BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028657
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 7/122 (5%)
Query: 39 KFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPA 98
K P L+ +KRY+ R LGK F Y T + E FAG +S+ +
Sbjct: 13 KEIPDVLVDPRTMKRYMRGRF---LGKGGFAKCYEITDMDTKEVFAGKVVPKSML--LKP 67
Query: 99 NVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEI 158
+ KE + +H L + G FF +Y L R L H RR V
Sbjct: 68 HQKEKMSTEIAIHKSLDNPHVVGFHG--FFEDDDFVYVVLEICRRRSLLELHKRRKAVTE 125
Query: 159 PE 160
PE
Sbjct: 126 PE 127
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 7/122 (5%)
Query: 39 KFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPA 98
K P L+ +KRY+ R LGK F Y T + E FAG +S+ +
Sbjct: 29 KEIPDVLVDPRTMKRYMRGRF---LGKGGFAKCYEITDMDTKEVFAGKVVPKSML--LKP 83
Query: 99 NVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEI 158
+ KE + +H L + G FF +Y L R L H RR V
Sbjct: 84 HQKEKMSTEIAIHKSLDNPHVVGFHG--FFEDDDFVYVVLEICRRRSLLELHKRRKAVTE 141
Query: 159 PE 160
PE
Sbjct: 142 PE 143
>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1)
Catalytic Domain
Length = 317
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 7/122 (5%)
Query: 39 KFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPA 98
K P L+ +KRY+ R LGK F Y T + E FAG +S+ +
Sbjct: 29 KEIPDVLVDPRTMKRYMRGRF---LGKGGFAKCYEITDMDTKEVFAGKVVPKSML--LKP 83
Query: 99 NVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEI 158
+ KE + +H L + G FF +Y L R L H RR V
Sbjct: 84 HQKEKMSTEIAIHKSLDNPHVVGFHG--FFEDDDFVYVVLEICRRRSLLELHKRRKAVTE 141
Query: 159 PE 160
PE
Sbjct: 142 PE 143
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 7/122 (5%)
Query: 39 KFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPA 98
K P L+ +KRY+ R LGK F Y T + E FAG +S+ +
Sbjct: 29 KEIPDVLVDPRTMKRYMRGRF---LGKGGFAKCYEITDMDTKEVFAGKVVPKSML--LKP 83
Query: 99 NVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEI 158
+ KE + +H L + G FF +Y L R L H RR V
Sbjct: 84 HQKEKMSTEIAIHKSLDNPHVVGFHG--FFEDDDFVYVVLEICRRRSLLELHKRRKAVTE 141
Query: 159 PE 160
PE
Sbjct: 142 PE 143
>pdb|3PG7|A Chain A, Crystal Structure Of The H. Sapiens Nf1 Sec-Ph Domain
(Del1750 Mutant)
pdb|3PG7|B Chain B, Crystal Structure Of The H. Sapiens Nf1 Sec-Ph Domain
(Del1750 Mutant)
Length = 256
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 13/190 (6%)
Query: 15 IDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKK-AFTVLYV 73
+ L IF G K G I + + F ++ ++L ++ + P K V
Sbjct: 7 LKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLT 66
Query: 74 HTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGG 133
HTG N L + P +N+ AVY + R + RL + G
Sbjct: 67 HTG---PSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERL----LTG 119
Query: 134 LYG--KLRYVNRLDYLWEHVRRHEVEIPEFVMDHDEDLEYRPMMDYGLESDHRRVYGAPA 191
L G +L +++ L EH+ + ++P + +EDL+ + L+ H+ +
Sbjct: 120 LKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEEDLK---VFHNALKLAHKDTKVSIK 176
Query: 192 VDSPALSIYS 201
V S A+ + S
Sbjct: 177 VGSTAVQVTS 186
>pdb|2D4Q|A Chain A, Crystal Structure Of The Sec-Ph Domain Of The Human
Neurofibromatosis Type 1 Protein
pdb|2D4Q|B Chain B, Crystal Structure Of The Sec-Ph Domain Of The Human
Neurofibromatosis Type 1 Protein
Length = 257
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 13/190 (6%)
Query: 15 IDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKK-AFTVLYV 73
+ L IF G K G I + + F ++ ++L ++ + P K V
Sbjct: 7 LKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLT 66
Query: 74 HTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGG 133
HTG N L + P +N+ AVY + R + RL + G
Sbjct: 67 HTG---PSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERL----LTG 119
Query: 134 LYG--KLRYVNRLDYLWEHVRRHEVEIPEFVMDHDEDLEYRPMMDYGLESDHRRVYGAPA 191
L G +L +++ L EH+ + ++P + +EDL+ + L+ H+ +
Sbjct: 120 LKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEEDLK---VFHNALKLAHKDTKVSIK 176
Query: 192 VDSPALSIYS 201
V S A+ + S
Sbjct: 177 VGSTAVQVTS 186
>pdb|2E2X|A Chain A, Sec14 Homology Module Of Neurofibromin In Complex With
Phosphatitylethanolamine
pdb|2E2X|B Chain B, Sec14 Homology Module Of Neurofibromin In Complex With
Phosphatitylethanolamine
Length = 277
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 13/190 (6%)
Query: 15 IDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKK-AFTVLYV 73
+ L IF G K G I + + F ++ ++L ++ + P K V
Sbjct: 27 LKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLT 86
