Query 028657
Match_columns 206
No_of_seqs 121 out of 384
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 01:11:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pg7_A Neurofibromin; SEC lipi 100.0 1.9E-40 6.6E-45 283.3 13.2 158 9-170 1-158 (256)
2 3peg_A Neurofibromin; SEC14 do 100.0 3.3E-32 1.1E-36 236.0 11.8 152 8-163 19-170 (290)
3 3hx3_A Retinaldehyde-binding p 99.7 3.2E-17 1.1E-21 143.0 11.7 146 14-169 137-292 (316)
4 1r5l_A Alpha-TTP, protein (alp 99.7 3.3E-17 1.1E-21 137.9 11.3 136 17-160 81-227 (262)
5 1aua_A Phosphatidylinositol tr 99.7 2.2E-16 7.7E-21 135.7 9.2 147 14-170 99-266 (296)
6 3q8g_A CRAL-TRIO domain-contai 99.6 3.6E-16 1.2E-20 136.8 7.9 149 13-170 113-281 (320)
7 1olm_A SEC14-like protein 2; l 99.6 1.3E-15 4.3E-20 136.4 9.6 138 23-170 88-246 (403)
8 1c76_A Staphylokinase, SAK; be 64.4 28 0.00094 26.0 7.1 54 23-77 29-85 (136)
9 2sak_A Staphylokinase; plasmin 54.1 41 0.0014 24.8 6.4 55 22-77 13-70 (121)
10 2lf0_A Uncharacterized protein 32.2 15 0.0005 27.1 1.0 18 99-116 89-106 (123)
11 3sbx_A Putative uncharacterize 25.0 95 0.0032 24.3 4.7 66 86-153 119-189 (189)
12 1rcu_A Conserved hypothetical 20.0 1.6E+02 0.0056 23.0 5.2 60 86-152 129-190 (195)
No 1
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=100.00 E-value=1.9e-40 Score=283.27 Aligned_cols=158 Identities=19% Similarity=0.236 Sum_probs=151.0
Q ss_pred hhHHHHHHhcCcEEEeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhcccCCCCeEEEEEcCCcccCcCCCcHHH
Q 028657 9 SEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISA 88 (206)
Q Consensus 9 ~e~~~~i~~~~i~y~~G~D~~GrpVvvi~a~~~p~~~~d~e~ll~y~l~~ll~~~~~~~y~lVy~~tg~~~~~n~p~~~~ 88 (206)
.|++++|+++++||++|.|++||||+|+++|++|...+|+|.|++|++++ ++++++++|++||+|||++ ..|.|+++|
T Consensus 1 ~ed~~~i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~t-l~~~~~~~y~lV~d~T~~~-~~n~p~~~w 78 (256)
T 3pg7_A 1 KEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLT-LKPYYAKPYEIVVDLTHTG-PSNRFKTDF 78 (256)
T ss_dssp CTTTTTHHHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHH-HTTTTTSCEEEEEECTTCC-GGGCCCHHH
T ss_pred CcchhHHHHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHH-HHHhcCCCeEEEEECCCCC-cccCCcHHH
Confidence 47899999999999999999999999999999999889999999999985 8999999999999999995 889999999
Q ss_pred HHHHHHhcchhHHhccceEEEEcCChHHHHHHHHhccccccCcCcccCcEEEeCChhHHHhhcccccccCChhHHhhhhh
Q 028657 89 LRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHDED 168 (206)
Q Consensus 89 L~~~y~~L~~~~kknLk~lyiVHPt~~~k~~~~~~~~~fis~~~k~~~KI~yv~~l~eL~~~I~~~ql~iP~~V~~~d~~ 168 (206)
|+++|+++|++++|||+++||||||+|+|.+++.+.++|.+ .++++|++|+++++||.++|+++||.||+++.++|++
T Consensus 79 l~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~--~k~~~Ki~fv~sl~eL~~~i~~~~L~LP~~t~~~~~d 156 (256)
T 3pg7_A 79 LSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTG--LKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEED 156 (256)
