Citrus Sinensis ID: 028666

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MPFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDNRHNNLLNVSHGKCLADLCGALHCDFVMNSKSSRSKCNPAAVAKNRHLCESLANRCFPINQGPSASRLHELFLRQFCDAHKCPRKSQPFPKGGRKQPSVFYLSISILTLMLLPIFYLIVYLYQREMRGGTQELKRIPRVGRKAKPS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHcccccccEEEcccccccccHHHHHHHHHcccccccccccccHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEccEEccccccccccccccccHHHHHHHcccccccEcccccccEccHHHHHHHHHcccccccccccccHHHHHHcHcccHHEEccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcHcccccccc
Coil and Loop (DISEMBL)
MPFVEQVQYEISskcrlhpdndmfrdqeqhkihvdinewrcgyckksfraeKFLDqhfdnrhnnllnvshgKCLADLCGAlhcdfvmnskssrskcnpaavAKNRHLCESLanrcfpinqgpsasrLHELFLRQFcdahkcprksqpfpkggrkqpsvFYLSISILTLMLLPIFYLIVYLYQRemrggtqelkriprvgrkakps
Flexible Loop (DISEMBL)
MPFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDNRHNNLLNVSHGKCLADLCGALHCDFVMNSKSSRSKCNPAAVAKNRHLCESLANRCFPINQGPSASRLHELFLRQFCDAHKCPRksqpfpkggrkqpSVFYLSISILTLMLLPIFYLIVYLYQREmrggtqelkriprvgrkakps
Low Complexity Region (SEG)
MPFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDNRHNNLLNVSHGKCLADLCGALHCDFVMNSKSSRSKCNPAAVAKNRHLCESLANRCFPINQGPSASRLHELFLRQFCDAHKCPRKSQPFPKGGRKQPSVFYLSISILTLMLLPIFYLIVYLYQREMRGGTQELKRIPRVGRKAKPS
Disordered region (IsUnstruct)
****************************QHKIHVDINEWRCGYCKKSFRAEKFLDQHFDNRHNNLLNVSHGKCLADLCGALHCDFVMN**********AAVAKNRHLCESLANRCFPINQGPSASRLHELFLRQFCDAHKC***************SVFYLSISILTLMLLPIFYLIVYLYQRE*********************
Disordered Region (DISOPRED)
MPFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDNRHNNLLNVSHGKCLADLCGALHCDFVMN**************KNRHLCESLANRCF************ELFLRQFCDAHKC***************SVFYLSISILTLMLLPIFYLIVYLYQ***********************
Disordered Region (DISEMBL)
********YEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDNRHNNLLNVSHGKCLADLCGALHCDFVMNSK***********AKNRHLCESLANRCFPINQGPSASRLHELFLRQFCDAHKCPRK**********QPSVFYLSISILTLMLLPIFYLIVYLYQREMRGGTQELKRIPRVGRKAKPS
Disordered Region (DISPRO)
MPFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDNRHNNLLNVSHGKCLADLCGALHCDFVMNSKSSRSKCNPAAVAKNRHLCESLANRCFPINQGPSASRLHELFLRQFCDAHKCPRKSQPFPKGGRKQPSVFYLSISILTLMLLPIFYLIVYLYQREMR*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDNRHNNLLNVSHGKCLADLCGALHCDFVMNSKSSRSKCNPAAVAKNRHLCESLANRCFPINQGPSASRLHELFLRQFCDAHKCPRKSQPFPKGGRKQPSVFYLSISILTLMLLPIFYLIVYLYQREMRGGTQELKRIPRVGRKAKPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
297733623	276	unnamed protein product [Vitis vinifera]	1.0	0.742	0.780	7e-95
359491160	254	PREDICTED: uncharacterized protein LOC10	1.0	0.807	0.780	2e-94
224133834	266	predicted protein [Populus trichocarpa]	0.990	0.763	0.770	6e-94
226531528	276	uncharacterized protein LOC100275449 pre	1.0	0.742	0.707	2e-86
449440588	280	PREDICTED: uncharacterized protein LOC10	0.995	0.728	0.705	2e-86
238013592	275	unknown [Zea mays] gi|413916779|gb|AFW56	1.0	0.745	0.707	2e-86
242083250	276	hypothetical protein SORBIDRAFT_08g00828	1.0	0.742	0.707	2e-86
218186624	330	hypothetical protein OsI_37889 [Oryza sa	1.0	0.621	0.712	1e-85
296081316	409	unnamed protein product [Vitis vinifera]	1.0	0.501	0.707	1e-84
115487926	275	Os12g0233400 [Oryza sativa Japonica Grou	1.0	0.745	0.702	4e-84

>gi|297733623|emb|CBI14870.3| unnamed protein product [Vitis vinifera]

 Score =  352 bits (902), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 160/205 (78%), Positives = 179/205 (87%)

Query: 1   MPFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDN 60
           MPFVE+ QY+ISS C+LHPDN +F DQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDN
Sbjct: 72  MPFVEREQYQISSSCKLHPDNHLFSDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDN 131

Query: 61  RHNNLLNVSHGKCLADLCGALHCDFVMNSKSSRSKCNPAAVAKNRHLCESLANRCFPINQ 120
           RH  LLNVSH KCLADLCGALHCD VMNSK+ ++KCNPAA  +NRHLCESLA+ CFP+N 
Sbjct: 132 RHYGLLNVSHSKCLADLCGALHCDLVMNSKTPKAKCNPAAAVRNRHLCESLADSCFPVNH 191

Query: 121 GPSASRLHELFLRQFCDAHKCPRKSQPFPKGGRKQPSVFYLSISILTLMLLPIFYLIVYL 180
           G SASRLH++FLRQFCDAH C    +PF +GG KQPS+FYL+ISILTLM+LP+FY+IVYL
Sbjct: 192 GLSASRLHDIFLRQFCDAHTCSGGGKPFSRGGMKQPSIFYLAISILTLMMLPVFYVIVYL 251

Query: 181 YQREMRGGTQELKRIPRVGRKAKPS 205
           YQREMR GTQELKRI R G K KPS
Sbjct: 252 YQREMRNGTQELKRISRHGLKTKPS 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491160|ref|XP_002262859.2| PREDICTED: uncharacterized protein LOC100244377 [Vitis vinifera]

 Score =  350 bits (898), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 160/205 (78%), Positives = 179/205 (87%)

Query: 1   MPFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDN 60
           MPFVE+ QY+ISS C+LHPDN +F DQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDN
Sbjct: 50  MPFVEREQYQISSSCKLHPDNHLFSDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDN 109

Query: 61  RHNNLLNVSHGKCLADLCGALHCDFVMNSKSSRSKCNPAAVAKNRHLCESLANRCFPINQ 120
           RH  LLNVSH KCLADLCGALHCD VMNSK+ ++KCNPAA  +NRHLCESLA+ CFP+N 
Sbjct: 110 RHYGLLNVSHSKCLADLCGALHCDLVMNSKTPKAKCNPAAAVRNRHLCESLADSCFPVNH 169

Query: 121 GPSASRLHELFLRQFCDAHKCPRKSQPFPKGGRKQPSVFYLSISILTLMLLPIFYLIVYL 180
           G SASRLH++FLRQFCDAH C    +PF +GG KQPS+FYL+ISILTLM+LP+FY+IVYL
Sbjct: 170 GLSASRLHDIFLRQFCDAHTCSGGGKPFSRGGMKQPSIFYLAISILTLMMLPVFYVIVYL 229

Query: 181 YQREMRGGTQELKRIPRVGRKAKPS 205
           YQREMR GTQELKRI R G K KPS
Sbjct: 230 YQREMRNGTQELKRISRHGLKTKPS 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133834|ref|XP_002321672.1| predicted protein [Populus trichocarpa] gi|222868668|gb|EEF05799.1| predicted protein [Populus trichocarpa]

 Score =  348 bits (894), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 158/205 (77%), Positives = 184/205 (89%), Gaps = 2/205 (0%)

Query: 1   MPFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDN 60
           MPFVE+ QY+ISSKCRLHP ND+FRDQE+HKIHVDINEW+CGYCKK FRAEK+LDQHFDN
Sbjct: 64  MPFVEREQYQISSKCRLHPSNDLFRDQEEHKIHVDINEWKCGYCKKHFRAEKYLDQHFDN 123

Query: 61  RHNNLLNVSHGKCLADLCGALHCDFVMNSKSSRSKCNPAAVAKNRHLCESLANRCFPINQ 120
           RH NLLN+S GKC+ADLCGALHCDF+M+SKS+++KCNPAAVAKN HLCESLA+ CFP+NQ
Sbjct: 124 RHYNLLNISDGKCMADLCGALHCDFMMDSKSTKTKCNPAAVAKNHHLCESLADSCFPLNQ 183

Query: 121 GPSASRLHELFLRQFCDAHKCPRKSQPFPKGGRKQPSVFYLSISILTLMLLPIFYLIVYL 180
           GPSASRLHELFL QFCDAH C    + FPKGG+K+ SVFYL+ISILT+M++P+FYLIVYL
Sbjct: 184 GPSASRLHELFLHQFCDAHTCSGNKKLFPKGGKKKTSVFYLAISILTMMMIPLFYLIVYL 243

Query: 181 YQREMRGGTQELKRIPRVGRKAKPS 205
           +Q EMR GTQEL+RI +  RK KPS
Sbjct: 244 HQSEMRKGTQELRRISK--RKTKPS 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226531528|ref|NP_001142988.1| uncharacterized protein LOC100275449 precursor [Zea mays] gi|195612594|gb|ACG28127.1| zinc finger protein [Zea mays]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 145/205 (70%), Positives = 176/205 (85%)

Query: 1   MPFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDN 60
           MPFVE+ +YE+ SKCRL PDNDMFR+QEQHKIH DINEW CG+CKK+FRAEKF+DQHF+N
Sbjct: 72  MPFVEKEKYELPSKCRLRPDNDMFREQEQHKIHFDINEWHCGFCKKAFRAEKFIDQHFEN 131

Query: 61  RHNNLLNVSHGKCLADLCGALHCDFVMNSKSSRSKCNPAAVAKNRHLCESLANRCFPINQ 120
           RH NL++ S G+C+ADLCGALHCD +M  K  +SKCN AA  +NRHLCESLA+ CFPINQ
Sbjct: 132 RHKNLVDNSEGRCMADLCGALHCDLMMQFKKPKSKCNAAAATRNRHLCESLADSCFPINQ 191

Query: 121 GPSASRLHELFLRQFCDAHKCPRKSQPFPKGGRKQPSVFYLSISILTLMLLPIFYLIVYL 180
           G +ASRLHE FLRQFCDAH C + ++PFPKGGRKQ +  YL++SILTL+LLP+FYLIV+L
Sbjct: 192 GLAASRLHEFFLRQFCDAHTCSKGTKPFPKGGRKQTNRLYLALSILTLILLPLFYLIVFL 251

Query: 181 YQREMRGGTQELKRIPRVGRKAKPS 205
           +QREMR GTQ+LKR  ++G+K KPS
Sbjct: 252 HQREMRKGTQDLKRFSKIGQKKKPS 276

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440588|ref|XP_004138066.1| PREDICTED: uncharacterized protein LOC101218367 [Cucumis sativus]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 144/204 (70%), Positives = 175/204 (85%)

Query: 1   MPFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDN 60
           +PF+E+  YE+S++CRLHP+ND+FRDQEQHKIH+DIN W+CGYC+KSFRAEKFLD+HFDN
Sbjct: 76  LPFMEKENYEVSTQCRLHPNNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDN 135

Query: 61  RHNNLLNVSHGKCLADLCGALHCDFVMNSKSSRSKCNPAAVAKNRHLCESLANRCFPINQ 120
           RH+NLLNVSHGKCLADLCGALHCD  M+ KS +SKC PAA A+N+HLCESLA+ CFPIN+
Sbjct: 136 RHSNLLNVSHGKCLADLCGALHCDLKMDIKSRKSKCKPAAAARNKHLCESLADSCFPINE 195

Query: 121 GPSASRLHELFLRQFCDAHKCPRKSQPFPKGGRKQPSVFYLSISILTLMLLPIFYLIVYL 180
           GPSA+RLHELFL QFC AH C  K +PF +G  +QP +FY++ SIL LMLLPIFY+IVYL
Sbjct: 196 GPSANRLHELFLHQFCGAHSCTGKQKPFSRGAARQPGIFYMASSILILMLLPIFYVIVYL 255

Query: 181 YQREMRGGTQELKRIPRVGRKAKP 204
           ++RE R G + LKRI + GRK KP
Sbjct: 256 HRRESRNGIEVLKRISKAGRKNKP 279

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238013592|gb|ACR37831.1| unknown [Zea mays] gi|413916779|gb|AFW56711.1| zinc finger protein [Zea mays]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 145/205 (70%), Positives = 176/205 (85%)

Query: 1   MPFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDN 60
           MPFVE+ +YE+ SKCRL PDNDMFR+QEQHKIH DINEW CG+CKK+FRAEKF+DQHF+N
Sbjct: 71  MPFVEKEKYELPSKCRLRPDNDMFREQEQHKIHFDINEWHCGFCKKAFRAEKFIDQHFEN 130

Query: 61  RHNNLLNVSHGKCLADLCGALHCDFVMNSKSSRSKCNPAAVAKNRHLCESLANRCFPINQ 120
           RH NL++ S G+C+ADLCGALHCD +M  K  +SKCN AA  +NRHLCESLA+ CFPINQ
Sbjct: 131 RHKNLVDNSEGRCMADLCGALHCDLMMQFKKPKSKCNAAAATRNRHLCESLADSCFPINQ 190

Query: 121 GPSASRLHELFLRQFCDAHKCPRKSQPFPKGGRKQPSVFYLSISILTLMLLPIFYLIVYL 180
           G +ASRLHE FLRQFCDAH C + ++PFPKGGRKQ +  YL++SILTL+LLP+FYLIV+L
Sbjct: 191 GLAASRLHEFFLRQFCDAHTCSKGTKPFPKGGRKQTNRLYLALSILTLILLPLFYLIVFL 250

Query: 181 YQREMRGGTQELKRIPRVGRKAKPS 205
           +QREMR GTQ+LKR  ++G+K KPS
Sbjct: 251 HQREMRKGTQDLKRFSKIGQKKKPS 275

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242083250|ref|XP_002442050.1| hypothetical protein SORBIDRAFT_08g008280 [Sorghum bicolor] gi|241942743|gb|EES15888.1| hypothetical protein SORBIDRAFT_08g008280 [Sorghum bicolor]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 145/205 (70%), Positives = 176/205 (85%)

Query: 1   MPFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDN 60
           MPFVE+ +YE+ SKCRL PDNDMFR+QEQHKIH DINEW CG+CKK+FRAEKFLDQHF+N
Sbjct: 72  MPFVEKEKYELPSKCRLRPDNDMFREQEQHKIHFDINEWHCGFCKKAFRAEKFLDQHFEN 131

Query: 61  RHNNLLNVSHGKCLADLCGALHCDFVMNSKSSRSKCNPAAVAKNRHLCESLANRCFPINQ 120
           RH NL++ S G+C+ADLCGALHCD +M  K  +SKCN AA  +NRHLCESLA+ CFP+NQ
Sbjct: 132 RHKNLVDNSEGRCMADLCGALHCDLMMQFKKPKSKCNAAAATRNRHLCESLADSCFPVNQ 191

Query: 121 GPSASRLHELFLRQFCDAHKCPRKSQPFPKGGRKQPSVFYLSISILTLMLLPIFYLIVYL 180
           G +ASRLHE FLRQFCDAH C + ++PFPKGGRKQ + FYL++ ILTL+LLP+FYLIV+L
Sbjct: 192 GLAASRLHEFFLRQFCDAHTCNKGTKPFPKGGRKQTNRFYLALCILTLILLPLFYLIVFL 251

Query: 181 YQREMRGGTQELKRIPRVGRKAKPS 205
           +QREMR GTQ+LKR  ++G+K KPS
Sbjct: 252 HQREMRKGTQDLKRFSKIGQKKKPS 276

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218186624|gb|EEC69051.1| hypothetical protein OsI_37889 [Oryza sativa Indica Group]

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 146/205 (71%), Positives = 174/205 (84%)

Query: 1   MPFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDN 60
           MPFVE+ +YE+ SKCRLHPDNDMFR+QEQHKIH DINEWRCG+CKK+FRAEKFLDQHF N
Sbjct: 126 MPFVEKEKYELPSKCRLHPDNDMFREQEQHKIHFDINEWRCGFCKKAFRAEKFLDQHFHN 185

Query: 61  RHNNLLNVSHGKCLADLCGALHCDFVMNSKSSRSKCNPAAVAKNRHLCESLANRCFPINQ 120
           RHNNL++ S G+CLADLCGALHCD ++  K  +SKC+  A A+NRHLCESLA+ CFPINQ
Sbjct: 186 RHNNLVDNSQGRCLADLCGALHCDLMLEFKKPKSKCSATAAARNRHLCESLADSCFPINQ 245

Query: 121 GPSASRLHELFLRQFCDAHKCPRKSQPFPKGGRKQPSVFYLSISILTLMLLPIFYLIVYL 180
           G SASRLHE FLRQFCDAH C   S+PFPKGGRKQ + FYL++  LT++LLP+FYLIV+L
Sbjct: 246 GQSASRLHEFFLRQFCDAHTCKNGSKPFPKGGRKQTNRFYLALCALTIVLLPLFYLIVFL 305

Query: 181 YQREMRGGTQELKRIPRVGRKAKPS 205
           +QREM+ G Q L+RI +V +K KPS
Sbjct: 306 HQREMKKGGQNLRRISKVVQKKKPS 330

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081316|emb|CBI17698.3| unnamed protein product [Vitis vinifera]

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 145/205 (70%), Positives = 168/205 (81%)

Query: 1   MPFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDN 60
           MPFVE+  Y+ISS CRLH +ND++RDQEQHKIHVDINEWRCGYCKKSF AE +LD+HFDN
Sbjct: 205 MPFVEKEGYQISSSCRLHHENDLYRDQEQHKIHVDINEWRCGYCKKSFYAENYLDKHFDN 264

Query: 61  RHNNLLNVSHGKCLADLCGALHCDFVMNSKSSRSKCNPAAVAKNRHLCESLANRCFPINQ 120
           RH NLLNVS  KCLAD+CGALHCD VM+SK  ++KCNPAA A+N HLCESLA+ CFP++ 
Sbjct: 265 RHYNLLNVSQNKCLADVCGALHCDHVMDSKLQKTKCNPAAAARNHHLCESLADGCFPVSG 324

Query: 121 GPSASRLHELFLRQFCDAHKCPRKSQPFPKGGRKQPSVFYLSISILTLMLLPIFYLIVYL 180
           GPSASRLHE FLRQFCDAH C    +PF +G +K+ SVFYL ISILTLMLLP+FY  VYL
Sbjct: 325 GPSASRLHEFFLRQFCDAHTCTGGRKPFSRGRKKRTSVFYLCISILTLMLLPLFYFFVYL 384

Query: 181 YQREMRGGTQELKRIPRVGRKAKPS 205
           YQR +R G Q  +RI   GRK KP+
Sbjct: 385 YQRGLRRGAQNFRRISESGRKKKPT 409

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115487926|ref|NP_001066450.1| Os12g0233400 [Oryza sativa Japonica Group] gi|108862374|gb|ABA96879.2| zinc finger family protein, putative, expressed [Oryza sativa Japonica Group] gi|108862375|gb|ABG21933.1| zinc finger family protein, putative, expressed [Oryza sativa Japonica Group] gi|108862376|gb|ABG21934.1| zinc finger family protein, putative, expressed [Oryza sativa Japonica Group] gi|108862377|gb|ABG21935.1| zinc finger family protein, putative, expressed [Oryza sativa Japonica Group] gi|113648957|dbj|BAF29469.1| Os12g0233400 [Oryza sativa Japonica Group] gi|215697514|dbj|BAG91508.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 144/205 (70%), Positives = 172/205 (83%)

Query: 1   MPFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDN 60
           MPFVE+ +YE+ SKCRLHP NDMFR+QEQHKIH DINEWRCG+CKK+FRAEKFLDQHF N
Sbjct: 71  MPFVEKEKYELPSKCRLHPGNDMFREQEQHKIHFDINEWRCGFCKKAFRAEKFLDQHFHN 130

Query: 61  RHNNLLNVSHGKCLADLCGALHCDFVMNSKSSRSKCNPAAVAKNRHLCESLANRCFPINQ 120
           RHNNL++ S G+CLADLCGALHCD ++  K  +SKC+  A A+NRHLCESLA+ CFPINQ
Sbjct: 131 RHNNLVDNSQGRCLADLCGALHCDLMLEFKKPKSKCSATAAARNRHLCESLADSCFPINQ 190

Query: 121 GPSASRLHELFLRQFCDAHKCPRKSQPFPKGGRKQPSVFYLSISILTLMLLPIFYLIVYL 180
           G SASRLHE  LRQFCDAH C   S+PFPKGGRKQ + FYL++  LT++LLP+FYLIV+L
Sbjct: 191 GQSASRLHEFLLRQFCDAHTCKNGSKPFPKGGRKQTNRFYLALCALTIVLLPLFYLIVFL 250

Query: 181 YQREMRGGTQELKRIPRVGRKAKPS 205
           +QREM+ G Q L+RI +V +K KPS
Sbjct: 251 HQREMKKGGQNLRRISKVVQKKKPS 275

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2162012	271	AT5G63280 "AT5G63280" [Arabido	0.995	0.752	0.710	1.2e-83
TAIR|locus:2168783	272	AT5G40710 "AT5G40710" [Arabido	0.990	0.746	0.588	1e-68
FB|FBgn0031257	667	CG4133 [Drosophila melanogaste	0.458	0.140	0.347	2.6e-16
CGD|CAL0005892	132	orf19.4195 [Candida albicans (	0.326	0.507	0.373	3.1e-07
UNIPROTKB|Q59NH5	132	CaO19.4195 "Potential zinc fin	0.326	0.507	0.373	3.1e-07

TAIR|locus:2162012 AT5G63280 "AT5G63280" [Arabidopsis thaliana (taxid:3702)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 145/204 (71%), Positives = 173/204 (84%)

Query:     2 PFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDNR 61
             PFVE+ +YEI   CRLHPDND++RDQE HK+HVD+ EW+CGYCKKSF  EKFLD+HF  R
Sbjct:    68 PFVERERYEIPKNCRLHPDNDLYRDQEHHKVHVDVFEWKCGYCKKSFNDEKFLDKHFSTR 127

Query:    62 HNNLLNVSHGKCLADLCGALHCDFVMNSKSSRSKCNPAAVAKNRHLCESLANRCFPINQG 121
             H NLLN +  KCLADLCGALHCDFV++SK  +SKCNP AVAKNRHLCES+AN CFP++QG
Sbjct:   128 HYNLLNTTDTKCLADLCGALHCDFVLSSKKPKSKCNPPAVAKNRHLCESVANSCFPVSQG 187

Query:   122 PSASRLHELFLRQFCDAHKCPRKSQPFPKGGRKQPSVFYLSISILTLMLLPIFYLIVYLY 181
             PSASRLHE FLRQFCDAH C    +PFP+GG+K+  VFYL+ISILTLMLLP+FYL+V+L+
Sbjct:   188 PSASRLHEHFLRQFCDAHTCTGNDKPFPRGGKKKSGVFYLAISILTLMLLPLFYLLVFLH 247

Query:   182 QREMRGGTQELKRIPRVGRKAKPS 205
             QRE R GTQ+L+RI + G+K KPS
Sbjct:   248 QREKRSGTQDLRRIIKSGKKTKPS 271

