Query 028663
Match_columns 205
No_of_seqs 106 out of 434
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 15:02:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04525 Tub_2: Tubby C 2; In 100.0 1.5E-45 3.2E-50 300.7 18.4 175 18-197 6-187 (187)
2 COG4894 Uncharacterized conser 100.0 2.7E-34 5.9E-39 220.8 9.7 153 27-204 7-159 (159)
3 PF03803 Scramblase: Scramblas 99.6 1.1E-13 2.4E-18 115.2 20.0 164 26-202 22-218 (221)
4 COG4894 Uncharacterized conser 98.2 6.5E-06 1.4E-10 64.2 7.8 103 22-129 26-138 (159)
5 PF04525 Tub_2: Tubby C 2; In 97.8 0.00013 2.9E-09 59.3 8.6 87 47-143 10-99 (187)
6 KOG0621 Phospholipid scramblas 97.7 0.00058 1.3E-08 59.5 11.7 149 40-201 99-277 (292)
7 PF03803 Scramblase: Scramblas 96.1 0.046 1E-06 45.2 8.8 66 42-115 78-149 (221)
8 PF02974 Inh: Protease inhibit 73.5 16 0.00034 26.6 6.2 32 63-98 61-92 (99)
9 PF13860 FlgD_ig: FlgD Ig-like 72.0 6.1 0.00013 27.4 3.6 15 42-56 29-43 (81)
10 KOG3950 Gamma/delta sarcoglyca 66.9 6.9 0.00015 33.5 3.4 35 151-185 229-270 (292)
11 PRK12816 flgG flagellar basal 64.7 11 0.00023 32.5 4.3 42 36-78 96-138 (264)
12 PF09008 Head_binding: Head bi 61.3 9.1 0.0002 28.6 2.8 56 20-81 50-105 (114)
13 PRK12640 flgF flagellar basal 58.9 13 0.00029 31.6 3.8 42 36-78 81-123 (246)
14 PRK12691 flgG flagellar basal 58.8 20 0.00043 30.6 4.9 42 36-78 96-138 (262)
15 PRK12818 flgG flagellar basal 57.5 17 0.00037 31.1 4.3 42 36-78 96-138 (256)
16 KOG0621 Phospholipid scramblas 56.6 68 0.0015 28.2 7.9 65 42-114 134-206 (292)
17 PF04790 Sarcoglycan_1: Sarcog 56.5 24 0.00052 30.5 5.0 10 176-185 240-249 (264)
18 PRK12694 flgG flagellar basal 55.9 17 0.00036 31.1 4.0 42 36-78 96-138 (260)
19 TIGR02488 flgG_G_neg flagellar 55.6 16 0.00035 31.2 3.8 42 36-78 94-136 (259)
20 PRK12817 flgG flagellar basal 55.6 19 0.00042 30.7 4.3 42 36-78 92-134 (260)
21 PF15529 Toxin_49: Putative to 52.4 15 0.00032 26.5 2.6 19 40-58 30-48 (89)
22 cd06166 Sortase_D_5 Sortase D 51.6 22 0.00047 26.8 3.6 19 40-58 69-87 (126)
23 TIGR03784 marine_sortase sorta 51.1 23 0.00049 28.6 3.8 20 63-82 112-132 (174)
24 PRK12693 flgG flagellar basal 50.3 27 0.00058 29.8 4.3 42 36-78 96-138 (261)
25 cd05828 Sortase_D_4 Sortase D 49.8 22 0.00047 26.8 3.4 19 63-81 65-83 (127)
26 PRK06655 flgD flagellar basal 44.5 34 0.00074 28.8 4.0 46 35-81 100-145 (225)
27 PRK00122 rimM 16S rRNA-process 44.3 61 0.0013 25.7 5.3 24 69-93 111-135 (172)
28 smart00634 BID_1 Bacterial Ig- 44.2 67 0.0015 22.5 5.0 39 42-80 24-69 (92)
29 PRK12692 flgG flagellar basal 43.1 30 0.00066 29.6 3.6 41 36-77 96-137 (262)
30 PRK15393 NUDIX hydrolase YfcD; 43.0 57 0.0012 26.0 5.0 54 41-95 11-71 (180)
31 TIGR02150 IPP_isom_1 isopenten 42.5 46 0.001 25.8 4.3 52 42-94 1-60 (158)
32 PRK12641 flgF flagellar basal 42.4 35 0.00076 29.1 3.9 40 37-78 80-120 (252)
33 TIGR02273 16S_RimM 16S rRNA pr 41.5 57 0.0012 25.7 4.7 28 67-94 104-131 (165)
34 PRK12643 flgF flagellar basal 41.4 27 0.00058 29.1 2.9 41 36-78 81-122 (209)
35 PF08904 DUF1849: Domain of un 40.4 1.7E+02 0.0037 25.1 7.7 58 21-81 10-72 (252)
36 KOG0291 WD40-repeat-containing 40.4 2.4E+02 0.0052 28.3 9.4 64 32-95 17-92 (893)
37 PRK13828 rimM 16S rRNA-process 40.2 74 0.0016 25.1 5.2 12 70-81 92-103 (161)
38 PRK12690 flgF flagellar basal 38.2 43 0.00093 28.3 3.7 41 36-78 82-123 (238)
39 PF06788 UPF0257: Uncharacteri 37.6 2.6E+02 0.0056 23.8 12.4 41 43-83 52-94 (236)
40 PRK14591 rimM 16S rRNA-process 37.1 80 0.0017 25.1 4.9 25 69-93 111-135 (169)
41 PF12396 DUF3659: Protein of u 36.8 29 0.00064 23.4 2.0 38 43-80 14-57 (64)
42 PRK12813 flgD flagellar basal 36.0 62 0.0013 27.2 4.3 17 64-80 126-142 (223)
43 PF08269 Cache_2: Cache domain 35.7 6.8 0.00015 27.7 -1.4 43 35-77 51-94 (95)
44 PRK14592 rimM 16S rRNA-process 35.0 97 0.0021 24.5 5.1 14 69-82 103-116 (165)
45 COG4786 FlgG Flagellar basal b 34.8 49 0.0011 28.7 3.5 41 37-78 97-138 (265)
46 PF12690 BsuPI: Intracellular 34.7 28 0.00061 24.4 1.7 16 41-56 27-42 (82)
47 PF07680 DoxA: TQO small subun 34.7 43 0.00092 26.0 2.9 32 53-84 36-69 (133)
48 COG4998 Predicted endonuclease 33.9 77 0.0017 25.7 4.2 36 147-188 23-59 (209)
49 PF05593 RHS_repeat: RHS Repea 33.5 89 0.0019 18.2 3.6 31 45-78 1-31 (38)
50 PF01167 Tub: Tub family; Int 33.2 1.8E+02 0.0039 24.7 6.7 73 75-154 8-87 (246)
51 cd05830 Sortase_D_5 Sortase D 33.0 60 0.0013 24.7 3.5 20 63-82 69-88 (137)
52 PRK02939 lipoprotein; Reviewed 31.7 3.3E+02 0.0071 23.2 13.4 39 43-81 52-92 (236)
53 cd00004 Sortase Sortases are c 30.2 77 0.0017 23.5 3.6 21 63-83 68-88 (128)
54 PRK12689 flgF flagellar basal 30.0 75 0.0016 27.1 3.9 41 36-78 88-129 (253)
55 COG4787 FlgF Flagellar basal b 29.5 55 0.0012 27.7 2.9 54 22-77 67-121 (251)
56 PF00384 Molybdopterin: Molybd 29.4 59 0.0013 28.9 3.4 28 175-202 157-185 (432)
57 TIGR03406 FeS_long_SufT probab 29.0 87 0.0019 25.3 3.9 33 23-61 21-53 (174)
58 PRK14091 RNA-binding protein H 28.8 1.1E+02 0.0023 24.6 4.3 38 42-82 27-64 (165)
59 PF01643 Acyl-ACP_TE: Acyl-ACP 28.8 2E+02 0.0043 24.3 6.3 29 139-167 88-117 (261)
60 PRK14590 rimM 16S rRNA-process 28.6 1.5E+02 0.0032 23.6 5.2 11 69-79 123-133 (171)
61 PRK12819 flgG flagellar basal 28.4 86 0.0019 26.7 4.0 38 40-78 99-136 (257)
62 PF09000 Cytotoxic: Cytotoxic; 28.4 1.8E+02 0.004 20.8 5.0 50 28-81 17-68 (85)
63 cd00028 B_lectin Bulb-type man 28.4 2.3E+02 0.005 20.5 6.6 38 40-78 65-102 (116)
64 PRK05842 flgD flagellar basal 28.2 97 0.0021 27.3 4.3 17 64-80 168-184 (295)
65 PF06903 VirK: VirK protein; 28.1 2.5E+02 0.0053 20.7 6.3 34 25-59 46-80 (100)
66 PF06357 Omega-toxin: Omega-at 28.1 51 0.0011 19.5 1.7 11 46-56 27-37 (37)
67 PLN02552 isopentenyl-diphospha 27.7 1.5E+02 0.0032 25.3 5.3 55 40-95 23-90 (247)
68 cd06165 Sortase_A_1 Sortase A 27.2 84 0.0018 23.4 3.4 19 63-81 67-85 (127)
69 cd02769 MopB_DMSOR-BSOR-TMAOR 26.7 42 0.00091 32.1 2.0 25 176-200 226-251 (609)
70 PRK12634 flgD flagellar basal 26.0 1.4E+02 0.0031 24.9 4.9 47 64-111 124-172 (221)
71 PRK13239 alkylmercury lyase; P 25.9 1.2E+02 0.0027 25.2 4.4 31 42-79 62-95 (206)
72 PF11141 DUF2914: Protein of u 25.7 1.1E+02 0.0023 20.5 3.3 21 61-81 43-63 (66)
73 PRK06655 flgD flagellar basal 24.6 2.6E+02 0.0056 23.4 6.1 18 41-58 129-146 (225)
74 PF12098 DUF3574: Protein of u 24.5 63 0.0014 24.0 2.1 32 39-70 35-66 (104)
75 PF13511 DUF4124: Domain of un 24.4 66 0.0014 20.5 2.0 17 40-56 14-30 (60)
76 TIGR00156 conserved hypothetic 24.1 1.2E+02 0.0027 23.2 3.8 22 63-84 72-93 (126)
77 PF04170 NlpE: NlpE N-terminal 24.0 1.4E+02 0.003 20.9 3.8 11 21-31 10-20 (87)
78 PRK12812 flgD flagellar basal 24.0 2.6E+02 0.0056 24.1 6.1 46 36-81 115-160 (259)
79 PF07661 MORN_2: MORN repeat v 23.8 1.1E+02 0.0023 15.0 2.7 16 40-55 3-18 (22)
80 PF14539 DUF4442: Domain of un 23.0 1.2E+02 0.0025 22.9 3.5 19 148-166 112-130 (132)
81 PRK06803 flgE flagellar hook p 22.9 1.3E+02 0.0028 27.6 4.3 40 36-76 76-116 (402)
82 TIGR01076 sortase_fam LPXTG-si 22.6 1.3E+02 0.0028 22.8 3.7 17 63-79 67-83 (136)
83 PF01643 Acyl-ACP_TE: Acyl-ACP 22.6 2.3E+02 0.005 23.8 5.6 39 39-84 95-134 (261)
84 PRK10523 lipoprotein involved 22.4 1.3E+02 0.0029 25.5 4.0 80 21-115 54-139 (234)
85 cd03676 Nudix_hydrolase_3 Memb 22.2 3.2E+02 0.007 21.3 6.1 56 40-95 5-70 (180)
86 TIGR02171 Fb_sc_TIGR02171 Fibr 21.7 8.9E+02 0.019 24.9 10.1 120 48-185 318-442 (912)
87 COG2849 Uncharacterized protei 21.5 2.9E+02 0.0063 23.0 5.9 55 40-95 159-213 (230)
88 PF12142 PPO1_DWL: Polyphenol 21.3 73 0.0016 20.8 1.7 12 41-52 11-22 (54)
89 PF03413 PepSY: Peptidase prop 20.6 1.8E+02 0.004 18.0 3.6 29 48-76 29-61 (64)
90 KOG3503 H/ACA snoRNP complex, 20.4 2.3E+02 0.0049 18.9 3.9 15 104-118 41-55 (64)
91 PF13098 Thioredoxin_2: Thiore 20.2 90 0.002 21.9 2.3 19 41-59 85-103 (112)
No 1
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=100.00 E-value=1.5e-45 Score=300.67 Aligned_cols=175 Identities=30% Similarity=0.458 Sum_probs=108.1
Q ss_pred CcccCCcceEEEEEEEEeEEeCCCeEEEeCCCCEEEEEec-cCCCCCCeEEEEcCCCCeEEEEEecccccccceEEEEee
Q 028663 18 PCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDN-YNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKS 96 (205)
Q Consensus 18 ~~~~~~~~~~l~v~~k~~~~s~d~ftV~D~~G~~vf~V~g-~~~s~~~~~~l~D~~G~~L~~i~~k~~~s~~~~w~v~~~ 96 (205)
++||+++|++|+||+|.+++++|+|+|+|++|+++|+|+| +.+++++++.|+|++|+||++|++|.+ +++++|++|++
T Consensus 6 ~~~~~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k~~-~l~~~w~i~~~ 84 (187)
T PF04525_consen 6 AQYCSPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRRKLF-SLRPTWEIYRG 84 (187)
T ss_dssp GGGB-SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE---------EEEEEET
T ss_pred HHHcCCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEeeec-ccceEEEEEEC
Confidence 6799999999999999999999999999999999999999 899999999999999999999999999 99999999994
Q ss_pred CCcccCCCCCceEEEEeeeeecccCCeeEEEEecC------CCCCceEEEEeeCCCeeEEEEcCCCCEEEEEEeeeeccc
Q 028663 97 TGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLD------NNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSG 170 (205)
Q Consensus 97 dg~~~~~~~~~lf~vkk~~~~~~~k~~~~V~l~~~------~~~~~~~~i~G~~~~~~~~I~~~~g~~VA~v~rk~~~~~ 170 (205)
++ .+.++++|+||+++.+ +.+++..+|+... .+..++|+|+|+|++++|+|++.+|++||||+||+..++
T Consensus 85 ~~---~~~~~~i~tvkk~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~~g~~VA~i~rk~~~k~ 160 (187)
T PF04525_consen 85 GG---SEGKKPIFTVKKKSML-QNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDSGGRVVAEISRKYSSKK 160 (187)
T ss_dssp T------GGGEEEEEE-----------EEEEET--T----------SEEEES-TTTT--EEEECC--EEEEEEE------
T ss_pred CC---CccCceEEEEEEeccc-CCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEEEEcCCCEEEEEecccceee
Confidence 33 3447789999999654 6788889888632 146789999999999999999777899999999988888
Q ss_pred eeeeeceEEEEEeCCCCHHHHHHHHHH
Q 028663 171 VVFGEDVLSMEVKPCVDLSLVMGLLVV 197 (205)
Q Consensus 171 ~~~~~dty~l~V~pgvD~ali~alvv~ 197 (205)
+++|+|+|.|+|+||+|++|++|||||
T Consensus 161 ~~~~~dty~l~V~pg~D~~lv~alvvi 187 (187)
T PF04525_consen 161 WFSGRDTYTLTVAPGVDQALVVALVVI 187 (187)
T ss_dssp ----B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred EEecCcEEEEEEcCCCCHHHheeEEeC
Confidence 999999999999999999999999987
No 2
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.7e-34 Score=220.83 Aligned_cols=153 Identities=20% Similarity=0.243 Sum_probs=138.4
Q ss_pred EEEEEEEEeEEeCCCeEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEEEEecccccccceEEEEeeCCcccCCCCC
Q 028663 27 TFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKR 106 (205)
Q Consensus 27 ~l~v~~k~~~~s~d~ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~~s~~~~w~v~~~dg~~~~~~~~ 106 (205)
+|.+.+|..++ +|+|.|+|.+|+.+|+|+|+++++++.+.|.|++|.+|..|++|++ ++.++|++..++|.
