BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028663
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUM1|LOR11_ARATH Protein LURP-one-related 11 OS=Arabidopsis thaliana GN=At3g14260
PE=2 SV=1
Length = 230
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 135/210 (64%), Gaps = 12/210 (5%)
Query: 4 KVHPRGLLSSS---SSAPCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNS 60
K+HP S + +S+P Y ++++E+FTIWMKSLV N GCTVFDS G+I+YRVDNYNS
Sbjct: 25 KIHPDLTTSGAGEETSSP-YLTTEQESFTIWMKSLVFNTNGCTVFDSKGNIIYRVDNYNS 83
Query: 61 KSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYK-STGKVETNTKRPDFLVRQS-FNML 118
KS EVYLMD G VLFT L+++ F LF WEGY+ S+ VE+ TK F V+ + F +
Sbjct: 84 KSCREVYLMDLSGHVLFT-LRRQKFGLFKTWEGYRSSSATVESTTKLEYFRVKNNVFQVP 142
Query: 119 RRNSDCEVIL---GLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGE 175
++S + N+ Y Y M + A I DN G +AE+KRK++ +G+ G+
Sbjct: 143 NKDSSSSYRVNAGSCRNDEQYCYKMVTRGSSLA--IEDNCGKLLAEVKRKQSINGLKLGD 200
Query: 176 DVLSMEVKPCVDLSLVMGLLVVYGLINSLM 205
DVL+M V+ VD S ++GL++ + LIN ++
Sbjct: 201 DVLTMMVESQVDHSFIIGLVLAHSLINCIL 230
>sp|Q9SH27|LOR4_ARATH Protein LURP-one-related 4 OS=Arabidopsis thaliana GN=At1g63410
PE=3 SV=1
Length = 215
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 126/202 (62%), Gaps = 15/202 (7%)
Query: 4 KVHPRGLLSSSSSAPCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSN 63
+V P+ +SS Y S++RETFT+WMKSLV G TV++S+G I YRV+NY+ K +
Sbjct: 3 RVFPQAAISSP-----YMSTERETFTVWMKSLVYQTNGLTVYNSNGEITYRVENYD-KCS 56
Query: 64 NEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGK-VETNTKRPDFLVRQSFNMLRRNS 122
NEV++MD G +LFTI KK+ + LFG W Y+ G T +P +++S R+
Sbjct: 57 NEVHIMDLHGNILFTIRKKKLW-LFGSWYVYRECGSFTSTEEVKPCARIKRS---SIRDG 112
Query: 123 DCEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEV 182
D EV D + + + + K A +I+D G+ +A++K K++ +G+ GEDVL++EV
Sbjct: 113 DWEV---RDETNEV-FWILRFDPKFAFQIIDIHGNIIAQVKPKQSSNGITLGEDVLTLEV 168
Query: 183 KPCVDLSLVMGLLVVYGLINSL 204
KP VD SLV+ L+ VYGLI +
Sbjct: 169 KPRVDHSLVVTLVTVYGLIKGI 190
>sp|Q67XV7|LOR3_ARATH Protein LURP-one-related 3 OS=Arabidopsis thaliana GN=At1g53890
PE=2 SV=2
Length = 217
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 119/188 (63%), Gaps = 18/188 (9%)
Query: 20 YFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKS-NNEVYLMDFDGGVLFT 78
Y ++++E FTIWMKSLV N KGCTVFDS G+++YRVDNY+SKS +NEVY MD +G +LFT
Sbjct: 36 YLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVDNYDSKSWSNEVYFMDLNGKILFT 95
Query: 79 ILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDC--EVILG---LDNN 133
L+++ F WEGY STG F +R+ F +L R S +V++G +D +
Sbjct: 96 -LRQKKLGFFKSWEGYNSTGT--------RFRLRKIFKILPRESSSSYKVVMGSRIVDGD 146
Query: 134 HPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEAR-SGVVFGEDVLSMEVKPCVDLSLVM 192
Y + + A K D G +AE+K K + SG+ G+DVL+M V+P +D SL+M