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2168783 AT5G40710 "AT5G40710" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 120/204 (58%), Positives = 162/204 (79%)

Query:     1 MPFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDN 60
             MP+VE+ +Y++ S CR+H DND++R+QE+HK+  DINEWRCG+CKK+F  EK+LD+HFD+
Sbjct:    69 MPYVEKERYQLPSTCRVHRDNDIYREQEEHKLRSDINEWRCGFCKKAFYEEKYLDKHFDS 128

Query:    61 RHNNLLNVSHGKCLADLCGALHCDFVMNSKSSRSKCNPAAVAKNRHLCESLANRCFPINQ 120
             RH NLLN SHGKCL+DLCGALHCD V+++   +SKCNPAA AKNRHLCESLAN CFP+N+
Sbjct:   129 RHYNLLNASHGKCLSDLCGALHCDLVVDTARLKSKCNPAAAAKNRHLCESLANSCFPVNK 188

Query:   121 GPSASRLHELFLRQFCDAHKCPRKSQPFPKGGRKQPSVFYLSISILTLMLLPIFYLIVYL 180
             G SA+RLH+ FLRQFCDAH C   S+P  +  +K+ S+ Y+  SI+ L++L ++Y  VYL
Sbjct:   189 GSSANRLHDFFLRQFCDAHTCSGGSKPLSQKPKKR-SIVYIIFSIIVLVVLLLYYSFVYL 247

Query:   181 YQREMRGGTQELKRIPRVGRKAKP 204
             ++R ++  +Q+LKRI   G K KP
Sbjct:   248 FRRGLKRRSQDLKRIRHNGLKKKP 271

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISS

FB|FBgn0031257 CG4133 [Drosophila melanogaster (taxid:7227)]

 Score = 172 (65.6 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
 Identities = 33/95 (34%), Positives = 50/95 (52%)

Query:     2 PFVEQVQYEISSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDNR 61
             P +++ Q ++  +C LHP  D+F  ++  K      +W C  C KSF  EK LD HFD R
Sbjct:    49 PILDKHQVKLPLECPLHPFRDVFAPRQDAKQRDRPTQWTCRKCGKSFYQEKHLDLHFDTR 108

Query:    62 HNNLLNVSHGK-CLADLCGALHCDFVMNSKSSRSK 95
             H +++N +    CLAD C  + C+      +S  K
Sbjct:   109 HKSIINEAEDAVCLADFCDIMRCEVFETEDASSLK 143

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

CGD|CAL0005892 orf19.4195 [Candida albicans (taxid:5476)]

 Score = 118 (46.6 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 28/75 (37%), Positives = 37/75 (49%)

Query:    15 CRLHPD-NDMFRDQEQHKIHV-DINEWRCGYCKKSFRAEKFLDQHFDNRHNNLLNVSH-- 70
             C  HP  N  F D +Q+ +HV  I+E  C  C K F  +KFL  H D  HN +L +    
Sbjct:    28 CNYHPCFNQAFEDYQQYHLHVVSIHEHTCESCLKVFPDKKFLSLHIDENHNPILQIKQER 87

Query:    71 G----KCLADLCGAL 81
             G    KC  + C A+
Sbjct:    88 GDKIFKCYTESCKAV 102

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q59NH5 CaO19.4195 "Potential zinc finger protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 118 (46.6 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 28/75 (37%), Positives = 37/75 (49%)

Query:    15 CRLHPD-NDMFRDQEQHKIHV-DINEWRCGYCKKSFRAEKFLDQHFDNRHNNLLNVSH-- 70
             C  HP  N  F D +Q+ +HV  I+E  C  C K F  +KFL  H D  HN +L +    
Sbjct:    28 CNYHPCFNQAFEDYQQYHLHVVSIHEHTCESCLKVFPDKKFLSLHIDENHNPILQIKQER 87

Query:    71 G----KCLADLCGAL 81
             G    KC  + C A+
Sbjct:    88 GDKIFKCYTESCKAV 102


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.138   0.444    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      205       205   0.00096  111 3  11 22  0.42    32
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  191 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.05u 0.16s 21.21t   Elapsed:  00:00:01
  Total cpu time:  21.05u 0.16s 21.21t   Elapsed:  00:00:01
  Start:  Sat May 11 06:32:45 2013   End:  Sat May 11 06:32:46 2013

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	98.4
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.0
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.99
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	95.75
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.19
smart00355	26	ZnF_C2H2 zinc finger.	95.15
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	94.94
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	93.96
PHA00733	128	hypothetical protein	93.56
PHA00616	44	hypothetical protein	93.16
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	90.84
PHA02768	55	hypothetical protein; Provisional	90.75
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	89.05
PF15018	38	InaF-motif: TRP-interacting helix	85.88
PHA00732	79	hypothetical protein	85.0
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	84.21
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	83.97
PHA00732	79	hypothetical protein	81.47
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	81.39

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=3e-08  Score=86.73  Aligned_cols=67  Identities=24%  Similarity=0.601  Sum_probs=59.4

Q ss_pred             CCCCCCCCccCCchHhhhhhh-cCcccccccccccCCchhhHhhhhhhcccccccCC--cc----Cchhhhccc
Q 028666           14 KCRLHPDNDMFRDQEQHKIHV-DINEWRCGYCKKSFRAEKFLDQHFDNRHNNLLNVS--HG----KCLADLCGA   80 (205)
Q Consensus        14 ~C~L~P~~D~F~~~E~~k~h~-~~h~~rC~~C~K~F~sE~~LDlHidnrH~~ll~~~--~~----~CLad~C~~   80 (205)
                      .|+.--.-.+|..-+.||.|| ..|.+-|.+|+|.|||.+.||.||-|-|+++.++.  |+    .||+|+|..
T Consensus        81 ~cqvagc~~~~d~lD~~E~hY~~~h~~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~  154 (253)
T KOG4173|consen   81 ACQVAGCCQVFDALDDYEHHYHTLHGNSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTE  154 (253)
T ss_pred             cccccchHHHHhhhhhHHHhhhhcccchhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhh
Confidence            577666667899999999999 88999999999999999999999999999988754  43    899999974

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.00  E-value=0.00028  Score=39.20  Aligned_cols=24  Identities=42%  Similarity=0.848  Sum_probs=20.7

Q ss_pred             cccccccccCCchhhHhhhhhhcc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |+|.+|++.|++..-|..|+...|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999999877

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.99  E-value=0.00025  Score=40.18  Aligned_cols=23  Identities=35%  Similarity=0.833  Sum_probs=21.4

Q ss_pred             cccccccccCCchhhHhhhhhhcc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      ++|..|+|.|++...|..||.. |
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~-H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR-H   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH-H
T ss_pred             CCCCCCCCccCCHHHHHHHHhH-C
Confidence            5899999999999999999987 5

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=95.75  E-value=0.0027  Score=55.54  Aligned_cols=34  Identities=32%  Similarity=0.787  Sum_probs=28.0

Q ss_pred             cCcccccccccccCCchhhHhhhhhhcccccccC
Q 028666           35 DINEWRCGYCKKSFRAEKFLDQHFDNRHNNLLNV   68 (205)
Q Consensus        35 ~~h~~rC~~C~K~F~sE~~LDlHidnrH~~ll~~   68 (205)
                      ..+.|+|..|+|-|..++|+-+||.++|.++|..
T Consensus        74 ~~~K~~C~lc~KlFkg~eFV~KHI~nKH~e~ve~  107 (214)
T PF04959_consen   74 DEDKWRCPLCGKLFKGPEFVRKHIFNKHPEKVEE  107 (214)
T ss_dssp             SSEEEEE-SSS-EESSHHHHHHHHHHH-HHHHHH
T ss_pred             cCCEECCCCCCcccCChHHHHHHHhhcCHHHHHH
Confidence            4478999999999999999999999999998763

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.19  E-value=0.0088  Score=35.44  Aligned_cols=23  Identities=35%  Similarity=0.755  Sum_probs=20.5

Q ss_pred             ccccccccccCCchhhHhhhhhh
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      ++.|..|+|.|.+|..|+.|+..
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCCcccCCCCcCCHHHHHHHHcc
Confidence            47899999999999999999864

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=95.15  E-value=0.012  Score=32.56  Aligned_cols=24  Identities=33%  Similarity=0.797  Sum_probs=21.2

Q ss_pred             cccccccccCCchhhHhhhhhhccc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      ++|..|++.|.+...|..|+. .|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~-~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR-THX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH-Hhc
Confidence            479999999999999999998 554

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=94.94  E-value=0.012  Score=34.35  Aligned_cols=24  Identities=25%  Similarity=0.541  Sum_probs=21.5

Q ss_pred             cccccccccCCchhhHhhhhhhcc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      .+|..|++.|.++..|-.|+...|
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCccCCccCChhHHHHHhHHhc
Confidence            589999999999999999996654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=93.96  E-value=0.025  Score=32.36  Aligned_cols=22  Identities=41%  Similarity=0.831  Sum_probs=20.3

Q ss_pred             cccccccccCCchhhHhhhhhh
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      |.|..|++.|.++..|..|+.-
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            7899999999999999999863

>PHA00733 hypothetical protein

Probab=93.56  E-value=0.092  Score=42.17  Aligned_cols=43  Identities=26%  Similarity=0.330  Sum_probs=34.2

Q ss_pred             ccCCchHhhhhhhc--CcccccccccccCCchhhHhhhhhhcccc
Q 028666           22 DMFRDQEQHKIHVD--INEWRCGYCKKSFRAEKFLDQHFDNRHNN   64 (205)
Q Consensus        22 D~F~~~E~~k~h~~--~h~~rC~~C~K~F~sE~~LDlHidnrH~~   64 (205)
                      -.|......+.|..  .+.+.|..|+|.|.....|..|+.+.|+-
T Consensus        81 k~Fss~s~L~~H~r~h~~~~~C~~CgK~F~~~~sL~~H~~~~h~~  125 (128)
T PHA00733         81 MPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNTDSTLDHVCKKHNI  125 (128)
T ss_pred             CcCCCHHHHHHHHhcCCcCccCCCCCCccCCHHHHHHHHHHhcCc
Confidence            36888888887775  45678888888888888888888888874

>PHA00616 hypothetical protein

Probab=93.16  E-value=0.033  Score=37.83  Aligned_cols=26  Identities=27%  Similarity=0.517  Sum_probs=23.5

Q ss_pred             cccccccccCCchhhHhhhhhhcccc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNRHNN   64 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnrH~~   64 (205)
                      .+|+.|||.|.....|..|+-..|..
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~   27 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQ   27 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCC
Confidence            58999999999999999999777764

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=90.84  E-value=0.12  Score=37.11  Aligned_cols=28  Identities=36%  Similarity=0.930  Sum_probs=23.2

Q ss_pred             ccccccccccCCchhhHhhhhhhc-cccc
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFDNR-HNNL   65 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHidnr-H~~l   65 (205)
                      .|+|..|++.|.+..-|..||... |...
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~   78 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKKR   78 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC-
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCCc
Confidence            499999999999999999999975 5544

>PHA02768 hypothetical protein; Provisional

Probab=90.75  E-value=0.14  Score=36.29  Aligned_cols=24  Identities=17%  Similarity=0.499  Sum_probs=21.7

Q ss_pred             cccccccccCCchhhHhhhhhhcc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      ++|.+|||.|.....|-.|+...+
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~   29 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN   29 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC
Confidence            589999999999999999999855

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=89.05  E-value=0.22  Score=39.52  Aligned_cols=28  Identities=25%  Similarity=0.462  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHhhhheecccccccc
Q 028666          163 ISILTLMLLPIFYLIVYLYQREMRGGTQ  190 (205)
Q Consensus       163 ~~~~~l~~l~~fY~~v~~~~r~~~~~~~  190 (205)
                      ++||++++|++|.++.+.-+|.+|+|.+
T Consensus         5 ~~iii~~i~l~~~~~~~~~rRR~r~G~~   32 (130)
T PF12273_consen    5 FAIIIVAILLFLFLFYCHNRRRRRRGLQ   32 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            3333333333444444444555454433

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PF15018 InaF-motif: TRP-interacting helix

Probab=85.88  E-value=0.78  Score=30.36  Aligned_cols=24  Identities=29%  Similarity=0.578  Sum_probs=19.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhh
Q 028666          156 PSVFYLSISILTLMLLPIFYLIVY  179 (205)
Q Consensus       156 ~~~~y~~~~~~~l~~l~~fY~~v~  179 (205)
                      +-+.|++..-+..++|.+||+++|
T Consensus         9 tV~~Yl~~VSl~Ai~LsiYY~f~W   32 (38)
T PF15018_consen    9 TVVAYLFSVSLAAIVLSIYYIFFW   32 (38)
T ss_pred             HHHHHHHHHHHHHHHHHHHHheee
Confidence            335588777778889999999988

>PHA00732 hypothetical protein

Probab=85.00  E-value=0.56  Score=34.98  Aligned_cols=33  Identities=33%  Similarity=0.449  Sum_probs=17.1

Q ss_pred             cCCchHhhhhhhc--CcccccccccccCCchhhHhhhh
Q 028666           23 MFRDQEQHKIHVD--INEWRCGYCKKSFRAEKFLDQHF   58 (205)
Q Consensus        23 ~F~~~E~~k~h~~--~h~~rC~~C~K~F~sE~~LDlHi   58 (205)
                      .|......+.|..  ....+|..|||.|.   .|..|+
T Consensus        10 ~F~s~s~Lk~H~r~~H~~~~C~~CgKsF~---~l~~H~   44 (79)
T PHA00732         10 TTVTLFALKQHARRNHTLTKCPVCNKSYR---RLNQHF   44 (79)
T ss_pred             ccCCHHHHHHHhhcccCCCccCCCCCEeC---Chhhhh
Confidence            4555555555552  22345555555555   255555

>smart00451 ZnF_U1 U1-like zinc finger

Probab=84.21  E-value=0.62  Score=28.27  Aligned_cols=24  Identities=21%  Similarity=0.620  Sum_probs=21.2

Q ss_pred             ccccccccccCCchhhHhhhhhhc
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      .+.|..|++.|.++..+..|+..+
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChH
Confidence            478999999999999999998654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=83.97  E-value=0.75  Score=31.29  Aligned_cols=26  Identities=31%  Similarity=0.629  Sum_probs=22.5

Q ss_pred             ccccccccccCCchhhHhhhhhhcccc
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFDNRHNN   64 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHidnrH~~   64 (205)
                      .++|.+||| -.++.-|-.|+++.|..
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~   27 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRS   27 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcC
Confidence            578999999 56678899999999986

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00732 hypothetical protein

Probab=81.47  E-value=1.7  Score=32.42  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=23.1

Q ss_pred             cccccccccCCchhhHhhhhhhcccc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNRHNN   64 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnrH~~   64 (205)
                      .+|..|||.|.+...|..|+...|.+
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~~   27 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHTL   27 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccCC
Confidence            47999999999999999999876764

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=81.39  E-value=1  Score=42.72  Aligned_cols=35  Identities=29%  Similarity=0.673  Sum_probs=28.4

Q ss_pred             cCcccccccccccCCchhhHhhhhhhcccccccCC
Q 028666           35 DINEWRCGYCKKSFRAEKFLDQHFDNRHNNLLNVS   69 (205)
Q Consensus        35 ~~h~~rC~~C~K~F~sE~~LDlHidnrH~~ll~~~   69 (205)
                      .-+.++|+||.|.|++...|--||.++-.--|+++
T Consensus       192 kL~r~~CLyCekifrdkntLkeHMrkK~HrrinPk  226 (423)
T KOG2482|consen  192 KLERLRCLYCEKIFRDKNTLKEHMRKKRHRRINPK  226 (423)
T ss_pred             HHhhheeeeeccccCCcHHHHHHHHhccCcccCCC
Confidence            55899999999999999999999987544444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	97.1
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	97.07
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	96.96
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	96.9
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	96.79
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	96.63
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	96.59
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	96.49
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	96.48
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	96.44
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	96.44
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	96.4
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	96.39
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	96.35
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	96.34
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	96.33
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	96.32
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	96.31
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	96.28
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	96.15
1paa_A	30	Yeast transcription factor ADR1; transcription reg	96.09
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	96.07
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	96.02
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	96.01
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	95.99
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	95.99
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	95.94
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	95.91
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	95.88
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	95.88
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	95.86
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	95.84
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	95.83
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	95.74
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	95.72
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.67
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	95.67
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	95.66
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	95.64
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	95.62
1ard_A	29	Yeast transcription factor ADR1; transcription reg	95.61
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	95.54
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	95.53
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	95.5
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.5
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	95.47
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	95.45
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	95.4
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	95.38
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	95.36
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	95.35
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	95.34
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	95.31
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	95.27
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	95.25
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.24
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	95.22
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	95.18
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	94.17
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	95.15
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	95.14
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	95.14
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	95.12
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	95.12
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	95.1
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	95.1
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.09
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	95.05
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	95.01
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	95.01
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	94.98
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.97
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	94.97
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	94.96
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	94.96
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	94.96
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.94
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.94
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.93
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	94.92
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.91
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	94.91
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.91
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	94.88
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	94.87
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	93.87
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	94.85
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.84
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	94.83
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	94.83
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.81
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	93.77
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	94.75
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.74
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	94.74
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	94.73
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.72
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	94.71
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.71
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.7
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	94.7
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.67
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.66
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.66
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	94.66
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	94.65
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.64
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.64
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.63
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	94.62
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.59
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.59
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.59
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.58
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.58
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.56
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.56
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.56
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	94.55
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	94.55
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.53
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	94.52
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	94.52
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.52
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	94.51
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.51
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	94.51
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	94.5
2epa_A	72	Krueppel-like factor 10; transforming growth facto	94.5
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.5
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	94.5
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.5
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.47
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.46
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	94.42
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.37
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	94.37
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.36
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	94.35
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.34
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	94.34
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	94.33
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.33
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.33
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.32
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	94.32
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	94.24
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.24
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	94.23
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	94.22
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	94.21
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.21
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.2
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.18
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.18
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.18
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.13
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.12
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	94.1
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.09
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	94.09
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	94.07
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	94.06
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	94.05
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	94.03
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.02
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	93.98
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	93.97
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	93.95
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	93.94
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	93.92
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	93.9
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	93.83
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	93.81
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.71
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	93.71
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	93.69
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	93.68
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.64
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	93.63
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	93.62
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	93.61
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	93.58
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	93.58
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	93.5
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	93.46
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	93.4
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	93.34
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	93.29
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	93.26
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	93.24
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	93.09
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	93.04
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	93.02
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	92.99
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	92.98
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	92.84
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	92.59
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	92.19
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	92.17
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	91.86
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	91.72
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	91.61
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	91.2
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	91.19
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	91.08
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	91.02
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	90.86
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	90.39
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	90.05
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	89.88
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	89.79
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.87
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	88.62
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	88.2
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.19
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	88.02
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	87.66
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	85.48
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	85.15
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	85.1
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	84.81
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	84.28
3ax1_A	358	Serrate RNA effector molecule; miRNA processing, p	84.1
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	83.36
2epa_A	72	Krueppel-like factor 10; transforming growth facto	81.83
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	81.11
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	80.72
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	80.36
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	80.11
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	80.08

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=97.10  E-value=0.00046  Score=44.19  Aligned_cols=51  Identities=25%  Similarity=0.516  Sum_probs=41.2

Q ss_pred             CCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhccccc
Q 028666           13 SKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRHNNL   65 (205)
Q Consensus        13 ~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH~~l   65 (205)
                      ..|+.-  ...|.....++.|...|    .++|..|+|.|.+...|..|+...|..-
T Consensus         3 ~~C~~C--~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            3 FVCEVC--TRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             BCCTTT--CCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCCCC--ccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            346543  35799999999998555    3789999999999999999998888653

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=97.07  E-value=0.00038  Score=43.99  Aligned_cols=48  Identities=21%  Similarity=0.488  Sum_probs=38.4

Q ss_pred             CCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhccc
Q 028666           14 KCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        14 ~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      .|+.-  ...|.....++.|...|    .++|.+|+|.|.+...|..|+...|.
T Consensus         3 ~C~~C--~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            3 ICEEC--GIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             BCTTT--CCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             cCCCC--cCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcc
Confidence            45443  35799999999998544    37899999999999999999977664

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=96.96  E-value=0.00032  Score=44.32  Aligned_cols=49  Identities=20%  Similarity=0.562  Sum_probs=39.1

Q ss_pred             CCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhccc
Q 028666           13 SKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        13 ~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      -.|+.-  ...|.....++.|...|    .++|..|+|.|.+...|..|+...|.
T Consensus         5 ~~C~~C--~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            5 RECSYC--GKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             CBCTTT--CCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             ccCCCC--cchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            456653  35799999998888544    48999999999999999999988773

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.90  E-value=0.00052  Score=45.50  Aligned_cols=56  Identities=20%  Similarity=0.408  Sum_probs=44.6

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhcCcc----cccccccccCCchhhHhhhhhhcccccccC
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVDINE----WRCGYCKKSFRAEKFLDQHFDNRHNNLLNV   68 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~~h~----~rC~~C~K~F~sE~~LDlHidnrH~~ll~~   68 (205)
                      -+..|+.-  ...|.....++.|...|.    ++|.+|+|.|.+...|..|+...|.....+
T Consensus         8 ~~~~C~~C--~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            8 HPEKCSEC--SYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             CSEECSSS--SCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCeECCCC--CcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            34566653  357999999999986654    899999999999999999999888765443

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.79  E-value=0.00053  Score=46.25  Aligned_cols=54  Identities=20%  Similarity=0.414  Sum_probs=43.8

Q ss_pred             CCCCCCCCCCccCCchHhhhhhhcCc-------ccccccccccCCchhhHhhhhhhccccccc
Q 028666           12 SSKCRLHPDNDMFRDQEQHKIHVDIN-------EWRCGYCKKSFRAEKFLDQHFDNRHNNLLN   67 (205)
Q Consensus        12 ~~~C~L~P~~D~F~~~E~~k~h~~~h-------~~rC~~C~K~F~sE~~LDlHidnrH~~ll~   67 (205)
                      +..|..-  .-.|.....++.|...|       .+.|.+|+|.|.+...|..|+...|.....
T Consensus         7 ~~~C~~C--~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A            7 GLQCEIC--GFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CEECSSS--CCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             CeECCCC--CCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            4456653  35799999999998554       489999999999999999999999986544

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=96.63  E-value=0.00089  Score=46.51  Aligned_cols=52  Identities=15%  Similarity=0.391  Sum_probs=38.6

Q ss_pred             CCCCCCCCCCccCCchHhhhhhhcCc----ccccc--cccccCCchhhHhhhhhhccc
Q 028666           12 SSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCG--YCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        12 ~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~--~C~K~F~sE~~LDlHidnrH~   63 (205)
                      +..|.++-....|.....++.|...|    .+.|.  .|+|.|.+...|..|+...+.
T Consensus        15 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   72 (100)
T 2ebt_A           15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG   72 (100)
T ss_dssp             CEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTS
T ss_pred             ceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCC
Confidence            34677766667888888888887443    37886  589999988888888865443

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.59  E-value=0.0021  Score=43.20  Aligned_cols=51  Identities=20%  Similarity=0.345  Sum_probs=41.1

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhcCcc----cccccccccCCchhhHhhhhhhccc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVDINE----WRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~~h~----~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      -+..|+.-  ...|.....++.|...|.    ++|.+|+|.|.+...|..|+...+.
T Consensus        17 ~~~~C~~C--~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~   71 (77)
T 2cot_A           17 RRYKCDEC--GKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG   71 (77)
T ss_dssp             CSSBCSSS--CCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCC
T ss_pred             CCEECCCC--CcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCC
Confidence            45677753  368999999999986654    7899999999999999999975443