T Consensus 7 tl~mkQk~~~~-gd~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~kll-~l~~~yeI~d~~g~------- 77 (159)
T COG4894 7 TLFMKQKMFSF-GDAFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLL-SLLPRYEISDGGGT------- 77 (159)
T ss_pred hHhhhhhhhhc-ccceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHHHHh-hccceeEEEcCCCC-------
Confidence 56777776666 7999999999999999999999999999999999999999999999 99999999995553
Q ss_pred ceEEEEeeeeecccCCeeEEEEecCCCCCceEEEEeeCCCeeEEEEcCCCCEEEEEEeeeeccceeeeeceEEEEEeCCC
Q 028663 107 PDFLVRQSFNMLRRNSDCEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEVKPCV 186 (205)
Q Consensus 107 ~lf~vkk~~~~~~~k~~~~V~l~~~~~~~~~~~i~G~~~~~~~~I~~~~g~~VA~v~rk~~~~~~~~~~dty~l~V~pgv 186 (205)
.|.|+|+.+|+ ++++++. + .+|+++||+|+.+|++.++ ++++|+|+||| ++|+|||.|+|+|+.
T Consensus 78 -~~~vrKK~tf~--Rdk~e~d--~-----~~~eihGNi~d~efkl~dg-~~~~aeVsKkw-----f~~rdTY~l~vapde 141 (159)
T COG4894 78 -VCEVRKKVTFS--RDKFEID--G-----LNWEIHGNIWDDEFKLTDG-ENVRAEVSKKW-----FSWRDTYHLQVAPDE 141 (159)
T ss_pred -EEEEEEEEEEE--eeeEEEc--C-----CCeEEecceeceEEEEecC-Cceehhheeee-----EeccceEEEEEcCch
Confidence 99999999874 7888864 3 3699999999999999976 57999999998 999999999999999
Q ss_pred CHHHHHHHHHHHhhhhcc
Q 028663 187 DLSLVMGLLVVYGLINSL 204 (205)
Q Consensus 187 D~ali~alvv~lD~i~~~ 204 (205)
|.++|++++|+||++.++
T Consensus 142 ~a~lii~i~VaLD~v~~~ 159 (159)
T COG4894 142 DALLIIAIAVALDMVLYN 159 (159)
T ss_pred hhHHHHHHHHHHHHHhcC
Confidence 999999999999998753
No 3
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=99.62 E-value=1.1e-13 Score=115.25 Aligned_cols=164 Identities=15% Similarity=0.146 Sum_probs=125.1
Q ss_pred eEEEEEEEEeEE---e----CCCeEEEeCCCCEEEEEeccCCC---------CCCeEEEEcCCCCeEEEEEecccccc--
Q 028663 26 ETFTIWMKSLVL---N----GKGCTVFDSDGHIMYRVDNYNSK---------SNNEVYLMDFDGGVLFTILKKRYFRL-- 87 (205)
Q Consensus 26 ~~l~v~~k~~~~---s----~d~ftV~D~~G~~vf~V~g~~~s---------~~~~~~l~D~~G~~L~~i~~k~~~s~-- 87 (205)
-.+.|.++...+ . .+.|.|+|.+|+.+|.+....-. .+-+..++|..|+++++|++..- ..
T Consensus 22 ~~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~-c~~C 100 (221)
T PF03803_consen 22 DQLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFK-CCSC 100 (221)
T ss_pred CEEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCc-ceec
Confidence 356666666432 2 26899999999999988655211 13456889999999999998764 22
Q ss_pred ----cceEEEEeeCCcccCCCCCceEEEEeeeeecccCCeeEEEEecCCCCCceEEEEee------CCCeeEEEEcCCCC
Q 028663 88 ----FGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDNNHPYNYAMTSL------NGKCACKIVDNFGD 157 (205)
Q Consensus 88 ----~~~w~v~~~dg~~~~~~~~~lf~vkk~~~~~~~k~~~~V~l~~~~~~~~~~~i~G~------~~~~~~~I~~~~g~ 157 (205)
..+.+++.++| +++.+|++++.++ +++++|+-+. ...-+.|+|. +.+..|.|++.+|+
T Consensus 101 ~~~~~~~~~V~~p~g-------~~iG~I~q~~~~~--~~~f~I~d~~---~~~~~~I~gp~~~~~~~~~~~F~I~~~~~~ 168 (221)
T PF03803_consen 101 CPCCLQEMEVESPPG-------NLIGSIRQPFSCC--RPNFDIFDAN---GNPIFTIKGPCCCCSCCCDWEFEIKDPNGQ 168 (221)
T ss_pred ccccceeEEEecCCC-------cEEEEEEEcCccc--ceEEEEEECC---CceEEEEeCCcceeccccceeeeeecccCc
Confidence 35666766555 5999999998874 6888887433 2456888887 46788999998889
Q ss_pred EEEEEEeeee--ccceeeeeceEEEEEeCCCCH---HHHHHHHHHHhhhh
Q 028663 158 TVAELKRKEA--RSGVVFGEDVLSMEVKPCVDL---SLVMGLLVVYGLIN 202 (205)
Q Consensus 158 ~VA~v~rk~~--~~~~~~~~dty~l~V~pgvD~---ali~alvv~lD~i~ 202 (205)
.||+|+|+|. ....+...|.|.|+..+..|. |+++|.++.||.+.
T Consensus 169 ~vg~I~k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~~ 218 (221)
T PF03803_consen 169 EVGSITKKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYMY 218 (221)
T ss_pred EEEEEEEecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhhh
Confidence 9999999996 334667899999999998876 79999999999875
No 4
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=6.5e-06 Score=64.17 Aligned_cols=103 Identities=14% Similarity=0.088 Sum_probs=74.8
Q ss_pred CCcceEEEEEEEEeEEeCCCeEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEEEEecccccccceEEEEe----eC
Q 028663 22 SSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYK----ST 97 (205)
Q Consensus 22 ~~~~~~l~v~~k~~~~s~d~ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~~s~~~~w~v~~----~d 97 (205)
...++++.|.=+.++. +|.|+|+|+.|..++.++.+..++..+..|.|++|+ ++.+++|.. .++++|++-. .+
T Consensus 26 ~dgE~af~VeGs~f~i-~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~-~~~vrKK~t-f~Rdk~e~d~~~~eih 102 (159)
T COG4894 26 RDGEEAFKVEGSFFSI-GDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT-VCEVRKKVT-FSRDKFEIDGLNWEIH 102 (159)
T ss_pred CCCcEEEEEeeeEEee-CceEEEEecCCCChHHHHHHHhhccceeEEEcCCCC-EEEEEEEEE-EEeeeEEEcCCCeEEe
Confidence 4457788887655555 788999999999999999999999999999999999 899999987 5588888742 01
Q ss_pred Cc---c---cCCCCCceEEEEeeeeecccCCeeEEEEe
Q 028663 98 GK---V---ETNTKRPDFLVRQSFNMLRRNSDCEVILG 129 (205)
Q Consensus 98 g~---~---~~~~~~~lf~vkk~~~~~~~k~~~~V~l~ 129 (205)
|+ + -...++..++|.|++ |..++.|.+.++
T Consensus 103 GNi~d~efkl~dg~~~~aeVsKkw--f~~rdTY~l~va 138 (159)
T COG4894 103 GNIWDDEFKLTDGENVRAEVSKKW--FSWRDTYHLQVA 138 (159)
T ss_pred cceeceEEEEecCCceehhheeee--EeccceEEEEEc
Confidence 11 0 011334666777665 234566665543
No 5
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=97.79 E-value=0.00013 Score=59.25 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=50.2
Q ss_pred CCCCEEEEEeccCC-CCCCeEEEEcCCCCeEEEEEe-cccccccceEEEEeeCCcccCCCCCceEEEEeeeeecccCCee
Q 028663 47 SDGHIMYRVDNYNS-KSNNEVYLMDFDGGVLFTILK-KRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDC 124 (205)
Q Consensus 47 ~~G~~vf~V~g~~~-s~~~~~~l~D~~G~~L~~i~~-k~~~s~~~~w~v~~~dg~~~~~~~~~lf~vkk~~~~~~~k~~~ 124 (205)
+.....++|.-+.. ..++.+.++|.+|++++++.. +.+ ++.++..++.++| ++|++|+++. ++.+++|
T Consensus 10 ~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~-s~~~~~~l~D~~G-------~~L~~i~~k~--~~l~~~w 79 (187)
T PF04525_consen 10 SPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFF-SIGKKRTLMDASG-------NPLFTIRRKL--FSLRPTW 79 (187)
T ss_dssp -SS-EEEEEE----------EEEEETTS-EEEEEE--SCT-TBTTEEEEE-TTS--------EEEEEE----------EE
T ss_pred CCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEeccc-CCCCEEEEECCCC-------CEEEEEEeee--cccceEE
Confidence 46678888955544 458999999999999999999 888 9999999998666 4999999864 3457999
Q ss_pred EEEEecCC-CCCceEEEEee
Q 028663 125 EVILGLDN-NHPYNYAMTSL 143 (205)
Q Consensus 125 ~V~l~~~~-~~~~~~~i~G~ 143 (205)
+++.++.. ++.+-++|+-.
