BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028667
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
pdb|4FRY|B Chain B, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
Length = 157
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 105/155 (67%), Gaps = 8/155 (5%)
Query: 50 GFESTTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAG 108
G STT++ ILKAK G ++ T +D VYDA+K M + +GAL+VV + +AG
Sbjct: 3 GSMSTTVAQILKAKPDS--GRTIYTVTKNDFVYDAIKLMAEKGIGALLVV---DGDDIAG 57
Query: 109 IITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVI 168
I+TERDY RK+++Q RSSK+T+V +IMT K+ V P M LMT++R+RH+PV+
Sbjct: 58 IVTERDYARKVVLQERSSKATRVEEIMT--AKVRYVEPSQSTDECMALMTEHRMRHLPVL 115
Query: 169 DDKGMIGMVSIGDVVRAVVSEHREELNRLNAFIQG 203
D +IG++SIGD+V++V+++ + +++L +I G
Sbjct: 116 DGGKLIGLISIGDLVKSVIADQQFTISQLEHYIHG 150
>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|B Chain B, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|C Chain C, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|D Chain D, Crystal Structure Of Cbs Domain, Ne2398
Length = 135
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 87/137 (63%), Gaps = 9/137 (6%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERD 114
T+ +L+ KG + + DD+V++A++ M N+GAL+V+K + + GI+TERD
Sbjct: 7 TVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMK---DEKLVGILTERD 59
Query: 115 YLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI 174
+ RK + + K T+V +IMT + + ++ + M L+T+ R+RH+PV+DD +I
Sbjct: 60 FSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNE--DCMALITEMRVRHLPVLDDGKVI 117
Query: 175 GMVSIGDVVRAVVSEHR 191
G++SIGD+V+ +S+H+
Sbjct: 118 GLLSIGDLVKDAISQHQ 134
>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|B Chain B, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|C Chain C, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|D Chain D, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
Length = 165
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 80/151 (52%), Gaps = 8/151 (5%)
Query: 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
+T + D+L KG+ + D ++ +A ++ H +GA+VV V GI TE
Sbjct: 23 ATFVKDLLDRKGR----DVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA--DGVVLGIFTE 76
Query: 113 RDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG 172
RD ++ + QG +S V MT+ ++ ++ + M++MT R RH+PV ++
Sbjct: 77 RDLVKAVAGQGAASLQQSVSVAMTK--NVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGR 134
Query: 173 MIGMVSIGDVVRAVVSEHREELNRLNAFIQG 203
+ G++SIGDVV+A + E E + A+I G
Sbjct: 135 LAGIISIGDVVKARIGEIEAEAEHIKAYIAG 165
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 14/119 (11%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVV---KPGEQKSVAGIITERDYLRKIIVQGRSSKS 128
+ T D + D K T+ N+G+++VV KP GIITERD + K I +G+S +
Sbjct: 15 ISVTKDAKLNDIAKVXTEKNIGSVIVVDGNKP------VGIITERDIV-KAIGKGKSLE- 66
Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI-GMVSIGDVVRAV 186
TK + T LIT+ D+ + A+ L IRH+PV+DDKG + G++SI D+ RA+
Sbjct: 67 TKAEEFXTA--SLITIREDSPITGALALXRQFNIRHLPVVDDKGNLKGIISIRDITRAI 123
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 72/131 (54%), Gaps = 15/131 (11%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T D TV +A+ M ++ +G L VV E+ + G++T RD V+ + S K+
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVD--EEGRLVGLLTNRD------VRFEKNLSKKI 157
Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID-DKGMIGMVSIGDVVRAVVSEH 190
D+MT KLI PD + +A +++ +RI +P++ D ++G+++I D++ + EH
Sbjct: 158 KDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVI--EH 215
Query: 191 ----REELNRL 197
R+E RL
Sbjct: 216 PNAARDEKGRL 226
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 67/113 (59%), Gaps = 14/113 (12%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ D+TV A+ M +H + L VV E + V GIIT++D + R K K
Sbjct: 104 ITIAPDETVDFALFLMEKHGIDGLPVV---EDEKVVGIITKKD------IAAREGKLVK- 153
Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVV 183
++MT+E +ITV +V A+++M +NRI +PV+D++G ++G++++ D+V
Sbjct: 154 -ELMTKE--VITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLV 203
