Query 028663
Match_columns 205
No_of_seqs 106 out of 434
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 01:18:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 9.8E-43 3.3E-47 288.8 20.9 182 18-204 30-213 (217)
2 1zxu_A AT5G01750 protein; PFAM 98.1 3.5E-05 1.2E-09 62.9 11.6 98 47-154 34-136 (217)
3 3c5n_A Tubby-related protein 1 72.7 38 0.0013 27.7 10.9 100 75-182 15-135 (246)
4 2fim_A Tubby related protein 1 72.3 37 0.0013 28.2 10.5 103 72-182 36-159 (276)
5 2v2f_A Penicillin binding prot 59.5 5.7 0.0002 20.7 2.0 13 43-55 8-20 (26)
6 1hzt_A Isopentenyl diphosphate 40.9 24 0.00082 26.6 3.6 54 40-93 4-64 (190)
7 3c12_A FLGD, flagellar protein 40.1 17 0.00057 26.8 2.5 17 64-80 41-57 (138)
8 2ln7_A LPXTG-SITE transpeptida 38.1 6.3 0.00022 29.5 -0.2 20 39-58 79-98 (147)
9 4he6_A Peptidase family U32; u 37.0 42 0.0014 22.5 4.0 33 46-79 16-50 (89)
10 2dho_A Isopentenyl-diphosphate 35.6 58 0.002 25.9 5.3 55 39-93 26-91 (235)
11 2h1z_A Hybrid atracotoxin; bet 33.5 30 0.001 20.0 2.2 13 45-57 27-39 (39)
12 2pny_A Isopentenyl-diphosphate 29.9 65 0.0022 25.9 4.7 55 39-93 37-102 (246)
13 3h9n_A Ribosome maturation fac 28.2 82 0.0028 24.1 4.8 29 67-95 104-132 (177)
14 3fn5_A Sortase A; sortase-fold 28.1 13 0.00046 29.1 0.2 41 39-79 102-143 (187)
15 2kw8_A LPXTG-SITE transpeptida 27.1 13 0.00044 28.1 -0.1 16 42-57 95-110 (158)
16 3oe3_A Putative periplasmic pr 25.4 82 0.0028 22.0 3.9 39 34-78 46-84 (98)
17 1q27_A Putative nudix hydrolas 25.1 71 0.0024 23.2 3.9 53 40-92 7-65 (171)
18 1t2w_A Sortase; transpeptidase 22.4 26 0.00089 25.8 0.9 20 39-58 78-97 (145)
19 3a69_A Flagellar HOOK protein 22.4 31 0.0011 30.3 1.4 42 36-78 75-117 (402)
20 3rcc_A Sortase SRTA; sortase f 22.0 16 0.00054 27.7 -0.5 40 39-78 84-124 (160)
21 3g66_A Sortase C; pilus, trans 21.7 28 0.00095 27.8 0.9 20 39-58 132-151 (212)
22 1axh_A Atracotoxin-HVI, ACTX-H 21.7 53 0.0018 18.7 1.8 11 46-56 27-37 (37)
23 4g1j_A Sortase family protein; 21.6 28 0.00095 28.0 0.9 21 39-59 140-160 (222)
24 3dzw_A Agglutinin; lectin, man 21.2 2E+02 0.0069 19.5 6.5 17 40-58 29-45 (109)
25 1wlg_A Flagellar HOOK protein 20.5 36 0.0012 28.6 1.4 41 37-78 6-47 (299)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=100.00 E-value=9.8e-43 Score=288.77 Aligned_cols=182 Identities=21% Similarity=0.357 Sum_probs=141.4
Q ss_pred CcccCCcceEEEEEEEEeEEeCCCeEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEEEEecccccccceEEEEeeC
Q 028663 18 PCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKST 97 (205)
Q Consensus 18 ~~~~~~~~~~l~v~~k~~~~s~d~ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~~s~~~~w~v~~~d 97 (205)
++||+.+++.|+||+|.+++++++|+|+|++|+++|+|+|+.++++.++.|+|++|++|++|++|.+ +++++|++|.