T Consensus 80 ~i~~~~~~~~~~~i~tvkk~ 99 (187)
T PF04525_consen 80 EIYRGGGSEGKKPIFTVKKK 99 (187)
T ss_dssp EEEETT---GGGEEEEEE--
T ss_pred EEEECCCCccCceEEEEEEe
Confidence 99876542 22345777644
No 6
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=97.72 E-value=0.00058 Score=59.51 Aligned_cols=149 Identities=14% Similarity=0.069 Sum_probs=96.7
Q ss_pred CCeEEEeCCCCEEEEEeccCC---------CCCCeEEEEcCCCCeEEEEEeccccccc--------ceEEEEeeCCcccC
Q 028663 40 KGCTVFDSDGHIMYRVDNYNS---------KSNNEVYLMDFDGGVLFTILKKRYFRLF--------GFWEGYKSTGKVET 102 (205)
Q Consensus 40 d~ftV~D~~G~~vf~V~g~~~---------s~~~~~~l~D~~G~~L~~i~~k~~~s~~--------~~w~v~~~dg~~~~ 102 (205)
+.|.|.|.+|+.+|.+--..- ..+-...++|.-|++++++++... ... ...++..+.+
T Consensus 99 NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~-c~~~~c~~~~~~~~~v~~p~~---- 173 (292)
T KOG0621|consen 99 NRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFP-CCSSACALCLAQEIEIQSPPM---- 173 (292)
T ss_pred cEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEecccc-ccccccccccccEEEEEcCCC----
Confidence 789999999998884432211 124567899999999999999874 322 2222322222
Q ss_pred CCCCceEEEEeeeeecccCCeeEEEEecCCCCCceEEEEee-------CCCeeEE-EEcCCCCEEEEEEeeee--cccee
Q 028663 103 NTKRPDFLVRQSFNMLRRNSDCEVILGLDNNHPYNYAMTSL-------NGKCACK-IVDNFGDTVAELKRKEA--RSGVV 172 (205)
Q Consensus 103 ~~~~~lf~vkk~~~~~~~k~~~~V~l~~~~~~~~~~~i~G~-------~~~~~~~-I~~~~g~~VA~v~rk~~--~~~~~ 172 (205)
-.+-+|.+.+... .++++|- +. +....+.|+|. +.+..+. +...+|++|++|.|+|. ..+.+
T Consensus 174 ---~~lG~v~q~~~~~--~~~f~i~--~~-~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~~rE~f 245 (292)
T KOG0621|consen 174 ---GLLGKVLQTWGCV--NPNFHLW--DR-DGNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGLVREAF 245 (292)
T ss_pred ---ceEEEEEEeeccc--cceEEEE--cc-cceeEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeecccchhhhhe
Confidence 3566666655332 3555543 21 12234666665 3333333 44456899999999996 55677
Q ss_pred eeeceEEEEEeCCCCH---HHHHHHHHHHhhh
Q 028663 173 FGEDVLSMEVKPCVDL---SLVMGLLVVYGLI 201 (205)
Q Consensus 173 ~~~dty~l~V~pgvD~---ali~alvv~lD~i 201 (205)
...|+|.|...-..|. ++++|-++-||.+
T Consensus 246 TDad~f~v~FPldLdvk~kavllga~flID~~ 277 (292)
T KOG0621|consen 246 TDADTFVVHFPLDLDVKLKALLLGSTFLIDYM 277 (292)
T ss_pred eccceeeEecCCcCCHHHHhhhhhheeeEEEE
Confidence 8899999988877776 6788887777754
No 7
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=96.06 E-value=0.046 Score=45.24 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=53.4
Q ss_pred eEEEeCCCCEEEEEeccCCC------CCCeEEEEcCCCCeEEEEEecccccccceEEEEeeCCcccCCCCCceEEEEeee
Q 028663 42 CTVFDSDGHIMYRVDNYNSK------SNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSF 115 (205)
Q Consensus 42 ftV~D~~G~~vf~V~g~~~s------~~~~~~l~D~~G~~L~~i~~k~~~s~~~~w~v~~~dg~~~~~~~~~lf~vkk~~ 115 (205)
..|+|.+|+.|++++-...= ...+..+.++.|++|.+|+++.- .+.++++++.++| +++++|+.+.
T Consensus 78 ~~i~D~~g~~vl~i~Rp~~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~-~~~~~f~I~d~~~-------~~~~~I~gp~ 149 (221)
T PF03803_consen 78 MHIYDNYGREVLTIERPFKCCSCCPCCLQEMEVESPPGNLIGSIRQPFS-CCRPNFDIFDANG-------NPIFTIKGPC 149 (221)
T ss_pred EEEEecCCCEEEEEEcCCcceecccccceeEEEecCCCcEEEEEEEcCc-ccceEEEEEECCC-------ceEEEEeCCc
Confidence 36899999999999976431 13677888999999999999886 6899999999544 4789998775
No 8
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=73.47 E-value=16 Score=26.61 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCCeEEEEEecccccccceEEEEeeCC
Q 028663 63 NNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTG 98 (205)
Q Consensus 63 ~~~~~l~D~~G~~L~~i~~k~~~s~~~~w~v~~~dg 98 (205)
++.+.|+|++|+.|.++.+.-- .+|+....+|
T Consensus 61 gd~l~L~d~~G~~v~~f~~~~~----g~~~g~~~~g 92 (99)
T PF02974_consen 61 GDGLVLTDADGSVVAFFYRSGD----GRFEGQTPDG 92 (99)
T ss_dssp TTEEEEE-TTS-EEEEEEEECT----TEEEEEECCC
T ss_pred CCEEEEECCCCCEEEEEEccCC----eeEEeEcCCC
Confidence 4778999999999999988764 6788888444
No 9
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=71.98 E-value=6.1 Score=27.45 Aligned_cols=15 Identities=27% Similarity=0.753 Sum_probs=7.0
Q ss_pred eEEEeCCCCEEEEEe
Q 028663 42 CTVFDSDGHIMYRVD 56 (205)
Q Consensus 42 ftV~D~~G~~vf~V~ 56 (205)
..|+|++|++|.++.
T Consensus 29 v~I~d~~G~~V~t~~ 43 (81)
T PF13860_consen 29 VTIYDSNGQVVRTIS 43 (81)
T ss_dssp EEEEETTS-EEEEEE
T ss_pred EEEEcCCCCEEEEEE
Confidence 445555555555444
No 10
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=66.87 E-value=6.9 Score=33.49 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=18.0
Q ss_pred EEcCCCCEEEEEEeeee--c-c--ceeeee--ceEEEEEeCC
Q 028663 151 IVDNFGDTVAELKRKEA--R-S--GVVFGE--DVLSMEVKPC 185 (205)
Q Consensus 151 I~~~~g~~VA~v~rk~~--~-~--~~~~~~--dty~l~V~pg 185 (205)
+-..+|++.-+.++-.. + . ..-.+. ..|.|-|.|+
T Consensus 229 ~~s~dGeirLeas~I~lp~L~~g~~~psgS~q~v~eiCvC~n 270 (292)
T KOG3950|consen 229 LESKDGEIRLEASKIRLPKLPTGSYTPSGSRQKVFEICVCPN 270 (292)
T ss_pred EeccCceEEEeeceeecccccCCCCCCCCCcceEEEEEEecC
Confidence 33345666666655331 1 1 111232 3788888876
No 11
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=64.69 E-value=11 Score=32.49 Aligned_cols=42 Identities=24% Similarity=0.368 Sum_probs=33.3
Q ss_pred EEeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 36 VLNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 36 ~~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
.+.|++ |.|.+.+|..+|+=+|.+ .+-..-.|.+++|.+|+.
T Consensus 96 AI~G~GFF~V~~~~G~~~YTR~G~F-~~d~~G~Lvt~~G~~vl~ 138 (264)
T PRK12816 96 AIEGEGFFKILMPDGTYAYTRDGSF-KIDANGQLVTSNGYRLLP 138 (264)
T ss_pred EECCCcEEEEEcCCCCeEEeeCCCe-eECCCCCEECCCCCEecc
Confidence 446766 678788998889988874 566677799999999985
No 12
>PF09008 Head_binding: Head binding; InterPro: IPR009093 This entry represents the N-terminal domain of the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tailspike protein of Salmonella bacteriophage P22 is a viral adhesion protein that mediates attachment of the viral protein to host cell-surface lipopolysaccharide. The tailspike protein displays both receptor binding and destroying properties, inactivating the receptor by endoglycosidase activity. The N-terminal, head-binding domain mediates the non-covalent attachment of the six homotrimeric tailspike molecules to the DNA injection apparatus []. The N-terminal domain of the P22 tailspike protein shows significant sequence similarity to the N-terminal domain of the Shigella phage Sf6 tailspike protein [].; GO: 0009405 pathogenesis; PDB: 2XC1_C 1LKT_D 2VFQ_A 2VFO_A 2VFN_A 2VFP_A 2VKY_B 2VFM_A 2VNL_A 2VBK_A ....
Probab=61.26 E-value=9.1 Score=28.65 Aligned_cols=56 Identities=16% Similarity=0.291 Sum_probs=32.9
Q ss_pred ccCCcceEEEEEEEEeEEeCCCeEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEEEEe
Q 028663 20 YFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILK 81 (205)
Q Consensus 20 ~~~~~~~~l~v~~k~~~~s~d~ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~~ 81 (205)
|..++.-.+..-...+.++.++|.+++.+ .+.-|... ++...++|++|..+|.+-.
T Consensus 50 yl~ne~G~~~~i~QPi~iN~gg~~~y~gq--~a~~vt~~----~hSMAv~d~~g~q~Fy~pn 105 (114)
T PF09008_consen 50 YLENEDGSHVQIAQPIIINKGGFPVYNGQ--IAKFVTVP----GHSMAVYDANGQQQFYFPN 105 (114)
T ss_dssp EEE-TTS-EEEE-SSEEE-TTS-EEETTE--E--EEESS----SEEEEEE-TTS-EEEEESE
T ss_pred EEEcCCCCEeeccCCEEEccCCceEEccc--eeEEEEcc----CceEEEEeCCCcEEEeecc
Confidence 44554445555567788888999998644 66555554 4556999999999998743
No 13
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=58.92 E-value=13 Score=31.61 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=31.3
Q ss_pred EEeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 36 VLNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 36 ~~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
.+.|++ |.|.+.+|+..|+=+|.+ .+-..-.|.+.+|.+|+-
T Consensus 81 AI~G~GFF~V~~~~G~~~yTR~G~F-~~d~~G~Lvt~~G~~vlg 123 (246)
T PRK12640 81 ALQGDGWLAVQAPDGSEAYTRNGSL-QVDANGQLRTANGLPVLG 123 (246)
T ss_pred EECCCcEEEEEcCCCCEEEEeCCCe-eECCCCCEEcCCCCCccC
Confidence 445666 777788898889988874 566666788888888774
No 14
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=58.77 E-value=20 Score=30.64 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=32.7
Q ss_pred EEeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 36 VLNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 36 ~~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
.+.|++ |.|.+.+|..+|+=+|.+ .+-..-.|.+++|.+|+.
T Consensus 96 AI~G~GfF~V~~~~G~~~yTR~G~F-~~d~~G~Lvt~~G~~vl~ 138 (262)
T PRK12691 96 AIQGRGYFQIQLPDGETAYTRAGAF-NRSADGQIVTSDGYPVQP 138 (262)
T ss_pred EEcCCcEEEEEcCCCCEEEeeCCCe-eECCCCCEECCCCCEeEe
Confidence 445766 677778898889988874 566666799999999985
No 15
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=57.53 E-value=17 Score=31.06 Aligned_cols=42 Identities=24% Similarity=0.380 Sum_probs=31.2
Q ss_pred EEeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 36 VLNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 36 ~~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
.+.|++ |.|.+.+|+..|+=+|.+ .+-..-.|.+++|.+|+-
T Consensus 96 AI~G~GFF~V~~~~G~~~YTR~G~F-~~d~~G~Lvt~~G~~vlg 138 (256)
T PRK12818 96 AIQGRGFFTVERNAGNNYYTRDGHF-HVDTQGYLVNDSGYYVLG 138 (256)
T ss_pred EECCCceEEEEcCCCCeEEeeCCCe-eECCCCCEEcCCCCEEec
Confidence 445766 778788898889988874 455555688888888874
No 16
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=56.56 E-value=68 Score=28.17 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=52.8
Q ss_pred eEEEeCCCCEEEEEeccCCC--------CCCeEEEEcCCCCeEEEEEecccccccceEEEEeeCCcccCCCCCceEEEEe
Q 028663 42 CTVFDSDGHIMYRVDNYNSK--------SNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQ 113 (205)
Q Consensus 42 ftV~D~~G~~vf~V~g~~~s--------~~~~~~l~D~~G~~L~~i~~k~~~s~~~~w~v~~~dg~~~~~~~~~lf~vkk 113 (205)
-.|.|..|+.|.+++-.+.- ...+..+..+.|..|-++.+... .+.+.|.+-..++ +.+|.|+.
T Consensus 134 ~~i~D~~g~eVl~~~R~~~c~~~~c~~~~~~~~~v~~p~~~~lG~v~q~~~-~~~~~f~i~~~~~-------~~v~~v~g 205 (292)
T KOG0621|consen 134 MRIMDNFGQEVLTCKRPFPCCSSACALCLAQEIEIQSPPMGLLGKVLQTWG-CVNPNFHLWDRDG-------NLVFLVEG 205 (292)
T ss_pred eEeecccCcEEEEEeccccccccccccccccEEEEEcCCCceEEEEEEeec-cccceEEEEcccc-------eeEEEEEc
Confidence 46899999999999987542 24788999999999999988887 6889999988444 47888888
Q ss_pred e
Q 028663 114 S 114 (205)
Q Consensus 114 ~ 114 (205)
+
T Consensus 206 p 206 (292)
T KOG0621|consen 206 P 206 (292)
T ss_pred C
Confidence 7
No 17
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=56.45 E-value=24 Score=30.47 Aligned_cols=10 Identities=20% Similarity=0.165 Sum_probs=7.1
Q ss_pred ceEEEEEeCC
Q 028663 176 DVLSMEVKPC 185 (205)
Q Consensus 176 dty~l~V~pg 185 (205)
..|.|-|.|.
T Consensus 240 ~~y~lCvC~~ 249 (264)
T PF04790_consen 240 GQYKLCVCPN 249 (264)
T ss_pred ccEEEEECCC
Confidence 3788888754
No 18
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=55.90 E-value=17 Score=31.11 Aligned_cols=42 Identities=29% Similarity=0.379 Sum_probs=32.8
Q ss_pred EEeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 36 VLNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 36 ~~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
.+.|++ |.|.+.+|...|+=+|.+ .+-..-.|.+++|.+|+.
