Query 028665
Match_columns 205
No_of_seqs 159 out of 1403
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 15:03:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 100.0 4.4E-33 9.6E-38 220.7 12.7 128 20-162 78-205 (205)
2 KOG0544 FKBP-type peptidyl-pro 100.0 1.7E-30 3.7E-35 180.9 11.2 106 53-162 2-108 (108)
3 PRK11570 peptidyl-prolyl cis-t 100.0 3E-28 6.5E-33 197.4 13.6 126 22-162 81-206 (206)
4 KOG0543 FKBP-type peptidyl-pro 100.0 5.5E-27 1.2E-31 202.3 19.0 159 37-204 67-230 (397)
5 KOG0549 FKBP-type peptidyl-pro 99.9 9.2E-27 2E-31 181.2 13.0 112 51-166 67-180 (188)
6 PRK10902 FKBP-type peptidyl-pr 99.9 8.2E-26 1.8E-30 189.5 14.3 130 21-166 124-253 (269)
7 KOG0552 FKBP-type peptidyl-pro 99.9 3.6E-25 7.8E-30 179.4 14.0 110 48-162 116-226 (226)
8 TIGR03516 ppisom_GldI peptidyl 99.9 5E-25 1.1E-29 174.7 14.2 114 44-162 61-176 (177)
9 PF00254 FKBP_C: FKBP-type pep 99.9 1.4E-21 3E-26 139.4 12.0 91 66-159 4-94 (94)
10 KOG0545 Aryl-hydrocarbon recep 99.7 6.9E-19 1.5E-23 143.8 3.1 154 49-203 7-199 (329)
11 PRK15095 FKBP-type peptidyl-pr 99.7 5.3E-17 1.1E-21 126.4 9.2 72 66-139 4-75 (156)
12 COG1047 SlpA FKBP-type peptidy 99.6 5.9E-15 1.3E-19 115.4 10.8 72 66-139 2-73 (174)
13 PRK10737 FKBP-type peptidyl-pr 99.6 1.6E-14 3.5E-19 115.8 9.1 71 66-139 2-72 (196)
14 KOG0543 FKBP-type peptidyl-pro 99.3 5.9E-12 1.3E-16 109.5 6.3 81 60-159 1-82 (397)
15 TIGR00115 tig trigger factor. 99.0 3.1E-09 6.7E-14 94.6 12.2 88 66-165 146-233 (408)
16 PRK01490 tig trigger factor; P 98.9 1.1E-08 2.3E-13 91.9 12.2 87 66-164 157-243 (435)
17 COG0544 Tig FKBP-type peptidyl 98.7 1.3E-07 2.8E-12 84.9 10.6 94 67-176 158-251 (441)
18 KOG0549 FKBP-type peptidyl-pro 97.7 3.3E-05 7.2E-10 60.9 3.5 58 100-164 1-58 (188)
19 TIGR00990 3a0801s09 mitochondr 92.7 0.12 2.7E-06 48.2 3.9 56 144-203 93-148 (615)
20 KOG0547 Translocase of outer m 89.2 0.31 6.8E-06 44.4 2.8 34 170-203 103-136 (606)
21 KOG4234 TPR repeat-containing 86.2 0.56 1.2E-05 38.4 2.3 26 178-203 91-116 (271)
22 KOG4648 Uncharacterized conser 86.0 0.63 1.4E-05 41.0 2.6 29 175-203 90-118 (536)
23 KOG0553 TPR repeat-containing 73.7 3.7 8E-05 35.3 3.2 33 172-204 71-103 (304)
24 KOG0551 Hsp90 co-chaperone CNS 71.2 3.7 8E-05 36.0 2.7 22 181-202 80-101 (390)
25 PF01346 FKBP_N: Domain amino 62.7 3.1 6.8E-05 30.4 0.6 29 21-58 96-124 (124)
26 PF01272 GreA_GreB: Transcript 48.1 44 0.00095 22.3 4.3 24 108-131 42-65 (77)
27 PF09122 DUF1930: Domain of un 38.3 49 0.0011 21.7 3.1 22 110-131 35-56 (68)
28 PRK05892 nucleoside diphosphat 37.3 1.9E+02 0.0042 22.3 7.0 24 108-131 121-144 (158)
29 PRK00226 greA transcription el 36.3 51 0.0011 25.3 3.6 24 108-131 122-145 (157)
30 TIGR01462 greA transcription e 35.7 1.2E+02 0.0025 23.1 5.5 24 108-131 117-140 (151)
31 KOG0548 Molecular co-chaperone 32.1 29 0.00064 32.2 1.8 24 181-204 357-380 (539)
32 PRK05753 nucleoside diphosphat 29.9 1.4E+02 0.0031 22.4 5.1 24 108-131 91-114 (137)
33 PF07719 TPR_2: Tetratricopept 23.6 91 0.002 16.2 2.3 19 185-203 4-22 (34)
34 PF11889 DUF3409: Domain of un 23.4 77 0.0017 20.0 2.0 22 38-63 33-54 (56)
35 PF13838 Clathrin_H_link: Clat 22.8 48 0.001 21.9 1.1 18 186-203 10-27 (66)
36 PF13414 TPR_11: TPR repeat; P 20.4 67 0.0015 20.0 1.5 22 182-203 3-24 (69)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-33 Score=220.73 Aligned_cols=128 Identities=29% Similarity=0.452 Sum_probs=117.1
Q ss_pred hhhhhhhccccCCCCCCCCCCCCCCcceEEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeEEeccccCCccce
Q 028665 20 EIVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLE 99 (205)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~gi~~~vl~~G~G~~p~~gd~V~v~y~~~~~~~G~~~~st~~~~~p~~ 99 (205)
++..+...|+..+. ....+.++++||+|++++.|.|..|..++.|.+||+|++.| |++|||++.+++|+.