T ss_dssp HHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTT--TTTCTTEEEESSTTGGGGTSCGGGCCCCHHHHHTTSS
T ss_pred HHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccc--cccCCcEEEECCHHHHHhhcCHHHcCCChHHHhhccc
Confidence 99999999999999999999999999999887777788888 9999999999999999999999999999999999998
Q ss_pred hc
Q 028657 169 LE 170 (206)
Q Consensus 169 l~ 170 (206)
++
T Consensus 157 ~r 158 (256)
T 3pg7_A 157 LK 158 (256)
T ss_dssp CE
T ss_pred ce
Confidence 76
No 2
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.97 E-value=3.3e-32 Score=236.02 Aligned_cols=152 Identities=18% Similarity=0.222 Sum_probs=123.6
Q ss_pred hhhHHHHHHhcCcEEEeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhcccCCCCeEEEEEcCCcccCcCCCcHH
Q 028657 8 ESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGIS 87 (206)
Q Consensus 8 ~~e~~~~i~~~~i~y~~G~D~~GrpVvvi~a~~~p~~~~d~e~ll~y~l~~ll~~~~~~~y~lVy~~tg~~~~~n~p~~~ 87 (206)
..|++++|++.++||++|.|++||||||+++++++...+|+|.+++|++++ ++++.+++|++||+||+++ .+|.|+.+
T Consensus 19 ~~e~~~~i~~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~t-l~~~~~~~y~lV~D~T~~~-~~n~p~~~ 96 (290)
T 3peg_A 19 EKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLT-LKPYYAKPYEIVVDLTHTG-PSNRFKTD 96 (290)
T ss_dssp -----CCGGGTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHH-HTTTTTSCEEEEEECTTCC-GGGCCCHH
T ss_pred ChhhhhhhhcCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHH-HHHhcCCCeEEEEEcCCCC-ccCCChHH
Confidence 356788899999999999999999999999999999889999999999995 8999999999999999995 88999999
Q ss_pred HHHHHHHhcchhHHhccceEEEEcCChHHHHHHHHhccccccCcCcccCcEEEeCChhHHHhhcccccccCChhHH
Q 028657 88 ALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVM 163 (206)
Q Consensus 88 ~L~~~y~~L~~~~kknLk~lyiVHPt~~~k~~~~~~~~~fis~~~k~~~KI~yv~~l~eL~~~I~~~ql~iP~~V~ 163 (206)
|++++++++|++++|||+++||||||+|+|..++.+.++|.+ .++++|++|++++.+|.++|+.+|+.+|+.++
T Consensus 97 ~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~--~k~~~k~v~~~~~~~L~~~i~~~~~~lp~~~~ 170 (290)
T 3peg_A 97 FLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTG--LKGSKRLVFIDCPGKLAEHIEHEQQKLPAATL 170 (290)
T ss_dssp HHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGG--GTTCTTEEEESSSCC-----------------
T ss_pred HHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhh--hhcCceEEEcCCHHHHHhhCCHHHhcCccccc
Confidence 999999999999999999999999999999866556678888 99999999999999999999999888876433
No 3
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=99.72 E-value=3.2e-17 Score=143.01 Aligned_cols=146 Identities=14% Similarity=0.207 Sum_probs=118.1
Q ss_pred HHHhcCc-EEEeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhcccCC------CCeEEEEEcCCcccCcCC--C
Q 028657 14 LIDRLEI-FKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK------KAFTVLYVHTGVQRSENF--A 84 (206)
Q Consensus 14 ~i~~~~i-~y~~G~D~~GrpVvvi~a~~~p~~~~d~e~ll~y~l~~ll~~~~~------~~y~lVy~~tg~~~~~n~--p 84 (206)
++-+.|+ .+..|.|++||||+++.++++..+..+.+.+++++... ++.... +.+++|++.+|++ ..+. .
