Query 028660
Match_columns 206
No_of_seqs 140 out of 1165
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 14:59:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03003 Probable polygalactur 100.0 8.1E-47 1.7E-51 332.9 26.9 205 1-206 178-389 (456)
2 PLN02218 polygalacturonase ADP 100.0 7.6E-47 1.6E-51 333.2 26.1 200 1-206 232-431 (431)
3 PLN02793 Probable polygalactur 100.0 2.8E-46 6E-51 330.8 27.2 205 1-206 217-423 (443)
4 PLN03010 polygalacturonase 100.0 8.7E-46 1.9E-50 324.0 26.7 205 1-206 197-403 (409)
5 PLN02155 polygalacturonase 100.0 9.5E-46 2.1E-50 323.0 26.3 205 1-206 185-392 (394)
6 PLN02188 polygalacturonase/gly 100.0 2.5E-45 5.4E-50 321.5 26.5 205 1-206 195-404 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 7.3E-43 1.6E-47 300.1 22.0 192 1-195 132-323 (326)
8 COG5434 PGU1 Endopygalactoruna 99.9 1.6E-22 3.6E-27 181.4 12.5 114 2-120 279-404 (542)
9 PLN02218 polygalacturonase ADP 99.8 1.4E-18 3.1E-23 153.8 19.8 169 13-202 217-408 (431)
10 PLN03003 Probable polygalactur 99.8 5.5E-18 1.2E-22 150.2 20.6 168 14-202 164-357 (456)
11 PLN02793 Probable polygalactur 99.8 1.2E-17 2.5E-22 148.6 21.1 168 14-202 203-394 (443)
12 PLN02155 polygalacturonase 99.8 8.3E-18 1.8E-22 147.5 19.8 169 14-202 171-363 (394)
13 PLN02188 polygalacturonase/gly 99.8 2.2E-17 4.8E-22 145.3 20.8 171 13-202 180-374 (404)
14 PLN03010 polygalacturonase 99.8 5.7E-17 1.2E-21 142.6 20.9 157 14-191 183-360 (409)
15 PF00295 Glyco_hydro_28: Glyco 99.8 4.6E-17 1E-21 140.2 19.2 156 14-190 118-293 (326)
16 COG5434 PGU1 Endopygalactoruna 99.3 1E-10 2.2E-15 105.7 13.6 129 12-153 262-398 (542)
17 PF03718 Glyco_hydro_49: Glyco 99.2 7E-10 1.5E-14 98.9 15.4 156 9-182 371-555 (582)
18 PF13229 Beta_helix: Right han 98.3 1E-05 2.2E-10 61.1 10.3 134 12-181 1-137 (158)
19 PF12541 DUF3737: Protein of u 98.2 3.1E-05 6.6E-10 64.1 11.7 35 17-54 16-50 (277)
20 PF03718 Glyco_hydro_49: Glyco 98.1 0.0001 2.2E-09 66.5 13.1 129 34-179 374-513 (582)
21 smart00656 Amb_all Amb_all dom 98.0 0.00035 7.6E-09 55.8 13.6 92 13-113 33-143 (190)
22 TIGR03805 beta_helix_1 paralle 97.8 0.00024 5.1E-09 61.1 10.1 17 13-29 79-95 (314)
23 TIGR03805 beta_helix_1 paralle 97.7 0.00049 1.1E-08 59.2 10.8 95 9-113 105-202 (314)
24 PF13229 Beta_helix: Right han 97.6 0.00089 1.9E-08 50.3 10.0 97 10-122 22-121 (158)
25 PF12541 DUF3737: Protein of u 97.5 0.00031 6.8E-09 58.2 6.6 36 72-117 193-228 (277)
26 smart00656 Amb_all Amb_all dom 97.5 0.0048 1E-07 49.3 13.1 76 9-85 58-144 (190)
27 PF05048 NosD: Periplasmic cop 97.4 0.0058 1.2E-07 50.0 13.5 93 12-121 14-107 (236)
28 PF12708 Pectate_lyase_3: Pect 97.3 0.008 1.7E-07 48.1 12.3 107 22-149 94-221 (225)
29 PF00544 Pec_lyase_C: Pectate 97.2 0.00058 1.3E-08 55.0 5.4 92 12-114 37-158 (200)
30 COG3866 PelB Pectate lyase [Ca 97.1 0.0052 1.1E-07 52.1 9.8 96 11-114 116-229 (345)
31 PF05048 NosD: Periplasmic cop 97.0 0.008 1.7E-07 49.1 10.2 96 9-121 33-129 (236)
32 COG3866 PelB Pectate lyase [Ca 96.8 0.017 3.6E-07 49.1 10.4 76 10-85 143-229 (345)
33 PF00544 Pec_lyase_C: Pectate 96.8 0.0059 1.3E-07 49.1 7.2 78 7-85 71-158 (200)
34 PF12708 Pectate_lyase_3: Pect 95.8 0.48 1E-05 37.7 13.6 113 45-175 94-219 (225)
35 TIGR03808 RR_plus_rpt_1 twin-a 94.1 0.37 8.1E-06 43.3 8.9 98 7-113 235-337 (455)
36 TIGR03808 RR_plus_rpt_1 twin-a 93.6 0.68 1.5E-05 41.7 9.6 41 19-60 114-163 (455)
37 PF03211 Pectate_lyase: Pectat 93.0 4.3 9.3E-05 33.1 13.3 114 11-147 75-194 (215)
38 TIGR03804 para_beta_helix para 92.2 0.25 5.3E-06 29.4 3.5 41 13-54 1-41 (44)
39 PF09251 PhageP22-tail: Salmon 91.3 6.1 0.00013 35.4 12.3 81 19-114 263-367 (549)
40 PRK10123 wcaM putative colanic 88.1 1.9 4.2E-05 36.7 6.6 22 99-120 243-264 (464)
41 PF01696 Adeno_E1B_55K: Adenov 80.6 9.6 0.00021 33.8 7.8 44 18-62 119-164 (386)
42 PLN02773 pectinesterase 77.8 46 0.00099 28.8 13.1 41 20-60 102-148 (317)
43 PLN02480 Probable pectinestera 76.4 11 0.00024 33.0 6.9 40 20-59 132-182 (343)
44 PF09251 PhageP22-tail: Salmon 76.4 11 0.00023 34.0 6.8 70 42-113 263-349 (549)
45 PF14592 Chondroitinas_B: Chon 74.5 30 0.00065 31.2 9.3 87 20-120 199-294 (425)
46 PLN02773 pectinesterase 74.4 57 0.0012 28.2 10.8 82 19-114 129-212 (317)
47 PF01696 Adeno_E1B_55K: Adenov 69.9 23 0.00049 31.5 7.3 62 13-85 138-200 (386)
48 PRK10531 acyl-CoA thioesterase 67.1 98 0.0021 27.9 12.3 122 20-160 206-343 (422)
49 smart00710 PbH1 Parallel beta- 67.0 8.8 0.00019 18.8 2.7 10 44-53 3-12 (26)
50 PRK10123 wcaM putative colanic 67.0 30 0.00066 29.7 7.2 63 21-85 178-258 (464)
51 PF14592 Chondroitinas_B: Chon 65.7 33 0.00072 30.9 7.6 102 14-121 218-329 (425)
52 PLN02698 Probable pectinestera 64.2 38 0.00083 31.2 7.9 41 20-60 270-316 (497)
53 COG3420 NosD Nitrous oxidase a 63.6 1.1E+02 0.0023 27.1 10.2 21 10-30 119-139 (408)
54 PF07602 DUF1565: Protein of u 58.7 1.1E+02 0.0023 25.6 14.1 98 15-122 92-196 (246)
55 PF07602 DUF1565: Protein of u 54.9 67 0.0015 26.8 7.2 84 1-92 105-195 (246)
56 PLN02301 pectinesterase/pectin 51.5 28 0.0006 32.5 4.8 41 20-60 323-369 (548)
57 PLN02197 pectinesterase 51.2 32 0.0007 32.4 5.2 41 20-60 364-410 (588)
58 PLN02488 probable pectinestera 51.1 1.4E+02 0.0029 27.8 9.1 34 21-54 285-323 (509)
59 PLN02480 Probable pectinestera 49.8 1.8E+02 0.0039 25.5 9.4 55 18-84 163-217 (343)
60 PLN02713 Probable pectinestera 48.7 60 0.0013 30.4 6.6 41 20-60 340-386 (566)
61 PLN02708 Probable pectinestera 48.1 2.4E+02 0.0052 26.5 10.8 41 20-60 330-376 (553)
62 PLN02933 Probable pectinestera 46.3 34 0.00074 31.8 4.6 41 20-60 305-351 (530)
63 PLN02682 pectinesterase family 46.1 75 0.0016 28.1 6.5 40 20-59 163-213 (369)
64 PLN02313 Pectinesterase/pectin 45.7 31 0.00067 32.5 4.3 35 20-54 362-401 (587)
65 PLN02416 probable pectinestera 45.2 29 0.00062 32.3 3.9 41 20-60 317-363 (541)
66 KOG0641 WD40 repeat protein [G 45.1 55 0.0012 27.2 5.1 49 50-106 94-144 (350)
67 PLN02432 putative pectinestera 44.8 80 0.0017 27.0 6.3 34 21-54 95-132 (293)
68 PLN02497 probable pectinestera 43.4 88 0.0019 27.3 6.4 35 20-54 115-161 (331)
69 PLN02506 putative pectinestera 42.6 41 0.0009 31.3 4.5 41 20-60 319-365 (537)
70 PF01095 Pectinesterase: Pecti 41.9 24 0.00052 30.2 2.7 56 20-85 87-148 (298)
71 PLN02995 Probable pectinestera 40.9 38 0.00083 31.5 4.0 35 20-54 312-351 (539)
72 PLN02314 pectinesterase 40.6 48 0.0011 31.2 4.7 41 20-60 365-411 (586)
73 PLN02217 probable pectinestera 40.5 2.6E+02 0.0056 26.9 9.5 35 20-54 337-376 (670)
74 PLN02708 Probable pectinestera 40.3 51 0.0011 30.8 4.8 18 73-90 358-375 (553)
75 PLN02995 Probable pectinestera 39.0 3.3E+02 0.0071 25.5 9.9 83 19-114 339-427 (539)
76 PLN02176 putative pectinestera 38.6 1.3E+02 0.0028 26.4 6.7 20 35-54 148-167 (340)
77 PLN02634 probable pectinestera 38.2 2.8E+02 0.0061 24.5 9.4 40 20-59 149-199 (359)
78 PF05342 Peptidase_M26_N: M26 38.2 22 0.00048 29.7 1.9 18 136-153 210-227 (250)
79 PLN02916 pectinesterase family 37.7 70 0.0015 29.5 5.2 40 21-60 278-323 (502)
80 PLN02916 pectinesterase family 36.4 3.5E+02 0.0077 25.1 11.3 83 19-114 304-392 (502)
81 PLN02506 putative pectinestera 35.8 1.7E+02 0.0037 27.3 7.4 87 13-113 341-433 (537)
82 PLN02170 probable pectinestera 35.4 76 0.0016 29.5 5.0 41 20-60 313-359 (529)
83 PLN02201 probable pectinestera 35.0 84 0.0018 29.2 5.3 41 20-60 293-339 (520)
84 PLN02304 probable pectinestera 35.0 1.4E+02 0.0029 26.6 6.4 21 34-54 186-206 (379)
85 PLN02217 probable pectinestera 34.8 51 0.0011 31.6 3.9 14 73-86 365-378 (670)
86 PLN03043 Probable pectinestera 34.3 66 0.0014 30.0 4.5 41 20-60 313-359 (538)
87 PLN02301 pectinesterase/pectin 34.1 2.1E+02 0.0046 26.8 7.7 83 19-114 350-438 (548)
88 PLN02682 pectinesterase family 33.6 3.4E+02 0.0074 24.1 9.7 82 19-113 195-279 (369)
89 PLN02197 pectinesterase 33.5 2.3E+02 0.0049 26.9 7.9 83 19-114 391-480 (588)
90 PLN02634 probable pectinestera 33.4 1.7E+02 0.0037 25.9 6.7 41 42-90 153-199 (359)
91 PLN02484 probable pectinestera 32.7 76 0.0017 29.9 4.7 35 20-54 360-399 (587)
92 PLN02313 Pectinesterase/pectin 32.6 2.1E+02 0.0045 27.1 7.5 83 19-114 389-477 (587)
93 PLN02713 Probable pectinestera 31.8 2.7E+02 0.0059 26.2 8.1 54 19-84 367-420 (566)
94 PLN03043 Probable pectinestera 31.3 4.4E+02 0.0096 24.6 10.9 83 19-114 340-428 (538)
95 PLN02745 Putative pectinestera 31.2 1.4E+02 0.003 28.3 6.1 35 20-54 372-411 (596)
96 PLN02468 putative pectinestera 30.7 81 0.0017 29.6 4.5 35 20-54 345-384 (565)
97 COG3420 NosD Nitrous oxidase a 29.7 2.4E+02 0.0052 24.9 6.8 21 10-30 171-191 (408)
98 PLN02665 pectinesterase family 29.5 4E+02 0.0087 23.6 10.3 41 19-59 153-204 (366)
99 PLN02671 pectinesterase 29.4 4E+02 0.0087 23.5 9.2 40 20-59 154-203 (359)
100 PLN02933 Probable pectinestera 29.1 4.8E+02 0.01 24.4 10.6 83 19-114 332-420 (530)
101 PF01095 Pectinesterase: Pecti 28.6 3.7E+02 0.008 22.9 9.8 89 13-114 109-202 (298)
102 PLN02990 Probable pectinestera 28.5 93 0.002 29.3 4.5 35 20-54 347-386 (572)
103 PLN02170 probable pectinestera 28.3 5E+02 0.011 24.3 11.1 88 13-114 335-427 (529)
104 PLN02314 pectinesterase 27.9 2.6E+02 0.0057 26.4 7.3 83 19-114 392-480 (586)
105 PLN02416 probable pectinestera 27.8 2.6E+02 0.0056 26.2 7.2 83 19-114 344-432 (541)
106 PLN02698 Probable pectinestera 27.5 2.5E+02 0.0054 25.9 7.0 83 19-114 297-385 (497)
107 PLN02484 probable pectinestera 27.2 5.4E+02 0.012 24.3 10.5 83 19-114 387-475 (587)
108 PLN02665 pectinesterase family 26.2 4.6E+02 0.01 23.2 12.2 18 73-90 187-204 (366)
109 PF05342 Peptidase_M26_N: M26 25.9 39 0.00084 28.2 1.4 17 98-114 211-227 (250)
110 PRK10531 acyl-CoA thioesterase 25.9 5E+02 0.011 23.5 12.0 95 72-182 237-337 (422)
111 PLN02745 Putative pectinestera 25.0 3.6E+02 0.0079 25.5 7.7 83 19-114 399-487 (596)
112 PLN02488 probable pectinestera 24.4 5.8E+02 0.013 23.7 11.6 83 19-114 311-399 (509)
113 PLN02671 pectinesterase 24.3 2.6E+02 0.0056 24.7 6.2 40 43-90 159-203 (359)
114 PLN02468 putative pectinestera 24.0 3.4E+02 0.0074 25.5 7.3 83 19-114 372-460 (565)
115 PLN02990 Probable pectinestera 23.7 6.3E+02 0.014 23.9 10.5 83 19-114 374-462 (572)
116 PF04026 SpoVG: SpoVG; InterP 22.2 1.8E+02 0.0038 20.0 3.9 18 75-92 29-46 (84)
117 PLN02201 probable pectinestera 20.7 6.9E+02 0.015 23.3 11.5 82 19-113 320-407 (520)
No 1
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=8.1e-47 Score=332.88 Aligned_cols=205 Identities=47% Similarity=0.762 Sum_probs=184.9
Q ss_pred CeeCCCCCCCCCeeecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEce
Q 028660 1 MVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGA 80 (206)
Q Consensus 1 ~~~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~ 80 (206)
+|.+|...+||||||+.+|+||+|+||+|.++||||++|++++||+|+||+|..+|||+|||++++++.+.|+||+|+||
T Consensus 178 ~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n~ 257 (456)
T PLN03003 178 RINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNC 257 (456)
T ss_pred EEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEee
Confidence 47899999999999999999999999999999999999999999999999999999999999998765678999999999
Q ss_pred EEecCCceeEEEEecCCCCeEEeEEEEeEEEeCCCccEEEEeEeCCCCC--CCccCCceeEEeEEEEEeEEEEcCCCceE
Q 028660 81 KLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDD--PCKEQSSAVHIKNVVFKNIRGTSASDEAV 158 (206)
Q Consensus 81 ~~~~~~~gi~iks~~g~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~i~nIt~~ni~~~~~~~~~~ 158 (206)
++.++.+|+|||||.|+.|.++||+|+||+|+++.+||.|++.|..... .+....+...|+||+|+||+++...+.++
T Consensus 258 ~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai 337 (456)
T PLN03003 258 NFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGV 337 (456)
T ss_pred EEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceE
Confidence 9999999999999999999999999999999999999999999975321 12333456899999999999998777789
Q ss_pred EEEcCCCCCEEcEEEEeEEEEecC----CCCceeeeeeccceeCceecC-CCC
Q 028660 159 KLDCSKSYPCEAIVLENINLQSEE----DEPKALCNNVDDLAQRGSVFP-RCP 206 (206)
Q Consensus 159 ~i~g~~~~~i~ni~~~Nv~v~~~~----~~~~~~c~~~~~~~~~~~~~~-~~~ 206 (206)
.|.|.+..||+||+|+||.++... ..+.+.|.|| .+...++.+| +|+
T Consensus 338 ~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv-~G~~~~~~~~~~C~ 389 (456)
T PLN03003 338 DFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNV-RGASTIAVPGLECL 389 (456)
T ss_pred EEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEecc-ccccCceECCCCcc
Confidence 999999999999999999998762 2468999999 8888898777 585
No 2
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=7.6e-47 Score=333.18 Aligned_cols=200 Identities=71% Similarity=1.137 Sum_probs=183.8
Q ss_pred CeeCCCCCCCCCeeecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEce
Q 028660 1 MVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGA 80 (206)
Q Consensus 1 ~~~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~ 80 (206)
+|.+|...+||||||+.+|+||+|+||+|.+|||||+||+|++||+|+||+|..+|||+|||++.+...+.|+||+|+||
T Consensus 232 ~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~ 311 (431)
T PLN02218 232 VVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGA 311 (431)
T ss_pred EEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEcc
Confidence 47899999999999999999999999999999999999999999999999999999999999987654568999999999
Q ss_pred EEecCCceeEEEEecCCCCeEEeEEEEeEEEeCCCccEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCCceEEE
Q 028660 81 KLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKL 160 (206)
Q Consensus 81 ~~~~~~~gi~iks~~g~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i 160 (206)
++.++.+|+|||+|+|++|.|+||+|+||+|+++++||.|++.|.+.. .|...+....|+||+|+||+++.+...++.+
T Consensus 312 ~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~-~~~~~~s~v~I~nI~~~NI~gtsa~~~ai~l 390 (431)
T PLN02218 312 KLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKS-KCTSQQSAVQVKNVVYRNISGTSASDVAITF 390 (431)
T ss_pred EEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCC-CCCCCCCCeEEEEEEEEeEEEEecCCcEEEE
Confidence 999999999999999999999999999999999999999999997643 2444456789999999999999876678999
Q ss_pred EcCCCCCEEcEEEEeEEEEecCCCCceeeeeeccceeCceecCCCC
Q 028660 161 DCSKSYPCEAIVLENINLQSEEDEPKALCNNVDDLAQRGSVFPRCP 206 (206)
Q Consensus 161 ~g~~~~~i~ni~~~Nv~v~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 206 (206)
.|.++.||+||+|+||++++. ...|.|| .+...+.+.|.|.
T Consensus 391 ~cs~~~pc~nI~l~nV~i~~~----~~~c~n~-~~~~~~~~~p~c~ 431 (431)
T PLN02218 391 NCSKNYPCQGIVLDNVNIKGG----KATCTNA-NVVDKGAVSPQCN 431 (431)
T ss_pred EECCCCCEeeEEEEeEEEECC----eeeEEEe-eEEEcccCCCCCC
Confidence 999999999999999999864 4689999 9999999999994
No 3
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=2.8e-46 Score=330.85 Aligned_cols=205 Identities=56% Similarity=0.931 Sum_probs=186.3
Q ss_pred CeeCCCCCCCCCeeecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEce
Q 028660 1 MVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGA 80 (206)
Q Consensus 1 ~~~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~ 80 (206)
+|.+|...+||||||+.+|+||+|+||+|+++||||++|++++||+|+||+|..+|||+|||++.....+.|+||+|+||
T Consensus 217 ~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~ 296 (443)
T PLN02793 217 KVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGA 296 (443)
T ss_pred EEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEcc
Confidence 47899999999999999999999999999999999999999999999999999999999999976544467999999999
Q ss_pred EEecCCceeEEEEecCCCCeEEeEEEEeEEEeCCCccEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCCceEEE
Q 028660 81 KLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKL 160 (206)
Q Consensus 81 ~~~~~~~gi~iks~~g~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i 160 (206)
++.++.+|++||+|.|++|.|+||+|+||+|+++.+||.|++.|.....+|........|+||+|+||+++...+.++.|
T Consensus 297 ~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l 376 (443)
T PLN02793 297 FLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKF 376 (443)
T ss_pred EEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEE
Confidence 99999999999999999999999999999999999999999999765556665566789999999999999875568999
Q ss_pred EcCCCCCEEcEEEEeEEEEecC-CCCceeeeeeccceeCceecCC-CC
Q 028660 161 DCSKSYPCEAIVLENINLQSEE-DEPKALCNNVDDLAQRGSVFPR-CP 206 (206)
Q Consensus 161 ~g~~~~~i~ni~~~Nv~v~~~~-~~~~~~c~~~~~~~~~~~~~~~-~~ 206 (206)
.|.++.||+||+|+||+++... +...+.|.|+ ++...+.+.|+ |+
T Consensus 377 ~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~-~g~~~~~~~p~~C~ 423 (443)
T PLN02793 377 ACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEA-YGSSSGQVYPPPCF 423 (443)
T ss_pred EeCCCCCEeeEEEEeeEEEecCCCCCCcEEEcc-EEeECCeEcCCccc
Confidence 9999999999999999999875 4457899999 89999977776 85
No 4
>PLN03010 polygalacturonase
Probab=100.00 E-value=8.7e-46 Score=324.04 Aligned_cols=205 Identities=48% Similarity=0.832 Sum_probs=189.0
Q ss_pred CeeCCCCCCCCCeeecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEce
Q 028660 1 MVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGA 80 (206)
Q Consensus 1 ~~~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~ 80 (206)
+|.+|...+||||||+.+|+||+|+||+|.++||||++|+++.|+.|+++.|..+|||+|||+++++..+.|+||+|+||
T Consensus 197 ~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~ 276 (409)
T PLN03010 197 NILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVSDVHVTHC 276 (409)
T ss_pred EEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEee
Confidence 47889999999999999999999999999999999999999999999999999999999999998776778999999999
Q ss_pred EEecCCceeEEEEecCCCCeEEeEEEEeEEEeCCCccEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCCceEEE
Q 028660 81 KLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKL 160 (206)
Q Consensus 81 ~~~~~~~gi~iks~~g~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i 160 (206)
++.++.+|++||+|.|+.|.|+||+||||+|+++++||.|++.|.....+|..+.....|+||+|+||+++.....+++|
T Consensus 277 ~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l 356 (409)
T PLN03010 277 TFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITL 356 (409)
T ss_pred EEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEE
Confidence 99999999999999999999999999999999999999999999876666666678899999999999999877689999
Q ss_pred EcCCCCCEEcEEEEeEEEEecC-CCCceeeeeeccceeCceecCC-CC
Q 028660 161 DCSKSYPCEAIVLENINLQSEE-DEPKALCNNVDDLAQRGSVFPR-CP 206 (206)
Q Consensus 161 ~g~~~~~i~ni~~~Nv~v~~~~-~~~~~~c~~~~~~~~~~~~~~~-~~ 206 (206)
.|.+..||+||+|+||+++.+. ..+.+.|.|+ .+...+..+|+ |.