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 29/42 (69%)
Query: 141 LITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDV 182
+IT++PD V A+ LM + I +PV++D+ ++G+++ D+
Sbjct: 103 VITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDI 144
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 66/116 (56%), Gaps = 8/116 (6%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T + VYDA M ++ + + VV +++ + GIIT RD +R I S K+
Sbjct: 124 FFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRD-MRFI-----QDYSIKI 177
Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI-GMVSIGDVVRAV 186
D+MT+E +LIT T + A +++ +I +P++D+ G++ G+++I D+ + +
Sbjct: 178 SDVMTKE-QLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVI 232
>pdb|1XKF|A Chain A, Crystal Structure Of Hypoxic Response Protein I (Hrpi)
With Two Coordinated Zinc Ions
pdb|1XKF|B Chain B, Crystal Structure Of Hypoxic Response Protein I (Hrpi)
With Two Coordinated Zinc Ions
Length = 133
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 69/135 (51%), Gaps = 13/135 (9%)
Query: 51 FESTTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI 109
F TT DI+ A + C + +T+ A + M +H++GAL + G+ + G+
Sbjct: 5 FTMTTARDIMNA--------GVTCVGEHETLTAAAQYMREHDIGALPIC--GDDDRLHGM 54
Query: 110 ITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID 169
+T+RD + K + G + G++ + + V + + + +M ++++R +PVI
Sbjct: 55 LTDRDIVIKGLAAGLDPNTATAGELA--RDSIYYVDANASIQEMLNVMEEHQVRRVPVIS 112
Query: 170 DKGMIGMVSIGDVVR 184
+ ++G+V+ D+ R
Sbjct: 113 EHRLVGIVTEADIAR 127
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T + VYDA ++ + + VV +++ + GIIT RD R I S K+
Sbjct: 124 FFLTPEHQVYDAEHLXGKYRISGVPVVNNLDERKLVGIITNRD-XRFI-----QDYSIKI 177
Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI-GMVSIGDVVRAV 186
D+ T+E +LIT T + A +++ +I +P++D+ G++ G+++I D+ + +
Sbjct: 178 SDVXTKE-QLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVI 232
>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp And Moa Bound
pdb|1MEI|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Mycophenolic Acid
Bound
pdb|1MEW|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Nad Bound
pdb|1AK5|A Chain A, Inosine Monophosphate Dehydrogenase (impdh) From
Tritrichomonas Foetus
Length = 503
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 77 DDTVYD--AVKSMTQHNVGALVVVKPGEQKSVA-GIITERDYLRKIIVQGRSSKSTKVGD 133
D T D A+ T HN + V G V G++T+RDY + + TKV D
Sbjct: 113 DQTFADVLAISQRTTHNT--VAVTDDGTPHGVLLGLVTQRDYPIDL-----TQTETKVSD 165
Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD 170
+MT +KL+T DTK+ A +++ + ++ +P+IDD
Sbjct: 166 MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD 202
>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp Bound
pdb|1ME9|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp Bound
pdb|1MEH|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp And Moa Bound
Length = 503
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 77 DDTVYD--AVKSMTQHNVGALVVVKPGEQKSVA-GIITERDYLRKIIVQGRSSKSTKVGD 133
D T D A+ T HN + V G V G++T+RDY + + TKV D
Sbjct: 113 DQTFADVLAISQRTTHNT--VAVTDDGTPHGVLLGLVTQRDYPIDL-----TQTETKVSD 165
Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD 170
+MT +KL+T DTK+ A +++ + ++ +P+IDD
Sbjct: 166 MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD 202
>pdb|1Y5H|A Chain A, Crystal Structure Of Truncated Se-Met Hypoxic Response
Protein I (Hrpi)
pdb|1Y5H|B Chain B, Crystal Structure Of Truncated Se-Met Hypoxic Response
Protein I (Hrpi)
Length = 133
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 51 FESTTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI 109
F TT DI A + C + +T+ A + +H++GAL + G+ + G
Sbjct: 5 FTXTTARDIXNA--------GVTCVGEHETLTAAAQYXREHDIGALPIC--GDDDRLHGX 54
Query: 110 ITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID 169
+T+RD + K + G + G++ + + V + + + + ++++R +PVI
Sbjct: 55 LTDRDIVIKGLAAGLDPNTATAGELA--RDSIYYVDANASIQEXLNVXEEHQVRRVPVIS 112
Query: 170 DKGMIGMVSIGDVVR 184
+ ++G+V+ D+ R
Sbjct: 113 EHRLVGIVTEADIAR 127
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID-DKGMIGMVSIGDVV 183