T Consensus 78 ~~~~~~~~f~~~~~---------k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~-G~vFDsS~~rg~p~~ 147 (205)
T COG0545 78 ANAAEGKAFLEKNA---------KEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLID-GTVFDSSYDRGQPAE 147 (205)
T ss_pred HhHHhHHHHHhhhc---------ccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCC-CCccccccccCCCce
Confidence 44455566777766 67788999999999999999999999999999999999998 999999999999999
Q ss_pred eecCCcccccHHHHHHHcCCCCCcEEEEEEeCCCCcCCCCCCCCCCCCCCceEEEEEEEEEee
Q 028665 100 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162 (205)
Q Consensus 100 f~lg~~~~~i~gl~~al~~mk~Ge~~~~~ip~~~ayg~~g~~~~~~Ip~~~~lvf~veL~~v~ 162 (205)
|.|| ++|+||.++|.+|++|++|+++|||++|||.+|. ++.||||++|+|+|+|++|.
T Consensus 148 f~l~---~vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~--~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 148 FPLG---GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGV--PGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred eecC---CeeehHHHHHhhCCCCceEEEEeCchhccCcCCC--CCCCCCCCeEEEEEEEEecC
Confidence 9999 5999999999999999999999999999999997 35599999999999999973
No 2
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-30 Score=180.89 Aligned_cols=106 Identities=32% Similarity=0.537 Sum_probs=101.2
Q ss_pred cEEEEEEecCCCC-CCCCCCEEEEEEEEEEcCCCeEEeccccCCccceeecCCcccccHHHHHHHcCCCCCcEEEEEEeC
Q 028665 53 KVTKQIIKEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGW 131 (205)
Q Consensus 53 gi~~~vl~~G~G~-~p~~gd~V~v~y~~~~~~~G~~~~st~~~~~p~~f~lg~~~~~i~gl~~al~~mk~Ge~~~~~ip~ 131 (205)
|+.+++|..|+|. .|+.|++|++||++.+.| |+.|||+.+++.|+.|.+|.+. +|.||++++..|.+||++++.|.|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~d-G~kfDSs~dr~kPfkf~IGkge-VIkGwdegv~qmsvGekakLti~p 79 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQD-GKKFDSSRDRGKPFKFKIGKGE-VIKGWDEGVAQMSVGEKAKLTISP 79 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecC-CcEeecccccCCCeeEEecCcc-eeechhhcchhccccccceeeecc
Confidence 6899999999996 899999999999999998 9999999999999999999995 999999999999999999999999
Q ss_pred CCCcCCCCCCCCCCCCCCceEEEEEEEEEee
Q 028665 132 ELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162 (205)
Q Consensus 132 ~~ayg~~g~~~~~~Ip~~~~lvf~veL~~v~ 162 (205)
.+|||..|. +..||||++|+|+|||+++.
T Consensus 80 d~aYG~~G~--p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 80 DYAYGPRGH--PGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred ccccCCCCC--CCccCCCcEEEEEEEEEecC
Confidence 999999996 57899999999999999873
No 3
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.96 E-value=3e-28 Score=197.37 Aligned_cols=126 Identities=21% Similarity=0.380 Sum_probs=115.0
Q ss_pred hhhhhccccCCCCCCCCCCCCCCcceEEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeEEeccccCCccceee
Q 028665 22 VTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMV 101 (205)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~gi~~~vl~~G~G~~p~~gd~V~v~y~~~~~~~G~~~~st~~~~~p~~f~ 101 (205)
......|+..+. ...+|..+++|++|+|+++|+|..|..+|.|.|||++++.+ |++|+|++.++.|+.|.
T Consensus 81 ~~~~~~fl~~~~---------k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~d-G~vfdss~~~g~P~~f~ 150 (206)
T PRK11570 81 AAEGVKFLEENA---------KKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLID-GTVFDSSVARGEPAEFP 150 (206)
T ss_pred HHHHHHHHHHhh---------hcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECC-CCEEEeccCCCCCeEEE
Confidence 334566777777 56788999999999999999999999999999999999987 99999999888999999
Q ss_pred cCCcccccHHHHHHHcCCCCCcEEEEEEeCCCCcCCCCCCCCCCCCCCceEEEEEEEEEee
Q 028665 102 LGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162 (205)
Q Consensus 102 lg~~~~~i~gl~~al~~mk~Ge~~~~~ip~~~ayg~~g~~~~~~Ip~~~~lvf~veL~~v~ 162 (205)
++ ++|+||+++|.+|++|++++|+||++++||..|. .+.|||+++|+|+|+|++|.
T Consensus 151 l~---~vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~g~--~~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 151 VN---GVIPGWIEALTLMPVGSKWELTIPHELAYGERGA--GASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred ee---chhhHHHHHHcCCCCCCEEEEEECHHHcCCCCCC--CCCcCCCCeEEEEEEEEEEC
Confidence 97 5899999999999999999999999999999987 36799999999999999983
No 4
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.5e-27 Score=202.31 Aligned_cols=159 Identities=36% Similarity=0.537 Sum_probs=136.2
Q ss_pred CCCCCCCCcceE--EeCCcEEEEEEecCCC--CCCCCCCEEEEEEEEEEcCCCeEEeccccCCccceeecCCcccccHHH
Q 028665 37 GDGPPKVDSEVE--VLHEKVTKQIIKEGHG--QKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGL 112 (205)
Q Consensus 37 ~~~~p~~~~~~~--~~~~gi~~~vl~~G~G--~~p~~gd~V~v~y~~~~~~~G~~~~st~~~~~p~~f~lg~~~~~i~gl 112 (205)
..+|++.+..+. +.+.+|.++|+++|.| ..|..|..|.|||.+++.+ + +|+++.. .+.|.+|.+..+|.||
T Consensus 67 p~ip~~a~l~fe~el~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~-~-~f~~~~~---~fe~~~Ge~~~vi~Gl 141 (397)
T KOG0543|consen 67 PKIPSNATLLFEVELLDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELED-G-VFDQREL---RFEFGEGEDIDVIEGL 141 (397)
T ss_pred CCCCCCcceeeeecccCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECC-c-ceecccc---ceEEecCCccchhHHH
Confidence 445566665543 3499999999999999 4899999999999999987 4 7776532 4788888732499999
Q ss_pred HHHHcCCCCCcEEEEEEeCCCCcCCCCCCCCCCCCCCceEEEEEEEEEee-eCCCCCcCCCCCHHHHHHHHHHHHHhhhH
Q 028665 113 AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD-ETKEGKARSDMTVEERIGAADRRKMDGNA 191 (205)
Q Consensus 113 ~~al~~mk~Ge~~~~~ip~~~ayg~~g~~~~~~Ip~~~~lvf~veL~~v~-~~~~~~~~~~~~~ee~~~~a~~~k~~g~~ 191 (205)
+.||..|++||.+.|+|+|+++||..+.. ++.||||++|.|+|+|++|. +..+ .|.|..+|++++|.++|+.||.