T Consensus 30 ~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~rk~~-~~~~~~~v~~-- 106 (217)
T 1zxu_A 30 PKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMV-SMHDRWQVFR-- 106 (217)
T ss_dssp GGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCEEEEEEC-------CEEEEEE--
T ss_pred ccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCEEEEEEcccc-ccCcEEEEEc--
Confidence 5799999999999999999998899999999999999999998999999999999999999999999 9999999999
Q ss_pred CcccCCCCCceEEEEeeeeecccCCeeEEEEecCC-CCCceEEEEeeCCCeeEEEEcCC-CCEEEEEEeeeeccceeeee
Q 028663 98 GKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDN-NHPYNYAMTSLNGKCACKIVDNF-GDTVAELKRKEARSGVVFGE 175 (205)
Q Consensus 98 g~~~~~~~~~lf~vkk~~~~~~~k~~~~V~l~~~~-~~~~~~~i~G~~~~~~~~I~~~~-g~~VA~v~rk~~~~~~~~~~ 175 (205)
++ ..++++++|+||+++. ++.+++++|++++++ ++.++|+|+|+|++++|+|++++ |++||+|+|+++++++++++
T Consensus 107 ~~-~~~~~~~i~~vrk~~~-~~~~~~~~V~~~~~~~~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~kk~~~~~~~~~~ 184 (217)
T 1zxu_A 107 GG-STDQRDLLYTVKRSSM-LQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGK 184 (217)
T ss_dssp TT-CCCGGGEEEEEEC--------CCEEEEETTCCC-CCCSEEEESCTTTTCCEEEETTTCCEEEEEEEC--------CB
T ss_pred CC-CCCCCcEEEEEEEecc-ccCCCeEEEEECCCCCCCceEEEEEEeEeCCEEEEEECCCCEEEEEEEeeeeccccccCC
Confidence 43 2234578999999842 245789999887543 34678999999999999999876 79999999998888899999
Q ss_pred ceEEEEEeCCCCHHHHHHHHHHHhhhhcc
Q 028663 176 DVLSMEVKPCVDLSLVMGLLVVYGLINSL 204 (205)
Q Consensus 176 dty~l~V~pgvD~ali~alvv~lD~i~~~ 204 (205)
|+|.|+|+|++|.+|+||++++||++++.
T Consensus 185 D~y~l~V~p~~D~aliialvv~iD~~~~~ 213 (217)
T 1zxu_A 185 DNFSVTVYPNVDYAFIASLVVILDDVNRE 213 (217)
T ss_dssp CSEEEEECTTSBHHHHHHHHHHHHHHHC-
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999763
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=98.09 E-value=3.5e-05 Score=62.91 Aligned_cols=98 Identities=13% Similarity=0.147 Sum_probs=66.0
Q ss_pred CCCCEEEEEeccCCCCCC-eEEEEcCCCCeEEEEEecccccccceEEEEeeCCcccCCCCCceEEEEeeeeecccCCeeE
Q 028663 47 SDGHIMYRVDNYNSKSNN-EVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCE 125 (205)
Q Consensus 47 ~~G~~vf~V~g~~~s~~~-~~~l~D~~G~~L~~i~~k~~~s~~~~w~v~~~dg~~~~~~~~~lf~vkk~~~~~~~k~~~~ 125 (205)
+.+...|.|+-+.+++.+ +..++|.+|+.++++..+.+ ++..+..++..+| +++++|+++.. +..++|+
T Consensus 34 ~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~-~~~~~~~l~D~~G-------~~l~~i~rk~~--~~~~~~~ 103 (217)
T 1zxu_A 34 APYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVF-GLHDKRVLLDGSG-------TPVVTLREKMV--SMHDRWQ 103 (217)
T ss_dssp CSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSST-TCCSEEEEECTTS-------CEEEEEEC--------CEEE
T ss_pred CCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEcccc-CCCCEEEEECCCC-------CEEEEEEcccc--ccCcEEE
Confidence 468999999999888876 99999999999999999988 8899999998555 59999999753 3468999
Q ss_pred EEEecCCC-CCceEEEEee--C-CCeeEEEEcC
Q 028663 126 VILGLDNN-HPYNYAMTSL--N-GKCACKIVDN 154 (205)
Q Consensus 126 V~l~~~~~-~~~~~~i~G~--~-~~~~~~I~~~ 154 (205)
|+.+.... ..+-++|+-. + +...|.|...
