Query 028667
Match_columns 205
No_of_seqs 155 out of 1834
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 15:05:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2524 Predicted transcriptio 99.8 9.6E-20 2.1E-24 140.1 12.6 123 51-188 169-292 (294)
2 COG4109 Predicted transcriptio 99.8 2.4E-19 5.2E-24 143.4 11.8 164 22-201 149-322 (432)
3 COG3448 CBS-domain-containing 99.8 1.5E-18 3.3E-23 136.0 12.4 169 13-192 202-377 (382)
4 COG3620 Predicted transcriptio 99.8 2.7E-18 6E-23 123.1 10.8 123 52-188 63-185 (187)
5 PRK10892 D-arabinose 5-phospha 99.8 1.1E-17 2.3E-22 138.1 15.1 122 52-185 200-323 (326)
6 cd04619 CBS_pair_6 The CBS dom 99.8 2.2E-17 4.7E-22 115.6 13.5 110 71-184 3-113 (114)
7 cd04630 CBS_pair_17 The CBS do 99.8 3.1E-17 6.6E-22 114.7 13.8 110 71-184 3-113 (114)
8 TIGR00400 mgtE Mg2+ transporte 99.7 2.1E-17 4.6E-22 141.5 13.7 132 51-200 128-265 (449)
9 cd04623 CBS_pair_10 The CBS do 99.7 1.1E-16 2.4E-21 111.2 14.3 111 70-184 2-112 (113)
10 cd04603 CBS_pair_KefB_assoc Th 99.7 8.5E-17 1.8E-21 112.1 13.2 107 71-184 3-110 (111)
11 PRK11543 gutQ D-arabinose 5-ph 99.7 6.3E-17 1.4E-21 133.2 14.3 122 53-185 196-318 (321)
12 PRK15094 magnesium/cobalt effl 99.7 3E-17 6.5E-22 133.0 11.7 132 51-195 64-197 (292)
13 cd04617 CBS_pair_4 The CBS dom 99.7 1.8E-16 3.9E-21 111.6 13.7 111 71-184 3-117 (118)
14 PRK01862 putative voltage-gate 99.7 4.8E-17 1E-21 143.4 13.0 168 10-189 385-573 (574)
15 cd04641 CBS_pair_28 The CBS do 99.7 1.7E-16 3.8E-21 111.9 13.3 111 70-184 2-119 (120)
16 COG2905 Predicted signal-trans 99.7 3E-17 6.6E-22 138.6 10.1 162 14-187 103-270 (610)
17 cd04625 CBS_pair_12 The CBS do 99.7 4.6E-16 1E-20 108.1 13.6 109 71-184 3-111 (112)
18 cd04621 CBS_pair_8 The CBS dom 99.7 4.4E-16 9.5E-21 112.5 13.5 111 70-184 2-134 (135)
19 COG2239 MgtE Mg/Co/Ni transpor 99.7 1.1E-16 2.3E-21 135.4 11.5 171 11-199 88-265 (451)
20 cd04629 CBS_pair_16 The CBS do 99.7 3.4E-16 7.5E-21 109.0 12.2 110 71-184 3-113 (114)
21 cd04607 CBS_pair_NTP_transfera 99.7 7E-16 1.5E-20 107.5 13.4 108 71-184 4-112 (113)
22 cd04600 CBS_pair_HPP_assoc Thi 99.7 4.8E-16 1E-20 110.0 12.5 111 70-184 3-123 (124)
23 cd04593 CBS_pair_EriC_assoc_ba 99.7 8.2E-16 1.8E-20 107.5 13.4 109 71-184 3-114 (115)
24 cd04639 CBS_pair_26 The CBS do 99.7 7.2E-16 1.6E-20 107.0 12.8 107 71-184 3-110 (111)
25 TIGR03520 GldE gliding motilit 99.7 2E-16 4.3E-21 133.8 11.8 137 44-194 179-318 (408)
26 cd04801 CBS_pair_M50_like This 99.7 4.8E-16 1E-20 108.5 11.9 109 71-184 3-113 (114)
27 cd04626 CBS_pair_13 The CBS do 99.7 1.2E-15 2.6E-20 105.9 13.4 108 71-184 3-110 (111)
28 cd04615 CBS_pair_2 The CBS dom 99.7 1.2E-15 2.5E-20 106.2 13.3 109 71-184 3-112 (113)
29 cd04636 CBS_pair_23 The CBS do 99.7 1.1E-15 2.3E-20 109.7 13.2 111 70-184 2-131 (132)
30 cd04596 CBS_pair_DRTGG_assoc T 99.7 9.9E-16 2.1E-20 106.0 12.5 104 70-184 3-107 (108)
31 PRK07807 inosine 5-monophospha 99.7 5.3E-16 1.2E-20 132.9 13.5 121 51-189 86-207 (479)
32 cd04643 CBS_pair_30 The CBS do 99.7 8.3E-16 1.8E-20 107.4 12.2 108 71-184 3-115 (116)
33 cd04589 CBS_pair_CAP-ED_DUF294 99.7 1.9E-15 4E-20 105.0 13.9 108 71-184 3-110 (111)
34 cd04618 CBS_pair_5 The CBS dom 99.7 5.9E-16 1.3E-20 105.8 11.1 92 71-184 3-97 (98)
35 cd04587 CBS_pair_CAP-ED_DUF294 99.7 9.3E-16 2E-20 106.7 12.3 109 71-184 3-112 (113)
36 cd04800 CBS_pair_CAP-ED_DUF294 99.7 1.9E-15 4.1E-20 104.8 13.6 108 71-184 3-110 (111)
37 cd04802 CBS_pair_3 The CBS dom 99.7 2.4E-15 5.2E-20 104.5 14.1 109 71-184 3-111 (112)
38 cd04595 CBS_pair_DHH_polyA_Pol 99.7 2E-15 4.4E-20 104.6 13.6 107 70-184 3-109 (110)
39 cd04803 CBS_pair_15 The CBS do 99.7 1.2E-15 2.7E-20 107.6 12.7 110 71-184 3-121 (122)
40 cd04627 CBS_pair_14 The CBS do 99.7 1.2E-15 2.7E-20 108.0 12.7 110 70-183 2-121 (123)
41 cd04608 CBS_pair_PALP_assoc Th 99.7 4E-16 8.6E-21 111.1 10.1 111 71-186 4-124 (124)
42 cd04622 CBS_pair_9 The CBS dom 99.7 1.6E-15 3.6E-20 105.4 13.0 109 71-184 3-112 (113)
43 cd04586 CBS_pair_BON_assoc Thi 99.7 8.5E-16 1.8E-20 110.7 11.7 111 70-184 3-134 (135)
44 cd04624 CBS_pair_11 The CBS do 99.7 2.7E-15 5.9E-20 104.2 13.7 108 71-184 3-111 (112)
45 cd04613 CBS_pair_SpoIVFB_EriC_ 99.7 2.3E-15 5E-20 104.7 13.3 109 71-184 3-113 (114)
46 cd04604 CBS_pair_KpsF_GutQ_ass 99.7 2.1E-15 4.6E-20 104.9 13.1 110 70-184 3-113 (114)
47 cd04605 CBS_pair_MET2_assoc Th 99.7 2.9E-15 6.3E-20 103.7 13.7 106 70-184 3-109 (110)
48 cd04582 CBS_pair_ABC_OpuCA_ass 99.7 2.4E-15 5.3E-20 103.4 13.2 102 71-184 3-105 (106)
49 cd04590 CBS_pair_CorC_HlyC_ass 99.7 2.3E-15 5E-20 104.4 13.1 106 71-184 3-110 (111)
50 cd04640 CBS_pair_27 The CBS do 99.7 2.2E-15 4.9E-20 107.2 13.1 112 71-184 3-125 (126)
51 cd04583 CBS_pair_ABC_OpuCA_ass 99.7 2.7E-15 5.8E-20 103.6 13.1 104 71-184 4-108 (109)
52 cd04631 CBS_pair_18 The CBS do 99.7 1.8E-15 3.9E-20 107.2 12.1 110 71-184 3-124 (125)
53 cd04611 CBS_pair_PAS_GGDEF_DUF 99.7 4.2E-15 9.1E-20 102.9 13.3 107 71-184 3-110 (111)
54 cd04599 CBS_pair_GGDEF_assoc2 99.7 3.9E-15 8.4E-20 102.2 12.8 101 71-183 3-103 (105)
55 cd04633 CBS_pair_20 The CBS do 99.7 3.1E-15 6.7E-20 105.4 12.4 110 70-184 2-120 (121)
56 cd04632 CBS_pair_19 The CBS do 99.7 3.5E-15 7.5E-20 106.3 12.7 110 71-184 3-127 (128)
57 cd04642 CBS_pair_29 The CBS do 99.7 3E-15 6.4E-20 106.6 12.3 109 71-184 3-125 (126)
