0025  Score=43.82  Aligned_cols=116  Identities=18%  Similarity=0.196  Sum_probs=63.2

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC---------cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL---------NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIK  125 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~---------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  125 (206)
                      +|.|+||+|.+|..++..++..+.         +++..+++.+.++....++.... ..........  +.       ..
T Consensus         6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~-------~~   75 (154)
T d1y7ta1           6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA-FPLLAGLEAT--DD-------PK   75 (154)
T ss_dssp             EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT-CTTEEEEEEE--SC-------HH
T ss_pred             EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccc-cccccccccC--Cc-------hh
Confidence            699999999999999999998653         12222344455555555544422 2222223222  11       11


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC-CCCceEEEecc
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR-KKGLSMLNIGK  194 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~~iv~isS  194 (206)
                      +.+.+  -|++|..||.....     ..+.++   .++.|..    +.+.+.+.+.+. .....++.+|.
T Consensus        76 ~~~~~--advViitaG~~~~p-----g~~r~d---l~~~N~~----i~~~~~~~i~k~a~~~~~vivvsN  131 (154)
T d1y7ta1          76 VAFKD--ADYALLVGAAPRKA-----GMERRD---LLQVNGK----IFTEQGRALAEVAKKDVKVLVVGN  131 (154)
T ss_dssp             HHTTT--CSEEEECCCCCCCT-----TCCHHH---HHHHHHH----HHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             hhccc--ccEEEeecCcCCCC-----CCcHHH---HHHHHHH----HHHHHHHHHHHhCCCCcEEEEecC
Confidence            33343  44999999976431     334333   3455554    556666666553 33331444543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=97.08  E-value=0.0015  Score=45.67  Aligned_cols=81  Identities=21%  Similarity=0.272  Sum_probs=51.2

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      ..|.+|+|.|+ +|+|...+.+++..|+ +|+.+++++++++...+ +    +...  .+  |..++. ...++..+...
T Consensus        27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~-~----GAd~--~i--n~~~~~-~~~~~~~~~~~   95 (175)
T d1cdoa2          27 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV-F----GATD--FV--NPNDHS-EPISQVLSKMT   95 (175)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-T----TCCE--EE--CGGGCS-SCHHHHHHHHH
T ss_pred             CCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHHH-c----CCcE--EE--cCCCcc-hhHHHHHHhhc
Confidence            35889999986 6788888888888876 68889999988765432 2    2222  22  322221 12234444443


Q ss_pred             CCCccEEEEeccc
Q 028656          130 GLDVGVLINNVGI  142 (206)
Q Consensus       130 ~~~id~lvnnAg~  142 (206)
                      +..+|+++.+.|.
T Consensus        96 ~~G~d~vid~~G~  108 (175)
T d1cdoa2          96 NGGVDFSLECVGN  108 (175)
T ss_dssp             TSCBSEEEECSCC
T ss_pred             cCCcceeeeecCC
Confidence            3357799999874

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.07  E-value=0.0017  Score=42.21  Aligned_cols=39  Identities=15%  Similarity=0.057  Sum_probs=34.6

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD   88 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~   88 (206)
                      ++++||+++|.||+ .+|..-++.|.+.|++|++.+....
T Consensus         8 l~l~~k~vlVvG~G-~va~~ka~~ll~~ga~v~v~~~~~~   46 (113)
T d1pjqa1           8 CQLRDRDCLIVGGG-DVAERKARLLLEAGARLTVNALTFI   46 (113)
T ss_dssp             ECCBTCEEEEECCS-HHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred             EEeCCCEEEEECCC-HHHHHHHHHHHHCCCeEEEEeccCC
Confidence            46789999999996 6999999999999999999987654

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.07  E-value=0.0059  Score=41.22  Aligned_cols=114  Identities=17%  Similarity=0.218  Sum_probs=64.4

Q ss_pred             EEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHHHHHhc--CCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDSIQAKY--AKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .+.|.|+ |.+|.+++..++..|  .++++.|+++++++.....+....  ..........   ++.        +.+. 
T Consensus         2 KI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~---~~~--------~~~~-   68 (142)
T d1guza1           2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS---NDY--------ADTA-   68 (142)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE---SCG--------GGGT-
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec---CCH--------HHhc-
Confidence            3677796 899999999999987  489999999987765554543311  1112222211   111        1123 


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                       +-|++|.+||.....     ..+.   ...++.|..    +.+...+.+.+.....-++++|-
T Consensus        69 -dadvvvitag~~~~~-----g~~r---~~l~~~N~~----i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1guza1          69 -NSDIVIITAGLPRKP-----GMTR---EDLLMKNAG----IVKEVTDNIMKHSKNPIIIVVSN  119 (142)
T ss_dssp             -TCSEEEECCSCCCCT-----TCCH---HHHHHHHHH----HHHHHHHHHHHHCSSCEEEECCS
T ss_pred             -CCeEEEEEEecCCCC-----CCch---HHHHHHHHH----HHHHHHHHhhccCCCeEEEEecC
Confidence             445999999875432     1222   233444544    45555555554444441444443

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00082  Score=48.16  Aligned_cols=44  Identities=30%  Similarity=0.343  Sum_probs=37.6

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQ   98 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~   98 (206)
                      |++.|.|| |-+|..+|..++..|++|++.+++++.+++..+.++
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~   48 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIE   48 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHH
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHH
Confidence            67899999 679999999999999999999999987766555443

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.01  E-value=0.0017  Score=44.17  Aligned_cols=113  Identities=20%  Similarity=0.213  Sum_probs=61.9

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhcC-CceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKYA-KTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .+.|.|+ |.+|.++|..++.+|.  ++++.|+++++.+....++....+ .........    +        .+...  
T Consensus         3 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~----~--------~~~~~--   67 (142)
T d1y6ja1           3 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG----D--------YSDVK--   67 (142)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC------C--------GGGGT--
T ss_pred             eEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeC----c--------HHHhC--
Confidence            3556687 9999999999999875  799999999877666666654211 112211111    1        11233  


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                      +-|++|..||.....     ..+.   ...+..|..    +.+...+.+.+.....-++++|.
T Consensus        68 ~adivvitag~~~~~-----~~~r---~~l~~~N~~----i~~~i~~~i~~~~p~ai~ivvtN  118 (142)
T d1y6ja1          68 DCDVIVVTAGANRKP-----GETR---LDLAKKNVM----IAKEVTQNIMKYYNHGVILVVSN  118 (142)
T ss_dssp             TCSEEEECCCC-----------CH---HHHHHHHHH----HHHHHHHHHHHHCCSCEEEECSS
T ss_pred             CCceEEEecccccCc-----Ccch---hHHhhHHHH----HHHHHHHHhhccCCCceEEEecC
Confidence            345999999866431     1222   334555654    66666666666544441444443

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.00  E-value=0.014  Score=39.29  Aligned_cols=113  Identities=11%  Similarity=0.057  Sum_probs=67.1

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHHHHHHhc--CCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSDSIQAKY--AKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .+.|.|+ |.+|.++|..++.+|.  ++++.|+++++.+....+++...  .+........+..           +.+. 
T Consensus         2 KI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-----------~~~~-   68 (142)
T d1ojua1           2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-----------SLLK-   68 (142)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-----------GGGT-
T ss_pred             EEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-----------HHhc-
Confidence            3667786 9999999999998874  79999999988877666665421  1222222222111           1223 


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                       +-|++|..||.....     ..+.   .+.+..|..    +.+...+.+.+..... ++.+.|
T Consensus        69 -~adiVvitag~~~~~-----g~~r---~~l~~~n~~----i~~~i~~~i~~~~p~a-ivivvt  118 (142)
T d1ojua1          69 -GSEIIVVTAGLARKP-----GMTR---LDLAHKNAG----IIKDIAKKIVENAPES-KILVVT  118 (142)
T ss_dssp             -TCSEEEECCCCCCCS-----SCCH---HHHHHHHHH----HHHHHHHHHHTTSTTC-EEEECS
T ss_pred             -cccEEEEeccccCCC-----CCch---HHHHHHhhH----HHHHHHHHHHhhCCCc-EEEEec
Confidence             344899999865432     2232   233444544    5666666666655444 444444

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.99  E-value=0.0012  Score=45.15  Aligned_cols=43  Identities=16%  Similarity=0.207  Sum_probs=36.6

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLK   91 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~   91 (206)
                      ++..-|++.|.||.|-+|..+|+.|.+.|++|.+.+|+.....
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~   47 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVA   47 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGH
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccccc
Confidence            3444578999999999999999999999999999999875433

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.95  E-value=0.0039  Score=42.22  Aligned_cols=114  Identities=15%  Similarity=0.162  Sum_probs=65.3

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhc--CCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKY--AKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      |.+.|.|+ |.+|.++|..++.++. ++++.|.++++.+..+.++....  .+........+..+           ... 
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-----------~~~-   68 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-----------DTA-   68 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-----------GGT-
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-----------Hhc-
Confidence            45677786 8999999999998874 89999999887776666664311  11111122111111           112 


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                       +-|++|-+||.....     ..+.   .+.++.|.    .+.+...+.+.+..... ++.+.|
T Consensus        69 -~advvvitag~~~~~-----~~~r---~dl~~~N~----~i~~~i~~~i~k~~p~a-ivivvt  118 (142)
T d1uxja1          69 -NSDVIVVTSGAPRKP-----GMSR---EDLIKVNA----DITRACISQAAPLSPNA-VIIMVN  118 (142)
T ss_dssp             -TCSEEEECCSCC-----------------CHHHHH----HHHHHHHHHHGGGCTTC-EEEECS
T ss_pred             -CCCEEEEeeeccCCc-----Ccch---hHHHhHHH----HHHHHHHHHHhccCCCc-eEEEeC
Confidence             344899999975431     1121   23345554    36777777777665555 554444

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00054  Score=43.08  Aligned_cols=38  Identities=13%  Similarity=0.070  Sum_probs=33.2

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD   88 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~   88 (206)
                      +++||+++|.|. |.-|+++|+.|.++|++|.+.|.+..
T Consensus         2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            357999999999 56799999999999999999998653

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.93  E-value=0.0046  Score=42.29  Aligned_cols=119  Identities=14%  Similarity=0.140  Sum_probs=68.1

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhc--CCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKY--AKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      ..+.|.|+ |++|.+++..+..++. ++++.|+++++.+....+++...  ..........+..           +.+. 
T Consensus         4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~-----------~~~~-   70 (150)
T d1t2da1           4 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-----------DDLA-   70 (150)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-----------GGGT-
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccc-----------cccC-
Confidence            35777785 8999999988887774 89999999988777776665421  1222222222211           1122 


Q ss_pred             CCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEec
Q 028656          131 LDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIG  193 (206)
Q Consensus       131 ~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~is  193 (206)
                       +-|++|.++|........-.+.+.   ...++.|.    .+.+.+.+.+.+.....-++++|
T Consensus        71 -~advvvitag~~~~~g~~~~~~~R---~~l~~~N~----~iv~~i~~~i~~~~p~aivivvt  125 (150)
T d1t2da1          71 -GADVVIVTAGFTKAPGKSDKEWNR---DDLLPLNN----KIMIEIGGHIKKNCPNAFIIVVT  125 (150)
T ss_dssp             -TCSEEEECCSCSSCTTCCSTTCCG---GGGHHHHH----HHHHHHHHHHHHHCTTSEEEECS
T ss_pred             -CCcEEEEecccccCCCCCccccch---hHHHHHHH----HHHHHHHHHHHhcCCCeEEEEec
Confidence             344999999976532100011111   22355554    36666666666555444144444

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.87  E-value=0.00063  Score=48.36  Aligned_cols=104  Identities=17%  Similarity=0.148  Sum_probs=60.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHH-HHHHHHHhcCCceEEEEEEecCCCchHHH-HHHHHHh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKD-VSDSIQAKYAKTQIKSVVVDFSGDLDEGV-ERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~  128 (206)
                      ++||++.|.|.+ .||+.+++.+...|++|...+|+...... ....+.+......+..+.+..+++-...+ ++..+..
T Consensus        40 l~gk~vgIiG~G-~IG~~va~~l~~~g~~v~~~d~~~~~~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~m  118 (181)
T d1qp8a1          40 IQGEKVAVLGLG-EIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALM  118 (181)
T ss_dssp             CTTCEEEEESCS-THHHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTS
T ss_pred             ccCceEEEeccc-cccccceeeeeccccccccccccccccceeeeechhhhhhccchhhcccccccccccccccceeeec
Confidence            789999999996 59999999999999999999986522110 11112222235566666666665422222 3333333


Q ss_pred             cCCCccEEEEeccccCCcccccccCCHHHHHHHHhhh
Q 028656          129 EGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVN  165 (206)
Q Consensus       129 ~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N  165 (206)
                      ++-.  ++|| +|...       -.+.+++.+.++-+
T Consensus       119 k~~a--ilIN-~~RG~-------ivd~~aL~~aL~~~  145 (181)
T d1qp8a1         119 AEDA--VFVN-VGRAE-------VLDRDGVLRILKER  145 (181)
T ss_dssp             CTTC--EEEE-CSCGG-------GBCHHHHHHHHHHC
T ss_pred             cccc--eEEe-ccccc-------cccchhhhhhcccC
Confidence            3322  4555 44321       23455555555543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.85  E-value=0.0012  Score=46.36  Aligned_cols=42  Identities=24%  Similarity=0.321  Sum_probs=36.6

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~   95 (206)
                      .|++.|.|+ |.+|.++|..|+++|++|.+.+|++++.+...+
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~   42 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQD   42 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            378899999 799999999999999999999999887766543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.83  E-value=0.0036  Score=43.21  Aligned_cols=42  Identities=29%  Similarity=0.438  Sum_probs=35.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS   94 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~   94 (206)
                      .|.+++|.|+ |++|...++.+...|++|+++++++++++..+
T Consensus        27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k   68 (168)
T d1rjwa2          27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK   68 (168)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhhhh
Confidence            4788999875 88999988888889999999999998876543

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.036  Score=37.39  Aligned_cols=115  Identities=20%  Similarity=0.244  Sum_probs=64.6

Q ss_pred             EEEEECCCChHHHHHHHHHHHC-C--CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKT-G--LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~-g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .+.|+|++|.+|.++|..++.+ +  .++++.|.++ ..+....++.........  ....-+++ .   +    .+.+ 
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~--~~~~~~~~-~---~----~~~~-   69 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKI--KGFSGEDA-T---P----ALEG-   69 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEE--EEECSSCC-H---H----HHTT-
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCC--cEEEcCCC-c---c----ccCC-
Confidence            4789999999999999988643 4  5899999864 455445556543212211  11111222 1   1    2233 


Q ss_pred             CccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhCCCCceEEEecc
Q 028656          132 DVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKRKKGLSMLNIGK  194 (206)
Q Consensus       132 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~~iv~isS  194 (206)
                       -|++|..||.....     ..+.   .+.++.|..    +.+...+.+.+.....-++++|.
T Consensus        70 -aDvvvitaG~~~k~-----g~~R---~dl~~~N~~----i~~~v~~~i~~~~p~aivivvtN  119 (145)
T d2cmda1          70 -ADVVLISAGVRRKP-----GMDR---SDLFNVNAG----IVKNLVQQVAKTCPKACIGIITN  119 (145)
T ss_dssp             -CSEEEECCSCCCCT-----TCCG---GGGHHHHHH----HHHHHHHHHHHHCTTSEEEECSS
T ss_pred             -CCEEEECCCccCCC-----Ccch---hhHHHHHHH----HHHHHHHHHHhhCCCcEEEEccC
Confidence             44999999975432     1222   234566654    55555555555544442555554

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.0019  Score=44.88  Aligned_cols=40  Identities=20%  Similarity=0.135  Sum_probs=34.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKD   92 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~   92 (206)
                      .|++|+|.|+ |++|...++.....|+++++++++.++.+.
T Consensus        30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~   69 (168)
T d1uufa2          30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREA   69 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHH
Confidence            4889999986 899999888887899999999999887653

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.68  E-value=0.0015  Score=46.53  Aligned_cols=43  Identities=21%  Similarity=0.252  Sum_probs=36.9

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~   97 (206)
                      |++.|.|| |-+|..+|..++..|++|++.+++++.+++..+.+
T Consensus         5 ~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i   47 (186)
T d1wdka3           5 KQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEA   47 (186)
T ss_dssp             SSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhh
Confidence            46888898 67999999999999999999999998777655544

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.65  E-value=0.011  Score=41.78  Aligned_cols=90  Identities=19%  Similarity=0.173  Sum_probs=54.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH-----HHHHhcCCceEEEEEEecCCCchHHH-HH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD-----SIQAKYAKTQIKSVVVDFSGDLDEGV-ER  123 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~~~~~-~~  123 (206)
                      .+.||++.|.|. |.||+++++.+...|++|+..++...+......     .+.+......+..+.+..+++-...+ ++
T Consensus        41 ~l~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~  119 (184)
T d1ygya1          41 EIFGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKE  119 (184)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHH
T ss_pred             cccceeeeeccc-cchhHHHHHHhhhccceEEeecCCCChhHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHH
Confidence            477999999986 699999999999999999999986543222111     11111123456666676665432333 23


Q ss_pred             HHHHhcCCCccEEEEecccc
Q 028656          124 IKEAIEGLDVGVLINNVGIS  143 (206)
Q Consensus       124 ~~~~~~~~~id~lvnnAg~~  143 (206)
                      ..+..   +.+.++-|.|..
T Consensus       120 ~l~~m---k~~a~lIN~sRG  136 (184)
T d1ygya1         120 ALAKT---KPGVIIVNAARG  136 (184)
T ss_dssp             HHTTS---CTTEEEEECSCT
T ss_pred             HHhhh---CCCceEEEecch
Confidence            33333   333555555543