T Consensus 96 AI~G~GfF~V~~~~G~~~yTR~G~F-~~d~~G~Lvt~~G~~Vl~ 138 (260)
T PRK12694 96 AINGQGFFQVLMPDGTTAYTRDGSF-QTNAQGQLVTSSGYPLQP 138 (260)
T ss_pred EEcCCcEEEEEcCCCCeEEeeCCCc-eECCCCCEECCCCCEecc
Confidence 445777 578778998889988874 566666799999999986
No 19
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=55.65 E-value=16 Score=31.16 Aligned_cols=42 Identities=31% Similarity=0.367 Sum_probs=32.4
Q ss_pred EEeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 36 VLNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 36 ~~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
.+.|++ |.|.+.+|..+|+=+|.+ .+-..-.|.+.+|.+|+.
T Consensus 94 AI~G~GfF~V~~~~g~~~yTR~G~F-~~d~~G~Lvt~~G~~Vl~ 136 (259)
T TIGR02488 94 AIEGEGFFQVLMPDGTTAYTRDGAF-KINAEGQLVTSNGYPLQP 136 (259)
T ss_pred EEcCCcEEEEEcCCCCeEEeeCCce-EECCCCCEECCCCCEecC
Confidence 445766 677778898889988874 566666799999999884
No 20
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=55.59 E-value=19 Score=30.72 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=32.0
Q ss_pred EEeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 36 VLNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 36 ~~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
.+.|++ |.|.+.+|..+|+=+|.+ .+-..-.|.+++|.+|+.
T Consensus 92 Ai~G~GfF~V~~~~G~~~yTR~G~F-~~d~~G~Lvt~~G~~vl~ 134 (260)
T PRK12817 92 AIDGEGFFRVIMADGTYAYTRAGNF-NIDSNGMLVDDNGNRLEI 134 (260)
T ss_pred EECCCcEEEEEcCCCCeEEEeCCce-eECCCCCEEcCCCCEEEe
Confidence 345666 778788998889988874 565666688999999885
No 21
>PF15529 Toxin_49: Putative toxin 49
Probab=52.41 E-value=15 Score=26.54 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=15.0
Q ss_pred CCeEEEeCCCCEEEEEecc
Q 028663 40 KGCTVFDSDGHIMYRVDNY 58 (205)
Q Consensus 40 d~ftV~D~~G~~vf~V~g~ 58 (205)
.+|++||++|.++-||++.
T Consensus 30 t~Y~tY~~~G~~~kr~r~~ 48 (89)
T PF15529_consen 30 TSYTTYDEDGMIVKRYRGS 48 (89)
T ss_pred cceeEEcCCCcEeEEeecc
Confidence 6899999999966555554
No 22
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=51.57 E-value=22 Score=26.75 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=9.3
Q ss_pred CCeEEEeCCCCEEEEEecc
Q 028663 40 KGCTVFDSDGHIMYRVDNY 58 (205)
Q Consensus 40 d~ftV~D~~G~~vf~V~g~ 58 (205)
|.+.|.+.++...|+|.+.
T Consensus 69 d~v~v~~~~~~~~Y~V~~~ 87 (126)
T cd06166 69 DEIKVTTKNGTYKYKITSI 87 (126)
T ss_pred CEEEEEECCEEEEEEEEEE
Confidence 4445555544555555443
No 23
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=51.05 E-value=23 Score=28.57 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=10.1
Q ss_pred CCeEEEEcCCCCeE-EEEEec
Q 028663 63 NNEVYLMDFDGGVL-FTILKK 82 (205)
Q Consensus 63 ~~~~~l~D~~G~~L-~~i~~k 82 (205)
++++.|.+.+|+.. +.+...
T Consensus 112 GD~I~v~~~~g~~~~Y~V~~~ 132 (174)
T TIGR03784 112 GDVIRLQTPDGQWQSYQVTAT 132 (174)
T ss_pred CCEEEEEECCCeEEEEEEeEE
Confidence 45555555555542 444443
No 24
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=50.29 E-value=27 Score=29.78 Aligned_cols=42 Identities=29% Similarity=0.333 Sum_probs=32.4
Q ss_pred EEeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 36 VLNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 36 ~~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
.+.|++ |.|.+.+|.+.|+=+|.+ .+-..-.|.+++|.+|+.
T Consensus 96 Ai~G~GfF~v~~~~G~~~yTR~G~F-~~d~~G~Lvt~~G~~vl~ 138 (261)
T PRK12693 96 AIEGQGFFQVQLPDGTIAYTRDGSF-KLDQDGQLVTSGGYPLQP 138 (261)
T ss_pred EECCCcEEEEEcCCCCeEEeeCCCe-eECCCCCEECCCCCEEee
Confidence 446777 567778998889988874 566666799999999985
No 25
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=49.83 E-value=22 Score=26.77 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=8.5
Q ss_pred CCeEEEEcCCCCeEEEEEe
Q 028663 63 NNEVYLMDFDGGVLFTILK 81 (205)
Q Consensus 63 ~~~~~l~D~~G~~L~~i~~ 81 (205)
++++.+.+..+.-.+.+.+
T Consensus 65 Gd~i~v~~~~~~~~Y~V~~ 83 (127)
T cd05828 65 GDIITLQTLGGTYTYRVTS 83 (127)
T ss_pred CCEEEEEECCEEEEEEEee
Confidence 4445555554434444433
No 26
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=44.45 E-value=34 Score=28.75 Aligned_cols=46 Identities=24% Similarity=0.232 Sum_probs=27.0
Q ss_pred eEEeCCCeEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEEEEe
Q 028663 35 LVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILK 81 (205)
Q Consensus 35 ~~~s~d~ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~~ 81 (205)
..+.++.+.+.+ .|..-|+++=..-.-.-.+.|+|++|+.+-++.-
T Consensus 100 V~~~~~~~~~~~-~~~~~~~~~l~~~a~~vti~I~D~~G~~Vrt~~l 145 (225)
T PRK06655 100 VLVPGDTVLVGT-GGTTPFGVELPSAADNVTVTITDSAGQVVRTIDL 145 (225)
T ss_pred EEEecceEEecC-CCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEec
Confidence 344456665533 3455565553222234668888888888877754
No 27
>PRK00122 rimM 16S rRNA-processing protein RimM; Provisional
Probab=44.29 E-value=61 Score=25.73 Aligned_cols=24 Identities=17% Similarity=-0.067 Sum_probs=11.4
Q ss_pred EcCCCCeEEEEEecc-cccccceEEE
Q 028663 69 MDFDGGVLFTILKKR-YFRLFGFWEG 93 (205)
Q Consensus 69 ~D~~G~~L~~i~~k~-~~s~~~~w~v 93 (205)
.|.+|+.|-+|..=. . .-++-|.+
T Consensus 111 ~d~~g~~lG~V~~v~~~-~a~dll~I 135 (172)
T PRK00122 111 VDEDGEELGKVTDILET-GANDVLVV 135 (172)
T ss_pred EeCCCcEEEEEEEEccC-CCceEEEE
Confidence 445555555554432 2 33444555
No 28
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=44.17 E-value=67 Score=22.50 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=19.4
Q ss_pred eEEEeCCCCE------EEEEeccC-CCCCCeEEEEcCCCCeEEEEE
Q 028663 42 CTVFDSDGHI------MYRVDNYN-SKSNNEVYLMDFDGGVLFTIL 80 (205)
Q Consensus 42 ftV~D~~G~~------vf~V~g~~-~s~~~~~~l~D~~G~~L~~i~ 80 (205)
.+|.|++|++ -|.+.|.. ..+...-...|.+|.-++.|+
T Consensus 24 v~v~D~~Gnpv~~~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~ 69 (92)
T smart00634 24 ATVTDANGNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLT 69 (92)
T ss_pred EEEECCCCCCcCCCEEEEEECCCceeeccCCeeeeCCCCEEEEEEE
Confidence 4567777764 35555442 112223334555565555554
No 29
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=43.07 E-value=30 Score=29.61 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=31.3
Q ss_pred EEeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEE
Q 028663 36 VLNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLF 77 (205)
Q Consensus 36 ~~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~ 77 (205)
.+.|++ |.|.+.+|...|+=+|.+ .+...-.|.+++|.+|+
T Consensus 96 AI~G~GFF~V~~~~G~~~yTR~G~F-~~d~~G~Lvt~~G~~Vl 137 (262)
T PRK12692 96 AVNGRGYFQVTSPNGEIQYTRAGSF-NKNAAGQLVTMEGYAVD 137 (262)
T ss_pred EEcCCceEEEECCCCCeEEEeCCCc-eECCCCCEEcCCCCCcc
Confidence 445766 677778898889988874 56566678999999886
No 30
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=43.01 E-value=57 Score=25.99 Aligned_cols=54 Identities=9% Similarity=0.103 Sum_probs=33.1
Q ss_pred CeEEEeCCCCEEEEEec------cCCCCCCeEEEEcCCCCeEEEEEeccc-ccccceEEEEe
Q 028663 41 GCTVFDSDGHIMYRVDN------YNSKSNNEVYLMDFDGGVLFTILKKRY-FRLFGFWEGYK 95 (205)
Q Consensus 41 ~ftV~D~~G~~vf~V~g------~~~s~~~~~~l~D~~G~~L~~i~~k~~-~s~~~~w~v~~ 95 (205)
=+.|+|+||+++-.+.- ......--..++|.+|+.|+. ++... ..+.+.|...-
T Consensus 11 ~~~~~d~~~~~~g~~~~~~~~~~~~~h~~~~v~v~~~~g~iLL~-~R~~~~~~~pg~~~~~p 71 (180)
T PRK15393 11 WVDIVNENNEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQ-RRTETKDFLPGMLDATA 71 (180)
T ss_pred EEEEECCCCCEeeEEEHHHHhhCCCceEEEEEEEECCCCeEEEE-EeCCCCCCCCCcccccC
Confidence 38899999999998721 112233566778999988773 43322 01345565554
No 31
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=42.49 E-value=46 Score=25.82 Aligned_cols=52 Identities=13% Similarity=0.226 Sum_probs=37.0
Q ss_pred eEEEeCCCCEEEEEeccCCCC-------CCeEEEEcCCCCeEEEEEecc-cccccceEEEE
Q 028663 42 CTVFDSDGHIMYRVDNYNSKS-------NNEVYLMDFDGGVLFTILKKR-YFRLFGFWEGY 94 (205)
Q Consensus 42 ftV~D~~G~~vf~V~g~~~s~-------~~~~~l~D~~G~~L~~i~~k~-~~s~~~~w~v~ 94 (205)
+.|+|++|+.+-++.-..... .--..|+|.+|+.|+.-|... . .+.+.|.+-
T Consensus 1 ~~~~d~~~~~~g~~~r~~~~~~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~-~~PG~W~~~ 60 (158)
T TIGR02150 1 VILVDENDNPIGTASKAEVHLQETPLHRAFSVFLFNEEGQLLLQRRALSKI-TWPGVWTNS 60 (158)
T ss_pred CEEECCCCCEeeeeeHHHhhhcCCCeEEEEEEEEEcCCCeEEEEeccCCCc-CCCCCcccc
Confidence 358999999999987765442 234678999999888644432 3 467888854
No 32
>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=42.43 E-value=35 Score=29.07 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=26.1
Q ss_pred EeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 37 LNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 37 ~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
+.|++ |.|.+.+|.+.|+=+|.+ .+-..-.|. ++|.+|+-
T Consensus 80 I~G~GFF~V~~~~G~~~YTR~G~F-~~d~~G~L~-~~G~~Vl~ 120 (252)
T PRK12641 80 IKDNGWLTIKDTNGQEAYTKNGHL-KINSKRKLT-VQNNEVIG 120 (252)
T ss_pred EcCCcEEEEEcCCCCeEEeeCCCe-eECCCCCEE-eCCcEecc
Confidence 34655 778888998889988874 343333344 66777664
No 33
>TIGR02273 16S_RimM 16S rRNA processing protein RimM. This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide.
Probab=41.51 E-value=57 Score=25.70 Aligned_cols=28 Identities=7% Similarity=-0.159 Sum_probs=15.1
Q ss_pred EEEcCCCCeEEEEEecccccccceEEEE
Q 028663 67 YLMDFDGGVLFTILKKRYFRLFGFWEGY 94 (205)
Q Consensus 67 ~l~D~~G~~L~~i~~k~~~s~~~~w~v~ 94 (205)
.++|.+|+.|-+|..=.-...++-|.+-
T Consensus 104 ~V~d~~~~~lG~V~~v~~~~a~dll~V~ 131 (165)
T TIGR02273 104 EVVTEEGEELGKVVEILETGANDVLVVR 131 (165)
T ss_pred EEEcCCCcEEEEEEEEecCCCccEEEEE
Confidence 4555666666666554321345555554
No 34
>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=41.41 E-value=27 Score=29.11 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=26.8
Q ss_pred EEeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 36 VLNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 36 ~~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
.+.|++ |.|.+.+|+..|+=+|.+ .+..+-.| +.+|.+|+.
T Consensus 81 AI~G~GFF~V~~~~G~~~YTR~G~F-~~d~~G~L-t~~G~~Vlg 122 (209)
T PRK12643 81 ALQQDGYLAVQLPDGSEAYTRNGNI-QISANGQM-TVQGYPLMG 122 (209)
T ss_pred EECCCcEEEEEcCCCCeEEeeCCCc-eECCCCCC-cCCCcCccc
Confidence 345666 677777887888877774 44444445 777777663
No 35
>PF08904 DUF1849: Domain of unknown function (DUF1849); InterPro: IPR015000 This group of proteins are functionally uncharacterised.