T Consensus 137 ~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~-lE~~l~~~~~~v~g~v~IiD~~g~s-l~~~~~~ 214 (316)
T 3hx3_A 137 CTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFI-LEKLLENEETQINGFCIIENFKGFT-MQQAASL 214 (316)
T ss_dssp HHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHH-HHHHTTSHHHHHHCEEEEEECTTCC-HHHHHHC
T ss_pred HHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHH-HHHHHhcccCCcceEEEEEECCCCC-HHHhccC
Confidence 3335666 45569999999999999988877667888777776653 443332 4699999999995 5443 4
Q ss_pred cHHHHHHHHHhcchhHHhccceEEEEcCChHHHHHHHHhccccccCcCcccCcEEEe-CChhHHHhhcccccccCChhHH
Q 028657 85 GISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGLYGKLRYV-NRLDYLWEHVRRHEVEIPEFVM 163 (206)
Q Consensus 85 ~~~~L~~~y~~L~~~~kknLk~lyiVHPt~~~k~~~~~~~~~fis~~~k~~~KI~yv-~~l~eL~~~I~~~ql~iP~~V~ 163 (206)
+.++++++...++..|+.+|+++||||+++++.++|+++ ++|++ +++++||++. +++++|.++|+.++ ||.
T Consensus 215 ~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~iv-kpfl~--~kt~~KI~~~~~~~~~L~~~I~~~~--LP~--- 286 (316)
T 3hx3_A 215 RTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVV-KPFLK--SKLLERVFVHGDDLSGFYQEIDENI--LPS--- 286 (316)
T ss_dssp CHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHH-GGGCC--HHHHTTEEEEETCCHHHHHHSCGGG--SBG---
T ss_pred ChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHH-HHhCC--HHhhhheEEeCCCHHHHHhhCCHhh--CcH---
Confidence 567899999999999999999999999999999999888 58999 9999999998 46899999999986 776
Q ss_pred hhhhhh
Q 028657 164 DHDEDL 169 (206)
Q Consensus 164 ~~d~~l 169 (206)
+|+.+.
T Consensus 287 eyGG~~ 292 (316)
T 3hx3_A 287 DFGGTL 292 (316)
T ss_dssp GGTSSB
T ss_pred hhCCCC
Confidence 555443
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=99.72 E-value=3.3e-17 Score=137.89 Aligned_cols=136 Identities=10% Similarity=0.147 Sum_probs=111.0
Q ss_pred hcCcE-EEeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhcccCC------CCeEEEEEcCCcccCcCC--CcHH
Q 028657 17 RLEIF-KIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK------KAFTVLYVHTGVQRSENF--AGIS 87 (206)
Q Consensus 17 ~~~i~-y~~G~D~~GrpVvvi~a~~~p~~~~d~e~ll~y~l~~ll~~~~~------~~y~lVy~~tg~~~~~n~--p~~~ 87 (206)
+.|.. +..|.|++||||+++.++++..+..+.+.++++.... ++.... +.+++|++.+|.+ ..+. +..+
T Consensus 81 ~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~-~E~~~~~~~~~~~g~~~I~D~~g~s-~~~~~~~~~~ 158 (262)
T 1r5l_A 81 KAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLIT-SELIVQEVETQRNGIKAIFDLEGWQ-FSHAFQITPS 158 (262)
T ss_dssp HTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHH-HHHHTTSHHHHHHCEEEEEECTTCC-HHHHHHCCHH
T ss_pred HcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHH-HHHHHhChhhcccceEEEEECCCCC-HHHHhccCHH
Confidence 55654 4569999999999999988877667777666665542 332222 4589999999995 5553 4678
Q ss_pred HHHHHHHhcchhHHhccceEEEEcCChHHHHHHHHhccccccCcCcccCcEEEeCC--hhHHHhhcccccccCCh
Q 028657 88 ALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGLYGKLRYVNR--LDYLWEHVRRHEVEIPE 160 (206)
Q Consensus 88 ~L~~~y~~L~~~~kknLk~lyiVHPt~~~k~~~~~~~~~fis~~~k~~~KI~yv~~--l~eL~~~I~~~ql~iP~ 160 (206)
+++++...++..|+++|+++||||++++++++|+++ +||++ +++++||+++.+ .++|.++|+ ++ ||.