Sbjct: 147 QQSCYKIVNRGSVFAIK--DGSGRLMAEVKNKLSDISGLDLGDDVLTMMVEPQLDHSLIM 204
Query: 193 GLLVVYGL 200
G+++ Y L
Sbjct: 205 GIVIAYKL 212
>sp|Q8LG32|LOR2_ARATH Protein LURP-one-related 2 OS=Arabidopsis thaliana GN=At1g53870
PE=2 SV=2
Length = 217
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 119/188 (63%), Gaps = 18/188 (9%)
Query: 20 YFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKS-NNEVYLMDFDGGVLFT 78
Y ++++E FTIWMKSLV N KGCTVFDS G+++YRVDNY+SKS +NEVY MD +G +LFT
Sbjct: 36 YLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVDNYDSKSWSNEVYFMDLNGKILFT 95
Query: 79 ILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDC--EVILG---LDNN 133
L+++ F WEGY STG F +R+ F +L R S +V++G +D +
Sbjct: 96 -LRQKKLGFFKSWEGYNSTGT--------RFRLRKIFKILPRESSSSYKVVMGSRIVDGD 146
Query: 134 HPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEAR-SGVVFGEDVLSMEVKPCVDLSLVM 192
Y + + A K D G +AE+K K + SG+ G+DVL+M V+P +D SL+M
Sbjct: 147 QQSCYKIVNRGSVFAIK--DGSGRLMAEVKNKLSDISGLDLGDDVLTMMVEPQLDHSLIM 204
Query: 193 GLLVVYGL 200
G+++ Y L
Sbjct: 205 GIVIAYKL 212
>sp|A0MFL4|LOR17_ARATH Protein LURP-one-related 17 OS=Arabidopsis thaliana GN=At5g41590
PE=2 SV=2
Length = 221
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 104/207 (50%), Gaps = 11/207 (5%)
Query: 2 AKKVH----PRGLLSSSSSAPCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDN 57
++ VH P S+ S A T T+W KSL+++ +G TV DS+G ++YRVDN
Sbjct: 9 SRSVHGEDAPSSTESTVSVAAADIGGACTTLTVWRKSLLVSCEGFTVIDSNGDLIYRVDN 68
Query: 58 YNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTG-KVETNTKR-PDFLVRQSF 115
Y E+ LMD DG L + + + L W Y++ K ET + P + +R++
Sbjct: 69 YARTRPEELILMDKDGNSLLLMHRTKKITLVDSWGIYEANDTKGETKIPKCPTWYMRKNL 128
Query: 116 --NMLRRNSDCEVILGLDNNHPYNYAMTSLNGKC-ACKIVD-NFGDTVAELKRKEARS-G 170
N+L SD + + N + + +C +CKIV TV E+KRKE R+ G
Sbjct: 129 KMNILSTKSDILAYVYSGSFDKKNSYIIKGSYRCKSCKIVHVPLNKTVVEIKRKEVRTKG 188
Query: 171 VVFGEDVLSMEVKPCVDLSLVMGLLVV 197
V FG DV + V P D L M L+++
Sbjct: 189 VRFGSDVFDLVVNPGFDTGLAMALVLL 215
>sp|Q9LVZ8|LOR12_ARATH Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810
PE=2 SV=1
Length = 220
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 11/186 (5%)
Query: 20 YFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNY--NSKSNNEVYLMDFDGGVLF 77
Y + + T+ SL G G +D G I++RVD+Y +++ N+E+ LMD G L
Sbjct: 25 YLYQEDKPLTVCKTSLFYTGDGFAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDATGKCLL 84
Query: 78 TILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDNNHPYN 137
T+ +KR L WEG+ + ++P F VR+S + R + EV G
Sbjct: 85 TVKRKRP-TLHQRWEGFLGE---RSEGQKPIFSVRRSSIIGRCTMEVEVYDGTGEE---- 136
Query: 138 YAMTSLNGKCACKIVDNFGDTVAELKRK-EARSGVVFGEDVLSMEVKPCVDLSLVMGLLV 196
Y + + +C I D TVAE+KRK +A + V+ G DV ++E+KP D + MGL+V