Probab=40.43 E-value=1.7e+02 Score=25.07 Aligned_cols=58 Identities=17% Similarity=0.330 Sum_probs=39.6
Q ss_pred cCCcceEEEEEEEEeEEeCCCeEEEeCCCCEEEEEeccCCCC-----CCeEEEEcCCCCeEEEEEe
Q 028663 21 FSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKS-----NNEVYLMDFDGGVLFTILK 81 (205)
Q Consensus 21 ~~~~~~~l~v~~k~~~~s~d~ftV~D~~G~~vf~V~g~~~s~-----~~~~~l~D~~G~~L~~i~~ 81 (205)
..+|...|-+. +.=+.++=.|.+..|+.+|.+.|..+.. +--..+.+.+|.+.++=.+
T Consensus 10 l~pHRAvYdl~---L~~~~~~s~i~~~~GRm~ye~~G~aC~Gyt~~~R~v~~~~~~eg~~~~td~~ 72 (252)
T PF08904_consen 10 LAPHRAVYDLS---LDKSSGGSGIVGASGRMVYEFSGSACDGYTTNFRFVTRFQDTEGGVRLTDQQ 72 (252)
T ss_pred cccceeEEEEE---ecccCCCCCcccceEEEEEEEccCCCCCeEEEEEEEEEEEecCCCeEEEEee
Confidence 56777777654 2223456678999999999999887643 3444555778888776433
No 36
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=40.40 E-value=2.4e+02 Score=28.27 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=42.7
Q ss_pred EEEeEEeCCCeEEEeCCCCEEEEEeccCCC---C----C--CeEEEEcCCCCeEEEEEec---ccccccceEEEEe
Q 028663 32 MKSLVLNGKGCTVFDSDGHIMYRVDNYNSK---S----N--NEVYLMDFDGGVLFTILKK---RYFRLFGFWEGYK 95 (205)
Q Consensus 32 ~k~~~~s~d~ftV~D~~G~~vf~V~g~~~s---~----~--~~~~l~D~~G~~L~~i~~k---~~~s~~~~w~v~~ 95 (205)
...+.|++|++.|.-.-||-|..++.+.-. + + =+..-..++|..|+.+.++ ++.++..+..+|+
T Consensus 17 ~Gnl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~ 92 (893)
T KOG0291|consen 17 AGNLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHR 92 (893)
T ss_pred cCcEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEE
Confidence 445899999999999999999999988621 1 1 2233345677777777666 2215556655543
No 37
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=40.20 E-value=74 Score=25.07 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=5.4
Q ss_pred cCCCCeEEEEEe
Q 028663 70 DFDGGVLFTILK 81 (205)
Q Consensus 70 D~~G~~L~~i~~ 81 (205)
|.+|+.|-+|..
T Consensus 92 d~~g~~lG~V~~ 103 (161)
T PRK13828 92 DTGGALLGRVKA 103 (161)
T ss_pred eCCCCEEEEEEE
Confidence 444444444443
No 38
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=38.20 E-value=43 Score=28.32 Aligned_cols=41 Identities=27% Similarity=0.326 Sum_probs=28.5
Q ss_pred EEeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 36 VLNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 36 ~~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
.+.|++ |.|.+.+|. .|+=+|. |.+-..-.|.+++|.+|+-
T Consensus 82 AI~G~GFF~V~~~~G~-~yTR~G~-F~~d~~G~Lvt~~G~~vlg 123 (238)
T PRK12690 82 AIEGEGFFMVETPQGE-RLTRAGS-FTPNAEGELVDPDGNRLLD 123 (238)
T ss_pred EECCCcEEEEEcCCCC-EEeeCCC-eEECCCCCEEcCCCCEeEC
Confidence 445666 678788884 5887776 3555556688888888874
No 39
>PF06788 UPF0257: Uncharacterised protein family (UPF0257); InterPro: IPR010646 This is a group of proteins of unknown function.; GO: 0005886 plasma membrane
Probab=37.59 E-value=2.6e+02 Score=23.82 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=31.7
Q ss_pred EEEeCCCCEEEEEeccCCC--CCCeEEEEcCCCCeEEEEEecc
Q 028663 43 TVFDSDGHIMYRVDNYNSK--SNNEVYLMDFDGGVLFTILKKR 83 (205)
Q Consensus 43 tV~D~~G~~vf~V~g~~~s--~~~~~~l~D~~G~~L~~i~~k~ 83 (205)
+++|++|.+.++|.+.+.. .=..+.+.|..-+.-+.|.++.
T Consensus 52 t~~de~g~v~~~v~~~l~~eGCfd~l~~~~~~~n~~~~Lv~d~ 94 (236)
T PF06788_consen 52 TLYDEDGEVTKRVSLTLSREGCFDTLELYDKENNTHLALVRDA 94 (236)
T ss_pred EEEcCCCcEEEEEEEEECCccceeeeeecccccccceEEEEec
Confidence 6899999999999999643 3478888888767666665543
No 40
>PRK14591 rimM 16S rRNA-processing protein RimM; Provisional
Probab=37.14 E-value=80 Score=25.10 Aligned_cols=25 Identities=0% Similarity=-0.187 Sum_probs=11.0
Q ss_pred EcCCCCeEEEEEecccccccceEEE
Q 028663 69 MDFDGGVLFTILKKRYFRLFGFWEG 93 (205)
Q Consensus 69 ~D~~G~~L~~i~~k~~~s~~~~w~v 93 (205)
.|.+|++|-+|..=.-...++-|.+
T Consensus 111 ~d~~g~~lG~V~~v~~~ga~dll~I 135 (169)
T PRK14591 111 KNINNDSFGVVVDIIETGANEVLVC 135 (169)
T ss_pred EeCCCCEEEEEEEEeecCCceEEEE
Confidence 4455555555544331023444444
No 41
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=36.84 E-value=29 Score=23.37 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=25.9
Q ss_pred EEEeCCCCEEEE-EeccCCC-----CCCeEEEEcCCCCeEEEEE
Q 028663 43 TVFDSDGHIMYR-VDNYNSK-----SNNEVYLMDFDGGVLFTIL 80 (205)
Q Consensus 43 tV~D~~G~~vf~-V~g~~~s-----~~~~~~l~D~~G~~L~~i~ 80 (205)
.|.|.+|+++-+ |+|.... +-.+=.|.|.+|+.|-+..
T Consensus 14 ~V~d~~G~~vG~vveGd~k~L~G~~vd~~G~I~d~~G~viGkae 57 (64)
T PF12396_consen 14 NVVDDDGNVVGRVVEGDPKKLVGKKVDEDGDILDKDGNVIGKAE 57 (64)
T ss_pred eEECCCCCEEEEEecCCHHHhcCCcCCCCCCEECCCCCEEEEEE
Confidence 377999999999 5554322 2345567888888877654
No 42
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=36.05 E-value=62 Score=27.23 Aligned_cols=17 Identities=18% Similarity=0.133 Sum_probs=10.1
Q ss_pred CeEEEEcCCCCeEEEEE
Q 028663 64 NEVYLMDFDGGVLFTIL 80 (205)
Q Consensus 64 ~~~~l~D~~G~~L~~i~ 80 (205)
-.+.|+|++|+.+-++.
T Consensus 126 v~v~I~D~~G~vV~t~~ 142 (223)
T PRK12813 126 AELVVRDAAGAEVARET 142 (223)
T ss_pred EEEEEEcCCCCEEEEEe
Confidence 35566666666665553
No 43
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=35.72 E-value=6.8 Score=27.72 Aligned_cols=43 Identities=28% Similarity=0.397 Sum_probs=21.5
Q ss_pred eEEeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEE
Q 028663 35 LVLNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLF 77 (205)
Q Consensus 35 ~~~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~ 77 (205)
+.|.+++ |-|+|.+|..+..-....+-+.+-..+.|++|.+++
T Consensus 51 ~r~~~~gY~fi~d~~g~~l~hp~~p~~~G~n~~~~~D~~G~~~i 94 (95)
T PF08269_consen 51 LRYGGDGYFFIYDMDGVVLAHPSNPELEGKNLSDLKDPNGKYLI 94 (95)
T ss_dssp --SBTTB--EEE-TTSBEEEESS-GGGTT-B-TT-B-TT--BHH
T ss_pred cccCCCCeEEEEeCCCeEEEcCCCcccCCcccccCCCCCCCEEe
Confidence 4454444 789999998877654333445566678899998764
No 44
>PRK14592 rimM 16S rRNA-processing protein RimM; Provisional
Probab=34.95 E-value=97 Score=24.47 Aligned_cols=14 Identities=21% Similarity=-0.147 Sum_probs=6.7
Q ss_pred EcCCCCeEEEEEec
Q 028663 69 MDFDGGVLFTILKK 82 (205)
Q Consensus 69 ~D~~G~~L~~i~~k 82 (205)
.|.+|+.|-+|..=
T Consensus 103 ~~~~g~~lG~V~~v 116 (165)
T PRK14592 103 KLEDNTIYGYIKKI 116 (165)
T ss_pred EcCCCCEEEEEEEE
Confidence 44445555554443
No 45
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion]
Probab=34.83 E-value=49 Score=28.67 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=31.5
Q ss_pred EeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 37 LNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 37 ~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
+.|++ |.|...+|+..|+=+|.+ ++-.+-.|...+|-+|+-
T Consensus 97 I~g~gfF~I~~~dG~~~YTR~G~F-~~d~~G~LVT~~G~~vl~ 138 (265)
T COG4786 97 ITGDGFFQIQTPDGTIAYTRDGSF-TVDEEGQLVTSNGYPVLD 138 (265)
T ss_pred EcCCceEEEEcCCCCEEEeeCCce-eECCCCCEEeCCCCCccC
Confidence 34555 778779999999999984 667777777777777776
No 46
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=34.67 E-value=28 Score=24.40 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=10.0
Q ss_pred CeEEEeCCCCEEEEEe
Q 028663 41 GCTVFDSDGHIMYRVD 56 (205)
Q Consensus 41 ~ftV~D~~G~~vf~V~ 56 (205)
+|.|+|.+|+.||+-.
T Consensus 27 D~~v~d~~g~~vwrwS 42 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRWS 42 (82)
T ss_dssp EEEEE-TT--EEEETT
T ss_pred EEEEECCCCCEEEEec
Confidence 5788888999888743
No 47
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=34.65 E-value=43 Score=25.98 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=23.6
Q ss_pred EEEeccCC--CCCCeEEEEcCCCCeEEEEEeccc
Q 028663 53 YRVDNYNS--KSNNEVYLMDFDGGVLFTILKKRY 84 (205)
Q Consensus 53 f~V~g~~~--s~~~~~~l~D~~G~~L~~i~~k~~ 84 (205)
||++|... ++--...|+|.+|+.+++-..+.+
T Consensus 36 yr~~G~D~Ygsfl~~i~l~d~~g~vv~~~~~~~L 69 (133)
T PF07680_consen 36 YRVEGPDVYGSFLIGIQLKDSTGHVVLNWDQEKL 69 (133)
T ss_pred EEcCCCccCCceeeEEEEECCCCCEEEEeCHHHh
Confidence 34444433 445778999999999999988766
No 48
>COG4998 Predicted endonuclease (RecB family) [DNA replication, recombination, and repair]
Probab=33.86 E-value=77 Score=25.71 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=26.6
Q ss_pred eeEEEEcCCCCEEEEEEeeeeccceeeeeceEEEEEeCCC-CH
Q 028663 147 CACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEVKPCV-DL 188 (205)
Q Consensus 147 ~~~~I~~~~g~~VA~v~rk~~~~~~~~~~dty~l~V~pgv-D~ 188 (205)
+++.|+++ |..|+||.--- -.+..+|.++|..|. |.
T Consensus 23 rn~~ve~e-gveVgEiDIVA-----ek~GerYavEVKAG~vdi 59 (209)
T COG4998 23 RNMPVEDE-GVEVGEIDIVA-----EKGGERYAVEVKAGMVDI 59 (209)
T ss_pred ecceeecC-CeEEEEEEEEE-----ecCCcEEEEEEeccccch
Confidence 45667765 78899997642 346889999999884 54
No 49
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=33.45 E-value=89 Score=18.20 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=17.4
Q ss_pred EeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 45 FDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 45 ~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
||++|+++=.++.. ......-+|+.|+++-.
T Consensus 1 YD~~G~l~~~~d~~---G~~~~y~YD~~g~l~~~ 31 (38)
T PF05593_consen 1 YDANGRLTSVTDPD---GRTTRYTYDAAGRLTSV 31 (38)
T ss_pred CCCCCCEEEEEcCC---CCEEEEEECCCCCEEEE
Confidence 46677776666432 23334666777765443
No 50
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=33.22 E-value=1.8e+02 Score=24.68 Aligned_cols=73 Identities=19% Similarity=0.148 Sum_probs=40.9
Q ss_pred eEEEEEecc--c-ccccceEEEEeeCCcccCCCCCceEEEEeeeeecccCCeeEEEEecC--C--CCCceEEEEeeCCCe
Q 028663 75 VLFTILKKR--Y-FRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLD--N--NHPYNYAMTSLNGKC 147 (205)
Q Consensus 75 ~L~~i~~k~--~-~s~~~~w~v~~~dg~~~~~~~~~lf~vkk~~~~~~~k~~~~V~l~~~--~--~~~~~~~i~G~~~~~ 147 (205)
.-+.|++.. + ..+.+.|..|.. + +.++.|...||... .....|-|++... + +...-=+|+.||++.