T Consensus 142 e~al~~M~~GE~a~v~i~~~YayG~~~~~-~p~IPPnA~l~yEVeL~~f~~~~~~---s~~~~~~e~l~~A~~~ke~Gn~ 217 (397)
T KOG0543|consen 142 EIALRMMKVGEVALVTIDPKYAYGEEGGE-PPLIPPNATLLYEVELLDFELKEDE---SWKMFAEERLEAADRKKERGNV 217 (397)
T ss_pred HHHHHhcCccceEEEEeCcccccCCCCCC-CCCCCCCceEEEEEEEEeeecCccc---ccccchHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999955432 57899999999999999999 5555 8999999999999999999999
Q ss_pred HHhhhhHHHHhcC
Q 028665 192 LFKEEKLEEAMQQ 204 (205)
Q Consensus 192 ~~~~~~~~~A~~~ 204 (205)
+||+++|..|+++
T Consensus 218 ~fK~gk~~~A~~~ 230 (397)
T KOG0543|consen 218 LFKEGKFKLAKKR 230 (397)
T ss_pred HHhhchHHHHHHH
Confidence 9999999999863
No 5
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.2e-27 Score=181.23 Aligned_cols=112 Identities=26% Similarity=0.456 Sum_probs=100.9
Q ss_pred CCcEEEEEEecCC--CCCCCCCCEEEEEEEEEEcCCCeEEeccccCCccceeecCCcccccHHHHHHHcCCCCCcEEEEE
Q 028665 51 HEKVTKQIIKEGH--GQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLH 128 (205)
Q Consensus 51 ~~gi~~~vl~~G~--G~~p~~gd~V~v~y~~~~~~~G~~~~st~~~~~p~~f~lg~~~~~i~gl~~al~~mk~Ge~~~~~ 128 (205)
.+.+...+++.-. ..+.+.||.+.+||++.+.| |++||||+.++.|++|+||.+ ++|+||+.+|.+||+||++++.
T Consensus 67 ~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leD-Gt~fdSS~~rg~P~~f~LG~g-qVIkG~Dqgl~gMCvGEkRkl~ 144 (188)
T KOG0549|consen 67 DEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLED-GTKFDSSYSRGAPFTFTLGTG-QVIKGWDQGLLGMCVGEKRKLI 144 (188)
T ss_pred CCceeEEEEECCccccccccCCCEEEEEEEEEecC-CCEEeeeccCCCCEEEEeCCC-ceeccHhHHhhhhCcccceEEe
Confidence 4677777777632 34678999999999998888 999999999999999999999 5999999999999999999999
Q ss_pred EeCCCCcCCCCCCCCCCCCCCceEEEEEEEEEeeeCCC
Q 028665 129 VGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 166 (205)
Q Consensus 129 ip~~~ayg~~g~~~~~~Ip~~~~lvf~veL~~v~~~~~ 166 (205)
|||+++||++|. ++.||++++|+|+|+|+++...+.
T Consensus 145 IPp~LgYG~~G~--~~~IP~~A~LiFdiELv~i~~~~~ 180 (188)
T KOG0549|consen 145 IPPHLGYGERGA--PPKIPGDAVLIFDIELVKIERGPP 180 (188)
T ss_pred cCccccCccCCC--CCCCCCCeeEEEEEEEEEeecCCC
Confidence 999999999998 466999999999999999987654
No 6
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.94 E-value=8.2e-26 Score=189.50 Aligned_cols=130 Identities=22% Similarity=0.406 Sum_probs=117.6
Q ss_pred hhhhhhccccCCCCCCCCCCCCCCcceEEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeEEeccccCCcccee
Q 028665 21 IVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEM 100 (205)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~gi~~~vl~~G~G~~p~~gd~V~v~y~~~~~~~G~~~~st~~~~~p~~f 100 (205)
+......|+..+. ...+|..+++||+|+|+++|+|..|..||.|.|||++++.+ |++|++++.++.|+.|
T Consensus 124 ~~~~~~~fl~~~~---------k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~d-G~vfdss~~~g~p~~f 193 (269)
T PRK10902 124 NEAKGKKYREKFA---------KEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLID-GKEFDNSYTRGEPLSF 193 (269)
T ss_pred HHHHHHHHHHHhc---------cCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCC-CCEeeccccCCCceEE
Confidence 3345667888888 56678899999999999999999999999999999999987 9999999988899999
Q ss_pred ecCCcccccHHHHHHHcCCCCCcEEEEEEeCCCCcCCCCCCCCCCCCCCceEEEEEEEEEeeeCCC
Q 028665 101 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 166 (205)
Q Consensus 101 ~lg~~~~~i~gl~~al~~mk~Ge~~~~~ip~~~ayg~~g~~~~~~Ip~~~~lvf~veL~~v~~~~~ 166 (205)
.++ ++++||+++|.+|++|++++|+||+.++||..|. +.||||++|+|+|+|++|...+.
T Consensus 194 ~l~---~vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~---~gIppns~LvfeVeLl~V~~~~~ 253 (269)
T PRK10902 194 RLD---GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV---PGIPANSTLVFDVELLDVKPAPK 253 (269)
T ss_pred ecC---CcchHHHHHHhcCCCCcEEEEEECchhhCCCCCC---CCCCCCCcEEEEEEEEEeccCcc
Confidence 997 5999999999999999999999999999999986 57999999999999999986554
No 7
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.6e-25 Score=179.37 Aligned_cols=110 Identities=26% Similarity=0.481 Sum_probs=103.0
Q ss_pred EEeCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCCeEEeccccCCccce-eecCCcccccHHHHHHHcCCCCCcEEE
Q 028665 48 EVLHEKVTKQIIKEGHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLE-MVLGKEKKEMTGLAIGVSSMKAGEHAL 126 (205)
Q Consensus 48 ~~~~~gi~~~vl~~G~G~~p~~gd~V~v~y~~~~~~~G~~~~st~~~~~p~~-f~lg~~~~~i~gl~~al~~mk~Ge~~~ 126 (205)
.++++||+|+-++.|+|+.|..|+.|.+||.+++...|++|++++. ++|+. |.+|.+. +|+||+.++.+|++|.+++
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-~kp~~~f~lg~g~-VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFG-GKPFKLFRLGSGE-VIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccC-CCCccccccCCCC-CCchHHHhhhhhccCCeeE
Confidence 4789999999999999999999999999999999966999999875 46888 9999995 9999999999999999999
Q ss_pred EEEeCCCCcCCCCCCCCCCCCCCceEEEEEEEEEee
Q 028665 127 LHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162 (205)
Q Consensus 127 ~~ip~~~ayg~~g~~~~~~Ip~~~~lvf~veL~~v~ 162 (205)
|+|||++|||..|. +.||||++|+|+|+|++|.