T Consensus 357 ~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv-~g~~~~~~~~~~C~ 403 (409)
T PLN03010 357 KCSAITHCKDVVMDDIDVTMENGEKPKVECQNV-EGESSDTDLMRDCF 403 (409)
T ss_pred EeCCCCCEeceEEEEEEEEecCCCccceEeeCc-cccccCCCCCCccc
Confidence 9999999999999999999876 4578999999 78888877777 83
No 5
>PLN02155 polygalacturonase
Probab=100.00 E-value=9.5e-46 Score=322.97 Aligned_cols=205 Identities=45% Similarity=0.812 Sum_probs=182.8
Q ss_pred CeeCCCCCCCCCeeecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEce
Q 028660 1 MVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGA 80 (206)
Q Consensus 1 ~~~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~ 80 (206)
+|.+|..++|+||||+.+|+||+|+||+|+++||||++|++++||+|+||+|..+|||+|||+++....+.++||+|+||
T Consensus 185 ~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~ 264 (394)
T PLN02155 185 KLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSS 264 (394)
T ss_pred EEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCcEEEEEEEee
Confidence 47899999999999999999999999999999999999999999999999999999999999864322356999999999
Q ss_pred EEecCCceeEEEEecC-CCCeEEeEEEEeEEEeCCCccEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCCceEE
Q 028660 81 KLSETANGVRIKTWQG-GSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVK 159 (206)
Q Consensus 81 ~~~~~~~gi~iks~~g-~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~ 159 (206)
++.++.+|++||+|.+ ++|.|+||+|+||+|+++++||.|++.|......++...+...|+||+|+||+++.+...+++
T Consensus 265 ~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~ 344 (394)
T PLN02155 265 VFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMK 344 (394)
T ss_pred EEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEE
Confidence 9999999999999864 689999999999999999999999999976443344344568999999999999988667899
Q ss_pred EEcCCCCCEEcEEEEeEEEEecC-CCCceeeeeeccceeCceecCC-CC
Q 028660 160 LDCSKSYPCEAIVLENINLQSEE-DEPKALCNNVDDLAQRGSVFPR-CP 206 (206)
Q Consensus 160 i~g~~~~~i~ni~~~Nv~v~~~~-~~~~~~c~~~~~~~~~~~~~~~-~~ 206 (206)
|.|.++.||+||+|+||+++... ....+.|.|+ .+...++.+|+ |.
T Consensus 345 l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~-~G~~~~~~~p~~c~ 392 (394)
T PLN02155 345 LVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNA-VGKSLGVIQPTSCL 392 (394)
T ss_pred EEeCCCCCEEEEEEEeeEEEecCCCccCcEEecc-EeEEcccCCccccc
Confidence 99999999999999999999886 4558999999 89999986775 84
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=2.5e-45 Score=321.50 Aligned_cols=205 Identities=45% Similarity=0.805 Sum_probs=179.9
Q ss_pred CeeCCCCCCCCCeeecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEce
Q 028660 1 MVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGA 80 (206)
Q Consensus 1 ~~~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~ 80 (206)
+|.+|...+||||||+++|+||+|+||+|+++||||++|++++||+|+||.|..+|||+|||.++.+..+.++||+|+||
T Consensus 195 ~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~ 274 (404)
T PLN02188 195 KISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDC 274 (404)
T ss_pred EEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEee
Confidence 47899999999999999999999999999999999999999999999999999999999999554322345999999999
Q ss_pred EEecCCceeEEEEecC--CCCeEEeEEEEeEEEeCCCccEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCCceE
Q 028660 81 KLSETANGVRIKTWQG--GSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAV 158 (206)
Q Consensus 81 ~~~~~~~gi~iks~~g--~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~ 158 (206)
++.++.+|++||+|.+ +.|.++||+|+||+|++++.||.|++.|...............|+||+|+||+++.....++
T Consensus 275 ~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~ 354 (404)
T PLN02188 275 TFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAV 354 (404)
T ss_pred EEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEE
Confidence 9999999999999965 45899999999999999999999999987543211112346899999999999998766789
Q ss_pred EEEcCCCCCEEcEEEEeEEEEecC--CCCceeeeeeccceeCceecCC-CC
Q 028660 159 KLDCSKSYPCEAIVLENINLQSEE--DEPKALCNNVDDLAQRGSVFPR-CP 206 (206)
Q Consensus 159 ~i~g~~~~~i~ni~~~Nv~v~~~~--~~~~~~c~~~~~~~~~~~~~~~-~~ 206 (206)
.+.|.++.||+||+|+||+++.+. ....+.|.++ .+...+.++|+ ||
T Consensus 355 ~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv-~g~~~g~~~p~~C~ 404 (404)
T PLN02188 355 LLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENV-RAKYIGTQIPPPCP 404 (404)
T ss_pred EEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcc-eeEEcccCcCCCCC
Confidence 999999999999999999998774 3457999999 89999888887 98
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=7.3e-43 Score=300.06 Aligned_cols=192 Identities=48% Similarity=0.853 Sum_probs=169.0
Q ss_pred CeeCCCCCCCCCeeecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEce
Q 028660 1 MVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGA 80 (206)
Q Consensus 1 ~~~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~ 80 (206)
+|.+|...+|+||||+.+|+||+|+||+|+++||||++|+++.||+|+||+|+.+||++|||++.++..+.|+||+|+||
T Consensus 132 ~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~ 211 (326)
T PF00295_consen 132 TINNPANSPNTDGIDIDSSKNVTIENCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENC 211 (326)
T ss_dssp EEEEGGGCTS--SEEEESEEEEEEESEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEE
T ss_pred EEEecCCCCCcceEEEEeeeEEEEEEeecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEE
Confidence 46788888999999999999999999999999999999998889999999999999999999988754456999999999
Q ss_pred EEecCCceeEEEEecCCCCeEEeEEEEeEEEeCCCccEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCCceEEE
Q 028660 81 KLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKL 160 (206)
Q Consensus 81 ~~~~~~~gi~iks~~g~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i 160 (206)
++.++.+|++||++++++|.|+||+||||+|+++.+||.|++.|... .++..++..+.|+||+|+||+++.....++++
T Consensus 212 ~i~~t~~gi~iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~-~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i 290 (326)
T PF00295_consen 212 TIINTDNGIRIKTWPGGGGYVSNITFENITMENVKYPIFIDQDYRDG-GPCGKPPSGVSISNITFRNITGTSAGSSAISI 290 (326)
T ss_dssp EEESESEEEEEEEETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTT-EESSCSSSSSEEEEEEEEEEEEEESTSEEEEE
T ss_pred EeeccceEEEEEEecccceEEeceEEEEEEecCCceEEEEEeccccc-cccCcccCCceEEEEEEEeeEEEeccceEEEE
Confidence 99999999999999999999999999999999999999999999762 23333345679999999999999987668999
Q ss_pred EcCCCCCEEcEEEEeEEEEecCCCCceeeeeeccc
Q 028660 161 DCSKSYPCEAIVLENINLQSEEDEPKALCNNVDDL 195 (206)
Q Consensus 161 ~g~~~~~i~ni~~~Nv~v~~~~~~~~~~c~~~~~~ 195 (206)
.|.++.||+||+|+||++++ . ...+.|++++.+
T Consensus 291 ~~~~~~~~~ni~f~nv~i~~-g-~~~~~c~nv~~~ 323 (326)
T PF00295_consen 291 DCSPGSPCSNITFENVNITG-G-KKPAQCKNVPSG 323 (326)
T ss_dssp E-BTTSSEEEEEEEEEEEES-S-BSESEEBSCCTT
T ss_pred EECCcCcEEeEEEEeEEEEc-C-CcCeEEECCCCC
Confidence 99999999999999999999 2 458999999543
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=1.6e-22 Score=181.35 Aligned_cols=114 Identities=38% Similarity=0.589 Sum_probs=103.2
Q ss_pred eeCCCCCCCCCeeecCCcccEEEEeeEEecCCceEEEcCC-----------CeeEEEEeeEEeCCCe-eEEEeccCCCCC
Q 028660 2 VTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSG-----------SQNVQAQDITCGPGHG-ISIGSLGKGNSN 69 (206)
Q Consensus 2 ~~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~iksg-----------s~nI~I~nc~~~~~~g-i~igS~~~gg~~ 69 (206)
|.++... |+||||+.+|+||+|++|+|+++||||++|++ ++||+|+||++..+|| +.+|||+.++
T Consensus 279 I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~gg-- 355 (542)
T COG5434 279 IDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGG-- 355 (542)
T ss_pred EECCCCC-CCCccccccceeEEEeccEEecCCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCc--
Confidence 3444444 99999999999999999999999999999996 5999999999999996 9999999875
Q ss_pred CcEEEEEEEceEEecCCceeEEEEecCCCCeEEeEEEEeEEEeCCCccEEE
Q 028660 70 AYVSEVTVDGAKLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIII 120 (206)
Q Consensus 70 ~~i~nI~~~n~~~~~~~~gi~iks~~g~~g~i~nI~~~ni~~~~~~~~i~i 120 (206)
++||+++||.|.++.+|||||+..+++|.++||+|++++|.++..+..+
T Consensus 356 --v~ni~ved~~~~~~d~GLRikt~~~~gG~v~nI~~~~~~~~nv~t~~~i 404 (542)
T COG5434 356 --VQNITVEDCVMDNTDRGLRIKTNDGRGGGVRNIVFEDNKMRNVKTKLSI 404 (542)
T ss_pred --eeEEEEEeeeeccCcceeeeeeecccceeEEEEEEecccccCcccceee
Confidence 9999999999999999999999999999999999999999998644444
No 9
>PLN02218 polygalacturonase ADPG
Probab=99.82 E-value=1.4e-18 Score=153.79 Aligned_cols=169 Identities=18% Similarity=0.307 Sum_probs=131.7
Q ss_pred eeecCCcccEEEEeeEEec-----CCceEEEcCCCeeEEEEeeEEeCC-CeeEEEeccCCCCCCcEEEEEEEceEEecCC
Q 028660 13 GIHVTNTQNIRITSSTIGT-----GDDCISIVSGSQNVQAQDITCGPG-HGISIGSLGKGNSNAYVSEVTVDGAKLSETA 86 (206)
Q Consensus 13 Gidi~~s~nV~I~n~~i~~-----~DD~i~iksgs~nI~I~nc~~~~~-~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~ 86 (206)
-+.+..|+||+|+|.+|.+ .-|+|.+.+ ++||+|+||++..+ ++|+|+|. .+||+|+||++.. .
T Consensus 217 ~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~s-s~nV~I~n~~I~tGDDcIaIksg--------s~nI~I~n~~c~~-G 286 (431)
T PLN02218 217 QISIEKCSNVQVSNVVVTAPADSPNTDGIHITN-TQNIRVSNSIIGTGDDCISIESG--------SQNVQINDITCGP-G 286 (431)
T ss_pred EEEEEceeeEEEEEEEEeCCCCCCCCCcEeecc-cceEEEEccEEecCCceEEecCC--------CceEEEEeEEEEC-C
Confidence 3566788999999999986 247899975 89999999999986 58999862 7899999999954 6
Q ss_pred ceeEEEEecC--CCCeEEeEEEEeEEEeCCCccEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCCceEEEEcC-
Q 028660 87 NGVRIKTWQG--GSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCS- 163 (206)
Q Consensus 87 ~gi~iks~~g--~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~- 163 (206)
+|+.|+|... ..+.|+||+++|+++.+..++++|+++. ...+.++||+|+||++.... .|+.|...
T Consensus 287 HGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~----------Gg~G~v~nI~f~ni~m~~V~-~pI~Idq~Y 355 (431)
T PLN02218 287 HGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQ----------GGSGTASNIIFQNIQMENVK-NPIIIDQDY 355 (431)
T ss_pred CCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecC----------CCCeEEEEEEEEeEEEEccc-ccEEEEeec
Confidence 9999999732 2478999999999999999999999862 24579999999999999886 67777421
Q ss_pred --C--------CCCEEcEEEEeEEEEecC-CCCceeeee---eccceeCceec
Q 028660 164 --K--------SYPCEAIVLENINLQSEE-DEPKALCNN---VDDLAQRGSVF 202 (206)
Q Consensus 164 --~--------~~~i~ni~~~Nv~v~~~~-~~~~~~c~~---~~~~~~~~~~~ 202 (206)
. ...++||+|+||+.+... .+..+.|.. .++..++++.+
T Consensus 356 ~~~~~~~~~~s~v~I~nI~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i 408 (431)
T PLN02218 356 CDKSKCTSQQSAVQVKNVVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNI 408 (431)
T ss_pred cCCCCCCCCCCCeEEEEEEEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEE
Confidence 0 123899999999998764 333455654 22345665554
No 10
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.81 E-value=5.5e-18 Score=150.21 Aligned_cols=168 Identities=20% Similarity=0.238 Sum_probs=132.1
Q ss_pred eecCCcccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeCC-CeeEEEeccCCCCCCcEEEEEEEceEEecCCc
Q 028660 14 IHVTNTQNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGPG-HGISIGSLGKGNSNAYVSEVTVDGAKLSETAN 87 (206)
Q Consensus 14 idi~~s~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~~-~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~ 87 (206)
+.+..|+||+|++.+|.+. -|+|.+.+ ++||+|+||.+..+ ++|+|++- .+||+|+||++.. .+
T Consensus 164 i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~-S~nV~I~n~~I~tGDDCIaiksg--------s~NI~I~n~~c~~-GH 233 (456)
T PLN03003 164 IHISECNYVTISSLRINAPESSPNTDGIDVGA-SSNVVIQDCIIATGDDCIAINSG--------TSNIHISGIDCGP-GH 233 (456)
T ss_pred EEEeccccEEEEEEEEeCCCCCCCCCcEeecC-cceEEEEecEEecCCCeEEeCCC--------CccEEEEeeEEEC-CC
Confidence 5667899999999999873 37899975 89999999999986 58999862 6899999999965 69
Q ss_pred eeEEEEecC--CCCeEEeEEEEeEEEeCCCccEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCCceEEEEcCC-
Q 028660 88 GVRIKTWQG--GSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSK- 164 (206)
Q Consensus 88 gi~iks~~g--~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~~- 164 (206)
|+.|+|... ..+.|+||+++|+++.+..++++|+++.+ ..+.++||+|+||++.... .|+.|....
T Consensus 234 GISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G----------g~G~v~nItf~nI~m~nV~-~pI~Idq~Y~ 302 (456)
T PLN03003 234 GISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQG----------GSGYARMITFNGITLDNVE-NPIIIDQFYN 302 (456)
T ss_pred CeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEecCcc-ceEEEEcccC
Confidence 999999732 23679999999999999999999998632 3478999999999999886 588773210
Q ss_pred -------------CCCEEcEEEEeEEEEecC-CCCceeeeee---ccceeCceec
Q 028660 165 -------------SYPCEAIVLENINLQSEE-DEPKALCNNV---DDLAQRGSVF 202 (206)
Q Consensus 165 -------------~~~i~ni~~~Nv~v~~~~-~~~~~~c~~~---~~~~~~~~~~ 202 (206)
...++||+|+||+.+... ....+.|+.. ++.+++++.|
T Consensus 303 ~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l 357 (456)
T PLN03003 303 GGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKI 357 (456)
T ss_pred CCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEE
Confidence 124899999999998765 3445666542 3445666554
No 11
>PLN02793 Probable polygalacturonase
Probab=99.80 E-value=1.2e-17 Score=148.57 Aligned_cols=168 Identities=20% Similarity=0.228 Sum_probs=130.0
Q ss_pred eecCCcccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeCC-CeeEEEeccCCCCCCcEEEEEEEceEEecCCc
Q 028660 14 IHVTNTQNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGPG-HGISIGSLGKGNSNAYVSEVTVDGAKLSETAN 87 (206)
Q Consensus 14 idi~~s~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~~-~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~ 87 (206)
+.+..|+||+|++.+|.+. -|+|.+.+ ++||+|+||++..+ ++|+|++. .+||+|+||++.. .+
T Consensus 203 i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~-s~nV~I~n~~I~~gDDcIaik~~--------s~nI~I~n~~c~~-Gh 272 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPATSPNTDGIHISA-SRGVVIKDSIVRTGDDCISIVGN--------SSRIKIRNIACGP-GH 272 (443)
T ss_pred EEEEccCcEEEEEEEEECCCCCCCCCcEeeec-cceEEEEeCEEeCCCCeEEecCC--------cCCEEEEEeEEeC-Cc
Confidence 5666788999999999763 47888875 89999999999986 58999762 6899999999955 58
Q ss_pred eeEEEEec--CCCCeEEeEEEEeEEEeCCCccEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCCceEEEEc---
Q 028660 88 GVRIKTWQ--GGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDC--- 162 (206)
Q Consensus 88 gi~iks~~--g~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g--- 162 (206)
|+.|+|.. ...+.|+||+++|+++.+..++++|+++.+ ..+.++||+|+||++.... .|+.|..
T Consensus 273 GisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g----------~~G~v~nItf~ni~m~nv~-~pI~I~q~Y~ 341 (443)
T PLN02793 273 GISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG----------GSGNASKITFQNIFMENVS-NPIIIDQYYC 341 (443)
T ss_pred cEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC----------CCEEEEEEEEEeEEEecCC-ceEEEEeeec
Confidence 99999962 234789999999999999999999998632 3578999999999999887 6887743
Q ss_pred CCC---------CCEEcEEEEeEEEEecC-CCCceeeee---eccceeCceec
Q 028660 163 SKS---------YPCEAIVLENINLQSEE-DEPKALCNN---VDDLAQRGSVF 202 (206)
Q Consensus 163 ~~~---------~~i~ni~~~Nv~v~~~~-~~~~~~c~~---~~~~~~~~~~~ 202 (206)
... ..++||+|+||+.+... ....+.|+. .++.+++++.|
T Consensus 342 ~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l 394 (443)
T PLN02793 342 DSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQL 394 (443)
T ss_pred CCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEE
Confidence 211 23899999999998754 334556653 22345665553
No 12
>PLN02155 polygalacturonase
Probab=99.80 E-value=8.3e-18 Score=147.45 Aligned_cols=169 Identities=14% Similarity=0.202 Sum_probs=130.3
Q ss_pred eecCCcccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeCC-CeeEEEeccCCCCCCcEEEEEEEceEEecCCc
Q 028660 14 IHVTNTQNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGPG-HGISIGSLGKGNSNAYVSEVTVDGAKLSETAN 87 (206)
Q Consensus 14 idi~~s~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~~-~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~ 87 (206)
+.+..|+||+|+++.|.+. -|+|.+.+ ++||+|+||++..+ ++|+||+ ..+||+|+|+++.. .+
T Consensus 171 i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~-s~nV~I~~~~I~~gDDcIaik~--------gs~nI~I~n~~c~~-Gh 240 (394)
T PLN02155 171 MTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQF-STGVTFTGSTVQTGDDCVAIGP--------GTRNFLITKLACGP-GH 240 (394)
T ss_pred EEEECeeeEEEEEEEEECCCCCCCCCcccccc-ceeEEEEeeEEecCCceEEcCC--------CCceEEEEEEEEEC-Cc
Confidence 5566788999999999863 27888875 89999999999986 5899976 26899999999975 69
Q ss_pred eeEEEEec--CCCCeEEeEEEEeEEEeCCCccEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCCceEEEEc---
Q 028660 88 GVRIKTWQ--GGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDC--- 162 (206)
Q Consensus 88 gi~iks~~--g~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g--- 162 (206)
|+.|+|.. ...+.|+||+++|+++.+..++++|+++.. .+.+.++||+|+||+++... .|+.|.-
T Consensus 241 GisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~---------~~gG~v~nI~f~ni~m~~v~-~pI~i~q~Y~ 310 (394)
T PLN02155 241 GVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR---------PSTGFVRNVFFQDLVMKNVE-NPIIIDQNYC 310 (394)
T ss_pred eEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecC---------CCCEEEEEEEEEeEEEcCcc-ccEEEEeccc
Confidence 99999962 135889999999999999999999998532 14579999999999999886 5887732
Q ss_pred C------C---CCCEEcEEEEeEEEEecC-CCCceeeee---eccceeCceec
Q 028660 163 S------K---SYPCEAIVLENINLQSEE-DEPKALCNN---VDDLAQRGSVF 202 (206)
Q Consensus 163 ~------~---~~~i~ni~~~Nv~v~~~~-~~~~~~c~~---~~~~~~~~~~~ 202 (206)
. + ...++||+|+||+.+... .+..+.|.. .++.+++++.|
T Consensus 311 ~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i 363 (394)
T PLN02155 311 PTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKL 363 (394)
T ss_pred CCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEE
Confidence 1 0 124899999999998875 233455542 22345555544
No 13
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.79 E-value=2.2e-17 Score=145.27 Aligned_cols=171 Identities=19% Similarity=0.253 Sum_probs=130.7
Q ss_pred eeecCCcccEEEEeeEEec-----CCceEEEcCCCeeEEEEeeEEeCC-CeeEEEeccCCCCCCcEEEEEEEceEEecCC
Q 028660 13 GIHVTNTQNIRITSSTIGT-----GDDCISIVSGSQNVQAQDITCGPG-HGISIGSLGKGNSNAYVSEVTVDGAKLSETA 86 (206)
Q Consensus 13 Gidi~~s~nV~I~n~~i~~-----~DD~i~iksgs~nI~I~nc~~~~~-~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~ 86 (206)
.+.+..|+||+|++.+|.+ .-|+|.+.+ ++||+|+||++..+ ++|++++. -+||+|+|+.+.. .