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.57  E-value=0.0055  Score=43.86  Aligned_cols=37  Identities=16%  Similarity=0.127  Sum_probs=33.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .++||++.|.|- |.||+.+|+.+...|++|+..++..
T Consensus        40 el~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~   76 (197)
T d1j4aa1          40 EVRDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFR   76 (197)
T ss_dssp             CGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccCCeEEEecc-cccchhHHHhHhhhcccccccCccc
Confidence            478999999998 5899999999999999999998754

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.51  E-value=0.012  Score=42.21  Aligned_cols=43  Identities=23%  Similarity=0.353  Sum_probs=37.7

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      +++||+++|.|- |.+|..+|+.|.+.|++|++.+.+.+.+...
T Consensus        24 ~L~gk~v~IqG~-G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~   66 (201)
T d1c1da1          24 SLDGLTVLVQGL-GAVGGSLASLAAEAGAQLLVADTDTERVAHA   66 (201)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence            577999999984 6799999999999999999999988776554

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.45  E-value=0.0099  Score=41.47  Aligned_cols=41  Identities=15%  Similarity=0.272  Sum_probs=35.3

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~   95 (206)
                      +.+-+.|- |-+|..+|+.|+++|++|.+.+|++++.+++.+
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~   43 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA   43 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH
Confidence            45667777 789999999999999999999999988877654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.0049  Score=45.52  Aligned_cols=61  Identities=25%  Similarity=0.333  Sum_probs=49.1

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEEEE
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIKSV  109 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~  109 (206)
                      ++++++|+|.|+ ||+|..+++.|++.|. ++.++|.+                   ..+.+.+++.+++.+++..+..+
T Consensus        27 kL~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~  105 (247)
T d1jw9b_          27 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV  105 (247)
T ss_dssp             HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHhCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhh
Confidence            477999999996 6999999999999997 78888764                   24677778888888777777665


Q ss_pred             EE
Q 028656          110 VV  111 (206)
Q Consensus       110 ~~  111 (206)
                      ..
T Consensus       106 ~~  107 (247)
T d1jw9b_         106 NA  107 (247)
T ss_dssp             CS
T ss_pred             hh
Confidence            43

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.014  Score=39.54  Aligned_cols=57  Identities=14%  Similarity=0.165  Sum_probs=44.4

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD  116 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (206)
                      +++|.|. +.+|+.++++|.++|.++++++.++++..+..++...    ..+.++..|.++.
T Consensus         5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~   61 (153)
T d1id1a_           5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDS   61 (153)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSH
T ss_pred             EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcch
Confidence            5778887 5899999999999999999999998876665555543    2356677887764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.39  E-value=0.027  Score=38.37  Aligned_cols=105  Identities=23%  Similarity=0.246  Sum_probs=56.7

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC-------cEEEEEcCh--hhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL-------NLVLVGRNP--DKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIK  125 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  125 (206)
                      +|.|+||+|.+|.+++..+++.+.       .+++.+.+.  ++++....++.... .......  ...+.       ..
T Consensus         5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~-~~~~~~~--~~~~~-------~~   74 (154)
T d5mdha1           5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCA-LPLLKDV--IATDK-------EE   74 (154)
T ss_dssp             EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTC-CTTEEEE--EEESC-------HH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccc-ccccccc--ccCcc-------cc
Confidence            699999999999999999986542       355555443  33444444443321 1122222  22222       11


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhhhHHHHHHHHHhhhhHhC
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNVEGTTKVTQAVLPGMLKR  183 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~  183 (206)
                      +.+.  +-|++|-.+|......     .+.+   +.++.|..    +.+...+.+.+.
T Consensus        75 ~~~~--~~dvVVitag~~~~~g-----~sr~---dll~~N~~----i~k~~~~~i~k~  118 (154)
T d5mdha1          75 IAFK--DLDVAILVGSMPRRDG-----MERK---DLLKANVK----IFKCQGAALDKY  118 (154)
T ss_dssp             HHTT--TCSEEEECCSCCCCTT-----CCTT---TTHHHHHH----HHHHHHHHHHHH
T ss_pred             cccC--CceEEEEecccCCCCC-----Cchh---HHHHHhHH----HHHHHHHHHHhh
Confidence            2233  3458999998765421     2222   23455553    566666666553

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.25  E-value=0.01  Score=42.27  Aligned_cols=38  Identities=18%  Similarity=0.262  Sum_probs=33.8

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .+++||++.|.|. |.||+++|+.+...|++|...++..
T Consensus        45 ~eL~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          45 ARIRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             eeeeCceEEEecc-ccccccceeeeeccccceeeccCcc
Confidence            3478999999987 6899999999999999999998864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.23  E-value=0.0023  Score=43.70  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=33.3

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN   86 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~   86 (206)
                      ++++||+++|.||+ .+|..-++.|++.|++|++++..
T Consensus         9 ~~l~gkrvLViGgG-~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           9 HQLKDKRILLIGGG-EVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             ECCTTCEEEEEEES-HHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eeeCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCC
Confidence            56889999999994 69999999999999999999764

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.16  E-value=0.0054  Score=43.50  Aligned_cols=90  Identities=11%  Similarity=0.088  Sum_probs=55.0

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH-------HHHHhcCCceEEEEEEecCCCchHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD-------SIQAKYAKTQIKSVVVDFSGDLDEGV  121 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~-------~~~~~~~~~~~~~~~~d~~~~~~~~~  121 (206)
                      .+++++++.|.|. |.||+++++.+...|.+|...++.........+       .+.+......+..+.+.++++-...+
T Consensus        40 ~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li  118 (188)
T d2naca1          40 YDLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMI  118 (188)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCB
T ss_pred             eeccccceeeccc-cccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchhhh
Confidence            3467999999997 589999999999999999999986432211111       12222235566677777765432333


Q ss_pred             -HHHHHHhcCCCccEEEEeccc
Q 028656          122 -ERIKEAIEGLDVGVLINNVGI  142 (206)
Q Consensus       122 -~~~~~~~~~~~id~lvnnAg~  142 (206)
                       ++..+..+   .+.++-|+|.
T Consensus       119 ~~~~l~~mk---~ga~lIN~aR  137 (188)
T d2naca1         119 NDETLKLFK---RGAYIVNTAR  137 (188)
T ss_dssp             SHHHHTTSC---TTEEEEECSC
T ss_pred             HHHHHHhCC---CCCEEEecCc
Confidence             33333333   3345555543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.06  E-value=0.0061  Score=41.97  Aligned_cols=39  Identities=28%  Similarity=0.294  Sum_probs=32.8

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~   95 (206)
                      +.|.|+ |-+|.++|+.|.++|++|...+|+++..++..+
T Consensus         3 I~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~   41 (165)
T d2f1ka2           3 IGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE   41 (165)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             EEEEee-cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH
Confidence            566666 899999999999999999999999877665443

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.03  E-value=0.014  Score=41.62  Aligned_cols=37  Identities=16%  Similarity=0.088  Sum_probs=33.2

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      ++.||++.|.|. |.||+.+++.+...|++|+..++..
T Consensus        42 ~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          42 ELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             CGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccceeeeeeec-ccccccccccccccceeeeccCCcc
Confidence            477999999998 5899999999999999999998854

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0036  Score=50.28  Aligned_cols=64  Identities=14%  Similarity=0.225  Sum_probs=50.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEEEEE
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIKSVV  110 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~  110 (206)
                      +++.+|+|.|+ ||+|.++++.|+..|. ++.++|.+                   ..+.+.+++.++..+++.++....
T Consensus        35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~  113 (426)
T d1yovb1          35 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF  113 (426)
T ss_dssp             HHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred             HhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence            45778999999 6899999999999997 88888774                   245677778888888888777776


Q ss_pred             EecCC
Q 028656          111 VDFSG  115 (206)
Q Consensus       111 ~d~~~  115 (206)
                      .++.+
T Consensus       114 ~~i~~  118 (426)
T d1yovb1         114 NKIQD  118 (426)
T ss_dssp             SCGGG
T ss_pred             ccccc
Confidence            65544

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0087  Score=41.47  Aligned_cols=46  Identities=22%  Similarity=0.424  Sum_probs=39.7

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      ..++.||+++|.|-|.-+|+.++..|.++|++|..+......+++.
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~~   77 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHH   77 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHH
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHHH
Confidence            4567899999999999999999999999999999988766555443

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.89  E-value=0.019  Score=40.66  Aligned_cols=37  Identities=11%  Similarity=0.093  Sum_probs=32.9

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      +++||++.|.|. |.||+++++.+...|.+|...++..
T Consensus        44 ~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~   80 (191)
T d1gdha1          44 KLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHR   80 (191)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred             eecccceEEeec-ccchHHHHHHHHhhccccccccccc
Confidence            367999999998 5899999999999999999998754

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0067  Score=42.29  Aligned_cols=45  Identities=16%  Similarity=0.184  Sum_probs=40.0

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHH
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKD   92 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~   92 (206)
                      ..+++||.++|.|-|.=+|+.++..|+++|++|..+......+.+
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~   78 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDE   78 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHH
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHHH
Confidence            456889999999999999999999999999999999887766553

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.0061  Score=43.21  Aligned_cols=102  Identities=15%  Similarity=0.156  Sum_probs=60.9

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh-------HHHHHHHHHHhcCCceEEEEEEecCCCchHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK-------LKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGV  121 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  121 (206)
                      .+++++++.|.|. |.||+.+++.+...|++|...++....       .+.+.+-++    ...+..+.+..+++-...+
T Consensus        40 ~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~ell~----~sDii~i~~plt~~T~~li  114 (188)
T d1sc6a1          40 FEARGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLN----MSDVVSLHVPENPSTKNMM  114 (188)
T ss_dssp             CCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHH----HCSEEEECCCSSTTTTTCB
T ss_pred             ccccceEEEEeec-ccchhhhhhhcccccceEeeccccccchhhhhhhhhhHHHHHh----hccceeecccCCcchhhhc
Confidence            4578999999976 699999999999999999999875321       111222222    2456667777765432222


Q ss_pred             -HHHHHHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhh
Q 028656          122 -ERIKEAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVN  165 (206)
Q Consensus       122 -~~~~~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N  165 (206)
                       ++..+..++-.  ++|| ++...       -.+.+++.+.++-|
T Consensus       115 ~~~~l~~mk~~a--~lIN-~aRG~-------lvde~aL~~aL~~~  149 (188)
T d1sc6a1         115 GAKEISLMKPGS--LLIN-ASRGT-------VVDIPALADALASK  149 (188)
T ss_dssp             CHHHHHHSCTTE--EEEE-CSCSS-------SBCHHHHHHHHHTT
T ss_pred             cHHHHhhCCCCC--EEEE-cCcHH-------hhhhHHHHHHHHcC
Confidence             45555555422  4555 44332       23455555554443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.67  E-value=0.073  Score=36.67  Aligned_cols=76  Identities=17%  Similarity=0.233  Sum_probs=53.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      +..+++|.|++ -.|++-++...+.|++|.+.|.+.++++++......    . +.   .-..++     +.+.+.+.+-
T Consensus        31 ~pa~V~ViGaG-vaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~----~-~~---~~~~~~-----~~l~~~~~~a   96 (168)
T d1pjca1          31 KPGKVVILGGG-VVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS----R-VE---LLYSNS-----AEIETAVAEA   96 (168)
T ss_dssp             CCCEEEEECCS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG----G-SE---EEECCH-----HHHHHHHHTC
T ss_pred             CCcEEEEECCC-hHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc----c-ce---eehhhh-----hhHHHhhccC
Confidence            46789999885 679999999999999999999999998876655432    1 11   112222     3444555554


Q ss_pred             CccEEEEecccc
Q 028656          132 DVGVLINNVGIS  143 (206)
Q Consensus       132 ~id~lvnnAg~~  143 (206)
                      |  ++|.++=+-
T Consensus        97 D--ivI~aalip  106 (168)
T d1pjca1          97 D--LLIGAVLVP  106 (168)
T ss_dssp             S--EEEECCCCT
T ss_pred             c--EEEEeeecC
Confidence            5  899987654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.0068  Score=41.47  Aligned_cols=34  Identities=24%  Similarity=0.218  Sum_probs=30.6

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK   89 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~   89 (206)
                      ++.|.|+ |.+|..++..|++.|++|.+++|+.++
T Consensus         2 kI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           2 KITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             EEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            4788888 899999999999999999999998753

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.019  Score=43.44  Aligned_cols=26  Identities=15%  Similarity=0.227  Sum_probs=22.8

Q ss_pred             CCChHHHHHHHHHHHCCCcEEEEEcC
Q 028656           61 PTDGIGKSFAFQLAKTGLNLVLVGRN   86 (206)
Q Consensus        61 as~giG~~~a~~l~~~g~~V~~~~r~   86 (206)
                      .||..|.++|+++..+|++|+++.+.
T Consensus        44 SSGk~G~alA~~~~~~Ga~V~li~g~   69 (290)
T d1p9oa_          44 SSGRRGATSAEAFLAAGYGVLFLYRA   69 (290)
T ss_dssp             CCCHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CchHHHHHHHHHHHHcCCEEEEEecC
Confidence            35789999999999999999998754

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=95.37  E-value=0.034  Score=40.52  Aligned_cols=48  Identities=19%  Similarity=0.171  Sum_probs=41.2

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHH
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~   97 (206)
                      .+++|++++|-|- |.+|..+|+.|.+.|++|+..+.+...++....+.
T Consensus        35 ~~l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~   82 (230)
T d1leha1          35 DSLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEE   82 (230)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhc
Confidence            4467999999987 58999999999999999999999988877766543

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.35  E-value=0.017  Score=40.14  Aligned_cols=39  Identities=28%  Similarity=0.400  Sum_probs=35.2

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN   86 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~   86 (206)
                      ..+++||+++|.|-|.=+|+-++..|+++|++|..+..+
T Consensus        24 g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          24 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             cCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            347889999999999999999999999999999887654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.23  E-value=0.013  Score=40.80  Aligned_cols=36  Identities=17%  Similarity=0.359  Sum_probs=32.0

Q ss_pred             CCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHH
Q 028656           61 PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDS   96 (206)
Q Consensus        61 as~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~   96 (206)
                      |.|-+|.++|+.|+++|++|.+.+|++++.+++.++
T Consensus         8 GlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~   43 (178)
T d1pgja2           8 GLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA   43 (178)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred             eehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc
Confidence            457899999999999999999999999988877655

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.22  E-value=0.012  Score=41.76  Aligned_cols=39  Identities=23%  Similarity=0.314  Sum_probs=33.0

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS   94 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~   94 (206)
                      .+.|.||+ ..|.++|..|++.|++|.+.+|+++..+++.
T Consensus         9 KI~ViGaG-~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~   47 (189)
T d1n1ea2           9 KAVVFGSG-AFGTALAMVLSKKCREVCVWHMNEEEVRLVN   47 (189)
T ss_dssp             EEEEECCS-HHHHHHHHHHHTTEEEEEEECSCHHHHHHHH
T ss_pred             eEEEECCC-HHHHHHHHHHHHcCCeEEEEEecHHHHHHHh
Confidence            57788874 6899999999999999999999987766544

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.034  Score=38.25  Aligned_cols=42  Identities=24%  Similarity=0.336  Sum_probs=37.3

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK   89 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~   89 (206)
                      .+..+.||+++|.|-+ -+|+.+|+.+...|++|++++.++.+
T Consensus        18 t~~~l~Gk~v~V~GyG-~iG~g~A~~~rg~G~~V~v~e~dp~~   59 (163)
T d1li4a1          18 TDVMIAGKVAVVAGYG-DVGKGCAQALRGFGARVIITEIDPIN   59 (163)
T ss_dssp             HCCCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             hCceecCCEEEEeccc-cccHHHHHHHHhCCCeeEeeecccch
Confidence            4567899999999875 89999999999999999999999844

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=94.83  E-value=0.027  Score=38.10  Aligned_cols=40  Identities=18%  Similarity=0.304  Sum_probs=33.5

Q ss_pred             EEEECCCChHHHHHHHHHHHCC-CcEEEEEcChhhHHHHHHH
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDS   96 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~   96 (206)
                      +.+.|+ |-+|.++++.|.+.| ++|.+.+|++++.+++.++
T Consensus         3 I~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~   43 (152)
T d1yqga2           3 VYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE   43 (152)
T ss_dssp             EEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH
T ss_pred             EEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh
Confidence            556666 899999999998877 8999999999888776655

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.65  E-value=0.037  Score=39.18  Aligned_cols=85  Identities=9%  Similarity=0.113  Sum_probs=63.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .+..+=+|.|+||...++.+.+ . +.+|+.+|++++.++...+.++..  +.++.++..+..+     +....+.++.-
T Consensus        24 ~~~~lD~t~G~Gghs~~il~~~-~-~~~vi~~D~d~~~l~~a~~~l~~~--~~r~~~~~~~f~~-----~~~~~~~~~~~   94 (192)
T d1m6ya2          24 EKIILDCTVGEGGHSRAILEHC-P-GCRIIGIDVDSEVLRIAEEKLKEF--SDRVSLFKVSYRE-----ADFLLKTLGIE   94 (192)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHC-T-TCEEEEEESCHHHHHHHHHHTGGG--TTTEEEEECCGGG-----HHHHHHHTTCS
T ss_pred             CCEEEEecCCCcHHHHHHHhcC-C-CCeEEEeechHHHHHHHHHhhccc--cccccchhHHHhh-----HHHHHHHcCCC
Confidence            3566777888899988888876 3 568999999999988888777552  5667888877654     25555666544