T Consensus 104 v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~ 136 (217)
T 1zxu_A 104 VFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLG 136 (217)
T ss_dssp EEETTCCCGGGEEEEEEC-------CCEEEEET
T ss_pred EEcCCCCCCCcEEEEEEEeccccCCCeEEEEEC
Confidence 98654311 1235666533 2 3556788754
No 3
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=72.74 E-value=38 Score=27.70 Aligned_cols=100 Identities=10% Similarity=0.031 Sum_probs=54.0
Q ss_pred eEEEEEecc--c-ccccceEEEEeeCCcccCCCCCceEEEEeeeeecccCCeeEEEEecCC----CCCceEEEEeeCCCe
Q 028663 75 VLFTILKKR--Y-FRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDN----NHPYNYAMTSLNGKC 147 (205)
Q Consensus 75 ~L~~i~~k~--~-~s~~~~w~v~~~dg~~~~~~~~~lf~vkk~~~~~~~k~~~~V~l~~~~----~~~~~~~i~G~~~~~ 147 (205)
.-+.|++.. + ..+.++|..|. ++ +.+..|...||... +....+-|++.... +...-=+++.||++.
T Consensus 15 ~qC~I~R~k~g~~~~~yp~y~l~~--~~---~~~~fLlaark~~~--~~~s~YiIS~d~~dlsr~s~~yvGKLrsNf~Gt 87 (246)
T 3c5n_A 15 VRCRLTRDKKGMDRGMYPSYFLHL--DT---EKKVFLLAGRKRKR--SKTANYLISIDPTNLSRGGENFIGKLRSNLLGN 87 (246)
T ss_dssp EEEEEEECC------CCCEEEEEE--SS---SSCCEEEEEEECTT--CSSCEEEEESCTTC------CEEEEEEECSSSS
T ss_pred EEEEEEEeCCCCCCCCceEEEEEE--eC---CCcEEEEeeeeccC--CCCceEEEEeCccccccCCceEEEEEEEccCCC
Confidence 345565532 1 13568888888 22 12334556665442 12356777765432 122334567899999
Q ss_pred eEEEEcCC--------------CCEEEEEEeeeeccceeeeeceEEEEE
Q 028663 148 ACKIVDNF--------------GDTVAELKRKEARSGVVFGEDVLSMEV 182 (205)
Q Consensus 148 ~~~I~~~~--------------g~~VA~v~rk~~~~~~~~~~dty~l~V 182 (205)
.|+|||.. ...+|.|.-+....+ ..|.-...+.+
T Consensus 88 ~F~iyD~g~~p~~~~s~~~~~~r~el~~v~Ye~n~l~-~~gPR~m~v~i 135 (246)
T 3c5n_A 88 RFTVFDNGQNPQRGYSTNVASLRQELAAVIYETNVLG-FRGPRRMTVII 135 (246)
T ss_dssp EEEEECSCBCGGGCTTSCGGGBCCEEEEEEECCCCCC----CCCEEEEE
T ss_pred EEEEECCCCCcccccCcccccccEEEEEEEEEecccC-CCCCeEEEEEe
Confidence 99999852 167888887753211 12334555555
No 4
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=72.30 E-value=37 Score=28.24 Aligned_cols=103 Identities=10% Similarity=0.024 Sum_probs=53.7
Q ss_pred CCCeEEEEEecc--c-ccccceEEEEeeCCcccCCCCCceEEEEeeeeecccCCeeEEEEecCC----CCCceEEEEeeC
Q 028663 72 DGGVLFTILKKR--Y-FRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDN----NHPYNYAMTSLN 144 (205)
Q Consensus 72 ~G~~L~~i~~k~--~-~s~~~~w~v~~~dg~~~~~~~~~lf~vkk~~~~~~~k~~~~V~l~~~~----~~~~~~~i~G~~ 144 (205)
+|-.-+.|++.. + ..+.++|..|. +. +.+..|...||... +....|-|++.... +...-=+++.||
T Consensus 36 ~~~iqC~I~R~k~g~~~g~yp~y~L~l--~~---~~~~fLLaarK~k~--~~ts~YiIS~d~~dlsr~s~~yvGKLrSNf 108 (276)
T 2fim_A 36 GRTVRCRLTRDKKGMDRGMYPSYFLHL--DT---EKKVFLLAGRKRKR--SKTANYLISIDPTNLSRGGENFIGKLRSNL 108 (276)
T ss_dssp TCCEEEEEEEEC-------CCEEEEEE--CS---SSCEEEEEEEECTT--CSSCEEEEESCTTC------CEEEEEEECS