T Consensus 180 ~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~-s~nV~I~n~~I~~GDDcIaiksg--------~~nI~I~n~~c~~-g 249 (404)
T PLN02188 180 HIALVECRNFKGSGLKISAPSDSPNTDGIHIER-SSGVYISDSRIGTGDDCISIGQG--------NSQVTITRIRCGP-G 249 (404)
T ss_pred EEEEEccccEEEEEEEEeCCCCCCCCCcEeeeC-cccEEEEeeEEeCCCcEEEEccC--------CccEEEEEEEEcC-C
Confidence 3566788999999999986 247899976 89999999999986 58999862 5799999999954 6
Q ss_pred ceeEEEEec--CCCCeEEeEEEEeEEEeCCCccEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCCceEEEEc--
Q 028660 87 NGVRIKTWQ--GGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDC-- 162 (206)
Q Consensus 87 ~gi~iks~~--g~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g-- 162 (206)
+|+.|+|.. ...+.|+||+|+|+++.+..++++|+++... ...+.++||+|+||++.... .|+.|.-
T Consensus 250 hGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~--------~~~G~v~nI~f~ni~m~~v~-~pI~i~~~Y 320 (404)
T PLN02188 250 HGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANS--------PGKSAATNMTFENIVMNNVT-NPIIIDQKY 320 (404)
T ss_pred CcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCC--------CCceEEEEEEEEeEEecCcc-ceEEEEccc
Confidence 999999852 2247799999999999999999999986321 13578999999999999886 5877742
Q ss_pred -C---------CCCCEEcEEEEeEEEEecC-CCCceeeee---eccceeCceec
Q 028660 163 -S---------KSYPCEAIVLENINLQSEE-DEPKALCNN---VDDLAQRGSVF 202 (206)
Q Consensus 163 -~---------~~~~i~ni~~~Nv~v~~~~-~~~~~~c~~---~~~~~~~~~~~ 202 (206)
. ....++||+|+||+.+... .+..+.|.. .++.+++++.|
T Consensus 321 ~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i 374 (404)
T PLN02188 321 CPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHL 374 (404)
T ss_pred cCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEE
Confidence 1 1134899999999998864 233455543 22346666555
No 14
>PLN03010 polygalacturonase
Probab=99.77 E-value=5.7e-17 Score=142.63 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=123.5
Q ss_pred eecCCcccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeCC-CeeEEEeccCCCCCCcEEEEEEEceEEecCCc
Q 028660 14 IHVTNTQNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGPG-HGISIGSLGKGNSNAYVSEVTVDGAKLSETAN 87 (206)
Q Consensus 14 idi~~s~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~~-~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~ 87 (206)
+.+..|+||+|++..|.+. -|+|.+.+ ++||+|+||++..+ ++|+|++. -+++.|+++.+.. .+
T Consensus 183 i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~-s~nV~I~n~~I~~gDDcIaiksg--------s~ni~I~~~~C~~-gH 252 (409)
T PLN03010 183 ISIKTCNYVAISKINILAPETSPNTDGIDISY-STNINIFDSTIQTGDDCIAINSG--------SSNINITQINCGP-GH 252 (409)
T ss_pred EEEeccccEEEEEEEEeCCCCCCCCCceeeec-cceEEEEeeEEecCCCeEEecCC--------CCcEEEEEEEeEC-cC
Confidence 5667889999999999863 47888875 89999999999986 58999873 3467777777754 68
Q ss_pred eeEEEEecC--CCCeEEeEEEEeEEEeCCCccEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCCceEEEEc---
Q 028660 88 GVRIKTWQG--GSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDC--- 162 (206)
Q Consensus 88 gi~iks~~g--~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g--- 162 (206)
|+.|+|... ....|+||+|+|+++.+..++++|+.+.+ ..+.++||+|+||++.... .|+.|.-
T Consensus 253 GisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G----------~~G~v~nItf~nI~m~~v~-~pI~I~q~Y~ 321 (409)
T PLN03010 253 GISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQG----------GQGYARNISFENITLINTK-NPIIIDQQYI 321 (409)
T ss_pred CEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecC----------CCEEEEEeEEEeEEEecCC-ccEEEEeecc
Confidence 999999732 23579999999999999999999998632 3579999999999999876 6887732
Q ss_pred CC---------CCCEEcEEEEeEEEEecC-CCCceeeee
Q 028660 163 SK---------SYPCEAIVLENINLQSEE-DEPKALCNN 191 (206)
Q Consensus 163 ~~---------~~~i~ni~~~Nv~v~~~~-~~~~~~c~~ 191 (206)
.. ...++||+|+|++.+... ....+.|+.
T Consensus 322 ~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~ 360 (409)
T PLN03010 322 DKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSA 360 (409)
T ss_pred CCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeCC
Confidence 21 124899999999998765 455667643
No 15
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.77 E-value=4.6e-17 Score=140.17 Aligned_cols=156 Identities=25% Similarity=0.329 Sum_probs=123.5
Q ss_pred eecCCcccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeCCC-eeEEEeccCCCCCCcEEEEEEEceEEecCCc
Q 028660 14 IHVTNTQNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGPGH-GISIGSLGKGNSNAYVSEVTVDGAKLSETAN 87 (206)
Q Consensus 14 idi~~s~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~~~-gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~ 87 (206)
+.+..|+||+|++..|.+. -|+|.+.+ ++||+|+||.+..++ +|+|++. -.||+++||++.+ .+
T Consensus 118 ~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~-s~nv~I~n~~i~~gDD~Iaiks~--------~~ni~v~n~~~~~-gh 187 (326)
T PF00295_consen 118 IHINDCDNVTISNITINNPANSPNTDGIDIDS-SKNVTIENCFIDNGDDCIAIKSG--------SGNILVENCTCSG-GH 187 (326)
T ss_dssp EEEESEEEEEEESEEEEEGGGCTS--SEEEES-EEEEEEESEEEESSSESEEESSE--------ECEEEEESEEEES-SS
T ss_pred EEEEccCCeEEcceEEEecCCCCCcceEEEEe-eeEEEEEEeecccccCccccccc--------ccceEEEeEEEec-cc
Confidence 6677899999999999863 47899985 899999999999865 8999763 3399999999965 68
Q ss_pred eeEEEEecCCC--CeEEeEEEEeEEEeCCCccEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCCceEEEEc---
Q 028660 88 GVRIKTWQGGS--GYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDC--- 162 (206)
Q Consensus 88 gi~iks~~g~~--g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g--- 162 (206)
|+.|++..... ..|+||+|+|+++.+..++++|+++. ...+.++||+|+||+++... .|+.+.-
T Consensus 188 GisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~----------~~~G~v~nI~f~ni~~~~v~-~pi~i~~~y~ 256 (326)
T PF00295_consen 188 GISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP----------GGGGYVSNITFENITMENVK-YPIFIDQDYR 256 (326)
T ss_dssp EEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET----------TTSEEEEEEEEEEEEEEEES-EEEEEEEEEC
T ss_pred cceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEec----------ccceEEeceEEEEEEecCCc-eEEEEEeccc
Confidence 99999974321 36999999999999999999999852 25689999999999999887 7887742
Q ss_pred C------C--CCCEEcEEEEeEEEEecC-CCCceeee
Q 028660 163 S------K--SYPCEAIVLENINLQSEE-DEPKALCN 190 (206)
Q Consensus 163 ~------~--~~~i~ni~~~Nv~v~~~~-~~~~~~c~ 190 (206)
. + ...++||+|+||+.+... .+..+.|.
T Consensus 257 ~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~ 293 (326)
T PF00295_consen 257 DGGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCS 293 (326)
T ss_dssp TTEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-B
T ss_pred cccccCcccCCceEEEEEEEeeEEEeccceEEEEEEC
Confidence 1 1 135999999999999886 33334443
No 16
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=1e-10 Score=105.75 Aligned_cols=129 Identities=18% Similarity=0.176 Sum_probs=104.8
Q ss_pred CeeecCCcccEEEEeeEEecCCc----eEEEcCCCeeEEEEeeEEeCC-CeeEEEeccCCC---CCCcEEEEEEEceEEe
Q 028660 12 DGIHVTNTQNIRITSSTIGTGDD----CISIVSGSQNVQAQDITCGPG-HGISIGSLGKGN---SNAYVSEVTVDGAKLS 83 (206)
Q Consensus 12 DGidi~~s~nV~I~n~~i~~~DD----~i~iksgs~nI~I~nc~~~~~-~gi~igS~~~gg---~~~~i~nI~~~n~~~~ 83 (206)
=++++..|+|++++|..|.+.++ ++.+.+ ++|++|++|+|..+ ++|+++|-.... ....-+||.|+||.|.
T Consensus 262 ~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~ 340 (542)
T COG5434 262 WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFS 340 (542)
T ss_pred EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCceEEeecccCCcccccccccccEEEecceec
Confidence 46777889999999999998654 888886 99999999999986 589998842211 1356799999999997
Q ss_pred cCCceeEEEEecCCCCeEEeEEEEeEEEeCCCccEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcC
Q 028660 84 ETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSA 153 (206)
Q Consensus 84 ~~~~gi~iks~~g~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~ 153 (206)
..-.++.+.++. .|.++||++||+.|.+..++++|+.... .++.++||+|++++....
T Consensus 341 ~ghG~~v~Gse~--~ggv~ni~ved~~~~~~d~GLRikt~~~----------~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 341 SGHGGLVLGSEM--GGGVQNITVEDCVMDNTDRGLRIKTNDG----------RGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred ccccceEeeeec--CCceeEEEEEeeeeccCcceeeeeeecc----------cceeEEEEEEecccccCc
Confidence 655568888884 4999999999999999999999998632 347899999998887765
No 17
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.20 E-value=7e-10 Score=98.93 Aligned_cols=156 Identities=22% Similarity=0.233 Sum_probs=85.9
Q ss_pred CCCCeeecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCC---eeEEEeccCCCCCCcEEEEEEEceEEecC
Q 028660 9 PNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGH---GISIGSLGKGNSNAYVSEVTVDGAKLSET 85 (206)
Q Consensus 9 ~n~DGidi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~---gi~igS~~~gg~~~~i~nI~~~n~~~~~~ 85 (206)
.|+||+.+.. +-+|+|||+++.||+|-+.. +++.|+||++|..+ -|.+|...+ .++||.|+|+.++.+
T Consensus 371 ~qtDGi~ly~--nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~pr-----~isnv~veni~IIh~ 441 (582)
T PF03718_consen 371 FQTDGIELYP--NSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWTPR-----NISNVSVENIDIIHN 441 (582)
T ss_dssp TT----B--T--T-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE-
T ss_pred eccCCccccC--CCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecccc-----ccCceEEeeeEEEee
Confidence 5999999985 67789999999999998874 69999999999742 288887543 599999999999976
Q ss_pred C---------ceeEEEEecC----C------CCeEEeEEEEeEEEeCCC-ccEEEEeEeCCCCCCCccCCceeEEeEEEE
Q 028660 86 A---------NGVRIKTWQG----G------SGYASNIIFQNIDMVNVK-NPIIIDQNYCDQDDPCKEQSSAVHIKNVVF 145 (206)
Q Consensus 86 ~---------~gi~iks~~g----~------~g~i~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~ 145 (206)
. .+|.-.+... . .-.||+++|+|+++|+.- ..+.|... .......|+|+.|
T Consensus 442 r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~pl---------qn~~nl~ikN~~~ 512 (582)
T PF03718_consen 442 RWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPL---------QNYDNLVIKNVHF 512 (582)
T ss_dssp --SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--S---------EEEEEEEEEEEEE
T ss_pred eeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeec---------CCCcceEEEEeec
Confidence 2 3444443321 1 136899999999999863 34445321 0012234444444
Q ss_pred EeEEEEcCCCceEEEEc------CCCCCEEcEEEEeEEEEecC
Q 028660 146 KNIRGTSASDEAVKLDC------SKSYPCEAIVLENINLQSEE 182 (206)
Q Consensus 146 ~ni~~~~~~~~~~~i~g------~~~~~i~ni~~~Nv~v~~~~ 182 (206)
..+.+.........+.. .......+|.|+|++|.+++
T Consensus 513 ~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~~ 555 (582)
T PF03718_consen 513 ESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGEK 555 (582)
T ss_dssp CEET-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETTEE
T ss_pred ccccCcccccceeeccccccccccccccccceEEEeEEECCEE
Confidence 43322211111122211 11235899999999998875
No 18
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.29 E-value=1e-05 Score=61.13 Aligned_cols=134 Identities=26% Similarity=0.411 Sum_probs=76.6
Q ss_pred CeeecCCcccEEEEeeEEec-CCceEEEcCCCeeEEEEeeEEeC-CCeeEEEeccCCCCCCcEEEEEEEceEEecCCcee
Q 028660 12 DGIHVTNTQNIRITSSTIGT-GDDCISIVSGSQNVQAQDITCGP-GHGISIGSLGKGNSNAYVSEVTVDGAKLSETANGV 89 (206)
Q Consensus 12 DGidi~~s~nV~I~n~~i~~-~DD~i~iksgs~nI~I~nc~~~~-~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~gi 89 (206)
|||.+....+++|++|+|.. +.++|.+.. ...++|+||++.. ..||.+.. -.+++++++++.+...++
T Consensus 1 ~Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~-~~~~~i~n~~i~~~~~gi~~~~---------~~~~~i~~~~~~~~~~~i 70 (158)
T PF13229_consen 1 DGISINNGSNVTIRNCTISNNGGDGIHVSG-SSNITIENCTISNGGYGIYVSG---------GSNVTISNNTISDNGSGI 70 (158)
T ss_dssp -CEEETTCEC-EEESEEEESSSSECEEE-S-SCESEEES-EEESSTTSEEEEC---------CES-EEES-EEES-SEEE
T ss_pred CEEEEECCcCeEEeeeEEEeCCCeEEEEEc-CCCeEEECeEEECCCcEEEEec---------CCCeEEECeEEEEccceE
Confidence 79999999999999999998 688999976 5568999999987 46888843 367888888888765444
Q ss_pred EEEEecCCCCeEEeEEEEeEEEeCCCc-cEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCCceEEEEcCCCCCE
Q 028660 90 RIKTWQGGSGYASNIIFQNIDMVNVKN-PIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSKSYPC 168 (206)
Q Consensus 90 ~iks~~g~~g~i~nI~~~ni~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~~~~~i 168 (206)
.+. .. .++++++.++.+... +|.+.. .-++++|++-++......++++.... =
T Consensus 71 ~~~--~~-----~~~~i~~~~i~~~~~~gi~~~~----------------~~~~~~i~~n~~~~~~~~gi~~~~~~---~ 124 (158)
T PF13229_consen 71 YVS--GS-----SNITIENNRIENNGDYGIYISN----------------SSSNVTIENNTIHNNGGSGIYLEGGS---S 124 (158)
T ss_dssp ECC--S------CS-EEES-EEECSSS-SCE-TC----------------EECS-EEES-EEECCTTSSCEEEECC----
T ss_pred EEE--ec-----CCceecCcEEEcCCCccEEEec----------------cCCCEEEEeEEEEeCcceeEEEECCC---C
Confidence 443 22 455667777766543 444421 12345555555555443445554322 1
Q ss_pred EcEEEEeEEEEec
Q 028660 169 EAIVLENINLQSE 181 (206)
Q Consensus 169 ~ni~~~Nv~v~~~ 181 (206)
..++|++-++...
T Consensus 125 ~~~~i~~n~i~~~ 137 (158)
T PF13229_consen 125 PNVTIENNTISNN 137 (158)
T ss_dssp -S-EEECEEEECE
T ss_pred CeEEEEEEEEEeC
Confidence 1444455554443
No 19
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.19 E-value=3.1e-05 Score=64.06 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=27.4
Q ss_pred CCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeC
Q 028660 17 TNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGP 54 (206)
Q Consensus 17 ~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~ 54 (206)
.+.+++.|+||+|..| --++| .++||.+.+|.|.+
T Consensus 16 f~~~d~~l~~~~f~dG--ES~LK-es~nI~~~~~~F~~ 50 (277)
T PF12541_consen 16 FGSHDLRLENCTFADG--ESPLK-ESRNIELKNCIFKW 50 (277)
T ss_pred cccCCCEEEeeEEeCC--Ccccc-cccceEEECCEEee
Confidence 3688999999999944 45667 48899999998754
No 20
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.06 E-value=0.0001 Score=66.49 Aligned_cols=129 Identities=22% Similarity=0.310 Sum_probs=70.3
Q ss_pred ceEEEcCCCeeEEEEeeEEeC-CCeeEEEeccCCCCCCcEEEEEEEceEEecCCceeEEEEecCCCCeEEeEEEEeEEEe
Q 028660 34 DCISIVSGSQNVQAQDITCGP-GHGISIGSLGKGNSNAYVSEVTVDGAKLSETANGVRIKTWQGGSGYASNIIFQNIDMV 112 (206)
Q Consensus 34 D~i~iksgs~nI~I~nc~~~~-~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~gi~iks~~g~~g~i~nI~~~ni~~~ 112 (206)
|++-+.. |=+|+||.++. .++|++ +-+++.++|++++...+|--|..- .....++||+|+|+.+-
T Consensus 374 DGi~ly~---nS~i~dcF~h~nDD~iKl----------YhS~v~v~~~ViWk~~Ngpiiq~G-W~pr~isnv~veni~II 439 (582)
T PF03718_consen 374 DGIELYP---NSTIRDCFIHVNDDAIKL----------YHSNVSVSNTVIWKNENGPIIQWG-WTPRNISNVSVENIDII 439 (582)
T ss_dssp ---B--T---T-EEEEEEEEESS-SEE------------STTEEEEEEEEEE-SSS-SEE---CS---EEEEEEEEEEEE
T ss_pred CCccccC---CCeeeeeEEEecCchhhe----------eecCcceeeeEEEecCCCCeEEee-ccccccCceEEeeeEEE
Confidence 4444443 34566777764 456665 356788888888887665445432 12467999999999997
Q ss_pred CCC---------ccEEE-EeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCCceEEEEcCCCCCEEcEEEEeEEEE
Q 028660 113 NVK---------NPIII-DQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSKSYPCEAIVLENINLQ 179 (206)
Q Consensus 113 ~~~---------~~i~i-~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~~~~~i~ni~~~Nv~v~ 179 (206)
..+ .+|.- ..+|.+...+ ....+...|++++|+|+++.+.-...+.|. +-..-+|+.++||.+.
T Consensus 440 h~r~~~~~~~~n~~I~~ss~~y~~~~s~-~~adp~~ti~~~~~~nv~~EG~~~~l~ri~--plqn~~nl~ikN~~~~ 513 (582)
T PF03718_consen 440 HNRWIWHNNYVNTAILGSSPFYDDMAST-KTADPSTTIRNMTFSNVRCEGMCPCLFRIY--PLQNYDNLVIKNVHFE 513 (582)
T ss_dssp E---SSGGCTTT-ECEEE--BTTS-SSS---BEEEEEEEEEEEEEEEEECCE-ECEEE----SEEEEEEEEEEEEEC
T ss_pred eeeeecccCCCCceeEecccccccccCC-CCCCcccceeeEEEEeEEEecccceeEEEe--ecCCCcceEEEEeecc
Confidence 653 12332 2346433322 122346789999999999998753445663 3334567778888887
No 21
>smart00656 Amb_all Amb_all domain.