VG+ MT++ L V P T V A++L+ +NRI PVID D ++G+VS D++
Sbjct: 7 VGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLL 60
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSE 189
VGD+MT + V T + A +++ + + R +PV+D G ++G+++ G+VVRA +
Sbjct: 101 VGDLMTPAP--LVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQI 158
Query: 190 HR 191
R
Sbjct: 159 KR 160
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID-DKGMIGMVSIGDVV 183
VG+ MT++ L V P T V A++L+ +NRI PVID D ++G+VS D++
Sbjct: 7 VGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLL 60
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSE 189
VGD+MT + V T + A +++ + + R +PV+D G ++G+++ G+VVRA +
Sbjct: 87 VGDLMTPAP--LVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQI 144
Query: 190 HR 191
R
Sbjct: 145 KR 146
>pdb|2YVY|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+ Bound Form
Length = 278
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Query: 116 LRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MI 174
LR +IV + T+V +IM K++ V DT +LM D +PV+D++G ++
Sbjct: 189 LRDLIV---ADPRTRVAEIMN--PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLV 243
Query: 175 GMVSIGDVVRAVVSEHREELNRLNA 199
G+V++ DV+ + +E E++++L A
Sbjct: 244 GIVTVDDVLDVLEAEATEDIHKLGA 268
>pdb|1PBJ|A Chain A, Cbs Domain Protein
Length = 125
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 82 DAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKL 141
D +++ ++ G+ VVVK G + GI+T D L + I +G KV ++ E L
Sbjct: 22 DVLRNYVENAKGSSVVVKEGVR---VGIVTTWDVL-EAIAEGDDLAEVKVWEVX--ERDL 75
Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
+T+SP + A + N + + V +D +IG++S D++RA
Sbjct: 76 VTISPRATIKEAAEKXVKNVVWRLLVEEDDEIIGVISATDILRA 119
>pdb|2YZI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
pdb|2YZI|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 138
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK 130
L +V +A + + +VG+LVV+ + +V G T+ D +R++IV G
Sbjct: 17 LLGVKPSTSVQEASRLXXEFDVGSLVVI--NDDGNVVGFFTKSDIIRRVIVPGLPY---- 70
Query: 131 VGDIMTEE---NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
DI E LIT + +T + ++ ++RI+HI + ++ ++G+ ++ D++ A
Sbjct: 71 --DIPVERIXTRNLITANVNTPLGEVLRKXAEHRIKHILIEEEGKIVGIFTLSDLLEA 126
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVV 187
KL+ V P T V A +L + + + VI+D G ++G + D++R V+
Sbjct: 16 KLLGVKPSTSVQEASRLXXEFDVGSLVVINDDGNVVGFFTKSDIIRRVI 64
>pdb|2YVX|A Chain A, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|B Chain B, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|C Chain C, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|D Chain D, Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|A Chain A, Improved Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|B Chain B, Improved Crystal Structure Of Magnesium Transporter Mgte
Length = 473
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Query: 116 LRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MI 174
LR +IV + T+V +IM K++ V DT +LM D +PV+D++G ++
Sbjct: 209 LRDLIV---ADPRTRVAEIMN--PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLV 263
Query: 175 GMVSIGDVVRAVVSEHREELNRLNA 199
G+V++ DV+ + +E E++++L A
Sbjct: 264 GIVTVDDVLDVLEAEATEDIHKLGA 288
>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205)
From Streptococcus Pyogenes
Length = 491
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 68/129 (52%), Gaps = 10/129 (7%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T + V +A + ++ + + +V+ + + GIIT RD R I S + +
Sbjct: 101 FFLTPEHKVSEAEELXQRYRISGVPIVETLANRKLVGIITNRD-XRFI-----SDYNAPI 154
Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI-GMVSIGDVVRAVVSEH 190
+ T E+ L+T + T + A +++ ++RI +P++D+ G + G+++I D+ + + H
Sbjct: 155 SEHXTSEH-LVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPH 213
Query: 191 --REELNRL 197
++E RL
Sbjct: 214 AAKDEFGRL 222
>pdb|3K2V|A Chain A, Structure Of The Cbs Pair Of A Putative D-Arabinose
5-Phosphate Isomerase From Klebsiella Pneumoniae Subsp.
Pneumoniae.
pdb|3K2V|B Chain B, Structure Of The Cbs Pair Of A Putative D-Arabinose
5-Phosphate Isomerase From Klebsiella Pneumoniae Subsp.