T ss_pred CCeEEEEEEEeCCCCCCCCceEEEEEE--eC---CCCEEEEEEEeccC--CCCceEEEEecchhcccCCceEEEEEEEcc
Confidence 344556675432 1 13568899998 22 23345666665442 12356777765331 122234567899
Q ss_pred CCeeEEEEcCC--------------CCEEEEEEeeeeccceeeeeceEEEEE
Q 028663 145 GKCACKIVDNF--------------GDTVAELKRKEARSGVVFGEDVLSMEV 182 (205)
Q Consensus 145 ~~~~~~I~~~~--------------g~~VA~v~rk~~~~~~~~~~dty~l~V 182 (205)
++..|+|||.. ...+|.|.-+....+ ..|.-...+.+
T Consensus 109 lGtkF~iyD~G~~p~~~~s~~~~~~r~el~~V~Ye~nvlg-~~gPR~m~v~i 159 (276)
T 2fim_A 109 LGNRFTVFDNGQNPQRGYSTNVASLRQELAAVIYETNVLG-FRGPRRMTVII 159 (276)
T ss_dssp SSSEEEEECSSBCGGGCTTSCGGGBCCEEEEEEEC----------CCEEEEE
T ss_pred CCCEEEEECCCCCcccccCcccccccEEEEEEEEEecccC-CCCCeEEEEEe
Confidence 99999999852 167888887653111 12334555555
No 5
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=59.51 E-value=5.7 Score=20.68 Aligned_cols=13 Identities=8% Similarity=0.529 Sum_probs=10.4
Q ss_pred EEEeCCCCEEEEE
Q 028663 43 TVFDSDGHIMYRV 55 (205)
Q Consensus 43 tV~D~~G~~vf~V 55 (205)
.|||.||+++..+
T Consensus 8 ~IYD~~g~~i~~l 20 (26)
T 2v2f_A 8 KIYDNKNQLIADL 20 (26)
T ss_pred EEEeCCCCEeeec
Confidence 5788888888776
No 6
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=40.93 E-value=24 Score=26.59 Aligned_cols=54 Identities=15% Similarity=0.271 Sum_probs=18.5
Q ss_pred CCeEEEeCCCCEEEEEeccCCCC-------CCeEEEEcCCCCeEEEEEecccccccceEEE
Q 028663 40 KGCTVFDSDGHIMYRVDNYNSKS-------NNEVYLMDFDGGVLFTILKKRYFRLFGFWEG 93 (205)
Q Consensus 40 d~ftV~D~~G~~vf~V~g~~~s~-------~~~~~l~D~~G~~L~~i~~k~~~s~~~~w~v 93 (205)
+-+.|+|.+|+++..+.-..... .-...+.+.+|+.|+.-|...-..+.+.|..
T Consensus 4 E~~~v~d~~~~~~g~~~r~~~~~~~~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~ 64 (190)
T 1hzt_A 4 EHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTN 64 (190)
T ss_dssp ---------------------------CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEE
T ss_pred eEEEEECCCCCEeeeEEHhhhcccCCceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccC
Confidence 35789999999998776554331 2245678888887775543321134678887
No 7
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=40.08 E-value=17 Score=26.75 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=11.2
Q ss_pred CeEEEEcCCCCeEEEEE
Q 028663 64 NEVYLMDFDGGVLFTIL 80 (205)
Q Consensus 64 ~~~~l~D~~G~~L~~i~ 80 (205)
-.+.|+|++|+.+-++.
T Consensus 41 v~v~I~d~~G~~V~t~~ 57 (138)
T 3c12_A 41 VNFEITDANGTFVKQLS 57 (138)
T ss_dssp EEEEEECSSCCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEE
Confidence 44567777777776665
No 8
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=38.13 E-value=6.3 Score=29.53 Aligned_cols=20 Identities=5% Similarity=0.072 Sum_probs=12.3
Q ss_pred CCCeEEEeCCCCEEEEEecc
Q 028663 39 GKGCTVFDSDGHIMYRVDNY 58 (205)
Q Consensus 39 ~d~ftV~D~~G~~vf~V~g~ 58 (205)
||.+.|.+.++...|+|+..