Q ss_pred             CccEEEEeccccCC
Q 028656          132 DVGVLINNVGISYP  145 (206)
Q Consensus       132 ~id~lvnnAg~~~~  145 (206)
                      .+|.++...|++..
T Consensus        95 ~vdgIl~DlGvSs~  108 (192)
T d1m6ya2          95 KVDGILMDLGVSTY  108 (192)
T ss_dssp             CEEEEEEECSCCHH
T ss_pred             CcceeeeccchhHh
Confidence            68899999998653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.65  E-value=0.029  Score=36.56  Aligned_cols=35  Identities=23%  Similarity=0.173  Sum_probs=30.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      ++|+++|.|| |-+|.++|..|++.|.+|.++.+.+
T Consensus        29 ~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecC
Confidence            4678888877 5999999999999999999998864

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.61  E-value=0.13  Score=33.24  Aligned_cols=34  Identities=18%  Similarity=0.228  Sum_probs=29.7

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      -|.++|.|| |-||.++|..|++.|.+|.++.+.+
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCcceeEEEecc
Confidence            367888887 5899999999999999999998864

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.57  E-value=0.039  Score=37.79  Aligned_cols=40  Identities=28%  Similarity=0.435  Sum_probs=32.4

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC--cEEEEEcChhhHHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~   95 (206)
                      .+.|.|. |-+|.++|+.|.+.|.  +|...+++.+.++...+
T Consensus         3 ~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~   44 (171)
T d2g5ca2           3 NVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD   44 (171)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH
T ss_pred             EEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH
Confidence            5788876 8999999999999986  68888998877665443

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.54  E-value=0.058  Score=34.77  Aligned_cols=34  Identities=12%  Similarity=0.173  Sum_probs=29.8

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .|+++|.|| |-+|.++|..|++.|.+|.++.|.+
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence            467888888 5899999999999999999999864

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.54  E-value=0.28  Score=34.41  Aligned_cols=58  Identities=19%  Similarity=0.248  Sum_probs=44.3

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      +.+|+=.|+++|.   ++..+++.|++|+.+|.+++.++.+++.+...  +..+..+..|..+
T Consensus        38 ~~~ILDiGcG~G~---~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~--~~~~~~~~~d~~~   95 (226)
T d1ve3a1          38 RGKVLDLACGVGG---FSFLLEDYGFEVVGVDISEDMIRKAREYAKSR--ESNVEFIVGDARK   95 (226)
T ss_dssp             CCEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCCEEEECCTTS
T ss_pred             CCEEEEECCCcch---hhhhHhhhhcccccccccccchhhhhhhhccc--ccccccccccccc
Confidence            4568899998874   66788899999999999998888887777664  3344556666654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.53  E-value=0.032  Score=36.32  Aligned_cols=36  Identities=28%  Similarity=0.360  Sum_probs=31.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD   88 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~   88 (206)
                      .+++++|.|| |-+|.++|..|+++|.+|.++.+.+.
T Consensus        29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          29 PQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECc-chhHHHHHHHhhcccceEEEEeeccc
Confidence            3578888888 59999999999999999999998753

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.49  E-value=0.038  Score=37.74  Aligned_cols=39  Identities=18%  Similarity=0.191  Sum_probs=32.2

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS   94 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~   94 (206)
                      ++-+.|- |-+|.++|+.|+++|++|.+.+|+.++.+.+.
T Consensus         3 kIg~IGl-G~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~   41 (162)
T d3cuma2           3 QIAFIGL-GHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV   41 (162)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred             EEEEEEE-HHHHHHHHHHHHHCCCeEEEEECchhhhhhhh
Confidence            3555554 78999999999999999999999987766544

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.43  E-value=0.1  Score=33.54  Aligned_cols=34  Identities=18%  Similarity=0.136  Sum_probs=30.0

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .+.++|.|| |-||.++|..|++.|.+|.++.+..
T Consensus        22 p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeec
Confidence            477888888 5899999999999999999998864

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.34  E-value=0.026  Score=38.57  Aligned_cols=39  Identities=33%  Similarity=0.489  Sum_probs=32.9

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~   95 (206)
                      +-|.|. |-+|..+|+.|++.|++|.+.+|++++.+++.+
T Consensus         3 IgiIGl-G~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~   41 (161)
T d1vpda2           3 VGFIGL-GIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA   41 (161)
T ss_dssp             EEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             EEEEeh-hHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHH
Confidence            455555 789999999999999999999999988776553

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.32  E-value=0.031  Score=40.33  Aligned_cols=33  Identities=30%  Similarity=0.448  Sum_probs=28.9

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN   86 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~   86 (206)
                      .|.|+|.|| |-.|.+.|.+|+++|++|.+++|+
T Consensus         6 ~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           6 QKRVVVLGS-GVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCC
Confidence            456888888 478999999999999999999985

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.32  E-value=0.026  Score=38.25  Aligned_cols=41  Identities=15%  Similarity=0.335  Sum_probs=34.2

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHH
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~   97 (206)
                      +.+.| .|-+|.++++.|.+.|+++++.+|+.++.+++.++.
T Consensus         3 Ig~IG-~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~   43 (152)
T d2ahra2           3 IGIIG-VGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL   43 (152)
T ss_dssp             EEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH
T ss_pred             EEEEe-ccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc
Confidence            44554 579999999999999999999999998888776654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.32  E-value=0.044  Score=35.20  Aligned_cols=34  Identities=18%  Similarity=0.181  Sum_probs=30.2

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .|.++|.|| |-+|.++|..|++.|.+|.++.|.+
T Consensus        22 p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          22 PKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECC-CccceeeeeeecccccEEEEEEecc
Confidence            377888888 5899999999999999999998865

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.086  Score=39.83  Aligned_cols=61  Identities=20%  Similarity=0.160  Sum_probs=45.2

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      .+||+|+-.|++.|+   ++..+++.|+ +|+.++.++. .....+...+.+...++.++..|+.+
T Consensus        34 ~~~~~VLDiGcG~G~---lsl~aa~~Ga~~V~aid~s~~-~~~a~~~~~~~~~~~~i~~~~~~~~~   95 (311)
T d2fyta1          34 FKDKVVLDVGCGTGI---LSMFAAKAGAKKVLGVDQSEI-LYQAMDIIRLNKLEDTITLIKGKIEE   95 (311)
T ss_dssp             TTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEESSTH-HHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             CCcCEEEEECCCCCH---HHHHHHHcCCCEEEEEeCHHH-HHHHHHHHHHhCCCccceEEEeeHHH
Confidence            469999999999885   5666778887 6888998875 34455555555566778888888775

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.086  Score=33.76  Aligned_cols=33  Identities=18%  Similarity=0.099  Sum_probs=28.9

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      |+++|.|| |-+|.++|..|++.|.+|.++.|.+
T Consensus        22 ~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEECC-ChhhHHHHHHhhccccEEEEEeecc
Confidence            56778777 5899999999999999999999864

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.88  E-value=0.41  Score=33.57  Aligned_cols=76  Identities=16%  Similarity=0.193  Sum_probs=53.0

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      +++|++|+=.|+++|   .++.+++.+|+ +|+.++.+++.++.+.+.++..  +....++..|..+.            
T Consensus        44 dl~g~~vLDlg~GtG---~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~--~~~~~~~~~d~~~~------------  106 (201)
T d1wy7a1          44 DIEGKVVADLGAGTG---VLSYGALLLGAKEVICVEVDKEAVDVLIENLGEF--KGKFKVFIGDVSEF------------  106 (201)
T ss_dssp             SSTTCEEEEETCTTC---HHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGG--TTSEEEEESCGGGC------------
T ss_pred             CCCCCEEEECcCcch---HHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHc--CCCceEEECchhhh------------
Confidence            456999999998877   23344567786 7999999998888887776653  44556666665432            


Q ss_pred             cCCCccEEEEecccc
Q 028656          129 EGLDVGVLINNVGIS  143 (206)
Q Consensus       129 ~~~~id~lvnnAg~~  143 (206)
                      +. ++|++|.|....
T Consensus       107 ~~-~fD~Vi~nPP~~  120 (201)
T d1wy7a1         107 NS-RVDIVIMNPPFG  120 (201)
T ss_dssp             CC-CCSEEEECCCCS
T ss_pred             CC-cCcEEEEcCccc
Confidence            22 467999987654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.82  E-value=0.27  Score=37.37  Aligned_cols=83  Identities=13%  Similarity=0.205  Sum_probs=54.5

Q ss_pred             CCcEEEEECCC-ChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           52 YGSWALVTGPT-DGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas-~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      .|++|+=.|++ |+++.+    ++..|+ +|+.++.++..++.+.+.++..+-..++.++..|+.    +........  
T Consensus       145 ~g~~VLDl~~g~G~~si~----~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~----~~~~~~~~~--  214 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIH----AAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAF----EEMEKLQKK--  214 (324)
T ss_dssp             TTCEEEETTCTTTHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH----HHHHHHHHT--
T ss_pred             CCCeeecccCcccchhhh----hhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhh----hhhHHHHhc--
Confidence            47788877776 444443    445676 799999999999988888877655556766665543    222333222  


Q ss_pred             CCCccEEEEeccccC
Q 028656          130 GLDVGVLINNVGISY  144 (206)
Q Consensus       130 ~~~id~lvnnAg~~~  144 (206)
                      +..+|++|.++....
T Consensus       215 ~~~fD~Vi~DpP~~~  229 (324)
T d2as0a2         215 GEKFDIVVLDPPAFV  229 (324)
T ss_dssp             TCCEEEEEECCCCSC
T ss_pred             cCCCCchhcCCcccc
Confidence            225779998875443

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.042  Score=35.82  Aligned_cols=33  Identities=21%  Similarity=0.196  Sum_probs=29.7

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      |+++|.||+ -+|.++|..|++.|.+|.++.|++
T Consensus        23 k~vvIvGgG-~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAG-YIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEEcCC-ccHHHHHHHHhcCCcEEEEEeecc
Confidence            678888885 799999999999999999999864

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.74  E-value=0.35  Score=33.03  Aligned_cols=34  Identities=15%  Similarity=-0.042  Sum_probs=23.2

Q ss_pred             EEEECC-CChHHHHHHHHHHHC----CCcEEEEEcChhh
Q 028656           56 ALVTGP-TDGIGKSFAFQLAKT----GLNLVLVGRNPDK   89 (206)
Q Consensus        56 vlItGa-s~giG~~~a~~l~~~----g~~V~~~~r~~~~   89 (206)
                      +.|.|| +.|.+..++.-+...    ..++++.|.++++
T Consensus         4 I~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~   42 (169)
T d1s6ya1           4 IATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGK   42 (169)
T ss_dssp             EEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGH
T ss_pred             EEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccH
Confidence            555665 567777777766643    2489999998754

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.63  E-value=0.042  Score=35.63  Aligned_cols=34  Identities=29%  Similarity=0.392  Sum_probs=29.8

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      +|.++|.|| |-+|.++|..|++.|.+|.++.|++
T Consensus        32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECC-cHHHHHHHHHhhcccceEEEEeccc
Confidence            467888877 5899999999999999999998865

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.57  E-value=0.038  Score=40.51  Aligned_cols=34  Identities=24%  Similarity=0.305  Sum_probs=29.1

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      +|+|+|.||+ --|.+.|.+|+++|++|.++.++.
T Consensus         1 ~KkV~IIGaG-~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAG-VSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCS-HHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcC-HHHHHHHHHHHhCCCCEEEEeCCC
Confidence            5789999886 458999999999999999998753

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.52  E-value=0.041  Score=38.16  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=29.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP   87 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~   87 (206)
                      .+|+|+|.||+ -.|.+.|.+|+++|+ .|.+..|+.
T Consensus         3 ~~~kVaIIGaG-paGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           3 YSAKIALLGAG-PASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GGCCEEEECCS-HHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCCEEEEECCh-HHHHHHHHHHHHCCCCeEEEEEecC
Confidence            36788888884 779999999999998 499998864

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.43  E-value=0.16  Score=32.31  Aligned_cols=34  Identities=21%  Similarity=0.263  Sum_probs=29.3

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .|+++|.|| |-+|.++|..|++.|.+|.++.+.+
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHhhcccceEEEeeec
Confidence            367888877 5899999999999999999998864

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.42  E-value=0.71  Score=31.41  Aligned_cols=118  Identities=13%  Similarity=0.121  Sum_probs=59.7

Q ss_pred             EEEEECCCChHHHHHHHHHHH-C----CCcEEEEEcChhhHHHHHHHHHHh----cCCceEEEEEEecCCCchHHHHHHH
Q 028656           55 WALVTGPTDGIGKSFAFQLAK-T----GLNLVLVGRNPDKLKDVSDSIQAK----YAKTQIKSVVVDFSGDLDEGVERIK  125 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~-~----g~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~  125 (206)
                      .+.|.||++.....+...+.. .    +.++++.|.++++++...+.++..    +.+.++... .   |        -.
T Consensus         5 KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---d--------~~   72 (167)
T d1u8xx1           5 SIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT-T---D--------PE   72 (167)
T ss_dssp             EEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE-S---C--------HH
T ss_pred             eEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec-C---C--------hh
Confidence            466667765322223333332 2    248999999999887655554332    122222211 1   1        12


Q ss_pred             HHhcCCCccEEEEeccccCCcccccccCCHHHHHHHHhhhh----------------hHHHHHHHHHhhhhHhCCCCceE
Q 028656          126 EAIEGLDVGVLINNVGISYPYARFFHEVDQVLLKNLIKVNV----------------EGTTKVTQAVLPGMLKRKKGLSM  189 (206)
Q Consensus       126 ~~~~~~~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~N~----------------~g~~~~~~~~~~~~~~~~~g~~i  189 (206)
                      +.+.+-|  ++|+.||.....     ..+   -++.+..|+                .-...+.+.+.+.+.+.....-+
T Consensus        73 eal~~AD--~Vvitag~~~~~-----g~~---rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~l  142 (167)
T d1u8xx1          73 EAFTDVD--FVMAHIRVGKYA-----MRA---LDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWM  142 (167)
T ss_dssp             HHHSSCS--EEEECCCTTHHH-----HHH---HHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred             hccCCCC--EEEECCCcCCCC-----cee---HHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEE
Confidence            3344435  999999875421     111   122333332                22345566777777666554425


Q ss_pred             EEecc
Q 028656          190 LNIGK  194 (206)
Q Consensus       190 v~isS  194 (206)
                      +++|-
T Consensus       143 i~~TN  147 (167)
T d1u8xx1         143 LNYSN  147 (167)
T ss_dssp             EECCS
T ss_pred             EEeCC
Confidence            55554

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=93.38  E-value=0.067  Score=36.90  Aligned_cols=45  Identities=13%  Similarity=-0.017  Sum_probs=38.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQA   99 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~   99 (206)
                      .|.+||..|++.|   ..+..|+++|++|+.+|.++..++...+..++
T Consensus        20 ~~~rvLd~GCG~G---~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~   64 (201)
T d1pjza_          20 PGARVLVPLCGKS---QDMSWLSGQGYHVVGAELSEAAVERYFTERGE   64 (201)
T ss_dssp             TTCEEEETTTCCS---HHHHHHHHHCCEEEEEEECHHHHHHHHHHHCS
T ss_pred             CCCEEEEecCcCC---HHHHHHHHcCCceEeecccHHHHHHHHHHhcc
Confidence            5889999999887   46778999999999999999988887776643

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.19  E-value=0.071  Score=34.23  Aligned_cols=35  Identities=23%  Similarity=0.279  Sum_probs=31.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .+|.++|.|| |-+|.++|..|++.|.+|.++.|.+
T Consensus        21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccc
Confidence            4788998888 5899999999999999999998864

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.16  E-value=0.041  Score=35.99  Aligned_cols=52  Identities=13%  Similarity=0.062  Sum_probs=37.6

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGD  116 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (206)
                      |+++|.|. +.+|++++++|  +|.++++++.++++.+...    ..  +  ..++.+|.++.
T Consensus         1 kHivI~G~-g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~----~~--~--~~~i~Gd~~~~   52 (129)
T d2fy8a1           1 RHVVICGW-SESTLECLREL--RGSEVFVLAEDENVRKKVL----RS--G--ANFVHGDPTRV   52 (129)
T ss_dssp             CCEEEESC-CHHHHHHHHTS--CGGGEEEEESCTTHHHHHH----HT--T--CEEEESCTTSH
T ss_pred             CEEEEECC-CHHHHHHHHHH--cCCCCEEEEcchHHHHHHH----hc--C--ccccccccCCH
Confidence            57888886 67999999998  4667888999888765442    21  2  35667887764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=93.11  E-value=0.068  Score=37.26  Aligned_cols=36  Identities=22%  Similarity=0.243  Sum_probs=31.6

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .+.|+|+|.||+ --|.+.|..++++|++|++..++.
T Consensus        41 ~~~k~V~IIGaG-PAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGAG-PAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECCS-HHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCcEEEEECcc-HHHHHHHHHHHhhccceEEEeccC
Confidence            467899999985 669999999999999999999863

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.07  E-value=0.048  Score=39.98  Aligned_cols=31  Identities=35%  Similarity=0.433  Sum_probs=27.2

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      |+|.|| |-.|.++|.+|+++|.+|++++++.
T Consensus         7 vvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGG-GIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            677777 5889999999999999999999864

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.99  E-value=0.39  Score=31.01  Aligned_cols=34  Identities=21%  Similarity=0.138  Sum_probs=30.0

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .+.++|.|| |-||.++|..|++.|.+|.++.+.+
T Consensus        26 p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeec
Confidence            478888888 5999999999999999999998754

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.94  E-value=0.8  Score=34.44  Aligned_cols=81  Identities=10%  Similarity=-0.005  Sum_probs=51.6