Pneumoniae
Length = 149
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
T+ DA+ +T+ N+G + + ++ GI T+ D LR++ G + + D+ T
Sbjct: 48 TLRDALLEITRKNLGXTAICD--DDXNIIGIFTDGD-LRRVFDTGVDXRDASIADVXTRG 104
Query: 139 NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185
I + P T + A+ L I + V D ++G+V D++RA
Sbjct: 105 G--IRIRPGTLAVDALNLXQSRHITCVLVADGDHLLGVVHXHDLLRA 149
>pdb|2QH1|A Chain A, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
pdb|2QH1|B Chain B, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
Length = 198
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
TV+DAVK M ++++ LVV + + G+++ER +++ I + + + +M +
Sbjct: 41 TVFDAVKIMNENHLYGLVV--KDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP 98
Query: 139 NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
+ V D V +++N + V+DD G ++G+V++ D+ R +
Sbjct: 99 --IPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL 145
>pdb|1PVM|A Chain A, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
pdb|1PVM|B Chain B, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
Length = 184
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
TV+DAVK M ++++ LVV + + G+++ER +++ I R+ K +V +
Sbjct: 27 TVFDAVKIMNENHLYGLVV--KDDNGNDVGLLSERSIIKRFI--PRNKKPDEVPIRLVMR 82
Query: 139 NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
+ V D V +++N + V+DD G ++G+V++ D+ R +
Sbjct: 83 KPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL 131
>pdb|3GHD|A Chain A, Crystal Structure Of A Cystathionine Beta-Synthase Domain
Protein Fused To A Zn-Ribbon-Like Domain
pdb|3GHD|B Chain B, Crystal Structure Of A Cystathionine Beta-Synthase Domain
Protein Fused To A Zn-Ribbon-Like Domain
Length = 70
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137
DTV K ++++ G+ VV E + G++TERD L K++ +G++ K KV +I T+
Sbjct: 9 DTVDRVAKILSRNKAGSAVVX---EGDEILGVVTERDILDKVVAKGKNPKEVKVEEIXTK 65
>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|B Chain B, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|C Chain C, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|D Chain D, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
Length = 138
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 62/113 (54%), Gaps = 11/113 (9%)
Query: 80 VYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEEN 139
V +A + ++ + +L V+ ++ V GI+T D +I + + + T +GD+ T++
Sbjct: 27 VVEAFEKXLKYKISSLPVI--DDENKVIGIVTTTDIGYNLI-RDKYTLETTIGDVXTKD- 82
Query: 140 KLITVSPDTKVLRAMQLM-----TDNRIRHIPVID-DKGMIGMVSIGDVVRAV 186
+IT+ D +L A++ + I +PV+D + ++G++S GD++R +
Sbjct: 83 -VITIHEDASILEAIKKXDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTI 134
>pdb|2YVZ|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+-Free Form
pdb|2YVZ|B Chain B, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+-Free Form
Length = 278
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 116 LRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MI 174
LR +IV + T+V +I K++ V DT +L D +PV+D++G ++
Sbjct: 189 LRDLIV---ADPRTRVAEIXN--PKVVYVRTDTDQEEVARLXADYDFTVLPVVDEEGRLV 243
Query: 175 GMVSIGDVVRAVVSEHREELNRLNA 199
G+V++ DV+ + +E E++++L A
Sbjct: 244 GIVTVDDVLDVLEAEATEDIHKLGA 268
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDK-GMIGMVSIGDVV 183
VGD T L V P T V A++L+ + ++ +PVIDD ++G+VS D++
Sbjct: 6 VGDFXTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLL 59
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 82 DAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKL 141
+A+++ NVG +V ++ + +ITERD +R ++ + ++ + D +T + +
Sbjct: 105 EAIETFLTKNVGGAPIV--NDENQLISLITERDVIRALL--DKIDENEVIDDYITRD--V 158
Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSE 189
I +P ++ + M N R +PV+ + ++G+++ D ++ + S+
Sbjct: 159 IVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSD 206
Score = 33.9 bits (76), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 135 MTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID--DKGMIGMVSIGDVV 183
+ + K++TV P T + +A+ M +N+ R +PV++ + ++G+++ D+V
Sbjct: 8 IAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIV 58
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI-----IVQGRSSKS 128
T + + D ++M ++ L VV G + GIIT D+++ + ++
Sbjct: 161 ATPGERLKDVARTMVRNGFRRLPVVSEGR---LVGIITSTDFIKLLGSDWAFNHMQTGNV 217
Query: 129 TKVGDIMTEE---NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI-GMVSIGDVVR 184
++ ++ EE +IT K+ + ++M N I +PV+D+ I G+++ DV++
Sbjct: 218 REITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLK 277