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.49  E-value=0.0017  Score=43.44  Aligned_cols=52  Identities=21%  Similarity=0.402  Sum_probs=41.0

Q ss_pred             cCCCCCCCCCCCccCCchHhhhhhhcCcc----cccccccccCCchhhHhhhhhhccc
Q 028666           10 EISSKCRLHPDNDMFRDQEQHKIHVDINE----WRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        10 ~l~~~C~L~P~~D~F~~~E~~k~h~~~h~----~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      .-+..|+.-  ...|.....++.|...|.    ++|..|+|.|.+...|..|+...+.
T Consensus        15 ~~~~~C~~C--~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~   70 (74)
T 2lce_A           15 DKPYKCDRC--QASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG   70 (74)
T ss_dssp             CCSBCCTTS--SCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCC
T ss_pred             CCCeECCCC--CceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCC
Confidence            345677753  468999999999885543    7999999999999999999976543

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=96.48  E-value=0.00073  Score=46.09  Aligned_cols=52  Identities=17%  Similarity=0.461  Sum_probs=40.8

Q ss_pred             CCCCCCCCCCccCCchHhhhhhhcC----cccccccccccCCchhhHhhhhhhccc
Q 028666           12 SSKCRLHPDNDMFRDQEQHKIHVDI----NEWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        12 ~~~C~L~P~~D~F~~~E~~k~h~~~----h~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      +..|++......|.....++.|...    ..+.|..|+|.|.+...|..|+...+.
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   59 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG   59 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCC
Confidence            4567765556789999988888844    347999999999999999999976543

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.44  E-value=0.0012  Score=47.76  Aligned_cols=43  Identities=21%  Similarity=0.520  Sum_probs=38.1

Q ss_pred             ccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhcccc
Q 028666           22 DMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRHNN   64 (205)
Q Consensus        22 D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH~~   64 (205)
                      ..|.....++.|...|    .+.|.+|+|.|.+...|..||...|..
T Consensus        36 k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~   82 (85)
T 2lv2_A           36 ESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPS   82 (85)
T ss_dssp             CEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTT
T ss_pred             CCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcC
Confidence            5899999999999665    478999999999999999999988853

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=96.44  E-value=0.00073  Score=45.31  Aligned_cols=50  Identities=22%  Similarity=0.421  Sum_probs=38.6

Q ss_pred             CCCCCCCCccCCchHhhhhhhcCc----cccccc--ccccCCchhhHhhhhhhccc
Q 028666           14 KCRLHPDNDMFRDQEQHKIHVDIN----EWRCGY--CKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        14 ~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~--C~K~F~sE~~LDlHidnrH~   63 (205)
                      .|+++.....|.....++.|...|    .+.|..  |+|.|.+...|..|+...+.
T Consensus         3 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A            3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             cCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            465555567888888888887443    378988  99999999999999976554

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=96.40  E-value=0.00088  Score=44.44  Aligned_cols=49  Identities=18%  Similarity=0.513  Sum_probs=38.7

Q ss_pred             CCCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhh
Q 028666           12 SSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        12 ~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      +-.|++......|.....++.|...|    .++|..|||.|.+...|..|+..
T Consensus        19 ~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             ccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHh
Confidence            45677655566899988888887443    48899999999999999999854

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=96.39  E-value=0.001  Score=43.30  Aligned_cols=50  Identities=16%  Similarity=0.430  Sum_probs=39.6

Q ss_pred             CCCCCCCCCCccCCchHhhhhhhcC-c-----ccccccccccCCchhhHhhhhhhccc
Q 028666           12 SSKCRLHPDNDMFRDQEQHKIHVDI-N-----EWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        12 ~~~C~L~P~~D~F~~~E~~k~h~~~-h-----~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      |-.|+.-  ...|.....++.|... |     .++|..|+|.|.+...|..|+...|.
T Consensus        10 ~~~C~~C--~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           10 TYRCKVC--SRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEECTTT--CCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ceECCCC--cchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            4456643  3579999988888744 4     37899999999999999999988775

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=96.35  E-value=0.0012  Score=44.17  Aligned_cols=52  Identities=15%  Similarity=0.275  Sum_probs=43.4

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhcCcc-ccccc---ccccCCchhhHhhhhhhcc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVDINE-WRCGY---CKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~~h~-~rC~~---C~K~F~sE~~LDlHidnrH   62 (205)
                      -+..|+.+.....|.....++.|...|. ++|..   |+|.|.+...|..|+...|
T Consensus        30 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           30 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHHHSEECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CCeeCCCCCCcCccCCHHHHHHHHHHhCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            4567877555678999999999995544 89999   9999999999999998766

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.34  E-value=0.0017  Score=44.72  Aligned_cols=42  Identities=19%  Similarity=0.400  Sum_probs=25.6

Q ss_pred             ccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhccc
Q 028666           22 DMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        22 D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      ..|.....++.|...|    .+.|..|+|.|.+...|..|+...|.
T Consensus        15 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   60 (95)
T 2yt9_A           15 KIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG   60 (95)
T ss_dssp             CEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCC
T ss_pred             CccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcC
Confidence            4566666666666333    25666777777776666666655443

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=96.33  E-value=0.0043  Score=43.64  Aligned_cols=51  Identities=22%  Similarity=0.417  Sum_probs=37.1

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhccc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      -+..|+.-  ...|.....++.|...|    .++|..|+|.|.+...|..|+...+.
T Consensus        16 ~~~~C~~C--~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   70 (106)
T 2ee8_A           16 KEFICKFC--GRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK   70 (106)
T ss_dssp             CCCBCSSS--CCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCC
T ss_pred             cCeECCCC--CCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCC
Confidence            34566653  35788888888887443    47899999999999889888866543

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.32  E-value=0.0014  Score=43.66  Aligned_cols=51  Identities=18%  Similarity=0.257  Sum_probs=39.7

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhccc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      -+..|+.-  ...|.....++.|...|    .++|..|+|.|.+...|..|+...+.
T Consensus        13 k~~~C~~C--~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A           13 KPYGCVEC--GKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             CCEECSSS--CCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHS
T ss_pred             CCccCCCC--CCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            45567653  35799999998888554    37899999999999999999876543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=96.31  E-value=0.0025  Score=45.97  Aligned_cols=63  Identities=24%  Similarity=0.416  Sum_probs=46.6

Q ss_pred             CCCCCCCCCccCCchHhhhhhhcCc---ccccccccccCCchhhHhhhhhhcccccccCCccCchhhhcc
Q 028666           13 SKCRLHPDNDMFRDQEQHKIHVDIN---EWRCGYCKKSFRAEKFLDQHFDNRHNNLLNVSHGKCLADLCG   79 (205)
Q Consensus        13 ~~C~L~P~~D~F~~~E~~k~h~~~h---~~rC~~C~K~F~sE~~LDlHidnrH~~ll~~~~~~CLad~C~   79 (205)
                      ..|+..-....|.....++.|...|   .+.|..|+|.|.+...|..|+...+..    ..-.|-.+.|+
T Consensus         6 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~~~~C~   71 (124)
T 1ubd_C            6 IACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGE----KPFQCTFEGCG   71 (124)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHGGGSCCCEECTTTCCEESSHHHHHHHGGGTSCC----CCEECCSTTCC
T ss_pred             ccCCCCCCcCccCCHHHHHHHHHHcCCCCeECCCCCchhCCHHHHHHHHHHcCCC----CCeeCCCCCCc
Confidence            4677655567899999999998544   578999999999999999999865432    22355555555

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=96.28  E-value=0.0014  Score=44.47  Aligned_cols=51  Identities=16%  Similarity=0.407  Sum_probs=37.9

Q ss_pred             CCCCCCCCCCccCCchHhhhhhhcCcc----cccc--cccccCCchhhHhhhhhhcc
Q 028666           12 SSKCRLHPDNDMFRDQEQHKIHVDINE----WRCG--YCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        12 ~~~C~L~P~~D~F~~~E~~k~h~~~h~----~rC~--~C~K~F~sE~~LDlHidnrH   62 (205)
                      +..|+++-....|.....++.|...|.    +.|.  .|+|.|.+...|..|+...+
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~   61 (89)
T 2wbs_A            5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT   61 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHH
T ss_pred             CeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcC
Confidence            446777666678888888888885543    6886  48888888888888886443

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.15  E-value=0.0018  Score=46.32  Aligned_cols=51  Identities=18%  Similarity=0.322  Sum_probs=35.7

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhc-------CcccccccccccCCchhhHhhhhhhccc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVD-------INEWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~-------~h~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      -+..|+.-  ...|.....++.|..       ...+.|..|+|.|.+...|..|+...+.
T Consensus        34 ~~~~C~~C--~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   91 (124)
T 2dlq_A           34 KPFECPKC--GKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG   91 (124)
T ss_dssp             CSCBCTTT--CCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             CCeECCCC--CchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCC
Confidence            34567653  357888888887763       2347888888888888888888865543

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=96.09  E-value=0.0026  Score=34.61  Aligned_cols=25  Identities=28%  Similarity=0.778  Sum_probs=22.0

Q ss_pred             cccccccccCCchhhHhhhhhhccc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      +.|..|||.|.+...|..|+...|.
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~~H~   27 (30)
T 1paa_A            3 YACGLCNRAFTRRDLLIRHAQKIHS   27 (30)
T ss_dssp             SBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred             cCCcccCcccCChHHHHHHHHHHcc
Confidence            6899999999999999999766664

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.07  E-value=0.0041  Score=44.25  Aligned_cols=53  Identities=23%  Similarity=0.370  Sum_probs=42.4

Q ss_pred             CCCCCCCCCCCccCC-chHhhhhhhcCc-----ccccccccccCCchhhHhhhhhhccccc
Q 028666           11 ISSKCRLHPDNDMFR-DQEQHKIHVDIN-----EWRCGYCKKSFRAEKFLDQHFDNRHNNL   65 (205)
Q Consensus        11 l~~~C~L~P~~D~F~-~~E~~k~h~~~h-----~~rC~~C~K~F~sE~~LDlHidnrH~~l   65 (205)
                      -+..|+.-  ...|. ....++.|...|     .+.|.+|+|.|.+...|..|+...|...
T Consensus        23 ~~~~C~~C--~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k   81 (98)
T 2gqj_A           23 GEAVCPTC--NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK   81 (98)
T ss_dssp             SCCCCTTT--CCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSC
T ss_pred             CCcCCCCC--CCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCC
Confidence            34567753  35799 888899888554     3699999999999999999999888754

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.02  E-value=0.0035  Score=42.09  Aligned_cols=53  Identities=17%  Similarity=0.382  Sum_probs=42.0

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhc-Cc-----ccccccccccCCchhhHhhhhhhccccc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVD-IN-----EWRCGYCKKSFRAEKFLDQHFDNRHNNL   65 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~-~h-----~~rC~~C~K~F~sE~~LDlHidnrH~~l   65 (205)
                      -|-.|+.-  .-.|.....++.|.. .|     .++|..|+|.|.+...|..|+...|..-
T Consensus        14 k~~~C~~C--~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   72 (77)
T 2ct1_A           14 KPYECYIC--HARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS   72 (77)
T ss_dssp             CSEECTTT--CCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCS
T ss_pred             CCeECCCc--CchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            34567653  357999999998873 33     4789999999999999999999988754

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=96.01  E-value=0.0028  Score=34.12  Aligned_cols=25  Identities=24%  Similarity=0.650  Sum_probs=22.3

Q ss_pred             cccccccccCCchhhHhhhhhhccc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      +.|.+|||.|.+...|..|+...|.
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~h~~   27 (30)
T 1klr_A            3 YQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             ccCCCCCCccCCHHHHHHHHHHHcc
Confidence            6899999999999999999987654

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=95.99  E-value=0.0019  Score=46.09  Aligned_cols=49  Identities=16%  Similarity=0.375  Sum_probs=27.2

Q ss_pred             CCCCCCCCCccCCchHhhhhhhcCc----ccccc--cccccCCchhhHhhhhhhc
Q 028666           13 SKCRLHPDNDMFRDQEQHKIHVDIN----EWRCG--YCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        13 ~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~--~C~K~F~sE~~LDlHidnr   61 (205)
                      ..|+++-....|.....+..|...|    .++|.  .|+|.|.+...|..|+...
T Consensus         7 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h   61 (119)
T 2jp9_A            7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH   61 (119)
T ss_dssp             BCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             eeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHc
Confidence            4455544445566666666555332    35666  4666666666666666543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.99  E-value=0.003  Score=42.16  Aligned_cols=51  Identities=22%  Similarity=0.440  Sum_probs=42.3

Q ss_pred             CCCCCCCCCCccCCchHhhhhhhc-Cc----cccccc--ccccCCchhhHhhhhhhcc
Q 028666           12 SSKCRLHPDNDMFRDQEQHKIHVD-IN----EWRCGY--CKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        12 ~~~C~L~P~~D~F~~~E~~k~h~~-~h----~~rC~~--C~K~F~sE~~LDlHidnrH   62 (205)
                      +..|..+-....|.....++.|.. .|    .+.|..  |+|.|.+...|..|+...+
T Consensus         7 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~   64 (79)
T 2dlk_A            7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHS   64 (79)
T ss_dssp             SEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhC
Confidence            457887766778999999998875 44    478999  9999999999999997544

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=95.94  E-value=0.0021  Score=42.89  Aligned_cols=42  Identities=21%  Similarity=0.439  Sum_probs=28.7

Q ss_pred             ccCCchHhhhhhhcC----cccccccccccCCchhhHhhhhhhccc
Q 028666           22 DMFRDQEQHKIHVDI----NEWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        22 D~F~~~E~~k~h~~~----h~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      ..|.....++.|...    ..+.|..|+|.|.+...|..|+...+.
T Consensus         9 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (82)
T 2kmk_A            9 KSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTG   54 (82)
T ss_dssp             CEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHT
T ss_pred             ccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcC
Confidence            467777777776633    346788888888888888888765443

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.91  E-value=0.0069  Score=41.69  Aligned_cols=51  Identities=18%  Similarity=0.441  Sum_probs=39.9

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhcCcc----cccccccccCCchhhHhhhhhhccc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVDINE----WRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~~h~----~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      -+..|+.-  ...|.....++.|...|.    +.|..|+|.|.+...|..|+...+.
T Consensus         7 ~~~~C~~C--~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   61 (96)
T 2dmd_A            7 GPHKCEVC--GKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD   61 (96)
T ss_dssp             CCCCBTTT--TBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCC
T ss_pred             cCeECCCC--CCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCC
Confidence            34567653  468999999999985553    7899999999999999999976543

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.88  E-value=0.0023  Score=45.53  Aligned_cols=42  Identities=24%  Similarity=0.566  Sum_probs=25.8

Q ss_pred             CccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhcc
Q 028666           21 NDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        21 ~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      ...|.....++.|...|    .+.|..|+|.|.+...|..|+...|
T Consensus        16 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   61 (110)
T 2csh_A           16 GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT   61 (110)
T ss_dssp             SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTC
T ss_pred             CCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcC
Confidence            34566666666666332    3567777777777777777765433

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=95.88  E-value=0.0045  Score=32.92  Aligned_cols=23  Identities=30%  Similarity=0.782  Sum_probs=20.5

Q ss_pred             cccccccccCCchhhHhhhhhhc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      +.|..|||.|.+...|..|+...
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h   24 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVH   24 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHc
Confidence            57999999999999999998643

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=95.86  E-value=0.0069  Score=42.57  Aligned_cols=51  Identities=24%  Similarity=0.433  Sum_probs=38.4

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhccc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      -+..|+.-  ...|.....++.|...|    .++|.+|+|.|.+...|..|+...+.
T Consensus        44 ~~~~C~~C--~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~   98 (106)
T 2ee8_A           44 RPYTCDIC--HKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQ   98 (106)
T ss_dssp             CCCBCSSS--CCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHHHHTTS
T ss_pred             CCcCCCCc--cchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHHHHhCC
Confidence            34566653  35788888888888554    37899999999999999999876554

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=95.84  E-value=0.0064  Score=44.46  Aligned_cols=53  Identities=25%  Similarity=0.311  Sum_probs=39.5

Q ss_pred             CCCCCCCCCCccCCchHhhhhhhc--CcccccccccccCCchhhHhhhhhhcccccc
Q 028666           12 SSKCRLHPDNDMFRDQEQHKIHVD--INEWRCGYCKKSFRAEKFLDQHFDNRHNNLL   66 (205)
Q Consensus        12 ~~~C~L~P~~D~F~~~E~~k~h~~--~h~~rC~~C~K~F~sE~~LDlHidnrH~~ll   66 (205)
                      |-.|+.-  ...|.....++.|..  ...+.|..|||.|.+...|..|+...|...+
T Consensus        74 ~~~C~~C--~k~f~~~~~l~~H~~~H~~~~~C~~C~k~f~~~~~l~~H~~~h~~~~v  128 (129)
T 2wbt_A           74 QFVCPLC--LMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCKKHNICV  128 (129)
T ss_dssp             SEECTTT--CCEESSHHHHHHHHHHTCCCCBCTTTCCBCSSHHHHHHHHHHTTCCCC
T ss_pred             CeECCCC--CcccCCHhHHHHHHHHCCCCCCCCCCCcccCCHHHHHHHHHHHCCccC
Confidence            3456543  357888888888875  4567888999999999889999888876543

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=95.83  E-value=0.003  Score=42.95  Aligned_cols=51  Identities=16%  Similarity=0.374  Sum_probs=40.6

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhccc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      -+..|+.-  ...|.....++.|...|    .+.|..|+|.|.+...|..|+...+.
T Consensus        33 ~~~~C~~C--~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~   87 (90)
T 1a1h_A           33 KPFQCRIC--MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR   87 (90)
T ss_dssp             CCEECTTT--CCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHGGGGC
T ss_pred             CCccCCCC--CcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            34567654  35799999999988544    48999999999999999999986543

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.74  E-value=0.01  Score=40.84  Aligned_cols=41  Identities=24%  Similarity=0.298  Sum_probs=33.8

Q ss_pred             CccCCchHhhhhhhcC-cc------------cccccccccCCchhhHhhhhhhc
Q 028666           21 NDMFRDQEQHKIHVDI-NE------------WRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        21 ~D~F~~~E~~k~h~~~-h~------------~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      ...|.....++.|... |.            +.|..|+|.|.+...|..|+...
T Consensus        32 ~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H   85 (95)
T 2ej4_A           32 DRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH   85 (95)
T ss_dssp             CCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhc
Confidence            4589999999888844 43            68999999999999999998753

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=95.72  E-value=0.0029  Score=43.62  Aligned_cols=49  Identities=20%  Similarity=0.461  Sum_probs=38.7

Q ss_pred             CCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhccc
Q 028666           13 SKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        13 ~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      ..|+.-  .-.|.....++.|...|    .+.|..|+|.|.+...|..|+...|.
T Consensus         4 ~~C~~C--~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~   56 (88)
T 1llm_C            4 FQCRIC--MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI   56 (88)
T ss_dssp             EECTTT--CCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH
T ss_pred             CcCCCC--CCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC
Confidence            345543  35788888888887444    47999999999999999999998884

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.67  E-value=0.0028  Score=37.11  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=25.0

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcccc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRHNN   64 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH~~   64 (205)
                      |...-.+.|..|+|.|.+...|..|+...|..
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            34445589999999999999999995455643

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.67  E-value=0.0064  Score=45.36  Aligned_cols=68  Identities=18%  Similarity=0.334  Sum_probs=42.7

Q ss_pred             CCCCCCCCCC---CccCCchHhhhhhhcCc----cccccc--ccccCCchhhHhhhhhhcccccccCCccCchhhhcccc
Q 028666           11 ISSKCRLHPD---NDMFRDQEQHKIHVDIN----EWRCGY--CKKSFRAEKFLDQHFDNRHNNLLNVSHGKCLADLCGAL   81 (205)
Q Consensus        11 l~~~C~L~P~---~D~F~~~E~~k~h~~~h----~~rC~~--C~K~F~sE~~LDlHidnrH~~ll~~~~~~CLad~C~~L   81 (205)
                      -+..|++...   ...|.....++.|...|    .+.|..  |+|.|.+...|..|+...+..    ..-.|-.++|+..
T Consensus        33 ~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~~~~C~~~  108 (155)
T 2gli_A           33 KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE----KPYMCEHEGCSKA  108 (155)
T ss_dssp             SCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTC----CCEECCSTTCCCE
T ss_pred             cceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCC----CCeeCCCCCCCCc
Confidence            3456665443   24688888887777433    477875  888888888888888764332    2235555556544


Q ss_pred             c
Q 028666           82 H   82 (205)
Q Consensus        82 ~   82 (205)
                      .
T Consensus       109 f  109 (155)
T 2gli_A          109 F  109 (155)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.66  E-value=0.0037  Score=42.99  Aligned_cols=52  Identities=21%  Similarity=0.464  Sum_probs=41.7

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhcC------cccccccccccCCchhhHhhhhhhcccc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVDI------NEWRCGYCKKSFRAEKFLDQHFDNRHNN   64 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~~------h~~rC~~C~K~F~sE~~LDlHidnrH~~   64 (205)
                      -+..|+.-  ...|.....++.|...      ..+.|.+|+|.|.+...|..|+...|..
T Consensus        34 ~~~~C~~C--~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           34 KPYSCPVC--GLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             CSEECSSS--CCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHHHTSCC
T ss_pred             CCCcCCCC--CCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHHHhcCC
Confidence            34567653  3579999999999843      3478999999999999999999988864

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.64  E-value=0.0049  Score=42.45  Aligned_cols=52  Identities=19%  Similarity=0.390  Sum_probs=41.8

Q ss_pred             CCCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhccccc
Q 028666           12 SSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRHNNL   65 (205)
Q Consensus        12 ~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH~~l   65 (205)
                      +..|+.-  ...|.....++.|...|    .++|..|+|.|.+...|..|+...|..-
T Consensus        36 ~~~C~~C--~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   91 (96)
T 2dmd_A           36 PYKCKTC--DYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDS   91 (96)
T ss_dssp             SEECSSS--CCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHTTCCSCC
T ss_pred             CEeCCCC--CCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHhcCCC
Confidence            4466653  35899999999998544    4899999999999999999998877643

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=95.62  E-value=0.0072  Score=34.69  Aligned_cols=29  Identities=24%  Similarity=0.534  Sum_probs=24.1

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.++|.+|+|.|.+...|..|+...
T Consensus         6 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   34 (37)
T 1p7a_A            6 STGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             TCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCCCCccCCCCCcccCcHHHHHHHHHHh
Confidence            44445689999999999999999998654

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=95.61  E-value=0.0056  Score=32.85  Aligned_cols=23  Identities=22%  Similarity=0.775  Sum_probs=20.9

Q ss_pred             cccccccccCCchhhHhhhhhhc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      +.|..|||.|.+...|..|+...
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h   25 (29)
T 1ard_A            3 FVCEVCTRAFARQEHLKRHYRSH   25 (29)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             eECCCCCcccCCHHHHHHHHHHh
Confidence            68999999999999999998764

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.54  E-value=0.0069  Score=40.76  Aligned_cols=53  Identities=21%  Similarity=0.435  Sum_probs=40.1

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhc-Cc-------ccccccccccCCchhhHhhhhhhccccc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVD-IN-------EWRCGYCKKSFRAEKFLDQHFDNRHNNL   65 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~-~h-------~~rC~~C~K~F~sE~~LDlHidnrH~~l   65 (205)
                      -+..|+.-  ...|.....++.|.. .|       .++|..|+|.|.+...|..|+...|...
T Consensus        14 k~~~C~~C--~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~   74 (86)
T 1x6h_A           14 KPYACSHC--DKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD   74 (86)
T ss_dssp             CCEECSSS--SCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCC
T ss_pred             CCCcCCCC--CCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCC
Confidence            34566653  357888888888873 22       3789999999999999999998877654