Query: 74 HTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGG 133
HTG N L + P +N+ AVY + R + RL + G
Sbjct: 87 HTG---PSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERL----LTG 139
Query: 134 LYG--KLRYVNRLDYLWEHVRRHEVEIPEFVMDHDEDLEYRPMMDYGLESDHRRVYGAPA 191
L G +L +++ L EH+ + ++P + +EDL+ + L+ H+ +
Sbjct: 140 LKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEEDLK---VFHNALKLAHKDTKVSIK 196
Query: 192 VDSPALSIYS 201
V S A+ + S
Sbjct: 197 VGSTAVQVTS 206
>pdb|3P7Z|A Chain A, Crystal Structure Of The Neurofibromin Sec14-Ph Module
Containing The Patient Derived Mutation I1584v
pdb|3P7Z|B Chain B, Crystal Structure Of The Neurofibromin Sec14-Ph Module
Containing The Patient Derived Mutation I1584v
Length = 276
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 75/190 (39%), Gaps = 13/190 (6%)
Query: 15 IDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKK-AFTVLYV 73
+ L IF G K G + + + F ++ ++L ++ + P K V
Sbjct: 26 LKTLSIFYQAGTSKAGNPVFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLT 85
Query: 74 HTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGG 133
HTG N L + P +N+ AVY + R + RL + G
Sbjct: 86 HTG---PSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERL----LTG 138
Query: 134 LYG--KLRYVNRLDYLWEHVRRHEVEIPEFVMDHDEDLEYRPMMDYGLESDHRRVYGAPA 191
L G +L +++ L EH+ + ++P + +EDL+ + L+ H+ +
Sbjct: 139 LKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEEDLK---VFHNALKLAHKDTKVSIK 195
Query: 192 VDSPALSIYS 201
V S A+ + S
Sbjct: 196 VGSTAVQVTS 205
>pdb|4GFH|F Chain F, Topoisomerase Ii-Dna-Amppnp Complex
Length = 1099
Score = 30.0 bits (66), Expect = 0.98, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 21 FKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
F HG+ K+ + I+ +F+ RL + K ++SER+ + K +F V ++ +++
Sbjct: 936 FDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEK 994
>pdb|4GFH|A Chain A, Topoisomerase Ii-Dna-Amppnp Complex
Length = 1103
Score = 30.0 bits (66), Expect = 0.98, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 21 FKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
F HG+ K+ + I+ +F+ RL + K ++SER+ + K +F V ++ +++
Sbjct: 940 FDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEK 998
>pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202
pdb|1BJT|A Chain A, Topoisomerase Ii Residues 409-1201
Length = 793
Score = 30.0 bits (66), Expect = 1.0, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 21 FKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
F HG+ K+ + I+ +F+ RL + K ++SER+ + K +F V ++ +++
Sbjct: 570 FDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEK 628
>pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-segment Dna
Length = 759
Score = 29.6 bits (65), Expect = 1.1, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 21 FKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
F HG+ K+ + I+ +F+ RL + K ++SER+ + K +F V ++ +++
Sbjct: 560 FDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEK 618
>pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo
pdb|3L4K|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Metal-Bound
Length = 722
Score = 29.6 bits (65), Expect = 1.1, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 21 FKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
F HG+ K+ + I+ +F+ RL + K ++SER+ + K +F V ++ +++
Sbjct: 559 FDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEK 617
>pdb|3QFI|A Chain A, X-Ray Crystal Structure Of Transcriptional Regulator
(Ef0465) From Enterococcus Faecalis, Northeast
Structural Genomics Consortium Target Efr190
Length = 301
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 77 VQRSENFAGISALRSIYDAIPANVKENL 104
V++ +F G+S R I DA+ ANVK +L
Sbjct: 181 VRKVMSFDGVSKYRKILDAVEANVKTDL 208
>pdb|1Z25|A Chain A, Structure Of P.Furiosus Argonaute With Bound Mn2+
pdb|1Z26|A Chain A, Structure Of Pyrococcus Furiosus Argonaute With Bound
Tungstate
Length = 771
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 141 VNRLDYLWEHVRRHEVEIPEFVMDHDEDL 169
+ + LWE V + E+ EF+M H E+L
Sbjct: 150 IQSMKTLWELVNKDPKELEEFLMTHKENL 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.145 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,796,411
Number of Sequences: 62578
Number of extensions: 235427
Number of successful extensions: 532
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 16
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)