Probab=97.97 E-value=0.00035 Score=55.83 Aligned_cols=92 Identities=21% Similarity=0.205 Sum_probs=52.6
Q ss_pred eeecCCcccEEEEeeEEecC-------CceEEEcCCCeeEEEEeeEEeCC----------Ce-eEEEeccCCCCCCcEEE
Q 028660 13 GIHVTNTQNIRITSSTIGTG-------DDCISIVSGSQNVQAQDITCGPG----------HG-ISIGSLGKGNSNAYVSE 74 (206)
Q Consensus 13 Gidi~~s~nV~I~n~~i~~~-------DD~i~iksgs~nI~I~nc~~~~~----------~g-i~igS~~~gg~~~~i~n 74 (206)
|+.+..++||.|+|..|+.. .|+|.+. +++||.|.+|+|.++ ++ +.++ ....+
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~-~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~--------~~s~~ 103 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISID-GSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIK--------NGSTY 103 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEe-CCCeEEEEccEeEcceeccCCCCCCCccEEEC--------ccccc
Confidence 55666566777777777753 3667763 467777777777654 22 2221 12567
Q ss_pred EEEEceEEecCCceeEEEEecC-CCCeEEeEEEEeEEEeC
Q 028660 75 VTVDGAKLSETANGVRIKTWQG-GSGYASNIIFQNIDMVN 113 (206)
Q Consensus 75 I~~~n~~~~~~~~gi~iks~~g-~~g~i~nI~~~ni~~~~ 113 (206)
|++++|.+.+...+.-+..... ......+|+|.+..+.+
T Consensus 104 vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~ 143 (190)
T smart00656 104 VTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGN 143 (190)
T ss_pred EEEECceEecCCEEEEEccCCCccccccceEEEECcEEcC
Confidence 7777777766555665554321 11123455665555544
No 22
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.77 E-value=0.00024 Score=61.15 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=6.3
Q ss_pred eeecCCcccEEEEeeEE
Q 028660 13 GIHVTNTQNIRITSSTI 29 (206)
Q Consensus 13 Gidi~~s~nV~I~n~~i 29 (206)
||-+..|++++|+++.+
T Consensus 79 GI~v~~s~~i~I~n~~i 95 (314)
T TIGR03805 79 GVKVKGSDGIIIRRLRV 95 (314)
T ss_pred eEEEeCCCCEEEEeeEE
Confidence 33333333333333333
No 23
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.69 E-value=0.00049 Score=59.20 Aligned_cols=95 Identities=18% Similarity=0.197 Sum_probs=70.8
Q ss_pred CCCCeeecCCcccEEEEeeEEecC-CceEEEcCCCeeEEEEeeEEeCC-CeeEEEeccCCCCCCcEEEEEEEceEEecCC
Q 028660 9 PNTDGIHVTNTQNIRITSSTIGTG-DDCISIVSGSQNVQAQDITCGPG-HGISIGSLGKGNSNAYVSEVTVDGAKLSETA 86 (206)
Q Consensus 9 ~n~DGidi~~s~nV~I~n~~i~~~-DD~i~iksgs~nI~I~nc~~~~~-~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~ 86 (206)
...+||.+..|++++|++|+++.. |++|.++. ++|++|+|++++.. .||.+-. ..++.+++..+++..
T Consensus 105 ~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~~---------S~~~~v~~N~~~~N~ 174 (314)
T TIGR03805 105 NGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIEN---------SQNADVYNNIATNNT 174 (314)
T ss_pred CCcceEEEeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEEe---------cCCcEEECCEEeccc
Confidence 357899999999999999999985 45899975 89999999999875 5888842 456778888888877
Q ss_pred ceeEEEEecCC-CCeEEeEEEEeEEEeC
Q 028660 87 NGVRIKTWQGG-SGYASNIIFQNIDMVN 113 (206)
Q Consensus 87 ~gi~iks~~g~-~g~i~nI~~~ni~~~~ 113 (206)
.|+.+-..++. ...-+++++++=++.+
T Consensus 175 ~Gi~v~~~p~~~~~~s~~~~v~~N~i~~ 202 (314)
T TIGR03805 175 GGILVFDLPGLPQPGGSNVRVFDNIIFD 202 (314)
T ss_pred eeEEEeecCCCCcCCccceEEECCEEEC
Confidence 78888654432 1223556665555543
No 24
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.59 E-value=0.00089 Score=50.32 Aligned_cols=97 Identities=27% Similarity=0.428 Sum_probs=67.4
Q ss_pred CCCeeecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCC-eeEEEeccCCCCCCcEEEEEEEceEEecCCc-
Q 028660 10 NTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGH-GISIGSLGKGNSNAYVSEVTVDGAKLSETAN- 87 (206)
Q Consensus 10 n~DGidi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~-gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~- 87 (206)
..+|+.+..+..++|++|.|..+..++.+.. ..++++++|++.... |+.+- ...+++++++.+.+...
T Consensus 22 ~~~gi~~~~~~~~~i~n~~i~~~~~gi~~~~-~~~~~i~~~~~~~~~~~i~~~---------~~~~~~i~~~~i~~~~~~ 91 (158)
T PF13229_consen 22 GGDGIHVSGSSNITIENCTISNGGYGIYVSG-GSNVTISNNTISDNGSGIYVS---------GSSNITIENNRIENNGDY 91 (158)
T ss_dssp SSECEEE-SSCESEEES-EEESSTTSEEEEC-CES-EEES-EEES-SEEEECC---------S-CS-EEES-EEECSSS-
T ss_pred CCeEEEEEcCCCeEEECeEEECCCcEEEEec-CCCeEEECeEEEEccceEEEE---------ecCCceecCcEEEcCCCc
Confidence 5789999999899999999999888899875 589999999998765 45552 26778899999988766
Q ss_pred eeEEEEecCCCCeEEeEEEEeEEEeCCC-ccEEEEe
Q 028660 88 GVRIKTWQGGSGYASNIIFQNIDMVNVK-NPIIIDQ 122 (206)
Q Consensus 88 gi~iks~~g~~g~i~nI~~~ni~~~~~~-~~i~i~~ 122 (206)
|+.+.. .-.++++++.++.+.. .++.+..
T Consensus 92 gi~~~~------~~~~~~i~~n~~~~~~~~gi~~~~ 121 (158)
T PF13229_consen 92 GIYISN------SSSNVTIENNTIHNNGGSGIYLEG 121 (158)
T ss_dssp SCE-TC------EECS-EEES-EEECCTTSSCEEEE
T ss_pred cEEEec------cCCCEEEEeEEEEeCcceeEEEEC
Confidence 787753 2356888999998876 5666654
No 25
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=97.50 E-value=0.00031 Score=58.17 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=26.4
Q ss_pred EEEEEEEceEEecCCceeEEEEecCCCCeEEeEEEEeEEEeCCCcc
Q 028660 72 VSEVTVDGAKLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNP 117 (206)
Q Consensus 72 i~nI~~~n~~~~~~~~gi~iks~~g~~g~i~nI~~~ni~~~~~~~~ 117 (206)
.+|+++.||++.+. +| .-+++|++++|++|.+.+.+
T Consensus 193 SkNltliNC~I~g~-Qp---------LCY~~~L~l~nC~~~~tdla 228 (277)
T PF12541_consen 193 SKNLTLINCTIEGT-QP---------LCYCDNLVLENCTMIDTDLA 228 (277)
T ss_pred cCCeEEEEeEEecc-Cc---------cEeecceEEeCcEeecceee
Confidence 67888888888664 33 35678889999999876544
No 26
>smart00656 Amb_all Amb_all domain.
Probab=97.48 E-value=0.0048 Score=49.27 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=57.8
Q ss_pred CCCCeeecCCcccEEEEeeEEecC----------CceEEEcCCCeeEEEEeeEEeCC-CeeEEEeccCCCCCCcEEEEEE
Q 028660 9 PNTDGIHVTNTQNIRITSSTIGTG----------DDCISIVSGSQNVQAQDITCGPG-HGISIGSLGKGNSNAYVSEVTV 77 (206)
Q Consensus 9 ~n~DGidi~~s~nV~I~n~~i~~~----------DD~i~iksgs~nI~I~nc~~~~~-~gi~igS~~~gg~~~~i~nI~~ 77 (206)
.+.|+|.+.++++|.|++|.+..+ |+.+.++.++.+|+|++|+|..- .++-+|+..... .....+|++
T Consensus 58 ~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~-~~~~~~vT~ 136 (190)
T smart00656 58 SDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDT-DDGKMRVTI 136 (190)
T ss_pred CCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCcc-ccccceEEE
Confidence 477999999999999999999986 66778888889999999999764 478888642211 112457888
Q ss_pred EceEEecC
Q 028660 78 DGAKLSET 85 (206)
Q Consensus 78 ~n~~~~~~ 85 (206)
.++.+.+.
T Consensus 137 h~N~~~~~ 144 (190)
T smart00656 137 AHNYFGNL 144 (190)
T ss_pred ECcEEcCc
Confidence 88888663
No 27
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.43 E-value=0.0058 Score=50.00 Aligned_cols=93 Identities=24% Similarity=0.259 Sum_probs=65.7
Q ss_pred CeeecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCC-CeeEEEeccCCCCCCcEEEEEEEceEEecCCceeE
Q 028660 12 DGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPG-HGISIGSLGKGNSNAYVSEVTVDGAKLSETANGVR 90 (206)
Q Consensus 12 DGidi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~-~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~gi~ 90 (206)
+|+.+..++++.|++..+....+++.+.. +.+++|+++++... .||.+.. .++.+++++.+.+...|+.
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~~~~gi~~~~-s~~~~I~~n~i~~~~~GI~~~~---------s~~~~i~~n~i~~n~~Gi~ 83 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISNSRDGIYVEN-SDNNTISNNTISNNRYGIHLMG---------SSNNTIENNTISNNGYGIY 83 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEeCCCEEEEEE-cCCeEEEeeEEECCCeEEEEEc---------cCCCEEEeEEEEccCCCEE
Confidence 89999988899999999998888886653 78899999998865 5887743 3446677777777667777
Q ss_pred EEEecCCCCeEEeEEEEeEEEeCCCccEEEE
Q 028660 91 IKTWQGGSGYASNIIFQNIDMVNVKNPIIID 121 (206)
Q Consensus 91 iks~~g~~g~i~nI~~~ni~~~~~~~~i~i~ 121 (206)
+.... +.++++-++.+...+|.+.
T Consensus 84 l~~s~-------~~~I~~N~i~~n~~GI~l~ 107 (236)
T PF05048_consen 84 LMGSS-------NNTISNNTISNNGYGIYLY 107 (236)
T ss_pred EEcCC-------CcEEECCEecCCCceEEEe
Confidence 76542 2255555555544455443
No 28
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.27 E-value=0.008 Score=48.09 Aligned_cols=107 Identities=26% Similarity=0.309 Sum_probs=60.9
Q ss_pred EEEEeeEEecCC-------ceEEEcCCCeeEEEEeeEEeC--CCeeEEEeccCCC-CCC-cEEEEEEEc---------eE
Q 028660 22 IRITSSTIGTGD-------DCISIVSGSQNVQAQDITCGP--GHGISIGSLGKGN-SNA-YVSEVTVDG---------AK 81 (206)
Q Consensus 22 V~I~n~~i~~~D-------D~i~iksgs~nI~I~nc~~~~--~~gi~igS~~~gg-~~~-~i~nI~~~n---------~~ 81 (206)
+.|+|..|.... .++.+.+ +++++|+||.+.. .+|+.+....... ... ..+++.+++ +.
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~-~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNS-SQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCI 172 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETT-EEEEEEEEEEEES-SS-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEe-CCeEEEEeEEEEccCccEEEEEccccCcEeecccceeeeeccceeEEEECCcc
Confidence 448888888764 2344443 7899999999875 3577775211100 001 122444443 33
Q ss_pred EecCCceeEEEEecCCCCeEEeEEEEeEEEeC-CCccEEEEeEeCCCCCCCccCCceeEEeEEEEEeEE
Q 028660 82 LSETANGVRIKTWQGGSGYASNIIFQNIDMVN-VKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIR 149 (206)
Q Consensus 82 ~~~~~~gi~iks~~g~~g~i~nI~~~ni~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~ 149 (206)
+.....|+...+ ++++++|+.+++ ...+|.+... ....|+|++|+|..
T Consensus 173 ~~~~~~g~~~~~--------~~~~i~n~~~~~~~~~gi~i~~~------------~~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 173 FNGGDNGIILGN--------NNITISNNTFEGNCGNGINIEGG------------SNIIISNNTIENCD 221 (225)
T ss_dssp EESSSCSEECEE--------EEEEEECEEEESSSSESEEEEEC------------SEEEEEEEEEESSS
T ss_pred ccCCCceeEeec--------ceEEEEeEEECCccceeEEEECC------------eEEEEEeEEEECCc
Confidence 333333311111 689999999987 5678888754 12567777777643
No 29
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.24 E-value=0.00058 Score=54.98 Aligned_cols=92 Identities=22% Similarity=0.300 Sum_probs=56.6
Q ss_pred CeeecC-CcccEEEEeeEEec----------------CCceEEEcCCCeeEEEEeeEEeCC---------Ce-eEEEecc
Q 028660 12 DGIHVT-NTQNIRITSSTIGT----------------GDDCISIVSGSQNVQAQDITCGPG---------HG-ISIGSLG 64 (206)
Q Consensus 12 DGidi~-~s~nV~I~n~~i~~----------------~DD~i~iksgs~nI~I~nc~~~~~---------~g-i~igS~~ 64 (206)
-|+.+. .++||.|+|..|+. +.|++.+. +++||.|.+|+|.++ +| +.++.
T Consensus 37 ~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~-~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~-- 113 (200)
T PF00544_consen 37 GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID-NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKK-- 113 (200)
T ss_dssp SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE-STEEEEEES-EEEETTS-GGGSSSSSSEEEES--
T ss_pred ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE-ecccEEEeccEEeccccccccccCCceEEEEe--
Confidence 477776 77888888888887 45888887 477888888888654 34 55532
Q ss_pred CCCCCCcEEEEEEEceEEecCCceeEEEEecC---CCCeEEeEEEEeEEEeCC
Q 028660 65 KGNSNAYVSEVTVDGAKLSETANGVRIKTWQG---GSGYASNIIFQNIDMVNV 114 (206)
Q Consensus 65 ~gg~~~~i~nI~~~n~~~~~~~~gi~iks~~g---~~g~i~nI~~~ni~~~~~ 114 (206)
...+|+++++.+.+...+..+++.+. ..+ .+|+|-.-...+.
T Consensus 114 ------~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~--~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 114 ------GSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG--LRVTFHHNYFANT 158 (200)
T ss_dssp ------STEEEEEES-EEEEEEETCEESSCTTCGGGTT--EEEEEES-EEEEE
T ss_pred ------CCceEEEEchhccccccccccCCCCCccccCC--ceEEEEeEEECch
Confidence 26788888888877655555554321 112 5666666655543
No 30
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.0052 Score=52.06 Aligned_cols=96 Identities=17% Similarity=0.214 Sum_probs=65.1
Q ss_pred CCeeecCCcccEEEEeeEEecC------CceEEEcCCCeeEEEEeeEEeCC---------Ce-eEEEeccCCCCCCcEEE
Q 028660 11 TDGIHVTNTQNIRITSSTIGTG------DDCISIVSGSQNVQAQDITCGPG---------HG-ISIGSLGKGNSNAYVSE 74 (206)
Q Consensus 11 ~DGidi~~s~nV~I~n~~i~~~------DD~i~iksgs~nI~I~nc~~~~~---------~g-i~igS~~~gg~~~~i~n 74 (206)
.=|+-+...+||.|+|.+|.-- +|+|.|..+.+||.|.+|+|..+ +| +-|+ ..-..
T Consensus 116 g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik--------~~Any 187 (345)
T COG3866 116 GGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIK--------KDANY 187 (345)
T ss_pred eceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEec--------cCCcE
Confidence 3466777677888888888743 37888855578888888888652 23 4443 23667
Q ss_pred EEEEceEEecCCceeEEEEecCC--CCeEEeEEEEeEEEeCC
Q 028660 75 VTVDGAKLSETANGVRIKTWQGG--SGYASNIIFQNIDMVNV 114 (206)
Q Consensus 75 I~~~n~~~~~~~~gi~iks~~g~--~g~i~nI~~~ni~~~~~ 114 (206)
|+|+++.+.+...++-+.+.+.. .+.-.+|+|.+...++.
T Consensus 188 ITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 188 ITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred EEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 88888888887777777754321 13445677777777665
No 31
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.03 E-value=0.008 Score=49.14 Aligned_cols=96 Identities=25% Similarity=0.294 Sum_probs=64.4
Q ss_pred CCCCeeecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeC-CCeeEEEeccCCCCCCcEEEEEEEceEEecCCc
Q 028660 9 PNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGP-GHGISIGSLGKGNSNAYVSEVTVDGAKLSETAN 87 (206)
Q Consensus 9 ~n~DGidi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~-~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~ 87 (206)
...||+-+..+.+++|+++.|.....+|.+.. +++++|+++.+.. ..||.+.. ..+.++++.++.+...
T Consensus 33 ~~~~gi~~~~s~~~~I~~n~i~~~~~GI~~~~-s~~~~i~~n~i~~n~~Gi~l~~---------s~~~~I~~N~i~~n~~ 102 (236)
T PF05048_consen 33 NSRDGIYVENSDNNTISNNTISNNRYGIHLMG-SSNNTIENNTISNNGYGIYLMG---------SSNNTISNNTISNNGY 102 (236)
T ss_pred eCCCEEEEEEcCCeEEEeeEEECCCeEEEEEc-cCCCEEEeEEEEccCCCEEEEc---------CCCcEEECCEecCCCc
Confidence 46688888888888888888888877888864 6778888888875 46777743 2234777777777666
Q ss_pred eeEEEEecCCCCeEEeEEEEeEEEeCCCccEEEE
Q 028660 88 GVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIID 121 (206)
Q Consensus 88 gi~iks~~g~~g~i~nI~~~ni~~~~~~~~i~i~ 121 (206)
||.+.... +.++++-++.+...+|++.
T Consensus 103 GI~l~~s~-------~~~I~~N~i~~~~~GI~l~ 129 (236)
T PF05048_consen 103 GIYLYGSS-------NNTISNNTISNNGYGIYLS 129 (236)
T ss_pred eEEEeeCC-------ceEEECcEEeCCCEEEEEE
Confidence 77665431 2344444444445555554
No 32
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.017 Score=49.05 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=56.1
Q ss_pred CCCeeec-CCcccEEEEeeEEec---------CCceEEEcCCCeeEEEEeeEEeCC-CeeEEEeccCCCCCCcEEEEEEE
Q 028660 10 NTDGIHV-TNTQNIRITSSTIGT---------GDDCISIVSGSQNVQAQDITCGPG-HGISIGSLGKGNSNAYVSEVTVD 78 (206)
Q Consensus 10 n~DGidi-~~s~nV~I~n~~i~~---------~DD~i~iksgs~nI~I~nc~~~~~-~gi~igS~~~gg~~~~i~nI~~~ 78 (206)
+-|+|.+ ..++|+.|++|++.. +|..+.+|-++..|+|++|+|... .++-+|+.........-.+|++.
T Consensus 143 ~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~h 222 (345)
T COG3866 143 NYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIH 222 (345)
T ss_pred CCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEe
Confidence 3588998 678999999999986 477888888889999999999864 47888875432111234667777
Q ss_pred ceEEecC
Q 028660 79 GAKLSET 85 (206)
Q Consensus 79 n~~~~~~ 85 (206)
++.+.+.
T Consensus 223 hNyFkn~ 229 (345)
T COG3866 223 HNYFKNL 229 (345)
T ss_pred ccccccc
Confidence 7777664
No 33
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.76 E-value=0.0059 Score=49.14 Aligned_cols=78 Identities=27% Similarity=0.352 Sum_probs=54.1
Q ss_pred CCCCCCeeecCCcccEEEEeeEEecC---------CceEEEcCCCeeEEEEeeEEeCC-CeeEEEeccCCCCCCcEEEEE
Q 028660 7 DSPNTDGIHVTNTQNIRITSSTIGTG---------DDCISIVSGSQNVQAQDITCGPG-HGISIGSLGKGNSNAYVSEVT 76 (206)
Q Consensus 7 ~~~n~DGidi~~s~nV~I~n~~i~~~---------DD~i~iksgs~nI~I~nc~~~~~-~gi~igS~~~gg~~~~i~nI~ 76 (206)
.....|++.+..++||.|++|.+..+ |+.+.++.++.+|+|++|.|... .+..+|+......... .+|+
T Consensus 71 ~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT 149 (200)
T PF00544_consen 71 DSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVT 149 (200)
T ss_dssp EECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEE
T ss_pred cccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCC-ceEE
Confidence 34577999999989999999999966 66789988899999999999864 3666776322111223 8888
Q ss_pred EEceEEecC
Q 028660 77 VDGAKLSET 85 (206)
Q Consensus 77 ~~n~~~~~~ 85 (206)
|-+..+.+.
T Consensus 150 ~hhN~f~~~ 158 (200)
T PF00544_consen 150 FHHNYFANT 158 (200)
T ss_dssp EES-EEEEE
T ss_pred EEeEEECch
Confidence 888888653
No 34
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=95.83 E-value=0.48 Score=37.66 Aligned_cols=113 Identities=17% Similarity=0.281 Sum_probs=56.9
Q ss_pred EEEEeeEEeCCC--------eeEEEeccCCCCCCcEEEEEEEceEEecC-CceeEEEEecC----CCCeEEeEEEEeEEE
Q 028660 45 VQAQDITCGPGH--------GISIGSLGKGNSNAYVSEVTVDGAKLSET-ANGVRIKTWQG----GSGYASNIIFQNIDM 111 (206)
Q Consensus 45 I~I~nc~~~~~~--------gi~igS~~~gg~~~~i~nI~~~n~~~~~~-~~gi~iks~~g----~~g~i~nI~~~ni~~ 111 (206)
+.|+|.++.... ++.+ ...+++.++||++.+. ..++.+....+ ......++.+++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~---------~~~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--- 161 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRF---------NSSQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHVSGIFIDN--- 161 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEE---------TTEEEEEEEEEEEES-SS-SEEEECCEECEEECCEEEEEEEEES---
T ss_pred EEEEeeEEEcccccCCCCceEEEE---------EeCCeEEEEeEEEEccCccEEEEEccccCcEeecccceeeeecc---
Confidence 448888886531 2333 1388899999999874 45777773211 112233444444
Q ss_pred eCCCccEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCCceEEEEcCCCCCEEcEEEEe
Q 028660 112 VNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSKSYPCEAIVLEN 175 (206)
Q Consensus 112 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~~~~~i~ni~~~N 175 (206)
....+.+...+..... .. -...-++++++|..........+.+.+.....+++++|+|
T Consensus 162 --~~~~~~~~~~~~~~~~---~g-~~~~~~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i~~ 219 (225)
T PF12708_consen 162 --GSNNVIVNNCIFNGGD---NG-IILGNNNITISNNTFEGNCGNGINIEGGSNIIISNNTIEN 219 (225)
T ss_dssp --CEEEEEEECEEEESSS---CS-EECEEEEEEEECEEEESSSSESEEEEECSEEEEEEEEEES
T ss_pred --ceeEEEECCccccCCC---ce-eEeecceEEEEeEEECCccceeEEEECCeEEEEEeEEEEC
Confidence 1111111111100000 00 0001168889998888755578888766543444555544
No 35
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=94.10 E-value=0.37 Score=43.28 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=71.6
Q ss_pred CCCCCCeeecCCcccEEEEeeEEecCC-ceEEEcCCCeeEEEEeeEEeC-CC-eeEEEeccCCCCCCcEEEEEEEceEEe
Q 028660 7 DSPNTDGIHVTNTQNIRITSSTIGTGD-DCISIVSGSQNVQAQDITCGP-GH-GISIGSLGKGNSNAYVSEVTVDGAKLS 83 (206)
Q Consensus 7 ~~~n~DGidi~~s~nV~I~n~~i~~~D-D~i~iksgs~nI~I~nc~~~~-~~-gi~igS~~~gg~~~~i~nI~~~n~~~~ 83 (206)
.....+||+++.+.+++|++-+|+.++ |+|-+.+ ++|++|++.+|.. .. ||-. + -. .+-=.|+|-.+.