58 cd04594 CBS_pair_EriC_assoc_ar 99.7 3.4E-15 7.4E-20 102.7 12.1 101 71-184 3-103 (104)
59 cd04614 CBS_pair_1 The CBS dom 99.7 2.4E-15 5.1E-20 102.3 11.0 93 70-184 2-95 (96)
60 cd04620 CBS_pair_7 The CBS dom 99.6 5.9E-15 1.3E-19 103.1 13.3 108 71-184 3-114 (115)
61 cd04602 CBS_pair_IMPDH_2 This 99.6 5.2E-15 1.1E-19 103.4 12.4 104 71-184 4-113 (114)
62 cd04606 CBS_pair_Mg_transporte 99.6 3.5E-15 7.5E-20 103.4 11.2 101 74-185 2-108 (109)
63 cd04585 CBS_pair_ACT_assoc2 Th 99.6 8.2E-15 1.8E-19 103.0 13.1 109 71-184 3-121 (122)
64 cd04588 CBS_pair_CAP-ED_DUF294 99.6 1.1E-14 2.4E-19 100.8 13.3 106 71-184 3-109 (110)
65 cd04635 CBS_pair_22 The CBS do 99.6 5.4E-15 1.2E-19 104.2 11.6 110 71-184 3-121 (122)
66 PRK07107 inosine 5-monophospha 99.6 5.3E-15 1.2E-19 127.5 13.6 122 54-186 94-219 (502)
67 cd04591 CBS_pair_EriC_assoc_eu 99.6 9.2E-15 2E-19 101.0 12.2 98 71-184 4-104 (105)
68 cd04601 CBS_pair_IMPDH This cd 99.6 7E-15 1.5E-19 101.6 11.4 104 71-184 4-109 (110)
69 PRK11573 hypothetical protein; 99.6 6.1E-15 1.3E-19 124.9 13.1 135 51-195 184-319 (413)
70 cd04638 CBS_pair_25 The CBS do 99.6 2.6E-14 5.7E-19 98.4 13.5 103 71-184 3-105 (106)
71 cd04610 CBS_pair_ParBc_assoc T 99.6 1.8E-14 3.9E-19 99.1 12.5 102 71-184 4-106 (107)
72 cd04612 CBS_pair_SpoIVFB_EriC_ 99.6 2.2E-14 4.8E-19 99.3 13.0 107 71-184 3-110 (111)
73 cd04584 CBS_pair_ACT_assoc Thi 99.6 2.1E-14 4.5E-19 101.0 12.8 110 71-184 3-120 (121)
74 TIGR01137 cysta_beta cystathio 99.6 1.9E-14 4.1E-19 123.8 15.1 122 51-186 332-453 (454)
75 PLN02274 inosine-5'-monophosph 99.6 2.2E-14 4.7E-19 123.9 14.0 110 71-188 110-223 (505)
76 TIGR01303 IMP_DH_rel_1 IMP deh 99.6 1.9E-14 4E-19 123.4 13.3 120 51-189 85-205 (475)
77 cd04609 CBS_pair_PALP_assoc2 T 99.6 3.6E-14 7.8E-19 97.9 12.3 107 70-184 2-109 (110)
78 cd04637 CBS_pair_24 The CBS do 99.6 4E-14 8.7E-19 99.9 12.2 109 71-184 3-121 (122)
79 cd04634 CBS_pair_21 The CBS do 99.6 7.8E-14 1.7E-18 101.6 13.5 110 70-184 2-142 (143)
80 TIGR00393 kpsF KpsF/GutQ famil 99.6 3.5E-14 7.6E-19 114.0 12.6 114 53-178 154-268 (268)
81 TIGR01302 IMP_dehydrog inosine 99.6 2.5E-14 5.4E-19 122.5 12.2 117 55-187 81-201 (450)
82 cd02205 CBS_pair The CBS domai 99.6 1.4E-13 3.1E-18 94.6 13.7 109 71-184 3-112 (113)
83 PRK05567 inosine 5'-monophosph 99.6 6E-14 1.3E-18 121.3 13.3 117 55-187 88-205 (486)
84 COG1253 TlyC Hemolysins and re 99.5 6.6E-14 1.4E-18 119.4 12.6 142 43-196 193-337 (429)
85 cd04598 CBS_pair_GGDEF_assoc T 99.5 8.6E-14 1.9E-18 97.6 11.1 109 71-184 3-118 (119)
86 PTZ00314 inosine-5'-monophosph 99.5 5.8E-14 1.3E-18 121.2 12.0 109 71-187 106-218 (495)
87 COG4535 CorC Putative Mg2+ and 99.5 7.6E-14 1.6E-18 106.6 8.9 168 10-196 28-198 (293)
88 COG0517 FOG: CBS domain [Gener 99.5 5.8E-13 1.3E-17 92.9 12.8 106 71-183 9-117 (117)
89 cd04592 CBS_pair_EriC_assoc_eu 99.5 6.1E-13 1.3E-17 95.9 10.9 98 71-170 3-117 (133)
90 PRK14869 putative manganese-de 99.4 2.2E-12 4.7E-17 113.4 14.2 124 54-188 68-305 (546)
91 COG4536 CorB Putative Mg2+ and 99.3 3.3E-12 7.1E-17 103.7 8.2 137 51-197 197-334 (423)
92 PF00571 CBS: CBS domain CBS d 99.2 6.9E-11 1.5E-15 72.3 7.6 56 56-120 1-56 (57)
93 PF00571 CBS: CBS domain CBS d 99.2 7.8E-11 1.7E-15 72.0 7.0 55 131-187 1-56 (57)
94 TIGR01186 proV glycine betaine 99.1 2.8E-09 6E-14 89.1 13.7 107 72-189 253-360 (363)
95 PRK10070 glycine betaine trans 99.1 2.7E-09 5.9E-14 90.1 13.4 105 74-189 290-395 (400)
96 KOG1764 5'-AMP-activated prote 99.1 1.7E-09 3.6E-14 90.7 12.0 117 71-189 239-361 (381)
97 KOG2550 IMP dehydrogenase/GMP 99.0 8.7E-10 1.9E-14 90.6 7.2 110 70-187 117-228 (503)
98 TIGR00400 mgtE Mg2+ transporte 98.9 1E-09 2.2E-14 94.3 3.2 117 52-190 193-309 (449)
99 KOG0474 Cl- channel CLC-7 and 98.9 4E-09 8.8E-14 90.8 6.4 128 51-187 579-747 (762)
100 COG3620 Predicted transcriptio 98.7 5E-08 1.1E-12 70.7 7.7 76 111-190 49-124 (187)
101 PRK14869 putative manganese-de 98.6 1.2E-08 2.7E-13 89.8 2.5 143 29-185 224-391 (546)
102 KOG0475 Cl- channel CLC-3 and 98.6 1.6E-06 3.5E-11 75.2 13.7 114 71-186 558-694 (696)
103 COG2524 Predicted transcriptio 98.6 1.9E-07 4.2E-12 72.7 7.0 59 52-119 232-290 (294)
104 cd04603 CBS_pair_KefB_assoc Th 98.5 2.7E-07 5.9E-12 63.8 6.0 56 53-117 55-110 (111)
105 cd04619 CBS_pair_6 The CBS dom 98.5 5.1E-07 1.1E-11 62.7 6.7 56 52-116 57-112 (114)
106 cd04597 CBS_pair_DRTGG_assoc2 98.4 5.8E-07 1.3E-11 62.7 6.2 54 54-116 58-111 (113)
107 cd04597 CBS_pair_DRTGG_assoc2 98.4 7.8E-07 1.7E-11 62.0 6.0 54 129-184 58-112 (113)
108 COG3448 CBS-domain-containing 98.4 4.8E-07 1E-11 72.0 4.6 60 126-187 242-302 (382)
109 KOG1764 5'-AMP-activated prote 98.4 4.5E-06 9.7E-11 70.2 10.7 119 71-190 164-289 (381)
110 cd04607 CBS_pair_NTP_transfera 98.3 1.9E-06 4.2E-11 59.4 6.9 55 53-116 57-111 (113)
111 cd04600 CBS_pair_HPP_assoc Thi 98.3 2E-06 4.4E-11 60.3 6.6 57 52-117 67-123 (124)
112 cd04604 CBS_pair_KpsF_GutQ_ass 98.3 2.9E-06 6.2E-11 58.4 7.0 57 52-117 57-113 (114)
113 cd04617 CBS_pair_4 The CBS dom 98.3 1.7E-06 3.8E-11 60.3 5.9 59 51-116 55-116 (118)
114 PRK11573 hypothetical protein; 98.3 4.4E-06 9.6E-11 71.2 9.4 71 113-187 175-247 (413)
115 cd04620 CBS_pair_7 The CBS dom 98.3 2.4E-06 5.3E-11 59.1 6.6 56 53-117 57-114 (115)
116 cd04606 CBS_pair_Mg_transporte 98.3 2.6E-06 5.6E-11 58.5 6.5 56 53-117 52-107 (109)
117 cd04615 CBS_pair_2 The CBS dom 98.3 3E-06 6.6E-11 58.3 6.8 58 51-117 55-112 (113)