T Consensus 159 ~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~v-kpfl~--~~t~~Ki~~~~~~~~~~L~~~i~-~~--LP~ 227 (262)
T 1r5l_A 159 VAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMI-KPFLT--EKIKERIHMHGNNYKQSLLQHFP-DI--LPL 227 (262)
T ss_dssp HHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHH-GGGSC--HHHHTTEEECCSSCHHHHHHHST-TT--SCG
T ss_pred HHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHH-HHhcC--HHHHhheEEeCCCcHHHHHHHhh-hh--CcH
Confidence 999999999999999999999999999999999888 58999 999999999965 689999998 85 676
No 5
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=99.65 E-value=2.2e-16 Score=135.67 Aligned_cols=147 Identities=15% Similarity=0.129 Sum_probs=115.1
Q ss_pred HHHhcCcEEEeccCCCCCeEEEEEeecCCCC----CCCHHHHHHHHHHHhhcc--------------cCCCCeEEEEEcC
Q 028657 14 LIDRLEIFKIHGRDKQGRKILRIIGKFFPAR----LLSVEVLKRYLSERVYPR--------------LGKKAFTVLYVHT 75 (206)
Q Consensus 14 ~i~~~~i~y~~G~D~~GrpVvvi~a~~~p~~----~~d~e~ll~y~l~~ll~~--------------~~~~~y~lVy~~t 75 (206)
.+.+....+..|.|++||||+++...++..+ ..+.++++++++.. ++. ...+.+++|++.+
T Consensus 99 ~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~-~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~ 177 (296)
T 1aua_A 99 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWE-YESVVQYRLPACSRAAGHLVETSCTIMDLK 177 (296)
T ss_dssp HHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHH-HHHHHHTHHHHHHHHHTSCCCCEEEEEECT
T ss_pred HHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCceeEEEEEECC
Confidence 4444444456799999999999988776542 24667666655442 221 1245699999999
Q ss_pred CcccCcCCCc-HHHHHHHHHhcchhHHhccceEEEEcCChHHHHHHHHhccccccCcCcccCcEEEeCC--hhHHHhhcc
Q 028657 76 GVQRSENFAG-ISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGLYGKLRYVNR--LDYLWEHVR 152 (206)
Q Consensus 76 g~~~~~n~p~-~~~L~~~y~~L~~~~kknLk~lyiVHPt~~~k~~~~~~~~~fis~~~k~~~KI~yv~~--l~eL~~~I~ 152 (206)
|++ ..+.+. .++++++...++..|+++|+++||||++++++++|+++ ++|++ +++.+||+++.+ .++|.++|+
T Consensus 178 g~s-~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~ii-kpfl~--~~t~~KI~~~~~~~~~~L~~~i~ 253 (296)
T 1aua_A 178 GIS-ISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLF-KPFLD--PVTVSKIFILGSSYQKELLKQIP 253 (296)
T ss_dssp TCC-HHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHH-GGGSC--HHHHTTEEECCSCCHHHHTTTSC
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHH-HhhcC--HhhcceEEEeCcccHHHHHhhCC
Confidence 995 555544 67889999999999999999999999999999999888 58999 999999999976 688999999
Q ss_pred cccccCChhHHhhhhhhc
Q 028657 153 RHEVEIPEFVMDHDEDLE 170 (206)
Q Consensus 153 ~~ql~iP~~V~~~d~~l~ 170 (206)
.++ ||. +|+.+..