T Consensus 194 viIPp~lgYg~~g~---~~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 194 VIIPPELGYGKKGV---PEIPPNSTLVFDVELLSVK 226 (226)
T ss_pred EEeCccccccccCc---CcCCCCCcEEEEEEEEecC
Confidence 99999999999997 6899999999999999873
No 8
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.93 E-value=5e-25 Score=174.65 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=103.0
Q ss_pred CcceEEeCCcEEEEEEec--CCCCCCCCCCEEEEEEEEEEcCCCeEEeccccCCccceeecCCcccccHHHHHHHcCCCC
Q 028665 44 DSEVEVLHEKVTKQIIKE--GHGQKPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKA 121 (205)
Q Consensus 44 ~~~~~~~~~gi~~~vl~~--G~G~~p~~gd~V~v~y~~~~~~~G~~~~st~~~~~p~~f~lg~~~~~i~gl~~al~~mk~ 121 (205)
...+..+++|++|.++.. |+|..|..||.|.+||++++.+ |++|++++.. .|+.|.+|.+. +++||+++|.+|++
T Consensus 61 ~~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~d-G~v~~ss~~~-~P~~f~vg~~~-vi~Gl~e~L~~Mk~ 137 (177)
T TIGR03516 61 IVKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALD-GDVIYSEEEL-GPQTYKVDQQD-LFSGLRDGLKLMKE 137 (177)
T ss_pred CCCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCC-CCEEEeCCCC-CCEEEEeCCcc-hhHHHHHHHcCCCC
Confidence 345578899999999976 6667899999999999999998 9999999764 59999999884 99999999999999
Q ss_pred CcEEEEEEeCCCCcCCCCCCCCCCCCCCceEEEEEEEEEee
Q 028665 122 GEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 162 (205)
Q Consensus 122 Ge~~~~~ip~~~ayg~~g~~~~~~Ip~~~~lvf~veL~~v~ 162 (205)
|++++|+|||++|||..|. .+.||||++|+|+|+|++|.
T Consensus 138 Ge~~~~~iP~~~AYG~~g~--~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 138 GETATFLFPSHKAYGYYGD--QNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred CCEEEEEECHHHcCCCCCC--CCCcCcCCcEEEEEEEEEec
Confidence 9999999999999999986 36799999999999999985
No 9
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.87 E-value=1.4e-21 Score=139.41 Aligned_cols=91 Identities=33% Similarity=0.572 Sum_probs=84.6
Q ss_pred CCCCCCEEEEEEEEEEcCCCeEEeccccCCccceeecCCcccccHHHHHHHcCCCCCcEEEEEEeCCCCcCCCCCCCCCC
Q 028665 66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145 (205)
Q Consensus 66 ~p~~gd~V~v~y~~~~~~~G~~~~st~~~~~p~~f~lg~~~~~i~gl~~al~~mk~Ge~~~~~ip~~~ayg~~g~~~~~~ 145 (205)
+|+.||.|.|||++++.+ |++|++++..+.|+.|.+|.+. +++||+++|.+|++|++++|+||++++||..+... ..
T Consensus 4 ~~~~gd~V~i~y~~~~~~-g~~~~~~~~~~~~~~~~~g~~~-~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~-~~ 80 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLED-GKVFDSSYQEGEPFEFRLGSGQ-VIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP-PK 80 (94)
T ss_dssp SBSTTSEEEEEEEEEETT-SEEEEETTTTTSEEEEETTSSS-SSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT-TT
T ss_pred cCCCCCEEEEEEEEEECC-CcEEEEeeecCcceeeeeccCc-cccchhhhcccccCCCEeeeEeCChhhcCccccCC-CC
Confidence 689999999999999985 9999999888889999999995 99999999999999999999999999999998642 35
Q ss_pred CCCCceEEEEEEEE
Q 028665 146 VSPMADLVYEVVLI 159 (205)
Q Consensus 146 Ip~~~~lvf~veL~ 159 (205)
||++++|+|+|+|+
T Consensus 81 ip~~~~l~f~Iell 94 (94)
T PF00254_consen 81 IPPNSTLVFEIELL 94 (94)
T ss_dssp BTTTSEEEEEEEEE
T ss_pred cCCCCeEEEEEEEC
Confidence 99999999999996
No 10
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=6.9e-19 Score=143.79 Aligned_cols=154 Identities=23% Similarity=0.355 Sum_probs=126.4
Q ss_pred EeCCcEEEEEEecCCCCCCC--CCCEEEEEEEEEEcCC-CeEEeccccCCccceeecCCcccccHHHHHHHcCCCCCcEE
Q 028665 49 VLHEKVTKQIIKEGHGQKPS--KYSTCFLHYRAWAEST-RHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHA 125 (205)
Q Consensus 49 ~~~~gi~~~vl~~G~G~~p~--~gd~V~v~y~~~~~~~-G~~~~st~~~~~p~~f~lg~~~~~i~gl~~al~~mk~Ge~~ 125 (205)
+...||.++||..|+|..|. +|..|+|||.....++ ++++|+|+..|+|+.+.+|.-. -++-|+.+|..|+++|.+
T Consensus 7 l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkF-kL~VwE~il~tM~v~Eva 85 (329)
T KOG0545|consen 7 LNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKF-KLEVWEIILTTMRVHEVA 85 (329)
T ss_pred ccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeecccc-ccHHHHHHHHHHhhhhHH
Confidence 34579999999999998555 7999999999876654 7899999999999999999987 689999999999999999
Q ss_pred EEEEeCCCC--c------------CCCC-------CCC-----CCCC---------CCCceEEEEEEEEEeeeCCCCC-c
Q 028665 126 LLHVGWELG--Y------------GKEG-------SFS-----FPNV---------SPMADLVYEVVLIGFDETKEGK-A 169 (205)
Q Consensus 126 ~~~ip~~~a--y------------g~~g-------~~~-----~~~I---------p~~~~lvf~veL~~v~~~~~~~-~ 169 (205)
.|++....- | |... ++. ...+ --.++|+|.|+|+.|..|..|+ +
T Consensus 86 qF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e 165 (329)
T KOG0545|consen 86 QFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRE 165 (329)
T ss_pred HhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccc
Confidence 998865432 1 2110 000 0001 1345799999999999998875 4
Q ss_pred CCCCCHHHHHHHHHHHHHhhhHHHhhhhHHHHhc
Q 028665 170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQ 203 (205)
Q Consensus 170 ~~~~~~ee~~~~a~~~k~~g~~~~~~~~~~~A~~ 203 (205)
+|.|+.+||+.++..++++||.+|+.|.|++|..