118 cd04596 CBS_pair_DRTGG_assoc T 98.3 3.3E-06 7.1E-11 57.8 6.8 57 52-117 51-107 (108)
119 PRK15094 magnesium/cobalt effl 98.3 7.2E-06 1.6E-10 66.8 9.8 95 54-158 133-228 (292)
120 cd04585 CBS_pair_ACT_assoc2 Th 98.3 3.2E-06 6.9E-11 58.8 6.7 56 53-117 66-121 (122)
121 cd04630 CBS_pair_17 The CBS do 98.3 3.2E-06 6.9E-11 58.5 6.6 56 52-117 58-113 (114)
122 cd04618 CBS_pair_5 The CBS dom 98.2 2.3E-06 5E-11 58.0 5.3 56 54-117 41-97 (98)
123 cd04608 CBS_pair_PALP_assoc Th 98.2 5.1E-06 1.1E-10 58.7 7.2 51 140-190 3-54 (124)
124 cd04610 CBS_pair_ParBc_assoc T 98.2 4.6E-06 9.9E-11 56.8 6.8 56 53-117 51-106 (107)
125 cd04641 CBS_pair_28 The CBS do 98.2 5E-06 1.1E-10 58.1 7.1 49 140-188 2-51 (120)
126 cd04625 CBS_pair_12 The CBS do 98.2 4.6E-06 9.9E-11 57.3 6.5 55 53-117 57-111 (112)
127 PRK05567 inosine 5'-monophosph 98.2 1.2E-05 2.5E-10 70.1 10.2 113 53-184 146-264 (486)
128 TIGR03520 GldE gliding motilit 98.2 1.5E-05 3.3E-10 67.8 10.7 94 55-159 256-350 (408)
129 cd04582 CBS_pair_ABC_OpuCA_ass 98.2 5.6E-06 1.2E-10 56.3 6.6 55 54-117 51-105 (106)
130 cd04803 CBS_pair_15 The CBS do 98.2 6.6E-06 1.4E-10 57.4 7.1 57 52-117 65-121 (122)
131 cd04611 CBS_pair_PAS_GGDEF_DUF 98.2 6E-06 1.3E-10 56.5 6.7 57 52-117 54-110 (111)
132 cd04583 CBS_pair_ABC_OpuCA_ass 98.2 5.5E-06 1.2E-10 56.5 6.5 56 53-117 53-108 (109)
133 cd04635 CBS_pair_22 The CBS do 98.2 6E-06 1.3E-10 57.6 6.7 57 52-117 65-121 (122)
134 smart00116 CBS Domain in cysta 98.2 7.5E-06 1.6E-10 46.9 6.1 46 141-186 2-48 (49)
135 cd04587 CBS_pair_CAP-ED_DUF294 98.2 5.1E-06 1.1E-10 57.1 6.2 54 54-116 58-111 (113)
136 cd04631 CBS_pair_18 The CBS do 98.2 6.6E-06 1.4E-10 57.7 6.8 56 53-117 69-124 (125)
137 cd04801 CBS_pair_M50_like This 98.2 3.8E-06 8.3E-11 58.0 5.4 58 53-117 56-113 (114)
138 cd04623 CBS_pair_10 The CBS do 98.2 6.9E-06 1.5E-10 56.3 6.7 55 53-117 58-112 (113)
139 cd04627 CBS_pair_14 The CBS do 98.2 5.2E-06 1.1E-10 58.3 6.0 43 71-115 78-120 (123)
140 cd04639 CBS_pair_26 The CBS do 98.2 7.1E-06 1.5E-10 56.3 6.6 55 53-116 55-109 (111)
141 cd04621 CBS_pair_8 The CBS dom 98.2 7.3E-06 1.6E-10 58.9 6.8 55 53-117 80-134 (135)
142 cd04595 CBS_pair_DHH_polyA_Pol 98.2 7.6E-06 1.6E-10 56.1 6.6 56 52-117 54-109 (110)
143 smart00116 CBS Domain in cysta 98.2 9.6E-06 2.1E-10 46.4 6.1 46 71-118 2-47 (49)
144 PRK07807 inosine 5-monophospha 98.2 1.4E-05 3E-10 69.2 9.4 99 54-169 148-246 (479)
145 cd04601 CBS_pair_IMPDH This cd 98.2 7.4E-06 1.6E-10 55.9 6.4 56 53-117 53-109 (110)
146 cd04602 CBS_pair_IMPDH_2 This 98.2 6.8E-06 1.5E-10 56.9 6.3 55 54-117 57-113 (114)
147 TIGR01303 IMP_DH_rel_1 IMP deh 98.1 2.2E-05 4.8E-10 67.9 10.4 58 53-119 145-202 (475)
148 cd04800 CBS_pair_CAP-ED_DUF294 98.1 8E-06 1.7E-10 56.0 6.4 55 53-117 56-110 (111)
149 PRK07107 inosine 5-monophospha 98.1 2.2E-05 4.9E-10 68.3 10.4 60 52-118 159-218 (502)
150 cd04586 CBS_pair_BON_assoc Thi 98.1 6.4E-06 1.4E-10 58.8 6.0 56 52-117 79-134 (135)
151 cd04593 CBS_pair_EriC_assoc_ba 98.1 8.1E-06 1.8E-10 56.5 6.3 56 53-117 57-114 (115)
152 cd04588 CBS_pair_CAP-ED_DUF294 98.1 1.1E-05 2.3E-10 55.2 6.9 55 54-117 55-109 (110)
153 cd04629 CBS_pair_16 The CBS do 98.1 7.1E-06 1.5E-10 56.5 5.8 55 53-117 59-113 (114)
154 cd04592 CBS_pair_EriC_assoc_eu 98.1 1.4E-05 3E-10 57.4 7.5 49 140-188 2-51 (133)
155 cd04599 CBS_pair_GGDEF_assoc2 98.1 9.9E-06 2.1E-10 54.9 6.4 54 53-116 50-103 (105)
156 cd04622 CBS_pair_9 The CBS dom 98.1 1E-05 2.2E-10 55.6 6.5 55 54-117 58-112 (113)
157 cd04640 CBS_pair_27 The CBS do 98.1 5.4E-06 1.2E-10 58.5 5.1 59 52-117 62-125 (126)
158 cd04633 CBS_pair_20 The CBS do 98.1 7.5E-06 1.6E-10 57.1 5.8 56 52-117 65-120 (121)
159 cd04590 CBS_pair_CorC_HlyC_ass 98.1 1E-05 2.2E-10 55.5 6.3 53 54-116 57-109 (111)
160 cd04605 CBS_pair_MET2_assoc Th 98.1 1.3E-05 2.8E-10 54.8 6.9 54 54-116 55-108 (110)
161 cd04626 CBS_pair_13 The CBS do 98.1 9.3E-06 2E-10 55.7 6.1 54 53-116 56-109 (111)
162 cd04636 CBS_pair_23 The CBS do 98.1 1E-05 2.3E-10 57.5 6.5 54 54-117 78-131 (132)
163 cd04613 CBS_pair_SpoIVFB_EriC_ 98.1 9.1E-06 2E-10 55.8 5.9 56 53-117 57-113 (114)
164 PRK11543 gutQ D-arabinose 5-ph 98.1 1.1E-05 2.5E-10 66.4 7.2 57 52-117 261-317 (321)
165 cd04637 CBS_pair_24 The CBS do 98.1 1.4E-05 3.1E-10 55.8 6.7 55 54-117 67-121 (122)
166 cd04632 CBS_pair_19 The CBS do 98.1 1.3E-05 2.9E-10 56.5 6.6 58 53-117 70-127 (128)
167 cd04624 CBS_pair_11 The CBS do 98.1 1.6E-05 3.4E-10 54.6 6.7 56 53-117 56-111 (112)
168 cd04802 CBS_pair_3 The CBS dom 98.1 1.4E-05 3.1E-10 54.8 6.5 56 52-117 56-111 (112)
169 cd04589 CBS_pair_CAP-ED_DUF294 98.1 1.5E-05 3.4E-10 54.6 6.6 56 52-117 55-110 (111)
170 PLN02274 inosine-5'-monophosph 98.1 9.3E-05 2E-09 64.6 12.7 62 52-120 161-222 (505)
171 cd04612 CBS_pair_SpoIVFB_EriC_ 98.1 1.9E-05 4E-10 54.0 6.9 55 54-117 56-110 (111)
172 cd04614 CBS_pair_1 The CBS dom 98.1 1.4E-05 3E-10 53.9 5.9 56 54-117 40-95 (96)
173 COG1253 TlyC Hemolysins and re 98.0 1.9E-05 4.1E-10 67.7 8.0 82 107-190 186-269 (429)
174 PRK10892 D-arabinose 5-phospha 98.0 1.4E-05 3E-10 66.0 7.0 57 51-117 266-322 (326)
175 cd04584 CBS_pair_ACT_assoc Thi 98.0 2.3E-05 4.9E-10 54.5 6.8 56 52-117 65-120 (121)
176 cd04642 CBS_pair_29 The CBS do 98.0 1.6E-05 3.4E-10 56.1 6.0 45 71-117 81-125 (126)
177 cd04643 CBS_pair_30 The CBS do 98.0 2.4E-05 5.2E-10 54.0 6.8 49 140-188 2-51 (116)