>pdb|2RIF|A Chain A, Cbs Domain Protein Pae2072 From Pyrobaculum Aerophilum
Complexed With Amp
pdb|2RIF|B Chain B, Cbs Domain Protein Pae2072 From Pyrobaculum Aerophilum
Complexed With Amp
pdb|2RIF|C Chain C, Cbs Domain Protein Pae2072 From Pyrobaculum Aerophilum
Complexed With Amp
pdb|2RIF|D Chain D, Cbs Domain Protein Pae2072 From Pyrobaculum Aerophilum
Complexed With Amp
pdb|2RIH|A Chain A, Cbs Domain Protein Pae2072 From Pyrobaculum Aerophilum
pdb|2RIH|B Chain B, Cbs Domain Protein Pae2072 From Pyrobaculum Aerophilum
Length = 141
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
T+ + + ++ VG V+ K +++ERD LR + + + G M
Sbjct: 23 TIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAV-----AQRLDLDGPAMPIA 77
Query: 139 NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVV--RAVVSE 189
N ITV V A + M + IRH+ V++ G ++G++SI D+ RA++ E
Sbjct: 78 NSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAILLE 131
>pdb|3FV6|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor
pdb|3FV6|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor
pdb|3FWR|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Adp
pdb|3FWR|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Adp
pdb|3FWS|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Appnp, Phosphate
And Magnesium Ions
pdb|3FWS|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Appnp, Phosphate
And Magnesium Ions
Length = 159
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
+VYDA+ +M +VG L VV + G+++ +D LR I Q + S V IMT
Sbjct: 34 SVYDAICTMFLEDVGTLFVV--DRDAVLVGVLSRKDLLRASIGQQELT-SVPVHIIMTRM 90
Query: 139 NKLITVSPDTKVLRAMQLMTDNRIRHIPVID--DKGM--IGMVSIGDVVRAVVSEHREEL 194
+ + V+ + + + +I +PVI DKG IG V+ ++ + +VS E+
Sbjct: 91 PNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLSENEI 150
>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|E Chain E, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
pdb|4EAG|C Chain C, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
pdb|4EAI|C Chain C, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|C Chain C, Co-Crystal Of Ampk Core With Amp Soaked With Atp
pdb|4EAK|C Chain C, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|C Chain C, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 330
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 23/151 (15%)
Query: 45 RMEEHGFES---TTISDILKAKGKGADGSWLWCTTDD-TVYDAVKSMTQHNVGALVVVKP 100
+EEH E+ + D K L C + + +++DAV S+ ++ + L V+ P
Sbjct: 107 ELEEHKIETWREVYLQDSFKP---------LVCISPNASLFDAVSSLIRNKIHRLPVIDP 157
Query: 101 GEQKSVAGIITER---DYLRKIIVQGRS----SKSTKVGDIMTEENKLITVSPDTKVLRA 153
E + I+T + +L+ I + SKS + I T N + V T V A
Sbjct: 158 -ESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYAN-IAMVRTTTPVYVA 215
Query: 154 MQLMTDNRIRHIPVIDDKG-MIGMVSIGDVV 183
+ + +R+ +PV+D+KG ++ + S DV+
Sbjct: 216 LGIFVQHRVSALPVVDEKGRVVDIYSKFDVI 246
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDK--GMIGMVSIGDVV 183
KS + D++ +KL+ +V +A + N +R P+ D K +GM++I D +
Sbjct: 33 KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI 91
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 18/87 (20%)
Query: 101 GEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENK---------------LITVS 145
+++S G++T D++ + R KS V EE+K L+ +S
Sbjct: 76 SKKQSFVGMLTITDFIN---ILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCIS 132
Query: 146 PDTKVLRAMQLMTDNRIRHIPVIDDKG 172
P+ + A+ + N+I +PVID +
Sbjct: 133 PNASLFDAVSSLIRNKIHRLPVIDPES 159
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 102 EQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNR 161
EQ + GI+T RD ++ + + V IMT ++KL+T T + + +NR
Sbjct: 146 EQGELVGIVTGRD------LRVKPNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENR 199
Query: 162 IRHIPVIDDKGMI-GMVSIGDVVRA 185
I + V+D+ + G+V+ D+ +A
Sbjct: 200 IEKMLVVDENFYLRGLVTFRDIEKA 224
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVS---------IGDVVRAVVS 188
+TV+P TK++ +Q+ + PV++ ++G+V+ GD V A+++
Sbjct: 119 VTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLRVKPNAGDTVAAIMT 174
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 102 EQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNR 161
EQ + GI+T RD ++ + + V IMT ++KL+T T + + +NR
Sbjct: 126 EQGELVGIVTGRD------LRVKPNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENR 179
Query: 162 IRHIPVIDDKGMI-GMVSIGDVVRA 185
I + V+D+ + G+V+ D+ +A
Sbjct: 180 IEKMLVVDENFYLRGLVTFRDIEKA 204
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVS---------IGDVVRAVVS 188