T Consensus 166 ~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~ 199 (329)
T KOG0545|consen 166 TWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASS 199 (329)
T ss_pred cccCCchHhhhhhHHHHHhhhhhhhhccHHHHHH
Confidence 9999999999999999999999999999999974
No 11
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.71 E-value=5.3e-17 Score=126.41 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=67.0
Q ss_pred CCCCCCEEEEEEEEEEcCCCeEEeccccCCccceeecCCcccccHHHHHHHcCCCCCcEEEEEEeCCCCcCCCC
Q 028665 66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG 139 (205)
Q Consensus 66 ~p~~gd~V~v~y~~~~~~~G~~~~st~~~~~p~~f~lg~~~~~i~gl~~al~~mk~Ge~~~~~ip~~~ayg~~g 139 (205)
.++.|+.|.+||++++.+ |++|+||+..+.|+.|.+|.+. +++||+++|.+|++|+++.|.|||+.|||...
T Consensus 4 ~i~~~~~V~v~Y~~~~~d-G~v~dst~~~~~P~~f~~G~g~-vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDD-GSTAESTRNNGKPALFRLGDGS-LSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCC-CCEEEECCCCCCCEEEEeCCCC-ccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 578899999999999977 9999999877889999999994 99999999999999999999999999998754
No 12
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=5.9e-15 Score=115.42 Aligned_cols=72 Identities=24% Similarity=0.276 Sum_probs=66.9
Q ss_pred CCCCCCEEEEEEEEEEcCCCeEEeccccCCccceeecCCcccccHHHHHHHcCCCCCcEEEEEEeCCCCcCCCC
Q 028665 66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG 139 (205)
Q Consensus 66 ~p~~gd~V~v~y~~~~~~~G~~~~st~~~~~p~~f~lg~~~~~i~gl~~al~~mk~Ge~~~~~ip~~~ayg~~g 139 (205)
.+.+||.|.+||++++.+ |++|++|.....|+.|.+|.+. +++||++||.+|.+|++..|.|||+.|||...
T Consensus 2 ~i~k~~~V~i~Y~~~~~d-g~v~Dtt~e~~~P~~~i~G~g~-li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 2 KIEKGDVVSLHYTLKVED-GEVVDTTDENYGPLTFIVGAGQ-LIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred cccCCCEEEEEEEEEecC-CcEEEcccccCCCeEEEecCCC-cchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 467899999999999999 9999999876679999999995 99999999999999999999999999998854
No 13
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.56 E-value=1.6e-14 Score=115.82 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=64.9
Q ss_pred CCCCCCEEEEEEEEEEcCCCeEEeccccCCccceeecCCcccccHHHHHHHcCCCCCcEEEEEEeCCCCcCCCC
Q 028665 66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG 139 (205)
Q Consensus 66 ~p~~gd~V~v~y~~~~~~~G~~~~st~~~~~p~~f~lg~~~~~i~gl~~al~~mk~Ge~~~~~ip~~~ayg~~g 139 (205)
++++++.|+|+|++++.+ |++|++|+. ..|+.|.+|.+. ++|+|+++|.+|.+|++..|.|||+.|||...
T Consensus 2 kI~~~~vV~l~Y~l~~~d-G~v~dst~~-~~Pl~~~~G~g~-lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTED-GVLVDESPV-SAPLDYLHGHGS-LISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred ccCCCCEEEEEEEEEeCC-CCEEEecCC-CCCeEEEeCCCc-chHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 357899999999999987 999999965 579999999995 99999999999999999999999999998754
No 14
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.9e-12 Score=109.46 Aligned_cols=81 Identities=35% Similarity=0.565 Sum_probs=73.9
Q ss_pred ecCCCC-CCCCCCEEEEEEEEEEcCCCeEEeccccCCccceeecCCcccccHHHHHHHcCCCCCcEEEEEEeCCCCcCCC
Q 028665 60 KEGHGQ-KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKE 138 (205)
Q Consensus 60 ~~G~G~-~p~~gd~V~v~y~~~~~~~G~~~~st~~~~~p~~f~lg~~~~~i~gl~~al~~mk~Ge~~~~~ip~~~ayg~~ 138 (205)
++|.|. .|..||.|.+||++++.| |+.|+||.+ +.|+.|.+|.+. +|.+|..++..|+. |..