T Consensus 8 vqC~I~R~k~g~~~~lyp~y~l~l~-~----~~~kfLLaArK~~~--s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT 80 (246)
T PF01167_consen 8 VQCFIRRDKSGLTRGLYPGYYLYLE-G----ENGKFLLAARKRKR--SKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT 80 (246)
T ss_dssp EEEEEEEESTTCCCT---EEEEEEE-S----TTSEEEEEEEEECS--SSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred EEEEEEEECCCCCcccCcEeEeccc-c----CCCcEEEeeeeccc--CCCcceEEecCCCccccCCCceeeeecccccee
Confidence 345665542 1 136788888872 1 23477888877642 2245777776532 1 222334668899999
Q ss_pred eEEEEcC
Q 028663 148 ACKIVDN 154 (205)
Q Consensus 148 ~~~I~~~ 154 (205)
+|+|||.
T Consensus 81 ~F~iyD~ 87 (246)
T PF01167_consen 81 EFTIYDN 87 (246)
T ss_dssp EEEEEES
T ss_pred EEEEECC
Confidence 9999985
No 51
>cd05830 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5 represented by Streptomyces avermitilis SAV4337. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=32.99 E-value=60 Score=24.70 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=9.4
Q ss_pred CCeEEEEcCCCCeEEEEEec
Q 028663 63 NNEVYLMDFDGGVLFTILKK 82 (205)
Q Consensus 63 ~~~~~l~D~~G~~L~~i~~k 82 (205)
++++.+.|..|.--+++...
T Consensus 69 Gd~i~v~~~~~~~~Y~V~~~ 88 (137)
T cd05830 69 GDKIVVETADGWYTYVVRSS 88 (137)
T ss_pred CCEEEEEECCeEEEEEEeEE
Confidence 45555555544444444333
No 52
>PRK02939 lipoprotein; Reviewed
Probab=31.70 E-value=3.3e+02 Score=23.24 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=28.9
Q ss_pred EEEeCCCCEEEEEeccCCC--CCCeEEEEcCCCCeEEEEEe
Q 028663 43 TVFDSDGHIMYRVDNYNSK--SNNEVYLMDFDGGVLFTILK 81 (205)
Q Consensus 43 tV~D~~G~~vf~V~g~~~s--~~~~~~l~D~~G~~L~~i~~ 81 (205)
+++|++|.+.++|.+.+.. .-..+.+.|..-+.-+.+.+
T Consensus 52 t~~ne~g~v~~~v~~~~~~eGCfdtl~~~~~~~n~~l~lvr 92 (236)
T PRK02939 52 TLMDEQGEVTKRVSGTLSEEGCFDTLELLDLENNTGLALVL 92 (236)
T ss_pred EEEcCCCcEEEEEEEEEcCCCceeeeEecccccccceEEEE
Confidence 6899999999999999643 23788899976554444433
No 53
>cd00004 Sortase Sortases are cysteine transpeptidases, found in gram-positive bacteria, that anchor surface proteins to peptidoglycans of the bacterial cell wall envelope. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The different classes are called Sortase A or SrtA (subfamily 1), B or SrtB (subfamily 2), C or SrtC (subfamily3), D or SrtD (subfamilies 4 and 5), and E or SrtE. In two different sortase subfamilies, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one s
Probab=30.15 E-value=77 Score=23.54 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=13.0
Q ss_pred CCeEEEEcCCCCeEEEEEecc
Q 028663 63 NNEVYLMDFDGGVLFTILKKR 83 (205)
Q Consensus 63 ~~~~~l~D~~G~~L~~i~~k~ 83 (205)
++++.|.+..+.-.+++....
T Consensus 68 Gd~v~v~~~~~~~~Y~V~~~~ 88 (128)
T cd00004 68 GDKIYLTDGGKTYVYKVTSIL 88 (128)
T ss_pred CCEEEEEECCEEEEEEEEEEE
Confidence 566777777666666665543
No 54
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=30.01 E-value=75 Score=27.08 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=27.7
Q ss_pred EEeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 36 VLNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 36 ~~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
.+.|++ |.|.+.+| ..|+=+|.+ .+-..-.|.+++|.+|+-
T Consensus 88 AI~G~GFF~V~~~~G-~~yTR~G~F-~~d~~G~Lvt~~G~~vlg 129 (253)
T PRK12689 88 AIDGDAFLAVQTPQG-ERYTRDGAL-EINAQGQLVTSDGYPVLG 129 (253)
T ss_pred EECCCcEEEEEeCCC-cEEEeCCce-EECCCCCEEcCCCCEeec
Confidence 445666 56766777 458877764 455555688888888874
No 55
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=29.50 E-value=55 Score=27.69 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=32.9
Q ss_pred CCcceEEEEEEEEeEEeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEE
Q 028663 22 SSKRETFTIWMKSLVLNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLF 77 (205)
Q Consensus 22 ~~~~~~l~v~~k~~~~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~ 77 (205)
++.+..+|=+.--..+.+|+ ++|.|.+|...|+=.|.+ .+.... ++--+|.|++
T Consensus 67 spG~l~~TgR~LDvaiq~DGwlaVq~~dG~EaYTRnG~~-qI~a~g-~lTiqg~pVi 121 (251)
T COG4787 67 SPGSLDYTGRPLDVAIQGDGWLAVQDADGSEAYTRNGNI-QIDATG-QLTIQGHPVI 121 (251)
T ss_pred CCccccccCCcceEEEccCceEEEEcCCCcchheecCce-EECccc-ceecCCCeee
Confidence 34455555544444566777 689999999999988874 332222 4444455443
No 56
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=29.38 E-value=59 Score=28.93 Aligned_cols=28 Identities=14% Similarity=0.174 Sum_probs=21.5
Q ss_pred eceEEEEEeCCCCHHHHHHHH-HHHhhhh
Q 028663 175 EDVLSMEVKPCVDLSLVMGLL-VVYGLIN 202 (205)
Q Consensus 175 ~dty~l~V~pgvD~ali~alv-v~lD~i~ 202 (205)
.-.+.|.|.||.|.+|++|++ .++++..
T Consensus 157 ~ad~~i~i~PGtD~al~~a~~~~ii~~~~ 185 (432)
T PF00384_consen 157 KADEWIPIRPGTDAALALAMAHVIIDEGL 185 (432)
T ss_dssp GTSEEEEE-TTTHHHHHHHHHHHHHHTTT
T ss_pred hccccccccccccHHhhcccccceeeccc
Confidence 456779999999999999988 6666543
No 57
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=28.96 E-value=87 Score=25.27 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=22.9
Q ss_pred CcceEEEEEEEEeEEeCCCeEEEeCCCCEEEEEeccCCC
Q 028663 23 SKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSK 61 (205)
Q Consensus 23 ~~~~~l~v~~k~~~~s~d~ftV~D~~G~~vf~V~g~~~s 61 (205)
+.-...+|.+- + |++||| -.+|| .||++|+...
T Consensus 21 ~~~~~~~~~q~---l-gg~~t~-~~~g~-~~r~~~~~~d 53 (174)
T TIGR03406 21 PAGTEVTITQA---L-GGNFTV-VVEGN-MARIDGKDAD 53 (174)
T ss_pred CCCCEEEEEEc---c-CCeEEE-EEcCe-EEEecCcChh
Confidence 33445556552 2 889999 55688 8999999753
No 58
>PRK14091 RNA-binding protein Hfq; Provisional
Probab=28.82 E-value=1.1e+02 Score=24.65 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=23.8
Q ss_pred eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEEEEec
Q 028663 42 CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKK 82 (205)
Q Consensus 42 ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~~k 82 (205)
-+|+=.|| +++.|...++-+-..|++.+|+.-+-=++-
T Consensus 27 VtvfL~nG---~rl~G~I~~fD~ftVlL~~~gkqqLIYKHA 64 (165)
T PRK14091 27 VTMFLVKG---VKLQGIITWFDNFSILLRRDGQSQLVYKHA 64 (165)
T ss_pred EEEEEecC---cEEEEEEEEEcceEEEEEeCCceEEEEeee
Confidence 45555666 666777666666677777777665443443
No 59
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=28.76 E-value=2e+02 Score=24.27 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=22.1
Q ss_pred EEEeeCCCeeEEEEc-CCCCEEEEEEeeee
Q 028663 139 AMTSLNGKCACKIVD-NFGDTVAELKRKEA 167 (205)
Q Consensus 139 ~i~G~~~~~~~~I~~-~~g~~VA~v~rk~~ 167 (205)
..++-|.-|+|.|++ .+|+++|+.+-.|.
T Consensus 88 ~~~~~~~~R~f~i~d~~~G~~l~~a~s~Wv 117 (261)
T PF01643_consen 88 GFKRFFAYRDFEIYDAEDGELLARATSIWV 117 (261)
T ss_dssp EE-SSEEEEEEEEE--TTS-EEEEEEEEEE
T ss_pred cCCCcEEEEEEEEEECCCCcEEEEEEEEEE
Confidence 346778899999999 78999999998883
No 60
>PRK14590 rimM 16S rRNA-processing protein RimM; Provisional
Probab=28.60 E-value=1.5e+02 Score=23.65 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=4.5
Q ss_pred EcCCCCeEEEE
Q 028663 69 MDFDGGVLFTI 79 (205)
Q Consensus 69 ~D~~G~~L~~i 79 (205)
++...|.|+.|
T Consensus 123 ~~~~a~dllvV 133 (171)
T PRK14590 123 QDNPAHPILVF 133 (171)
T ss_pred ecCCCceEEEE
Confidence 33334444444
No 61
>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=28.42 E-value=86 Score=26.69 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=28.1
Q ss_pred CCeEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 40 KGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 40 d~ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
++|-+...+|...|+=+|.+ .+-..-.|.+++|.+|+-
T Consensus 99 ~gFf~v~~~G~~~yTR~G~F-~~d~~G~Lvt~~G~~vlg 136 (257)
T PRK12819 99 SSFFVTSKNGETFLTRDGSF-TLNSDRYLQTASGAFVMG 136 (257)
T ss_pred CEEEEEcCCCCeeEeeCCCe-eECCCCCEEcCCCCEEec
Confidence 56666677888889988874 555666688888888774
No 62
>PF09000 Cytotoxic: Cytotoxic; InterPro: IPR009105 Colicins are plasmid-encoded protein antibiotics, or bacteriocins, produced by strains of Escherichia coli that kill closely related bacteria. Colicins are classified according to the cell-surface receptor they bind to, colicin E3 binding to the BtuB receptor involved in vitamin B12 uptake. The lethal action of colicin E3 arises from its ability to inactivate the ribosome by site-specific RNase cleavage of the 16S ribosomal RNA, which is carried out by the catalytic, or ribonuclease domain. Colicin E3 is comprised of three domains, each domain being involved in a different stage of infection: receptor binding, translocation and cytotoxicity. Colicin E3 is a Y-shaped molecule with the receptor-binding middle domain forming the stalk, the N-terminal translocation domain forming the two globular heads (IPR003058 from INTERPRO), and the C-terminal catalytic domain forming the two globular arms. To neutralise the toxic effects of colicin E3, the host cell produces an immunity protein, which binds to the C-terminal end of the ribonuclease domain and effectively suppresses its activity. This entry represents the ribonuclease domain (also called catalytic or cytotoxic domain) found in various colicins. This domain confers cytotoxic activity to proteins, enabling the formation of nucleolytic breaks in 16S ribosomal RNA. The structure of the domain reveals a highly twisted central beta-sheet elaborated with a short N-terminal alpha-helix [, ]. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0043022 ribosome binding, 0009405 pathogenesis; PDB: 2B5U_C 1JCH_A 1E44_B 2XFZ_Y.
Probab=28.38 E-value=1.8e+02 Score=20.77 Aligned_cols=50 Identities=22% Similarity=0.158 Sum_probs=30.6
Q ss_pred EEEEEEEeEEeCCC--eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEEEEe
Q 028663 28 FTIWMKSLVLNGKG--CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILK 81 (205)
Q Consensus 28 l~v~~k~~~~s~d~--ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~~ 81 (205)
-..+.|.....+.+ -.=+|..|+-+|.-|.. +.++.++|..|+.|-.+-.
T Consensus 17 ~~~k~ktp~~gg~~~r~rw~~~kG~kiYewDsq----HG~lEvy~~~GkHLGe~Dp 68 (85)
T PF09000_consen 17 KKAKPKTPVQGGGGKRKRWKDKKGRKIYEWDSQ----HGELEVYNKRGKHLGEFDP 68 (85)
T ss_dssp EEE---SB-SSSSSB--EEEETTTTEEEEEETT----TTEEEEEETT-BEEEEE-T
T ss_pred hhccccCccccCCccccceEcCCCCEEEEEcCC----CCeEEEEcCCCcCcccccC
Confidence 34445555554421 23378899999988875 6789999999988877644
No 63
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=28.38 E-value=2.3e+02 Score=20.48 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=17.6
Q ss_pred CCeEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 40 KGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 40 d~ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
+.+.++|.+|.++-.=.... .....+..+..+||.++.