T Consensus 79 GD~i~v~~~~~~~~Y~V~~~ 98 (147)
T 2ln7_A 79 KDTLVLEYDNKTYTYEIQKI 98 (147)
T ss_dssp TCEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEEeE
Confidence 35566666666666666654
No 9
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=36.99 E-value=42 Score=22.47 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=25.1
Q ss_pred eCC-CCEEEEEeccCCCCCCeEEEEcCCC-CeEEEE
Q 028663 46 DSD-GHIMYRVDNYNSKSNNEVYLMDFDG-GVLFTI 79 (205)
Q Consensus 46 D~~-G~~vf~V~g~~~s~~~~~~l~D~~G-~~L~~i 79 (205)
|.+ |.....+++++ +.++.+.++-+.| +.-++|
T Consensus 16 ~~~~g~~~ie~rN~f-~~GD~iEi~~P~g~~~~~~v 50 (89)
T 4he6_A 16 DPETGIATVQQRNHF-RPGDEVEFFGPEIENFTQVI 50 (89)
T ss_dssp ETTTTEEEEEESSCB-CTTCEEEEESTTSCCEEEEC
T ss_pred eCCCCEEEEEEcCCc-CCCCEEEEEcCCCCcEEEEe
Confidence 444 77788888885 6899999999999 544554
No 10
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=35.62 E-value=58 Score=25.93 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=35.0
Q ss_pred CCCeEEEeCCCCEEEEEeccCCC--------CC---CeEEEEcCCCCeEEEEEecccccccceEEE
Q 028663 39 GKGCTVFDSDGHIMYRVDNYNSK--------SN---NEVYLMDFDGGVLFTILKKRYFRLFGFWEG 93 (205)
Q Consensus 39 ~d~ftV~D~~G~~vf~V~g~~~s--------~~---~~~~l~D~~G~~L~~i~~k~~~s~~~~w~v 93 (205)
.+-+.|+|++|+++.++.-.... .. -...+.|.+|+.|+.-|...-..+.+.|..
T Consensus 26 ~E~~~lvd~~~~~~G~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~ 91 (235)
T 2dho_A 26 AEMCILIDENDNKIGAETKKNCHLNENIEKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTN 91 (235)
T ss_dssp CCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEES
T ss_pred CcEEEEEcCCCCEEEEEEhHHhccccccCCCceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEe
Confidence 34589999999999998544211 11 133578989988876443321134567874
No 11
>2h1z_A Hybrid atracotoxin; beta-hairpin, cystine knot; NMR {Hadronyche versuta}
Probab=33.49 E-value=30 Score=20.01 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=10.6
Q ss_pred EeCCCCEEEEEec
Q 028663 45 FDSDGHIMYRVDN 57 (205)
Q Consensus 45 ~D~~G~~vf~V~g 57 (205)
.++||+.|+|.+.
T Consensus 27 ~NeNGntV~rC~~ 39 (39)
T 2h1z_A 27 RNENGHTVYYCRA 39 (39)
T ss_dssp ECSSCCEEEEEEC
T ss_pred eccCCCEEEeecC
Confidence 3789999999863
No 12
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=29.86 E-value=65 Score=25.87 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=34.7
Q ss_pred CCCeEEEeCCCCEEEEEeccCCC--------CC---CeEEEEcCCCCeEEEEEecccccccceEEE
Q 028663 39 GKGCTVFDSDGHIMYRVDNYNSK--------SN---NEVYLMDFDGGVLFTILKKRYFRLFGFWEG 93 (205)
Q Consensus 39 ~d~ftV~D~~G~~vf~V~g~~~s--------~~---~~~~l~D~~G~~L~~i~~k~~~s~~~~w~v 93 (205)
.+-+.|+|++|+++.++.-.... .. -...+.|.+|+.|+.-|...-..+.+.|..