T Consensus 235 ~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhy--m-fs-----~~g~~i~~N~~~ 305 (455)
T TIGR03808 235 SGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYS--E-FA-----FEGAVIANNTVD 305 (455)
T ss_pred cCCccccEEEEccCCeEEECCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEE--E-Ee-----CCCcEEeccEEe
Confidence 356789999999999999999999999 9999987 7899999999984 23 4332 2 10 221244555566
Q ss_pred cCCceeEEEEe--cCCCCeEEeEEEEeEEEeC
Q 028660 84 ETANGVRIKTW--QGGSGYASNIIFQNIDMVN 113 (206)
Q Consensus 84 ~~~~gi~iks~--~g~~g~i~nI~~~ni~~~~ 113 (206)
+...|+.+--. .||.+.+..=.++|++-+.
T Consensus 306 g~~~G~av~nf~~ggr~~~~~gn~irn~~~~~ 337 (455)
T TIGR03808 306 GAAVGVSVCNFNEGGRLAVVQGNIIRNLIPKR 337 (455)
T ss_pred cCcceEEEEeecCCceEEEEecceeeccccCC
Confidence 76778888754 3455677777777777765
No 36
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=93.63 E-value=0.68 Score=41.67 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=24.5
Q ss_pred cccEEEEeeEEecC-------CceEEEcCCCeeEEEEeeEEeCC--CeeEE
Q 028660 19 TQNIRITSSTIGTG-------DDCISIVSGSQNVQAQDITCGPG--HGISI 60 (206)
Q Consensus 19 s~nV~I~n~~i~~~-------DD~i~iksgs~nI~I~nc~~~~~--~gi~i 60 (206)
.++|+|++++|+.+ |-+|.++ ++++++|++|++... .||.+
T Consensus 114 A~nVTIsGLtIdGsG~dl~~rdAgI~v~-~a~~v~Iedn~L~gsg~FGI~L 163 (455)
T TIGR03808 114 ADGIGLSGLTLDGGGIPLPQRRGLIHCQ-GGRDVRITDCEITGSGGNGIWL 163 (455)
T ss_pred CCCeEEEeeEEEeCCCcccCCCCEEEEc-cCCceEEEeeEEEcCCcceEEE
Confidence 45677777776653 3355553 466777777777543 45555
No 37
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=92.96 E-value=4.3 Score=33.07 Aligned_cols=114 Identities=16% Similarity=0.204 Sum_probs=61.5
Q ss_pred CCeeecCCcccEEEEeeEEec-CCceEEEcCCCeeEEEEeeEEeCCCe--eEEEeccCCCCCCcEEEEEEEceEEecCCc
Q 028660 11 TDGIHVTNTQNIRITSSTIGT-GDDCISIVSGSQNVQAQDITCGPGHG--ISIGSLGKGNSNAYVSEVTVDGAKLSETAN 87 (206)
Q Consensus 11 ~DGidi~~s~nV~I~n~~i~~-~DD~i~iksgs~nI~I~nc~~~~~~g--i~igS~~~gg~~~~i~nI~~~n~~~~~~~~ 87 (206)
.|||+..+ +.+|+|+.... +.|++++|+.+-.++|.+.-...+.- |-.- +. -.+.++|.++.+.
T Consensus 75 ~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~N--g~-------Gtv~I~nF~a~d~-- 141 (215)
T PF03211_consen 75 ADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQHN--GG-------GTVTIKNFYAEDF-- 141 (215)
T ss_dssp TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE---SS-------EEEEEEEEEEEEE--
T ss_pred cCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEec--Cc-------eeEEEEeEEEcCC--
Confidence 48888887 57788888874 78888888754455665555544322 3331 11 2355666555432
Q ss_pred eeEEEEecC---CCCeEEeEEEEeEEEeCCCccEEEEeEeCCCCCCCccCCceeEEeEEEEEe
Q 028660 88 GVRIKTWQG---GSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKN 147 (206)
Q Consensus 88 gi~iks~~g---~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~n 147 (206)
|-.+.|-.. ..+.=|+|.+++........-.-+..+|. +...|++++++.
T Consensus 142 GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~g----------D~ati~~~~~~~ 194 (215)
T PF03211_consen 142 GKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYG----------DTATISNSCIKG 194 (215)
T ss_dssp EEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGT----------TTEEEEEEEEEE
T ss_pred CEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCC----------CeEEEEEEEecC
Confidence 333333211 11344667777666554333444666664 346777777665
No 38
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=92.18 E-value=0.25 Score=29.40 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=32.8
Q ss_pred eeecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeC
Q 028660 13 GIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGP 54 (206)
Q Consensus 13 Gidi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~ 54 (206)
||.++.|.+.+|++..|....++|.+.. +++-+|+++++..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEEEc
Confidence 7888888888899999998877999875 5677777777653
No 39
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=91.29 E-value=6.1 Score=35.44 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=45.4
Q ss_pred cccEEEEeeEEe-cCCceEEEcCC-----------------------CeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEE
Q 028660 19 TQNIRITSSTIG-TGDDCISIVSG-----------------------SQNVQAQDITCGPGHGISIGSLGKGNSNAYVSE 74 (206)
Q Consensus 19 s~nV~I~n~~i~-~~DD~i~iksg-----------------------s~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~n 74 (206)
|-|..+++...- .-.|++.+.+. -.|=.|+|.....+.|+.+|-.+++ ++++|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~lGVG~~~DG~~---~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSLGVGIGMDGKG---GYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-SSESCEEECCS----EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccceeeeeecCCC---ceEee
Confidence 345666665543 34677877762 1566778888888888877766665 47888
Q ss_pred EEEEceEEecCCceeEEEEecCCCCeEEeEEEEeEEEeCC
Q 028660 75 VTVDGAKLSETANGVRIKTWQGGSGYASNIIFQNIDMVNV 114 (206)
Q Consensus 75 I~~~n~~~~~~~~gi~iks~~g~~g~i~nI~~~ni~~~~~ 114 (206)
|++++|. ..|+.+++.. =.|.||++-+.
T Consensus 340 i~~~d~~----g~G~~~~~~~--------~~ftNitvId~ 367 (549)
T PF09251_consen 340 ITVQDCA----GAGIFIRGTN--------KVFTNITVIDT 367 (549)
T ss_dssp EEEES-S----SESEEEECCS---------EEEEEEEES-
T ss_pred EEeeccc----CCceEEeecC--------CceeeeEEEec
Confidence 8777764 2466666542 25666666543
No 40
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=88.14 E-value=1.9 Score=36.74 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=11.7
Q ss_pred CeEEeEEEEeEEEeCCCccEEE
Q 028660 99 GYASNIIFQNIDMVNVKNPIII 120 (206)
Q Consensus 99 g~i~nI~~~ni~~~~~~~~i~i 120 (206)
-.|+|..+-||+..+.+..+++
T Consensus 243 q~vknfvvanitgs~crqlvhv 264 (464)
T PRK10123 243 QAVKNFVVANITGSDCRQLIHV 264 (464)
T ss_pred hhhhhEEEEeccCcChhheEEe
Confidence 4555666666665555444333
No 41
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=80.55 E-value=9.6 Score=33.78 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=31.0
Q ss_pred CcccEEEEeeEEecCC--ceEEEcCCCeeEEEEeeEEeCCCeeEEEe
Q 028660 18 NTQNIRITSSTIGTGD--DCISIVSGSQNVQAQDITCGPGHGISIGS 62 (206)
Q Consensus 18 ~s~nV~I~n~~i~~~D--D~i~iksgs~nI~I~nc~~~~~~gi~igS 62 (206)
+-.+|++.|+.|...| .++.+-+ ..++++-+|.|.+-+|.++.+
T Consensus 119 gM~~VtF~ni~F~~~~~~~g~~f~~-~t~~~~hgC~F~gf~g~cl~~ 164 (386)
T PF01696_consen 119 GMEGVTFVNIRFEGRDTFSGVVFHA-NTNTLFHGCSFFGFHGTCLES 164 (386)
T ss_pred eeeeeEEEEEEEecCCccceeEEEe-cceEEEEeeEEecCcceeEEE
Confidence 4467888999888655 2444443 568888888888877766644
No 42
>PLN02773 pectinesterase
Probab=77.85 E-value=46 Score=28.82 Aligned_cols=41 Identities=5% Similarity=0.011 Sum_probs=28.3
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeCC-CeeEE
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGPG-HGISI 60 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~~-~gi~i 60 (206)
+++..+|++|.|. .-++++......+.+.||.|.+. +-|..
T Consensus 102 ~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~ 148 (317)
T PLN02773 102 EDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYL 148 (317)
T ss_pred CCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEe
Confidence 5777777777764 34677777677888888888753 44554
No 43
>PLN02480 Probable pectinesterase
Probab=76.43 E-value=11 Score=32.98 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=27.4
Q ss_pred ccEEEEeeEEecC----------CceEEEcCCCeeEEEEeeEEeCC-CeeE
Q 028660 20 QNIRITSSTIGTG----------DDCISIVSGSQNVQAQDITCGPG-HGIS 59 (206)
Q Consensus 20 ~nV~I~n~~i~~~----------DD~i~iksgs~nI~I~nc~~~~~-~gi~ 59 (206)
.+++++|++|.|. +-+|++......+.+.||.|.+- +-|-
T Consensus 132 ~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy 182 (343)
T PLN02480 132 PHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLF 182 (343)
T ss_pred CCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeE
Confidence 4677777777775 34677766677888888888653 3443
No 44
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=76.40 E-value=11 Score=33.96 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=38.8
Q ss_pred CeeEEEEeeEEeCC--CeeEEEeccC--C-----CC--------CCcEEEEEEEceEEecCCceeEEEEecCCCCeEEeE
Q 028660 42 SQNVQAQDITCGPG--HGISIGSLGK--G-----NS--------NAYVSEVTVDGAKLSETANGVRIKTWQGGSGYASNI 104 (206)
Q Consensus 42 s~nI~I~nc~~~~~--~gi~igS~~~--g-----g~--------~~~i~nI~~~n~~~~~~~~gi~iks~~g~~g~i~nI 104 (206)
..|..++|...-.. +|+.+|+.+. . ++ ++-=.|=.++|+..+++ .|+.+.. .|++++|+||
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~~-DG~~~yvsni 340 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIGM-DGKGGYVSNI 340 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCEE-ECCS-EEEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeeee-cCCCceEeeE
Confidence 37899999987654 5899987521 1 11 12334556777777664 4444443 5778999999
Q ss_pred EEEeEEEeC
Q 028660 105 IFQNIDMVN 113 (206)
Q Consensus 105 ~~~ni~~~~ 113 (206)
+.+++.-++
T Consensus 341 ~~~d~~g~G 349 (549)
T PF09251_consen 341 TVQDCAGAG 349 (549)
T ss_dssp EEES-SSES
T ss_pred EeecccCCc
Confidence 988876554
No 45
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=74.53 E-value=30 Score=31.16 Aligned_cols=87 Identities=17% Similarity=0.288 Sum_probs=35.1
Q ss_pred ccEEEEeeEEecCC---ceEEEcCCCeeEEEEeeEEeCCCe-eEEEeccCCCCCCcEEEEEEEceEEecC-----CceeE
Q 028660 20 QNIRITSSTIGTGD---DCISIVSGSQNVQAQDITCGPGHG-ISIGSLGKGNSNAYVSEVTVDGAKLSET-----ANGVR 90 (206)
Q Consensus 20 ~nV~I~n~~i~~~D---D~i~iksgs~nI~I~nc~~~~~~g-i~igS~~~gg~~~~i~nI~~~n~~~~~~-----~~gi~ 90 (206)
.+.+|++..|...| .-|++|| .+-+|++.+|..+.| |.+-. | -.+ ++++-.+++. ..|+|
T Consensus 199 s~t~Ve~NlFe~cdGE~EIISvKS--~~N~ir~Ntf~es~G~ltlRH----G----n~n-~V~gN~FiGng~~~~tGGIR 267 (425)
T PF14592_consen 199 SNTTVENNLFERCDGEVEIISVKS--SDNTIRNNTFRESQGSLTLRH----G----NRN-TVEGNVFIGNGVKEGTGGIR 267 (425)
T ss_dssp ---EEES-EEEEE-SSSEEEEEES--BT-EEES-EEES-SSEEEEEE---------SS--EEES-EEEE-SSSS-B--EE
T ss_pred cceeeecchhhhcCCceeEEEeec--CCceEeccEEEeccceEEEec----C----CCc-eEeccEEecCCCcCCCCceE
Confidence 35666666666544 3566664 334555555555443 54421 1 111 2233333322 12555
Q ss_pred EEEecCCCCeEEeEEEEeEEEeCCCccEEE
Q 028660 91 IKTWQGGSGYASNIIFQNIDMVNVKNPIII 120 (206)
Q Consensus 91 iks~~g~~g~i~nI~~~ni~~~~~~~~i~i 120 (206)
|-- ..-.|.|=.|++++-...+.++.+
T Consensus 268 Ii~---~~H~I~nNY~~gl~g~~~~~~~~v 294 (425)
T PF14592_consen 268 IIG---EGHTIYNNYFEGLTGTRFRGALAV 294 (425)
T ss_dssp E-S---BS-EEES-EEEESSB-TTTTSEE-
T ss_pred Eec---CCcEEEcceeeccccceeecceee
Confidence 532 235666777777766666666653
No 46
>PLN02773 pectinesterase
Probab=74.41 E-value=57 Score=28.23 Aligned_cols=82 Identities=9% Similarity=0.052 Sum_probs=51.0
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCCceeEEEEecCCC
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETANGVRIKTWQGGS 98 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~gi~iks~~g~~ 98 (206)
...+.+.||.|....|.+-.+. ..-.++||++.+.--+=+|+ -...|++|++.....| .|... ++.
T Consensus 129 gDr~~f~~c~~~G~QDTL~~~~--gr~yf~~c~IeG~VDFIFG~----------g~a~Fe~c~i~s~~~g-~ITA~-~r~ 194 (317)
T PLN02773 129 ADRCAFYNCRFLGWQDTLYLHY--GKQYLRDCYIEGSVDFIFGN----------STALLEHCHIHCKSAG-FITAQ-SRK 194 (317)
T ss_pred CccEEEEccEeecccceeEeCC--CCEEEEeeEEeecccEEeec----------cEEEEEeeEEEEccCc-EEECC-CCC
Confidence 4578899999998888888764 35788888888766666653 1357777777654333 23221 111
Q ss_pred --CeEEeEEEEeEEEeCC
Q 028660 99 --GYASNIIFQNIDMVNV 114 (206)
Q Consensus 99 --g~i~nI~~~ni~~~~~ 114 (206)
..-....|.|+++...
T Consensus 195 ~~~~~~GfvF~~c~it~~ 212 (317)
T PLN02773 195 SSQESTGYVFLRCVITGN 212 (317)
T ss_pred CCCCCceEEEEccEEecC
Confidence 1112456777777754
No 47
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=69.93 E-value=23 Score=31.49 Aligned_cols=62 Identities=15% Similarity=0.074 Sum_probs=41.6
Q ss_pred eeecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCC-eeEEEeccCCCCCCcEEEEEEEceEEecC
Q 028660 13 GIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGH-GISIGSLGKGNSNAYVSEVTVDGAKLSET 85 (206)
Q Consensus 13 Gidi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~-gi~igS~~~gg~~~~i~nI~~~n~~~~~~ 85 (206)
|+-+.+..++++++|.|.+- -+.+++.. ....|+.|+|.+.. |+.-. + -..+.++.|.+...
T Consensus 138 g~~f~~~t~~~~hgC~F~gf-~g~cl~~~-~~~~VrGC~F~~C~~gi~~~----~-----~~~lsVk~C~FekC 200 (386)
T PF01696_consen 138 GVVFHANTNTLFHGCSFFGF-HGTCLESW-AGGEVRGCTFYGCWKGIVSR----G-----KSKLSVKKCVFEKC 200 (386)
T ss_pred eeEEEecceEEEEeeEEecC-cceeEEEc-CCcEEeeeEEEEEEEEeecC----C-----cceEEeeheeeehe
Confidence 56667778999999999975 34566653 47899999997653 55432 1 45555566666543
No 48
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=67.09 E-value=98 Score=27.95 Aligned_cols=122 Identities=13% Similarity=0.162 Sum_probs=68.8
Q ss_pred ccEEEEeeEEecC---------CceEEEcCCCeeEEEEeeEEeC-CCeeEEEeccC-C-CCCCcEEEEEEEceEEecCCc
Q 028660 20 QNIRITSSTIGTG---------DDCISIVSGSQNVQAQDITCGP-GHGISIGSLGK-G-NSNAYVSEVTVDGAKLSETAN 87 (206)
Q Consensus 20 ~nV~I~n~~i~~~---------DD~i~iksgs~nI~I~nc~~~~-~~gi~igS~~~-g-g~~~~i~nI~~~n~~~~~~~~ 87 (206)
+++..+|++|.|. .-+++|......+.+.+|.|.+ .+-|-.++... . +.......-+|+||.|.+.-.
T Consensus 206 d~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~VD 285 (422)
T PRK10531 206 NGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGDVD 285 (422)
T ss_pred CCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeeccc
Confidence 5777777777775 2478887777889999999986 45566643211 0 000123467888999977522
Q ss_pred eeEEEEecCCCCeEEeEEEEeEEEeCCCc----cEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCCceEEE
Q 028660 88 GVRIKTWQGGSGYASNIIFQNIDMVNVKN----PIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKL 160 (206)
Q Consensus 88 gi~iks~~g~~g~i~nI~~~ni~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i 160 (206)
-|. |. | ...||++++..... .-+|... .. ....-.++.|.|-++++......+|
T Consensus 286 FIF-----G~-g---~AvFenC~I~s~~~~~~~~g~ITA~-~t---------~~~~~~GfvF~nCrit~~g~~~~yL 343 (422)
T PRK10531 286 FVF-----GR-G---AVVFDNTEFRVVNSRTQQEAYVFAP-AT---------LPNIYYGFLAINSRFNASGDGVAQL 343 (422)
T ss_pred EEc-----cC-c---eEEEEcCEEEEecCCCCCceEEEec-CC---------CCCCCCEEEEECCEEecCCCCCeec
Confidence 211 11 2 34688888876432 1233321 00 1112246778888777754223444
No 49
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=67.04 E-value=8.8 Score=18.83 Aligned_cols=10 Identities=30% Similarity=0.265 Sum_probs=5.0
Q ss_pred eEEEEeeEEe
Q 028660 44 NVQAQDITCG 53 (206)
Q Consensus 44 nI~I~nc~~~ 53 (206)
+++|++|++.
T Consensus 3 ~~~i~~n~i~ 12 (26)
T smart00710 3 NVTIENNTIR 12 (26)
T ss_pred CEEEECCEEE
Confidence 4455555554
No 50
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=66.96 E-value=30 Score=29.70 Aligned_cols=63 Identities=24% Similarity=0.320 Sum_probs=36.4
Q ss_pred cEEEEeeEEec-CCceE----EEcCCCeeEEEEeeEE-----eCC---CeeEEEeccCCC-----CCCcEEEEEEEceEE
Q 028660 21 NIRITSSTIGT-GDDCI----SIVSGSQNVQAQDITC-----GPG---HGISIGSLGKGN-----SNAYVSEVTVDGAKL 82 (206)
Q Consensus 21 nV~I~n~~i~~-~DD~i----~iksgs~nI~I~nc~~-----~~~---~gi~igS~~~gg-----~~~~i~nI~~~n~~~ 82 (206)
.++|.||.|+. +.|+| ++. -+||+|++-.+ .++ +||.||-.++.- +.+.++|..+.|++-
T Consensus 178 garitn~rfs~lqgdaiewnvain--dr~ilisdhvie~inctngkinwgigiglagstydn~ype~q~vknfvvanitg 255 (464)
T PRK10123 178 GANITNCKFSDLQGDAIEWNVAIN--DRDILISDHVIERINCTNGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITG 255 (464)
T ss_pred cceeeccccccccCceEEEEEEec--ccceeeehheheeecccCCcccceeeeeeccccccCCCchhhhhhhEEEEeccC
Confidence 35566666663 23443 332 46777766554 333 578887655432 346677777777765
Q ss_pred ecC
Q 028660 83 SET 85 (206)
Q Consensus 83 ~~~ 85 (206)
.+.