T Consensus 65 GnLvl~~~~g~~vW~S~~~~-~~~~~~~~L~ddGnlvl~ 102 (116)
T cd00028 65 GNLVIYDGSGTVVWSSNTTR-VNGNYVLVLLDDGNLVLY 102 (116)
T ss_pred CCeEEEcCCCcEEEEecccC-CCCceEEEEeCCCCEEEE
Confidence 34556666665544322111 123444455555555554
No 64
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=28.18 E-value=97 Score=27.28 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=12.8
Q ss_pred CeEEEEcCCCCeEEEEE
Q 028663 64 NEVYLMDFDGGVLFTIL 80 (205)
Q Consensus 64 ~~~~l~D~~G~~L~~i~ 80 (205)
-++.|+|++|+.|-++.
T Consensus 168 v~I~I~Da~G~vVrTi~ 184 (295)
T PRK05842 168 PAIQILNENNELVKTIP 184 (295)
T ss_pred EEEEEEcCCCCEEEEEe
Confidence 45778888888887774
No 65
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=28.12 E-value=2.5e+02 Score=20.70 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=25.2
Q ss_pred ceEEEEEEE-EeEEeCCCeEEEeCCCCEEEEEeccC
Q 028663 25 RETFTIWMK-SLVLNGKGCTVFDSDGHIMYRVDNYN 59 (205)
Q Consensus 25 ~~~l~v~~k-~~~~s~d~ftV~D~~G~~vf~V~g~~ 59 (205)
+-.|.|..- .++|+..+||| |..|++++..--|-
T Consensus 46 i~ayrI~~D~tlaFSd~HfTv-~~~g~Pi~qf~rY~ 80 (100)
T PF06903_consen 46 IDAYRITPDGTLAFSDTHFTV-DNDGKPIQQFIRYQ 80 (100)
T ss_pred eeeEEEeCCCeEEEecceEEE-CCCCCceEeEEEEE
Confidence 446666655 78999999999 44599998877664
No 66
>PF06357 Omega-toxin: Omega-atracotoxin; InterPro: IPR009415 This family consists of several Hadronyche versuta (Blue mountains funnel-web spider) specific omega-atracotoxin proteins. Omega-Atracotoxin-Hv1a is an insect-specific neurotoxin whose phylogenetic specificity derives from its ability to antagonise insect, but not vertebrate, voltage-gated calcium channels. Two spatially proximal residues, Asn(27) and Arg(35), form a contiguous molecular surface that is essential for toxin activity. It has been proposed that this surface of the beta-hairpin is a key site for interaction of the toxin with insect calcium channels [].; GO: 0019855 calcium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AXH_A 1HVW_A.
Probab=28.09 E-value=51 Score=19.54 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=7.3
Q ss_pred eCCCCEEEEEe
Q 028663 46 DSDGHIMYRVD 56 (205)
Q Consensus 46 D~~G~~vf~V~ 56 (205)
++|||.|+|.|
T Consensus 27 NeNGntV~RCd 37 (37)
T PF06357_consen 27 NENGNTVKRCD 37 (37)
T ss_dssp -SSS-EEEEE-
T ss_pred ccCCceeeccC
Confidence 78999999875
No 67
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=27.75 E-value=1.5e+02 Score=25.31 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=39.7
Q ss_pred CCeEEEeCCCCEEEEEeccCC------------CCCCeEEEEcCCCCeEEEEEecc-cccccceEEEEe
Q 028663 40 KGCTVFDSDGHIMYRVDNYNS------------KSNNEVYLMDFDGGVLFTILKKR-YFRLFGFWEGYK 95 (205)
Q Consensus 40 d~ftV~D~~G~~vf~V~g~~~------------s~~~~~~l~D~~G~~L~~i~~k~-~~s~~~~w~v~~ 95 (205)
+.+.|+|++++++-+..-+.. ...=.+.|+|.+|+.|++-|... . ++...|..--
T Consensus 23 e~v~lvDe~d~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~-~~Pg~Wd~s~ 90 (247)
T PLN02552 23 DECILVDENDNVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATKV-TFPLVWTNTC 90 (247)
T ss_pred CeEEEEcCCCCEEeeeEHhhhhccccccCCCceEEEEEEEEEcCCCeEEEEEecCCCC-CCCcceeccc
Confidence 678999999999988865321 11235678899999988877653 3 4677886664
No 68
>cd06165 Sortase_A_1 Sortase A (SrtA) or subfamily-1 sortases are cysteine transpeptidases found in gram-positive bacteria that anchor surface proteins to peptidoglycans of the bacterial cell wall envelope. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall sorting signal (usually a pentapeptide motif), and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. This group contains a subset of Class A (subfamily-1) sortases, excluding SrtA from Staphylococcus aureus. Sortase A cleaves between threonine and glycine of the LPXTG motif in a wide range of protein substrates. It affects the ability of a pathogen to establish successful infection. Sortase A contains an N-terminal region that functions as both a signal peptide for secretion and a stop-tra
Probab=27.18 E-value=84 Score=23.39 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=9.1
Q ss_pred CCeEEEEcCCCCeEEEEEe
Q 028663 63 NNEVYLMDFDGGVLFTILK 81 (205)
Q Consensus 63 ~~~~~l~D~~G~~L~~i~~ 81 (205)
++++.|.+.++.--+.+..
T Consensus 67 Gd~I~l~~~~~~~~Y~V~~ 85 (127)
T cd06165 67 GDKIYLTDKDNVYEYKVTS 85 (127)
T ss_pred CCEEEEEECCEEEEEEEee
Confidence 4555555544444444433
No 69
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=26.70 E-value=42 Score=32.10 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=20.2
Q ss_pred ceEEEEEeCCCCHHHHHHHH-HHHhh
Q 028663 176 DVLSMEVKPCVDLSLVMGLL-VVYGL 200 (205)
Q Consensus 176 dty~l~V~pgvD~ali~alv-v~lD~ 200 (205)
|...|.|.||.|.+|++||+ ++|++
T Consensus 226 dd~~l~irPGTD~ALalam~~~ii~e 251 (609)
T cd02769 226 GAEWIAIRPGTDVALMLALAHTLVTE 251 (609)
T ss_pred cCcEeccCCCcHHHHHHHHHHHHHHc
Confidence 44668999999999999999 45543
No 70
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=25.95 E-value=1.4e+02 Score=24.90 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=24.9
Q ss_pred CeEEEEcCCCCeEEEEEeccc-cc-ccceEEEEeeCCcccCCCCCceEEE
Q 028663 64 NEVYLMDFDGGVLFTILKKRY-FR-LFGFWEGYKSTGKVETNTKRPDFLV 111 (205)
Q Consensus 64 ~~~~l~D~~G~~L~~i~~k~~-~s-~~~~w~v~~~dg~~~~~~~~~lf~v 111 (205)
-.+.|+|.+|+.+-++.-... .. ..=.|.+...+|. .-..+..-|+|
T Consensus 124 v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~-~~~~G~Yt~~v 172 (221)
T PRK12634 124 VNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGN-RMAAGKYGVTA 172 (221)
T ss_pred EEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCC-cCCCeeeEEEE
Confidence 468888999998888754322 01 1225666543333 22233444444
No 71
>PRK13239 alkylmercury lyase; Provisional
Probab=25.94 E-value=1.2e+02 Score=25.18 Aligned_cols=31 Identities=32% Similarity=0.538 Sum_probs=23.7
Q ss_pred eEEEeCCCCEEEEEeccCCCCC---CeEEEEcCCCCeEEEE
Q 028663 42 CTVFDSDGHIMYRVDNYNSKSN---NEVYLMDFDGGVLFTI 79 (205)
Q Consensus 42 ftV~D~~G~~vf~V~g~~~s~~---~~~~l~D~~G~~L~~i 79 (205)
-+++|.+|+++ |+.+|.+ +++++ +|+.|.++
T Consensus 62 ~~~~d~~g~iv----~~plS~~pT~H~v~v---~Gr~lyt~ 95 (206)
T PRK13239 62 DTEYDEDGRII----GYGLTLRPTPHRFEV---DGRQLYTW 95 (206)
T ss_pred CeEECCCCCEE----eccccCCCcCcEEEE---CCEEEEee
Confidence 45899999995 4778764 66666 89988875
No 72
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=25.66 E-value=1.1e+02 Score=20.52 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=17.7
Q ss_pred CCCCeEEEEcCCCCeEEEEEe
Q 028663 61 KSNNEVYLMDFDGGVLFTILK 81 (205)
Q Consensus 61 s~~~~~~l~D~~G~~L~~i~~ 81 (205)
.+..++.++|.+|+.|..++=
T Consensus 43 ~G~WrV~V~~~~G~~l~~~~F 63 (66)
T PF11141_consen 43 PGDWRVEVVDEDGQVLGSLRF 63 (66)
T ss_pred CcCEEEEEEcCCCCEEEEEEE
Confidence 457899999999999988763
No 73
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=24.58 E-value=2.6e+02 Score=23.45 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.6
Q ss_pred CeEEEeCCCCEEEEEecc
Q 028663 41 GCTVFDSDGHIMYRVDNY 58 (205)
Q Consensus 41 ~ftV~D~~G~~vf~V~g~ 58 (205)
..+|+|++|++|++++..
T Consensus 129 ti~I~D~~G~~Vrt~~lg 146 (225)
T PRK06655 129 TVTITDSAGQVVRTIDLG 146 (225)
T ss_pred EEEEEcCCCCEEEEEecC
Confidence 388999999999999864
No 74
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=24.47 E-value=63 Score=23.96 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=22.0
Q ss_pred CCCeEEEeCCCCEEEEEeccCCCCCCeEEEEc
Q 028663 39 GKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMD 70 (205)
Q Consensus 39 ~d~ftV~D~~G~~vf~V~g~~~s~~~~~~l~D 70 (205)
.+++||.|+.|+=.-+-+|....=+.+..+.-
T Consensus 35 pdGlTv~Da~GqW~~~~~g~~~rE~Skvv~i~ 66 (104)
T PF12098_consen 35 PDGLTVLDAYGQWRDRATGRLIRERSKVVIIV 66 (104)
T ss_pred CCCceEEeccceEecCCCCcEeecccEEEEEE
Confidence 48999999999877766666544444444443
No 75
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=24.37 E-value=66 Score=20.55 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=12.5
Q ss_pred CCeEEEeCCCCEEEEEe
Q 028663 40 KGCTVFDSDGHIMYRVD 56 (205)
Q Consensus 40 d~ftV~D~~G~~vf~V~ 56 (205)
+=|.=.|++|+++|.=.
T Consensus 14 ~vYk~~D~~G~v~ysd~ 30 (60)
T PF13511_consen 14 EVYKWVDENGVVHYSDT 30 (60)
T ss_pred cEEEEECCCCCEEECcc
Confidence 33666799999998644
No 76
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=24.13 E-value=1.2e+02 Score=23.17 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCCeEEEEEeccc
Q 028663 63 NNEVYLMDFDGGVLFTILKKRY 84 (205)
Q Consensus 63 ~~~~~l~D~~G~~L~~i~~k~~ 84 (205)
..+..+.|.+|+..+.|.++.|
T Consensus 72 ~d~Y~F~D~TG~I~VeId~~~w 93 (126)
T TIGR00156 72 DDRYVFRDKSGEINVVIPAAVW 93 (126)
T ss_pred CceEEEECCCCCEEEEECHHHc
Confidence 4668899999999999988776
No 77
>PF04170 NlpE: NlpE N-terminal domain; InterPro: IPR007298 This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway []. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces. NlpE from Escherichia coli and Salmonella typhi is also known to confer copper tolerance in copper-sensitive strains of E. coli, and may be involved in copper efflux and delivery of copper to copper-dependent enzymes [].; PDB: 3LHN_A 2Z4I_B 2Z4H_A.
Probab=24.02 E-value=1.4e+02 Score=20.93 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=6.5
Q ss_pred cCCcceEEEEE
Q 028663 21 FSSKRETFTIW 31 (205)
Q Consensus 21 ~~~~~~~l~v~ 31 (205)
|..-.++|++.
T Consensus 10 C~GI~t~L~L~ 20 (87)
T PF04170_consen 10 CPGIKTTLTLN 20 (87)
T ss_dssp SSEEEEEEEE-
T ss_pred CCCeEEEEEEC
Confidence 66666666664
No 78
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=24.00 E-value=2.6e+02 Score=24.12 Aligned_cols=46 Identities=9% Similarity=0.079 Sum_probs=27.3
Q ss_pred EEeCCCeEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEEEEe
Q 028663 36 VLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILK 81 (205)
Q Consensus 36 ~~s~d~ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~~ 81 (205)
.+.++.+.+.|..+..-|+++=..-.-.-++.|+|++|+.+-++.-
T Consensus 115 ~v~~~~~~l~~~~~~~~~~~~l~~~a~~v~v~I~D~~G~~V~t~~l 160 (259)
T PRK12812 115 TVSDNAVKLTGADELIALKLYFPEDSDEGTLEIYDSNNKLVEKIDF 160 (259)
T ss_pred EEecceeeeccCcceeEEEEecCCcCceEEEEEEeCCCCEEEEEec
Confidence 3445666554443455555542222234678899999999877754
No 79
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=23.76 E-value=1.1e+02 Score=15.02 Aligned_cols=16 Identities=6% Similarity=0.123 Sum_probs=11.8
Q ss_pred CCeEEEeCCCCEEEEE
Q 028663 40 KGCTVFDSDGHIMYRV 55 (205)
Q Consensus 40 d~ftV~D~~G~~vf~V 55 (205)
+.+..+++||++....