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=95.53  E-value=0.0055  Score=34.80  Aligned_cols=27  Identities=15%  Similarity=0.385  Sum_probs=23.2

Q ss_pred             CcccccccccccCCchhhHhhhhhhcc
Q 028666           36 INEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        36 ~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      ...+.|.+|+|.|.+...|..|+...+
T Consensus         5 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            5 KRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            345799999999999999999987644

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=95.50  E-value=0.0047  Score=33.27  Aligned_cols=23  Identities=26%  Similarity=0.470  Sum_probs=20.7

Q ss_pred             cccccccccCCchhhHhhhhhhc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      +.|..|||.|.+...|..|+...
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 1rik_A            3 FACPECPKRFMRSDHLTLHILLH   25 (29)
T ss_dssp             EECSSSSCEESCSHHHHHHHTGG
T ss_pred             ccCCCCCchhCCHHHHHHHHHHh
Confidence            57999999999999999998653

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.50  E-value=0.005  Score=35.40  Aligned_cols=31  Identities=23%  Similarity=0.603  Sum_probs=25.2

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhccc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      |.....+.|..|||.|.+...|..|+...+.
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~   34 (37)
T 2elo_A            4 GSSGRSYSCPVCEKSFSEDRLIKSHIKTNHP   34 (37)
T ss_dssp             CCCCCCCEETTTTEECSSHHHHHHHHHHHCS
T ss_pred             CCCCCCcCCCCCCCccCCHHHHHHHHHHHcC
Confidence            3344568999999999999999999976543

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=95.47  E-value=0.0036  Score=41.66  Aligned_cols=49  Identities=22%  Similarity=0.409  Sum_probs=37.8

Q ss_pred             CCCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhcc
Q 028666           12 SSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        12 ~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      +..|+.-  ...|.....++.|...|    .++|..|+|.|.+...|..|+...+
T Consensus        29 ~~~C~~C--~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~   81 (82)
T 2kmk_A           29 PYPCQYC--GKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT   81 (82)
T ss_dssp             CEECSSS--CCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHHC
T ss_pred             CeeCCcC--ChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhhC
Confidence            4566653  35788888888887443    4889999999999999999987643

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.45  E-value=0.011  Score=42.19  Aligned_cols=50  Identities=18%  Similarity=0.301  Sum_probs=40.7

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhcc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      -+..|+.-  ...|.....++.|...|    .++|..|+|.|.+...|..|+...|
T Consensus         6 ~~~~C~~C--~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~   59 (124)
T 2dlq_A            6 SGVECPTC--HKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC   59 (124)
T ss_dssp             SSCCCTTT--CCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCC
T ss_pred             CCCCCCCC--CCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhh
Confidence            34567654  35799999999998443    5899999999999999999998765

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=95.40  E-value=0.0051  Score=33.04  Aligned_cols=23  Identities=17%  Similarity=0.508  Sum_probs=20.5

Q ss_pred             ccccccccccCCchhhHhhhhhh
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      .+.|..|||.|.+...|..|+..
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHHH
Confidence            36899999999999999999853

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=95.38  E-value=0.0061  Score=32.47  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=20.7

Q ss_pred             cccccccccCCchhhHhhhhhhc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      +.|.+|||.|.+...|..|+...
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h   25 (29)
T 2m0e_A            3 HKCPHCDKKFNQVGNLKAHLKIH   25 (29)
T ss_dssp             CCCSSCCCCCCTTTHHHHHHHHH
T ss_pred             CcCCCCCcccCCHHHHHHHHHHh
Confidence            68999999999999999998654

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=95.36  E-value=0.0058  Score=32.81  Aligned_cols=24  Identities=25%  Similarity=0.713  Sum_probs=21.2

Q ss_pred             ccccccccccCCchhhHhhhhhhc
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      .++|..|||.|.+...|..|+...
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~h   26 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLETH   26 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHTT
T ss_pred             CccCCCCCcccCCHHHHHHHHHHh
Confidence            368999999999999999998654

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=95.35  E-value=0.0059  Score=34.43  Aligned_cols=28  Identities=25%  Similarity=0.501  Sum_probs=23.7

Q ss_pred             CcccccccccccCCchhhHhhhhhhccc
Q 028666           36 INEWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        36 ~h~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      .-.+.|..|+|.|.+...|..|+...+.
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~   32 (35)
T 2elx_A            5 SSGYVCALCLKKFVSSIRLRSHIREVHG   32 (35)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHTSC
T ss_pred             CCCeECCCCcchhCCHHHHHHHHHHHcC
Confidence            3457999999999999999999976543

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=95.34  E-value=0.0057  Score=32.87  Aligned_cols=23  Identities=22%  Similarity=0.674  Sum_probs=20.6

Q ss_pred             ccccccccccCCchhhHhhhhhh
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      .+.|..|||.|.+...|..|+..
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRV   25 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTT
T ss_pred             CccCCCCCcccCCHHHHHHHHHh
Confidence            36899999999999999999864

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=95.31  E-value=0.0033  Score=39.88  Aligned_cols=30  Identities=23%  Similarity=0.430  Sum_probs=24.4

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|..|||.|.+...|..|+...+
T Consensus        19 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   48 (54)
T 1yui_A           19 SQSEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             HTSSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             cCCCCCccCCCCCcccCCHHHHHHHHHHhc
Confidence            334456899999999999999999997543

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.27  E-value=0.015  Score=41.26  Aligned_cols=46  Identities=22%  Similarity=0.372  Sum_probs=35.0

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhcCc--ccccccccccCCchhhHhhhh
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVDIN--EWRCGYCKKSFRAEKFLDQHF   58 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~~h--~~rC~~C~K~F~sE~~LDlHi   58 (205)
                      -+..|+.-  ...|.....++.|...|  .+.|..|+|.|.+...|..|+
T Consensus        15 ~~~~C~~C--~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~~~~l~~H~   62 (107)
T 1wjp_A           15 EVYQCRLC--NAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHE   62 (107)
T ss_dssp             CCCBCTTT--CCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSSHHHHHHHH
T ss_pred             cCeECCCC--CCccCCHHHHHHHHHHCCCCccCCCCCCccCCHHHHHHHH
Confidence            34566653  35788888888888544  368999999999999999998

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=95.25  E-value=0.0054  Score=41.50  Aligned_cols=47  Identities=23%  Similarity=0.492  Sum_probs=37.4

Q ss_pred             CCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhccc
Q 028666           14 KCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        14 ~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      .|..-  .-.|.....++.|..+|    .+.|.+|||.|.....|..|+.. |.
T Consensus         6 ~C~~C--~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~-Ht   56 (60)
T 4gzn_C            6 FCNFC--GKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV-HQ   56 (60)
T ss_dssp             ECTTT--CCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGG-GS
T ss_pred             cCCCC--CCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCc-cC
Confidence            45542  35799999999888665    47999999999999999999864 54

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.24  E-value=0.0097  Score=35.88  Aligned_cols=30  Identities=23%  Similarity=0.358  Sum_probs=24.7

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |.....+.|..|+|.|.+...|..|+...+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ep1_A            7 GTGEKPYECSDCGKSFIKKSQLHVHQRIHT   36 (46)
T ss_dssp             CSSCCSSCCSSSCCCCSSHHHHHHHHGGGS
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHHhC
Confidence            444456899999999999999999997643

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=95.22  E-value=0.011  Score=39.97  Aligned_cols=50  Identities=16%  Similarity=0.356  Sum_probs=38.9

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhh
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      -+..|++......|.....++.|...|    .++|..|+|.|.+...|..|+..
T Consensus        34 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   87 (89)
T 2wbs_A           34 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR   87 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHGGG
T ss_pred             CCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHHHHHh
Confidence            455777755566898888888887443    47899999999999999999853

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.18  E-value=0.0085  Score=35.33  Aligned_cols=29  Identities=24%  Similarity=0.407  Sum_probs=24.1

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.++|..|||.|.+...|..|+...
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   34 (42)
T 2ytb_A            6 SGGEKPYRCDQCGKAFSQKGSLIVHIRVH   34 (42)
T ss_dssp             CCSCCSBCCTTTTCCBSSHHHHHTTGGGT
T ss_pred             cCCCCCeeCCCccchhCCHHHHHHHHHHh
Confidence            33445689999999999999999998654

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=94.17  E-value=0.0034  Score=33.46  Aligned_cols=22  Identities=27%  Similarity=0.594  Sum_probs=20.0

Q ss_pred             cccccccccCCchhhHhhhhhh
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      +.|..|||.|.+...|..|+..
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            3 YVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            6899999999999999999854

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=95.15  E-value=0.014  Score=43.75  Aligned_cols=63  Identities=19%  Similarity=0.406  Sum_probs=45.6

Q ss_pred             CCCCCCCCccCCchHhhhhhhcCc----cccccc--ccccCCchhhHhhhhhhcccccccCCccCchhhhccccc
Q 028666           14 KCRLHPDNDMFRDQEQHKIHVDIN----EWRCGY--CKKSFRAEKFLDQHFDNRHNNLLNVSHGKCLADLCGALH   82 (205)
Q Consensus        14 ~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~--C~K~F~sE~~LDlHidnrH~~ll~~~~~~CLad~C~~L~   82 (205)
                      .|+.-  ...|.....++.|...|    .+.|..  |+|.|.+...|..|+...+..    ..-.|-.+.|+...
T Consensus        64 ~C~~C--~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~----~~~~C~~~~C~k~f  132 (155)
T 2rpc_A           64 ECPRE--GKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGE----KPFKCEFEGCDRRF  132 (155)
T ss_dssp             TCTTS--SCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSS----CSBCCSSTTCCCCB
T ss_pred             CCCCc--ccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCC----CCccCCCCCCCCcc
Confidence            45543  35799999998888554    489998  999999999999999755432    23467666676554

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=95.14  E-value=0.009  Score=42.45  Aligned_cols=53  Identities=19%  Similarity=0.414  Sum_probs=42.8

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhccc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      -+..|++......|.....++.|...|    .+.|..|+|.|.+...|..|+...+.
T Consensus        35 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   91 (119)
T 2jp9_A           35 KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTG   91 (119)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHT
T ss_pred             CCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHHHHHhcC
Confidence            356787655667899999999988544    48999999999999999999976543

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.14  E-value=0.0075  Score=44.96  Aligned_cols=68  Identities=21%  Similarity=0.343  Sum_probs=52.4

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhcCc----cccccc--ccccCCchhhHhhhhhhcccccccCCccCchhhhcccc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGY--CKKSFRAEKFLDQHFDNRHNNLLNVSHGKCLADLCGAL   81 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~--C~K~F~sE~~LDlHidnrH~~ll~~~~~~CLad~C~~L   81 (205)
                      -+..|++......|.....++.|...|    .+.|..  |+|.|.+...|..|+...|..-   ..-.|-.++|+..
T Consensus        66 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~---~~~~C~~~~C~~~  139 (155)
T 2gli_A           66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE---KPYVCKLPGCTKR  139 (155)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSC---CCEECCSTTTCCE
T ss_pred             CCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCC---CCeeCCCCCCccc
Confidence            467888766677899999999998544    389998  9999999999999998778542   2235665566653

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=95.12  E-value=0.02  Score=42.84  Aligned_cols=56  Identities=23%  Similarity=0.300  Sum_probs=41.1

Q ss_pred             CccCCchHhhhhhhcC-cc------------cccccccccCCchhhHhhhhhhcccccccCCccCchhhhccc
Q 028666           21 NDMFRDQEQHKIHVDI-NE------------WRCGYCKKSFRAEKFLDQHFDNRHNNLLNVSHGKCLADLCGA   80 (205)
Q Consensus        21 ~D~F~~~E~~k~h~~~-h~------------~rC~~C~K~F~sE~~LDlHidnrH~~ll~~~~~~CLad~C~~   80 (205)
                      ...|.....++.|... |.            +.|..|+|.|.+...|..|+...+..    ..-.|-.+.|+.
T Consensus        32 ~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~~~~C~~  100 (155)
T 2rpc_A           32 DRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE----KPFPCPFPGCGK  100 (155)
T ss_dssp             CCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCC----CSEECSCTTTCC
T ss_pred             CcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCC----CcccCCcCCCCC
Confidence            3589999999999843 43            58999999999999999999865432    223455444543

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=95.12  E-value=0.0084  Score=35.49  Aligned_cols=30  Identities=23%  Similarity=0.418  Sum_probs=24.8

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|.+|+|.|.+...|..|+...+
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   34 (42)
T 2el5_A            5 SSGENPYECSECGKAFNRKDQLISHQRTHA   34 (42)
T ss_dssp             SSSCCSEECSSSCCEESSHHHHHHHHGGGC
T ss_pred             CCCCCCccCCCcChhhCCHHHHHHHHHhcC
Confidence            444456899999999999999999997644

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.10  E-value=0.012  Score=42.01  Aligned_cols=39  Identities=18%  Similarity=0.266  Sum_probs=24.4

Q ss_pred             CchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhccc
Q 028666           25 RDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        25 ~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      .....++.|...|    .+.|.+|+|.|.+...|..|+...|.
T Consensus        63 ~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             CCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTT
T ss_pred             ccHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCC
Confidence            5555555555333    35677777777777777777766554

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=95.10  E-value=0.024  Score=43.92  Aligned_cols=51  Identities=22%  Similarity=0.394  Sum_probs=41.6

Q ss_pred             CCCCCCCCCCccCCchHhhhhhhcCcc----ccccc--ccccCCchhhHhhhhhhcc
Q 028666           12 SSKCRLHPDNDMFRDQEQHKIHVDINE----WRCGY--CKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        12 ~~~C~L~P~~D~F~~~E~~k~h~~~h~----~rC~~--C~K~F~sE~~LDlHidnrH   62 (205)
                      +..|+++-....|.....++.|...|.    +.|..  |+|.|.+...|..|+...+
T Consensus       104 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~  160 (190)
T 1tf6_A          104 VYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA  160 (190)
T ss_dssp             CCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSC
T ss_pred             eeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhC
Confidence            456765555678999999999996664    89988  9999999999999997543

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.09  E-value=0.011  Score=35.65  Aligned_cols=30  Identities=20%  Similarity=0.430  Sum_probs=24.5

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|..|+|.|.+...|..|+...+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2ytn_A            7 GTGKKPYKCNECGKVFTQNSHLARHRGIHT   36 (46)
T ss_dssp             CSCCSSCBCTTTCCBCSSHHHHHHHGGGTS
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHhhhcC
Confidence            444456899999999999999999986543

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.05  E-value=0.011  Score=35.54  Aligned_cols=31  Identities=23%  Similarity=0.277  Sum_probs=24.9

Q ss_pred             hhhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           32 IHVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        32 ~h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      +|...-.+.|..|+|.|.+...|..|+...+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eq4_A            6 SGTGEKLYNCKECGKSFSRAPCLLKHERLHS   36 (46)
T ss_dssp             CSSCCCCCCBTTTTBCCSCHHHHHHHHHHCC
T ss_pred             cCCCCCCeECCCCCCccCchHHHHHHHHhcC
Confidence            3444456899999999999999999986543

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=95.01  E-value=0.0075  Score=32.65  Aligned_cols=23  Identities=17%  Similarity=0.537  Sum_probs=20.3

Q ss_pred             ccccccccccCCchhhHhhhhhh
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      .+.|..|||.|.....|..|+..
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTT
T ss_pred             CcCCCCCCcccCCHHHHHHHHHh
Confidence            36899999999999999999853

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.01  E-value=0.01  Score=35.94  Aligned_cols=31  Identities=23%  Similarity=0.378  Sum_probs=25.1

Q ss_pred             hhhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           32 IHVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        32 ~h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      +|...-.+.|..|+|.|.+...|..|+....
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2en9_A            6 SGAGKKLFKCNECKKTFTQSSSLTVHQRIHT   36 (46)
T ss_dssp             SCCSSCCCBCTTTCCBCSSHHHHHHHHHHHT
T ss_pred             CCCCCCCEECCccCcccCCHHHHHHHHHHcC
Confidence            3444556899999999999999999987543

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.98  E-value=0.012  Score=35.02  Aligned_cols=28  Identities=25%  Similarity=0.584  Sum_probs=23.6

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhh
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      |...-.+.|..|||.|.+...|..|+..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2en7_A            7 GTGMKPYVCNECGKAFRSKSYLIIHTRT   34 (44)
T ss_dssp             SSSSSSSCCTTTCCCCSSHHHHHHHHTT
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHhhh
Confidence            4444568999999999999999999954

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.97  E-value=0.012  Score=33.45  Aligned_cols=27  Identities=22%  Similarity=0.353  Sum_probs=22.9

Q ss_pred             cCcccccccccccCCchhhHhhhhhhc
Q 028666           35 DINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        35 ~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      ....+.|..|+|.|.+...|..|+...
T Consensus         6 ~~~~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elr_A            6 SGKTHLCDMCGKKFKSKGTLKSHKLLH   32 (36)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CCCCeecCcCCCCcCchHHHHHHHHHh
Confidence            345689999999999999999998653

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.97  E-value=0.0097  Score=35.12  Aligned_cols=30  Identities=27%  Similarity=0.379  Sum_probs=24.4

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|.+|+|.|.+...|..|+...+
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   34 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERIHT   34 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGGCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHHhC
Confidence            334456899999999999999999986543

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=94.96  E-value=0.01  Score=35.98  Aligned_cols=31  Identities=19%  Similarity=0.357  Sum_probs=25.2

Q ss_pred             hhhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           32 IHVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        32 ~h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      +|.....+.|..|+|.|.+...|..|+...+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ely_A            6 SGTGEKPFKCVECGKGFSRRSALNVHHKLHT   36 (46)
T ss_dssp             CCCCCCSBCCSSSCCCBSSTTHHHHHHHHHS
T ss_pred             CCCCCCCcccCccCcccCCHHHHHHHHHHcC
Confidence            3444556899999999999999999997643

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.96  E-value=0.012  Score=35.62  Aligned_cols=31  Identities=23%  Similarity=0.273  Sum_probs=25.1

Q ss_pred             hhhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           32 IHVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        32 ~h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      +|.....+.|..|+|.|.+...|..|+...+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2epz_A            6 SGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT   36 (46)
T ss_dssp             SCCCCCSBCCTTTCCCBSSHHHHHHHHTTTT
T ss_pred             CcCCCCCeECCCCCceeCCHHHHHHHHHHhC
Confidence            3444556899999999999999999986543

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.96  E-value=0.012  Score=34.95  Aligned_cols=30  Identities=20%  Similarity=0.390  Sum_probs=24.4

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|..|+|.|.+...|..|+...+
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   35 (42)
T 2eos_A            6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHT   35 (42)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHTTTTS
T ss_pred             cCCCCCEECCCCCCccCCHHHHHHHHHhcC
Confidence            334456899999999999999999987543

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.94  E-value=0.012  Score=35.56  Aligned_cols=29  Identities=24%  Similarity=0.306  Sum_probs=24.0

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |.....+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2emg_A            7 GTGENPFICSECGKVFTHKTNLIIHQKIH   35 (46)
T ss_dssp             CCSCCSCBCTTTCCBCSSHHHHHHHHTTT
T ss_pred             CCCCCCEECCccCcccCCHHHHHHHHHHh
Confidence            33445689999999999999999998653

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.94  E-value=0.012  Score=35.42  Aligned_cols=29  Identities=24%  Similarity=0.255  Sum_probs=24.2

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eop_A            7 GTGEKPHECRECGKSFSFNSQLIVHQRIH   35 (46)
T ss_dssp             CCCCCSCBCTTTCCBCSSHHHHHHHHTTT
T ss_pred             cCCCCCeeCCCCCchhCCHHHHHHHHHHc
Confidence            44445689999999999999999998763

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.93  E-value=0.012  Score=35.54  Aligned_cols=29  Identities=21%  Similarity=0.441  Sum_probs=23.9

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.++|.+|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2yti_A            7 GTGEKPYKCNECGKVFTQNSHLARHRGIH   35 (46)
T ss_dssp             CSCCCTTCCSSSCCCCSSHHHHHHHHTTT
T ss_pred             CCCCcCeECCCCCcccCChhHHHHHhHhc
Confidence            33445689999999999999999998653

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.92  E-value=0.014  Score=35.24  Aligned_cols=30  Identities=20%  Similarity=0.359  Sum_probs=24.5

Q ss_pred             hhhcCcccccccccccCCchhhHhhhhhhc
Q 028666           32 IHVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        32 ~h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      +|...-.+.|..|+|.|.+...|..|+...
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eq2_A            6 SGTGGKPYQCNECGKAFSQTSKLARHQRVH   35 (46)
T ss_dssp             SSSSSCSSSCCSSCCCCSSHHHHHHHGGGG
T ss_pred             ccCCCCCeECCCCCcccCCHHHHHHHHHHc
Confidence            344455689999999999999999998653

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.91  E-value=0.012  Score=35.45  Aligned_cols=30  Identities=20%  Similarity=0.402  Sum_probs=24.5

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|..|||.|.+...|..|+...+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytr_A            7 GTGEKPYKCNECGKAFSQTSKLARHQRIHT   36 (46)
T ss_dssp             CSSCCTTCCTTTCCCCSSHHHHHHHHTTTT
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhcC
Confidence            344456899999999999999999986543

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.91  E-value=0.013  Score=34.47  Aligned_cols=29  Identities=24%  Similarity=0.440  Sum_probs=24.1

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|+|.|.+...|..|+...
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   33 (42)
T 2yte_A            5 SSGEKPYSCAECKETFSDNNRLVQHQKMH   33 (42)
T ss_dssp             SCSCCSCBCTTTCCBCSSHHHHHHHHHHT
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHHh
Confidence            44445689999999999999999998753

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.91  E-value=0.013  Score=35.49  Aligned_cols=30  Identities=20%  Similarity=0.492  Sum_probs=24.7

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|..|+|.|.+...|..|+...+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytq_A            7 GAGEKPYGCSECGKAFSSKSYLIIHMRTHS   36 (46)
T ss_dssp             SSCCCSCBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             cCCCCCcCCCccChhhCChHHHHHHHHHhC
Confidence            444456899999999999999999987643

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.88  E-value=0.014  Score=41.39  Aligned_cols=49  Identities=20%  Similarity=0.316  Sum_probs=31.3

Q ss_pred             CCCCCCCCCccCCchHhhhhhhc---CcccccccccccCCchhhHhhhhhhccc
Q 028666           13 SKCRLHPDNDMFRDQEQHKIHVD---INEWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        13 ~~C~L~P~~D~F~~~E~~k~h~~---~h~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      ..|+.-  ...|.....++.|..   ...+.|.+|+|.|.+...|..|+...|.
T Consensus        43 ~~C~~C--~~~f~~~~~l~~H~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   94 (107)
T 1wjp_A           43 AVCPYC--SLRFFSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN   94 (107)
T ss_dssp             BCCTTT--CCCBSSHHHHHHHHHHCSTGGGEEGGGTEECSSHHHHHHHHHHTSC
T ss_pred             ccCCCC--CCccCCHHHHHHHHHcCCCCCccCccccchhCCHHHHHHHHHHHcC
Confidence            345542  245666666666652   2236777777777777777777776665

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.87  E-value=0.013  Score=35.45  Aligned_cols=30  Identities=27%  Similarity=0.434  Sum_probs=24.6

Q ss_pred             hhhcCcccccccccccCCchhhHhhhhhhc
Q 028666           32 IHVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        32 ~h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      +|...-.+.|..|+|.|.+...|..|+...
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eq1_A            6 SGTGEKPYKCNECGKAFRAHSNLTTHQVIH   35 (46)
T ss_dssp             CCCCSCCCCCTTTTCCCSSHHHHHHHHTTT
T ss_pred             ccCCCCCeECCcCChhhCCHHHHHHHHHHh
Confidence            344455689999999999999999998753