T Consensus 256 s~c 258 (464)
T PRK10123 256 SDC 258 (464)
T ss_pred cCh
Confidence 544
No 51
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=65.74 E-value=33 Score=30.89 Aligned_cols=102 Identities=18% Similarity=0.281 Sum_probs=56.9
Q ss_pred eecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCC-----CeeEEEeccCCCCCCcEEEEEEEceEEecCCce
Q 028660 14 IHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPG-----HGISIGSLGKGNSNAYVSEVTVDGAKLSETANG 88 (206)
Q Consensus 14 idi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~-----~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~g 88 (206)
|.+-+| .-+|++-+|......+++..|..++.-.|..+..+ .||+|=-+ +..|.|=+|++++=.....+
T Consensus 218 ISvKS~-~N~ir~Ntf~es~G~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~~-----~H~I~nNY~~gl~g~~~~~~ 291 (425)
T PF14592_consen 218 ISVKSS-DNTIRNNTFRESQGSLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIGE-----GHTIYNNYFEGLTGTRFRGA 291 (425)
T ss_dssp EEEESB-T-EEES-EEES-SSEEEEEE-SS-EEES-EEEE-SSSS-B--EEE-SB-----S-EEES-EEEESSB-TTTTS
T ss_pred EEeecC-CceEeccEEEeccceEEEecCCCceEeccEEecCCCcCCCCceEEecC-----CcEEEcceeeccccceeecc
Confidence 334455 55677777777889999999886665555555443 37998222 35688888888876555556
Q ss_pred eEE-EEec----CCCCeEEeEEEEeEEEeCCCccEEEE
Q 028660 89 VRI-KTWQ----GGSGYASNIIFQNIDMVNVKNPIIID 121 (206)
Q Consensus 89 i~i-ks~~----g~~g~i~nI~~~ni~~~~~~~~i~i~ 121 (206)
+.+ ...+ .+...+.|+++.+-++-+...+|.+-
T Consensus 292 ~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~~i~~g 329 (425)
T PF14592_consen 292 LAVMNGVPNSPLNRYDQVKNVLIANNTFINCKSPIHFG 329 (425)
T ss_dssp EE-EEE--BSTTSTT---BSEEEES-EEES-SEEEESS
T ss_pred eeeccCCCCCCcccccccceeEEecceEEccCCceEEc
Confidence 663 2222 25678999999999999988776654
No 52
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=64.18 E-value=38 Score=31.17 Aligned_cols=41 Identities=5% Similarity=-0.016 Sum_probs=26.6
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeCC-CeeEE
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGPG-HGISI 60 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~~-~gi~i 60 (206)
.+...+|+.|.|. .-++++........+.||.|.+- +-|..
T Consensus 270 ~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~ 316 (497)
T PLN02698 270 DGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYA 316 (497)
T ss_pred CCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchhee
Confidence 3555666666653 35777777778888888888753 34544
No 53
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=63.58 E-value=1.1e+02 Score=27.08 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=12.5
Q ss_pred CCCeeecCCcccEEEEeeEEe
Q 028660 10 NTDGIHVTNTQNIRITSSTIG 30 (206)
Q Consensus 10 n~DGidi~~s~nV~I~n~~i~ 30 (206)
|+=||-+..+.++.|+..+|.
T Consensus 119 n~~Gi~l~~s~d~~i~~n~i~ 139 (408)
T COG3420 119 NSFGIYLHGSADVRIEGNTIQ 139 (408)
T ss_pred cceEEEEeccCceEEEeeEEe
Confidence 455566666666666666655
No 54
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=58.66 E-value=1.1e+02 Score=25.56 Aligned_cols=98 Identities=17% Similarity=0.120 Sum_probs=62.0
Q ss_pred ecCCcccEEEEeeEEecCCc----eEEEcCCCeeEEEEeeEEeC--CCeeEEEecc-CCCCCCcEEEEEEEceEEecCCc
Q 028660 15 HVTNTQNIRITSSTIGTGDD----CISIVSGSQNVQAQDITCGP--GHGISIGSLG-KGNSNAYVSEVTVDGAKLSETAN 87 (206)
Q Consensus 15 di~~s~nV~I~n~~i~~~DD----~i~iksgs~nI~I~nc~~~~--~~gi~igS~~-~gg~~~~i~nI~~~n~~~~~~~~ 87 (206)
-+....+.+|+..+|.+.+. +|.+.+ .+.+|+||+|.. ..|+.+-... .. .+.++.++.-.++....
T Consensus 92 tI~~~~~~~i~GvtItN~n~~~g~Gi~Ies--s~~tI~Nntf~~~~~~GI~v~g~~~~~----~i~~~vI~GN~~~~~~~ 165 (246)
T PF07602_consen 92 TIILANNATISGVTITNPNIARGTGIWIES--SSPTIANNTFTNNGREGIFVTGTSANP----GINGNVISGNSIYFNKT 165 (246)
T ss_pred EEEecCCCEEEEEEEEcCCCCcceEEEEec--CCcEEEeeEEECCccccEEEEeeecCC----cccceEeecceEEecCc
Confidence 33445677888888888743 566664 489999999986 3587663221 22 48888899988888778
Q ss_pred eeEEEEecCCCCeEEeEEEEeEEEeCCCccEEEEe
Q 028660 88 GVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIIDQ 122 (206)
Q Consensus 88 gi~iks~~g~~g~i~nI~~~ni~~~~~~~~i~i~~ 122 (206)
|+.+..... + ++| .++|=.+++...+|.+..
T Consensus 166 Gi~i~~~~~--~-~~n-~I~NN~I~~N~~Gi~~~~ 196 (246)
T PF07602_consen 166 GISISDNAA--P-VEN-KIENNIIENNNIGIVAIG 196 (246)
T ss_pred CeEEEcccC--C-ccc-eeeccEEEeCCcCeEeec
Confidence 888875422 2 222 224444444444666543
No 55
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=54.87 E-value=67 Score=26.76 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=53.8
Q ss_pred CeeCCCCCCCCCeeecCCcccEEEEeeEEec-CCceEEEc-----CCCeeEEEEeeEEeC-CCeeEEEeccCCCCCCcEE
Q 028660 1 MVTAPGDSPNTDGIHVTNTQNIRITSSTIGT-GDDCISIV-----SGSQNVQAQDITCGP-GHGISIGSLGKGNSNAYVS 73 (206)
Q Consensus 1 ~~~~~~~~~n~DGidi~~s~nV~I~n~~i~~-~DD~i~ik-----sgs~nI~I~nc~~~~-~~gi~igS~~~gg~~~~i~ 73 (206)
||++|.. .-.=|+.+.++ +.+|+||+|.. ..++|.+. ....++.|++..++. ..||++-....+ ++
T Consensus 105 tItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~~-----~~ 177 (246)
T PF07602_consen 105 TITNPNI-ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDNAAP-----VE 177 (246)
T ss_pred EEEcCCC-CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeEEEcccCC-----cc
Confidence 3566632 12247888887 99999999997 35666553 235677888888875 468888432221 23
Q ss_pred EEEEEceEEecCCceeEEE
Q 028660 74 EVTVDGAKLSETANGVRIK 92 (206)
Q Consensus 74 nI~~~n~~~~~~~~gi~ik 92 (206)
+ .++|-.+++...||.+.
T Consensus 178 n-~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 178 N-KIENNIIENNNIGIVAI 195 (246)
T ss_pred c-eeeccEEEeCCcCeEee
Confidence 2 34666777666687765
No 56
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=51.49 E-value=28 Score=32.51 Aligned_cols=41 Identities=0% Similarity=-0.020 Sum_probs=27.8
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeC-CCeeEE
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGP-GHGISI 60 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~-~~gi~i 60 (206)
++...+|..|.|. .-++++...+....+.||.|.+ .+-|..
T Consensus 323 ~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~ 369 (548)
T PLN02301 323 DGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYA 369 (548)
T ss_pred CceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeecccccee
Confidence 4566666666653 4578887777888888888875 344554
No 57
>PLN02197 pectinesterase
Probab=51.19 E-value=32 Score=32.37 Aligned_cols=41 Identities=5% Similarity=0.056 Sum_probs=28.5
Q ss_pred ccEEEEeeEEec-----CCceEEEcCCCeeEEEEeeEEeC-CCeeEE
Q 028660 20 QNIRITSSTIGT-----GDDCISIVSGSQNVQAQDITCGP-GHGISI 60 (206)
Q Consensus 20 ~nV~I~n~~i~~-----~DD~i~iksgs~nI~I~nc~~~~-~~gi~i 60 (206)
.+...+|+.|.| ++.++++...+....+.||.|.+ .+-|..
T Consensus 364 ~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~ 410 (588)
T PLN02197 364 EGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYV 410 (588)
T ss_pred CcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEe
Confidence 466667777776 34678888778888888888875 334544
No 58
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=51.14 E-value=1.4e+02 Score=27.75 Aligned_cols=34 Identities=0% Similarity=-0.142 Sum_probs=20.5
Q ss_pred cEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeC
Q 028660 21 NIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGP 54 (206)
Q Consensus 21 nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~ 54 (206)
+...+|..|.|. ..++|+...+....+.+|.|.+
T Consensus 285 gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~G 323 (509)
T PLN02488 285 GFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEG 323 (509)
T ss_pred CeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeec
Confidence 444455555542 3467776666777777777765
No 59
>PLN02480 Probable pectinesterase
Probab=49.79 E-value=1.8e+02 Score=25.49 Aligned_cols=55 Identities=2% Similarity=-0.041 Sum_probs=37.3
Q ss_pred CcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEec
Q 028660 18 NTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSE 84 (206)
Q Consensus 18 ~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~ 84 (206)
....+.++||.|....|-+-... ..-.++||++.+.--+=+|. -...|++|++..
T Consensus 163 ~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~----------g~a~fe~C~i~s 217 (343)
T PLN02480 163 GADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR----------GRSIFHNCEIFV 217 (343)
T ss_pred cCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc----------eeEEEEccEEEE
Confidence 36789999999998878776553 34677788877655555542 244666666654
No 60
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=48.66 E-value=60 Score=30.44 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=28.3
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeCC-CeeEE
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGPG-HGISI 60 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~~-~gi~i 60 (206)
+++..+|++|.|. .-+||+........+.+|.|.+- +-|..
T Consensus 340 ~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~ 386 (566)
T PLN02713 340 QNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYT 386 (566)
T ss_pred CCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEE
Confidence 5677777777763 35777777777888888888753 34554
No 61
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=48.14 E-value=2.4e+02 Score=26.45 Aligned_cols=41 Identities=10% Similarity=0.013 Sum_probs=30.5
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeC-CCeeEE
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGP-GHGISI 60 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~-~~gi~i 60 (206)
.++..+|.+|.|. ..+|++...+..+.+.||.|.+ .+-+-.
T Consensus 330 ~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~ 376 (553)
T PLN02708 330 DGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYA 376 (553)
T ss_pred CCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeecccccee
Confidence 5777788888764 3588888888899999999976 334444
No 62
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=46.30 E-value=34 Score=31.75 Aligned_cols=41 Identities=7% Similarity=0.038 Sum_probs=28.2
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeCC-CeeEE
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGPG-HGISI 60 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~~-~gi~i 60 (206)
.+...+|..|.|. .-+||+........+.+|.|.+- +-|..
T Consensus 305 ~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~ 351 (530)
T PLN02933 305 KGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYV 351 (530)
T ss_pred CCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEeccccccc
Confidence 4666677777754 35788887778888888888753 34443
No 63
>PLN02682 pectinesterase family protein
Probab=46.11 E-value=75 Score=28.14 Aligned_cols=40 Identities=3% Similarity=-0.053 Sum_probs=27.3
Q ss_pred ccEEEEeeEEecCC----------ceEEEcCCCeeEEEEeeEEeCC-CeeE
Q 028660 20 QNIRITSSTIGTGD----------DCISIVSGSQNVQAQDITCGPG-HGIS 59 (206)
Q Consensus 20 ~nV~I~n~~i~~~D----------D~i~iksgs~nI~I~nc~~~~~-~gi~ 59 (206)
.++..+|.+|.|.- .++++........+.||.|.+- +-|.
T Consensus 163 ~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy 213 (369)
T PLN02682 163 PYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLY 213 (369)
T ss_pred CCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceE
Confidence 36777777777632 3777777778888888888763 3444
No 64
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=45.68 E-value=31 Score=32.47 Aligned_cols=35 Identities=9% Similarity=0.018 Sum_probs=23.5
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeC
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGP 54 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~ 54 (206)
++...+|..|.|. +.++++...+....+.||.|.+
T Consensus 362 ~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g 401 (587)
T PLN02313 362 ERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFA 401 (587)
T ss_pred CCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEec
Confidence 4555666666653 3577777777777888888765
No 65
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=45.21 E-value=29 Score=32.35 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=25.5
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeCC-CeeEE
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGPG-HGISI 60 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~~-~gi~i 60 (206)
.++..+|..|.|. ..++++......+.+.+|.|.+- +-|..
T Consensus 317 ~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~ 363 (541)
T PLN02416 317 EGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYV 363 (541)
T ss_pred CCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhcc
Confidence 4566666666653 45677776677777788877653 33443
No 66
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=45.10 E-value=55 Score=27.20 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=34.4
Q ss_pred eEEeCCCe--eEEEeccCCCCCCcEEEEEEEceEEecCCceeEEEEecCCCCeEEeEEE
Q 028660 50 ITCGPGHG--ISIGSLGKGNSNAYVSEVTVDGAKLSETANGVRIKTWQGGSGYASNIIF 106 (206)
Q Consensus 50 c~~~~~~g--i~igS~~~gg~~~~i~nI~~~n~~~~~~~~gi~iks~~g~~g~i~nI~~ 106 (206)
|++|+..| |+-||... +|+-+.|.+=+..-+.+-+.+..+. |.||++.|
T Consensus 94 c~~ws~~geliatgsndk-----~ik~l~fn~dt~~~~g~dle~nmhd---gtirdl~f 144 (350)
T KOG0641|consen 94 CTAWSPCGELIATGSNDK-----TIKVLPFNADTCNATGHDLEFNMHD---GTIRDLAF 144 (350)
T ss_pred EEEecCccCeEEecCCCc-----eEEEEecccccccccCcceeeeecC---CceeeeEE
Confidence 67787555 77777543 5888888887776666777777764 56666655
No 67
>PLN02432 putative pectinesterase
Probab=44.83 E-value=80 Score=27.02 Aligned_cols=34 Identities=6% Similarity=-0.063 Sum_probs=16.2
Q ss_pred cEEEEeeEEecC----CceEEEcCCCeeEEEEeeEEeC
Q 028660 21 NIRITSSTIGTG----DDCISIVSGSQNVQAQDITCGP 54 (206)
Q Consensus 21 nV~I~n~~i~~~----DD~i~iksgs~nI~I~nc~~~~ 54 (206)
++..+|++|.|. .-++++........+.||.|.+
T Consensus 95 ~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G 132 (293)
T PLN02432 95 DFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILS 132 (293)
T ss_pred CeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEec
Confidence 344444444432 2345554444555555555554
No 68
>PLN02497 probable pectinesterase
Probab=43.40 E-value=88 Score=27.28 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=21.8
Q ss_pred ccEEEEeeEEecCC------------ceEEEcCCCeeEEEEeeEEeC
Q 028660 20 QNIRITSSTIGTGD------------DCISIVSGSQNVQAQDITCGP 54 (206)
Q Consensus 20 ~nV~I~n~~i~~~D------------D~i~iksgs~nI~I~nc~~~~ 54 (206)
.++..+|.+|.|.- .++++........+.||.|.+
T Consensus 115 ~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G 161 (331)
T PLN02497 115 DNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAG 161 (331)
T ss_pred CCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEec
Confidence 35555566665531 266666666777777777765
No 69
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=42.62 E-value=41 Score=31.28 Aligned_cols=41 Identities=5% Similarity=-0.023 Sum_probs=26.5
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeCC-CeeEE
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGPG-HGISI 60 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~~-~gi~i 60 (206)
++...+|..|.|. .-++++......+.+.||.|.+- +-|..
T Consensus 319 ~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~ 365 (537)
T PLN02506 319 RGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYA 365 (537)
T ss_pred CCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeccccccee
Confidence 4556666666653 35777777777888888887653 34443
No 70
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=41.91 E-value=24 Score=30.16 Aligned_cols=56 Identities=2% Similarity=0.005 Sum_probs=28.1
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeC-CCeeEEEeccCCCCCCcEEEEEEEceEEecC
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGP-GHGISIGSLGKGNSNAYVSEVTVDGAKLSET 85 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~-~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~ 85 (206)
+++..+|.+|.|. .-+++|......+.+.||.|.+ .+-|...+ ...+|+||.+.+.
T Consensus 87 ~~f~~~nit~~Nt~g~~~~qAvAl~~~~d~~~f~~c~~~g~QDTL~~~~----------~r~y~~~c~IeG~ 148 (298)
T PF01095_consen 87 DDFTAENITFENTAGPSGGQAVALRVSGDRAAFYNCRFLGYQDTLYANG----------GRQYFKNCYIEGN 148 (298)
T ss_dssp TT-EEEEEEEEEHCSGSG----SEEET-TSEEEEEEEEE-STT-EEE-S----------SEEEEES-EEEES
T ss_pred cceeeeeeEEecCCCCcccceeeeeecCCcEEEEEeEEccccceeeecc----------ceeEEEeeEEEec
Confidence 4666666666652 2245555545677888888875 34455421 1456677777654
No 71
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=40.86 E-value=38 Score=31.53 Aligned_cols=35 Identities=9% Similarity=-0.019 Sum_probs=22.4
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeC
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGP 54 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~ 54 (206)
.+...+|++|.|. ..++++........+.||.|.+
T Consensus 312 ~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G 351 (539)
T PLN02995 312 LHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEG 351 (539)
T ss_pred CCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEec
Confidence 3455555555543 3567777767777777777765
No 72
>PLN02314 pectinesterase
Probab=40.56 E-value=48 Score=31.19 Aligned_cols=41 Identities=7% Similarity=-0.022 Sum_probs=27.5
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeCC-CeeEE
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGPG-HGISI 60 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~~-~gi~i 60 (206)
++...+|..|.|. .-++++..+.....+.||.|.+- +-|..
T Consensus 365 ~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~ 411 (586)
T PLN02314 365 KGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYA 411 (586)
T ss_pred CCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchhee
Confidence 4566666666654 35788877778888888888753 34444
No 73
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=40.45 E-value=2.6e+02 Score=26.93 Aligned_cols=35 Identities=6% Similarity=-0.033 Sum_probs=27.0
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeC
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGP 54 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~ 54 (206)
.+...+|+.|.|. ..++++........+.||.|.+
T Consensus 337 ~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G 376 (670)
T PLN02217 337 DHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDG 376 (670)
T ss_pred CCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeee
Confidence 4666777777764 4688988888899999999875
No 74
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=40.26 E-value=51 Score=30.81 Aligned_cols=18 Identities=0% Similarity=0.097 Sum_probs=10.6
Q ss_pred EEEEEEceEEecCCceeE
Q 028660 73 SEVTVDGAKLSETANGVR 90 (206)
Q Consensus 73 ~nI~~~n~~~~~~~~gi~ 90 (206)
..+.|.||.+++...=|.
T Consensus 358 D~~~f~~c~~~G~QDTLy 375 (553)
T PLN02708 358 DLSVIENCEFLGNQDTLY 375 (553)
T ss_pred CcEEEEeeeeeeccccce
Confidence 456677777776543333
No 75
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=39.05 E-value=3.3e+02 Score=25.46 Aligned_cols=83 Identities=11% Similarity=0.050 Sum_probs=50.5
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCC----ceeEEEEe
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETA----NGVRIKTW 94 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~----~gi~iks~ 94 (206)
.....+.+|.|....|-+-..++ .-.+++|++.+.--+=+|. -...|+||++.... ..-.|..
T Consensus 339 ~Dr~~f~~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----------a~avf~~C~i~~~~~~~~~~~~iTA- 405 (539)
T PLN02995 339 SDLSIFYKCSIEGYQDTLMVHSQ--RQFYRECYIYGTVDFIFGN----------AAAVFQNCIILPRRPLKGQANVITA- 405 (539)
T ss_pred CCceeEEcceEecccchhccCCC--ceEEEeeEEeeccceEecc----------cceEEeccEEEEecCCCCCcceEec-
Confidence 46788999999987787776643 3488888888765666653 23566677765421 1122322
Q ss_pred cCCC--CeEEeEEEEeEEEeCC
Q 028660 95 QGGS--GYASNIIFQNIDMVNV 114 (206)
Q Consensus 95 ~g~~--g~i~nI~~~ni~~~~~ 114 (206)
.+|. ..-..+.|.|+++...
T Consensus 406 ~~r~~~~~~~G~vf~~c~i~~~ 427 (539)
T PLN02995 406 QGRADPFQNTGISIHNSRILPA 427 (539)
T ss_pred CCCCCCCCCceEEEEeeEEecC
Confidence 2221 2234667888877763
No 76
>PLN02176 putative pectinesterase
Probab=38.65 E-value=1.3e+02 Score=26.40 Aligned_cols=20 Identities=5% Similarity=-0.059 Sum_probs=12.4
Q ss_pred eEEEcCCCeeEEEEeeEEeC
Q 028660 35 CISIVSGSQNVQAQDITCGP 54 (206)
Q Consensus 35 ~i~iksgs~nI~I~nc~~~~ 54 (206)
++++........+.||.|.+
T Consensus 148 AVAl~v~gDr~~f~~C~f~G 167 (340)
T PLN02176 148 AVAARMLGDKYAIIDSSFDG 167 (340)
T ss_pred eEEEEecCccEEEEccEEec
Confidence 55555555666666666654
No 77
>PLN02634 probable pectinesterase
Probab=38.22 E-value=2.8e+02 Score=24.47 Aligned_cols=40 Identities=0% Similarity=-0.114 Sum_probs=28.4
Q ss_pred ccEEEEeeEEecC----------CceEEEcCCCeeEEEEeeEEeCC-CeeE
Q 028660 20 QNIRITSSTIGTG----------DDCISIVSGSQNVQAQDITCGPG-HGIS 59 (206)
Q Consensus 20 ~nV~I~n~~i~~~----------DD~i~iksgs~nI~I~nc~~~~~-~gi~ 59 (206)
.+...+|++|.|. .-++++........+.+|.|.+. +-|.