+TV+P TK++ +Q+ + PV++ ++G+V+ GD V A+++
Sbjct: 99 VTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLRVKPNAGDTVAAIMT 154
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 80 VYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYLRKIIVQGRSSKSTKV--GD- 133
+++A M + G + ++ E+ + V ++T+ L+ + + R + K+ GD
Sbjct: 126 LFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDL 185
Query: 134 -IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI 174
I+T++N + + T V+ +Q++T R+ +P+ID+ G +
Sbjct: 186 NIITQDN-MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYL 226
>pdb|1O50|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein
(Tm0935) From Thermotoga Maritima At 1.87 A Resolution
Length = 157
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDV 182
+ V DT + A++LM DN I+ +PV+D+KG I +GD+
Sbjct: 106 VYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEI----VGDL 142
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 80 VYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYLRKIIVQGRSSKSTKV--GD- 133
+++A M + G + ++ E+ + V ++T+ L+ + + R + K+ GD
Sbjct: 133 LFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDL 192
Query: 134 -IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI 174
I+T++N + + T V+ +Q++T R+ +P+ID+ G +
Sbjct: 193 NIITQDN-MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYL 233
>pdb|4ESY|A Chain A, Crystal Structure Of The Cbs Domain Of Cbs Domain
Containing Membrane Protein From Sphaerobacter
Thermophilus
Length = 170
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII---------VQGRSSK 127
DDT+ K+ +H +G VV + + GIITE D+LR I + R+
Sbjct: 34 DDTLDAVAKTXLEHQIGCAPVVD--QNGHLVGIITESDFLRGSIPFWIYEASEILSRAIP 91
Query: 128 STKVGDIMTEENKL----------ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMV 177
+ +V + KL +T +P+ V + I IPV+ D +G+V
Sbjct: 92 APEVEHLFETGRKLTASAVXTQPVVTAAPEDSVGSIADQXRRHGIHRIPVVQDGVPVGIV 151
Query: 178 S 178
+
Sbjct: 152 T 152
>pdb|4ESY|B Chain B, Crystal Structure Of The Cbs Domain Of Cbs Domain
Containing Membrane Protein From Sphaerobacter
Thermophilus
Length = 170
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII---------VQGRSSK 127
DDT+ K+ +H +G VV + + GIITE D+LR I + R+
Sbjct: 34 DDTLDAVAKTXLEHQIGXAPVVD--QNGHLVGIITESDFLRGSIPFWIYEASEILSRAIP 91
Query: 128 STKVGDIMTEENKL----------ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMV 177
+ +V + KL +T +P+ V + I IPV+ D +G+V
Sbjct: 92 APEVEHLFETGRKLTASAVXTQPVVTAAPEDSVGSIADQXRRHGIHRIPVVQDGVPVGIV 151
Query: 178 S 178
+
Sbjct: 152 T 152
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 122
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
T V DI+++ IT + ++ A +++ + I H+P++D+ G ++G+++ D+ +A+
Sbjct: 1 TLVKDILSKPP--ITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKAL 57
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 124
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAV 186
T V DI+++ IT + ++ A +++ + I H+P++D+ G ++G+++ D+ +A+
Sbjct: 3 TLVKDILSKPP--ITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKAL 59
>pdb|2XED|A Chain A, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
pdb|2XED|B Chain B, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
pdb|2XED|C Chain C, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
pdb|2XED|D Chain D, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
Length = 273
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 21 QRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTV 80
QR+ LV P +RP+ A +E GF TISD + AD + + C + V
Sbjct: 147 QRVALVTPYMRPLAEKVV-----AYLEAEGF---TISDWRAL--EVADNTEVGCIPGEQV 196
Query: 81 YDAVKSMTQHNVGALVVVKPGEQKSVAGIIT-ERDY 115
A +S+ V ALV+ + S+ + T ER++
Sbjct: 197 MAAARSLDLSEVDALVISCAVQMPSLPLVETAEREF 232
>pdb|2XEC|A Chain A, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
pdb|2XEC|B Chain B, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
pdb|2XEC|C Chain C, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
pdb|2XEC|D Chain D, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
Length = 273
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 21 QRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTV 80
QR+ LV P +RP+ A +E GF TISD + AD + + C + V
Sbjct: 147 QRVALVTPYMRPLAEKVV-----AYLEAEGF---TISDWRAL--EVADNTEVGCIPGEQV 196
Query: 81 YDAVKSMTQHNVGALVV 97
A +S+ V ALV+
Sbjct: 197 MAAARSLDLSEVDALVI 213
>pdb|3KXR|A Chain A, Structure Of The Cystathionine Beta-Synthase Pair Domain