178 cd04609 CBS_pair_PALP_assoc2 T 98.0 2.7E-05 5.9E-10 53.0 7.0 50 140-189 2-51 (110)
179 cd04594 CBS_pair_EriC_assoc_ar 98.0 2E-05 4.3E-10 53.6 5.9 54 54-117 50-103 (104)
180 TIGR03415 ABC_choXWV_ATP choli 98.0 5.1E-05 1.1E-09 64.0 9.0 84 90-188 298-381 (382)
181 TIGR01137 cysta_beta cystathio 97.9 3.3E-05 7.2E-10 66.6 7.3 86 101-188 300-393 (454)
182 cd04598 CBS_pair_GGDEF_assoc T 97.9 3.2E-05 6.9E-10 53.7 5.9 57 52-117 59-118 (119)
183 PTZ00314 inosine-5'-monophosph 97.9 0.00013 2.8E-09 63.6 10.8 59 53-118 158-216 (495)
184 cd04591 CBS_pair_EriC_assoc_eu 97.9 4.6E-05 1E-09 52.1 5.8 49 59-117 56-104 (105)
185 COG4536 CorB Putative Mg2+ and 97.8 1.1E-05 2.4E-10 66.3 3.0 107 84-205 170-278 (423)
186 PRK01862 putative voltage-gate 97.8 4.4E-05 9.6E-10 67.8 6.9 59 128-188 446-505 (574)
187 cd04634 CBS_pair_21 The CBS do 97.8 7.8E-05 1.7E-09 53.9 6.5 55 52-116 87-141 (143)
188 cd02205 CBS_pair The CBS domai 97.8 9.4E-05 2E-09 50.0 6.5 53 56-117 60-112 (113)
189 COG0517 FOG: CBS domain [Gener 97.8 8.2E-05 1.8E-09 51.3 5.8 52 55-115 63-116 (117)
190 cd04638 CBS_pair_25 The CBS do 97.7 0.00013 2.9E-09 49.5 6.2 54 54-117 52-105 (106)
191 TIGR01302 IMP_dehydrog inosine 97.7 0.00013 2.8E-09 63.0 7.0 58 53-119 142-200 (450)
192 COG4109 Predicted transcriptio 97.7 0.00017 3.8E-09 59.0 7.1 61 51-120 246-306 (432)
193 COG2905 Predicted signal-trans 97.6 0.00019 4E-09 62.1 6.7 58 52-119 212-269 (610)
194 TIGR00393 kpsF KpsF/GutQ famil 97.5 0.00022 4.7E-09 57.2 6.3 50 53-111 219-268 (268)
195 COG2239 MgtE Mg/Co/Ni transpor 97.4 0.00036 7.9E-09 59.8 6.0 59 52-119 194-252 (451)
196 TIGR01186 proV glycine betaine 97.3 0.00092 2E-08 56.1 7.4 56 55-120 303-358 (363)
197 COG4175 ProV ABC-type proline/ 97.2 0.0011 2.4E-08 54.0 6.0 110 53-188 273-384 (386)
198 COG4535 CorC Putative Mg2+ and 97.2 7.7E-05 1.7E-09 57.8 -0.6 97 78-190 32-130 (293)
199 KOG0476 Cl- channel CLC-2 and 97.1 0.0026 5.6E-08 57.0 8.2 62 51-119 585-646 (931)
200 PRK10070 glycine betaine trans 97.0 0.0033 7.2E-08 53.5 7.8 59 55-123 338-396 (400)
201 KOG0474 Cl- channel CLC-7 and 95.7 0.016 3.6E-07 51.1 4.6 55 54-117 690-744 (762)
202 KOG2550 IMP dehydrogenase/GMP 95.5 0.09 2E-06 44.3 8.2 57 52-117 169-225 (503)
203 KOG2118 Predicted membrane pro 95.1 0.029 6.4E-07 49.0 4.3 130 51-190 201-331 (498)
204 TIGR03415 ABC_choXWV_ATP choli 94.4 0.12 2.6E-06 43.9 6.2 46 71-120 335-380 (382)
205 KOG0475 Cl- channel CLC-3 and 94.1 0.22 4.7E-06 44.2 7.2 57 52-118 637-693 (696)
206 COG1125 OpuBA ABC-type proline 93.5 0.5 1.1E-05 37.8 7.7 84 102-185 210-308 (309)
207 COG1125 OpuBA ABC-type proline 89.8 0.76 1.6E-05 36.9 4.9 62 51-117 246-307 (309)
208 COG4175 ProV ABC-type proline/ 88.4 1.4 3E-05 36.5 5.6 47 71-120 337-383 (386)
209 KOG0476 Cl- channel CLC-2 and 86.2 1.6 3.4E-05 40.0 5.2 61 128-190 587-650 (931)
210 PRK11388 DNA-binding transcrip 75.9 18 0.00038 32.9 8.3 111 54-178 41-162 (638)
211 COG2216 KdpB High-affinity K+ 58.6 26 0.00056 31.2 5.4 38 148-185 413-450 (681)
212 PF14044 NETI: NETI protein 57.0 16 0.00034 22.0 2.7 23 143-167 3-25 (57)
213 PF05198 IF3_N: Translation in 51.1 51 0.0011 21.0 4.7 27 92-120 12-38 (76)
214 COG2216 KdpB High-affinity K+ 46.5 28 0.00061 31.0 3.7 38 77-117 412-449 (681)
215 KOG1432 Predicted DNA repair e 44.9 40 0.00087 28.3 4.2 46 142-187 115-160 (379)
216 PF12282 H_kinase_N: Signal tr 39.4 35 0.00075 24.7 2.9 19 162-180 106-124 (145)
217 cd02958 UAS UAS family; UAS is 39.1 90 0.002 21.0 4.9 63 48-119 37-107 (114)
218 PF14827 Cache_3: Sensory doma 36.3 41 0.00089 23.0 2.8 18 93-112 92-109 (116)
219 KOG2599 Pyridoxal/pyridoxine/p 35.6 2.1E+02 0.0047 23.3 6.9 84 78-169 97-188 (308)
220 smart00481 POLIIIAc DNA polyme 31.1 82 0.0018 18.9 3.3 38 144-181 11-48 (67)
221 PF13185 GAF_2: GAF domain; PD 29.8 67 0.0015 22.0 3.1 42 140-181 78-122 (148)
222 cd06404 PB1_aPKC PB1 domain is 29.4 71 0.0015 20.9 2.8 28 69-96 50-77 (83)
223 cd06259 YdcF-like YdcF-like. Y 28.6 1.7E+02 0.0036 20.7 5.0 40 79-121 22-61 (150)
224 COG1956 GAF domain-containing 28.0 69 0.0015 23.8 2.8 19 164-182 118-136 (163)
225 PF04459 DUF512: Protein of un 26.9 81 0.0018 24.4 3.2 27 162-188 127-158 (204)
226 PF10623 PilI: Plasmid conjuga 26.9 1.2E+02 0.0026 19.5 3.4 35 140-174 21-55 (83)
227 CHL00199 infC translation init 26.0 1.3E+02 0.0028 22.8 4.0 37 78-115 40-76 (182)
228 PF02743 Cache_1: Cache domain 25.3 1E+02 0.0022 19.2 3.1 15 164-178 18-33 (81)
229 PF00944 Peptidase_S3: Alphavi 25.2 59 0.0013 23.4 2.0 15 163-177 108-123 (158)
230 TIGR02200 GlrX_actino Glutared 24.5 1.7E+02 0.0036 17.5 4.8 27 161-187 48-76 (77)
231 PF03948 Ribosomal_L9_C: Ribos 23.8 88 0.0019 20.4 2.5 22 101-122 23-44 (87)
232 COG0461 PyrE Orotate phosphori 23.1 3.6E+02 0.0077 20.8 7.1 45 145-189 123-182 (201)
233 PRK00028 infC translation init 21.6 1.5E+02 0.0033 22.3 3.7 39 77-116 34-72 (177)
234 cd06396 PB1_NBR1 The PB1 domai 21.3 1.3E+02 0.0027 19.6 2.8 29 133-161 43-71 (81)
235 PF05651 Diacid_rec: Putative 20.8 3.2E+02 0.007 19.5 5.4 81 83-179 9-89 (135)
236 TIGR03278 methan_mark_10 putat 20.7 5.5E+02 0.012 22.1 9.1 87 92-197 306-399 (404)
237 PF13365 Trypsin_2: Trypsin-li 20.1 71 0.0015 21.2 1.6 18 90-109 103-120 (120)
No 1
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.83 E-value=9.6e-20 Score=140.14 Aligned_cols=123 Identities=24% Similarity=0.457 Sum_probs=111.3