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=93.87  E-value=0.0047  Score=33.43  Aligned_cols=25  Identities=20%  Similarity=0.457  Sum_probs=21.4

Q ss_pred             ccccccccccCCchhhHhhhhhhcc
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      .+.|.+|||.|.+...|..|+...+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            3689999999999999999986543

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=94.85  E-value=0.019  Score=44.57  Aligned_cols=68  Identities=18%  Similarity=0.297  Sum_probs=51.6

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhh-cCc-----cccc--ccccccCCchhhHhhhhhhcccccccCCccCchhhhccccc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHV-DIN-----EWRC--GYCKKSFRAEKFLDQHFDNRHNNLLNVSHGKCLADLCGALH   82 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~-~~h-----~~rC--~~C~K~F~sE~~LDlHidnrH~~ll~~~~~~CLad~C~~L~   82 (205)
                      -+..|+.+-....|.....++.|. ..|     .+.|  ..|+|.|.+...|..|+...+..    ..-.|-.++|+...
T Consensus        71 ~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~----~~~~C~~~~C~k~F  146 (190)
T 1tf6_A           71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ----LPYECPHEGCDKRF  146 (190)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSS----CSSBCCSSSCCCBC
T ss_pred             CceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCC----CCccCCCCCCCchh
Confidence            345777555567899999999998 666     4899  89999999999999999865432    23467666677544

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.84  E-value=0.013  Score=35.37  Aligned_cols=29  Identities=21%  Similarity=0.411  Sum_probs=24.0

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2enf_A            7 GTGEKPYKCNECGKVFTQNSHLVRHRGIH   35 (46)
T ss_dssp             CCCCCSCBCSSSCCBCSSHHHHHHHHTTT
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHhh
Confidence            33445689999999999999999998653

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=94.83  E-value=0.0096  Score=35.10  Aligned_cols=30  Identities=27%  Similarity=0.389  Sum_probs=24.5

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|.+|||.|.+...|..|+....
T Consensus         6 H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~   35 (42)
T 2epc_A            6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCS   35 (42)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHhhhcC
Confidence            334456899999999999999999986543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=94.83  E-value=0.01  Score=42.65  Aligned_cols=64  Identities=20%  Similarity=0.376  Sum_probs=44.6

Q ss_pred             CCCCCCCCCCccCCchHhhhhhhcCc----cccccc--ccccCCchhhHhhhhhhcccccccCCccCchhhhcccc
Q 028666           12 SSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGY--CKKSFRAEKFLDQHFDNRHNNLLNVSHGKCLADLCGAL   81 (205)
Q Consensus        12 ~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~--C~K~F~sE~~LDlHidnrH~~ll~~~~~~CLad~C~~L   81 (205)
                      +..|+.-  ...|.....++.|...|    .+.|..  |+|.|.+...|..|+...+..    ..-.|-.+.|+..
T Consensus        34 ~~~C~~C--~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~----~~~~C~~~~C~~~  103 (124)
T 1ubd_C           34 VHVCAEC--GKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD----RPYVCPFDGCNKK  103 (124)
T ss_dssp             CEECTTT--CCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCC----CCCCCCSTTCCCC
T ss_pred             CeECCCC--CchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCC----CceECCCCCCCCc
Confidence            3456543  35788888888888555    378976  999999999999998765432    2336655566654

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.81  E-value=0.01  Score=35.98  Aligned_cols=30  Identities=20%  Similarity=0.340  Sum_probs=24.7

Q ss_pred             hhhcCcccccccccccCCchhhHhhhhhhc
Q 028666           32 IHVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        32 ~h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      +|...-.+.|..|||.|.+...|..|+...
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emf_A            6 SGTGGKHFECTECGKAFTRKSTLSMHQKIH   35 (46)
T ss_dssp             SSSSSCCEECSSSCCEESCHHHHHHHGGGT
T ss_pred             ccCCCCCeECCCCCchhCCHHHHHHHHHHh
Confidence            344445689999999999999999999754

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=93.77  E-value=0.0052  Score=33.32  Aligned_cols=23  Identities=26%  Similarity=0.496  Sum_probs=20.4

Q ss_pred             cccccccccCCchhhHhhhhhhc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      +.|.+|||.|.+...|..|+...
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 2lvt_A            3 CQCVMCGKAFTQASSLIAHVRQH   25 (29)
Confidence            57999999999999999998643

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.75  E-value=0.01  Score=42.09  Aligned_cols=53  Identities=17%  Similarity=0.377  Sum_probs=41.7

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhccccc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRHNNL   65 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH~~l   65 (205)
                      -+..|+.-  ...|.....++.|...|    .++|.+|+|.|.+...|..|+...|...
T Consensus        36 ~~~~C~~C--~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~   92 (110)
T 2csh_A           36 RPYGCGVC--GKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSY   92 (110)
T ss_dssp             CSEECTTT--SCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHHHHHHHH
T ss_pred             cCccCCCC--CcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHHHccccc
Confidence            34567653  35788888888888655    4789999999999999999998888754

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.74  E-value=0.011  Score=35.77  Aligned_cols=29  Identities=24%  Similarity=0.394  Sum_probs=24.2

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ep3_A            7 GTGEKPYRCAECGKAFTDRSNLFTHQKIH   35 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCeECCCCCchhCCHHHHHHHHHHc
Confidence            44445689999999999999999999653

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.74  E-value=0.015  Score=41.88  Aligned_cols=49  Identities=22%  Similarity=0.336  Sum_probs=33.1

Q ss_pred             CCCCCCCCCccC-CchHhhhhhhcCc---ccccccccccCCchhhHhhhhhhccc
Q 028666           13 SKCRLHPDNDMF-RDQEQHKIHVDIN---EWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        13 ~~C~L~P~~D~F-~~~E~~k~h~~~h---~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      ..|+.-  ...| .....++.|...|   .+.|..|||.|.+...|..|+...|.
T Consensus        35 ~~C~~C--~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           35 VSCPTC--QAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             EECTTT--CSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             cCCCCC--CCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHHHHHHHhHHhcC
Confidence            356542  3467 6777777776433   45688888888888888888555665

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=94.73  E-value=0.016  Score=34.94  Aligned_cols=29  Identities=21%  Similarity=0.503  Sum_probs=24.0

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2em0_A            7 GMGEKTWKCRECDMCFSQASSLRLHQNVH   35 (46)
T ss_dssp             SCCCCCCCCSSSCCCCSSHHHHHHHGGGG
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHc
Confidence            33445689999999999999999998763

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.72  E-value=0.015  Score=35.37  Aligned_cols=30  Identities=27%  Similarity=0.512  Sum_probs=24.6

Q ss_pred             hhhcCcccccccccccCCchhhHhhhhhhc
Q 028666           32 IHVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        32 ~h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      +|...-.++|..|+|.|.+...|..|+...
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eon_A            6 SGTGEKPYKCQVCGKAFRVSSHLVQHHSVH   35 (46)
T ss_dssp             SCSSCCSCBCSSSCCBCSSHHHHHHHTTTT
T ss_pred             CCCCCcccCCCCCCcccCcHHHHHHHHHhc
Confidence            344455689999999999999999998653

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=94.71  E-value=0.012  Score=35.52  Aligned_cols=29  Identities=21%  Similarity=0.447  Sum_probs=24.1

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |.....+.|..|||.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2el4_A            7 GTGVKPYGCSQCAKTFSLKSQLIVHQRSH   35 (46)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHGGGS
T ss_pred             CCCCCceECCCCCchhCCHHHHHHHHHHh
Confidence            33445689999999999999999998653

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.71  E-value=0.012  Score=35.58  Aligned_cols=30  Identities=20%  Similarity=0.391  Sum_probs=24.8

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.++|..|||.|.+...|..|+...+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eml_A            7 GTGEKPYECSVCGKAFSHRQSLSVHQRIHS   36 (46)
T ss_dssp             CSSCCSEECSSSCCEESSHHHHHHHHGGGS
T ss_pred             cCCCCCeeCCCcCCccCCHHHHHHHHHHhc
Confidence            444456899999999999999999987643

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=94.70  E-value=0.012  Score=35.59  Aligned_cols=31  Identities=23%  Similarity=0.401  Sum_probs=25.2

Q ss_pred             hhhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           32 IHVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        32 ~h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      +|...-.+.|..|||.|.+...|..|+...+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ema_A            6 SGTGEKRYKCNECGKVFSRNSQLSQHQKIHT   36 (46)
T ss_dssp             SCTTSCCEECSSSCCEESSHHHHHHHHTGGG
T ss_pred             CCCCCcCcCCCCCcchhCCHHHHHHHHHhcC
Confidence            3444556899999999999999999987643

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.70  E-value=0.013  Score=35.28  Aligned_cols=30  Identities=20%  Similarity=0.389  Sum_probs=24.5

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |.....++|..|+|.|.+...|..|+...+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eq3_A            7 GTGEKPYECNQCGKAFSVRSSLTTHQAIHT   36 (46)
T ss_dssp             SCCCCSSEETTTTEECSSHHHHHHHHTTSC
T ss_pred             CCCCCCeECCCCChhhCCHHHHHHHHHHhC
Confidence            344456899999999999999999986543

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.67  E-value=0.016  Score=35.02  Aligned_cols=30  Identities=23%  Similarity=0.422  Sum_probs=24.4

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|..|+|.|.+...|..|+...+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eoq_A            7 GTGEKPFKCDICGKSFCGRSRLNRHSMVHT   36 (46)
T ss_dssp             SSSSCSCCCSSSCCCCSSHHHHHHHHHHTT
T ss_pred             CCCCCCcCCCcCCchhCCHHHHHHHHHHcC
Confidence            334456899999999999999999987543

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.66  E-value=0.015  Score=35.05  Aligned_cols=29  Identities=21%  Similarity=0.434  Sum_probs=24.1

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.++|..|+|.|.+...|..|+...
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2eoe_A            7 GTGEKPYKCNECGKVFTQNSHLANHQRIH   35 (46)
T ss_dssp             CCCCCSSEETTTTEECSSHHHHHHHHGGG
T ss_pred             CCCCCCeECCCcChhhCCHHHHHHHHHHc
Confidence            33445689999999999999999999654

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.66  E-value=0.016  Score=35.07  Aligned_cols=29  Identities=21%  Similarity=0.457  Sum_probs=24.0

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em6_A            7 GMGEKCYKCDVCGKEFSQSSHLQTHQRVH   35 (46)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHTTT
T ss_pred             cCCCCCeECCCCCcccCCHHHHHHHHHHc
Confidence            44445689999999999999999998643

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.66  E-value=0.014  Score=34.82  Aligned_cols=29  Identities=24%  Similarity=0.401  Sum_probs=24.1

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2eoj_A            7 GTGENPYECCECGKVFSRKDQLVSHQKTH   35 (44)
T ss_dssp             SSSCCSCEETTTTEECSSHHHHHHHHTTS
T ss_pred             cCCCcCeeCCCCCCccCCHHHHHHHHHHc
Confidence            33445689999999999999999998754

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.65  E-value=0.014  Score=35.13  Aligned_cols=29  Identities=24%  Similarity=0.411  Sum_probs=23.9

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|||.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eme_A            7 GSGEKPYVCDYCGKAFGLSAELVRHQRIH   35 (46)
T ss_dssp             TCCCCSEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCCCCCeECCCCChhhCCHHHHHHHHHhc
Confidence            33445689999999999999999999643

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.64  E-value=0.015  Score=35.03  Aligned_cols=30  Identities=23%  Similarity=0.374  Sum_probs=24.3

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|..|||.|.+...|..|+...+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eov_A            7 GTGEKPYKCSDCGKSFTWKSRLRIHQKCHT   36 (46)
T ss_dssp             CSSCCSCBCSSSCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCCCccCCccChhhCCHHHHHHHHHhcC
Confidence            334456899999999999999999986543

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.64  E-value=0.01  Score=35.88  Aligned_cols=30  Identities=23%  Similarity=0.494  Sum_probs=24.6

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |.....+.|..|+|.|.+...|..|+...+
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2em3_A            7 GTGEKPYECKVCSKAFTQKAHLAQHQKTHT   36 (46)
T ss_dssp             CSSCCSEECSSSCCEESSHHHHHHHHHHHC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHHhC
Confidence            344456899999999999999999996543

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.63  E-value=0.017  Score=34.94  Aligned_cols=31  Identities=23%  Similarity=0.423  Sum_probs=25.0

Q ss_pred             hhhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           32 IHVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        32 ~h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      +|...-.+.|..|+|.|.+...|..|+...+
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2enh_A            6 SGTGEKPYECDVCRKAFSHHASLTQHQRVHS   36 (46)
T ss_dssp             CCCCSSSCBCTTTCCBCSSSHHHHHHGGGSC
T ss_pred             CcCCCCCcCCCCcCchhCCHHHHHHHHHHhC
Confidence            3444556899999999999999999987543

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.62  E-value=0.011  Score=35.54  Aligned_cols=29  Identities=31%  Similarity=0.538  Sum_probs=24.1

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yrj_A            7 GTGEKPYRCGECGKAFAQKANLTQHQRIH   35 (46)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHc
Confidence            44445689999999999999999998653

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.59  E-value=0.015  Score=35.35  Aligned_cols=31  Identities=23%  Similarity=0.195  Sum_probs=25.1

Q ss_pred             hhhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           32 IHVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        32 ~h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      .|...-.++|.+|+|.|.+...|..|+...+
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2eom_A            6 SGHGERGHRCSDCGKFFLQASNFIQHRRIHT   36 (46)
T ss_dssp             CCCCCSSCCCSSSCCCCSSHHHHHHHHHHHS
T ss_pred             CCCCCCCcCCCCCCCeeCChHHHHHHHHHhC
Confidence            3444456899999999999999999987643

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.59  E-value=0.013  Score=35.35  Aligned_cols=30  Identities=20%  Similarity=0.375  Sum_probs=24.4

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|.+|+|.|.+...|..|+...+
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2emi_A            7 GTGERHYECSECGKAFIQKSTLSMHQRIHR   36 (46)
T ss_dssp             CSSCCCEECSSSCCEESSHHHHHHHHGGGC
T ss_pred             cCCCCCCCCCCCCcccCCHHHHHHHHhHhC
Confidence            334456899999999999999999987543

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.59  E-value=0.018  Score=34.81  Aligned_cols=29  Identities=21%  Similarity=0.408  Sum_probs=23.9

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yth_A            7 GSGEKPFQCEECGKRFTQNSHLHSHQRVH   35 (46)
T ss_dssp             CCCSSSBCCSSSCCCBSSHHHHHHHGGGG
T ss_pred             CCCCcCCCCCCCCcccCCHHHHHHHHHhc
Confidence            33445689999999999999999998653

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.58  E-value=0.012  Score=33.48  Aligned_cols=26  Identities=15%  Similarity=0.369  Sum_probs=22.4

Q ss_pred             CcccccccccccCCchhhHhhhhhhc
Q 028666           36 INEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        36 ~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      .-.+.|.+|+|.|.+...|..|+...
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elt_A            7 GKPYKCPQCSYASAIKANLNVHLRKH   32 (36)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHc
Confidence            34689999999999999999998643

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.58  E-value=0.011  Score=35.68  Aligned_cols=30  Identities=27%  Similarity=0.496  Sum_probs=24.5

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.++|..|+|.|.+...|..|+...+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eow_A            7 GTGEKPYKCNECGKAFRARSSLAIHQATHS   36 (46)
T ss_dssp             SCCCCCEECTTSCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCCeeccccCChhcCHHHHHHHHHHcC
Confidence            334456899999999999999999997543

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=94.56  E-value=0.016  Score=35.10  Aligned_cols=29  Identities=24%  Similarity=0.393  Sum_probs=24.0

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|.+|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emk_A            7 GTGEKPYECKECGKAFSQTTHLIQHQRVH   35 (46)
T ss_dssp             CSSSCSCBCSSSCCBCSCHHHHHHHHHHH
T ss_pred             cCCCCceECCCCCchhCCHHHHHHHHHHc
Confidence            33445689999999999999999999654

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.56  E-value=0.013  Score=35.28  Aligned_cols=29  Identities=24%  Similarity=0.422  Sum_probs=24.0

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yts_A            7 GTGEKPYICNECGKSFIQKSHLNRHRRIH   35 (46)
T ss_dssp             CCSCCSEECSSSCCEESSHHHHHHHGGGT
T ss_pred             CCCCcCEECCCCChhhCChHHHHHHHHhc
Confidence            44445689999999999999999998643

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.56  E-value=0.014  Score=35.29  Aligned_cols=29  Identities=21%  Similarity=0.393  Sum_probs=24.0

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|||.|.+...|..|+...
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2en1_A            7 GSGEKPFKCEECGKRFTQNSQLHSHQRVH   35 (46)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGG
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHHHc
Confidence            33445689999999999999999999653

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.55  E-value=0.012  Score=34.97  Aligned_cols=30  Identities=20%  Similarity=0.410  Sum_probs=24.6

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |.....+.|..|+|.|.+...|..|+...+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2eof_A            7 GTGEKPYECNECQKAFNTKSNLMVHQRTHT   36 (44)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHTT
T ss_pred             CCCCCCeECCCCCcccCCHhHHHHHHHHhC
Confidence            444456899999999999999999996543

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.55  E-value=0.016  Score=34.83  Aligned_cols=30  Identities=23%  Similarity=0.386  Sum_probs=24.6

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|.+|+|.|.+...|..|+...+
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   34 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQTH   34 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHHHT
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHhhC
Confidence            344456899999999999999999987543

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.53  E-value=0.011  Score=35.77  Aligned_cols=30  Identities=20%  Similarity=0.443  Sum_probs=24.8

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|.+|+|.|.+...|..|+...+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2en6_A            7 GSGEKPYGCNECGKTFSQKSILSAHQRTHT   36 (46)
T ss_dssp             CCSSCCEEETTTTEEESSHHHHHHHHHHHS
T ss_pred             cCCCcCeECCCCCcccCchHHHHHHHHHcC
Confidence            334456899999999999999999997643

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=94.52  E-value=0.016  Score=32.99  Aligned_cols=23  Identities=26%  Similarity=0.580  Sum_probs=20.6

Q ss_pred             cccccccccCCchhhHhhhhhhc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      +.|..|||.|.+...|..|+...
T Consensus         3 ~~C~~C~k~F~~~~~L~~H~~~H   25 (33)
T 1rim_A            3 FACPECPKRFMRSDHLSKHITLH   25 (33)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             ccCCCCCchhCCHHHHHHHHHHh
Confidence            57999999999999999998643

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.52  E-value=0.011  Score=35.34  Aligned_cols=30  Identities=20%  Similarity=0.500  Sum_probs=24.6

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|..|||.|.+...|..|+...+
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   34 (44)
T 2emx_A            5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHA   34 (44)
T ss_dssp             CSSCCCEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             cCCCcCccCCCCCcccCCHHHHHHHHHHhC
Confidence            444456899999999999999999987643

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.52  E-value=0.013  Score=35.27  Aligned_cols=30  Identities=20%  Similarity=0.396  Sum_probs=24.6

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|..|+|.|.+...|..|+...+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytf_A            7 GTGEKPFECSECQKAFNTKSNLIVHQRTHT   36 (46)
T ss_dssp             SCCCCSEECSSSCCEESSHHHHHHHHHTSC
T ss_pred             CCCCCCcCCCCCCcccCCHHHHHHHHHHhC
Confidence            444456899999999999999999986543

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=94.51  E-value=0.016  Score=40.04  Aligned_cols=51  Identities=22%  Similarity=0.445  Sum_probs=37.4

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      -+..|++......|.....++.|...|    .++|..|+|.|.+...|..|+...
T Consensus        44 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           44 KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH   98 (100)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred             CCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHHHHHHHh
Confidence            345676655556788888888877443    478888888888888888888654

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.51  E-value=0.015  Score=35.17  Aligned_cols=29  Identities=21%  Similarity=0.332  Sum_probs=24.2

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|.+|||.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytj_A            7 GTGEKPYICAECGKAFTIRSNLIKHQKIH   35 (46)
T ss_dssp             TSSCCSEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCCCcCeECCCCChhhCCHHHHHHHHHHc
Confidence            44445689999999999999999999653

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.51  E-value=0.02  Score=34.67  Aligned_cols=29  Identities=21%  Similarity=0.348  Sum_probs=24.1

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|+|.|.+...|..|+...
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2elz_A            7 GSVEKPYKCEDCGKGYNRRLNLDMHQRVH   35 (46)
T ss_dssp             CCCCSSCBCSSSCCBCSSHHHHHHHGGGG
T ss_pred             CCCCCCeeCcccCchhCCHHHHHHHHHhc
Confidence            34445689999999999999999998754

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=94.50  E-value=0.0088  Score=45.80  Aligned_cols=41  Identities=27%  Similarity=0.463  Sum_probs=23.5

Q ss_pred             cCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhccc
Q 028666           23 MFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        23 ~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      .|.....++.|...|    .+.|..|||.|.+...|..|+...|.
T Consensus        59 ~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~  103 (133)
T 2lt7_A           59 VFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHS  103 (133)
T ss_dssp             EESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHHHHHHTC
T ss_pred             ecccccchhhhccccCCCccccCCCCCCCcCCHHHHHHHhHHhcC
Confidence            555555555555433    25566666666666666666655554

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=94.50  E-value=0.013  Score=38.62  Aligned_cols=48  Identities=19%  Similarity=0.416  Sum_probs=34.7

Q ss_pred             CCCCCCCCCCccCCchHhhhhhhcCc----cccccc--ccccCCchhhHhhhhh
Q 028666           12 SSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGY--CKKSFRAEKFLDQHFD   59 (205)
Q Consensus        12 ~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~--C~K~F~sE~~LDlHid   59 (205)
                      +-.|+.+-....|.....++.|...|    .++|.+  |+|.|.+...|..|+.
T Consensus        17 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR   70 (72)
T ss_dssp             CEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred             ceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhh
Confidence            34576654556788888888877443    378865  8888888888888874

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.50  E-value=0.014  Score=35.18  Aligned_cols=29  Identities=21%  Similarity=0.361  Sum_probs=24.2

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |.....+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em7_A            7 GTGEKPYKCEECGKGFICRRDLYTHHMVH   35 (46)
T ss_dssp             SSCCCSEECSSSCCEESCHHHHHHHGGGG
T ss_pred             CCCCcCccCCCccchhCCHHHHHHHHHHh
Confidence            44445689999999999999999998654

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.50  E-value=0.012  Score=35.75  Aligned_cols=31  Identities=26%  Similarity=0.417  Sum_probs=25.3

Q ss_pred             hhhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           32 IHVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        32 ~h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      +|...-.+.|.+|+|.|.+...|..|+...+
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHT   36 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTHHH
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            3444556899999999999999999987643

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.50  E-value=0.013  Score=35.49  Aligned_cols=29  Identities=21%  Similarity=0.347  Sum_probs=24.2

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|.+|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2ytp_A            7 GTGERHYECSECGKAFARKSTLIMHQRIH   35 (46)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTT
T ss_pred             cCCCCCeECCcCCcccCCHHHHHHHHHHh
Confidence            44445689999999999999999998753

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.47  E-value=0.012  Score=35.62  Aligned_cols=30  Identities=23%  Similarity=0.361  Sum_probs=24.8

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|..|||.|.+...|..|+...+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2emy_A            7 GTGENPYECHECGKAFSRKYQLISHQRTHA   36 (46)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHHT
T ss_pred             CCCCcCcCCCCCCcccCcHHHHHHHHHHcC
Confidence            444456899999999999999999987643