T Consensus 254 ~~~--LP~---~yGG~~~ 266 (296)
T 1aua_A 254 AEN--LPV---KFGGKSE 266 (296)
T ss_dssp SSS--SBG---GGTSCBC
T ss_pred Hhh--CcH---HhCCCCC
Confidence 985 887 6776553
No 6
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.63 E-value=3.6e-16 Score=136.77 Aligned_cols=149 Identities=12% Similarity=0.095 Sum_probs=116.1
Q ss_pred HHHHhcCcEEEeccCCCCCeEEEEEeecCCCCC----CCHHHHHHHHHHH---hhc----------ccCCCCeEEEEEcC
Q 028657 13 ELIDRLEIFKIHGRDKQGRKILRIIGKFFPARL----LSVEVLKRYLSER---VYP----------RLGKKAFTVLYVHT 75 (206)
Q Consensus 13 ~~i~~~~i~y~~G~D~~GrpVvvi~a~~~p~~~----~d~e~ll~y~l~~---ll~----------~~~~~~y~lVy~~t 75 (206)
..+.+....+..|.|++||||+++...++..+. .+.++++.+++.. +++ ....+..++|++.+
T Consensus 113 ~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~ 192 (320)
T 3q8g_A 113 IKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLK 192 (320)
T ss_dssp HHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECT
T ss_pred HHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECC
Confidence 356666677888999999999999988776532 2555555554331 111 11235678999999
Q ss_pred CcccCcCCCc-HHHHHHHHHhcchhHHhccceEEEEcCChHHHHHHHHhccccccCcCcccCcEEEeCC--hhHHHhhcc
Q 028657 76 GVQRSENFAG-ISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGLYGKLRYVNR--LDYLWEHVR 152 (206)
Q Consensus 76 g~~~~~n~p~-~~~L~~~y~~L~~~~kknLk~lyiVHPt~~~k~~~~~~~~~fis~~~k~~~KI~yv~~--l~eL~~~I~ 152 (206)
|++ ..+.+. .++++++...++..|+++|+++||||++++++++|+++ ++|++ +++++||+++.+ .++|.++|+
T Consensus 193 g~s-l~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~i-kpfl~--~~t~~KI~~~~~~~~~~L~~~i~ 268 (320)
T 3q8g_A 193 GIS-LSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMV-KPFLD--PVTVSKIFILGSSYKKELLKQIP 268 (320)
T ss_dssp TCC-HHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTT-GGGSC--HHHHHTEEECCTTHHHHHHHHSC
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHH-HHhCC--HHHhhhEEEeCCCcHHHHHhhCC
Confidence 985 555543 68899999999999999999999999999999999877 58999 999999999976 689999999
Q ss_pred cccccCChhHHhhhhhhc
Q 028657 153 RHEVEIPEFVMDHDEDLE 170 (206)
Q Consensus 153 ~~ql~iP~~V~~~d~~l~ 170 (206)
.++ ||. +|+.+..
T Consensus 269 ~~~--LP~---~yGG~~~ 281 (320)
T 3q8g_A 269 IEN--LPV---KYGGTSV 281 (320)
T ss_dssp GGG--SBG---GGTSCBC
T ss_pred hhh--CCh---hhCCCCC
Confidence 985 787 6765543
No 7
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=99.61 E-value=1.3e-15 Score=136.41 Aligned_cols=138 Identities=16% Similarity=0.203 Sum_probs=112.8
Q ss_pred EeccCCCCCeEEEEEeecCCCC----CCCHHHHHHHHHHHhhccc-------------CCCCeEEEEEcCCcccCcCC--
Q 028657 23 IHGRDKQGRKILRIIGKFFPAR----LLSVEVLKRYLSERVYPRL-------------GKKAFTVLYVHTGVQRSENF-- 83 (206)
Q Consensus 23 ~~G~D~~GrpVvvi~a~~~p~~----~~d~e~ll~y~l~~ll~~~-------------~~~~y~lVy~~tg~~~~~n~-- 83 (206)
..|.|++||||+++..+++..+ ..+.+.++++++.. ++.. ..+.+++|++.+|++ ..+.
T Consensus 88 ~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~-~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s-l~~~~~ 165 (403)
T 1olm_A 88 MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRE-CELLLQECAHQTTKLGRKVETITIIYDCEGLG-LKHLWK 165 (403)
T ss_dssp EEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHH-HHHHHHHHHHHHHHHTSCCCCEEEEEECTTCC-GGGGCH
T ss_pred eeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHH-HHHHHHHHHhhHHhhCCcccceEEEEECCCCC-HHHHhh
Confidence 4699999999999998877653 35777777766552 3211 236799999999985 5554
Q ss_pred CcHHHHHHHHHhcchhHHhccceEEEEcCChHHHHHHHHhccccccCcCcccCcEEEeCC--hhHHHhhcccccccCChh
Q 028657 84 AGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGLYGKLRYVNR--LDYLWEHVRRHEVEIPEF 161 (206)
Q Consensus 84 p~~~~L~~~y~~L~~~~kknLk~lyiVHPt~~~k~~~~~~~~~fis~~~k~~~KI~yv~~--l~eL~~~I~~~ql~iP~~ 161 (206)
|..++++++...++..|+++|+++||+|++++++++|+++ +||++ +++++||+++.+ .++|.++|+.++ ||.