Q ss_pred cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK 130 (205)
Q Consensus 51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~ 130 (205)
....+|+++|.++ +.++.+++|+.+++++|.+++++..||+ |++ +++|++|..|+..++ .++ ..+.+
T Consensus 169 iPk~~V~~~~s~~-------~i~v~~d~tl~eaak~f~~~~i~GaPVv--d~d-k~vGiit~~dI~~ai-a~g--~~~~k 235 (294)
T COG2524 169 IPKEKVKNLMSKK-------LITVRPDDTLREAAKLFYEKGIRGAPVV--DDD-KIVGIITLSDIAKAI-ANG--NLDAK 235 (294)
T ss_pred cCcchhhhhccCC-------ceEecCCccHHHHHHHHHHcCccCCcee--cCC-ceEEEEEHHHHHHHH-HcC--Ccccc
Confidence 4678999999997 9999999999999999999999999999 544 999999999977654 443 24789
Q ss_pred cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEee-CCeEEEEEeHHHHHHHHHh
Q 028667 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID-DKGMIGMVSIGDVVRAVVS 188 (205)
Q Consensus 131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~-~~~~vGiIt~~dil~~l~~ 188 (205)
|+++|++. +++++.|+.+.+|+++|..++++++.|+| +|+.+|+||++|++..+..
T Consensus 236 V~~~M~k~--vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 236 VSDYMRKN--VITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred HHHHhccC--CceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence 99999996 99999999999999999999999999999 5999999999999998753
No 2
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.81 E-value=2.4e-19 Score=143.45 Aligned_cols=164 Identities=26% Similarity=0.388 Sum_probs=144.0
Q ss_pred HHhhcCCCCccccccccccccccccccccc-------ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCe
Q 028667 22 RIRLVNPMLRPVVSSRFESVSSARMEEHGF-------ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGA 94 (205)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~ 94 (205)
.+...+....|.+.++|+++.-+.+.++++ +-.+|.|+|.|.++ ..++.+++++.+..++..+.++++
T Consensus 149 vi~lAne~~lPvlstsYDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~-----~~yL~~~d~v~d~~~l~~kt~~sR 223 (432)
T COG4109 149 VIKLANEKGLPVLSTSYDTFTVATMINKALSNQLIKKDIITVEDIMTPLED-----TSYLRETDTVEDWLDLVEKTGHSR 223 (432)
T ss_pred HHHhhcccCCceEEecccceeHHHHHHHHHHHhhhhhheeeHHHhcccccc-----ceeccccccHHHHHHHHHHcCCCc
Confidence 445677888899999999999888888775 34789999998755 899999999999999999999999
Q ss_pred EEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeE
Q 028667 95 LVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGM 173 (205)
Q Consensus 95 ~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~ 173 (205)
|||+ |...+++|+|+.+|+.. ..+..++..+|+++ |.++.+.+++..+.+.|.-.++..+||+++ .++
T Consensus 224 fPVv--n~~~kvvGvVt~rDv~~-------~~~~t~ieKVMtkn--p~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~l 292 (432)
T COG4109 224 FPVV--NRSMKVVGVVTMRDVLD-------KKPSTTIEKVMTKN--PITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTL 292 (432)
T ss_pred ccee--cccceEEEEEEehhhhc-------CCCCccHHHHhccC--CeeecccchHHHHHHHHHhccceeeeEEcCCceE
Confidence 9999 89999999999999875 45688999999996 999999999999999999999999999998 799
Q ss_pred EEEEeHHHHHHHHHhhhhHH--HHHHHhhh
Q 028667 174 IGMVSIGDVVRAVVSEHREE--LNRLNAFI 201 (205)
Q Consensus 174 vGiIt~~dil~~l~~~~~~~--~~~l~~~i 201 (205)
+|+||++|+++.+.....+- .+++++.|
T Consensus 293 lGiitR~dvlk~lq~~q~qpqvget~~d~I 322 (432)
T COG4109 293 LGIITRQDVLKSLQMIQRQPQVGETISDQI 322 (432)
T ss_pred EEEEEHHHHHHHHHHhccCCcccccHHHHH
Confidence 99999999999998665543 55555544
No 3
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.79 E-value=1.5e-18 Score=136.05 Aligned_cols=169 Identities=23% Similarity=0.357 Sum_probs=131.2
Q ss_pred CcchHHHHHHHhhcCCCCcccccc--cccccccccccccccccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhc
Q 028667 13 NIVKSAVLQRIRLVNPMLRPVVSS--RFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH 90 (205)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~ 90 (205)
.+.++++-..|+..+..+--.... ..-...+.+...+.+..++++|+|.++ ++++++++++.+|.++|.++
T Consensus 202 gfs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSrd-------Vvtv~~~ts~dhA~~ll~~H 274 (382)
T COG3448 202 GFSSEDLDAALQRLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSRD-------VVTVSTDTSIDHARKLLQEH 274 (382)
T ss_pred CCCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCcc-------ceecCCcCChHHHHHHHHHc
Confidence 456666766666655443111000 011112222334446789999999998 99999999999999999999
Q ss_pred CCCeEEEEecCCCCceEEEEehHHHHHHHH----HcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEE
Q 028667 91 NVGALVVVKPGEQKSVAGIITERDYLRKII----VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIP 166 (205)
Q Consensus 91 ~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~----~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~p 166 (205)
+++.+||+ |++.+++|+|+.+|+++..- +.-.......++.+|++. ..++.++++..+.+-.|.+.+.+.+|
T Consensus 275 ~ikaLPV~--d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~--v~tv~pdtpa~~lvp~lad~g~H~lp 350 (382)
T COG3448 275 RIKALPVL--DEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTP--VVTVRPDTPAVELVPRLADEGLHALP 350 (382)
T ss_pred Cccccccc--ccccceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCc--ceeecCCCcHHHHHHHhhcCCcceee
Confidence 99999999 89999999999999887321 111123466899999974 99999999999999999999999999
Q ss_pred EeeC-CeEEEEEeHHHHHHHHHhhhhH
Q 028667 167 VIDD-KGMIGMVSIGDVVRAVVSEHRE 192 (205)
Q Consensus 167 Vv~~-~~~vGiIt~~dil~~l~~~~~~ 192 (205)
|+|+ |+++||||++|++.++.+....