T Consensus 149 ~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~ 199 (359)
T PLN02634 149 NYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLC 199 (359)
T ss_pred CCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceee
Confidence 4566666666654 25788887788999999999863 4454
No 78
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=38.18 E-value=22 Score=29.65 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=11.1
Q ss_pred ceeEEeEEEEEeEEEEcC
Q 028660 136 SAVHIKNVVFKNIRGTSA 153 (206)
Q Consensus 136 ~~~~i~nIt~~ni~~~~~ 153 (206)
..+.|+||.|+|+.+...
T Consensus 210 ~gatI~nL~l~nv~I~~~ 227 (250)
T PF05342_consen 210 NGATIKNLNLKNVNINGP 227 (250)
T ss_pred cCCEEEcceeEEeeeecc
Confidence 345666666666666654
No 79
>PLN02916 pectinesterase family protein
Probab=37.70 E-value=70 Score=29.53 Aligned_cols=40 Identities=5% Similarity=-0.019 Sum_probs=23.8
Q ss_pred cEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeC-CCeeEE
Q 028660 21 NIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGP-GHGISI 60 (206)
Q Consensus 21 nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~-~~gi~i 60 (206)
+...+|..|.|. .-++++........+.+|.|.+ .+-|..
T Consensus 278 ~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~ 323 (502)
T PLN02916 278 GFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFV 323 (502)
T ss_pred CEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEe
Confidence 455555555543 3467776666777777777765 334444
No 80
>PLN02916 pectinesterase family protein
Probab=36.43 E-value=3.5e+02 Score=25.05 Aligned_cols=83 Identities=12% Similarity=0.033 Sum_probs=53.7
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCC----ceeEEEEe
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETA----NGVRIKTW 94 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~----~gi~iks~ 94 (206)
+....+.+|.|....|-+-..++ .-.+++|++.+.--+=+|. -...|+||+++... ..-.|...
T Consensus 304 ~D~a~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----------a~avFq~C~I~~~~~~~~~~g~ITAq 371 (502)
T PLN02916 304 SDLSVFYRCSFKGYQDTLFVHSL--RQFYRDCHIYGTIDFIFGD----------AAVVFQNCDIFVRRPMDHQGNMITAQ 371 (502)
T ss_pred CCcEEEEeeeEeccCceeEeCCC--CEEEEecEEecccceeccC----------ceEEEecCEEEEecCCCCCcceEEec
Confidence 46788999999988888887753 3588999988766666653 24567777775421 12233322
Q ss_pred cCC--CCeEEeEEEEeEEEeCC
Q 028660 95 QGG--SGYASNIIFQNIDMVNV 114 (206)
Q Consensus 95 ~g~--~g~i~nI~~~ni~~~~~ 114 (206)
+| ...-..+.|.|+++...
T Consensus 372 -~r~~~~~~tGfvf~~C~it~~ 392 (502)
T PLN02916 372 -GRDDPHENTGISIQHSRVRAS 392 (502)
T ss_pred -CCCCCCCCcEEEEEeeEEecC
Confidence 22 12334677888888764
No 81
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=35.81 E-value=1.7e+02 Score=27.32 Aligned_cols=87 Identities=10% Similarity=0.084 Sum_probs=54.5
Q ss_pred eeecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCCc----e
Q 028660 13 GIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETAN----G 88 (206)
Q Consensus 13 Gidi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~----g 88 (206)
.+.+. ...+.+.+|.|....|-+-..++ .-.++||++.+.--+=+|. -...|+||++..... .
T Consensus 341 Al~v~-~D~~~fy~C~~~G~QDTLy~~~~--rqyy~~C~I~GtVDFIFG~----------a~avfq~C~i~~r~~~~~~~ 407 (537)
T PLN02506 341 ALRVD-SDQSAFYRCSMEGYQDTLYAHSL--RQFYRECEIYGTIDFIFGN----------GAAVLQNCKIYTRVPLPLQK 407 (537)
T ss_pred EEEec-CCcEEEEcceeecccccceecCC--ceEEEeeEEecccceEccC----------ceeEEeccEEEEccCCCCCC
Confidence 34444 46899999999988888877653 3588999988766666653 235677777764211 1
Q ss_pred eEEEEecCCC--CeEEeEEEEeEEEeC
Q 028660 89 VRIKTWQGGS--GYASNIIFQNIDMVN 113 (206)
Q Consensus 89 i~iks~~g~~--g~i~nI~~~ni~~~~ 113 (206)
-.|..+ +|. ..-..+.|+|+++..
T Consensus 408 ~~iTA~-~r~~~~~~~G~vf~~c~i~~ 433 (537)
T PLN02506 408 VTITAQ-GRKSPHQSTGFSIQDSYVLA 433 (537)
T ss_pred ceEEcc-CCCCCCCCcEEEEEcCEEcc
Confidence 233322 221 222456788888775
No 82
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=35.44 E-value=76 Score=29.53 Aligned_cols=41 Identities=7% Similarity=0.067 Sum_probs=26.2
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeCC-CeeEE
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGPG-HGISI 60 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~~-~gi~i 60 (206)
.++..+|..|.|. .-++|+........+.||.|.+- +-|..
T Consensus 313 ~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~ 359 (529)
T PLN02170 313 DGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYT 359 (529)
T ss_pred CCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCccee
Confidence 4566666666654 34677776677788888888653 34443
No 83
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=35.01 E-value=84 Score=29.16 Aligned_cols=41 Identities=7% Similarity=-0.045 Sum_probs=26.5
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeCC-CeeEE
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGPG-HGISI 60 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~~-~gi~i 60 (206)
++...+|..|.|. .-++++........+.||.|.+- +-|..
T Consensus 293 ~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~ 339 (520)
T PLN02201 293 RGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYT 339 (520)
T ss_pred CCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEe
Confidence 4555666666653 35777777677888888888753 34444
No 84
>PLN02304 probable pectinesterase
Probab=35.00 E-value=1.4e+02 Score=26.65 Aligned_cols=21 Identities=5% Similarity=-0.100 Sum_probs=14.4
Q ss_pred ceEEEcCCCeeEEEEeeEEeC
Q 028660 34 DCISIVSGSQNVQAQDITCGP 54 (206)
Q Consensus 34 D~i~iksgs~nI~I~nc~~~~ 54 (206)
-++++........+.||.|.+
T Consensus 186 QAVAL~v~gDra~fy~C~f~G 206 (379)
T PLN02304 186 QAVAIRIAGDQAAFWGCGFFG 206 (379)
T ss_pred cEEEEEecCCcEEEEeceEec
Confidence 366666666777777777765
No 85
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=34.85 E-value=51 Score=31.57 Aligned_cols=14 Identities=14% Similarity=0.086 Sum_probs=8.6
Q ss_pred EEEEEEceEEecCC
Q 028660 73 SEVTVDGAKLSETA 86 (206)
Q Consensus 73 ~nI~~~n~~~~~~~ 86 (206)
....|.||.|++..
T Consensus 365 Dra~fy~C~f~G~Q 378 (670)
T PLN02217 365 DESIFYNCKFDGYQ 378 (670)
T ss_pred CcEEEEcceeeecc
Confidence 45667777776543
No 86
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=34.32 E-value=66 Score=29.96 Aligned_cols=41 Identities=2% Similarity=0.026 Sum_probs=28.0
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeC-CCeeEE
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGP-GHGISI 60 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~-~~gi~i 60 (206)
++...+|..|.|. .-+|++........+.||.|.+ .+-|..
T Consensus 313 ~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~ 359 (538)
T PLN03043 313 ERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYV 359 (538)
T ss_pred CCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCccccc
Confidence 4677777777763 3577887777778888888875 334444
No 87
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=34.14 E-value=2.1e+02 Score=26.81 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=53.9
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCCc----eeEEEEe
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETAN----GVRIKTW 94 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~----gi~iks~ 94 (206)
+....+.+|.|....|-+-..++ .-.++||++.+.--+=+|. -...|+||++.-... .-.|..+
T Consensus 350 ~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----------a~avfq~c~i~~~~~~~~~~~~iTAq 417 (548)
T PLN02301 350 ADQAVINRCRIDAYQDTLYAHSL--RQFYRDSYITGTVDFIFGN----------AAVVFQNCKIVARKPMAGQKNMVTAQ 417 (548)
T ss_pred CCcEEEEeeeeeeccccceecCC--cEEEEeeEEEeccceeccc----------ceeEEeccEEEEecCCCCCCceEEec
Confidence 46889999999998888887753 3588999998766666653 245677777754321 1123322
Q ss_pred cCC--CCeEEeEEEEeEEEeCC
Q 028660 95 QGG--SGYASNIIFQNIDMVNV 114 (206)
Q Consensus 95 ~g~--~g~i~nI~~~ni~~~~~ 114 (206)
+| ...-..+.|.|+++...
T Consensus 418 -gr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 418 -GRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred -CCCCCCCCCEEEEEeeEEecC
Confidence 22 12334677888888754
No 88
>PLN02682 pectinesterase family protein
Probab=33.63 E-value=3.4e+02 Score=24.06 Aligned_cols=82 Identities=11% Similarity=0.022 Sum_probs=51.3
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCCc-eeEEEEecCC
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETAN-GVRIKTWQGG 97 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~-gi~iks~~g~ 97 (206)
.....+.||.|....|-+-...+ .-.++||++.+.--+=+|. -...|++|++..... .-.|... +|
T Consensus 195 gDr~~fy~C~f~G~QDTLy~~~g--Rqyf~~C~IeG~VDFIFG~----------g~a~Fe~C~I~s~~~~~G~ITA~-~r 261 (369)
T PLN02682 195 ADTAAFYGCKFLGAQDTLYDHLG--RHYFKDCYIEGSVDFIFGN----------GLSLYEGCHLHAIARNFGALTAQ-KR 261 (369)
T ss_pred CCcEEEEcceEeccccceEECCC--CEEEEeeEEcccccEEecC----------ceEEEEccEEEEecCCCeEEecC-CC
Confidence 46889999999988888877643 4688899888766666653 245677777754222 1123322 11
Q ss_pred --CCeEEeEEEEeEEEeC
Q 028660 98 --SGYASNIIFQNIDMVN 113 (206)
Q Consensus 98 --~g~i~nI~~~ni~~~~ 113 (206)
...-....|.|+++..
T Consensus 262 ~~~~~~~GfvF~~C~itg 279 (369)
T PLN02682 262 QSVLEDTGFSFVNCKVTG 279 (369)
T ss_pred CCCCCCceEEEEeeEecC
Confidence 1122356678888765
No 89
>PLN02197 pectinesterase
Probab=33.52 E-value=2.3e+02 Score=26.86 Aligned_cols=83 Identities=14% Similarity=0.208 Sum_probs=51.8
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCC--ce--eEEEEe
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETA--NG--VRIKTW 94 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~--~g--i~iks~ 94 (206)
+....+.+|.|....|-+-..++ .=.+++|++.+.--+=+|. -...|+||+++-.. .+ -.|..
T Consensus 391 ~D~~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----------a~avfq~C~i~~r~~~~~~~~~iTA- 457 (588)
T PLN02197 391 GDRAVIFNCRFDGYQDTLYVNNG--RQFYRNIVVSGTVDFIFGK----------SATVIQNSLIVVRKGSKGQYNTVTA- 457 (588)
T ss_pred CCcEEEEEeEEEecCcceEecCC--CEEEEeeEEEecccccccc----------eeeeeecCEEEEecCCCCCceeEEC-
Confidence 46889999999998888887753 3488899988765565653 12667777775321 11 12222
Q ss_pred cCCC---CeEEeEEEEeEEEeCC
Q 028660 95 QGGS---GYASNIIFQNIDMVNV 114 (206)
Q Consensus 95 ~g~~---g~i~nI~~~ni~~~~~ 114 (206)
.+|. ..-..+.|.|+++...
T Consensus 458 qgr~~~~~~~tG~vf~~C~it~~ 480 (588)
T PLN02197 458 DGNEKGLAMKIGIVLQNCRIVPD 480 (588)
T ss_pred CCCCCCCCCCcEEEEEccEEecC
Confidence 2321 2234577888887753
No 90
>PLN02634 probable pectinesterase
Probab=33.41 E-value=1.7e+02 Score=25.86 Aligned_cols=41 Identities=5% Similarity=0.028 Sum_probs=23.1
Q ss_pred CeeEEEEeeEEe------CCCeeEEEeccCCCCCCcEEEEEEEceEEecCCceeE
Q 028660 42 SQNVQAQDITCG------PGHGISIGSLGKGNSNAYVSEVTVDGAKLSETANGVR 90 (206)
Q Consensus 42 s~nI~I~nc~~~------~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~gi~ 90 (206)
.+||+|+|..-. .+.++++-.. -....|.+|.+++...-|.
T Consensus 153 a~niTf~Nta~~~~~g~~~~QAVAl~v~--------gDra~f~~C~f~G~QDTL~ 199 (359)
T PLN02634 153 ARNISFKNTAPAPMPGMQGWQAVAFRIS--------GDKAFFFGCGFYGAQDTLC 199 (359)
T ss_pred EEeCeEEeCCccCCCCCCCCceEEEEec--------CCcEEEEEeEEecccceee
Confidence 357777777532 1245555332 3457788888877544444
No 91
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=32.67 E-value=76 Score=29.92 Aligned_cols=35 Identities=6% Similarity=0.008 Sum_probs=24.0
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeC
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGP 54 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~ 54 (206)
++...+|+.|.|. .-++++........+.||.|.+
T Consensus 360 ~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G 399 (587)
T PLN02484 360 AGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIG 399 (587)
T ss_pred CCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEec
Confidence 4566666666653 3577777777788888888765
No 92
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=32.61 E-value=2.1e+02 Score=27.10 Aligned_cols=83 Identities=8% Similarity=0.067 Sum_probs=53.9
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCC----ceeEEEEe
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETA----NGVRIKTW 94 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~----~gi~iks~ 94 (206)
.....+.+|.|....|-+-..++ .=.+++|++.+.--+=+|. -...|+||+++-.. ..-.|..+
T Consensus 389 ~D~~~fy~C~~~g~QDTLy~~~~--rq~y~~c~I~GtvDFIFG~----------a~avfq~c~i~~r~~~~~~~~~iTAq 456 (587)
T PLN02313 389 SDFSAFYQCDMFAYQDTLYVHSN--RQFFVKCHITGTVDFIFGN----------AAAVLQDCDINARRPNSGQKNMVTAQ 456 (587)
T ss_pred CCcEEEEeeeEecccchhccCCC--cEEEEeeEEeeccceeccc----------eeEEEEccEEEEecCCCCCcceEEec
Confidence 46788999999988888877753 3488999998766666653 35678888886431 11223332
Q ss_pred cCC--CCeEEeEEEEeEEEeCC
Q 028660 95 QGG--SGYASNIIFQNIDMVNV 114 (206)
Q Consensus 95 ~g~--~g~i~nI~~~ni~~~~~ 114 (206)
+| ...-..+.|+|+++...
T Consensus 457 -gr~~~~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 457 -GRSDPNQNTGIVIQNCRIGGT 477 (587)
T ss_pred -CCCCCCCCceEEEEecEEecC
Confidence 22 12334678888888754
No 93
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=31.80 E-value=2.7e+02 Score=26.16 Aligned_cols=54 Identities=11% Similarity=0.011 Sum_probs=37.6
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEec
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSE 84 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~ 84 (206)
.....+.+|.|....|-+-..++ .-.+++|++.+.--+=+|. -...|+||.+..
T Consensus 367 ~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----------a~avfq~C~i~~ 420 (566)
T PLN02713 367 ADLSTFYSCSFEAYQDTLYTHSL--RQFYRECDIYGTVDFIFGN----------AAVVFQNCNLYP 420 (566)
T ss_pred CCcEEEEeeeeccCCcceEECCC--CEEEEeeEEecccceeccc----------ceEEEeccEEEE
Confidence 45788999999988888877753 3588888887665555653 245666666654
No 94
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=31.26 E-value=4.4e+02 Score=24.62 Aligned_cols=83 Identities=8% Similarity=0.021 Sum_probs=51.4
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCC----ceeEEEEe
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETA----NGVRIKTW 94 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~----~gi~iks~ 94 (206)
.....+.+|.|....|-+-..++ .-.++||++.+.--+=+|. -...|+||+++-.. ..-.|..+
T Consensus 340 ~D~~~f~~C~~~gyQDTLy~~~~--rq~y~~c~I~GtVDFIFG~----------a~avfq~c~i~~r~~~~~~~~~iTA~ 407 (538)
T PLN03043 340 ADLSTFYRCSFEGYQDTLYVHSL--RQFYRECDIYGTVDFIFGN----------AAAIFQNCNLYARKPMANQKNAFTAQ 407 (538)
T ss_pred CCcEEEEeeEEeccCcccccCCC--cEEEEeeEEeeccceEeec----------ceeeeeccEEEEecCCCCCCceEEec
Confidence 45788999999988888777653 3588888888766666653 24567777775421 11223222
Q ss_pred cCCC--CeEEeEEEEeEEEeCC
Q 028660 95 QGGS--GYASNIIFQNIDMVNV 114 (206)
Q Consensus 95 ~g~~--g~i~nI~~~ni~~~~~ 114 (206)
+|. ..-..+.|.|+++...
T Consensus 408 -~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 408 -GRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred -CCCCCCCCceEEEEecEEecC
Confidence 221 2223567888887653
No 95
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=31.24 E-value=1.4e+02 Score=28.29 Aligned_cols=35 Identities=9% Similarity=0.004 Sum_probs=23.7
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeC
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGP 54 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~ 54 (206)
.++..+|..|.|. .-++++........+.||.|.+
T Consensus 372 ~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G 411 (596)
T PLN02745 372 EGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEG 411 (596)
T ss_pred CCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEee
Confidence 4566666666652 3567777767778888888765
No 96
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=30.72 E-value=81 Score=29.61 Aligned_cols=35 Identities=6% Similarity=0.038 Sum_probs=25.1
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeC
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGP 54 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~ 54 (206)
+++..+|..|.|. .-++++........+.||.|.+
T Consensus 345 ~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G 384 (565)
T PLN02468 345 KGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDA 384 (565)
T ss_pred CCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEe
Confidence 4677777777653 3577777777788888888865
No 97
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=29.66 E-value=2.4e+02 Score=24.93 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=14.9
Q ss_pred CCCeeecCCcccEEEEeeEEe
Q 028660 10 NTDGIHVTNTQNIRITSSTIG 30 (206)
Q Consensus 10 n~DGidi~~s~nV~I~n~~i~ 30 (206)
--|||=.+.|++-.+++..++
T Consensus 171 ~rDgIy~~~S~~~~~~gnr~~ 191 (408)
T COG3420 171 GRDGIYSDTSQHNVFKGNRFR 191 (408)
T ss_pred ccceEEEcccccceecccchh
Confidence 457888887777777766655
No 98
>PLN02665 pectinesterase family protein
Probab=29.51 E-value=4e+02 Score=23.58 Aligned_cols=41 Identities=2% Similarity=-0.031 Sum_probs=27.5
Q ss_pred cccEEEEeeEEecC----------CceEEEcCCCeeEEEEeeEEeCC-CeeE
Q 028660 19 TQNIRITSSTIGTG----------DDCISIVSGSQNVQAQDITCGPG-HGIS 59 (206)
Q Consensus 19 s~nV~I~n~~i~~~----------DD~i~iksgs~nI~I~nc~~~~~-~gi~ 59 (206)
+.++..+|.+|.|. .-++++.-......+.||.|.+. +-|.
T Consensus 153 a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~ 204 (366)
T PLN02665 153 SDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLC 204 (366)
T ss_pred CCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeE
Confidence 45667777777763 24677776677888888888763 3343
No 99
>PLN02671 pectinesterase
Probab=29.38 E-value=4e+02 Score=23.54 Aligned_cols=40 Identities=5% Similarity=-0.029 Sum_probs=27.0
Q ss_pred ccEEEEeeEEecC---------CceEEEcCCCeeEEEEeeEEeCC-CeeE
Q 028660 20 QNIRITSSTIGTG---------DDCISIVSGSQNVQAQDITCGPG-HGIS 59 (206)
Q Consensus 20 ~nV~I~n~~i~~~---------DD~i~iksgs~nI~I~nc~~~~~-~gi~ 59 (206)
.+...+|.+|.|. .-++|+......+.+.||.|.+- +-|-
T Consensus 154 ~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy 203 (359)
T PLN02671 154 DYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLL 203 (359)
T ss_pred CceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccccE
Confidence 3555556666654 24778777678999999999864 3444
No 100
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=29.11 E-value=4.8e+02 Score=24.37 Aligned_cols=83 Identities=8% Similarity=0.072 Sum_probs=51.8
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCC----ceeEEEEe
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETA----NGVRIKTW 94 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~----~gi~iks~ 94 (206)
.....+.+|.|....|-+-..++ .-.+++|++.+.--+=+|. -...|+||.+.... ..-.|...
T Consensus 332 ~Dra~fy~C~f~G~QDTLy~~~~--Rqyy~~C~IeGtVDFIFG~----------a~avFq~C~i~~~~~~~~~~~~iTAq 399 (530)
T PLN02933 332 SDHSAFYRCEFDGYQDTLYVHSA--KQFYRECDIYGTIDFIFGN----------AAVVFQNCSLYARKPNPNHKIAFTAQ 399 (530)
T ss_pred CCcEEEEEeEEEecccccccCCC--ceEEEeeEEecccceeccC----------ceEEEeccEEEEeccCCCCceEEEec
Confidence 56789999999988887777653 3488999988766666653 13566777775321 11223322
Q ss_pred cCC--CCeEEeEEEEeEEEeCC
Q 028660 95 QGG--SGYASNIIFQNIDMVNV 114 (206)
Q Consensus 95 ~g~--~g~i~nI~~~ni~~~~~ 114 (206)
+| ...-..+.|.|+++...