T Consensus 37 ~E~~~lvd~~~~~iG~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~ 102 (246)
T 2pny_A 37 EEMLIVVDENDKVIGADTKRNCHLNENIEKGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTD 102 (246)
T ss_dssp TCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCC
T ss_pred cceEEEEcCCCCEEEEEEhHHhccccccCCCcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEe
Confidence 35589999999999998554211 11 233578999988776443321034567763
No 13
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=28.23 E-value=82 Score=24.07 Aligned_cols=29 Identities=7% Similarity=-0.093 Sum_probs=18.0
Q ss_pred EEEcCCCCeEEEEEecccccccceEEEEe
Q 028663 67 YLMDFDGGVLFTILKKRYFRLFGFWEGYK 95 (205)
Q Consensus 67 ~l~D~~G~~L~~i~~k~~~s~~~~w~v~~ 95 (205)
.+.|.+|+.|-+|..=+-..-++-|.+-.
T Consensus 104 ~V~~~~g~~lG~V~~v~~~gandvl~V~~ 132 (177)
T 3h9n_A 104 TVVNLEGYTMGTVTEMMETGSNDVLVVKA 132 (177)
T ss_dssp EEEETTCCEEEEEEEEEESSSCEEEEEEC
T ss_pred EEEeCCCCEEEEEEEEeeCCCcEEEEEEe
Confidence 45677777777777654214466676654
No 14
>3fn5_A Sortase A; sortase-fold, hydrolase; HET: EPE; 1.50A {Streptococcus pyogenes serotype M1} PDB: 3fn6_A 3fn7_A
Probab=28.09 E-value=13 Score=29.06 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=24.1
Q ss_pred CCCeEEEeCCCCEEEEEeccCCCCCCeEEEEcC-CCCeEEEE
Q 028663 39 GKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDF-DGGVLFTI 79 (205)
Q Consensus 39 ~d~ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~-~G~~L~~i 79 (205)
||.+.|.+.++...|+|++...--+.++.+++. .|++.+||
T Consensus 102 GD~I~v~~~~~~~~Y~V~~~~vV~p~d~~vl~~~~g~~~LTL 143 (187)
T 3fn5_A 102 GMSIYLTDKEKIYEYIIKDVFTVAPERVDVIDDTAGLKEVTL 143 (187)
T ss_dssp TCEEEEECSSEEEEEEEEEEEEECTTCGGGGSCCTTCCEEEE
T ss_pred CCEEEEEECCeEEEEEEeeEEEECcccceeeccCCCCCEEEE
Confidence 577888888888888888764322333333333 34555443
No 15
>2kw8_A LPXTG-SITE transpeptidase family protein; sortase, SRTA, protein binding; NMR {Bacillus anthracis}
Probab=27.10 E-value=13 Score=28.09 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=6.6
Q ss_pred eEEEeCCCCEEEEEec
Q 028663 42 CTVFDSDGHIMYRVDN 57 (205)
Q Consensus 42 ftV~D~~G~~vf~V~g 57 (205)
+.|.+.++...|+|.+
T Consensus 95 i~v~~~~~~~~Y~V~~ 110 (158)
T 2kw8_A 95 IYLYDNENEYEYAVTG 110 (158)
T ss_dssp EEEECSSEEEEEEEEE
T ss_pred EEEEECCcEEEEEEEE
Confidence 3444444444444433
No 16
>3oe3_A Putative periplasmic protein; beta barrel, hydrolase inhibitor; 1.51A {Salmonella enterica}
Probab=25.41 E-value=82 Score=22.03 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=24.8
Q ss_pred EeEEeCCCeEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 34 SLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 34 ~~~~s~d~ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
..+-||-.|.--|.+|...++-+|. +..|.|..|+|++.