Q ss_pred             CCcEEEEECCCCh-HHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCC-ceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           52 YGSWALVTGPTDG-IGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAK-TQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        52 ~~k~vlItGas~g-iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      ++++|+=..+.+| ++.    +++..|++|+.++.+...++.+.+.+...+.+ .++.++..|+.    +.++.....-.
T Consensus       132 ~~~rVLdlf~~tG~~sl----~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~----~~l~~~~~~~~  203 (309)
T d2igta1         132 RPLKVLNLFGYTGVASL----VAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM----KFIQREERRGS  203 (309)
T ss_dssp             SCCEEEEETCTTCHHHH----HHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH----HHHHHHHHHTC
T ss_pred             CCCeEEEecCCCcHHHH----HHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHH----HhHHHHhhcCC
Confidence            4677777766655 333    44678999999999999988888877665433 35666655543    33333333323


Q ss_pred             CCCccEEEEeccc
Q 028656          130 GLDVGVLINNVGI  142 (206)
Q Consensus       130 ~~~id~lvnnAg~  142 (206)
                        ..|++|.+.-.
T Consensus       204 --~fD~IilDPP~  214 (309)
T d2igta1         204 --TYDIILTDPPK  214 (309)
T ss_dssp             --CBSEEEECCCS
T ss_pred             --CCCEEEECCCc
Confidence              46689887543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.89  E-value=0.092  Score=34.00  Aligned_cols=32  Identities=28%  Similarity=0.302  Sum_probs=28.3

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN   86 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~   86 (206)
                      +.++|.|| |-||.++|..|.+.|.+|.++.|+
T Consensus        21 ~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence            56778877 589999999999999999999886

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.88  E-value=0.1  Score=35.03  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=28.6

Q ss_pred             CcEEEEE-CCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           53 GSWALVT-GPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        53 ~k~vlIt-Gas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      ++.++|. .+++-+|.++|..|+++|.+|.++.+.+
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            4444544 5668999999999999999999998875

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.79  E-value=0.047  Score=40.38  Aligned_cols=38  Identities=24%  Similarity=0.398  Sum_probs=32.5

Q ss_pred             cCCcEEEEECCCChHHHHH-----HHHHHHCCCcEEEEEcChh
Q 028656           51 KYGSWALVTGPTDGIGKSF-----AFQLAKTGLNLVLVGRNPD   88 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~-----a~~l~~~g~~V~~~~r~~~   88 (206)
                      -.++.++|+.|-||.|+.+     |..|+++|.+|.++|.+++
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            4577788888899999987     7889999999999999864

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.75  E-value=0.076  Score=37.57  Aligned_cols=37  Identities=19%  Similarity=0.188  Sum_probs=30.8

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHH
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDV   93 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~   93 (206)
                      +.|.| .|-+|..+|..|+++|++|+..|.+.++.+++
T Consensus         3 I~ViG-lG~vGl~~a~~la~~g~~V~g~D~n~~~i~~l   39 (202)
T d1mv8a2           3 ISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTKIDLI   39 (202)
T ss_dssp             EEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             EEEEC-CCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHh
Confidence            55664 57999999999999999999999998765544

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.69  E-value=0.4  Score=33.93  Aligned_cols=80  Identities=15%  Similarity=0.028  Sum_probs=53.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|.+|+-.|+++|--.+...+....+.+|+.++.+++..+...+.++..+ -..+.....|..+...          ..-
T Consensus        75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~-~~n~~~~~~d~~~~~~----------~~~  143 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-IENVIFVCGDGYYGVP----------EFS  143 (213)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-CCSEEEEESCGGGCCG----------GGC
T ss_pred             ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc-ccccccccCchHHccc----------ccc
Confidence            47789999999887666655555566699999999998888888887643 2334455555543210          111


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      ..|.++.+++.
T Consensus       144 ~fD~I~~~~~~  154 (213)
T d1dl5a1         144 PYDVIFVTVGV  154 (213)
T ss_dssp             CEEEEEECSBB
T ss_pred             chhhhhhhccH
Confidence            46688877654

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.68  E-value=0.23  Score=37.47  Aligned_cols=61  Identities=13%  Similarity=0.103  Sum_probs=43.8

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      .+|++|+-.|++.|+   ++..+++.|+ +|+.++.++ ....+.+..+..+...++.++..|..+
T Consensus        32 ~~~~~VLDiGcG~G~---ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~n~~~~~v~~~~~~~~~   93 (316)
T d1oria_          32 FKDKVVLDVGSGTGI---LCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEE   93 (316)
T ss_dssp             HTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             CCcCEEEEEecCCcH---HHHHHHHhCCCEEEEEcCcH-HHhhhhhHHHHhCCccccceEeccHHH
Confidence            469999999999885   4566778886 688899775 445555555555555668888777765

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.59  E-value=0.092  Score=34.55  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=30.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .+++++|.|| |-+|.++|..|++.|.+|.++.+.+
T Consensus        34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEECC-chHHHHHHHHHHhhCcceeeeeecc
Confidence            4678888887 5899999999999999999998864

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.54  E-value=0.072  Score=34.56  Aligned_cols=34  Identities=18%  Similarity=0.181  Sum_probs=30.1

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .|.++|.|| |-+|.++|..|++.|.+|.++.|++
T Consensus        25 p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          25 PKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEcc
Confidence            467888888 5999999999999999999998865

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=92.38  E-value=0.6  Score=31.86  Aligned_cols=45  Identities=16%  Similarity=0.198  Sum_probs=28.5

Q ss_pred             EEEEECCC-ChHHHHHHHHHHHC----CCcEEEEEcChhhHHHHHHHHHH
Q 028656           55 WALVTGPT-DGIGKSFAFQLAKT----GLNLVLVGRNPDKLKDVSDSIQA   99 (206)
Q Consensus        55 ~vlItGas-~giG~~~a~~l~~~----g~~V~~~~r~~~~~~~~~~~~~~   99 (206)
                      .+.|.||+ -|...++...++..    +.++++.|+++++++.....++.
T Consensus         4 KI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~   53 (171)
T d1obba1           4 KIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKK   53 (171)
T ss_dssp             EEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHH
Confidence            45666753 23444555556542    45899999999988765555543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=92.34  E-value=0.53  Score=32.60  Aligned_cols=43  Identities=14%  Similarity=0.055  Sum_probs=36.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSD   95 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~   95 (206)
                      ....|+|.||+ -.|++-++.....|++|.+.|.+.++++++.+
T Consensus        28 ~pa~VvViGaG-vaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~   70 (183)
T d1l7da1          28 PPARVLVFGVG-VAGLQAIATAKRLGAVVMATDVRAATKEQVES   70 (183)
T ss_dssp             CCCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred             CCcEEEEEcCc-HHHHHHHHHHHHcCCEEEEEeccHHHHHHHHH
Confidence            35678888884 78999999999999999999999988776554

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=92.24  E-value=0.52  Score=34.44  Aligned_cols=48  Identities=21%  Similarity=0.226  Sum_probs=38.9

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhc
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKY  101 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~  101 (206)
                      ..|++|+=.|+++|+   ++..+++.|++|+.+|.++..++.+++..+..+
T Consensus       119 ~~g~~VLDiGcGsG~---l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~  166 (254)
T d2nxca1         119 RPGDKVLDLGTGSGV---LAIAAEKLGGKALGVDIDPMVLPQAEANAKRNG  166 (254)
T ss_dssp             CTTCEEEEETCTTSH---HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTT
T ss_pred             CccCEEEEcccchhH---HHHHHHhcCCEEEEEECChHHHHHHHHHHHHcC
Confidence            458899999999885   334567789999999999999998888777653

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.19  E-value=0.037  Score=45.38  Aligned_cols=59  Identities=10%  Similarity=0.147  Sum_probs=43.5

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcC-------------------hhhHHHHHHHHHHhcCCceEEEE
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRN-------------------PDKLKDVSDSIQAKYAKTQIKSV  109 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~  109 (206)
                      ++++.+|+|.|+ ||+|.++++-|+..|. ++.++|.+                   ..+.+.+++.+.+.++...+..+
T Consensus        22 ~L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~  100 (529)
T d1yova1          22 ALESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFV  100 (529)
T ss_dssp             HHHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEE
T ss_pred             HHhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEE
Confidence            456889999987 6999999999999996 78887653                   23556666777776665554443

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.96  E-value=0.33  Score=33.47  Aligned_cols=59  Identities=17%  Similarity=0.189  Sum_probs=44.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEec
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF  113 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~  113 (206)
                      .|.+++=.|+++|   .++.++++.+.+|+.++.+++.++.+++.++..+-..++.++..|.
T Consensus        33 ~g~~VLDiGcGsG---~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda   91 (186)
T d1l3ia_          33 KNDVAVDVGCGTG---GVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA   91 (186)
T ss_dssp             TTCEEEEESCTTS---HHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCH
T ss_pred             CCCEEEEEECCeE---cccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECch
Confidence            4777888888866   3344566777899999999999999999888765445677777664

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.95  E-value=1  Score=30.14  Aligned_cols=82  Identities=20%  Similarity=0.197  Sum_probs=48.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc-hHHHHHHHH-Hhc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL-DEGVERIKE-AIE  129 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~-~~~  129 (206)
                      +|+++.|.+.|||.|-..+-.+.+.|.++.  .-+++.    .+++++..+......-.+|+.... .+.+.++.+ -..
T Consensus         2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~--~l~~~t----~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~~~~~   75 (163)
T d2csua3           2 RGNKVAIMTNAGGPGVLTADELDKRGLKLA--TLEEKT----IEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQ   75 (163)
T ss_dssp             SSSEEEEEESCHHHHHHHHHHHHTTTCEEC--CCCHHH----HHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECChHHHHHHHHHHHHcCCccC--CCCHHH----HHHHHHhCCCcccCCCcccccCCCCHHHHHHHHHHHHc
Confidence            588899999999999999999999996553  223333    333433334433344466776322 233333333 334


Q ss_pred             CCCccEEEEe
Q 028656          130 GLDVGVLINN  139 (206)
Q Consensus       130 ~~~id~lvnn  139 (206)
                      +-++|.++..
T Consensus        76 d~~vd~v~v~   85 (163)
T d2csua3          76 DPNVDMLIAI   85 (163)
T ss_dssp             STTCSEEEEE
T ss_pred             CCCcCEEEEe
Confidence            4455566543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.87  E-value=0.12  Score=34.70  Aligned_cols=36  Identities=14%  Similarity=0.114  Sum_probs=28.7

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHH
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKD   92 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~   92 (206)
                      +-|.|. |-+|.++++.|+++|++|...+++.++...
T Consensus         3 IgiIG~-G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~   38 (152)
T d1i36a2           3 VGFIGF-GEVAQTLASRLRSRGVEVVTSLEGRSPSTI   38 (152)
T ss_dssp             EEEESC-SHHHHHHHHHHHHTTCEEEECCTTCCHHHH
T ss_pred             EEEEcH-HHHHHHHHHHHHHCCCeEEEEcCchhHHHH
Confidence            445554 899999999999999999998877655433

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=91.87  E-value=0.097  Score=39.32  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=24.1

Q ss_pred             cEEEEECCCChHHH-----HHHHHHHHCCCcEEEEEcC
Q 028656           54 SWALVTGPTDGIGK-----SFAFQLAKTGLNLVLVGRN   86 (206)
Q Consensus        54 k~vlItGas~giG~-----~~a~~l~~~g~~V~~~~r~   86 (206)
                      |+++|++|++| |.     +++++|.++|++|..++..
T Consensus         1 kkili~~~GtG-GHv~~a~al~~~L~~~G~eV~~i~~~   37 (351)
T d1f0ka_           1 KRLMVMAGGTG-GHVFPGLAVAHHLMAQGWQVRWLGTA   37 (351)
T ss_dssp             CEEEEECCSSH-HHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred             CEEEEEcCCcH-HHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            46677766555 65     6889999999999887654

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.76  E-value=0.081  Score=33.37  Aligned_cols=39  Identities=13%  Similarity=0.031  Sum_probs=31.6

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      ..+.+||+|+|.|++ -=|..+|.++++.+.+++...|..
T Consensus        27 ~~~f~gK~VlVVG~g-~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          27 PELFVGESVLVVGGA-SSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             GGGGTTCCEEEECSS-HHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             hhhcCCCeEEEECCC-CCHHHHHHHHHHhcCEEEEEEecC
Confidence            345779999999997 447889999999988888877765

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.60  E-value=0.61  Score=33.14  Aligned_cols=79  Identities=14%  Similarity=0.175  Sum_probs=56.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|.+|+-.|+++|--.++.-+++  |.+|+.++++++-.+...+.+.+.+ -..+.+...|..+-..          ...
T Consensus        78 ~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g-~~nv~~~~gd~~~g~~----------~~~  144 (215)
T d1jg1a_          78 PGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAG-VKNVHVILGDGSKGFP----------PKA  144 (215)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTT-CCSEEEEESCGGGCCG----------GGC
T ss_pred             ccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcC-CceeEEEECccccCCc----------ccC
Confidence            46789999999998888877776  4679999999888877777777653 3556777777664211          112


Q ss_pred             CccEEEEecccc
Q 028656          132 DVGVLINNVGIS  143 (206)
Q Consensus       132 ~id~lvnnAg~~  143 (206)
                      ..|.++-++++.
T Consensus       145 pfD~Iiv~~a~~  156 (215)
T d1jg1a_         145 PYDVIIVTAGAP  156 (215)
T ss_dssp             CEEEEEECSBBS
T ss_pred             cceeEEeecccc
Confidence            466888777654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.52  E-value=0.29  Score=35.12  Aligned_cols=59  Identities=15%  Similarity=0.117  Sum_probs=46.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      ++++++=.|++.|   ..+..|+++|++|+.++.+++-++.+.+.+...  +.++.+...|+.+
T Consensus        41 ~~~~iLDiGcGtG---~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~--~~~i~~~~~d~~~   99 (251)
T d1wzna1          41 EVRRVLDLACGTG---IPTLELAERGYEVVGLDLHEEMLRVARRKAKER--NLKIEFLQGDVLE   99 (251)
T ss_dssp             CCCEEEEETCTTC---HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCCEEEESCGGG
T ss_pred             CCCEEEEeCCCCC---ccchhhcccceEEEEEeeccccccccccccccc--cccchheehhhhh
Confidence            4678999999887   456778899999999999998888877777664  3456777777765

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=91.47  E-value=0.11  Score=34.98  Aligned_cols=35  Identities=20%  Similarity=0.172  Sum_probs=29.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEcCh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL--NLVLVGRNP   87 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~--~V~~~~r~~   87 (206)
                      .||+++|.||+ -.|.++|..|.+.+.  +|+++++++
T Consensus         1 ~gkrivIvGgG-~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGG-TGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCS-HHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECcc-HHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            48999999995 679999999999874  788887764

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=91.46  E-value=1  Score=30.01  Aligned_cols=44  Identities=20%  Similarity=0.242  Sum_probs=31.7

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHC--CCcEEEEEc--ChhhHHHHHHH
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKT--GLNLVLVGR--NPDKLKDVSDS   96 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~--g~~V~~~~r--~~~~~~~~~~~   96 (206)
                      -|++.|.|+||.||.+...-+.+.  .++|+.++-  |.+.+.+...+
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~e   49 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKR   49 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHH
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHh
Confidence            378999999999999998888764  567777654  34444444433

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=91.33  E-value=1  Score=28.38  Aligned_cols=80  Identities=10%  Similarity=0.124  Sum_probs=52.3

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc-hHHHHHHHHHhcCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL-DEGVERIKEAIEGL  131 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~  131 (206)
                      ||+++|.=-..-+...+...|.+.|++|+....+.+..   .+.+++.  ...+..++.++.+.. -+.++++.+..++.
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~a---l~~~~~~--~~dliilD~~mp~~~G~e~~~~ir~~~~~~   75 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREA---VEKYKEL--KPDIVTMDITMPEMNGIDAIKEIMKIDPNA   75 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHH---HHHHHHH--CCSEEEEECSCGGGCHHHHHHHHHHHCTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHH---HHHHHhc--cCCEEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence            78899998888888888888888999987666655332   2233332  334555665555432 46667777766654


Q ss_pred             CccEEEEe
Q 028656          132 DVGVLINN  139 (206)
Q Consensus       132 ~id~lvnn  139 (206)
                      +  +++..
T Consensus        76 p--vi~ls   81 (118)
T d1u0sy_          76 K--IIVCS   81 (118)
T ss_dssp             C--EEEEE
T ss_pred             c--EEEEE
Confidence            4  56554

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=91.30  E-value=0.12  Score=38.05  Aligned_cols=36  Identities=22%  Similarity=0.189  Sum_probs=31.4

Q ss_pred             ccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEE
Q 028656           48 NLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG   84 (206)
Q Consensus        48 ~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~   84 (206)
                      ..+++|++++|.| .|.+|..+++.|.+.|++|+.++
T Consensus        31 ~~~l~g~~v~IQG-fGnVG~~~a~~L~e~Gakvvavs   66 (255)
T d1bgva1          31 NDTLVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLS   66 (255)
T ss_dssp             TCCSTTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEe
Confidence            3467899999999 57899999999999999988765

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=91.25  E-value=0.25  Score=33.64  Aligned_cols=42  Identities=17%  Similarity=0.261  Sum_probs=37.1

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK   89 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~   89 (206)
                      .+.-+.||+++|.|= |-+|+.+|+.+...|++|+++..++-+
T Consensus        17 t~~~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~DPi~   58 (163)
T d1v8ba1          17 TDFLISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDPIC   58 (163)
T ss_dssp             HCCCCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred             hCceecCCEEEEecc-cccchhHHHHHHhCCCEEEEEecCchh
Confidence            466789999999886 579999999999999999999999844