T Consensus 351 vld~~g~lvGIvsQtDliaal~r~~~~ 377 (382)
T COG3448 351 VLDAAGKLVGIVSQTDLIAALYRNWSQ 377 (382)
T ss_pred EEcCCCcEEEEeeHHHHHHHHHHHHHH
Confidence 9998 9999999999999999877543
No 4
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.78 E-value=2.7e-18 Score=123.12 Aligned_cols=123 Identities=25% Similarity=0.435 Sum_probs=111.0
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v 131 (205)
..++++.+|+.. ++.+.|++++.+++++|.+++++++||+ + +++++|-||.+++.+.++..........+
T Consensus 63 ~~ita~~iM~sp-------vv~v~pdDsi~~vv~lM~~~g~SQlPVi--~-~~k~VGsItE~~iv~~~le~~e~i~~~~v 132 (187)
T COG3620 63 TRITAKTIMHSP-------VVSVSPDDSISDVVNLMRDKGISQLPVI--E-EDKVVGSITENDIVRALLEGMESIRSLRV 132 (187)
T ss_pred ceEeHhhhccCC-------eeEECchhhHHHHHHHHHHcCCccCcee--e-CCeeeeeecHHHHHHHHhccccchhhhhH
Confidence 568899999986 9999999999999999999999999999 4 49999999999998888777666667889
Q ss_pred ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHh
Q 028667 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVS 188 (205)
Q Consensus 132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~ 188 (205)
.++|.. +++++++++++.-+.+++.+++. +.|+++|+++|+||+.|+++.+.+
T Consensus 133 r~vM~e--~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 133 REVMGE--PFPTVSPDESLNVISQLLEEHPA--VLVVENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred HHHhcC--CCCcCCCCCCHHHHHHHHhhCCe--EEEEeCCceEEEEeHHHHHHHHhc
Confidence 999988 49999999999999999998755 778888999999999999998764
No 5
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.77 E-value=1.1e-17 Score=138.08 Aligned_cols=122 Identities=25% Similarity=0.440 Sum_probs=107.4
Q ss_pred ccccHhHHhhh--cCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcC
Q 028667 52 ESTTISDILKA--KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST 129 (205)
Q Consensus 52 ~~~~v~d~m~~--~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~ 129 (205)
...+|+++|.+ + ++++++++++.++++.|.+++.+.+||+ +++|+++|+|+.+|+.+ +...+..+...
T Consensus 200 ~~~~V~dim~~~~~-------~~~v~~~~sl~~a~~~~~~~~~~~~vVv--d~~g~lvGivt~~Dl~~-~~~~~~~~~~~ 269 (326)
T PRK10892 200 LLLRVSDIMHTGDE-------IPHVSKTASLRDALLEITRKNLGMTVIC--DDNMKIEGIFTDGDLRR-VFDMGIDLRQA 269 (326)
T ss_pred ccCcHHHHhCCCCC-------CeEECCCCCHHHHHHHHHhcCCCeEEEE--cCCCcEEEEEecHHHHH-HHhcCCCcccC
Confidence 67789999996 4 8999999999999999998888888888 88999999999999765 44433233456
Q ss_pred ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHH
Q 028667 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185 (205)
Q Consensus 130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~ 185 (205)
+++++|++. ++++.+++++.+|++.|.+++.+++||+++|+++|+||++|+++.
T Consensus 270 ~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~dil~~ 323 (326)
T PRK10892 270 SIADVMTPG--GIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDLLRA 323 (326)
T ss_pred CHHHhcCCC--CEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHhHhc
Confidence 899999885 899999999999999999999999999999999999999999874
No 6
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.76 E-value=2.2e-17 Score=115.58 Aligned_cols=110 Identities=21% Similarity=0.394 Sum_probs=96.8
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+..+.+++++.++.+.|.+.+...+||+ |++|+++|+++.+++++.+..........++.++|... ++++++++++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~l 78 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVC--DPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRA--VVSCRPGDLL 78 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCC--CeeECCCCCH
Confidence 6789999999999999999999999999 88999999999999876554322233456899999875 8999999999
Q ss_pred HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.+|++.|.+++.+++||+++ |+++|+|+++|+++
T Consensus 79 ~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 79 HDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 99999999999999999986 89999999999875
No 7
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.76 E-value=3.1e-17 Score=114.71 Aligned_cols=110 Identities=35% Similarity=0.562 Sum_probs=97.0
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 149 (205)
++.+.+++++.++++.|.+.+.+.+||+ +++ |+++|+++.+|+++.+..........++.++|... +++++++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~ 78 (114)
T cd04630 3 VVTIDGLATVAEALQLMKEHGVSSLVVE--KRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKP--LISVSPDMD 78 (114)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCEEEEE--ECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCC--CeeECCCCC
Confidence 7899999999999999998899999999 676 89999999999887665543233346789999774 899999999
Q ss_pred HHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667 150 VLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184 (205)
Q Consensus 150 l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~ 184 (205)
+.++++.|.+++...+||+++|+++|+|+..|+++
T Consensus 79 l~~~~~~~~~~~~~~~~Vvd~~~~~Gvi~~~dl~~ 113 (114)
T cd04630 79 IKYCARLMERTNIRRAPVVENNELIGIISLTDIFL 113 (114)
T ss_pred HHHHHHHHHHcCCCEeeEeeCCEEEEEEEHHHhhc
Confidence 99999999999999999998899999999999975
No 8
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.75 E-value=2.1e-17 Score=141.46 Aligned_cols=132 Identities=19% Similarity=0.373 Sum_probs=116.1
Q ss_pred cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHh-----cCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCC
Q 028667 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ-----HNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS 125 (205)
Q Consensus 51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~-----~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~ 125 (205)
|.+.+++++|.++ +.++++++|+.++.+.|++ .+...+||+ |++++++|+|+.+|++..