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~d-gt~fdss~d-~~~~~~~lg~g~-vi~~~~~gv~tm~~--------------g~~ 63 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLD-GTKFDSSRD-GDPFKFDLGKGS-VIKGWDLGVATMKK--------------GEA 63 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecC-CeecccccC-CCceeeecCCCc-cccccccccccccc--------------ccc
Confidence 478887 899999999999999998 999999988 889999999995 99999999999998 555
Q ss_pred CCCCCCCCCCCceEEEEEEEE
Q 028665 139 GSFSFPNVSPMADLVYEVVLI 159 (205)
Q Consensus 139 g~~~~~~Ip~~~~lvf~veL~ 159 (205)
+. ++.||++++|.|+|+|+
T Consensus 64 ~~--pp~ip~~a~l~fe~el~ 82 (397)
T KOG0543|consen 64 GS--PPKIPSNATLLFEVELL 82 (397)
T ss_pred CC--CCCCCCCcceeeeeccc
Confidence 55 68899999999999985
No 15
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.03 E-value=3.1e-09 Score=94.59 Aligned_cols=88 Identities=17% Similarity=0.290 Sum_probs=76.5
Q ss_pred CCCCCCEEEEEEEEEEcCCCeEEeccccCCccceeecCCcccccHHHHHHHcCCCCCcEEEEEEeCCCCcCCCCCCCCCC
Q 028665 66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145 (205)
Q Consensus 66 ~p~~gd~V~v~y~~~~~~~G~~~~st~~~~~p~~f~lg~~~~~i~gl~~al~~mk~Ge~~~~~ip~~~ayg~~g~~~~~~ 145 (205)
.+..||.|.++|+++. + |..|+++. ..++.|.+|.+. +++||+++|.+|++|+++.|.+++...|+..+.
T Consensus 146 ~~~~gD~V~v~~~~~~-d-g~~~~~~~--~~~~~~~lg~~~-~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~----- 215 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-D-GEAFEGGK--AENFSLELGSGQ-FIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL----- 215 (408)
T ss_pred ccCCCCEEEEEEEEEE-C-CEECcCCC--CCCeEEEECCCC-cchhHHHHhCCCCCCCeeEEEecCccccCcccC-----
Confidence 4678999999999976 4 88888763 468999999995 999999999999999999999998888876553
Q ss_pred CCCCceEEEEEEEEEeeeCC
Q 028665 146 VSPMADLVYEVVLIGFDETK 165 (205)
Q Consensus 146 Ip~~~~lvf~veL~~v~~~~ 165 (205)
+|.++.|.|+|.+|....
T Consensus 216 --~gk~~~f~v~i~~I~~~~ 233 (408)
T TIGR00115 216 --AGKEATFKVTVKEVKEKE 233 (408)
T ss_pred --CCCeEEEEEEEEEeccCC
Confidence 689999999999998653
No 16
>PRK01490 tig trigger factor; Provisional
Probab=98.94 E-value=1.1e-08 Score=91.92 Aligned_cols=87 Identities=16% Similarity=0.263 Sum_probs=75.6
Q ss_pred CCCCCCEEEEEEEEEEcCCCeEEeccccCCccceeecCCcccccHHHHHHHcCCCCCcEEEEEEeCCCCcCCCCCCCCCC
Q 028665 66 KPSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPN 145 (205)
Q Consensus 66 ~p~~gd~V~v~y~~~~~~~G~~~~st~~~~~p~~f~lg~~~~~i~gl~~al~~mk~Ge~~~~~ip~~~ayg~~g~~~~~~ 145 (205)
.+..||.|+++|++.. + |+.|+++. ..++.|.+|.+. +++||+++|.+|++|+++.|.++....|+....
T Consensus 157 ~~~~gD~V~vd~~~~~-~-g~~~~~~~--~~~~~~~lg~~~-~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l----- 226 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-D-GEEFEGGK--AEDFSLELGSGR-FIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL----- 226 (435)
T ss_pred cCCCCCEEEEEEEEEE-C-CEECcCCC--CCceEEEEcCCC-cchhHHHHhCCCCCCCeeEEEecCccccccccC-----
Confidence 4689999999999997 4 88888763 458999999995 999999999999999999999988888876543
Q ss_pred CCCCceEEEEEEEEEeeeC
Q 028665 146 VSPMADLVYEVVLIGFDET 164 (205)
Q Consensus 146 Ip~~~~lvf~veL~~v~~~ 164 (205)
+|.++.|.|+|.+|...
T Consensus 227 --agk~~~f~v~v~~V~~~ 243 (435)
T PRK01490 227 --AGKEATFKVTVKEVKEK 243 (435)
T ss_pred --CCCeEEEEEEEEEeccC
Confidence 68899999999999864
No 17
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.3e-07 Score=84.88 Aligned_cols=94 Identities=15% Similarity=0.253 Sum_probs=76.8
Q ss_pred CCCCCEEEEEEEEEEcCCCeEEeccccCCccceeecCCcccccHHHHHHHcCCCCCcEEEEEEeCCCCcCCCCCCCCCCC
Q 028665 67 PSKYSTCFLHYRAWAESTRHKFDDTWLEQQPLEMVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNV 146 (205)
Q Consensus 67 p~~gd~V~v~y~~~~~~~G~~~~st~~~~~p~~f~lg~~~~~i~gl~~al~~mk~Ge~~~~~ip~~~ayg~~g~~~~~~I 146 (205)
+..||.|+|+|.|+.. |..|.+.- ...+.|.||.+. +||||+.+|.||++|++..|.+.....|.....
T Consensus 158 a~~gD~v~IDf~g~iD--g~~fegg~--ae~~~l~lGs~~-fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------ 226 (441)
T COG0544 158 AENGDRVTIDFEGSVD--GEEFEGGK--AENFSLELGSGR-FIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------ 226 (441)
T ss_pred cccCCEEEEEEEEEEc--CeeccCcc--ccCeEEEEcCCC-chhhHHhhhccCcCCCeeEEEEEcccccchhHh------
Confidence 7889999999999653 77887763 356999999996 999999999999999999987777677766544
Q ss_pred CCCceEEEEEEEEEeeeCCCCCcCCCCCHH
Q 028665 147 SPMADLVYEVVLIGFDETKEGKARSDMTVE 176 (205)
Q Consensus 147 p~~~~lvf~veL~~v~~~~~~~~~~~~~~e 176 (205)
+|.+..|.|+|..|.... ..+++++
T Consensus 227 -aGK~a~F~V~vkeVk~~e----lpEldDE 251 (441)
T COG0544 227 -AGKEATFKVKVKEVKKRE----LPELDDE 251 (441)
T ss_pred -CCCceEEEEEEEEEeecC----CCCCCHH
Confidence 788899999999998754 3556554
No 18
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=3.3e-05 Score=60.90 Aligned_cols=58 Identities=22% Similarity=0.384 Sum_probs=46.3
Q ss_pred eecCCcccccHHHHHHHcCCCCCcEEEEEEeCCCCcCCCCCCCCCCCCCCceEEEEEEEEEeeeC
Q 028665 100 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET 164 (205)
Q Consensus 100 f~lg~~~~~i~gl~~al~~mk~Ge~~~~~ip~~~ayg~~g~~~~~~Ip~~~~lvf~veL~~v~~~ 164 (205)
|++|.+. +|+|++.+|.+|+.|+++++++||+++||..+. ..-..++|.+.++.+...