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=91.23  E-value=0.39  Score=32.73  Aligned_cols=51  Identities=18%  Similarity=0.328  Sum_probs=36.0

Q ss_pred             CCcEEEEECCCCh-HHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceE
Q 028656           52 YGSWALVTGPTDG-IGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQI  106 (206)
Q Consensus        52 ~~k~vlItGas~g-iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~  106 (206)
                      +|++++=.|+++| +|    -+.+.+|++|+.++.++...+.+.+.++..+.+.++
T Consensus        41 ~g~~vLDl~~G~G~~~----i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v   92 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVG----LEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARV   92 (171)
T ss_dssp             TCCEEEEETCSSCHHH----HHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEE
T ss_pred             CCCeEEEeccccchhh----hhhhhccchhhhcccCHHHHhhhhHHHHhhccccce
Confidence            3556665555544 44    356678999999999999998888888776544443

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=91.22  E-value=0.11  Score=38.18  Aligned_cols=30  Identities=33%  Similarity=0.574  Sum_probs=26.2

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcC
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN   86 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~   86 (206)
                      |+|.|| |-.|.++|.+|+++|.+|+++++.
T Consensus         6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCC
Confidence            677776 578999999999999999999874

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=91.19  E-value=0.13  Score=37.01  Aligned_cols=34  Identities=24%  Similarity=0.331  Sum_probs=28.9

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .++|+|.||+ --|..+|..|+++|.+|+++.|+.
T Consensus         4 ~~kV~IiGaG-~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGGS-ISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CSEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECcC-HHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4678888885 558899999999999999999864

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=91.14  E-value=0.16  Score=37.15  Aligned_cols=34  Identities=24%  Similarity=0.355  Sum_probs=30.3

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEE
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVG   84 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~   84 (206)
                      +++|++++|-|- |.+|..+|+.|.+.|++|+.++
T Consensus        28 ~l~g~~v~IqGf-GnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          28 GIEGKTVAIQGM-GNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEee
Confidence            577999999985 7999999999999999998765

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=0.6  Score=33.29  Aligned_cols=81  Identities=14%  Similarity=0.101  Sum_probs=57.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcC----CceEEEEEEecCCCchHHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYA----KTQIKSVVVDFSGDLDEGVERIKEA  127 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~  127 (206)
                      .|.+|+-.|+++|.-.++.-++.....+|+.++++++-.+...+.+++.+.    ...+.....|..+...         
T Consensus        76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~---------  146 (224)
T d1i1na_          76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA---------  146 (224)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG---------
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccc---------
Confidence            478999999999988888888888788999999999888887777765321    2345555556543211         


Q ss_pred             hcCCCccEEEEeccc
Q 028656          128 IEGLDVGVLINNVGI  142 (206)
Q Consensus       128 ~~~~~id~lvnnAg~  142 (206)
                       +.-..|.++.+++.
T Consensus       147 -~~~~fD~I~~~~~~  160 (224)
T d1i1na_         147 -EEAPYDAIHVGAAA  160 (224)
T ss_dssp             -GGCCEEEEEECSBB
T ss_pred             -hhhhhhhhhhhcch
Confidence             11146688877654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=91.07  E-value=0.65  Score=32.72  Aligned_cols=62  Identities=11%  Similarity=0.118  Sum_probs=43.4

Q ss_pred             CCcEEEEECCCCh-HHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEec
Q 028656           52 YGSWALVTGPTDG-IGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF  113 (206)
Q Consensus        52 ~~k~vlItGas~g-iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~  113 (206)
                      .+.+++=.|++.| +...+++++...|++|+.+|.+++-++.+.+.+........+.....|.
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~  101 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI  101 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh
Confidence            3567888888755 4455666555678999999999999998888776654444455444443

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=90.99  E-value=0.11  Score=38.46  Aligned_cols=35  Identities=20%  Similarity=0.277  Sum_probs=29.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      +.|+|+|.||+ --|.+.|.+|+++|++|.++.++.
T Consensus        29 ~pkkV~IIGaG-~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAG-MAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCB-HHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCC-HHHHHHHHHHHHCCCCEEEEeCCC
Confidence            35789999986 558999999999999999998764

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=90.91  E-value=0.16  Score=36.57  Aligned_cols=60  Identities=13%  Similarity=0.009  Sum_probs=46.7

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      ..+++++=.|++.|.   ++..++++|.+|+.+|.+++.++.+.+.....  +..+.++..|+.+
T Consensus        36 ~~~~~vLDiGCG~G~---~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~--~~~v~~~~~d~~~   95 (246)
T d1y8ca_          36 LVFDDYLDLACGTGN---LTENLCPKFKNTWAVDLSQEMLSEAENKFRSQ--GLKPRLACQDISN   95 (246)
T ss_dssp             CCTTEEEEETCTTST---THHHHGGGSSEEEEECSCHHHHHHHHHHHHHT--TCCCEEECCCGGG
T ss_pred             CCCCeEEEEeCcCCH---HHHHHHHhCCccEeeccchhhhhhcccccccc--Cccceeeccchhh
Confidence            457789999999884   78889999999999999999888877777654  3345666666654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=90.84  E-value=0.7  Score=34.82  Aligned_cols=83  Identities=13%  Similarity=0.115  Sum_probs=53.0

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .+|++|+=.+++.| |.++  +++..+.+|+.++.++..++.+.+.++..+- ..+.++..|..+    ..+..... + 
T Consensus       144 ~~g~rVLDl~~gtG-~~s~--~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~----~~~~~~~~-~-  213 (318)
T d1wxxa2         144 FRGERALDVFSYAG-GFAL--HLALGFREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFD----LLRRLEKE-G-  213 (318)
T ss_dssp             CCEEEEEEETCTTT-HHHH--HHHHHEEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHH----HHHHHHHT-T-
T ss_pred             hCCCeeeccCCCCc-HHHH--HHHhcCCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHH----HhhhhHhh-h-
Confidence            35888888877755 3333  3455677999999999999998888877543 235556555432    22333222 2 


Q ss_pred             CCccEEEEecccc
Q 028656          131 LDVGVLINNVGIS  143 (206)
Q Consensus       131 ~~id~lvnnAg~~  143 (206)
                      ...|.++.++...
T Consensus       214 ~~fD~Vi~DpP~~  226 (318)
T d1wxxa2         214 ERFDLVVLDPPAF  226 (318)
T ss_dssp             CCEEEEEECCCCS
T ss_pred             cCCCEEEEcCCcc
Confidence            2577998887543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.81  E-value=1  Score=31.01  Aligned_cols=76  Identities=17%  Similarity=0.138  Sum_probs=53.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhc-CCceEEEEEEecCCCchHHHHHHHHHhcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKY-AKTQIKSVVVDFSGDLDEGVERIKEAIEG  130 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  130 (206)
                      .+++|+=.|+++|   .++..+++.+.+|..++.++...+.+.+.++..+ .+..+.+...|..+..+           +
T Consensus        52 ~~~~VLDiGcG~G---~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~-----------~  117 (194)
T d1dusa_          52 KDDDILDLGCGYG---VIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK-----------D  117 (194)
T ss_dssp             TTCEEEEETCTTS---HHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT-----------T
T ss_pred             CCCeEEEEeecCC---hhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc-----------c
Confidence            4778888888877   4455677788899999999988888777776543 24467778878764311           1


Q ss_pred             CCccEEEEecc
Q 028656          131 LDVGVLINNVG  141 (206)
Q Consensus       131 ~~id~lvnnAg  141 (206)
                      ...|.++.|..
T Consensus       118 ~~fD~Ii~~~p  128 (194)
T d1dusa_         118 RKYNKIITNPP  128 (194)
T ss_dssp             SCEEEEEECCC
T ss_pred             CCceEEEEccc
Confidence            24678887743

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.71  E-value=0.34  Score=34.05  Aligned_cols=71  Identities=20%  Similarity=0.239  Sum_probs=47.9

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      ++.||+|+=.|+++|+   ++..++..|+ +|+.++.+++.++.+.+.+    .  .+.+..+|+.+-            
T Consensus        46 dl~Gk~VLDlGcGtG~---l~i~a~~~ga~~V~~vDid~~a~~~ar~N~----~--~~~~~~~D~~~l------------  104 (197)
T d1ne2a_          46 NIGGRSVIDAGTGNGI---LACGSYLLGAESVTAFDIDPDAIETAKRNC----G--GVNFMVADVSEI------------  104 (197)
T ss_dssp             SSBTSEEEEETCTTCH---HHHHHHHTTBSEEEEEESCHHHHHHHHHHC----T--TSEEEECCGGGC------------
T ss_pred             CCCCCEEEEeCCCCcH---HHHHHHHcCCCcccccccCHHHHHHHHHcc----c--cccEEEEehhhc------------
Confidence            4569999999999883   3345677776 6999999987766544432    2  345566666432            


Q ss_pred             cCCCccEEEEeccc
Q 028656          129 EGLDVGVLINNVGI  142 (206)
Q Consensus       129 ~~~~id~lvnnAg~  142 (206)
                      ++ ++|++|.|...
T Consensus       105 ~~-~fD~Vi~NPPf  117 (197)
T d1ne2a_         105 SG-KYDTWIMNPPF  117 (197)
T ss_dssp             CC-CEEEEEECCCC
T ss_pred             CC-cceEEEeCccc
Confidence            22 57799988654

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=90.66  E-value=0.081  Score=37.18  Aligned_cols=31  Identities=19%  Similarity=0.219  Sum_probs=27.2

Q ss_pred             cEEEEECCCChHHHH-----HHHHHHHCCCcEEEEE
Q 028656           54 SWALVTGPTDGIGKS-----FAFQLAKTGLNLVLVG   84 (206)
Q Consensus        54 k~vlItGas~giG~~-----~a~~l~~~g~~V~~~~   84 (206)
                      |++.|||.++|.|+.     +|+.|+++|.+|.+++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            789999999999986     5677889999999986

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.66  E-value=0.24  Score=35.45  Aligned_cols=36  Identities=22%  Similarity=0.241  Sum_probs=31.1

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      ..+|.++|.||+ --|.+.|.+++++|++|.+..++.
T Consensus        47 ~~~k~VvIIGaG-pAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGAG-PSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCceEEEEccc-HHHHHHHHHHHHhccceeeEeecc
Confidence            468999999996 558999999999999999998753

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=90.66  E-value=0.13  Score=38.10  Aligned_cols=32  Identities=22%  Similarity=0.484  Sum_probs=26.9

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP   87 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~   87 (206)
                      .|+|.|| |-+|.++|.+|+++|. +|++++|+.
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            3777777 4899999999999996 699998863

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.60  E-value=0.32  Score=36.40  Aligned_cols=35  Identities=23%  Similarity=0.113  Sum_probs=31.2

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR   85 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r   85 (206)
                      .++|++++|.|- |.+|..+|+.|.+.|++|+.++-
T Consensus        33 ~L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1          33 GFGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             SSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence            577999999998 69999999999999999988763

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.52  E-value=0.38  Score=34.21  Aligned_cols=84  Identities=13%  Similarity=0.094  Sum_probs=55.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      +-|+++=+|...|.......+....|.+|+.++.+++..+...+.++..+-..++..+..|..+    .+..+.+..+..
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e----~l~~l~~~~~~~  131 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD----LIPQLKKKYDVD  131 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH----HGGGHHHHSCCC
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccc----cccchhhccccc
Confidence            4578999999877654433222345789999999998888888888776666778777766543    234444444333


Q ss_pred             CccEEEEe
Q 028656          132 DVGVLINN  139 (206)
Q Consensus       132 ~id~lvnn  139 (206)
                      .+|.++.-
T Consensus       132 ~~D~ifiD  139 (214)
T d2cl5a1         132 TLDMVFLD  139 (214)
T ss_dssp             CEEEEEEC
T ss_pred             ccceeeec
Confidence            45566543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.52  E-value=0.17  Score=38.21  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=29.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      +.|.++|.||+ --|...|.+|+++|++|.++.++.
T Consensus         1 k~KKI~IIGaG-~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAG-FSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCS-HHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCEEEEECCc-HHHHHHHHHHHhCCCCEEEEECCC
Confidence            36789999986 457889999999999999998765

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=90.47  E-value=0.74  Score=33.96  Aligned_cols=80  Identities=13%  Similarity=0.113  Sum_probs=53.2

Q ss_pred             cEEEEECCCCh-HHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           54 SWALVTGPTDG-IGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        54 k~vlItGas~g-iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      ++++-.|+++| |+.+++ +  ..+++|+.++.+++.++-+.+..+..+-..++.....|..+..       .+..+  +
T Consensus       112 ~~vld~g~GsG~i~~~la-~--~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~-------~~~~~--~  179 (271)
T d1nv8a_         112 KTVADIGTGSGAIGVSVA-K--FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF-------KEKFA--S  179 (271)
T ss_dssp             CEEEEESCTTSHHHHHHH-H--HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG-------GGGTT--T
T ss_pred             cEEEEeeeeeehhhhhhh-h--cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccc-------ccccC--c
Confidence            45665566555 554443 2  3577999999999999888888877655567777777766431       11223  4


Q ss_pred             ccEEEEeccccCC
Q 028656          133 VGVLINNVGISYP  145 (206)
Q Consensus       133 id~lvnnAg~~~~  145 (206)
                      +|++|.|......
T Consensus       180 fDlIVsNPPYI~~  192 (271)
T d1nv8a_         180 IEMILSNPPYVKS  192 (271)
T ss_dssp             CCEEEECCCCBCG
T ss_pred             ccEEEEcccccCc
Confidence            5699999876643

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=90.30  E-value=0.64  Score=32.67  Aligned_cols=59  Identities=20%  Similarity=0.055  Sum_probs=42.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS  114 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  114 (206)
                      .+++|+=.|++.|.   .+..++++|.+|+.++.+++.++.+.+.+...+ ...+.+...|..
T Consensus        15 ~~~rVLDiGcG~G~---~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~-~~~i~~~~~d~~   73 (231)
T d1vl5a_          15 GNEEVLDVATGGGH---VANAFAPFVKKVVAFDLTEDILKVARAFIEGNG-HQQVEYVQGDAE   73 (231)
T ss_dssp             SCCEEEEETCTTCH---HHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTT-CCSEEEEECCC-
T ss_pred             CcCEEEEecccCcH---HHHHHHHhCCEEEEEECCHHHHhhhhhcccccc-cccccccccccc
Confidence            36789999998873   356778899999999999988877766665542 344555555544

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.29  E-value=0.8  Score=31.53  Aligned_cols=60  Identities=18%  Similarity=0.268  Sum_probs=43.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      .+++|+=.|++.|   ..+..|+++|++|+.++.+++.++.+.+.....+- ..+.....|+.+
T Consensus        30 ~~grvLDiGcG~G---~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~   89 (198)
T d2i6ga1          30 APGRTLDLGCGNG---RNSLYLAANGYDVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNT   89 (198)
T ss_dssp             CSCEEEEETCTTS---HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTT
T ss_pred             CCCcEEEECCCCC---HHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccc-cchhhhheeccc
Confidence            4567899999766   35678889999999999999888877766655422 234555556554

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.26  E-value=0.14  Score=36.33  Aligned_cols=34  Identities=21%  Similarity=0.405  Sum_probs=29.6

Q ss_pred             CcEEEEECCCChHHHH-----HHHHHHHCCCcEEEEEcC
Q 028656           53 GSWALVTGPTDGIGKS-----FAFQLAKTGLNLVLVGRN   86 (206)
Q Consensus        53 ~k~vlItGas~giG~~-----~a~~l~~~g~~V~~~~r~   86 (206)
                      +|++.|+|+-||.|+.     +|..|+++|.+|.++|-+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D   40 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD   40 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            6899999999999986     566788999999999966

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.17  E-value=0.19  Score=35.96  Aligned_cols=43  Identities=12%  Similarity=-0.049  Sum_probs=36.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~   97 (206)
                      .+++|+..|++.|   ..+..|+++|++|+.+|-+++.++.+.++.
T Consensus        45 ~~~rvLd~GCG~G---~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~   87 (229)
T d2bzga1          45 SGLRVFFPLCGKA---VEMKWFADRGHSVVGVEISELGIQEFFTEQ   87 (229)
T ss_dssp             CSCEEEETTCTTC---THHHHHHHTTCEEEEECSCHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCc---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHh
Confidence            5778999999887   568889999999999999998887766654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.79  E-value=0.18  Score=34.83  Aligned_cols=33  Identities=18%  Similarity=0.371  Sum_probs=28.3

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD   88 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~   88 (206)
                      .+.|.|+ |..|.++|..|++.|.+|.+.+|+.+
T Consensus         2 kI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~   34 (180)
T d1txga2           2 IVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFD   34 (180)
T ss_dssp             EEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGG
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCEEEEEEeccc
Confidence            4667777 68999999999999999999998654

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=89.71  E-value=1.5  Score=33.01  Aligned_cols=82  Identities=13%  Similarity=-0.009  Sum_probs=51.9

Q ss_pred             CCcEEEEECCCCh-HHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcC-CceEEEEEEecCCCchHHHHHHHHHh
Q 028656           52 YGSWALVTGPTDG-IGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYA-KTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        52 ~~k~vlItGas~g-iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      +|++|+=..+..| ++.    +.+..|+ .|+.++.++..++...+.++.++- ..++.++..|+-    +..+.....-
T Consensus       144 ~g~~VLdlf~~~G~~sl----~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~----~~l~~~~~~~  215 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSV----AAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVF----DYFKYARRHH  215 (317)
T ss_dssp             BTCEEEEETCTTTHHHH----HHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHH----HHHHHHHHTT
T ss_pred             CCCceeecCCCCcHHHH----HHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHH----HHHHHHHhhc
Confidence            4788887766644 443    3456677 699999999988888888776543 245666665543    3333333332