T Consensus 128 ~~e~tvg~iMt~~-------~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vv--d~~~~l~GvV~l~dLl~a------- 191 (449)
T TIGR00400 128 YSDDSAGRIMTIE-------YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVT--NESKHLKGVLSIRDLILA------- 191 (449)
T ss_pred CCcchHHHhCcCc-------eEEECCCCcHHHHHHHHHhcCCCccceeEEEEE--CCCCeEEEEEEHHHHhcC-------
Confidence 7889999999986 8999999999999999975 345678999 888999999999997641
Q ss_pred CCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHHHHHHhh
Q 028667 126 SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREELNRLNAF 200 (205)
Q Consensus 126 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~~~l~~~ 200 (205)
..+.+++++|++. +.++++++++.+|++.|.+++...+||+|+ |+++|+||.+|+++.+.+...++..+....
T Consensus 192 ~~~~~v~~im~~~--~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~~ed~~~~~gv 265 (449)
T TIGR00400 192 KPEEILSSIMRSS--VFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEATEDFYMIAAV 265 (449)
T ss_pred CCCCcHHHHhCCC--CeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhhHHHHHHhcCC
Confidence 2456899999985 889999999999999999999999999997 999999999999999998888777766644
No 9
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.74 E-value=1.1e-16 Score=111.17 Aligned_cols=111 Identities=46% Similarity=0.736 Sum_probs=96.7
Q ss_pred CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (205)
Q Consensus 70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 149 (205)
++..++++.++.++.+.|.+.+.+.+||+ +++++++|+++.+++++.+..........++.++|.+. +.+++++++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~ 77 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVV--DDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRN--VITVTPDDT 77 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCC--cEEECCCCc
Confidence 37889999999999999999999999999 78899999999999887654433222245789999774 899999999
Q ss_pred HHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667 150 VLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184 (205)
Q Consensus 150 l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~ 184 (205)
+.++++.|.+.+..++||+++|+++|+|+..|+++
T Consensus 78 ~~~~l~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~ 112 (113)
T cd04623 78 VDEAMALMTERRFRHLPVVDGGKLVGIVSIGDVVK 112 (113)
T ss_pred HHHHHHHHHHcCCCEeEEEeCCEEEEEEEHHHhhc
Confidence 99999999999999999998899999999999975
No 10
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.74 E-value=8.5e-17 Score=112.10 Aligned_cols=107 Identities=21% Similarity=0.306 Sum_probs=93.5
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+.++.+++++.++.+.|.+.+.+.+||+ +++|+++|+|+..|+.+. . .......++.++|... +.++++++++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~-~--~~~~~~~~v~~~~~~~--~~~v~~~~~l 75 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVV--DEENKVLGQVTLSDLLEI-G--PNDYETLKVCEVYIVP--VPIVYCDSKV 75 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHhh-c--cccccccChhheeecC--CcEECCCCcH
Confidence 7889999999999999998889999999 888999999999997652 1 1122245789999874 8899999999
Q ss_pred HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.+|++.|.+++.+.+||+|+ |+++|+||.+|+++
T Consensus 76 ~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 76 TDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 99999999999999999987 99999999999975
No 11
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.74 E-value=6.3e-17 Score=133.17 Aligned_cols=122 Identities=20% Similarity=0.394 Sum_probs=106.6
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccc
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~ 132 (205)
..+|+++|.++.+ ++++++++++.++.+.|...+...+||+ |++|+++|+|+..|+.+.+.. + .....++.
T Consensus 196 ~~~V~~im~~~~~-----~~~v~~~~sv~~a~~~~~~~~~~~~~Vv--d~~g~~iG~vt~~dl~~~~~~-~-~~~~~~v~ 266 (321)
T PRK11543 196 LNKVHHLMRRDDA-----IPQVALTASVMDAMLELSRTGLGLVAVC--DAQQQVQGVFTDGDLRRWLVG-G-GALTTPVN 266 (321)
T ss_pred HhHHHHHhccCCC-----CcEeCCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEecHHHHHHHHhC-C-CCcCCcHH
Confidence 6899999998532 7899999999999999988888999999 889999999999997664432 2 12356799
Q ss_pred cccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHH
Q 028667 133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRA 185 (205)
Q Consensus 133 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~ 185 (205)
++|++. ++++.+++++.+|++.|.+++..++||+++ |+++|+||++|++++
T Consensus 267 ~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 267 EAMTRG--GTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred HhcCCC--CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 999885 889999999999999999999999999996 899999999999864
No 12
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.73 E-value=3e-17 Score=133.01 Aligned_cols=132 Identities=18% Similarity=0.384 Sum_probs=113.4
Q ss_pred cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCCCCCcC
Q 028667 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKST 129 (205)
Q Consensus 51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~~~~~~ 129 (205)
|.+.+|+++|.+..+ ++++++++++.++.+.+.+++++.+||+ +++ ++++|+|+.+|++..+ ..+ ....
T Consensus 64 l~~~~V~diMtpr~~-----i~~l~~~~sl~e~~~~i~~~~~sr~PV~--~~~~d~iiGiv~~kDll~~~-~~~--~~~~ 133 (292)
T PRK15094 64 IADQRVRDIMIPRSQ-----MITLKRNQTLDECLDVIIESAHSRFPVI--SEDKDHIEGILMAKDLLPFM-RSD--AEAF 133 (292)
T ss_pred cCCCEEeEEccchHH-----EEEEeCCCCHHHHHHHHHhcCCcEEEEe--cCCCCcEEEEEEHHHHHhHh-hcc--CCcC
Confidence 788999999998433 8999999999999999999999999999 555 7999999999987543 211 1234
Q ss_pred ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHHH
Q 028667 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREELN 195 (205)
Q Consensus 130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~~ 195 (205)
.+.++|++ +.++++++++.++++.|.+++.+.+||+|+ |.++|+||.+|+++.+.+...++..
T Consensus 134 ~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d 197 (292)
T PRK15094 134 SMDKVLRQ---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYD 197 (292)
T ss_pred CHHHHcCC---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccc
Confidence 58899987 679999999999999999999999999998 8999999999999999987665443
No 13
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.73 E-value=1.8e-16 Score=111.58 Aligned_cols=111 Identities=25% Similarity=0.488 Sum_probs=95.2
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+.++++++++.++++.|..++...+||+ |++|+++|+|+..++++..... ......+++++|...+++.++++++++
T Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~--d~~~~~~Givt~~dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~l 79 (118)
T cd04617 3 PVVVRENTSVYDAIVTLFLEDVGSLFVV--DEDGDLVGVVSRKDLLKASIGG-ADLQKVPVGVIMTRMPNITTTTPEESV 79 (118)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHHHHHcC-CCccCCCHHHHhCCCCCcEEECCCCcH
Confidence 7899999999999999999999999999 7889999999999987765432 223356788999741138899999999
Q ss_pred HHHHHHHHhCCCCEEEEeeC----CeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDD----KGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~----~~~vGiIt~~dil~ 184 (205)
.++++.|.+++.+++||+++ |+++|+||++|+++
T Consensus 80 ~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 80 LEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 99999999999999999986 48999999999875
No 14
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.73 E-value=4.8e-17 Score=143.41 Aligned_cols=168 Identities=14% Similarity=0.230 Sum_probs=131.8
Q ss_pred hcCCcchHHHHHHHhhcCCCCcccccccc-----------cccccc-------cccccccccccHhHHhhhcCCCCCCCc
Q 028667 10 SHGNIVKSAVLQRIRLVNPMLRPVVSSRF-----------ESVSSA-------RMEEHGFESTTISDILKAKGKGADGSW 71 (205)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~-------~~~~~~~~~~~v~d~m~~~~~~~~~~~ 71 (205)
-++|++.--+..|++.......|.+.... .+..+. ......+...+|+|+|+++ +
T Consensus 385 ~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~~~iy~~~~~~~~~~~~~~~L~~~~V~dim~~~-------~ 457 (574)
T PRK01862 385 TQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTTSMYEITLRRHQDEAERERLRTTQMRELIQPA-------Q 457 (574)
T ss_pred HccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhccccchhhHHhhCcHHHHhcCC-------C
Confidence 46788888888888766666666544420 011111 1112236789999999987 8
Q ss_pred eEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHH
Q 028667 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVL 151 (205)
Q Consensus 72 ~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~ 151 (205)
..+++++++.++.+.+.+++.+.+||+ |++++++|+|+.+|+.+.+.... ...+.++.++|++. ++++++++++.