T Consensus 1 ~~~g~~~-vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~------~~~~~~~~~~~l~~~~~~ 58 (188)
T KOG0549|consen 1 FTLGQGF-VIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR------GDLNILVITILLVLLFRA 58 (188)
T ss_pred CcccceE-EecCHHHHhhhhhccccceeccCCccccccccc------ccccceEEEeeeeehhhh
Confidence 4678885 999999999999999999999999999996553 223346777777766543
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.74 E-value=0.12 Score=48.25 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=46.4
Q ss_pred CCCCCCceEEEEEEEEEeeeCCCCCcCCCCCHHHHHHHHHHHHHhhhHHHhhhhHHHHhc
Q 028665 144 PNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQ 203 (205)
Q Consensus 144 ~~Ip~~~~lvf~veL~~v~~~~~~~~~~~~~~ee~~~~a~~~k~~g~~~~~~~~~~~A~~ 203 (205)
..+|++.++.+..++..+.... .|.|+++++.+.+..++..||.+|+.|+|..|++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~ 148 (615)
T TIGR00990 93 STAPKNAPVEPADELPEIDESS----VANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIK 148 (615)
T ss_pred CCCCCCCCCCccccccccchhh----cccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3467777777777776665433 6999999999999999999999999999999975
No 20
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.25 E-value=0.31 Score=44.45 Aligned_cols=34 Identities=35% Similarity=0.562 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhhHHHhhhhHHHHhc
Q 028665 170 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQ 203 (205)
Q Consensus 170 ~~~~~~ee~~~~a~~~k~~g~~~~~~~~~~~A~~ 203 (205)
.-.|+.+++++.|..+|.+||.+|+.|+|+.|++
T Consensus 103 ~~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIk 136 (606)
T KOG0547|consen 103 KKAMLKEERLKYAAALKTKGNKFFRNKKYDEAIK 136 (606)
T ss_pred hhccChHHHHHHHHHHHhhhhhhhhcccHHHHHH
Confidence 4478899999999999999999999999999986
No 21
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.22 E-value=0.56 Score=38.38 Aligned_cols=26 Identities=46% Similarity=0.567 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhHHHhhhhHHHHhc
Q 028665 178 RIGAADRRKMDGNALFKEEKLEEAMQ 203 (205)
Q Consensus 178 ~~~~a~~~k~~g~~~~~~~~~~~A~~ 203 (205)
.++.+.++|.+||++|+.|.|+.|..
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~s 116 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANS 116 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHH
Confidence 37788899999999999999999865
No 22
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.98 E-value=0.63 Score=40.96 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhHHHHhc
Q 028665 175 VEERIGAADRRKMDGNALFKEEKLEEAMQ 203 (205)
Q Consensus 175 ~ee~~~~a~~~k~~g~~~~~~~~~~~A~~ 203 (205)
.++.+.....+|+.||.||+-|+|++|+.
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAID 118 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAID 118 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHH
Confidence 56788889999999999999999999974
No 23
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.74 E-value=3.7 Score=35.26 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHHhhhHHHhhhhHHHHhcC
Q 028665 172 DMTVEERIGAADRRKMDGNALFKEEKLEEAMQQ 204 (205)
Q Consensus 172 ~~~~ee~~~~a~~~k~~g~~~~~~~~~~~A~~~ 204 (205)
..+.+|-...|.++|.+||++.++++|+.|..|
T Consensus 71 ~~~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~k 103 (304)
T KOG0553|consen 71 ILTPEEDKALAESLKNEGNKLMKNKDYQEAVDK 103 (304)
T ss_pred ccChHhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 455558999999999999999999999999754
No 24
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.17 E-value=3.7 Score=35.98 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.8
Q ss_pred HHHHHHHhhhHHHhhhhHHHHh
Q 028665 181 AADRRKMDGNALFKEEKLEEAM 202 (205)
Q Consensus 181 ~a~~~k~~g~~~~~~~~~~~A~ 202 (205)
.|...|++||.||+.++|+.|.
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~ 101 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAV 101 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHH
Confidence 8889999999999999999986
No 25
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=62.70 E-value=3.1 Score=30.45 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=21.3
Q ss_pred hhhhhhccccCCCCCCCCCCCCCCcceEEeCCcEEEEE
Q 028665 21 IVTEDAAFVRGEPPQDGDGPPKVDSEVEVLHEKVTKQI 58 (205)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~gi~~~v 58 (205)
...+...|+..+. ...+|.+|+|||+|+|
T Consensus 96 ~~~~~~~fla~n~---------k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 96 NKAEGEAFLAENA---------KKEGVKTTESGLQYKV 124 (124)
T ss_dssp HHHHHHHHHHHHH---------TSTTEEE-TTS-EEEE
T ss_pred hHHHHHHHHHHHc---------CCCCCEECCCCCeeeC
Confidence 4456677777777 6679999999999987
No 26
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=48.09 E-value=44 Score=22.29 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=18.6
Q ss_pred ccHHHHHHHcCCCCCcEEEEEEeC
Q 028665 108 EMTGLAIGVSSMKAGEHALLHVGW 131 (205)
Q Consensus 108 ~i~gl~~al~~mk~Ge~~~~~ip~ 131 (205)
+...|-.||.+.++|+.+.+.+|.