Q ss_pred             cCCCccEEEEecccc
Q 028656          129 EGLDVGVLINNVGIS  143 (206)
Q Consensus       129 ~~~~id~lvnnAg~~  143 (206)
                        ...|++|......
T Consensus       216 --~~fD~Ii~DPP~f  228 (317)
T d2b78a2         216 --LTYDIIIIDPPSF  228 (317)
T ss_dssp             --CCEEEEEECCCCC
T ss_pred             --CCCCEEEEcChhh
Confidence              2577998876543

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=89.68  E-value=0.21  Score=33.86  Aligned_cols=33  Identities=18%  Similarity=0.148  Sum_probs=26.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEc
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGR   85 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r   85 (206)
                      +++.|+|.|| |-+|.++|..|.+.|.++.++.+
T Consensus         2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~   34 (185)
T d1q1ra1           2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLV   34 (185)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCCCEEEECC-cHHHHHHHHHHHHcCCceEEEEe
Confidence            4678888888 58999999999999987655543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.65  E-value=0.42  Score=30.24  Aligned_cols=40  Identities=25%  Similarity=0.485  Sum_probs=33.1

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhh
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDK   89 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~   89 (206)
                      +.....++.|.|| |-+|+-++....+.|.++++.+.+++.
T Consensus         7 ~~~~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2           7 LRPAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             TSTTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCCCCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            3445668999996 589999999999999999999988653

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.61  E-value=0.43  Score=31.77  Aligned_cols=77  Identities=16%  Similarity=0.191  Sum_probs=52.4

Q ss_pred             cCCcEEEEECCCCh-HHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           51 KYGSWALVTGPTDG-IGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas~g-iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      ++|++++=.|+++| +|.    +.+.+|+ +|+.++.+++..+.+.+.++..+...++.++..|..    +   .+ +..
T Consensus        13 ~~g~~vlDl~~GtG~~~i----ea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~----~---~l-~~~   80 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAI----EAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAE----R---AI-DCL   80 (152)
T ss_dssp             CCSCEEEEETCTTCHHHH----HHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHH----H---HH-HHB
T ss_pred             CCCCeEEEcCCccCHHHH----HHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccc----c---cc-ccc
Confidence            56888887777755 444    4567886 799999999988888888877655667777776533    1   12 222


Q ss_pred             cCCCccEEEEec
Q 028656          129 EGLDVGVLINNV  140 (206)
Q Consensus       129 ~~~~id~lvnnA  140 (206)
                      . ...|+++.++
T Consensus        81 ~-~~fDiIf~DP   91 (152)
T d2esra1          81 T-GRFDLVFLDP   91 (152)
T ss_dssp             C-SCEEEEEECC
T ss_pred             c-cccceeEech
Confidence            2 2466887654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.36  E-value=0.2  Score=35.08  Aligned_cols=31  Identities=13%  Similarity=0.152  Sum_probs=26.3

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      |+|.|| |--|...|.+|+++|.+|.++.++.
T Consensus         8 viViGa-G~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGT-GITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            677776 4668999999999999999999864

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.32  E-value=0.98  Score=30.99  Aligned_cols=80  Identities=16%  Similarity=0.217  Sum_probs=52.3

Q ss_pred             cCCcEEEEECCC-ChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHh
Q 028656           51 KYGSWALVTGPT-DGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAI  128 (206)
Q Consensus        51 ~~~k~vlItGas-~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  128 (206)
                      ..|++++=..++ |++|.+    .+.+|+ +|+.++.+.+..+.+.+.++..+....+.+...|+.    +.++...+. 
T Consensus        40 ~~~~~vLDlfaGsG~~g~e----a~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~----~~l~~~~~~-  110 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIE----AVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN----RALEQFYEE-  110 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH----HHHHHHHHT-
T ss_pred             cCCCEEEEcccccccccce----eeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccch----hhhhhhccc-
Confidence            357777766655 546654    577888 599999999988888888876655556777766654    333333332 


Q ss_pred             cCCCccEEEEec
Q 028656          129 EGLDVGVLINNV  140 (206)
Q Consensus       129 ~~~~id~lvnnA  140 (206)
                       +...|+++...
T Consensus       111 -~~~fDlIflDP  121 (182)
T d2fhpa1         111 -KLQFDLVLLDP  121 (182)
T ss_dssp             -TCCEEEEEECC
T ss_pred             -CCCcceEEech
Confidence             22466887654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.22  E-value=0.71  Score=34.03  Aligned_cols=46  Identities=15%  Similarity=0.096  Sum_probs=36.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHh
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAK  100 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~  100 (206)
                      .+++|+=.|++.|.   ++..|+++|++|+.+|.+++.++.+.+.....
T Consensus        56 ~~~~vLD~GcG~G~---~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~  101 (292)
T d1xvaa_          56 GCHRVLDVACGTGV---DSIMLVEEGFSVTSVDASDKMLKYALKERWNR  101 (292)
T ss_dssp             TCCEEEESSCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEecCCCcH---HHHHHHHcCCeeeeccCchHHHHHHHHHHHhc
Confidence            36789999998774   56677888999999999998888777666543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=88.95  E-value=0.87  Score=33.29  Aligned_cols=61  Identities=16%  Similarity=0.070  Sum_probs=43.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHC-CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      .+.++|=.|++.|   .++..++++ |++|+.++-++..++...+.....+-..++.+..+|..+
T Consensus        67 ~~~~vLDiGcG~G---~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~  128 (282)
T d2o57a1          67 RQAKGLDLGAGYG---GAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE  128 (282)
T ss_dssp             TTCEEEEETCTTS---HHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred             CCCEEEEeCCCCc---HHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccc
Confidence            4678888888766   245556554 889999999998888777777665545566777666543

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.79  E-value=0.29  Score=31.88  Aligned_cols=32  Identities=22%  Similarity=0.267  Sum_probs=26.8

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEE-EcC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLV-GRN   86 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~-~r~   86 (206)
                      ++.|.|++|.+|+++++.+.++|++++.. +++
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~   34 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN   34 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC
Confidence            48999999999999999888999987654 443

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.74  E-value=0.86  Score=34.27  Aligned_cols=61  Identities=15%  Similarity=0.135  Sum_probs=43.9

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      .+|++|+-.|++.|+   ++..+++.|+ +|+.++.++ ..+.+.+..+..+...++.++..|+.+
T Consensus        37 ~~~~~VLDlGcGtG~---ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~   98 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGI---LSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLED   98 (328)
T ss_dssp             HTTCEEEEETCTTSH---HHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             CCcCEEEEeCCCCCH---HHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhh
Confidence            469999999999874   4556678887 688888774 455555556665556677888777664

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.27  E-value=0.67  Score=30.38  Aligned_cols=28  Identities=21%  Similarity=0.265  Sum_probs=22.9

Q ss_pred             EEEEECCCChHHHHHHHHHHHC-CCcEEE
Q 028656           55 WALVTGPTDGIGKSFAFQLAKT-GLNLVL   82 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~-g~~V~~   82 (206)
                      ++.|.|++|.+|+++++...+. +.+++.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~   29 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSA   29 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEE
Confidence            4789999999999999988764 566554

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=88.08  E-value=0.1  Score=34.88  Aligned_cols=37  Identities=14%  Similarity=0.117  Sum_probs=26.8

Q ss_pred             CCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHH
Q 028656           61 PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSI   97 (206)
Q Consensus        61 as~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~   97 (206)
                      |+|-+|+++++.|.+.+..+.+.+|+.++.+++.++.
T Consensus         6 G~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~   42 (153)
T d2i76a2           6 GTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVY   42 (153)
T ss_dssp             SCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHT
T ss_pred             eCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcc
Confidence            4468999999988665544568899999998887765

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=87.74  E-value=0.87  Score=33.11  Aligned_cols=63  Identities=22%  Similarity=0.317  Sum_probs=46.4

Q ss_pred             CCcEEEEECCCCh-HHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           52 YGSWALVTGPTDG-IGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        52 ~~k~vlItGas~g-iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      .|.+|+=.|+++| +...+|+.+.. +.+|+.++++++.++.+.+.++..+....+.....|+.+
T Consensus        85 pG~rVLEiG~GsG~lt~~la~~v~~-~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~  148 (250)
T d1yb2a1          85 PGMDILEVGVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD  148 (250)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT
T ss_pred             CcCEEEEeeeeCcHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeec
Confidence            5788999998876 44555555433 449999999999999988888775545667777777765

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.54  E-value=0.21  Score=35.42  Aligned_cols=34  Identities=24%  Similarity=0.328  Sum_probs=28.8

Q ss_pred             cEEEEECCCChHHHHH-----HHHHHHCCCcEEEEEcCh
Q 028656           54 SWALVTGPTDGIGKSF-----AFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        54 k~vlItGas~giG~~~-----a~~l~~~g~~V~~~~r~~   87 (206)
                      |++.|+++-||.|+..     |..|+++|.+|.++|-+.
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6899999999999864     667888999999998764

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=87.53  E-value=2.2  Score=26.78  Aligned_cols=79  Identities=18%  Similarity=0.198  Sum_probs=50.2

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCc-hHHHHHHHHHhcCC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDL-DEGVERIKEAIEGL  131 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~  131 (206)
                      +|+++|.=-...+-..+.+.|.+.|++|.......+.+    +.+++.  ...+..++..+.+.. -+.++++.+..++.
T Consensus         1 NkrILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal----~~~~~~--~~dlillD~~mP~~~G~el~~~lr~~~~~~   74 (119)
T d1peya_           1 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQAL----DIVTKE--RPDLVLLDMKIPGMDGIEILKRMKVIDENI   74 (119)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHH----HHHHHH--CCSEEEEESCCTTCCHHHHHHHHHHHCTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHH----HHHHhC--CCCEEEEeccCCCCCHHHHHHHHHHhCCCC
Confidence            57788888888888888888888999987654433333    333332  334556666655543 46667777665544


Q ss_pred             CccEEEEe
Q 028656          132 DVGVLINN  139 (206)
Q Consensus       132 ~id~lvnn  139 (206)
                      +  +++-.
T Consensus        75 p--vi~lt   80 (119)
T d1peya_          75 R--VIIMT   80 (119)
T ss_dssp             E--EEEEE
T ss_pred             c--EEEEe
Confidence            3  55554

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=87.42  E-value=0.22  Score=36.42  Aligned_cols=34  Identities=32%  Similarity=0.517  Sum_probs=27.9

Q ss_pred             cEEEEECCCChHHHHH-----HHHHHHCCCcEEEEEcChh
Q 028656           54 SWALVTGPTDGIGKSF-----AFQLAKTGLNLVLVGRNPD   88 (206)
Q Consensus        54 k~vlItGas~giG~~~-----a~~l~~~g~~V~~~~r~~~   88 (206)
                      |++.|+| -||.|+..     |..|+++|.+|.++|.+++
T Consensus         2 r~Iai~g-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           2 RQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             EEEEEEE-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CEEEEEC-CCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            5778887 88999875     5578899999999999853

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.41  E-value=1.1  Score=28.23  Aligned_cols=34  Identities=21%  Similarity=0.081  Sum_probs=26.6

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHC---CCcEEEEEcCh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKT---GLNLVLVGRNP   87 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~---g~~V~~~~r~~   87 (206)
                      .++++|.|| |.+|.++|..+.+.   |.+|.++.|.+
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            467888888 69999999776654   56799998854

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.31  E-value=1.5  Score=31.02  Aligned_cols=61  Identities=11%  Similarity=-0.076  Sum_probs=40.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEe
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVD  112 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d  112 (206)
                      +-|.++=.|...|.......+-...+.+|+.++.+++..+...+.++..+...++.....|
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gd  119 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKP  119 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEee
Confidence            4678999999877654333222234679999999998877777777655444444444433

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.26  E-value=4.3  Score=29.89  Aligned_cols=42  Identities=14%  Similarity=0.093  Sum_probs=30.4

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHC-C-CcEEEEEcChhhHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKT-G-LNLVLVGRNPDKLKDVSDS   96 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~-g-~~V~~~~r~~~~~~~~~~~   96 (206)
                      +-|.|+|.|+++|   .+++++++. + .+|.++..+++-.+-.++.
T Consensus        80 ~pk~VLiiGgG~G---~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~  123 (290)
T d1xj5a_          80 NPKKVLVIGGGDG---GVLREVARHASIEQIDMCEIDKMVVDVSKQF  123 (290)
T ss_dssp             CCCEEEEETCSSS---HHHHHHTTCTTCCEEEEEESCHHHHHHHHHH
T ss_pred             CCcceEEecCCch---HHHHHHHhcccceeeEEecCCHHHHHHHHHh
Confidence            3468999999877   567777776 4 4799999988665554443

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=87.25  E-value=0.8  Score=32.92  Aligned_cols=61  Identities=15%  Similarity=0.105  Sum_probs=46.5

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      ++++|+=.|++.|   ..+..+++.|. +|+.+|.+++.++.+.+..........+.+...|...
T Consensus        24 ~~~~VLDlGCG~G---~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~   85 (252)
T d1ri5a_          24 RGDSVLDLGCGKG---GDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG   85 (252)
T ss_dssp             TTCEEEEETCTTT---TTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT
T ss_pred             CcCEEEEecccCc---HHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhh
Confidence            5788999999876   23455666665 7999999999998888777665455678888888754

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.00  E-value=1.9  Score=28.15  Aligned_cols=35  Identities=11%  Similarity=0.054  Sum_probs=31.0

Q ss_pred             CCcEEEEECCC---ChHHHHHHHHHHHCCCcEEEEEcC
Q 028656           52 YGSWALVTGPT---DGIGKSFAFQLAKTGLNLVLVGRN   86 (206)
Q Consensus        52 ~~k~vlItGas---~giG~~~a~~l~~~g~~V~~~~r~   86 (206)
                      +-|.+.|.|+|   +..|..+.+.|.+.|++|+.+..+
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~   55 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPK   55 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCc
Confidence            56899999999   689999999999999998888654

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.81  E-value=0.8  Score=33.45  Aligned_cols=60  Identities=10%  Similarity=0.141  Sum_probs=45.6

Q ss_pred             CCcEEEEECCC-ChHHHHHHHHHHHCC-CcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           52 YGSWALVTGPT-DGIGKSFAFQLAKTG-LNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        52 ~~k~vlItGas-~giG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      .|++++-.||+ |+++..+|    ++| ++|+.++.|++..+.+.+.++..+-..++.++..|..+
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a----~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~  168 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIA----VYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRD  168 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHH----HHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTT
T ss_pred             CccEEEECcceEcHHHHHHH----HhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHH
Confidence            58889998888 44555444    445 58999999999988888888776656778888888765

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=86.44  E-value=1.4  Score=31.26  Aligned_cols=61  Identities=13%  Similarity=0.118  Sum_probs=44.8

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHH-CCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAK-TGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSG  115 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (206)
                      .|++|+=.|++.|   .++..+++ .|++|+.++-++..++...+.....+.+.++.+...|..+
T Consensus        33 pg~~VLDiGCG~G---~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~   94 (245)
T d1nkva_          33 PGTRILDLGSGSG---EMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG   94 (245)
T ss_dssp             TTCEEEEETCTTC---HHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred             CCCEEEEEcCCCC---HHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh
Confidence            3778888888877   34555665 4889999999998888777777666555667777777653

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=86.27  E-value=2.8  Score=29.29  Aligned_cols=86  Identities=17%  Similarity=0.213  Sum_probs=43.8

Q ss_pred             cEEEEECCCChHHHH-----HHHHHHHCCCcEEEEEcChhhHHH---HHHHHHHhcCCceEEEEEEecCCCchHHHHHH-
Q 028656           54 SWALVTGPTDGIGKS-----FAFQLAKTGLNLVLVGRNPDKLKD---VSDSIQAKYAKTQIKSVVVDFSGDLDEGVERI-  124 (206)
Q Consensus        54 k~vlItGas~giG~~-----~a~~l~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-  124 (206)
                      +++++.|- .|.|+.     +|.++.++|.+|.+++-+..+...   ++...+..  +..+  ....-.++.++..... 
T Consensus        11 ~vi~lvGp-~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l--~v~~--~~~~~~~~~~~~~~~~~   85 (207)
T d1ls1a2          11 NLWFLVGL-QGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKV--GVPV--LEVMDGESPESIRRRVE   85 (207)
T ss_dssp             EEEEEECC-TTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHH--TCCE--EECCTTCCHHHHHHHHH
T ss_pred             cEEEEECC-CCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhc--CCcc--ccccccchhhHHHHHHH
Confidence            34444554 578884     345667789999998887654332   22222221  2222  2222222322322222 


Q ss_pred             -HHHhcCCCccEEEEeccccCC
Q 028656          125 -KEAIEGLDVGVLINNVGISYP  145 (206)
Q Consensus       125 -~~~~~~~~id~lvnnAg~~~~  145 (206)
                       .....+.|+ ++|-.||....
T Consensus        86 ~~~~~~~~d~-vlIDTaGr~~~  106 (207)
T d1ls1a2          86 EKARLEARDL-ILVDTAGRLQI  106 (207)
T ss_dssp             HHHHHHTCCE-EEEECCCCSSC
T ss_pred             HHHhhccCcc-eeecccccchh
Confidence             234455565 77889997653

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=85.95  E-value=0.42  Score=34.06  Aligned_cols=32  Identities=25%  Similarity=0.346  Sum_probs=26.9