T Consensus 166 ~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~i-kpfl~--~~t~~KI~~~~~~~~~~L~~~I~~~~--LP~- 239 (403)
T 1olm_A 166 PAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLI-KPFLS--EDTRKKIMVLGANWKEVLLKHISPDQ--VPV- 239 (403)
T ss_dssp HHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHH-GGGSC--HHHHHTEEECCTTHHHHHTTTSCGGG--SBG-
T ss_pred HHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHH-HhhcC--HhhhceEEEEChhHHHHHHhhcChhh--Cch-
Confidence 4688999999999999999999999999999999999888 58999 999999999975 578999999985 787
Q ss_pred HHhhhhhhc
Q 028657 162 VMDHDEDLE 170 (206)
Q Consensus 162 V~~~d~~l~ 170 (206)
+|+.+..
T Consensus 240 --~yGG~~~ 246 (403)
T 1olm_A 240 --EYGGTMT 246 (403)
T ss_dssp --GGTSSBC
T ss_pred --hhCCCcC
Confidence 6776554
No 8
>1c76_A Staphylokinase, SAK; beta-grAsp family, hydrolase; 2.25A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1c77_A 1c78_A 1c79_A 1ssn_A
Probab=64.41 E-value=28 Score=26.03 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=41.5
Q ss_pred EeccCCCCCeEE---EEEeecCCCCCCCHHHHHHHHHHHhhcccCCCCeEEEEEcCCc
Q 028657 23 IHGRDKQGRKIL---RIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGV 77 (206)
Q Consensus 23 ~~G~D~~GrpVv---vi~a~~~p~~~~d~e~ll~y~l~~ll~~~~~~~y~lVy~~tg~ 77 (206)
..|+|..|.-++ ++--+--+...++-|.++.|+... +|....++|.+|=++-++
T Consensus 29 VTGvD~~G~~ilsP~Y~e~~Lk~G~tltKeeil~~VQ~~-idas~~~~f~vV~~~e~a 85 (136)
T 1c76_A 29 VTGVDGKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEWA-LDATAYKEFRVVELDPSA 85 (136)
T ss_dssp EEEECTTCCEEECCCCEEEECCTTCEECHHHHHHHHHHH-HTTSTTTTEEEEEECTTC
T ss_pred EeeecCCCCEEeccccEEEecCcCceecHHHHHHHHHHH-hhhhhcCceEEEecCCCc
Confidence 459999999876 222233333568899999999985 888888999999888776
No 9
>2sak_A Staphylokinase; plasminogen activation, fibrinolysis, hydrolase, plasminogen activator; 1.80A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1bui_C*
Probab=54.06 E-value=41 Score=24.76 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=43.6
Q ss_pred EEeccCCCCCeEEEEEee--cCCC-CCCCHHHHHHHHHHHhhcccCCCCeEEEEEcCCc
Q 028657 22 KIHGRDKQGRKILRIIGK--FFPA-RLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGV 77 (206)
Q Consensus 22 y~~G~D~~GrpVvvi~a~--~~p~-~~~d~e~ll~y~l~~ll~~~~~~~y~lVy~~tg~ 77 (206)
-..|+|+.|.-++..=.- ++.. ..++-+.++.++-.. ++....++|-+|-|+.++
T Consensus 13 NvtGvd~~g~~~~~p~y~d~~l~~g~~~tK~elL~~Vq~~-idas~~~qf~vVdf~e~A 70 (121)
T 2sak_A 13 NVTGVDSKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEWA-LDATAYKEFRVVELDPSA 70 (121)
T ss_dssp EEEEECTTCCEEEEEEEEEEECCTTCEECHHHHHHHHHHH-HTTSTTTTCEEEEECTTC