T Consensus 46 v~SASGarY~~~~~~~~y~lwtKG~------eA~L~~~~g~~i~~ 84 (98)
T 3oe3_A 46 MKMASGANYEAIDKNYTYKLYTKGK------TAELVEGDDKPVLS 84 (98)
T ss_dssp EEC--CEEEEESSTTCCCEEEEETT------EEEEEETTTEEEEE
T ss_pred EEecCcceEEccCCCCcEEEEEeCC------cEEEEECCCCEEEc
Confidence 3444555676555577777777764 55788888888765
No 17
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=25.12 E-value=71 Score=23.15 Aligned_cols=53 Identities=4% Similarity=0.013 Sum_probs=32.5
Q ss_pred CCeEEEeCCCCEEEEEeccCC------CCCCeEEEEcCCCCeEEEEEecccccccceEE
Q 028663 40 KGCTVFDSDGHIMYRVDNYNS------KSNNEVYLMDFDGGVLFTILKKRYFRLFGFWE 92 (205)
Q Consensus 40 d~ftV~D~~G~~vf~V~g~~~------s~~~~~~l~D~~G~~L~~i~~k~~~s~~~~w~ 92 (205)
+-+.|+|.+|+++..+.-... ...-...+.+.+|+.|+.-|...-..+.+.|.
T Consensus 7 E~~~~~d~~~~~~g~~~r~~~~l~~~~~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~ 65 (171)
T 1q27_A 7 ERLDLVNERDEVVGQILRTDPALRWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALD 65 (171)
T ss_dssp SEEEEESSSSCEEEEEESSCTTSCTTSCEEEEEEEEETTTEEEECCSCCSSSCCCCSCC
T ss_pred eeeeeecCCCCEeceEEhhhhccccccceEEEEEEECCCCeEEEEEecCCCCCCCCccc
Confidence 458999999999998776543 11224456788886655433222201356676
No 18
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=22.37 E-value=26 Score=25.82 Aligned_cols=20 Identities=10% Similarity=0.089 Sum_probs=14.3
Q ss_pred CCCeEEEeCCCCEEEEEecc
Q 028663 39 GKGCTVFDSDGHIMYRVDNY 58 (205)
Q Consensus 39 ~d~ftV~D~~G~~vf~V~g~ 58 (205)
||.+.|++.++...|+|.+.
T Consensus 78 Gd~i~v~~~~~~~~Y~V~~~ 97 (145)
T 1t2w_A 78 GSMVYFKVGNETRKYKMTSI 97 (145)
T ss_dssp TCEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEECCEEEEEEEEEE
Confidence 46677777777777777765
No 19
>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp}
Probab=22.37 E-value=31 Score=30.26 Aligned_cols=42 Identities=21% Similarity=0.390 Sum_probs=28.8
Q ss_pred EEeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 36 VLNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 36 ~~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
.++|++ |.|.+.+|+..|+=.|.+ .+-..=.|.+++|.+|+-
T Consensus 75 AI~G~GFF~V~~~~G~~~YTR~G~F-~~D~~G~LV~~~G~~v~G 117 (402)
T 3a69_A 75 AISQNGFFRLVDSNGSVFYSRNGQF-KLDENRNLVNMQGMQLTG 117 (402)
T ss_dssp CCSSSCEEEEECTTCCEEEESCCEE-EECTTSCEECTTCCEEEE
T ss_pred EEcCCcEEEEEcCCCCEEEEeceeE-EECCCCCEEcCCCCEeec
Confidence 445777 667778888888888874 343444577778877764
No 20
>3rcc_A Sortase SRTA; sortase fold, beta-barrel, housekeeping sortase, surface Pro anchoring, PILI anchoring, PILI biogenesis; 3.10A {Streptococcus agalactiae serogroup V}
Probab=21.97 E-value=16 Score=27.73 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=23.2
Q ss_pred CCCeEEEeCCCCEEEEEeccCCCCCCeEEEEcC-CCCeEEE
Q 028663 39 GKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDF-DGGVLFT 78 (205)
Q Consensus 39 ~d~ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~-~G~~L~~ 78 (205)
||.+.|.+.++...|+|+....--+.++.+++. .|++.++
T Consensus 84 GD~i~v~~~~~~~~Y~V~~~~vv~p~~~~~l~~~~~~~~lt 124 (160)
T 3rcc_A 84 GMKVYLTDKSKVYTYTITEISKVTPEHVEVIDDTPGKSQLT 124 (160)
T ss_dssp TCEECCBCSSCBCCEEEEEEEEECTTCCCCCCCCTTCCEEE
T ss_pred CCEEEEEECCEEEEEEEeeEEEECcccceeeccCCCCCEEE
Confidence 566778888888888887763222333333333 3455444
No 21
>3g66_A Sortase C; pilus, transferase; HET: MES; 1.70A {Streptococcus pneumoniae} PDB: 3g69_A*
Probab=21.65 E-value=28 Score=27.82 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=14.7
Q ss_pred CCCeEEEeCCCCEEEEEecc
Q 028663 39 GKGCTVFDSDGHIMYRVDNY 58 (205)
Q Consensus 39 ~d~ftV~D~~G~~vf~V~g~ 58 (205)
||.+.|++.+|...|+|...