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcChh
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD   88 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~   88 (206)
                      |+|.||+ --|...|.+++++|.+|++++++..
T Consensus         5 ViIIGaG-~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGG-PSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcC-HHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            6777775 5688999999999999999998753

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=85.85  E-value=1.1  Score=29.98  Aligned_cols=44  Identities=16%  Similarity=0.154  Sum_probs=32.0

Q ss_pred             cEEEEECCCChHHHHHHHHHHHC--CCcEEEEE--cChhhHHHHHHHH
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKT--GLNLVLVG--RNPDKLKDVSDSI   97 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~--g~~V~~~~--r~~~~~~~~~~~~   97 (206)
                      |++.|.|+||.||.+...-+.+.  .++|+.++  +|.+.+.+...++
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f   49 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEF   49 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHH
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHH
Confidence            57899999999999998888775  46777654  4445555555544

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=85.62  E-value=2  Score=30.13  Aligned_cols=59  Identities=14%  Similarity=0.026  Sum_probs=43.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFS  114 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  114 (206)
                      .|.+|+=.|++.|   .++..+++++.+|+.+|.+++-++.+.+.++..+. ..+.+...|..
T Consensus        16 ~~~rILDiGcGtG---~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~   74 (234)
T d1xxla_          16 AEHRVLDIGAGAG---HTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAE   74 (234)
T ss_dssp             TTCEEEEESCTTS---HHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTT
T ss_pred             CCCEEEEeCCcCc---HHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccc-ccccccccccc
Confidence            4677888899887   44567778889999999999888877777766532 33666666654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=85.27  E-value=0.38  Score=34.66  Aligned_cols=32  Identities=25%  Similarity=0.269  Sum_probs=26.8

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .|+|.|| |--|.+.|.+|+++|++|.++.++.
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGG-GISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence            3778888 4568999999999999999998754

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.03  E-value=0.4  Score=35.04  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=28.1

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      .|+|.||+ --|..+|..|+++|.+|.++.+++
T Consensus         4 ~V~IvGaG-p~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAG-PSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCS-HHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcC-HHHHHHHHHHHHCCCCEEEEeCCC
Confidence            47888886 779999999999999999999875

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=84.93  E-value=0.48  Score=34.99  Aligned_cols=30  Identities=27%  Similarity=0.527  Sum_probs=26.0

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcC
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN   86 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~   86 (206)
                      |+|.|| |..|...|.+++++|.+|+++.+.
T Consensus        19 VlVIG~-G~aGl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          19 VVVVGS-GGAGFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEecC
Confidence            677777 477999999999999999999875

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=84.62  E-value=0.57  Score=32.83  Aligned_cols=37  Identities=24%  Similarity=0.273  Sum_probs=31.0

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN   86 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~   86 (206)
                      ..++||+|+|.|++.- |..+|.++++.+.++..+.|.
T Consensus        28 ~~~~gK~V~VvG~G~S-a~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSS-GIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCCBTCEEEEECCSHH-HHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCCEEEEECCCcc-HHHHHHHHHhhhccccccccc
Confidence            4467999999999743 789999999999988888775

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=84.59  E-value=0.53  Score=33.81  Aligned_cols=36  Identities=22%  Similarity=0.270  Sum_probs=28.6

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHH
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKD   92 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~   92 (206)
                      |+|.||+ .-|...|.+++++|.+|.++.+++....+
T Consensus         7 ViIIGaG-~aGl~aA~~la~~G~~V~vlEk~~~~G~k   42 (253)
T d2gqfa1           7 NIIIGAG-AAGLFCAAQLAKLGKSVTVFDNGKKIGRK   42 (253)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEECSSSSSCHH
T ss_pred             EEEECcC-HHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence            6677774 56788899999999999999998755433

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.57  E-value=0.59  Score=34.11  Aligned_cols=33  Identities=21%  Similarity=0.274  Sum_probs=26.8

Q ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN   86 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~   86 (206)
                      .++|+|.||+ -=|+..|.+|+++|++|.++..+
T Consensus         5 ~~kViVIGaG-~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           5 TGKVIIIGSG-VSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             CCEEEEECCB-HHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECCC-HHHHHHHHHHHhCCCCEEEEeCC
Confidence            4558888885 44789999999999999998654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=84.56  E-value=2.2  Score=26.51  Aligned_cols=34  Identities=26%  Similarity=0.165  Sum_probs=27.0

Q ss_pred             CcEEEEECCCChHHHHHHHHHHH---CCCcEEEEEcCh
Q 028656           53 GSWALVTGPTDGIGKSFAFQLAK---TGLNLVLVGRNP   87 (206)
Q Consensus        53 ~k~vlItGas~giG~~~a~~l~~---~g~~V~~~~r~~   87 (206)
                      .|.++|.|| |-+|.++|..+++   .|.+|.++.|.+
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence            467888888 5899999987654   488999998864

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.52  E-value=1.7  Score=32.55  Aligned_cols=42  Identities=12%  Similarity=0.098  Sum_probs=30.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCC--CcEEEEEcChhhHHHHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTG--LNLVLVGRNPDKLKDVSDS   96 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~   96 (206)
                      +-|.|+|.|+++|   .+++++++..  .+|.++..+++-.+-..+.
T Consensus       106 ~pk~VLIiGgG~G---~~~rellk~~~v~~v~~VEID~~Vv~~a~~~  149 (312)
T d2b2ca1         106 DPKRVLIIGGGDG---GILREVLKHESVEKVTMCEIDEMVIDVAKKF  149 (312)
T ss_dssp             SCCEEEEESCTTS---HHHHHHTTCTTCCEEEEECSCHHHHHHHHHH
T ss_pred             CCCeEEEeCCCch---HHHHHHHHcCCcceEEEEcccHHHHHHHHhh
Confidence            3578999999876   5677777753  4899999888665544443

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=84.02  E-value=1  Score=31.72  Aligned_cols=43  Identities=14%  Similarity=0.131  Sum_probs=33.9

Q ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHH
Q 028656           51 KYGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDS   96 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~   96 (206)
                      .+++.|+=.|++.|   .+++.++++|.+|+.++.+++.++.+.+.
T Consensus        19 ~~~~~VLDiGcG~G---~~~~~l~~~g~~v~giD~s~~~i~~a~~~   61 (225)
T d2p7ia1          19 FRPGNLLELGSFKG---DFTSRLQEHFNDITCVEASEEAISHAQGR   61 (225)
T ss_dssp             CCSSCEEEESCTTS---HHHHHHTTTCSCEEEEESCHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCc---HHHHHHHHcCCeEEEEeCcHHHhhhhhcc
Confidence            34777998998877   45677888999999999998877666544

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=83.82  E-value=2.1  Score=30.34  Aligned_cols=75  Identities=17%  Similarity=0.054  Sum_probs=48.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGL  131 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  131 (206)
                      .|.+|+-.|+++|.-.+   .+++.+.+|+.++++++..+...+.+..   ...+.+...|......+        .+  
T Consensus        70 ~g~~VLdIG~GsGy~ta---~La~l~~~V~aiE~~~~~~~~A~~~~~~---~~nv~~~~~d~~~g~~~--------~~--  133 (224)
T d1vbfa_          70 KGQKVLEIGTGIGYYTA---LIAEIVDKVVSVEINEKMYNYASKLLSY---YNNIKLILGDGTLGYEE--------EK--  133 (224)
T ss_dssp             TTCEEEEECCTTSHHHH---HHHHHSSEEEEEESCHHHHHHHHHHHTT---CSSEEEEESCGGGCCGG--------GC--
T ss_pred             ccceEEEecCCCCHHHH---HHHHHhcccccccccHHHHHHHHHHHhc---ccccccccCchhhcchh--------hh--
Confidence            47789999999886444   4566677999999998877766554433   34566666666542111        12  


Q ss_pred             CccEEEEeccc
Q 028656          132 DVGVLINNVGI  142 (206)
Q Consensus       132 ~id~lvnnAg~  142 (206)
                      ..|.++.+++.
T Consensus       134 pfD~Iiv~~a~  144 (224)
T d1vbfa_         134 PYDRVVVWATA  144 (224)
T ss_dssp             CEEEEEESSBB
T ss_pred             hHHHHHhhcch
Confidence            36688877654

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=83.77  E-value=1.2  Score=30.58  Aligned_cols=66  Identities=15%  Similarity=0.204  Sum_probs=43.7

Q ss_pred             HHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCccEEEEeccccCC
Q 028656           70 AFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDVGVLINNVGISYP  145 (206)
Q Consensus        70 a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~id~lvnnAg~~~~  145 (206)
                      .+++++++.+|+.+||+++.++...+.     ...++..+..+.++     +.+....++...+|.++..-|++..
T Consensus        33 s~~iL~~~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~-----~~~~l~~~~~~~vdgIl~DLGvSs~   98 (182)
T d1wg8a2          33 ARGILERGGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRH-----LKRHLAALGVERVDGILADLGVSSF   98 (182)
T ss_dssp             HHHHHHTTCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGG-----HHHHHHHTTCSCEEEEEEECSCCHH
T ss_pred             HHHHhcccCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHH-----HHHHHHHcCCCccCEEEEEccCCHH
Confidence            355566678999999999877654432     23456666655543     3445555554468899999998764

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=83.68  E-value=0.5  Score=35.80  Aligned_cols=30  Identities=20%  Similarity=0.276  Sum_probs=24.7

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcC
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN   86 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~   86 (206)
                      |+|.|++ --|..+|.+|++.|.+|+++.+-
T Consensus         5 VIVVGsG-~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           5 AVVIGTG-YGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEeCcC-HHHHHHHHHHHHCcCeEEEEecC
Confidence            5666664 45899999999999999999873

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.46  E-value=0.56  Score=32.84  Aligned_cols=31  Identities=23%  Similarity=0.293  Sum_probs=26.0

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      ++|.||+ --|.+.|.++++.|.+|+++++..
T Consensus         8 viVIG~G-pAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           8 VVIIGGG-PAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCC-HHHHHHHHHHHHCCCcEEEEEecC
Confidence            6777775 449999999999999999998753

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.40  E-value=4.5  Score=29.48  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=26.3

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEcChhhHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNPDKLKDV   93 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~~~~~~~   93 (206)
                      +.+.|+|.|+++|   .+++++++.+. +|.++..+++-.+-.
T Consensus        72 ~p~~vLiiG~G~G---~~~~~~l~~~~~~v~~VEiD~~Vi~~a  111 (276)
T d1mjfa_          72 KPKRVLVIGGGDG---GTVREVLQHDVDEVIMVEIDEDVIMVS  111 (276)
T ss_dssp             CCCEEEEEECTTS---HHHHHHTTSCCSEEEEEESCHHHHHHH
T ss_pred             CCceEEEecCCch---HHHHHHHHhCCceEEEecCCHHHHHHH
Confidence            4578999998876   34555565543 788888887554443

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=83.40  E-value=0.43  Score=32.92  Aligned_cols=36  Identities=36%  Similarity=0.457  Sum_probs=27.8

Q ss_pred             cccCCcEEEEECCCChHHHH-HHHHHHHCCCcEEEEEc
Q 028656           49 LRKYGSWALVTGPTDGIGKS-FAFQLAKTGLNLVLVGR   85 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~-~a~~l~~~g~~V~~~~r   85 (206)
                      +...|+-++++|.+ |.|++ +|.+|.++|++++.=|+
T Consensus        11 v~~~g~gvli~G~s-G~GKS~lal~l~~~G~~lvaDD~   47 (177)
T d1knxa2          11 LEVFGVGVLLTGRS-GIGKSECALDLINKNHLFVGDDA   47 (177)
T ss_dssp             EEETTEEEEEEESS-SSSHHHHHHHHHTTTCEEEEEEE
T ss_pred             EEECCEEEEEEcCC-CCCHHHHHHHHHHcCCceecCCe
Confidence            44678889999775 77886 88899999997665443

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=83.23  E-value=0.46  Score=35.83  Aligned_cols=29  Identities=17%  Similarity=0.352  Sum_probs=25.0

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEc
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGR   85 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r   85 (206)
                      ++|.|++-| |..+|++|++.|.+|+++.+
T Consensus         7 viIVGsG~a-G~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           7 VVIVGSGPI-GCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEECCSHH-HHHHHHHHHHTTCEEEEECS
T ss_pred             EEEECcCHH-HHHHHHHHhhCCCeEEEEec
Confidence            677777655 89999999999999999976

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.20  E-value=2.3  Score=30.11  Aligned_cols=82  Identities=12%  Similarity=0.118  Sum_probs=54.2

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHH-CC----CcEEEEEcChhhHHHHHHHHHHhc----CCceEEEEEEecCCCchHHHH
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAK-TG----LNLVLVGRNPDKLKDVSDSIQAKY----AKTQIKSVVVDFSGDLDEGVE  122 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~-~g----~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~  122 (206)
                      .|.+|+..|+++|--.++.-+++. .|    .+|+.++++++-.+...+.+....    .-..+.+...|..+...    
T Consensus        80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~----  155 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP----  155 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG----
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc----
Confidence            578999999999988888888764 44    479999999877666655543321    12346677777654211    


Q ss_pred             HHHHHhcCCCccEEEEecccc
Q 028656          123 RIKEAIEGLDVGVLINNVGIS  143 (206)
Q Consensus       123 ~~~~~~~~~~id~lvnnAg~~  143 (206)
                            +.-..|.++.+++..
T Consensus       156 ------~~~~fD~Iiv~~a~~  170 (223)
T d1r18a_         156 ------PNAPYNAIHVGAAAP  170 (223)
T ss_dssp             ------GGCSEEEEEECSCBS
T ss_pred             ------cccceeeEEEEeech
Confidence                  111466888777653

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=83.14  E-value=0.58  Score=33.78  Aligned_cols=31  Identities=26%  Similarity=0.377  Sum_probs=26.5

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      ++|.||+.+ |...|.++++.|.+|.++.++.
T Consensus         4 viVIG~G~a-G~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           4 LIVIGGGSG-GMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             EEEECCSHH-HHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHH-HHHHHHHHHHCCCeEEEEecCC
Confidence            577787655 9999999999999999999863

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.03  E-value=3.5  Score=29.59  Aligned_cols=85  Identities=14%  Similarity=0.054  Sum_probs=56.9

Q ss_pred             cEEEEECCC-ChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCC
Q 028656           54 SWALVTGPT-DGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLD  132 (206)
Q Consensus        54 k~vlItGas-~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  132 (206)
                      ..++=.|.+ |-|+..++++.  .+++++.++.+++.++-+.+.++..+-..++.....+..+...   ..+.+ .+...
T Consensus        63 ~~~LDiGtGsg~I~~~l~~~~--~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~---~~~~~-~~~~~  136 (250)
T d2h00a1          63 RRGIDIGTGASCIYPLLGATL--NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLM---DALKE-ESEII  136 (250)
T ss_dssp             CEEEEESCTTTTHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSST---TTSTT-CCSCC
T ss_pred             ceEEEeCCCchHHHHHHHHhC--CCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhh---hhhhh-cccCc
Confidence            345555554 66999888876  4789999999999999888888776666777777766543311   11111 12225


Q ss_pred             ccEEEEeccccC
Q 028656          133 VGVLINNVGISY  144 (206)
Q Consensus       133 id~lvnnAg~~~  144 (206)
                      .|++|.|.-...
T Consensus       137 fD~ivsNPPY~~  148 (250)
T d2h00a1         137 YDFCMCNPPFFA  148 (250)
T ss_dssp             BSEEEECCCCC-
T ss_pred             eeEEEecCcccc
Confidence            779999987654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.86  E-value=1.6  Score=28.92  Aligned_cols=40  Identities=20%  Similarity=0.167  Sum_probs=28.3

Q ss_pred             cccccCCcEEEEECCCChHHHHHHHHHHHCCCc-EEEEEcCh
Q 028656           47 KNLRKYGSWALVTGPTDGIGKSFAFQLAKTGLN-LVLVGRNP   87 (206)
Q Consensus        47 ~~~~~~~k~vlItGas~giG~~~a~~l~~~g~~-V~~~~r~~   87 (206)
                      ..+..-++.|+|.|| |-.|...|..+.+.|++ |.++.|..
T Consensus        39 ~~~p~~~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          39 SPLPSIRGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCCCCCSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CccccCCCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            344444556777766 46788999999999985 66777653

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=82.52  E-value=0.55  Score=32.67  Aligned_cols=31  Identities=16%  Similarity=0.217  Sum_probs=26.2

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      ++|.||+ -.|.+.|..+++.|.+|+++.++.
T Consensus         6 vvVIGgG-paGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGG-PGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCS-HHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCC-HHHHHHHHHHHHCCCcEEEEEecC
Confidence            6777775 569999999999999999998753

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=82.50  E-value=2.1  Score=26.01  Aligned_cols=37  Identities=16%  Similarity=0.047  Sum_probs=28.2

Q ss_pred             CCcEEEEECCCChHH-HHHHHHHHHCCCcEEEEEcChhh
Q 028656           52 YGSWALVTGPTDGIG-KSFAFQLAKTGLNLVLVGRNPDK   89 (206)
Q Consensus        52 ~~k~vlItGas~giG-~~~a~~l~~~g~~V~~~~r~~~~   89 (206)
                      +.|++.+.|-+ |+| .++|+.|.++|++|...|+....
T Consensus         7 ~~~~ihfiGig-G~GMs~LA~~L~~~G~~VsGSD~~~~~   44 (96)
T d1p3da1           7 RVQQIHFIGIG-GAGMSGIAEILLNEGYQISGSDIADGV   44 (96)
T ss_dssp             TCCEEEEETTT-STTHHHHHHHHHHHTCEEEEEESCCSH
T ss_pred             hCCEEEEEEEC-HHHHHHHHHHHHhCCCEEEEEeCCCCh
Confidence            35667777765 444 56799999999999999987644