Sbjct: 137 YIIDGDFSQRSCLIYDTKKCTVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGAFAMGLVV 196
Query: 197 VYGLIN 202
V IN
Sbjct: 197 VLDQIN 202
>sp|Q9SSC7|LOR5_ARATH Protein LURP-one-related 5 OS=Arabidopsis thaliana GN=At1g80120
PE=1 SV=1
Length = 210
Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 98/183 (53%), Gaps = 12/183 (6%)
Query: 20 YFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNY---NSKSNNEVYLMDFDGGVL 76
+ + + T+ SL G G TV+D G +++RVD+Y N++ +EV LMD G L
Sbjct: 11 FIHGEERSLTVRKTSLFFAGDGFTVYDCKGSLVFRVDSYGGPNTRDTDEVVLMDAHGRCL 70
Query: 77 FTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDNNHPY 136
T L+++ L WEGY ++ ++P F VR+S +++ RNS + G +
Sbjct: 71 LT-LRRKRPSLRRRWEGYLGE---RSDGQKPIFGVRRS-SIIGRNSVTVEVYG--DYQCS 123
Query: 137 NYAMTSLNGKCACKIVD-NFGDTVAELKRK-EARSGVVFGEDVLSMEVKPCVDLSLVMGL 194
Y + G C +V+ VAE++RK +A + V+ G+DV S+ VKP D + MGL
Sbjct: 124 EYLIEGSFGARNCTVVEAETRRKVAEIRRKVDASTNVMLGKDVFSLNVKPGFDGAFAMGL 183
Query: 195 LVV 197
++V
Sbjct: 184 VLV 186
>sp|Q9ZVI6|LOR8_ARATH Protein LURP-one-related 8 OS=Arabidopsis thaliana GN=At2g38640
PE=2 SV=1
Length = 196
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 14/197 (7%)
Query: 4 KVHPRGLLSSSSSAPCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSN 63
KVHP+ S+ S T+W KSL+ N G TV++++G +++RVDNY +
Sbjct: 3 KVHPK--FPSTCEESLCDSKAAVVLTVWKKSLLFNCDGFTVYNANGELVFRVDNYMNCPR 60
Query: 64 NEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSD 123
+ + LMD G L +I +K+ L W Y G+ E + P F R++ +++ S+
Sbjct: 61 DNIVLMDASGFPLLSIRRKK-LSLGDCWMVY--DGETERD---PIFTARKNVSII---SN 111
Query: 124 CEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGD--TVAELKRKEAR-SGVVFGEDVLSM 180
+ + + Y + G+ +CKI+D + AE+KRKE GV FG+DV +
Sbjct: 112 RKSLAWVSAKKTVLYEIEGSYGQRSCKILDERRNKKKTAEIKRKETVIGGVAFGKDVYKL 171
Query: 181 EVKPCVDLSLVMGLLVV 197
V+ ++ + M L ++
Sbjct: 172 IVESEMEPRVAMALTII 188
>sp|Q9ZUF7|LOR6_ARATH Protein LURP-one-related 6 OS=Arabidopsis thaliana GN=At2g05910
PE=2 SV=1
Length = 191
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 18/188 (9%)
Query: 20 YFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNS-KSNNEVYLMDFDGGVLFT 78
Y SS E + + V+NG G V D I++++D + E+ L D DG L
Sbjct: 9 YCSSMEEVMVVRRRPHVVNGGGFVVTDYKEKIVFKIDGCGVLGTKGELVLRDSDGNDLLL 68
Query: 79 ILKK----RYFRLFGFWEGYKSTGKVETNTKRPDFLVRQS-FNMLRRNSDCEVILGLDNN 133
I KK + + W+GY + +P F +R + S + +G N
Sbjct: 69 IHKKGGVVQALSIHNKWKGYSYD---YQGSPKPVFTLRDPKHSCFSITSSIRISVGPGNC 125
Query: 134 HPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEVKPCVDLSLVMG 193
+ + + C IVD+ G+ +A++K + D+ + KP VD + V G
Sbjct: 126 Y---FDVKGYFPDRDCSIVDSKGNVIAQVKEW------IGSRDIYKVVTKPSVDKAFVFG 176
Query: 194 LLVVYGLI 201
++ V I
Sbjct: 177 VIAVLDYI 184
>sp|A0MFH4|LOR16_ARATH Protein LURP-one-related 16 OS=Arabidopsis thaliana GN=At5g20640
PE=2 SV=2
Length = 215