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.46  E-value=0.013  Score=35.48  Aligned_cols=28  Identities=21%  Similarity=0.431  Sum_probs=23.5

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhh
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      |...-.+.|..|||.|.+...|..|+..
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em5_A            7 GSSTKSHQCHECGRGFTLKSHLNQHQRI   34 (46)
T ss_dssp             CCCSCSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCCCCeECCcCCCccCCHHHHHHHHHH
Confidence            3344568999999999999999999865

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=94.42  E-value=0.01  Score=31.61  Aligned_cols=23  Identities=26%  Similarity=0.543  Sum_probs=20.5

Q ss_pred             ccccccccccCCchhhHhhhhhh
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      .+.|.+|||.|.+...|..|+..
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRI   24 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHH
Confidence            36899999999999999999865

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.37  E-value=0.02  Score=34.62  Aligned_cols=30  Identities=23%  Similarity=0.411  Sum_probs=24.3

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |-..-.+.|.+|+|.|.+...|..|+...+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eoh_A            7 GSGKKPYECKECRKTFIQIGHLNQHKRVHT   36 (46)
T ss_dssp             CCCSCSCCCSSSCCCCSSHHHHHHHHHHCS
T ss_pred             cCCCCCcCCCCcCchhCCHHHHHHHHHHhC
Confidence            334456899999999999999999987543

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.37  E-value=0.03  Score=33.69  Aligned_cols=31  Identities=23%  Similarity=0.402  Sum_probs=25.1

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhccc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      |...-.+.|..|||.|.+...|..|+...|.
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~   37 (47)
T 2epx_A            7 GTGKKPYECIECGKAFIQNTSLIRHWRYYHT   37 (47)
T ss_dssp             CCCCCSBCCSSSCCCBSSHHHHHHHHTTTTT
T ss_pred             cCCCCCEECCccCchhCChHHHHHHhHhhcC
Confidence            3344568999999999999999999984554

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.36  E-value=0.015  Score=35.13  Aligned_cols=29  Identities=24%  Similarity=0.562  Sum_probs=24.2

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|||.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ene_A            7 GTGEKPYKCNECGKVFRHNSYLSRHQRIH   35 (46)
T ss_dssp             CCCSSSEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCeECCCCCchhCChHHHHHHHhhc
Confidence            34445689999999999999999998753

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.35  E-value=0.014  Score=35.13  Aligned_cols=29  Identities=31%  Similarity=0.440  Sum_probs=23.9

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|.+|+|.|.+...|..|+...
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (45)
T 2epu_A            7 GTGQKPFECTHCGKSFRAKGNLVTHQRIH   35 (45)
T ss_dssp             CCSCCSEEETTTTEEESSHHHHHHHHTTT
T ss_pred             CCCCcCccCCCCCCccCChHHHHHHHHHh
Confidence            33445689999999999999999998653

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.34  E-value=0.014  Score=35.31  Aligned_cols=30  Identities=20%  Similarity=0.478  Sum_probs=24.7

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |.....++|..|+|.|.+...|..|+...+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytk_A            7 GSGEKPYKCNECGKVFTQNSHLTNHWRIHT   36 (46)
T ss_dssp             SSSSCSEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             CCCCCCEeCCcCCCccCCHHHHHHHHHHHC
Confidence            444456899999999999999999997543

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.34  E-value=0.019  Score=34.45  Aligned_cols=29  Identities=24%  Similarity=0.337  Sum_probs=24.0

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |.....+.|..|+|.|.+...|..|+...
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2eou_A            7 GAAKTTSECQECGKIFRHSSLLIEHQALH   35 (44)
T ss_dssp             CSSSCCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHHH
Confidence            33445689999999999999999998653

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.33  E-value=0.01  Score=35.52  Aligned_cols=30  Identities=23%  Similarity=0.421  Sum_probs=24.6

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |.....+.|..|+|.|.+...|..|+...+
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~   36 (44)
T 2eox_A            7 GTDSKSYNCNECGKAFTRIFHLTRHQKIHT   36 (44)
T ss_dssp             CCCCCCEEETTTTEEESSSHHHHTTHHHHC
T ss_pred             CCCCCCeECcccCcccCCHHHHHHHHHHhC
Confidence            334456899999999999999999997543

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.33  E-value=0.016  Score=34.99  Aligned_cols=30  Identities=27%  Similarity=0.431  Sum_probs=24.9

Q ss_pred             hhhcCcccccccccccCCchhhHhhhhhhc
Q 028666           32 IHVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        32 ~h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      .|.....+.|..|+|.|.+...|..|+...
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ep0_A            6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIH   35 (46)
T ss_dssp             SSTTCCSEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCCeeCcccCcccCChHHHHHHHHHh
Confidence            344556689999999999999999998653

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.33  E-value=0.013  Score=35.33  Aligned_cols=30  Identities=27%  Similarity=0.506  Sum_probs=24.4

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |-..-.+.|.+|||.|.+...|..|+...+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytg_A            7 GTGEKPFKCGECGKSYNQRVHLTQHQRVHT   36 (46)
T ss_dssp             CSSCCSEECTTTCCEESSSHHHHTTGGGGS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcC
Confidence            334456899999999999999999986543

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.32  E-value=0.017  Score=33.00  Aligned_cols=26  Identities=27%  Similarity=0.598  Sum_probs=22.5

Q ss_pred             CcccccccccccCCchhhHhhhhhhc
Q 028666           36 INEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        36 ~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      ...+.|.+|+|.|.....|..|+...
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLRIH   32 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCEECCCCCceeCCHHHHHHHHHHh
Confidence            34678999999999999999998653

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.32  E-value=0.013  Score=35.52  Aligned_cols=30  Identities=23%  Similarity=0.489  Sum_probs=24.7

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|.+|+|.|.+...|..|+...+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eoz_A            7 GTGEKPYSCNVCGKAFVLSAHLNQHLRVHT   36 (46)
T ss_dssp             CSSCCSEEETTTTEEESSHHHHHHHHHHHS
T ss_pred             CCCCCCeECcccChhhCCHHHHHHHHHHhC
Confidence            334456899999999999999999987644

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.24  E-value=0.018  Score=34.79  Aligned_cols=29  Identities=24%  Similarity=0.432  Sum_probs=24.2

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.++|..|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2eq0_A            7 GTGEKPYKCHECGKVFRRNSHLARHQLIH   35 (46)
T ss_dssp             TTCCCCEECTTTCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCeECCCCCchhCCHHHHHHHHHHc
Confidence            44455689999999999999999998653

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.24  E-value=0.015  Score=35.09  Aligned_cols=30  Identities=20%  Similarity=0.409  Sum_probs=24.6

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|..|+|.|.+...|..|+...+
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ysp_A            7 GTGEKPYKCEKCGKGYNSKFNLDMHQKVHT   36 (46)
T ss_dssp             CSSCCSEEETTTTEEESCHHHHHHHHTTSC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHhhC
Confidence            344456899999999999999999987643

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=94.23  E-value=0.025  Score=32.98  Aligned_cols=26  Identities=27%  Similarity=0.806  Sum_probs=22.4

Q ss_pred             cccccccccccCCchhhHhhhhhhcc
Q 028666           37 NEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        37 h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      -.+.|..|||.|.+...|..|+....
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~~H~   30 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMNVHR   30 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CceECCCCCcccCCHHHHHHHHHHcC
Confidence            35789999999999999999987544

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.22  E-value=0.015  Score=34.96  Aligned_cols=29  Identities=21%  Similarity=0.274  Sum_probs=24.1

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|||.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2epw_A            7 GTGEKPCKCTECGKAFCWKSQLIMHQRTH   35 (46)
T ss_dssp             CCCCCSEECSSSCCEESSSHHHHHHHHHC
T ss_pred             CCCCCCeeCCCCCCccCCHHHHHHHHHHh
Confidence            33445689999999999999999999753

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.21  E-value=0.018  Score=34.43  Aligned_cols=29  Identities=24%  Similarity=0.476  Sum_probs=23.7

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |.....+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2emb_A            7 GHTRKRYECSKCQATFNLRKHLIQHQKTH   35 (44)
T ss_dssp             CCCCSSEECTTTCCEESCHHHHHHHGGGG
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHHc
Confidence            33344589999999999999999998643

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.21  E-value=0.012  Score=35.53  Aligned_cols=30  Identities=20%  Similarity=0.302  Sum_probs=24.6

Q ss_pred             hhhcCcccccccccccCCchhhHhhhhhhc
Q 028666           32 IHVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        32 ~h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      +|...-.++|..|||.|.+...|..|+...
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emh_A            6 SGTGERPYICTVCGKAFTDRSNLIKHQKIH   35 (46)
T ss_dssp             SCSCCCSEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHhc
Confidence            344445689999999999999999998653

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.20  E-value=0.018  Score=34.98  Aligned_cols=30  Identities=20%  Similarity=0.319  Sum_probs=24.4

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|..|+|.|.+...|..|+...+
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytm_A            7 GTGEKPYKCMECGKAFGDNSSCTQHQRLHT   36 (46)
T ss_dssp             CSSCCSSSBTTTTBCCSSHHHHHHHHHHHH
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHHcC
Confidence            334456899999999999999999997643

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.18  E-value=0.018  Score=32.85  Aligned_cols=27  Identities=19%  Similarity=0.532  Sum_probs=22.8

Q ss_pred             cCcccccccccccCCchhhHhhhhhhc
Q 028666           35 DINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        35 ~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      ..-.+.|.+|+|.|.+...|..|+...
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elq_A            6 SGKPFKCSLCEYATRSKSNLKAHMNRH   32 (36)
T ss_dssp             CCCSEECSSSSCEESCHHHHHHHHHHS
T ss_pred             CCCCccCCCCCchhCCHHHHHHHHHHh
Confidence            345689999999999999999998653

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.18  E-value=0.017  Score=34.81  Aligned_cols=29  Identities=24%  Similarity=0.437  Sum_probs=24.1

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ep2_A            7 GTGEKPYECSICGKSFTKKSQLHVHQQIH   35 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHHTT
T ss_pred             CCCCcCcCCCCCCcccCCHHHHHHHHHHh
Confidence            34445689999999999999999999753

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=94.18  E-value=0.018  Score=34.60  Aligned_cols=29  Identities=28%  Similarity=0.399  Sum_probs=24.2

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em9_A            7 GTGEKPYNCKECGKSFRWASCLLKHQRVH   35 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHGGGG
T ss_pred             CCCCcCeECCccccccCChHHHHHHHHHh
Confidence            44445689999999999999999998653

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.13  E-value=0.016  Score=34.86  Aligned_cols=29  Identities=28%  Similarity=0.353  Sum_probs=24.1

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2emm_A            7 GTGERPHKCNECGKSFIQSAHLIQHQRIH   35 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHHHH
T ss_pred             cCCCCCeeCCCCChhhCCHHHHHHHHHHh
Confidence            33445689999999999999999998754

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=94.12  E-value=0.015  Score=35.21  Aligned_cols=29  Identities=24%  Similarity=0.389  Sum_probs=24.2

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emj_A            7 GTGEKPFECAECGKSFSISSQLATHQRIH   35 (46)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHh
Confidence            44445689999999999999999998753

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=94.10  E-value=0.017  Score=35.65  Aligned_cols=22  Identities=23%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             cccccccccccCCchhhHhhhh
Q 028666           37 NEWRCGYCKKSFRAEKFLDQHF   58 (205)
Q Consensus        37 h~~rC~~C~K~F~sE~~LDlHi   58 (205)
                      --+.|.+|||+|.....|..|+
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHH
T ss_pred             cCeECCCCCCccCCHhHccCcC
Confidence            3578999999999999999998

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.09  E-value=0.014  Score=35.32  Aligned_cols=29  Identities=21%  Similarity=0.371  Sum_probs=24.2

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|||.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2emp_A            7 GTGVKPYMCNECGKAFSVYSSLTTHQVIH   35 (46)
T ss_dssp             SSCCCSEECSSSCCEESCHHHHHHHHHHH
T ss_pred             cCCCcCeECCCCCchhCCHHHHHHHHHHc
Confidence            44445689999999999999999998754

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=94.09  E-value=0.02  Score=34.67  Aligned_cols=30  Identities=27%  Similarity=0.481  Sum_probs=24.6

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |.....+.|..|+|.|.+...|..|+...+
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2el6_A            7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHT   36 (46)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcC
Confidence            444456899999999999999999986543

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.07  E-value=0.017  Score=34.50  Aligned_cols=30  Identities=23%  Similarity=0.534  Sum_probs=24.6

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|.+|+|.|.+...|..|+...+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2yu5_A            7 GAGENPFKCSKCDRVFTQRNYLVQHERTHA   36 (44)
T ss_dssp             CSCCCSEECSSSSCEESSSHHHHHHHHHCC
T ss_pred             cCCCCCeECCCCCchhCCHHHHHHHhHhcC
Confidence            334456899999999999999999987643

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.06  E-value=0.013  Score=34.66  Aligned_cols=29  Identities=17%  Similarity=0.293  Sum_probs=23.7

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|.+|+|.|.+...|..|+...
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   34 (42)
T 2en2_A            6 SGGEKPYKCETCGARFVQVAHLRAHVLIH   34 (42)
T ss_dssp             CCSSCSEECTTTCCEESSHHHHHHHTHHH
T ss_pred             cCCCCCEeCCCcChhhCCHHHHHHHHHHc
Confidence            33445689999999999999999998643

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=94.05  E-value=0.019  Score=35.81  Aligned_cols=29  Identities=21%  Similarity=0.503  Sum_probs=24.5

Q ss_pred             CcccccccccccCCchhhHhhhhhhcccc
Q 028666           36 INEWRCGYCKKSFRAEKFLDQHFDNRHNN   64 (205)
Q Consensus        36 ~h~~rC~~C~K~F~sE~~LDlHidnrH~~   64 (205)
                      .-.+.|..|||.|.....|..|+...|..
T Consensus         5 ~kp~~C~~C~k~F~~~~~L~~H~~~~H~~   33 (48)
T 3iuf_A            5 DKPYACDICGKRYKNRPGLSYHYAHSHLA   33 (48)
T ss_dssp             TSCEECTTTCCEESSHHHHHHHHHHSSCC
T ss_pred             CcCEECCCcCcccCCHHHHHHHhhhhcCC
Confidence            34578999999999999999999856654

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.03  E-value=0.02  Score=34.39  Aligned_cols=30  Identities=20%  Similarity=0.321  Sum_probs=24.3

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|.+|+|.|.+...|..|+...+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (44)
T 2epv_A            7 GSGEKPYECNECGKAFIWKSLLIVHERTHA   36 (44)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHGGGS
T ss_pred             cCCCcCeECCCCCcccCchHHHHHHHhHhc
Confidence            334456899999999999999999987543

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.02  E-value=0.018  Score=34.61  Aligned_cols=29  Identities=21%  Similarity=0.225  Sum_probs=23.8

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |.....+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2en8_A            7 GSGEKSHTCDECGKNFCYISALRIHQRVH   35 (46)
T ss_dssp             CCCCSSEECTTTCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCeECCCcCcccCCHHHHHHHHHHh
Confidence            33445589999999999999999998643

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.98  E-value=0.014  Score=35.33  Aligned_cols=29  Identities=21%  Similarity=0.446  Sum_probs=24.0

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|||.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2eoo_A            7 GSGERPYGCNECGKNFGRHSHLIEHLKRH   35 (46)
T ss_dssp             CSCCCCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCEEccccCcccCCHHHHHHHHHHH
Confidence            33444589999999999999999998764

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.97  E-value=0.023  Score=34.38  Aligned_cols=30  Identities=20%  Similarity=0.422  Sum_probs=24.4

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|.+|+|.|.+...|..|+...+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2emz_A            7 GSGERPFKCNECGKGFGRRSHLAGHLRLHS   36 (46)
T ss_dssp             SSCCCSCCCSSSCCCCSSHHHHHHHHHHHH
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhC
Confidence            334456899999999999999999987543

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.95  E-value=0.017  Score=34.94  Aligned_cols=30  Identities=20%  Similarity=0.414  Sum_probs=24.5

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|..|+|.|.+...|..|+....
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2yto_A            7 GTGEKPYKCSDCGKAFTRKSGLHIHQQSHT   36 (46)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHT
T ss_pred             cCCCCCEECcccCCccCCHhHHHHHHHHcC
Confidence            334456899999999999999999987643

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.94  E-value=0.018  Score=34.76  Aligned_cols=29  Identities=17%  Similarity=0.121  Sum_probs=24.1

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |.....+.|..|||.|.+...|..|+...
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yso_A            7 GSREKSHQCRECGEIFFQYVSLIEHQVLH   35 (46)
T ss_dssp             SSCCCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cCCCCCEEccccChhhCCHHHHHHHHHHh
Confidence            44445689999999999999999998654

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.92  E-value=0.016  Score=34.94  Aligned_cols=29  Identities=21%  Similarity=0.402  Sum_probs=24.2

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |.....+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eor_A            7 GTGEKPYNCEECGKAFIHDSQLQEHQRIH   35 (46)
T ss_dssp             SSCCCSEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cCCCcCccCCCCCCCcCCHHHHHHHHHhc
Confidence            44445689999999999999999998754

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.90  E-value=0.018  Score=34.73  Aligned_cols=30  Identities=20%  Similarity=0.460  Sum_probs=24.4

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |.....+.|..|+|.|.+...|..|+...+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytd_A            7 GSGEKPYKCSECGKAFHRHTHLNEHRRIHT   36 (46)
T ss_dssp             SCCCCSEECSSSCCEESSHHHHHHHHHHHT
T ss_pred             cCCCcCeECCCCCCeeCChHHHHHHHHHcC
Confidence            334456899999999999999999986543

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.83  E-value=0.019  Score=34.74  Aligned_cols=30  Identities=23%  Similarity=0.482  Sum_probs=24.6

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.+.|.+|+|.|.+...|..|+...+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2em2_A            7 GSGEKPFKCKECGKAFRQNIHLASHLRIHT   36 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCCEECCcCCchhCCHHHHHHHHHHhC
Confidence            334456899999999999999999987543

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.81  E-value=0.024  Score=38.00  Aligned_cols=33  Identities=33%  Similarity=0.745  Sum_probs=27.7

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhccccc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRHNNL   65 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH~~l   65 (205)
                      |.....+.|..|+|.|.+...|..|+...|..-
T Consensus        10 H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~   42 (86)
T 1x6h_A           10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   42 (86)
T ss_dssp             CCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             ecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCc
Confidence            444456899999999999999999999888653

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.71  E-value=0.018  Score=33.04  Aligned_cols=27  Identities=22%  Similarity=0.382  Sum_probs=22.7

Q ss_pred             hcCcccccccccccCCch-hhHhhhhhh
Q 028666           34 VDINEWRCGYCKKSFRAE-KFLDQHFDN   60 (205)
Q Consensus        34 ~~~h~~rC~~C~K~F~sE-~~LDlHidn   60 (205)
                      .....+.|.+|+|.|.+. ..|..|+..
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~~L~~H~~~   32 (37)
T 2elp_A            5 SSGRAMKCPYCDFYFMKNGSDLQRHIWA   32 (37)
T ss_dssp             CCCCCEECSSSSCEECSSCHHHHHHHHH
T ss_pred             CCCCCeECCCCChhhccCHHHHHHHHHh
Confidence            334568999999999999 999999864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.71  E-value=0.021  Score=34.56  Aligned_cols=30  Identities=20%  Similarity=0.323  Sum_probs=24.5

Q ss_pred             hhhcCcccccccccccCCchhhHhhhhhhc
Q 028666           32 IHVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        32 ~h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      +|...-.+.|..|+|.|.+...|..|+...
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em4_A            6 SGTGQRPYECIECGKAFKTKSSLICHRRSH   35 (46)
T ss_dssp             CCCCSSSEECSSSCCEESSHHHHHHHHHHH
T ss_pred             ccCCCcCcCCCCCCCccCCHHHHHHHHHhc
Confidence            344445689999999999999999998754

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=93.69  E-value=0.025  Score=34.04  Aligned_cols=30  Identities=13%  Similarity=0.381  Sum_probs=24.8

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |...-.++|..|+|.|.....|..|+...+
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   34 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD   34 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHHcc
Confidence            444456899999999999999999997644

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.68  E-value=0.023  Score=34.22  Aligned_cols=29  Identities=17%  Similarity=0.327  Sum_probs=23.9

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2enc_A            7 GSGEKPFKCEECGKGFYTNSQCYSHQRSH   35 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCCCCCcCCCCCCCcCCChHHHHHHHHHh
Confidence            33445689999999999999999998653

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.64  E-value=0.025  Score=32.24  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=21.9

Q ss_pred             CcccccccccccCCchhhHhhhhhh
Q 028666           36 INEWRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        36 ~h~~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      .-.+.|..|+|.|.....|..|+..
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            7 GLLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHH
Confidence            3457899999999999999999864

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=93.63  E-value=0.025  Score=35.31  Aligned_cols=26  Identities=31%  Similarity=0.761  Sum_probs=22.3

Q ss_pred             ccccccccccCCchhhHhhhhhhccc
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      .++|..|+|.|.+...|..|+...+.
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~h~~   29 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRTHTG   29 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHHHHC
T ss_pred             CccCCCCcchhCChHHHHHHHHHcCC
Confidence            57899999999999999999986443

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=93.62  E-value=0.038  Score=30.36  Aligned_cols=23  Identities=30%  Similarity=0.673  Sum_probs=20.1

Q ss_pred             cccc--cccccCCchhhHhhhhhhc
Q 028666           39 WRCG--YCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        39 ~rC~--~C~K~F~sE~~LDlHidnr   61 (205)
                      +.|.  .|||.|.+...|..|+...
T Consensus         3 ~~C~~~~C~k~f~~~~~L~~H~~~H   27 (31)
T 1sp2_A            3 FMCTWSYCGKRFTRSDELQRHKRTH   27 (31)
T ss_dssp             CBCCSTTCCCBCSSHHHHHHHHTTT
T ss_pred             cCCcCCCCCcccCCHhHHHHHHHHh
Confidence            5787  9999999999999998653

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.61  E-value=0.017  Score=34.91  Aligned_cols=29  Identities=21%  Similarity=0.444  Sum_probs=24.0

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|..|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yu8_A            7 GTGEKPYKCNECGKVFTQNSHLARHRRVH   35 (46)
T ss_dssp             CCCCSSEECSSSCCEESSSHHHHHHTHHH
T ss_pred             CCCCCCeECCcCCchhCCHHHHHHHHHhc
Confidence            44445689999999999999999998653

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=93.58  E-value=0.0051  Score=42.33  Aligned_cols=51  Identities=14%  Similarity=0.192  Sum_probs=42.2

Q ss_pred             CCCCCCCCCCccCCchHhhhhhhcCc---ccccccccccCCchhhHhhhhhhcccc
Q 028666           12 SSKCRLHPDNDMFRDQEQHKIHVDIN---EWRCGYCKKSFRAEKFLDQHFDNRHNN   64 (205)
Q Consensus        12 ~~~C~L~P~~D~F~~~E~~k~h~~~h---~~rC~~C~K~F~sE~~LDlHidnrH~~   64 (205)
                      +-.|+.-  .-.|.....+..|...|   .+.|..|++.|.+...|..|+...|+.
T Consensus        31 ~~~C~~C--~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~L~~H~~~~h~~   84 (88)
T 1llm_C           31 PFACDIC--GRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARLKKL   84 (88)
T ss_dssp             CEECTTT--CCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCCC--CCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4567653  35899999999998443   378999999999999999999999874

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.58  E-value=0.018  Score=34.82  Aligned_cols=29  Identities=21%  Similarity=0.349  Sum_probs=24.4