T Consensus 3 G~~~~yy~nG~l~~~~ 18 (22)
T PF07661_consen 3 GEWKFYYENGKLKSEG 18 (22)
T ss_pred ceEEEEeCCCCEEEEE
Confidence 3577888888887664
No 80
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=23.04 E-value=1.2e+02 Score=22.91 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=15.5
Q ss_pred eEEEEcCCCCEEEEEEeee
Q 028663 148 ACKIVDNFGDTVAELKRKE 166 (205)
Q Consensus 148 ~~~I~~~~g~~VA~v~rk~ 166 (205)
...|+|.+|++||+++..|
T Consensus 112 ~v~i~D~~G~~Va~~~~t~ 130 (132)
T PF14539_consen 112 PVEITDADGEVVAEATITW 130 (132)
T ss_dssp EEEEEETTC-EEEEEEEEE
T ss_pred EEEEEECCCCEEEEEEEEE
Confidence 4678899999999999886
No 81
>PRK06803 flgE flagellar hook protein FlgE; Validated
Probab=22.88 E-value=1.3e+02 Score=27.61 Aligned_cols=40 Identities=30% Similarity=0.451 Sum_probs=24.0
Q ss_pred EEeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeE
Q 028663 36 VLNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVL 76 (205)
Q Consensus 36 ~~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L 76 (205)
.++|++ |.|.+.+|+..|+=.|.+ .+-..-.|.+++|.+|
T Consensus 76 AI~G~GFF~v~~~~g~~~YTR~G~F-~~d~~G~Lv~~~G~~v 116 (402)
T PRK06803 76 AISGGGFFVLKESDGDTAYTRAGMF-RSDVDGYLTDPQGMKL 116 (402)
T ss_pred EEcCCcEEEEEcCCCCeeEEeCCce-eECCCCCEEcCCCCEe
Confidence 445766 566677888788877764 3434444555555444
No 82
>TIGR01076 sortase_fam LPXTG-site transpeptidase (sortase) family protein. of an LPXTG motif to the cell wall. It also includes a protein required for correct assembly of an LPXTG-containing fimbrial protein, a set of homologous proteins from Streptococcus pneumoniae, in which LPXTG proteins are common. However, related proteins are found in Bacillus subtilis and Methanobacterium thermoautotrophicum, in which LPXTG-mediated cell wall attachment is not known.
Probab=22.61 E-value=1.3e+02 Score=22.76 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=8.0
Q ss_pred CCeEEEEcCCCCeEEEE
Q 028663 63 NNEVYLMDFDGGVLFTI 79 (205)
Q Consensus 63 ~~~~~l~D~~G~~L~~i 79 (205)
++.+.|.+.++.-...+
T Consensus 67 GD~i~v~~~~~~~~Y~V 83 (136)
T TIGR01076 67 GDMLYLHVGNEVLTYQV 83 (136)
T ss_pred CCEEEEEECCcEEEEEE
Confidence 44555555444444444
No 83
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=22.59 E-value=2.3e+02 Score=23.85 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=25.4
Q ss_pred CCCeEEEe-CCCCEEEEEeccCCCCCCeEEEEcCCCCeEEEEEeccc
Q 028663 39 GKGCTVFD-SDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKRY 84 (205)
Q Consensus 39 ~d~ftV~D-~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~ 84 (205)
-.+|.|+| ++|+++.+..+.. .++|..-+-+..|.....
T Consensus 95 ~R~f~i~d~~~G~~l~~a~s~W-------vliD~~trr~~ri~~~~~ 134 (261)
T PF01643_consen 95 YRDFEIYDAEDGELLARATSIW-------VLIDLETRRPVRIPEEII 134 (261)
T ss_dssp EEEEEEE--TTS-EEEEEEEEE-------EEEETTT-SEE---GGCT
T ss_pred EEEEEEEECCCCcEEEEEEEEE-------EEEEhhhCCcccCCHHHH
Confidence 37899999 9999999998875 778877666666665443
No 84
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=22.39 E-value=1.3e+02 Score=25.49 Aligned_cols=80 Identities=5% Similarity=0.076 Sum_probs=46.1
Q ss_pred cCCcceEEEEEEEEeEEeCCCeEEEe-----CCCCEEEEEeccCCCCCCeEEEEcCCCCe-EEEEEecccccccceEEEE
Q 028663 21 FSSKRETFTIWMKSLVLNGKGCTVFD-----SDGHIMYRVDNYNSKSNNEVYLMDFDGGV-LFTILKKRYFRLFGFWEGY 94 (205)
Q Consensus 21 ~~~~~~~l~v~~k~~~~s~d~ftV~D-----~~G~~vf~V~g~~~s~~~~~~l~D~~G~~-L~~i~~k~~~s~~~~w~v~ 94 (205)
|..-.++|++.. .+.|+... .+++..|.-.|......+.++|.|.+|+. .|.+....+ .+.+.
T Consensus 54 C~GI~ttLtL~~------DgTY~L~~~Ylg~k~~~~~f~~~G~w~~~~~~i~L~~~~g~~~yF~v~e~~L-~mLD~---- 122 (234)
T PRK10523 54 CEGIETSLFLEK------DGTWVMNERYLGAREEPSSFASYGTWARTADKLVLTDSKGEKSYYRAKGDAL-EMLDR---- 122 (234)
T ss_pred CCCceEEEEEcC------CCCEEEEEEEcCCCCCCCceEeeEEEEecCCEEEEecCCCCEeEEEECCCEE-EEecC----
Confidence 677778888742 34465543 22466788888744445777788888876 555554444 33322
Q ss_pred eeCCcccCCCCCceEEEEeee
Q 028663 95 KSTGKVETNTKRPDFLVRQSF 115 (205)
Q Consensus 95 ~~dg~~~~~~~~~lf~vkk~~ 115 (205)
+|. .-++++-++++|..
T Consensus 123 --~G~--~i~s~LnY~Lkkv~ 139 (234)
T PRK10523 123 --EGN--PIESQLNYTLEPVQ 139 (234)
T ss_pred --CCC--ccccCcceEEEecc
Confidence 332 22344556666554
No 85
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=22.19 E-value=3.2e+02 Score=21.33 Aligned_cols=56 Identities=13% Similarity=0.117 Sum_probs=33.6
Q ss_pred CCeEEEeCCCCEEEEEeccCCC----CCCeEE----EEcCC--CCeEEEEEecccccccceEEEEe
Q 028663 40 KGCTVFDSDGHIMYRVDNYNSK----SNNEVY----LMDFD--GGVLFTILKKRYFRLFGFWEGYK 95 (205)
Q Consensus 40 d~ftV~D~~G~~vf~V~g~~~s----~~~~~~----l~D~~--G~~L~~i~~k~~~s~~~~w~v~~ 95 (205)
+-|.|+|++|+++..+.-.... .+.-+. +.|.+ |..+++-|...-.++...|...-
T Consensus 5 E~~~v~d~~~~~~~~~~r~~~~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~ 70 (180)
T cd03676 5 ELYAVYGPFGEPLFEIERAASRLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLV 70 (180)
T ss_pred cceeeECCCCCEeEEEEecccccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeec
Confidence 5589999999999877654432 123334 33665 55555544433214577887665
No 86
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=21.69 E-value=8.9e+02 Score=24.89 Aligned_cols=120 Identities=9% Similarity=0.061 Sum_probs=61.3
Q ss_pred CCCEEEEEeccCCCCCCeEEEEcCCC-CeEEE-EEecccccccceEEEEeeCCcccCCCCCceEEEEeeeeecccCCeeE
Q 028663 48 DGHIMYRVDNYNSKSNNEVYLMDFDG-GVLFT-ILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCE 125 (205)
Q Consensus 48 ~G~~vf~V~g~~~s~~~~~~l~D~~G-~~L~~-i~~k~~~s~~~~w~v~~~dg~~~~~~~~~lf~vkk~~~~~~~k~~~~ 125 (205)
+++++|+.+- +.++.+.|.+| ++-.. ++.... .++|.|- +||. ...|++.-+. + ..++.+=
T Consensus 318 ~tkiAfv~~~-----~~~L~~~D~dG~n~~~ve~~~~~~-i~sP~~S---PDG~------~vAY~ts~e~-~-~g~s~vY 380 (912)
T TIGR02171 318 KAKLAFRNDV-----TGNLAYIDYTKGASRAVEIEDTIS-VYHPDIS---PDGK------KVAFCTGIEG-L-PGKSSVY 380 (912)
T ss_pred eeeEEEEEcC-----CCeEEEEecCCCCceEEEecCCCc-eecCcCC---CCCC------EEEEEEeecC-C-CCCceEE
Confidence 6778888772 22899999988 55433 666665 5777753 3554 3444342211 1 1244322
Q ss_pred E-EEecCCCCCceEEEEeeCCCeeEEEEcCCCCEEEEEEeeeecc--ceeeeeceEEEEEeCC
Q 028663 126 V-ILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARS--GVVFGEDVLSMEVKPC 185 (205)
Q Consensus 126 V-~l~~~~~~~~~~~i~G~~~~~~~~I~~~~g~~VA~v~rk~~~~--~~~~~~dty~l~V~pg 185 (205)
| .|..+.+..-.+.|+.- -=-.+.|.+..+.+|.-|+---.++ ..+....|+.|..+.|
T Consensus 381 v~~L~t~~~~~vkl~ve~a-aiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~g 442 (912)
T TIGR02171 381 VRNLNASGSGLVKLPVENA-AIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANG 442 (912)
T ss_pred EEehhccCCCceEeecccc-cccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCC
Confidence 2 12111122234445421 1122344444346666666533322 2455677888877765
No 87
>COG2849 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.47 E-value=2.9e+02 Score=23.01 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=41.9
Q ss_pred CCeEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEEEEecccccccceEEEEe
Q 028663 40 KGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYK 95 (205)
Q Consensus 40 d~ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~~s~~~~w~v~~ 95 (205)
+....+.++|++...|.=+.-..-.....+|.+|+...++..+.- -....+..|.
T Consensus 159 g~~k~yy~nGkl~~e~~~knG~~~G~~k~Y~enGkl~~e~~~kng-~~~G~~~~yd 213 (230)
T COG2849 159 GIAKTYYENGKLLSEVPYKNGKKNGVVKIYYENGKLVEEVTYKNG-KLDGVVKEYD 213 (230)
T ss_pred ccEEEEcCCCcEEEeecccCCcccceEEEEccCCCEeEEEEecCC-cccccEEEEe
Confidence 457888899999988877654445778888999999998888774 4566677775
No 88
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=21.35 E-value=73 Score=20.79 Aligned_cols=12 Identities=17% Similarity=0.634 Sum_probs=7.1
Q ss_pred CeEEEeCCCCEE
Q 028663 41 GCTVFDSDGHIM 52 (205)
Q Consensus 41 ~ftV~D~~G~~v 52 (205)
.|..+|+||++|
T Consensus 11 ~F~FYDen~~lV 22 (54)
T PF12142_consen 11 SFLFYDENGQLV 22 (54)
T ss_dssp EEEEE-TTS-EE
T ss_pred eeEEECCCCCEE
Confidence 477788888765
No 89
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=20.64 E-value=1.8e+02 Score=18.03 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=16.6
Q ss_pred CCCEEEEEeccC---CCCCCeEEEEcC-CCCeE
Q 028663 48 DGHIMYRVDNYN---SKSNNEVYLMDF-DGGVL 76 (205)
Q Consensus 48 ~G~~vf~V~g~~---~s~~~~~~l~D~-~G~~L 76 (205)
+|+.+|.|.-.. -....-....|+ +|..|
T Consensus 29 ~~~~~Y~v~~~~~~~~~~~~~~v~VDa~tG~Il 61 (64)
T PF03413_consen 29 NGRLVYEVEVVSDDDPDGGEYEVYVDAYTGEIL 61 (64)
T ss_dssp TCEEEEEEEEEBTTSTTTEEEEEEEETTT--EE
T ss_pred CCcEEEEEEEEEEecCCCCEEEEEEECCCCeEE
Confidence 889999998653 122233344787 46555
No 90
>KOG3503 consensus H/ACA snoRNP complex, subunit NOP10 [RNA processing and modification]
Probab=20.39 E-value=2.3e+02 Score=18.87 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=10.0
Q ss_pred CCCceEEEEeeeeec
Q 028663 104 TKRPDFLVRQSFNML 118 (205)
Q Consensus 104 ~~~~lf~vkk~~~~~ 118 (205)
.++...++||++.++
T Consensus 41 ySrqR~tlKKRFgll 55 (64)
T KOG3503|consen 41 YSRQRITLKKRFGLL 55 (64)
T ss_pred ccceeeeehhhhccc
Confidence 345667888887654
No 91
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=20.25 E-value=90 Score=21.95 Aligned_cols=19 Identities=37% Similarity=0.742 Sum_probs=15.5
Q ss_pred CeEEEeCCCCEEEEEeccC
Q 028663 41 GCTVFDSDGHIMYRVDNYN 59 (205)
Q Consensus 41 ~ftV~D~~G~~vf~V~g~~ 59 (205)
.+-++|.+|++++++.|+.
T Consensus 85 t~~~~d~~G~~v~~~~G~~ 103 (112)
T PF13098_consen 85 TIVFLDKDGKIVYRIPGYL 103 (112)
T ss_dssp EEEECTTTSCEEEEEESS-
T ss_pred EEEEEcCCCCEEEEecCCC
Confidence 4667889999999999974
Done!