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=82.45  E-value=3.3  Score=29.31  Aligned_cols=62  Identities=8%  Similarity=-0.087  Sum_probs=44.6

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEec
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF  113 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~  113 (206)
                      +-|+++=.|...|......-+-...+.+|+.++.+++..+...+.+.+.+...++..+..|.
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a  120 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  120 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHH
Confidence            46789999998776655544444557799999999988887777777765555666655443

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.40  E-value=0.5  Score=34.77  Aligned_cols=34  Identities=35%  Similarity=0.579  Sum_probs=27.8

Q ss_pred             cEEEEECCCChHHHHH-----HHHHHHCCCcEEEEEcChh
Q 028656           54 SWALVTGPTDGIGKSF-----AFQLAKTGLNLVLVGRNPD   88 (206)
Q Consensus        54 k~vlItGas~giG~~~-----a~~l~~~g~~V~~~~r~~~   88 (206)
                      |+++|.| =||.|+..     |..|+++|.+|.++|-+++
T Consensus         3 r~Iaisg-KGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ   41 (289)
T d2afhe1           3 RQCAIYG-KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK   41 (289)
T ss_dssp             EEEEEEE-CTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             cEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            4667787 78999874     7789999999999999863

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.30  E-value=1.2  Score=32.08  Aligned_cols=34  Identities=21%  Similarity=0.255  Sum_probs=28.4

Q ss_pred             ccCCcEEEEECCCChHHHHHHHHHHH-CCCcEEEEE
Q 028656           50 RKYGSWALVTGPTDGIGKSFAFQLAK-TGLNLVLVG   84 (206)
Q Consensus        50 ~~~~k~vlItGas~giG~~~a~~l~~-~g~~V~~~~   84 (206)
                      +++||+++|.|- |.+|..+|+.|++ .|++|+.++
T Consensus        29 ~l~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vs   63 (239)
T d1gtma1          29 TLKGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVS   63 (239)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHhcCcceeecc
Confidence            377999999998 5699999999986 588887764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=82.24  E-value=0.79  Score=26.99  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=29.3

Q ss_pred             cEEEEECCCChHHHHHHHHHHHCCCcEEEEEcChh
Q 028656           54 SWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPD   88 (206)
Q Consensus        54 k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~   88 (206)
                      |++.|.|| |-+|+-++..-.+.|.++.+.+-+.+
T Consensus         2 k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            57888888 57999999999999999999987654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=81.99  E-value=0.43  Score=32.70  Aligned_cols=34  Identities=26%  Similarity=0.211  Sum_probs=28.0

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEcC
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN   86 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~g~~V~~~~r~   86 (206)
                      +++.|+|.||+ -.|.+-|..+++.|.+|+++.+.
T Consensus         4 k~~dVvIIGGG-paGl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSG-PAGYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEEECCS-HHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCCcEEEECCC-HHHHHHHHHHHHcCCceEEEEee
Confidence            45678888886 47899999999999999999764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=81.84  E-value=0.85  Score=31.44  Aligned_cols=37  Identities=22%  Similarity=0.348  Sum_probs=29.1

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHH
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVS   94 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~   94 (206)
                      +.|.| .|-+|..+|..++ +|++|+..|.++++.+++.
T Consensus         3 I~ViG-lG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           3 IAVAG-SGYVGLSLGVLLS-LQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             EEEEC-CSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHH
T ss_pred             EEEEC-CChhHHHHHHHHH-CCCcEEEEECCHHHHHHHh
Confidence            55665 6899999997664 7999999999987765543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.82  E-value=1.9  Score=31.73  Aligned_cols=59  Identities=14%  Similarity=0.114  Sum_probs=43.7

Q ss_pred             CCcEEEEECCCChHHHHHHHHHH-HCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEec
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLA-KTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF  113 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~  113 (206)
                      .|.+||=.|++.|   .++.+++ +.|++|+.+..+++..+...+...+.+...++.+...|.
T Consensus        62 ~G~~VLDiGCG~G---~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~  121 (285)
T d1kpga_          62 PGMTLLDVGCGWG---ATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW  121 (285)
T ss_dssp             TTCEEEEETCTTS---HHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG
T ss_pred             CCCEEEEecCcch---HHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhh
Confidence            5888999999865   3444444 459999999999988887777777665556677766665

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=81.78  E-value=0.46  Score=32.52  Aligned_cols=32  Identities=50%  Similarity=0.744  Sum_probs=25.8

Q ss_pred             cccCCcEEEEECCCChHHHH-HHHHHHHCCCcEE
Q 028656           49 LRKYGSWALVTGPTDGIGKS-FAFQLAKTGLNLV   81 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~-~a~~l~~~g~~V~   81 (206)
                      +...|+-++|+|.+ |.|++ ++.+|.++|++++
T Consensus        11 v~~~g~gvli~G~s-g~GKS~la~~l~~~g~~li   43 (169)
T d1ko7a2          11 VDVYGVGVLITGDS-GIGKSETALELIKRGHRLV   43 (169)
T ss_dssp             EEETTEEEEEEEST-TSSHHHHHHHHHHTTCEEE
T ss_pred             EEECCEEEEEEeCC-CCCHHHHHHHHHHcCCeEE
Confidence            45678999999986 77886 8889999998644

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=81.76  E-value=0.7  Score=31.77  Aligned_cols=36  Identities=36%  Similarity=0.617  Sum_probs=27.1

Q ss_pred             cccCCcEEEEECCCChHHH-HHHHHHHHCCCcEEEEEc
Q 028656           49 LRKYGSWALVTGPTDGIGK-SFAFQLAKTGLNLVLVGR   85 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~-~~a~~l~~~g~~V~~~~r   85 (206)
                      +...|+-++++|.+ |.|+ .+|.+|.++|++++.=|+
T Consensus        10 v~~~g~gvl~~G~s-G~GKStlal~l~~~g~~lv~DD~   46 (176)
T d1kkma_          10 VDIYGLGVLITGDS-GVGKSETALELVQRGHRLIADDR   46 (176)
T ss_dssp             EEETTEEEEEECCT-TSCHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEECCEEEEEEeCC-CCCHHHHHHHHHHcCCeEEecCe
Confidence            44678999999875 6787 668889999997655443

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.71  E-value=1.1  Score=32.23  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=29.3

Q ss_pred             cccCCcEEEEECCCChHHHHHHHHHHH-CCCcEEEEE
Q 028656           49 LRKYGSWALVTGPTDGIGKSFAFQLAK-TGLNLVLVG   84 (206)
Q Consensus        49 ~~~~~k~vlItGas~giG~~~a~~l~~-~g~~V~~~~   84 (206)
                      .+++|++++|-| .|.+|..+|+.|.+ .|++|+.++
T Consensus        27 ~~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vs   62 (234)
T d1b26a1          27 IDPKKATVAVQG-FGNVGQFAALLISQELGSKVVAVS   62 (234)
T ss_dssp             CCTTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEE
T ss_pred             CCcCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEee
Confidence            356799999987 57999999999975 599988775

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.63  E-value=0.58  Score=33.01  Aligned_cols=30  Identities=20%  Similarity=0.245  Sum_probs=25.7

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcC
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN   86 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~   86 (206)
                      ++|.||+.+ |.+.|.++++.|.+|.++.+.
T Consensus         6 viVIG~Gpa-Gl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           6 LIIIGGGSG-GLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             EEEECCSHH-HHHHHHHHGGGCCCEEEECCC
T ss_pred             EEEECCCHH-HHHHHHHHHHCCCeEEEEecc
Confidence            677888655 999999999999999999854

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.54  E-value=0.86  Score=33.58  Aligned_cols=31  Identities=29%  Similarity=0.335  Sum_probs=25.5

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      |+|.||+ --|.+.|.+|+++|.+|+++.++.
T Consensus         2 ViVIGaG-~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGG-ISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCB-HHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCC-HHHHHHHHHHHhCCCCEEEEecCC
Confidence            5777775 558999999999999999998643

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.36  E-value=0.77  Score=31.84  Aligned_cols=31  Identities=26%  Similarity=0.328  Sum_probs=25.7

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      ++|.||+ -.|.+.|..+++.|.+|+++.+..
T Consensus         6 viVIG~G-paGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           6 TLVVGAG-PGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEECCC-HHHHHHHHHHHHCCCEEEEEecCC
Confidence            6677764 459999999999999999998763

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.26  E-value=2.4  Score=31.04  Aligned_cols=59  Identities=8%  Similarity=0.052  Sum_probs=43.9

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHC-CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEec
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKT-GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDF  113 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~  113 (206)
                      .|.+||=.|++.|   .++..++++ |++|+.++.+++..+...+.+++.+-...+.....|.
T Consensus        52 ~g~~VLDiGCG~G---~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~  111 (280)
T d2fk8a1          52 PGMTLLDIGCGWG---TTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW  111 (280)
T ss_dssp             TTCEEEEESCTTS---HHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG
T ss_pred             CCCEEEEecCCch---HHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhh
Confidence            4889999999866   345666654 8999999999998888888877765455555555443

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=81.23  E-value=0.73  Score=34.26  Aligned_cols=30  Identities=20%  Similarity=0.471  Sum_probs=25.6

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcC
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRN   86 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~   86 (206)
                      |+|.|+ |.-|...|.+++++|.+|+++.+.
T Consensus        26 VvVIG~-G~aGl~aA~~la~~G~~V~llEk~   55 (322)
T d1d4ca2          26 VVIIGS-GGAGLAAAVSARDAGAKVILLEKE   55 (322)
T ss_dssp             EEEECS-SHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCC
Confidence            677766 467999999999999999999875

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.22  E-value=1.3  Score=29.19  Aligned_cols=32  Identities=22%  Similarity=0.322  Sum_probs=25.8

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC---cEEEEEcC
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL---NLVLVGRN   86 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~---~V~~~~r~   86 (206)
                      .|.|.||||-.|+++.+.|.++++   ++..++.+
T Consensus         4 nVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~   38 (144)
T d2hjsa1           4 NVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA   38 (144)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeec
Confidence            489999999999999999987653   67666544

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.15  E-value=0.74  Score=34.11  Aligned_cols=31  Identities=16%  Similarity=0.281  Sum_probs=26.2

Q ss_pred             EEEECCCChHHHHHHHHHHHCCCcEEEEEcCh
Q 028656           56 ALVTGPTDGIGKSFAFQLAKTGLNLVLVGRNP   87 (206)
Q Consensus        56 vlItGas~giG~~~a~~l~~~g~~V~~~~r~~   87 (206)
                      ++|.||+ --|..+|++|+++|.+|.++.++.
T Consensus         4 v~IIGaG-~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           4 YIIVGSG-LFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEECCS-HHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             EEEECCc-HHHHHHHHHHHhCCCcEEEEECCC
Confidence            6788875 558999999999999999998764

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.15  E-value=5.6  Score=26.32  Aligned_cols=75  Identities=15%  Similarity=0.047  Sum_probs=40.3

Q ss_pred             EEEECCCChHHHHHHHH-HHH-C----CCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhc
Q 028656           56 ALVTGPTDGIGKSFAFQ-LAK-T----GLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIE  129 (206)
Q Consensus        56 vlItGas~giG~~~a~~-l~~-~----g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  129 (206)
                      +.|.||++ .|...+.. +++ .    +.++++.|.++++++...+......... .   ....+.+.       .+.+.
T Consensus         3 IaiIGaGs-~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~-~---~~~~t~~~-------~~~l~   70 (162)
T d1up7a1           3 IAVIGGGS-SYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDR-F---KVLISDTF-------EGAVV   70 (162)
T ss_dssp             EEEETTTC-TTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTS-S---EEEECSSH-------HHHHT
T ss_pred             EEEECCCH-HHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccC-c---eEEEecCc-------ccccC
Confidence            66777754 45444433 222 1    3589999999998775544333322111 1   12223221       12334


Q ss_pred             CCCccEEEEeccccC
Q 028656          130 GLDVGVLINNVGISY  144 (206)
Q Consensus       130 ~~~id~lvnnAg~~~  144 (206)
                      +-|  ++|..||...
T Consensus        71 ~aD--vVVita~~~~   83 (162)
T d1up7a1          71 DAK--YVIFQFRPGG   83 (162)
T ss_dssp             TCS--EEEECCCTTH
T ss_pred             CCC--EEEEecccCC
Confidence            434  9999998753

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=81.08  E-value=5.7  Score=28.88  Aligned_cols=58  Identities=19%  Similarity=0.216  Sum_probs=37.1

Q ss_pred             CCcEEEEECCCChHHHHHHHHHHHC-C-CcEEEEEcChhhHHHHHHHHHH---hcCCceEEEEEEe
Q 028656           52 YGSWALVTGPTDGIGKSFAFQLAKT-G-LNLVLVGRNPDKLKDVSDSIQA---KYAKTQIKSVVVD  112 (206)
Q Consensus        52 ~~k~vlItGas~giG~~~a~~l~~~-g-~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~d  112 (206)
                      +-+.|+|.|+++|   .++++++++ + .+|.++..+++-.+-..+.+..   ...+.++..+..|
T Consensus        75 ~p~~vLiiGgG~G---~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D  137 (274)
T d1iy9a_          75 NPEHVLVVGGGDG---GVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDD  137 (274)
T ss_dssp             SCCEEEEESCTTC---HHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESC
T ss_pred             CcceEEecCCCCc---HHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEech
Confidence            4578999999877   566777764 3 4899999998766655544322   1134555555443

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=80.61  E-value=0.9  Score=31.64  Aligned_cols=32  Identities=25%  Similarity=0.392  Sum_probs=26.0

Q ss_pred             EEEEECCCChHHHHHHHHHHHCCC-cEEEEEcCh
Q 028656           55 WALVTGPTDGIGKSFAFQLAKTGL-NLVLVGRNP   87 (206)
Q Consensus        55 ~vlItGas~giG~~~a~~l~~~g~-~V~~~~r~~   87 (206)
                      .|+|.||+ --|.+.|.+|+++|. +|+++.++.
T Consensus         2 ~V~IIGaG-~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAG-MSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCB-HHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCc-HHHHHHHHHHHhCCCCcEEEEECCC
Confidence            37788875 558899999999996 699998764

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=80.51  E-value=3.4  Score=30.18  Aligned_cols=76  Identities=20%  Similarity=0.219  Sum_probs=51.2

Q ss_pred             EEEEEC-CCChHHHHHHHHHHHCCCcEEEEEcChhhHHHHHHHHHHhcCCceEEEEEEecCCCchHHHHHHHHHhcCCCc
Q 028656           55 WALVTG-PTDGIGKSFAFQLAKTGLNLVLVGRNPDKLKDVSDSIQAKYAKTQIKSVVVDFSGDLDEGVERIKEAIEGLDV  133 (206)
Q Consensus        55 ~vlItG-as~giG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~i  133 (206)
                      .++=.| |||-||.+++++.  ...+|+.+|.++..++-+.+..+..+- ..+.++..|.-+..           .+..+
T Consensus       111 ~vlDlGtGSG~I~i~la~~~--p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~~~~-----------~~~~f  176 (274)
T d2b3ta1         111 RILDLGTGTGAIALALASER--PDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSAL-----------AGQQF  176 (274)
T ss_dssp             EEEEETCTTSHHHHHHHHHC--TTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTGGG-----------TTCCE
T ss_pred             ceeeeehhhhHHHHHHHhhC--CcceeeeccchhHHHhHHHHHHHHhCc-ccceeeeccccccc-----------CCCce
Confidence            344445 4566777766543  356999999999998888887776543 34777777765431           22357


Q ss_pred             cEEEEeccccC
Q 028656          134 GVLINNVGISY  144 (206)
Q Consensus       134 d~lvnnAg~~~  144 (206)
                      |++|.|.....
T Consensus       177 DlIvsNPPYi~  187 (274)
T d2b3ta1         177 AMIVSNPPYID  187 (274)
T ss_dssp             EEEEECCCCBC
T ss_pred             eEEEecchhhh
Confidence            89999976654

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.16  E-value=1.3  Score=27.92  Aligned_cols=33  Identities=18%  Similarity=0.263  Sum_probs=28.8

Q ss_pred             cEEEEECCC---ChHHHHHHHHHHHCCCcEEEEEcC
Q 028656           54 SWALVTGPT---DGIGKSFAFQLAKTGLNLVLVGRN   86 (206)
Q Consensus        54 k~vlItGas---~giG~~~a~~l~~~g~~V~~~~r~   86 (206)
                      |.+.|.|+|   +..|..+.+.|.+.|++|+.+..+
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~   37 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPN   37 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccc
Confidence            689999999   669999999999999998887644

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=80.07  E-value=2.2  Score=29.88  Aligned_cols=37  Identities=22%  Similarity=0.322  Sum_probs=26.1

Q ss_pred             cCCcEEEEECCCChHHHHH-----HHHHHHCCCcEEEEEcChh
Q 028656           51 KYGSWALVTGPTDGIGKSF-----AFQLAKTGLNLVLVGRNPD   88 (206)
Q Consensus        51 ~~~k~vlItGas~giG~~~-----a~~l~~~g~~V~~~~r~~~   88 (206)
                      -+++++++.|.+ |.|+..     |.++.++|.+|.++.-+..
T Consensus         4 ~~~~vi~lvGpt-GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~   45 (207)
T d1okkd2           4 PKGRVVLVVGVN-GVGKTTTIAKLGRYYQNLGKKVMFCAGDTF   45 (207)
T ss_dssp             CSSSEEEEECST-TSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred             CCCEEEEEECCC-CCCHHHHHHHHHHHHHHCCCcEEEEEeccc
Confidence            356788888765 667653     4667778999998877653