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |.....+.|..|+|.|.+...|..|+...
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em8_A            7 GSGEKPYKCVECGKGYKRRLDLDFHQRVH   35 (46)
T ss_dssp             CCSCCSEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCeECcccCchhCCHHHHHHHHHHH
Confidence            44455689999999999999999999753

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.50  E-value=0.021  Score=34.46  Aligned_cols=29  Identities=17%  Similarity=0.312  Sum_probs=23.8

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |...-.+.|.+|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2en3_A            7 GTGEKPFQCKECGMNFSWSCSLFKHLRSH   35 (46)
T ss_dssp             SCCCCSEECSSSCCEESSSHHHHHHHHHH
T ss_pred             cCCCCCeeCcccChhhCCHHHHHHHHHHh
Confidence            33445589999999999999999998653

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=93.46  E-value=0.023  Score=44.09  Aligned_cols=50  Identities=22%  Similarity=0.411  Sum_probs=37.1

Q ss_pred             CCCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhccc
Q 028666           12 SSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        12 ~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      +..|+.-  ...|.....++.|...|    .+.|..|+|.|.+...|..|+...+.
T Consensus       105 ~~~C~~C--~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  158 (190)
T 2i13_A          105 PYACPEC--GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG  158 (190)
T ss_dssp             CEECTTT--CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CCcCCCC--CCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            4456643  35788888888887443    47899999999999999999876543

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.40  E-value=0.026  Score=34.11  Aligned_cols=28  Identities=29%  Similarity=0.568  Sum_probs=23.4

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhh
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      |...-.+.|..|+|.|.+...|..|+..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoy_A            7 GQKEKCFKCNKCEKTFSCSKYLTQHERI   34 (46)
T ss_dssp             CCCSCCEECSSSCCEESSSHHHHHHHTT
T ss_pred             cCCCCCEECcCCCCcCCCHHHHHHHHHH
Confidence            3344568999999999999999999854

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=93.34  E-value=0.04  Score=34.35  Aligned_cols=25  Identities=16%  Similarity=0.498  Sum_probs=22.0

Q ss_pred             cccccccccCCchhhHhhhhhhccc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      +.|..|+|.|.+...|..|+...+.
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~   26 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRTHTD   26 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSS
T ss_pred             CcCCCCcCcCCCHHHHHHHHHhcCC
Confidence            6899999999999999999976443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=93.29  E-value=0.039  Score=34.83  Aligned_cols=25  Identities=20%  Similarity=0.712  Sum_probs=22.1

Q ss_pred             ccccccccccCCchhhHhhhhhhcc
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      .+.|..|+|.|.+...|..|+...+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~   26 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHT   26 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTT
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhC
Confidence            3689999999999999999997643

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=93.26  E-value=0.019  Score=37.00  Aligned_cols=31  Identities=16%  Similarity=0.459  Sum_probs=26.5

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhccc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      |...-.++|..|+|.|.+...|..|+...|.
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~   35 (66)
T 2drp_A            5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHK   35 (66)
T ss_dssp             EEETTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             cCCCcceECCCCcchhCCHHHHHHHHHHHcC
Confidence            3445668999999999999999999998773

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.24  E-value=0.026  Score=37.70  Aligned_cols=32  Identities=19%  Similarity=0.471  Sum_probs=26.6

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcccc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRHNN   64 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH~~   64 (205)
                      |...-.+.|..|+|.|.+...|..|+...|..
T Consensus        10 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~   41 (77)
T 2ct1_A           10 HSGEKPYECYICHARFTQSGTMKMHILQKHTE   41 (77)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             cCCCCCeECCCcCchhCCHHHHHHHHHHhcCC
Confidence            33445589999999999999999999877754

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=93.09  E-value=0.037  Score=33.89  Aligned_cols=28  Identities=25%  Similarity=0.402  Sum_probs=23.5

Q ss_pred             cCcccccccccccCCchhhHhhhhhhcc
Q 028666           35 DINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        35 ~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      ....+.|.+|+|.|.+...|..|+...+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (48)
T 2epr_A            9 TRKQVACEICGKIFRDVYHLNRHKLSHS   36 (48)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGGGSC
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHhcC
Confidence            3456899999999999999999987543

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=93.04  E-value=0.038  Score=29.38  Aligned_cols=22  Identities=27%  Similarity=0.622  Sum_probs=19.9

Q ss_pred             cccc--cccccCCchhhHhhhhhh
Q 028666           39 WRCG--YCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        39 ~rC~--~C~K~F~sE~~LDlHidn   60 (205)
                      +.|.  .|||.|.+...|..|+..
T Consensus         3 ~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            3 YVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             EEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCcCCcCcCccCCHHHHHHHHHH
Confidence            5799  999999999999999864

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=93.02  E-value=0.01  Score=33.56  Aligned_cols=22  Identities=27%  Similarity=0.632  Sum_probs=20.0

Q ss_pred             cccccccccCCchhhHhhhhhh
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      +.|.+|||.|.+...|..|+..
T Consensus         3 ~~C~~C~k~f~~~~~L~~H~~~   24 (32)
T 2kfq_A            3 FACPACPKRFMRSDALSKHIKT   24 (32)
T ss_dssp             SSSSSSCTTHHHHHTTSSSTTS
T ss_pred             CCCCCCCcccCCHHHHHHHHHH
Confidence            6899999999999999999854

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=92.99  E-value=0.054  Score=29.83  Aligned_cols=24  Identities=25%  Similarity=0.488  Sum_probs=20.8

Q ss_pred             ccccc--cccccCCchhhHhhhhhhc
Q 028666           38 EWRCG--YCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        38 ~~rC~--~C~K~F~sE~~LDlHidnr   61 (205)
                      .+.|.  .|||.|.+...|..|+...
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~H   28 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKSH   28 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGG
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHHc
Confidence            36798  8999999999999998653

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=92.98  E-value=0.04  Score=36.37  Aligned_cols=31  Identities=29%  Similarity=0.458  Sum_probs=26.1

Q ss_pred             hhhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           32 IHVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        32 ~h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      +|...-.++|..|+|.|.+...|..|+...+
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   38 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT   38 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             ccCCCCCccCCCCCCccCCHHHHHHHHHhcC
Confidence            4555567899999999999999999997644

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=92.84  E-value=0.027  Score=42.99  Aligned_cols=46  Identities=20%  Similarity=0.455  Sum_probs=37.2

Q ss_pred             CCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhh
Q 028666           13 SKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        13 ~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      -.|+.-  .-.|.....++.|...|    .+.|.+|+|.|.+...|..|+..
T Consensus        23 y~C~~C--~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   72 (133)
T 2lt7_A           23 YICIVC--KRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH   72 (133)
T ss_dssp             EEETTT--CCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHH
T ss_pred             eECCCC--CCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccc
Confidence            457654  35799999999998665    47899999999999999999854

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=92.59  E-value=0.045  Score=40.56  Aligned_cols=51  Identities=20%  Similarity=0.236  Sum_probs=39.7

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhc-Cc-------ccccccccccCCchhhHhhhhhhccc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVD-IN-------EWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~-~h-------~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      -|-.|+.-  .-.|.....++.|.. .|       .+.|..|||.|.+...|..|+...|.
T Consensus        17 kpy~C~~C--gk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Ht   75 (102)
T 2ghf_A           17 GGYECKYC--TFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP   75 (102)
T ss_dssp             SSEECSSC--SCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTST
T ss_pred             cCcCCCCC--CCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcC
Confidence            34567653  357999999999984 45       37899999999999999999655664

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=92.19  E-value=0.057  Score=41.79  Aligned_cols=50  Identities=22%  Similarity=0.401  Sum_probs=32.6

Q ss_pred             CCCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCCchhhHhhhhhhccc
Q 028666           12 SSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        12 ~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      +..|+.-  ...|.....++.|...|    .++|..|+|.|.+...|..|+...|.
T Consensus        21 ~~~C~~C--~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   74 (190)
T 2i13_A           21 PYACPEC--GKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG   74 (190)
T ss_dssp             ------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHC
T ss_pred             CCcCCCC--ccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCC
Confidence            3456543  35788888888888554    47899999999999999999876554

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.17  E-value=0.051  Score=38.65  Aligned_cols=23  Identities=22%  Similarity=0.575  Sum_probs=16.2

Q ss_pred             ccccccccccCCchhhHhhhhhh
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      .+.|..|+|.|.+...|..|+..
T Consensus        19 ~~~C~~C~k~f~~~~~L~~H~~~   41 (115)
T 2dmi_A           19 KFRCKDCSAAYDTLVELTVHMNE   41 (115)
T ss_dssp             SEEBSSSSCEESSHHHHHHHHHH
T ss_pred             CEECCccCchhcCHHHHHHHHHH
Confidence            46777777777777777777764

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=91.86  E-value=0.062  Score=35.16  Aligned_cols=26  Identities=19%  Similarity=0.201  Sum_probs=23.0

Q ss_pred             CcccccccccccCCchhhHhhhhhhc
Q 028666           36 INEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        36 ~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      ...++|..|+|.|.+...|..|+...
T Consensus         7 ~~~~~C~~C~k~f~~~~~L~~H~~~H   32 (70)
T 1x5w_A            7 GHPEKCSECSYSCSSKAALRIHERIH   32 (70)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHc
Confidence            45689999999999999999999763

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=91.72  E-value=0.099  Score=32.88  Aligned_cols=29  Identities=24%  Similarity=0.518  Sum_probs=23.4

Q ss_pred             CcccccccccccCCchhhHhhhhhhcccc
Q 028666           36 INEWRCGYCKKSFRAEKFLDQHFDNRHNN   64 (205)
Q Consensus        36 ~h~~rC~~C~K~F~sE~~LDlHidnrH~~   64 (205)
                      .-.+.|.+|+|.|.+...|..|+...|..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   38 (54)
T 2eps_A           10 GKPYICQSCGKGFSRPDHLNGHIKQVHTS   38 (54)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            34578999999999999999998766643

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=91.61  E-value=0.075  Score=35.10  Aligned_cols=28  Identities=25%  Similarity=0.472  Sum_probs=24.0

Q ss_pred             cCcccccccccccCCchhhHhhhhhhcc
Q 028666           35 DINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        35 ~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      ....++|..|+|.|.+...|..|+...+
T Consensus        14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~   41 (74)
T 2lce_A           14 SDKPYKCDRCQASFRYKGNLASHKTVHT   41 (74)
T ss_dssp             CCCSBCCTTSSCCBSCHHHHHHHHHHHC
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHHHcC
Confidence            3456899999999999999999997644

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=91.20  E-value=0.1  Score=36.04  Aligned_cols=27  Identities=30%  Similarity=0.455  Sum_probs=23.5

Q ss_pred             cccccccccccCCchhhHhhhhhhccc
Q 028666           37 NEWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        37 h~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      -.+.|.+|+|.|.....|..|+.....
T Consensus        12 kpy~C~~CgK~F~~~s~L~~H~r~Htg   38 (66)
T 2epp_A           12 GILPCGLCGKVFTDANRLRQHEAQHGV   38 (66)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             cCcCCCCCCCccCCHHHHHhhhhhhCC
Confidence            347899999999999999999987555

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.19  E-value=0.086  Score=37.20  Aligned_cols=32  Identities=19%  Similarity=0.196  Sum_probs=26.4

Q ss_pred             hhhcCcccccccccccCC-chhhHhhhhhhccc
Q 028666           32 IHVDINEWRCGYCKKSFR-AEKFLDQHFDNRHN   63 (205)
Q Consensus        32 ~h~~~h~~rC~~C~K~F~-sE~~LDlHidnrH~   63 (205)
                      +|.....+.|..|+|.|. +...|..|+...|.
T Consensus        18 ~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~   50 (98)
T 2gqj_A           18 AIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQK   50 (98)
T ss_dssp             TTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHH
T ss_pred             HhccCCCcCCCCCCCChhhhHHHHHHHHHHHcC
Confidence            344556789999999999 99999999976554

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.08  E-value=0.055  Score=36.04  Aligned_cols=29  Identities=17%  Similarity=0.319  Sum_probs=24.6

Q ss_pred             cCcccccccccccCCchhhHhhhhhhccc
Q 028666           35 DINEWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        35 ~~h~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      ..-.++|..|+|.|.+...|..|+...+.
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   32 (78)
T 2d9h_A            4 GSSGLQCEICGFTCRQKASLNWHQRKHAE   32 (78)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             CCcCeECCCCCCeeCCHHHHHHHHHHhhc
Confidence            34568999999999999999999976554

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=91.02  E-value=0.11  Score=34.61  Aligned_cols=27  Identities=26%  Similarity=0.506  Sum_probs=23.5

Q ss_pred             CcccccccccccCCchhhHhhhhhhcc
Q 028666           36 INEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        36 ~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      ...++|..|+|.|.+...|..|+...+
T Consensus        16 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   42 (77)
T 2cot_A           16 RRRYKCDECGKSFSHSSDLSKHRRTHT   42 (77)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             CCCEECCCCCcccCCHHHHHHHHHHcC
Confidence            456899999999999999999997543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=90.86  E-value=0.077  Score=35.07  Aligned_cols=39  Identities=18%  Similarity=0.301  Sum_probs=30.8

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhcCc----ccccccccccCC
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVDIN----EWRCGYCKKSFR   49 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~~h----~~rC~~C~K~F~   49 (205)
                      -+..|+.+-..-.|.....++.|...|    .+.|.+|||.|.
T Consensus        37 ~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             CCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            456788755566899999999998554    489999999994

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=90.39  E-value=0.078  Score=35.63  Aligned_cols=24  Identities=29%  Similarity=0.668  Sum_probs=21.2

Q ss_pred             cccccccccCCchhhHhhhhhhccc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      +.|.+|||.|.+...|..|+.. |.
T Consensus         5 y~C~~C~k~F~~~~~L~~H~~~-Ht   28 (60)
T 4gzn_C            5 FFCNFCGKTYRDASGLSRHRRA-HL   28 (60)
T ss_dssp             EECTTTCCEESSHHHHHHHHHH-HH
T ss_pred             ccCCCCCCEeCCHHHHHHHHHH-hC
Confidence            6899999999999999999854 53

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=90.05  E-value=0.1  Score=37.38  Aligned_cols=29  Identities=21%  Similarity=0.384  Sum_probs=24.4

Q ss_pred             cCcccccccccccCCchhhHhhhhhhccc
Q 028666           35 DINEWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        35 ~~h~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      ..-...|.+|||.|.+...|..|+...|.
T Consensus        25 ~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~   53 (85)
T 2lv2_A           25 SAECHLCPVCGESFASKGAQERHLRLLHA   53 (85)
T ss_dssp             CCTTEECTTSCCEESSHHHHHHHHHTTSC
T ss_pred             CCCCEECCCCCCCcCcHHHHhhhhhhccC
Confidence            34457899999999999999999987654

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.88  E-value=0.13  Score=33.47  Aligned_cols=42  Identities=19%  Similarity=0.163  Sum_probs=33.1

Q ss_pred             ccCCchHhhhhhhcC---cccccc-cccccCCchhhHhhhhhhccccc
Q 028666           22 DMFRDQEQHKIHVDI---NEWRCG-YCKKSFRAEKFLDQHFDNRHNNL   65 (205)
Q Consensus        22 D~F~~~E~~k~h~~~---h~~rC~-~C~K~F~sE~~LDlHidnrH~~l   65 (205)
                      ..|. ...++.|...   ..+.|. .|||.|.....|..|+.. |-+.
T Consensus        18 k~f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~~L~~H~~~-hc~~   63 (66)
T 2eod_A           18 KEFV-FDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKD-SCNT   63 (66)
T ss_dssp             CEEE-HHHHHHHHHHCSSSEEECTTCCSCCEEETTTHHHHHHT-TSSS
T ss_pred             CccC-HHHHHHHHHHcCCcCccCCcccCcccccHHHHHHHHHh-hccc
Confidence            4788 8888888732   347899 999999999999999854 5443

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=89.79  E-value=0.099  Score=30.14  Aligned_cols=25  Identities=20%  Similarity=0.406  Sum_probs=21.1

Q ss_pred             Cccccccc--ccccCCchhhHhhhhhh
Q 028666           36 INEWRCGY--CKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        36 ~h~~rC~~--C~K~F~sE~~LDlHidn   60 (205)
                      .-.+.|.+  |||.|.+...|..|+..
T Consensus         6 ~k~~~C~~~~C~k~f~~~~~L~~H~~~   32 (37)
T 1va1_A            6 KKQHICHIQGCGKVYGKTSHLRAHLRW   32 (37)
T ss_dssp             CCCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            34578985  99999999999999864

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.87  E-value=0.13  Score=31.72  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=20.3

Q ss_pred             cccccc--ccccCCchhhHhhhhhh
Q 028666           38 EWRCGY--CKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        38 ~~rC~~--C~K~F~sE~~LDlHidn   60 (205)
                      .++|.+  |+|.|.+...|..|+..
T Consensus         9 p~~C~~~~C~k~F~~~~~L~~H~r~   33 (38)
T 2eln_A            9 LLKCPTDGCDYSTPDKYKLQAHLKV   33 (38)
T ss_dssp             CEECSSSSCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCccCCHHHHHHHHHh
Confidence            478986  99999999999999854

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.62  E-value=0.17  Score=30.34  Aligned_cols=29  Identities=17%  Similarity=0.294  Sum_probs=23.5

Q ss_pred             hhcCcccccc--cccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCG--YCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~--~C~K~F~sE~~LDlHidnr   61 (205)
                      |.....++|.  .|+|.|.+...|..|+...
T Consensus         7 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H   37 (48)
T 2ent_A            7 GTGEKPFACTWPGCGWRFSRSDELSRHRRSH   37 (48)
T ss_dssp             SCCCCCEECCSSSCCCEESSHHHHHHHHTTS
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHh
Confidence            3344568898  8999999999999998653

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=88.20  E-value=0.25  Score=30.92  Aligned_cols=38  Identities=11%  Similarity=0.229  Sum_probs=28.8

Q ss_pred             CCCCCCCCCCCccCCchHhhhhhhc-Ccc----cccccccccCCc
Q 028666           11 ISSKCRLHPDNDMFRDQEQHKIHVD-INE----WRCGYCKKSFRA   50 (205)
Q Consensus        11 l~~~C~L~P~~D~F~~~E~~k~h~~-~h~----~rC~~C~K~F~s   50 (205)
                      -+..|+.-  ...|.....++.|.. .|.    ++|..|+|.|.+
T Consensus        11 k~~~C~~C--~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A           11 KPYICQSC--GKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCEECSSS--CCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCeECCCC--CcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            34567653  357999999998874 654    799999999976

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=88.19  E-value=0.21  Score=31.50  Aligned_cols=26  Identities=31%  Similarity=0.676  Sum_probs=24.3

Q ss_pred             ccccccccCCchhhHhhhhhhccccc
Q 028666           40 RCGYCKKSFRAEKFLDQHFDNRHNNL   65 (205)
Q Consensus        40 rC~~C~K~F~sE~~LDlHidnrH~~l   65 (205)
                      .|.+|+|.+..-+-|-.||.+-|++.
T Consensus        11 hcrfckkkysdvknlikhire~hd~~   36 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRDAHDPQ   36 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            59999999999999999999999974

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=88.02  E-value=0.18  Score=28.78  Aligned_cols=25  Identities=24%  Similarity=0.494  Sum_probs=21.2

Q ss_pred             cccccc--cccccCCchhhHhhhhhhc
Q 028666           37 NEWRCG--YCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        37 h~~rC~--~C~K~F~sE~~LDlHidnr   61 (205)
                      -.+.|.  .|+|.|.+...|..|+...
T Consensus         5 k~~~C~~~~C~k~f~~~~~L~~H~~~H   31 (38)
T 1bhi_A            5 KPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             cceECCCCCCCcccCCHHHHHHHHHHh
Confidence            357899  5999999999999998643

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=87.66  E-value=0.18  Score=31.52  Aligned_cols=26  Identities=27%  Similarity=0.565  Sum_probs=24.6

Q ss_pred             cccccccccCCchhhHhhhhhhcccc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNRHNN   64 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnrH~~   64 (205)
                      +.|..|.|.|.+..-|-.|+++-|.+
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            68999999999999999999999975

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=85.48  E-value=0.26  Score=35.65  Aligned_cols=27  Identities=26%  Similarity=0.519  Sum_probs=23.4

Q ss_pred             cCcccccccccccCCchhhHhhhhhhcc
Q 028666           35 DINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        35 ~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      ..-.+.|..|||.|.+...|..|+.. |
T Consensus        71 ~~~~~~C~~C~k~f~~~~~l~~H~~~-H   97 (129)
T 2wbt_A           71 AISQFVCPLCLMPFSSSVSLKQHIRY-T   97 (129)
T ss_dssp             HHCSEECTTTCCEESSHHHHHHHHHH-T
T ss_pred             CCCCeECCCCCcccCCHhHHHHHHHH-C
Confidence            44568999999999999999999965 5

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.15  E-value=0.099  Score=33.67  Aligned_cols=46  Identities=22%  Similarity=0.252  Sum_probs=31.5

Q ss_pred             CCCCCCCCCCccCCchHhhhhhhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           12 SSKCRLHPDNDMFRDQEQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        12 ~~~C~L~P~~D~F~~~E~~k~h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      +..|+.-.  ..|.....++.   ...+.|..|||.|.+...|..|+...+
T Consensus        18 ~~~C~~C~--k~f~~~~~l~~---~~~~~C~~C~~~f~~~~~l~~H~~~H~   63 (73)
T 2ctu_A           18 SQKCSKCG--IIFIRRSTLSR---RKTPMCEKCRKDSCQEAALNKDEGNES   63 (73)
T ss_dssp             EEECSSSC--CEEECCCCCCC---SSSCCCHHHHHTCSCCCSSCCCSSCCC
T ss_pred             CeeCCccc--chhCCHHHhCc---CCCCCCCCCChhhcCHHHHHHHHHhhc
Confidence            34555432  34554444444   456899999999999999999987644

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=85.10  E-value=0.22  Score=30.42  Aligned_cols=31  Identities=16%  Similarity=0.335  Sum_probs=24.6

Q ss_pred             hhhhhcCcccccc--cccccCCchhhHhhhhhh
Q 028666           30 HKIHVDINEWRCG--YCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        30 ~k~h~~~h~~rC~--~C~K~F~sE~~LDlHidn   60 (205)
                      +..|...-.+.|.  .|||.|.....|..|+..
T Consensus        10 ~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~   42 (47)
T 1ncs_A           10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             HhccCCCCCeECCCCCCCCccCCHHHHHHHHHH
Confidence            3345555668996  699999999999999865

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.81  E-value=0.69  Score=31.35  Aligned_cols=27  Identities=19%  Similarity=0.190  Sum_probs=23.6

Q ss_pred             cccccccccCCchhhHhhhhhhccccc
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDNRHNNL   65 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidnrH~~l   65 (205)
                      ..|..|+|.|.+...|..|+...|...
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~   52 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGG   52 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCC
T ss_pred             CcccccccccCCHHHHHHHHHHhccCC
Confidence            369999999999999999998877653

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=84.28  E-value=0.44  Score=34.02  Aligned_cols=27  Identities=22%  Similarity=0.363  Sum_probs=23.6

Q ss_pred             cCcccccccccccC-CchhhHhhhhhhc
Q 028666           35 DINEWRCGYCKKSF-RAEKFLDQHFDNR   61 (205)
Q Consensus        35 ~~h~~rC~~C~K~F-~sE~~LDlHidnr   61 (205)
                      ....+.|..|+|.| .+...|..|+...
T Consensus        31 ~~~~~~C~~C~k~F~~~~~~L~~H~~~h   58 (96)
T 2ctd_A           31 DKGSVSCPTCQAVGRKTIEGLKKHMENC   58 (96)
T ss_dssp             HTSCEECTTTCSCEESSHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCCCcccCHHHHHHHHHHH
Confidence            45668999999999 8999999999753