T Consensus 132 GD~I~v~~~~~~~~Y~V~~~ 151 (212)
T 3g66_A 132 GDIFYLHVLDQVLAYQVDQI 151 (212)
T ss_dssp TCEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEECCeEEEEEEeeE
Confidence 56677777777777777765
No 22
>1axh_A Atracotoxin-HVI, ACTX-HVI; neurotoxin, insecticidal toxin, cystine knot, funnel-WEB; NMR {Hadronyche versuta} SCOP: g.3.6.2
Probab=21.65 E-value=53 Score=18.67 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=9.4
Q ss_pred eCCCCEEEEEe
Q 028663 46 DSDGHIMYRVD 56 (205)
Q Consensus 46 D~~G~~vf~V~ 56 (205)
++|||.|+|.+
T Consensus 27 NeNGntV~RC~ 37 (37)
T 1axh_A 27 NENGNTVKRCD 37 (37)
T ss_dssp CSSSCEEEEEC
T ss_pred ccCCcEeeecC
Confidence 78999999874
No 23
>4g1j_A Sortase family protein; cysteine protease, extracellular, transferase; 1.75A {Streptococcus agalactiae serogroup V} PDB: 3tb7_A 3rbi_A 3rbk_A 3tbe_A 3rbj_A
Probab=21.58 E-value=28 Score=28.03 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=15.0
Q ss_pred CCCeEEEeCCCCEEEEEeccC
Q 028663 39 GKGCTVFDSDGHIMYRVDNYN 59 (205)
Q Consensus 39 ~d~ftV~D~~G~~vf~V~g~~ 59 (205)
||.+.|.+.+|...|+|++..
T Consensus 140 GD~I~v~~~~~~~~Y~V~~~~ 160 (222)
T 4g1j_A 140 GDRFYIEHIGGKIAYQVDQIK 160 (222)
T ss_dssp TCEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEECCEEEEEEEeeEE
Confidence 566777777777777777653
No 24
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=21.19 E-value=2e+02 Score=19.53 Aligned_cols=17 Identities=12% Similarity=0.042 Sum_probs=8.2
Q ss_pred CCeEEEeCCCCEEEEEecc
Q 028663 40 KGCTVFDSDGHIMYRVDNY 58 (205)
Q Consensus 40 d~ftV~D~~G~~vf~V~g~ 58 (205)
+...++|. + .++...+.
T Consensus 29 GnLvly~~-~-~~vW~snt 45 (109)
T 3dzw_A 29 CNLVLYDV-D-KPIWATNT 45 (109)
T ss_dssp SCEEEEET-T-EEEEECCC
T ss_pred CcEEEEeC-C-EEEEECCc
Confidence 44666665 3 34444443
No 25
>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} SCOP: b.152.1.1 PDB: 2bgy_A 2bgz_A
Probab=20.53 E-value=36 Score=28.59 Aligned_cols=41 Identities=22% Similarity=0.399 Sum_probs=21.9
Q ss_pred EeCCC-eEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEE
Q 028663 37 LNGKG-CTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFT 78 (205)
Q Consensus 37 ~s~d~-ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 78 (205)
++|++ |.|.+.+|+..|+=.|.+ .+-..=.|.+.+|.+|+-
T Consensus 6 i~g~gff~v~~~~g~~~yTR~G~f-~~d~~g~lv~~~G~~v~g 47 (299)
T 1wlg_A 6 ISQNGFFRLVDSNGSVFYSRNGQF-KLDENRNLVNMQGMQLTG 47 (299)
T ss_dssp CSSSCEEEEECTTCCEEEESCCEE-EECTTSCEECTTCCEEEE
T ss_pred EcCCCEEEEEcCCCCEEEeeCCCC-cCCCCCCEEcCCCCEEEe
Confidence 44555 455566777777666653 333333445555555443
Done!