T Consensus 42 ~~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 42 IDSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TTSHHHHHHTT-BTT-EEEEEETT
T ss_pred ecCHHHHHhcCCCCCCEEEEEeCC
Confidence 456799999999999999998854
No 27
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=38.29 E-value=49 Score=21.70 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=17.6
Q ss_pred HHHHHHHcCCCCCcEEEEEEeC
Q 028665 110 TGLAIGVSSMKAGEHALLHVGW 131 (205)
Q Consensus 110 ~gl~~al~~mk~Ge~~~~~ip~ 131 (205)
+-+..|+..|+.||++.++..+
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS 56 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKS 56 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETT
T ss_pred HHHHHHHHHhhcCceeEEEEec
Confidence 5688999999999999998855
No 28
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=37.31 E-value=1.9e+02 Score=22.28 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=20.1
Q ss_pred ccHHHHHHHcCCCCCcEEEEEEeC
Q 028665 108 EMTGLAIGVSSMKAGEHALLHVGW 131 (205)
Q Consensus 108 ~i~gl~~al~~mk~Ge~~~~~ip~ 131 (205)
+...|-.||.+-++|+.+.+.+|.
T Consensus 121 ~~SPlG~ALlGk~vGD~v~v~~p~ 144 (158)
T PRK05892 121 ADSPLGQALAGHQAGDTVTYSTPQ 144 (158)
T ss_pred cCCHHHHHHhCCCCCCEEEEEcCC
Confidence 445799999999999999987654
No 29
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=36.28 E-value=51 Score=25.30 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=20.3
Q ss_pred ccHHHHHHHcCCCCCcEEEEEEeC
Q 028665 108 EMTGLAIGVSSMKAGEHALLHVGW 131 (205)
Q Consensus 108 ~i~gl~~al~~mk~Ge~~~~~ip~ 131 (205)
+...+-.+|.+.++|+.+.+.+|.
T Consensus 122 ~~SPlG~aLlGk~~Gd~v~~~~p~ 145 (157)
T PRK00226 122 IESPIARALIGKKVGDTVEVTTPG 145 (157)
T ss_pred cCChHHHHHhCCCCCCEEEEEcCC
Confidence 455788999999999999987754
No 30
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=35.73 E-value=1.2e+02 Score=23.15 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=20.7
Q ss_pred ccHHHHHHHcCCCCCcEEEEEEeC
Q 028665 108 EMTGLAIGVSSMKAGEHALLHVGW 131 (205)
Q Consensus 108 ~i~gl~~al~~mk~Ge~~~~~ip~ 131 (205)
+...+-.||.+.++|+.+.+.+|.
T Consensus 117 ~~SPlG~ALlG~~~Gd~v~v~~p~ 140 (151)
T TIGR01462 117 IDSPLGKALIGKKVGDVVEVQTPK 140 (151)
T ss_pred CCCHHHHHHcCCCCCCEEEEEeCC
Confidence 556899999999999999987754
No 31
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=32.11 E-value=29 Score=32.15 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=20.0
Q ss_pred HHHHHHHhhhHHHhhhhHHHHhcC
Q 028665 181 AADRRKMDGNALFKEEKLEEAMQQ 204 (205)
Q Consensus 181 ~a~~~k~~g~~~~~~~~~~~A~~~ 204 (205)
.+...|..||++|+.++|..|+++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHH
Confidence 355678999999999999999763
No 32
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=29.95 E-value=1.4e+02 Score=22.35 Aligned_cols=24 Identities=4% Similarity=0.040 Sum_probs=20.0
Q ss_pred ccHHHHHHHcCCCCCcEEEEEEeC
Q 028665 108 EMTGLAIGVSSMKAGEHALLHVGW 131 (205)
Q Consensus 108 ~i~gl~~al~~mk~Ge~~~~~ip~ 131 (205)
+...+-.||.+.++|+.+.+..|.
T Consensus 91 i~SPlG~ALlG~~~Gd~v~v~~p~ 114 (137)
T PRK05753 91 VLAPVGAALLGLSVGQSIDWPLPG 114 (137)
T ss_pred ccCHHHHHHcCCCCCCEEEEECCC
Confidence 456799999999999999986543
No 33
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=23.61 E-value=91 Score=16.21 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=14.0
Q ss_pred HHHhhhHHHhhhhHHHHhc
Q 028665 185 RKMDGNALFKEEKLEEAMQ 203 (205)
Q Consensus 185 ~k~~g~~~~~~~~~~~A~~ 203 (205)
....|.-+++.|+|+.|+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~ 22 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIE 22 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHH
Confidence 4567888899999988864
No 34
>PF11889 DUF3409: Domain of unknown function (DUF3409); InterPro: IPR021824 This domain is functionally uncharacterised. This domain is found in viruses. This presumed domain is about 60 amino acids in length. This domain is found associated with PF00271 from PFAM, PF05550 from PFAM, PF05578 from PFAM. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=23.42 E-value=77 Score=19.98 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=15.4
Q ss_pred CCCCCCCcceEEeCCcEEEEEEecCC
Q 028665 38 DGPPKVDSEVEVLHEKVTKQIIKEGH 63 (205)
Q Consensus 38 ~~~p~~~~~~~~~~~gi~~~vl~~G~ 63 (205)
.-||.++ +.-.|+.|++-+.|.
T Consensus 33 tkPPdat----ivv~GvKYQVkKKGK 54 (56)
T PF11889_consen 33 TKPPDAT----IVVDGVKYQVKKKGK 54 (56)
T ss_pred cCCCCce----EEEeeeEEEEeeccc
Confidence 3455554 445899999998875
No 35
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=22.76 E-value=48 Score=21.92 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=13.6
Q ss_pred HHhhhHHHhhhhHHHHhc
Q 028665 186 KMDGNALFKEEKLEEAMQ 203 (205)
Q Consensus 186 k~~g~~~~~~~~~~~A~~ 203 (205)
...=|++|..|+|+.|++
T Consensus 10 ~~~F~~l~~~g~y~eAA~ 27 (66)
T PF13838_consen 10 VQQFNELFSQGQYEEAAK 27 (66)
T ss_dssp HHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHcCCHHHHHH
Confidence 344489999999999986
No 36
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=20.43 E-value=67 Score=20.01 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=15.6
Q ss_pred HHHHHHhhhHHHhhhhHHHHhc
Q 028665 182 ADRRKMDGNALFKEEKLEEAMQ 203 (205)
Q Consensus 182 a~~~k~~g~~~~~~~~~~~A~~ 203 (205)
+......|..++..++|..|+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~ 24 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIE 24 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHH
Confidence 4456677788888888877753
Done!