Of The Putative Mg2+ Transporter So5017 From Shewanella
Oneidensis Mr-1
Length = 205
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSEHRE 192
+++E+++ +T + T +L A + + +R +PVIDD G +IG V++ A+V EH E
Sbjct: 121 LLSEDSRALTAN--TTLLDAAEAIEHSREIELPVIDDAGELIGRVTLR-AATALVREHYE 177
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 24/118 (20%)
Query: 89 QHNVGALV----VVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITV 144
Q NV +L VV G A + E + + S KV + ENK +T
Sbjct: 104 QGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKV--VSFSENKFLTA 161
Query: 145 SPDT--------KVLRAMQLMTDNRIRHIPVIDD--------KGMIGMVS--IGDVVR 184
S D KV++ + ++ +RH+ V+DD G+I +V GDV+R
Sbjct: 162 SADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLR 219
>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
pdb|3P6A|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
Length = 377
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 45 RMEEHGFESTTISDILKAKGKGADGSWL------WCTTDDTVYDAVKSMTQHNVGALVVV 98
R +E G+ I D+L A+ GA+GSW +C+ + +K+ + + V
Sbjct: 92 RRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFV 151
Query: 99 KPGEQK 104
+ E +
Sbjct: 152 QEAESR 157
>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
pdb|3ODO|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
Length = 375
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 45 RMEEHGFESTTISDILKAKGKGADGSWL------WCTTDDTVYDAVKSMTQHNVGALVVV 98
R +E G+ I D+L A+ GA+GSW +C+ + +K+ + + V
Sbjct: 90 RRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFV 149
Query: 99 KPGEQK 104
+ E +
Sbjct: 150 QEAESR 155
>pdb|3ODX|A Chain A, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
pdb|3ODX|B Chain B, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
Length = 417
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 45 RMEEHGFESTTISDILKAKGKGADGSWL------WCTTDDTVYDAVKSMTQHNVGALVVV 98
R +E G+ I D+L A+ GA+GSW +C+ + +K+ + + V
Sbjct: 132 RRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFV 191
Query: 99 KPGEQK 104
+ E +
Sbjct: 192 QEAESR 197
>pdb|3ODW|A Chain A, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
pdb|3ODW|B Chain B, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
Length = 536
Score = 30.0 bits (66), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 45 RMEEHGFESTTISDILKAKGKGADGSWL------WCTTDDTVYDAVKSMTQHNVGALVVV 98
R +E G+ I D+L A+ GA+GSW +C+ + +K+ + + V
Sbjct: 245 RRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFV 304
Query: 99 KPGEQKS 105
+ E +
Sbjct: 305 QEAESRP 311
>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 282
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 152 RAMQLMTDNRIRHIPVIDDKGM-IGMVSIGDVVR 184
+A +LM + R + V+D KG +G++++GD++R
Sbjct: 81 KAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIR 114
>pdb|1JCN|A Chain A, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
pdb|1JCN|B Chain B, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
Length = 514
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKS-VAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137
TV D +++ +H + + + G S + GI+T RD I +T + ++MT
Sbjct: 126 TVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRD----IDFLAEKDHTTLLSEVMTP 181
Query: 138 ENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD 170
+L+ + A +++ ++ +P+++D
Sbjct: 182 RIELVVAPAGVTLKEANEILQRSKKGKLPIVND 214
>pdb|2O16|A Chain A, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
pdb|2O16|B Chain B, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
Length = 160
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 153 AMQLMTDNRIRHIPVID-DKGMIGMVSIGDVVRA 185
A LM IRH+P++D +K ++G+VS D++ A
Sbjct: 27 AKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAA 60
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 104 KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLI--------TVSPDTKVLRAMQ 155
K + GI+++RD L Q S + + GD + E L +V+P + +
Sbjct: 46 KKLLGIVSQRDLLA---AQESSLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAI 102
Query: 156 LMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVS 188
M ++I +PV+ ++G+++ D V ++
Sbjct: 103 YMQKHKIGCLPVVAKDVLVGIITDSDFVTIAIN 135
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 131 VGD--IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI 174
+GD I+T++N + + T V+ +Q++T R+ +P+ID+ G +
Sbjct: 10 IGDLNIITQDN-MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYL 54
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 58 DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