>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding; 2.74A {Arabidopsis thaliana}

Probab=84.10  E-value=0.22  Score=45.47  Aligned_cols=31  Identities=32%  Similarity=0.750  Sum_probs=27.5

Q ss_pred             ccccc--cccccCCchhhHhhhhhhcccccccC
Q 028666           38 EWRCG--YCKKSFRAEKFLDQHFDNRHNNLLNV   68 (205)
Q Consensus        38 ~~rC~--~C~K~F~sE~~LDlHidnrH~~ll~~   68 (205)
                      .|+|+  .|+|=|....|+-+||.+.|..++..
T Consensus       304 K~~C~~~~C~KLFk~~eFV~KHi~~KH~e~v~~  336 (358)
T 3ax1_A          304 KYGCGAKGCTKLFHAAEFVYKHLKLKHTELVTE  336 (358)
T ss_dssp             EEEECSSSCCCEESSHHHHHHHHHHHCHHHHHH
T ss_pred             ccCCCCCCcCcccCCHHHHHHHHHhccHHHHHH
Confidence            35995  89999999999999999999987763

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=83.36  E-value=0.34  Score=35.74  Aligned_cols=27  Identities=22%  Similarity=0.539  Sum_probs=23.9

Q ss_pred             cccccccccccCCchhhHhhhhhhccc
Q 028666           37 NEWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        37 h~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      -.+.|.+|||.|.+...|..|+...|.
T Consensus        17 kpy~C~~Cgk~F~~~~~L~~H~r~~H~   43 (102)
T 2ghf_A           17 GGYECKYCTFQTPDLNMFTFHVDSEHP   43 (102)
T ss_dssp             SSEECSSCSCEESCHHHHHHHHHHHCS
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHhhCC
Confidence            457899999999999999999987674

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=81.83  E-value=0.49  Score=30.74  Aligned_cols=42  Identities=19%  Similarity=0.345  Sum_probs=29.2

Q ss_pred             cCccccccc--ccccCCchhhHhhhhhhcccccccCCccCchhhhccc
Q 028666           35 DINEWRCGY--CKKSFRAEKFLDQHFDNRHNNLLNVSHGKCLADLCGA   80 (205)
Q Consensus        35 ~~h~~rC~~--C~K~F~sE~~LDlHidnrH~~ll~~~~~~CLad~C~~   80 (205)
                      ....+.|..  |+|.|.+...|..|+...+..    ..-.|-.+.|+.
T Consensus        14 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~----~~~~C~~~~C~k   57 (72)
T 2epa_A           14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGE----KPFSCSWKGCER   57 (72)
T ss_dssp             CCCCEECSSTTTCCEESSHHHHHHHHHHHSSS----CSEECCCTTCCC
T ss_pred             ccCceeCCCCCCccccCCHHHHHHHHHhcCCC----CCccCCCCCCCc
Confidence            345678988  999999999999999654332    223554445553

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=81.11  E-value=0.4  Score=37.68  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=27.4

Q ss_pred             HhhhhhhcCcccccccccccCCchhhHhhhhhhc
Q 028666           28 EQHKIHVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        28 E~~k~h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      +.-+.|-....+.|..|+|.|.++..|..|+...
T Consensus        40 ~~ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           40 EFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSCSSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cccccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            3344555667899999999999999999998543

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=80.72  E-value=0.49  Score=33.69  Aligned_cols=29  Identities=14%  Similarity=0.457  Sum_probs=24.1

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      |-..-.+.|.+|+|.|.+...|..|+...
T Consensus        20 H~~~kpy~C~~C~k~F~~~~~L~~H~~~H   48 (88)
T 1x6f_A           20 RLQNSTYQCKHCDSKLQSTAELTSHLNIH   48 (88)
T ss_dssp             CCCCSCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             cCCCCCCcCCCCCCEeCCHHHHHHHHHHh
Confidence            44445689999999999999999998653

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.36  E-value=0.4  Score=31.02  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.9

Q ss_pred             ccccccccccCCchhhHhhhhhh
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      .+.|.+|||.|. ...|..|+..
T Consensus        10 ~~~C~~C~k~f~-~~~L~~H~~~   31 (66)
T 2eod_A           10 TQPCTYCTKEFV-FDTIQSHQYQ   31 (66)
T ss_dssp             EEECSSSCCEEE-HHHHHHHHHH
T ss_pred             CeeccccCCccC-HHHHHHHHHH
Confidence            478999999999 9999999875

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=80.11  E-value=0.53  Score=30.58  Aligned_cols=28  Identities=18%  Similarity=0.495  Sum_probs=23.2

Q ss_pred             cCcccccc--cccccCCchhhHhhhhhhcc
Q 028666           35 DINEWRCG--YCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        35 ~~h~~rC~--~C~K~F~sE~~LDlHidnrH   62 (205)
                      ..-.+.|.  .|+|.|.+...|..|+...+
T Consensus        16 ~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~   45 (73)
T 1f2i_G           16 KMRPYACPVESCDRRFSRSDELTRHIRIHT   45 (73)
T ss_dssp             CCCCEECSSTTBCCEESSHHHHHHHHHHHH
T ss_pred             CCCccCCcCCCCCCccCCHHHHHHHHHhhC
Confidence            44568997  59999999999999987543

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.08  E-value=0.49  Score=32.42  Aligned_cols=42  Identities=19%  Similarity=0.114  Sum_probs=28.9

Q ss_pred             ccCCchHhhhhhh---cCcccccccccccCCchhhHhhhhhhccccc
Q 028666           22 DMFRDQEQHKIHV---DINEWRCGYCKKSFRAEKFLDQHFDNRHNNL   65 (205)
Q Consensus        22 D~F~~~E~~k~h~---~~h~~rC~~C~K~F~sE~~LDlHidnrH~~l   65 (205)
                      ..|. ..+++.|.   ..-...|.+|+|.|. ...|+.|++.....-
T Consensus        25 ~~~~-~~~L~~H~~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A           25 LELS-ILKLKEHEDYCGARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CEEC-HHHHHHHHHHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             hHhh-HHHHHHHHhHcCCCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            3443 55555554   456688999999988 489999998755443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	95.62
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.33
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	95.04
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	94.84
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	94.8
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	94.69
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	94.66
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	94.4
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	93.86
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	93.68
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	93.17
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	91.84
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	91.7
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	91.23
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	90.42
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	90.04
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	89.34
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	88.33
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	88.05
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	87.48
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	87.08
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	86.8
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	86.75
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	86.26
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	86.15
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	85.38
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	85.31
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	82.16

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0016  Score=41.46  Aligned_cols=40  Identities=25%  Similarity=0.581  Sum_probs=32.5

Q ss_pred             CCccCCchHhhhhhhcC----cccccccccccCCchhhHhhhhh
Q 028666           20 DNDMFRDQEQHKIHVDI----NEWRCGYCKKSFRAEKFLDQHFD   59 (205)
Q Consensus        20 ~~D~F~~~E~~k~h~~~----h~~rC~~C~K~F~sE~~LDlHid   59 (205)
                      ..-.|.....+..|..+    -.++|.+|||.|.+...|..|+.
T Consensus         8 Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r   51 (53)
T d2csha1           8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK   51 (53)
T ss_dssp             TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHT
T ss_pred             CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHh
Confidence            34578888888888744    34899999999999999999973

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0024  Score=39.52  Aligned_cols=27  Identities=26%  Similarity=0.602  Sum_probs=24.2

Q ss_pred             ccccccccccCCchhhHhhhhhhcccc
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFDNRHNN   64 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHidnrH~~   64 (205)
                      -+.|.+|||.|.....|..||..-|..
T Consensus         5 py~C~~Cgk~F~~~~~L~~H~r~~Ht~   31 (39)
T d2epsa1           5 PYICQSCGKGFSRPDHLNGHIKQVHTS   31 (39)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHTSCC
T ss_pred             CccCCCCCCCcCChHHhhccCcCccCC
Confidence            468999999999999999999887764

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.004  Score=37.55  Aligned_cols=33  Identities=33%  Similarity=0.770  Sum_probs=27.1

Q ss_pred             hhhcCcccccccccccCCchhhHhhhhhhcccc
Q 028666           32 IHVDINEWRCGYCKKSFRAEKFLDQHFDNRHNN   64 (205)
Q Consensus        32 ~h~~~h~~rC~~C~K~F~sE~~LDlHidnrH~~   64 (205)
                      +|-..--+.|.+|||+|.....|..|+...|+.
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            344445678999999999999999999887753

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.0035  Score=35.89  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=19.1

Q ss_pred             cccccccccCCchhhHhhhhh
Q 028666           39 WRCGYCKKSFRAEKFLDQHFD   59 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHid   59 (205)
                      +.|.+|||.|.....|-+|..
T Consensus         3 y~C~eCgK~F~~~s~L~~Hqr   23 (26)
T d1x6ea2           3 YKCLECGKAFSQNSGLINHQR   23 (26)
T ss_dssp             EECSSSCCEESSHHHHHHHHH
T ss_pred             ccCCCCcCeeccCcccccCcc
Confidence            579999999999999999964

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0051  Score=35.71  Aligned_cols=22  Identities=27%  Similarity=0.658  Sum_probs=20.3

Q ss_pred             cccccccccCCchhhHhhhhhh
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      +.|.+|||+|.....|..|+..
T Consensus         3 y~C~~C~k~F~~~s~L~~H~r~   24 (29)
T d1sp1a_           3 FACPECPKRFMRSDHLSKHIKT   24 (29)
T ss_dssp             SCCTTTTCCCSCSHHHHHHHHG
T ss_pred             EECCcCCCeecchHHhhhhcCc
Confidence            6899999999999999999864

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.0048  Score=37.28  Aligned_cols=32  Identities=19%  Similarity=0.471  Sum_probs=27.0

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcccc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRHNN   64 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH~~   64 (205)
                      |-..--++|.+|+|.|.....|..|+...|..
T Consensus         3 HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           3 HSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             cCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            44445689999999999999999999988864

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=94.66  E-value=0.006  Score=35.32  Aligned_cols=21  Identities=24%  Similarity=0.825  Sum_probs=19.7

Q ss_pred             cccccccccCCchhhHhhhhh
Q 028666           39 WRCGYCKKSFRAEKFLDQHFD   59 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHid   59 (205)
                      +.|.+|||.|.....|..|+.
T Consensus         3 ~~C~~C~k~F~~~~~L~~H~r   23 (29)
T d2adra1           3 FVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCchHcccccC
Confidence            689999999999999999985

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.40  E-value=0.0072  Score=36.47  Aligned_cols=27  Identities=19%  Similarity=0.497  Sum_probs=23.1

Q ss_pred             ccccccccccCCchhhHhhhhhhccccc
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFDNRHNNL   65 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHidnrH~~l   65 (205)
                      -++|.+|+|.|.....|..|+. .|.+-
T Consensus         7 Py~C~~C~k~F~~~~~L~~H~r-~Ht~~   33 (35)
T d1srka_           7 PFVCRICLSAFTTKANCARHLK-VHTDT   33 (35)
T ss_dssp             CEECSSSCCEESSHHHHHHHHG-GGTSC
T ss_pred             cccCCCCCCcccChHHHHHHcc-ccCCc
Confidence            4789999999999999999984 56653

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.86  E-value=0.008  Score=34.67  Aligned_cols=22  Identities=23%  Similarity=0.706  Sum_probs=20.0

Q ss_pred             cccccccccCCchhhHhhhhhh
Q 028666           39 WRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        39 ~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      +.|.+|+|.|.....|..|+..
T Consensus         4 y~C~~C~k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           4 FQCRICMRNFSRSDHLTTHIRT   25 (28)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             ccCCCCcCEecccccccccCCC
Confidence            5899999999999999999853

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.013  Score=35.50  Aligned_cols=28  Identities=25%  Similarity=0.507  Sum_probs=23.5

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhh
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      |-..--+.|.+|||+|.....|..|+..
T Consensus         7 Ht~ekpy~C~~CgK~F~~~s~L~~H~r~   34 (38)
T d2cota2           7 QRERRRYKCDECGKSFSHSSDLSKHRRT   34 (38)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTT
T ss_pred             cCCCCCEecCCCCceeeCHHHHHHhCcc
Confidence            4455568999999999999999999753

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.015  Score=34.52  Aligned_cols=27  Identities=30%  Similarity=0.500  Sum_probs=22.7

Q ss_pred             hhcCcccccccccccCCchhhHhhhhh
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFD   59 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHid   59 (205)
                      |-..--+.|.+|||+|.....|..|+.
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r   28 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQR   28 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHH
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhcc
Confidence            444556899999999999999999975

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.84  E-value=0.037  Score=33.22  Aligned_cols=29  Identities=31%  Similarity=0.646  Sum_probs=23.6

Q ss_pred             hhcCcccccccccccCCchhhHhhhhhhcc
Q 028666           33 HVDINEWRCGYCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        33 h~~~h~~rC~~C~K~F~sE~~LDlHidnrH   62 (205)
                      |-..--+.|.+|+|+|.....|..|+. .|
T Consensus         6 HTgeKPy~C~~C~k~F~~~~~L~~H~r-~H   34 (37)
T d1p7aa_           6 STGIKPFQCPDCDRSFSRSDHLALHRK-RH   34 (37)
T ss_dssp             TCCSSSBCCTTTCCCBSSHHHHHHHHG-GG
T ss_pred             cCCccCeEeCCCCCEecCHHHHHHHHh-cC
Confidence            344456899999999999999999974 44

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.70  E-value=0.033  Score=31.67  Aligned_cols=20  Identities=30%  Similarity=0.659  Sum_probs=18.3

Q ss_pred             ccccccccCCchhhHhhhhh
Q 028666           40 RCGYCKKSFRAEKFLDQHFD   59 (205)
Q Consensus        40 rC~~C~K~F~sE~~LDlHid   59 (205)
                      +|..|.|.|-|.+||..|-.
T Consensus         2 qcp~c~k~f~skyylkvhnr   21 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNR   21 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHH
T ss_pred             cCcchHHHHHHhHhhhhccc
Confidence            79999999999999999954

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.23  E-value=0.026  Score=33.92  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=19.1

Q ss_pred             ccccccccccCCchhhHhhhhh
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFD   59 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHid   59 (205)
                      +.-|..|||.|..-++|+.|--
T Consensus         5 ~~~ce~cgk~frdvyhlnrhkl   26 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKL   26 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGG
T ss_pred             hhhHHHHHHHHHHHHHHHhhhc
Confidence            4579999999999999999853

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.42  E-value=0.055  Score=31.42  Aligned_cols=21  Identities=29%  Similarity=0.774  Sum_probs=19.4

Q ss_pred             ccccc--ccccCCchhhHhhhhh
Q 028666           39 WRCGY--CKKSFRAEKFLDQHFD   59 (205)
Q Consensus        39 ~rC~~--C~K~F~sE~~LDlHid   59 (205)
                      ++|.+  |||.|.....|..|+.
T Consensus         3 ~~C~~~gCgk~F~~~~~L~~H~r   25 (30)
T d2glia3           3 HKCTFEGCRKSYSRLENLKTHLR   25 (30)
T ss_dssp             CCCCSTTCCCCCSSHHHHHHHHH
T ss_pred             eeCCCCCCCceECChhHhhhhcC
Confidence            68999  9999999999999984

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.04  E-value=0.04  Score=34.51  Aligned_cols=25  Identities=32%  Similarity=0.594  Sum_probs=21.0

Q ss_pred             ccccccccccCCchhhHhhhhhhcccc
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFDNRHNN   64 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHidnrH~~   64 (205)
                      -++| .|||+|.....|..|+. .|..
T Consensus         3 ~y~C-~Cgk~F~~~~~l~~H~~-~Ht~   27 (53)
T d2csha1           3 LYPC-QCGKSFTHKSQRDRHMS-MHLG   27 (53)
T ss_dssp             CEEC-TTSCEESSHHHHHHHHH-HHSC
T ss_pred             CCCC-CCCCeECCHHHhHHHhh-cccc
Confidence            3789 69999999999999974 5653

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.34  E-value=0.068  Score=32.73  Aligned_cols=26  Identities=35%  Similarity=0.894  Sum_probs=22.7

Q ss_pred             cccccccccccCCchhhHhhhhhhccc
Q 028666           37 NEWRCGYCKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        37 h~~rC~~C~K~F~sE~~LDlHidnrH~   63 (205)
                      -.+.|.+|+|.|+|-..|.=|| +.|.
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~-~~Hr   29 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHM-NVHR   29 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHH-HTTC
T ss_pred             CccCCCCCCCccCCcccccchH-hhhc
Confidence            4578999999999999999998 5664

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.33  E-value=0.072  Score=30.54  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=18.5

Q ss_pred             ccccccccccCCchhhHhhhh
Q 028666           38 EWRCGYCKKSFRAEKFLDQHF   58 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHi   58 (205)
                      ...|.+|||.|-...-|..|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~   22 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQ   22 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHG
T ss_pred             cchHHHHhHHHHHHHHHHHHh
Confidence            356999999999999999886

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.05  E-value=0.073  Score=30.78  Aligned_cols=21  Identities=29%  Similarity=0.721  Sum_probs=19.1

Q ss_pred             ccccc--ccccCCchhhHhhhhh
Q 028666           39 WRCGY--CKKSFRAEKFLDQHFD   59 (205)
Q Consensus        39 ~rC~~--C~K~F~sE~~LDlHid   59 (205)
                      +.|.+  |||.|.....|..|+.
T Consensus         3 ~~C~~~gCgk~F~~~~~L~~H~r   25 (30)
T d1ubdc3           3 FQCTFEGCGKRFSLDFNLRTHVR   25 (30)
T ss_dssp             EECCSTTCCCEESCHHHHHHHHH
T ss_pred             ccCCCCCCCceECcHHHcCcccc
Confidence            57888  9999999999999985

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.48  E-value=0.098  Score=33.92  Aligned_cols=24  Identities=33%  Similarity=0.556  Sum_probs=20.5

Q ss_pred             ccccccccccCCchhhHhhhhhhc
Q 028666           38 EWRCGYCKKSFRAEKFLDQHFDNR   61 (205)
Q Consensus        38 ~~rC~~C~K~F~sE~~LDlHidnr   61 (205)
                      ..-|+.|||.|+.+.-|.+|-...
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHHhc
Confidence            467999999999999999996543

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.08  E-value=0.091  Score=31.45  Aligned_cols=24  Identities=38%  Similarity=0.749  Sum_probs=20.9

Q ss_pred             ccccc--ccccCCchhhHhhhhhhccc
Q 028666           39 WRCGY--CKKSFRAEKFLDQHFDNRHN   63 (205)
Q Consensus        39 ~rC~~--C~K~F~sE~~LDlHidnrH~   63 (205)
                      +.|.+  |||.|.....|..|+.. |.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~-Ht   27 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKL-HS   27 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHH-HH
T ss_pred             eECCCCCCCCeeCChhHhccccCe-eC
Confidence            57887  99999999999999876 44

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.80  E-value=0.098  Score=30.27  Aligned_cols=20  Identities=25%  Similarity=0.625  Sum_probs=17.9

Q ss_pred             cccccCCchhhHhhhhhhcc
Q 028666           43 YCKKSFRAEKFLDQHFDNRH   62 (205)
Q Consensus        43 ~C~K~F~sE~~LDlHidnrH   62 (205)
                      -|||.|.+..||+-|+.-.|
T Consensus         7 gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           7 GCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             TTCCEESSHHHHHHHHHHGG
T ss_pred             CchhhhccHHHHHhHHHHHH
Confidence            39999999999999988766

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.75  E-value=0.15  Score=29.80  Aligned_cols=22  Identities=27%  Similarity=0.558  Sum_probs=19.1

Q ss_pred             ccccc--ccccCCchhhHhhhhhh
Q 028666           39 WRCGY--CKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        39 ~rC~~--C~K~F~sE~~LDlHidn   60 (205)
                      +.|.+  |||.|.....|..|+..
T Consensus         4 ~~C~~pgC~k~F~r~~~L~~H~r~   27 (32)
T d1zfda_           4 YSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             BCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             eECcCCCCCCeeCCHHHHHHHhhh
Confidence            57888  99999999999999754

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.26  E-value=0.1  Score=30.04  Aligned_cols=21  Identities=24%  Similarity=0.643  Sum_probs=18.7

Q ss_pred             ccccc--ccccCCchhhHhhhhh
Q 028666           39 WRCGY--CKKSFRAEKFLDQHFD   59 (205)
Q Consensus        39 ~rC~~--C~K~F~sE~~LDlHid   59 (205)
                      +.|.+  |||.|.+...|..|+.
T Consensus         3 ~~C~~~gC~k~F~~~~~L~~H~r   25 (29)
T d1a1ia1           3 YACPVESCDRRFSRSADLTRHIR   25 (29)
T ss_dssp             EECCSTTCCCEESSHHHHHHHTH
T ss_pred             eECCCCCCCcEECchhHhhhhcC
Confidence            57888  9999999999999974

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.15  E-value=0.13  Score=29.38  Aligned_cols=21  Identities=29%  Similarity=0.695  Sum_probs=18.7

Q ss_pred             ccccc--ccccCCchhhHhhhhh
Q 028666           39 WRCGY--CKKSFRAEKFLDQHFD   59 (205)
Q Consensus        39 ~rC~~--C~K~F~sE~~LDlHid   59 (205)
                      +.|.+  |||+|-....|..|+.
T Consensus         3 f~C~~~gC~K~F~~~~~L~~H~r   25 (28)
T d1ubdc4           3 YVCPFDGCNKKFAQSTNLKSHIL   25 (28)
T ss_dssp             CCCCSTTCCCCCSSTTTTHHHHH
T ss_pred             cCCCCCCcCCcCCCHHHHHHHHh
Confidence            46888  9999999999999985

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.38  E-value=0.1  Score=32.79  Aligned_cols=31  Identities=16%  Similarity=0.432  Sum_probs=25.4

Q ss_pred             hhhhhcCccccccc--ccccCCchhhHhhhhhh
Q 028666           30 HKIHVDINEWRCGY--CKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        30 ~k~h~~~h~~rC~~--C~K~F~sE~~LDlHidn   60 (205)
                      +-.|...--+.|.+  |+|.|.....|..|+..
T Consensus        10 h~~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~   42 (47)
T d1ncsa_          10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             hhhccCCCCeECCcCCCCccccCchHHHhhccc
Confidence            33455667899998  99999999999999753

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.31  E-value=0.14  Score=34.83  Aligned_cols=26  Identities=27%  Similarity=0.431  Sum_probs=23.4

Q ss_pred             cCcccccccccccCCchhhHhhhhhh
Q 028666           35 DINEWRCGYCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        35 ~~h~~rC~~C~K~F~sE~~LDlHidn   60 (205)
                      ...+|-|..|+|.|.|+.-|..|+..
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCEEecccccCccCCHHHHHHHHcc
Confidence            45789999999999999999999864

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.16  E-value=0.29  Score=28.21  Aligned_cols=22  Identities=32%  Similarity=0.694  Sum_probs=18.7

Q ss_pred             cccc--cccccCCchhhHhhhhhh
Q 028666           39 WRCG--YCKKSFRAEKFLDQHFDN   60 (205)
Q Consensus        39 ~rC~--~C~K~F~sE~~LDlHidn   60 (205)
                      +.|.  .|||.|.....|..|+..
T Consensus         3 f~C~~~~C~k~F~~~~~L~~H~r~   26 (31)
T d1sp2a_           3 FMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             CCCcCCCCCcCcCChhHhhhhcCc
Confidence            4675  599999999999999953