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 26/214 (12%)
Query: 9 GLLSSSSSAPCY---FSSKRET-FTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNS-KSN 63
G SS + P +SS+ ET + + ++NG G V +S +++RVD +
Sbjct: 2 GARSSQTVDPVLSRRYSSESETVLVVRRRPPMVNGGGFVVSNSKQVVVFRVDGCGVLGTK 61
Query: 64 NEVYLMDFDGGVLFTILK-----KRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNM- 117
++ L + DG L I K + + WEG+ G T+R F ++ +
Sbjct: 62 GKLLLRNGDGNDLLLIRKMGGIVQALNMVHNKWEGF---GYDNEGTERLVFTLKDPKDSC 118
Query: 118 LRRNSDCEVILGLDNNHPYNYAMTSLN--------GKCACKIVDNFGDTVAELK-RKEAR 168
L +NS ++++ + P + T N + AC I+D+ G +A+++ KE
Sbjct: 119 LVQNSSIKILV---HGKPPKISSTRNNYVEIKGSFAERACNIMDSDGKAIAKVRIEKEME 175
Query: 169 SGVVFGEDVLSMEVKPCVDLSLVMGLLVVYGLIN 202
V +D+ + VKP VD S ++GL+ + I+
Sbjct: 176 EMVGNKKDLYHVIVKPNVDQSFIVGLIAILDYIH 209
>sp|Q9LQ36|LOR1_ARATH Protein LURP-one-related 1 OS=Arabidopsis thaliana GN=At1g33840
PE=2 SV=2
Length = 224
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 84/183 (45%), Gaps = 9/183 (4%)
Query: 18 PCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLF 77
P Y S I K L + + +++G+++++V + + + LMD G +
Sbjct: 30 PKYCSLHPVDLAIVRKVLKITDGNFVITNAEGNLLFKVKDPFFSLHEKRILMDGFGTKVL 89
Query: 78 TILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDN--NHP 135
T LK + + W ++ E + + V++S NM++ + +V L DN
Sbjct: 90 T-LKGKIMTMHDRWLVFRGGSTEEVDLL---YTVKRS-NMVQITTKLDVFLA-DNIEQKK 143
Query: 136 YNYAMTSLNGKCACKIVDNFGDTV-AELKRKEARSGVVFGEDVLSMEVKPCVDLSLVMGL 194
+Y + + + +C + D + A+++ K+ V+FG+D + V P VD + + L
Sbjct: 144 CDYRLEGVWLETSCFVYAGDSDIILAQMREKKTMQSVLFGKDNFCLTVNPNVDYAFIASL 203
Query: 195 LVV 197
+V+
Sbjct: 204 IVI 206
>sp|Q97WC6|CBID_SULSO Putative cobalt-precorrin-6A synthase [deacetylating] OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=cbiD PE=3 SV=1
Length = 349
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 78 TILKKRYFRLFGFWEGYKSTGK--VETNTKRPDFL--VRQSFNMLRRNSDCEVILGLDNN 133
TI +K ++ G G G +ET D+L +R N++R++ D VI N
Sbjct: 149 TIAEKTLNKMVGIVGGISILGTTGIETPVSDDDYLEHIRCELNVIRQSYDYVVIA--PGN 206
Query: 134 HPYNYAMTSLNGKCACKIVDNFGDTV 159
YA + C K+ D GD++
Sbjct: 207 SAAKYAAELFDSNCIIKVGDRIGDSI 232
>sp|Q895M3|RIMM_CLOTE Ribosome maturation factor RimM OS=Clostridium tetani (strain
Massachusetts / E88) GN=rimM PE=3 SV=2
Length = 164
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 41 GCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILK 81
GC V D DG+ + +V NN+VY ++ +L +LK
Sbjct: 100 GCKVLDEDGNYLGKVKEVIHTKNNDVYWVEGKKELLIPVLK 140
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,298,536
Number of Sequences: 539616
Number of extensions: 3100853
Number of successful extensions: 6507
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6477
Number of HSP's gapped (non-prelim): 17
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)