T ss_pred EEEeEeCCCCEEEeeeeEEEEcccCcEecHHHHHHHHHHH-hhhhhccceEEEecCccc
Confidence 356999999999877553 4444 457889999999986 777777799999998876
No 10
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=32.24 E-value=15 Score=27.14 Aligned_cols=18 Identities=22% Similarity=0.432 Sum_probs=15.1
Q ss_pred hHHhccceEEEEcCChHH
Q 028657 99 NVKENLQAVYFVHPGLQA 116 (206)
Q Consensus 99 ~~kknLk~lyiVHPt~~~ 116 (206)
+.+|..+.+.||||-..+
T Consensus 89 kLKKSVrGLVVVHPMTaL 106 (123)
T 2lf0_A 89 KLKKSVRGLVVVHPMTAL 106 (123)
T ss_dssp HHHHHTTSCEEECSSSHH
T ss_pred HHhhcccceeEecCchHH
Confidence 669999999999996543
No 11
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=25.00 E-value=95 Score=24.30 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcch-hHHhccceEEEEcC-ChHHHHH--HH-HhccccccCcCcccCcEEEeCChhHHHhhccc
Q 028657 86 ISALRSIYDAIPA-NVKENLQAVYFVHP-GLQARLF--LA-TFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRR 153 (206)
Q Consensus 86 ~~~L~~~y~~L~~-~~kknLk~lyiVHP-t~~~k~~--~~-~~~~~fis~~~k~~~KI~yv~~l~eL~~~I~~ 153 (206)
++.|-.+++.+-- +..++=|-+++++. .+|-..+ +. ....-|++ +.-.+.+.++++.+|+.+.|.+
T Consensus 119 ~GTLdElfe~lt~~qlg~~~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~--~~~~~~i~~~d~~ee~~~~l~~ 189 (189)
T 3sbx_A 119 VGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSELADTGYVS--RTAMERLIVVDNLDDALQACAP 189 (189)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCEEEECTTCTTHHHHHHHHHHHHTTSSC--HHHHHHEEEESSHHHHHHHHCC
T ss_pred cchHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCC--HHHcCeEEEeCCHHHHHHHhcC
Confidence 3446666666532 22234478999997 5665542 22 22345777 7788999999999999888753
No 12
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=20.03 E-value=1.6e+02 Score=22.98 Aligned_cols=60 Identities=8% Similarity=0.009 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcchhHHhccceEEEEc-CChHHHHHHHHhccc-cccCcCcccCcEEEeCChhHHHhhcc
Q 028657 86 ISALRSIYDAIPANVKENLQAVYFVH-PGLQARLFLATFGRL-FFNGVGGLYGKLRYVNRLDYLWEHVR 152 (206)
Q Consensus 86 ~~~L~~~y~~L~~~~kknLk~lyiVH-Pt~~~k~~~~~~~~~-fis~~~k~~~KI~yv~~l~eL~~~I~ 152 (206)
.+.|..++..+. .=|-+++++ .++|-..+-..+..- |++ +...+.+.++++.+|+.+.|.
T Consensus 129 ~GTL~E~~eal~-----~~kPV~lln~~g~w~~~l~~~~~~G~fi~--~~~~~~i~~~~~~ee~~~~l~ 190 (195)
T 1rcu_A 129 IGTAIEILGAYA-----LGKPVILLRGTGGWTDRISQVLIDGKYLD--NRRIVEIHQAWTVEEAVQIIE 190 (195)
T ss_dssp HHHHHHHHHHHH-----TTCCEEEETTSCHHHHHGGGGCBTTTBSS--TTCCSCEEEESSHHHHHHHHH
T ss_pred CcHHHHHHHHHh-----cCCCEEEECCCCccHHHHHHHHHcCCcCC--HHHcCeEEEeCCHHHHHHHHH
Confidence 445777777664 227889997 456654432222222 788 888999999999999987764
Done!