D++KA AD + V+DA+K + N L++ G ++ ++ E + +
Sbjct: 165 DLVKANKLNADPA-------SVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMN 217
Query: 118 KIIVQGRSSKSTKVG---DIMTEENKLITVSPDTKV 150
KII Q S +V D T +N +I +KV
Sbjct: 218 KIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKV 253
>pdb|1Y07|A Chain A, Crystal Structure Of The Superoxide Reductase From
Treponema Pallidum
pdb|1Y07|B Chain B, Crystal Structure Of The Superoxide Reductase From
Treponema Pallidum
pdb|1Y07|C Chain C, Crystal Structure Of The Superoxide Reductase From
Treponema Pallidum
pdb|1Y07|D Chain D, Crystal Structure Of The Superoxide Reductase From
Treponema Pallidum
Length = 128
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 143 TVSPDTKVLRAMQLMTDN--RIRHIPVIDDKGMIGMVSIGDVVRAVVSEH 190
+V+ ++VLRA+ + T + + +HIPV++ G V +G V + EH
Sbjct: 27 SVACGSEVLRAVPVGTVDAAKEKHIPVVEVHGHEVKVKVGSVAHPMTPEH 76
>pdb|2IDA|A Chain A, Solution Nmr Structure Of Protein Rpa1320 From
Rhodopseudomonas Palustris. Northeast Structural
Genomics Consortium Target Rpt3; Ontario Center For
Structural Proteomics Target Rp1313
Length = 102
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 63 KGKGADGSWLWCTTDDTVYDAVKSMTQHN 91
+G W WC D+ ++D MT HN
Sbjct: 67 EGYDPPEGWGWCYVDEVMFDLSDRMTPHN 95
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 102 EQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNR 161
+ S I E D R + G K+G I E I V P ++ A M+ +R
Sbjct: 86 QSSSFPEAIAEIDKFRLL---GLREVERKIGAIPPET---IYVHPMHSLMDACLAMSKSR 139
Query: 162 IRHIPVIDDKGMIGMVSIGDVVRAVVSEHR 191
R IP+ID G G +++ +V++++R
Sbjct: 140 ARRIPLIDVDGETG----SEMIVSVLTQYR 165
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 102 EQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNR 161
+ S I E D R + G K+G I E I V P ++ A M+ +R
Sbjct: 85 QSSSFPEAIAEIDKFRLL---GLREVERKIGAIPPET---IYVHPMHSLMDACLAMSKSR 138
Query: 162 IRHIPVIDDKGMIGMVSIGDVVRAVVSEHR 191
R IP+ID G G +++ +V++++R
Sbjct: 139 ARRIPLIDVDGETG----SEMIVSVLTQYR 164
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 92 VGALVVVKPGEQKSVAGIITE-RDYLRKIIVQG------RSSKSTKVGDIMTEEN----K 140
VG L+ V+PGE+ V G + E R ++ + +V G + + + +G + + K
Sbjct: 246 VGDLLRVRPGEKIPVDGEVQEGRSFVDESMVTGEPIPVAKEASAKVIGATINQTGSFVMK 305
Query: 141 LITVSPDTKVLRAMQLMTDNRIRHIPV 167
+ V DT + R +Q+++D + P+
Sbjct: 306 ALHVGSDTMLARIVQMVSDAQRSRAPI 332
>pdb|1KKE|A Chain A, Crystal Structure Of Reovirus Attachment Protein Sigma1
Trimer
pdb|1KKE|B Chain B, Crystal Structure Of Reovirus Attachment Protein Sigma1
Trimer
pdb|1KKE|C Chain C, Crystal Structure Of Reovirus Attachment Protein Sigma1
Trimer
Length = 210
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 111 TERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD 170
TE+ Y+ + R + STKV D++ + + L S +R+ T +R+ P+ D
Sbjct: 4 TEQSYVASAVTPLRLNSSTKVLDMLIDSSTLEINSSGQLTVRS----TSPNLRY-PIADV 58
Query: 171 KGMIGM 176
G IGM
Sbjct: 59 SGGIGM 64
>pdb|2C0H|A Chain A, X-Ray Structure Of Beta-Mannanase From Blue Mussel Mytilus
Edulis
Length = 353
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 31 RPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH 90
+P+V F +EHG ++ S A KG G+W W TD + + ++ M QH
Sbjct: 288 KPMVIGEFN-------QEHGAGMSSESMFEWAYTKGYSGAWTWSRTDVSWNNQLRGM-QH 339
>pdb|3DDJ|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein In
Complex With Amp (Sso3205) From Sulfolobus Solfataricus
At 1.80 A Resolution
Length = 296
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 20/119 (16%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI-----IVQGRSS 126
++ T+D+ + A+ N G+L VV ++ GI+TER++L I +
Sbjct: 106 VYNTSDE--FTAINIXVTRNFGSLPVVDINDKP--VGIVTEREFLLLYKDLDEIFPVKVF 161
Query: 127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVR 184
STKV I E ++ +A++L R +PVIDD ++G+V++ + ++
Sbjct: 162 XSTKVQTIYKE----------VRLDQAVKLXLRRGFRRLPVIDDDNKVVGIVTVVNAIK 210
>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
pdb|2NYE|B Chain B, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 131 VGD--IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI 174
+GD I+T++N + T V+ +Q +T R+ +P+ID+ G +
Sbjct: 10 IGDLNIITQDNXK-SCQXTTPVIDVIQXLTQGRVSSVPIIDENGYL 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,356,803
Number of Sequences: 62578
Number of extensions: 190780
Number of successful extensions: 650
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 100
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)