T Consensus 400 -~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 400 -SRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred -CCCCCCCCceEEEEeeEEecC
Confidence 22 12223577888888653
No 101
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=28.63 E-value=3.7e+02 Score=22.90 Aligned_cols=89 Identities=9% Similarity=0.081 Sum_probs=51.9
Q ss_pred eeecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCC----ce
Q 028660 13 GIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETA----NG 88 (206)
Q Consensus 13 Gidi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~----~g 88 (206)
.+.+.+ ..+.+.+|.|...-|-+-..+ ..-.++||++.+.--+=+|+- ...|++|++.... ..
T Consensus 109 Al~~~~-d~~~f~~c~~~g~QDTL~~~~--~r~y~~~c~IeG~vDFIfG~~----------~a~f~~c~i~~~~~~~~~~ 175 (298)
T PF01095_consen 109 ALRVSG-DRAAFYNCRFLGYQDTLYANG--GRQYFKNCYIEGNVDFIFGNG----------TAVFENCTIHSRRPGGGQG 175 (298)
T ss_dssp SEEET--TSEEEEEEEEE-STT-EEE-S--SEEEEES-EEEESEEEEEESS----------EEEEES-EEEE--SSTSST
T ss_pred eeeecC-CcEEEEEeEEccccceeeecc--ceeEEEeeEEEecCcEEECCe----------eEEeeeeEEEEeccccccc
Confidence 344443 578999999999888888775 357889999997777777741 3468888887532 12
Q ss_pred eEEEEec-CCCCeEEeEEEEeEEEeCC
Q 028660 89 VRIKTWQ-GGSGYASNIIFQNIDMVNV 114 (206)
Q Consensus 89 i~iks~~-g~~g~i~nI~~~ni~~~~~ 114 (206)
..|.... .....-....|.|+++...
T Consensus 176 ~~ItA~~r~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 176 GYITAQGRTSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp EEEEEE---CTTSS-EEEEES-EEEES
T ss_pred eeEEeCCccccCCCeEEEEEEeEEecC
Confidence 3443321 0112334668999999864
No 102
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=28.55 E-value=93 Score=29.26 Aligned_cols=35 Identities=0% Similarity=-0.000 Sum_probs=21.8
Q ss_pred ccEEEEeeEEecC-----CceEEEcCCCeeEEEEeeEEeC
Q 028660 20 QNIRITSSTIGTG-----DDCISIVSGSQNVQAQDITCGP 54 (206)
Q Consensus 20 ~nV~I~n~~i~~~-----DD~i~iksgs~nI~I~nc~~~~ 54 (206)
++...+|+.|.|. .-++++........+.||.|.+
T Consensus 347 ~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G 386 (572)
T PLN02990 347 DHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDG 386 (572)
T ss_pred CCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEec
Confidence 3455556666543 3567776666777777777764
No 103
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=28.26 E-value=5e+02 Score=24.28 Aligned_cols=88 Identities=10% Similarity=0.113 Sum_probs=54.7
Q ss_pred eeecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCCc---ee
Q 028660 13 GIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETAN---GV 89 (206)
Q Consensus 13 Gidi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~---gi 89 (206)
.+.+. .....+.+|.|....|-+-..++ .-.+++|++.+.--+=+|. -...|+||++..... .-
T Consensus 335 ALrv~-gDr~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----------a~avFq~C~I~~~~~~~~~g 401 (529)
T PLN02170 335 ALRVG-SDKSVVYRCSVEGYQDSLYTHSK--RQFYRETDITGTVDFIFGN----------SAVVFQSCNIAARKPSGDRN 401 (529)
T ss_pred EEEec-CCcEEEEeeeEeccCCcceeCCC--CEEEEeeEEccccceeccc----------ceEEEeccEEEEecCCCCce
Confidence 33444 45789999999988888887653 4578999998766666653 245677777764321 12
Q ss_pred EEEEecCC--CCeEEeEEEEeEEEeCC
Q 028660 90 RIKTWQGG--SGYASNIIFQNIDMVNV 114 (206)
Q Consensus 90 ~iks~~g~--~g~i~nI~~~ni~~~~~ 114 (206)
.|... +| ...-..+.|.|+++...
T Consensus 402 ~ITAq-~R~~~~~~~Gfvf~~C~it~~ 427 (529)
T PLN02170 402 YVTAQ-GRSDPNQNTGISIHNCRITAE 427 (529)
T ss_pred EEEec-CCCCCCCCceEEEEeeEEecC
Confidence 33322 22 12234567888888763
No 104
>PLN02314 pectinesterase
Probab=27.89 E-value=2.6e+02 Score=26.40 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=51.8
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCC----ceeEEEEe
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETA----NGVRIKTW 94 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~----~gi~iks~ 94 (206)
.....+.+|.|....|-+-..++ .-.+++|++.+.--+=+|. -...|+||.++-.. ..-.|..
T Consensus 392 ~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtvDFIFG~----------a~avf~~c~i~~~~~~~~~~~~iTA- 458 (586)
T PLN02314 392 SDMSVFYQCSFDAFQDTLYAHSN--RQFYRDCDITGTIDFIFGN----------AAVVFQNCNIQPRQPLPNQFNTITA- 458 (586)
T ss_pred CCcEEEEeeEEEeccchheeCCC--CEEEEeeEEEeccceeccC----------ceeeeeccEEEEecCCCCCCceEec-
Confidence 45788999999988888877653 3588899988765666653 24567777775321 1112322
Q ss_pred cCC--CCeEEeEEEEeEEEeCC
Q 028660 95 QGG--SGYASNIIFQNIDMVNV 114 (206)
Q Consensus 95 ~g~--~g~i~nI~~~ni~~~~~ 114 (206)
.+| ...-..+.|.|+++...
T Consensus 459 ~~r~~~~~~~G~vf~~c~i~~~ 480 (586)
T PLN02314 459 QGKKDPNQNTGISIQRCTISAF 480 (586)
T ss_pred CCCCCCCCCCEEEEEeeEEecC
Confidence 222 13334567888888764
No 105
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=27.82 E-value=2.6e+02 Score=26.19 Aligned_cols=83 Identities=14% Similarity=0.144 Sum_probs=51.9
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCCc--e--eEEEEe
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETAN--G--VRIKTW 94 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~--g--i~iks~ 94 (206)
...+.+.+|.|....|-+-..+ ..-.+++|++.+.--+=+|. -...|+||++..... + -.|..
T Consensus 344 ~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~----------a~avfq~c~i~~~~~~~~~~~~iTA- 410 (541)
T PLN02416 344 ADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIFGN----------AAVVFQACNIVSKMPMPGQFTVITA- 410 (541)
T ss_pred CccEEEEcceEecccchhccCC--CceEEEeeEEeeccceeecc----------ceEEEeccEEEEecCCCCCceEEEC-
Confidence 4679999999998888877765 34588999998766666653 245677777754211 1 12222
Q ss_pred cCCC--CeEEeEEEEeEEEeCC
Q 028660 95 QGGS--GYASNIIFQNIDMVNV 114 (206)
Q Consensus 95 ~g~~--g~i~nI~~~ni~~~~~ 114 (206)
.+|. ..-..+.|.|+++...
T Consensus 411 ~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 411 QSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred CCCCCCCCCCEEEEEeeEEecC
Confidence 2221 2234677888888643
No 106
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=27.50 E-value=2.5e+02 Score=25.95 Aligned_cols=83 Identities=10% Similarity=0.025 Sum_probs=51.7
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCCc--e--eEEEEe
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETAN--G--VRIKTW 94 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~--g--i~iks~ 94 (206)
.....+.+|.|....|-+-..++ .=.+++|++.+.--+=+|. -...|+||++..... + -.|...
T Consensus 297 ~D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G~vDFIFG~----------a~avf~~C~i~~~~~~~~~~~~iTAq 364 (497)
T PLN02698 297 SDHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYGTIDFIFGN----------AAAVFQNCYLFLRRPHGKSYNVILAN 364 (497)
T ss_pred CCcEEEEcceeecccchheeCCC--cEEEEeeEEEeccceEecc----------cceeecccEEEEecCCCCCceEEEec
Confidence 46888999999988888777653 3488889888665666653 134677777764211 1 123221
Q ss_pred cCC--CCeEEeEEEEeEEEeCC
Q 028660 95 QGG--SGYASNIIFQNIDMVNV 114 (206)
Q Consensus 95 ~g~--~g~i~nI~~~ni~~~~~ 114 (206)
+| ...-..+.|.++++...
T Consensus 365 -~r~~~~~~~G~vf~~c~i~~~ 385 (497)
T PLN02698 365 -GRSDPGQNTGFSLQSCRIRTS 385 (497)
T ss_pred -CCCCCCCCceEEEEeeEEecC
Confidence 22 12234577888888754
No 107
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=27.16 E-value=5.4e+02 Score=24.34 Aligned_cols=83 Identities=8% Similarity=0.063 Sum_probs=51.4
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCC----ceeEEEEe
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETA----NGVRIKTW 94 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~----~gi~iks~ 94 (206)
.....+.||.|....|-+-..++ .=.+++|++.+.--+=+|. -...|+||+++... ..-.|...
T Consensus 387 ~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----------a~avfq~C~i~~~~~~~~~~~~ITAq 454 (587)
T PLN02484 387 ADHAVVYRCNIIGYQDTLYVHSN--RQFFRECDIYGTVDFIFGN----------AAVVLQNCSIYARKPMAQQKNTITAQ 454 (587)
T ss_pred CCcEEEEeeeEeccCcccccCCC--cEEEEecEEEeccceeccc----------ceeEEeccEEEEecCCCCCceEEEec
Confidence 45788999999988888777653 3578888888665666653 24567777775421 11233322
Q ss_pred cCC--CCeEEeEEEEeEEEeCC
Q 028660 95 QGG--SGYASNIIFQNIDMVNV 114 (206)
Q Consensus 95 ~g~--~g~i~nI~~~ni~~~~~ 114 (206)
+| ...-..+.|.|+++...
T Consensus 455 -~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 455 -NRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred -CCCCCCCCcEEEEEeeEEecC
Confidence 22 12334667888888653
No 108
>PLN02665 pectinesterase family protein
Probab=26.16 E-value=4.6e+02 Score=23.20 Aligned_cols=18 Identities=0% Similarity=0.021 Sum_probs=11.8
Q ss_pred EEEEEEceEEecCCceeE
Q 028660 73 SEVTVDGAKLSETANGVR 90 (206)
Q Consensus 73 ~nI~~~n~~~~~~~~gi~ 90 (206)
....|.||.+++...-|.
T Consensus 187 Dka~f~~C~f~G~QDTL~ 204 (366)
T PLN02665 187 DKAAFYNCRFIGFQDTLC 204 (366)
T ss_pred CcEEEEcceeccccceeE
Confidence 467788888877544443
No 109
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=25.94 E-value=39 Score=28.23 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=14.2
Q ss_pred CCeEEeEEEEeEEEeCC
Q 028660 98 SGYASNIIFQNIDMVNV 114 (206)
Q Consensus 98 ~g~i~nI~~~ni~~~~~ 114 (206)
+|.|+||.++|+.+...
T Consensus 211 gatI~nL~l~nv~I~~~ 227 (250)
T PF05342_consen 211 GATIKNLNLKNVNINGP 227 (250)
T ss_pred CCEEEcceeEEeeeecc
Confidence 48999999999888865
No 110
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=25.90 E-value=5e+02 Score=23.51 Aligned_cols=95 Identities=8% Similarity=0.067 Sum_probs=55.4
Q ss_pred EEEEEEEceEEecCCceeEEEEecCCC----CeEEeEEEEeEEEeCCCccEEEEeEeCCCCCCCccCCceeEEeEEEEEe
Q 028660 72 VSEVTVDGAKLSETANGVRIKTWQGGS----GYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKN 147 (206)
Q Consensus 72 i~nI~~~n~~~~~~~~gi~iks~~g~~----g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~n 147 (206)
-..+.|++|.+++...=|...+..... .....-.|+|+.|++. ++.-|+. ....+++-+|.-
T Consensus 237 GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~-----VDFIFG~---------g~AvFenC~I~s 302 (422)
T PRK10531 237 GDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGD-----VDFVFGR---------GAVVFDNTEFRV 302 (422)
T ss_pred CCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeec-----ccEEccC---------ceEEEEcCEEEE
Confidence 457889999999876667764322111 1234578999999974 2333322 345666666665
Q ss_pred EEEEcCCCceEEEEcC--CCCCEEcEEEEeEEEEecC
Q 028660 148 IRGTSASDEAVKLDCS--KSYPCEAIVLENINLQSEE 182 (206)
Q Consensus 148 i~~~~~~~~~~~i~g~--~~~~i~ni~~~Nv~v~~~~ 182 (206)
+.-... ...+|... ....=.++.|.|.++++..
T Consensus 303 ~~~~~~--~~g~ITA~~t~~~~~~GfvF~nCrit~~g 337 (422)
T PRK10531 303 VNSRTQ--QEAYVFAPATLPNIYYGFLAINSRFNASG 337 (422)
T ss_pred ecCCCC--CceEEEecCCCCCCCCEEEEECCEEecCC
Confidence 532111 22444322 2223358999999998843
No 111
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=24.98 E-value=3.6e+02 Score=25.54 Aligned_cols=83 Identities=7% Similarity=0.019 Sum_probs=52.3
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCC----ceeEEEEe
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETA----NGVRIKTW 94 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~----~gi~iks~ 94 (206)
+....+.||.|....|-+-..+ ..-.+++|++.+.--+=+|. -...|+||++.-.. ..-.|...
T Consensus 399 ~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~----------a~avf~~C~i~~~~~~~~~~~~iTAq 466 (596)
T PLN02745 399 SDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGD----------AAAIFQNCLIFVRKPLPNQQNTVTAQ 466 (596)
T ss_pred CCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecc----------eeEEEEecEEEEecCCCCCCceEEec
Confidence 5688999999998888777664 34688999988765566653 34567777775421 11223322
Q ss_pred cCCC--CeEEeEEEEeEEEeCC
Q 028660 95 QGGS--GYASNIIFQNIDMVNV 114 (206)
Q Consensus 95 ~g~~--g~i~nI~~~ni~~~~~ 114 (206)
+|. ..-..+.|.|+++...
T Consensus 467 -~r~~~~~~~Gfvf~~c~i~~~ 487 (596)
T PLN02745 467 -GRVDKFETTGIVLQNCRIAPD 487 (596)
T ss_pred -CCCCCCCCceEEEEeeEEecC
Confidence 221 2234677888888754
No 112
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=24.42 E-value=5.8e+02 Score=23.74 Aligned_cols=83 Identities=8% Similarity=-0.017 Sum_probs=54.9
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCC----ceeEEEEe
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETA----NGVRIKTW 94 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~----~gi~iks~ 94 (206)
+....+.+|.|....|-+-..+ ..-.+++|++.+.--+=+|. -...|+||+++... ..-.|...
T Consensus 311 ~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~----------a~avFq~C~I~sr~~~~~~~~~ITAq 378 (509)
T PLN02488 311 GDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGN----------AAAVFQFCQIVARQPMMGQSNVITAQ 378 (509)
T ss_pred CCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecc----------eEEEEEccEEEEecCCCCCCEEEEeC
Confidence 5688999999998888887764 34688999998776666653 35678888886531 11234332
Q ss_pred cCCC--CeEEeEEEEeEEEeCC
Q 028660 95 QGGS--GYASNIIFQNIDMVNV 114 (206)
Q Consensus 95 ~g~~--g~i~nI~~~ni~~~~~ 114 (206)
+|. ..-..+.|.|+++...
T Consensus 379 -~R~~~~~~tGfvf~~C~it~~ 399 (509)
T PLN02488 379 -SRESKDDNSGFSIQKCNITAS 399 (509)
T ss_pred -CCCCCCCCcEEEEEeeEEecC
Confidence 221 2234578888888764
No 113
>PLN02671 pectinesterase
Probab=24.29 E-value=2.6e+02 Score=24.71 Aligned_cols=40 Identities=0% Similarity=0.005 Sum_probs=23.3
Q ss_pred eeEEEEeeEEeC-----CCeeEEEeccCCCCCCcEEEEEEEceEEecCCceeE
Q 028660 43 QNVQAQDITCGP-----GHGISIGSLGKGNSNAYVSEVTVDGAKLSETANGVR 90 (206)
Q Consensus 43 ~nI~I~nc~~~~-----~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~~gi~ 90 (206)
+||+|+|..... +.++++-. .-....|.||.+++...-|.
T Consensus 159 ~nitfeNt~~~~~g~~~~QAVALrv--------~gDra~f~~c~f~G~QDTLy 203 (359)
T PLN02671 159 TGITFENTVVAEPGGQGMQAVALRI--------SGDKAFFYKVRVLGAQDTLL 203 (359)
T ss_pred EeeEEEcCCCCCCCCCCccEEEEEE--------cCccEEEEcceEeccccccE
Confidence 577777774321 23555532 13567888888887544443
No 114
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=24.01 E-value=3.4e+02 Score=25.51 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=51.3
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCC----ceeEEEEe
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETA----NGVRIKTW 94 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~----~gi~iks~ 94 (206)
.....+.||.|....|-+-..++ .-.+++|++.+.--+=+|. -...|+||+++... ..-.|...
T Consensus 372 ~D~~~fy~c~~~G~QDTLy~~~~--rq~y~~C~I~GtvDFIFG~----------a~avfq~c~i~~~~~~~~~~~~iTA~ 439 (565)
T PLN02468 372 ADLSVFYRCTMDAFQDTLYAHAQ--RQFYRECNIYGTVDFIFGN----------SAVVFQNCNILPRRPMKGQQNTITAQ 439 (565)
T ss_pred CCcEEEEEeEEEeccchhccCCC--ceEEEeeEEecccceeecc----------ceEEEeccEEEEecCCCCCCceEEec
Confidence 56788999999988887777653 3568888888766666653 24567777775321 11223322
Q ss_pred cCC--CCeEEeEEEEeEEEeCC
Q 028660 95 QGG--SGYASNIIFQNIDMVNV 114 (206)
Q Consensus 95 ~g~--~g~i~nI~~~ni~~~~~ 114 (206)
+| ...-..+.|.|+++...
T Consensus 440 -~r~~~~~~~G~vf~~c~i~~~ 460 (565)
T PLN02468 440 -GRTDPNQNTGISIQNCTILPL 460 (565)
T ss_pred -CCCCCCCCceEEEEccEEecC
Confidence 22 12234567788877754
No 115
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=23.68 E-value=6.3e+02 Score=23.86 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=51.3
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCC----ceeEEEEe
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETA----NGVRIKTW 94 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~----~gi~iks~ 94 (206)
.....+.+|.|....|-+-..++ .-.+++|++.+.--+=+|. -...|+||++.... ..-.|...
T Consensus 374 ~D~~~f~~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----------a~avf~~C~i~~~~~~~~~~~~iTAq 441 (572)
T PLN02990 374 ADYAVFYNCQIDGYQDTLYVHSH--RQFFRDCTVSGTVDFIFGD----------AKVVLQNCNIVVRKPMKGQSCMITAQ 441 (572)
T ss_pred CCcEEEEeeeEecccchhccCCC--cEEEEeeEEecccceEccC----------ceEEEEccEEEEecCCCCCceEEEeC
Confidence 45788999999988787777643 4577888888766666653 23567777775421 11233322
Q ss_pred cCCC--CeEEeEEEEeEEEeCC
Q 028660 95 QGGS--GYASNIIFQNIDMVNV 114 (206)
Q Consensus 95 ~g~~--g~i~nI~~~ni~~~~~ 114 (206)
+|. ..-..+.|.|+++...
T Consensus 442 -~r~~~~~~~G~vf~~C~it~~ 462 (572)
T PLN02990 442 -GRSDVRESTGLVLQNCHITGE 462 (572)
T ss_pred -CCCCCCCCceEEEEeeEEecC
Confidence 221 2223567888888764
No 116
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=22.20 E-value=1.8e+02 Score=19.99 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=10.9
Q ss_pred EEEEceEEecCCceeEEE
Q 028660 75 VTVDGAKLSETANGVRIK 92 (206)
Q Consensus 75 I~~~n~~~~~~~~gi~ik 92 (206)
+.++|+.+.....|+.+.
T Consensus 29 f~I~~ikVieg~~GlFVa 46 (84)
T PF04026_consen 29 FVIHDIKVIEGEKGLFVA 46 (84)
T ss_dssp EEEEEEEEEEETTEEEEE
T ss_pred EEEEeEEEEECCCCcEEE
Confidence 555556666666666665
No 117
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=20.70 E-value=6.9e+02 Score=23.27 Aligned_cols=82 Identities=6% Similarity=0.014 Sum_probs=51.4
Q ss_pred cccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecCC----ceeEEEEe
Q 028660 19 TQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETA----NGVRIKTW 94 (206)
Q Consensus 19 s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~~----~gi~iks~ 94 (206)
.....+.+|.|....|-+-..++ .-.+++|++.+.--+=+|. -...|+||++.... ..-.|...
T Consensus 320 ~D~~~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----------a~avf~~C~i~~~~~~~~~~~~iTAq 387 (520)
T PLN02201 320 SDLSVFYRCAMRGYQDTLYTHTM--RQFYRECRITGTVDFIFGD----------ATAVFQNCQILAKKGLPNQKNTITAQ 387 (520)
T ss_pred CCcEEEEeeeeeccCCeeEeCCC--CEEEEeeEEeecccEEecC----------ceEEEEccEEEEecCCCCCCceEEec
Confidence 46788999999988888877653 3577888888766666653 23567777775421 11223322
Q ss_pred cCC--CCeEEeEEEEeEEEeC
Q 028660 95 QGG--SGYASNIIFQNIDMVN 113 (206)
Q Consensus 95 ~g~--~g~i~nI~~~ni~~~~ 113 (206)
+| ...-..+.|.++++..
T Consensus 388 -~r~~~~~~~Gfvf~~C~it~ 407 (520)
T PLN02201 388 -GRKDPNQPTGFSIQFSNISA 407 (520)
T ss_pred -CCCCCCCCcEEEEEeeEEec
Confidence 22 1223356788888765
Done!