T Consensus 458 ~~v~~~~tl~ea~~~l~~~~~~~~~Vv--D~~g~lvGiVt~~dL~~~l~~~~-~~~~~~v~dim~~~--~~~v~~d~~L~ 532 (574)
T PRK01862 458 TVVPPTASVADMTRVFLEYPVKYLYVV--DDDGRFRGAVALKDITSDLLDKR-DTTDKTAADYAHTP--FPLLTPDMPLG 532 (574)
T ss_pred ceeCCCCCHHHHHHHHHhCCCceEEEE--cCCCeEEEEEEHHHHHHHhhccc-ccccchHHHhccCC--CeeECCCCCHH
Confidence 889999999999999999999999999 88999999999999876543322 22346789999885 89999999999
Q ss_pred HHHHHHHhCCCCEEEEeeC---CeEEEEEeHHHHHHHHHhh
Q 028667 152 RAMQLMTDNRIRHIPVIDD---KGMIGMVSIGDVVRAVVSE 189 (205)
Q Consensus 152 ~a~~~~~~~~~~~~pVv~~---~~~vGiIt~~dil~~l~~~ 189 (205)
++++.|.+++.+.+||+|+ ++++|+||++|+++.+.+.
T Consensus 533 ~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~~ 573 (574)
T PRK01862 533 DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRRM 573 (574)
T ss_pred HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHhh
Confidence 9999999999999999986 3899999999999998653
No 15
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.73 E-value=1.7e-16 Score=111.93 Aligned_cols=111 Identities=22% Similarity=0.345 Sum_probs=90.5
Q ss_pred CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccc------ccccCCceEE
Q 028667 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD------IMTEENKLIT 143 (205)
Q Consensus 70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~------im~~~~~~~~ 143 (205)
++.++++++++.++.+.|.+++.+.+||+ +++|+++|+++.+|++..+..........++.+ .|.. ++.+
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv--~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 77 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIV--DENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFE--GVRT 77 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEE--CCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCC--CCeE
Confidence 48899999999999999999999999999 789999999999998864432211111122333 2222 3789
Q ss_pred EcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 144 VSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 144 v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
+++++++.++++.|.+++.+.+||+++ |+++|+||++|+++
T Consensus 78 v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 78 CSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred EcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 999999999999999999999999997 89999999999875
No 16
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.72 E-value=3e-17 Score=138.61 Aligned_cols=162 Identities=26% Similarity=0.469 Sum_probs=139.4
Q ss_pred cchHHHHHHHhhcCCCCccccccccccccc---ccccc---cccccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHH
Q 028667 14 IVKSAVLQRIRLVNPMLRPVVSSRFESVSS---ARMEE---HGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSM 87 (205)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~ 87 (205)
+.|.++|.++...++.|..++.+....+.. .+..+ ..+-..+|++++..+ ++++++..++.+|++.|
T Consensus 103 ~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~~~~eq~~~e~~~trv~~~~~~~-------~~~v~~~~~i~~aa~km 175 (610)
T COG2905 103 LLPKSVFMQLMEENPEFADFFLRSLAKRLRDIADRLAEQGESEFILTRVGEVKTLP-------AVTVSPQASIQDAARKM 175 (610)
T ss_pred ecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhcCC-------CcccCccCcHHHHHHHH
Confidence 578899999999999997777655443221 11222 225567888888886 99999999999999999
Q ss_pred HhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEE
Q 028667 88 TQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPV 167 (205)
Q Consensus 88 ~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV 167 (205)
.+.+.+.+.++ ++++...|+||.+|+..+++..+.. ...+|+.+|+. ++.+++..+.+.+|+-.|.+.++.++||
T Consensus 176 ~~~gv~s~v~l--~~~~~~~GIvT~~dl~~~v~~~g~~-~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~V 250 (610)
T COG2905 176 KDEGVSSLVVL--DDSGPLLGIVTRKDLRSRVIADGRS-KTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPV 250 (610)
T ss_pred HhcCCCeEEEE--cCCCCccceeehHHHHHHHHhcCCC-cccchhhhhcc--CceeecCcchHHHHHHHHHHhCCceeee
Confidence 99999999999 8899999999999999999887754 57899999998 4999999999999999999999999999
Q ss_pred eeCCeEEEEEeHHHHHHHHH
Q 028667 168 IDDKGMIGMVSIGDVVRAVV 187 (205)
Q Consensus 168 v~~~~~vGiIt~~dil~~l~ 187 (205)
+++|+++|+||.+||++...
T Consensus 251 ~e~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 251 TEDGQPLGILTLTDILRLFS 270 (610)
T ss_pred ecCCeeeEEeeHHHHHHhhC
Confidence 99999999999999999877
No 17
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.71 E-value=4.6e-16 Score=108.13 Aligned_cols=109 Identities=28% Similarity=0.508 Sum_probs=92.6
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
++.+.+++++.++++.|.+++...++|. + +|+++|+++.+++++.+...+......++.++|... +.++++++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~l 77 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDLGSLVVM--E-RGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPE--PIVASPDDSI 77 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeEEEe--e-CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCC--CeEECCCCCH
Confidence 7889999999999999987777777766 4 589999999999877654322222346799999874 8899999999
Q ss_pred HHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~ 184 (205)
.++++.|.+++...+||+++|+++|+||.+|+++
T Consensus 78 ~~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 78 DEVRRLMVERHLRYLPVLDGGTLLGVISFHDVAK 111 (112)
T ss_pred HHHHHHHHHcCCCeeeEEECCEEEEEEEHHHhhc
Confidence 9999999999999999999999999999999975
No 18
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.71 E-value=4.4e-16 Score=112.53 Aligned_cols=111 Identities=30% Similarity=0.499 Sum_probs=95.5
Q ss_pred CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCC----------------------C
Q 028667 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSS----------------------K 127 (205)
Q Consensus 70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~----------------------~ 127 (205)
+++++.+++++.++++.|.+.+.+.+||+ |++|+++|+++..++++.+....... .
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVV--DDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV 79 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEE--CCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence 37889999999999999999999999999 88899999999999887543211110 1
Q ss_pred cCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667 128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184 (205)
Q Consensus 128 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~ 184 (205)
..++.++|.+. +..+.+++++.++++.|.+.+.+++||+++|+++|+|+..|+++
T Consensus 80 ~~~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTEE--IITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCCC--CeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHhh
Confidence 34789999874 88999999999999999999999999999999999999999976
No 19
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.70 E-value=1.1e-16 Score=135.36 Aligned_cols=171 Identities=19% Similarity=0.362 Sum_probs=139.6
Q ss_pred cCCcchHHHHHHHhhcCCCCccccccccccccccccccc-ccccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHh
Q 028667 11 HGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEH-GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ 89 (205)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~ 89 (205)
.+++.+++....+.+........+.+............. .|.+.+++.+|... ++.+.++.|+.+++..+++
T Consensus 88 ie~m~~Dd~~~ll~elp~~~~~~lL~~l~~~~r~~v~~~l~y~e~taG~~Mt~e-------~v~l~~~~Tv~~al~~ir~ 160 (451)
T COG2239 88 IEELDIDDAADLLDELPDEVRDELLSLLDPEERARVRQLLSYPEDTAGRIMTTE-------FVTLPEDVTVDEALDRIRE 160 (451)
T ss_pred HHhcCcHHHHHHHHhCCHHHHHHHHHhCCHHHHHHHHHhcCCChhhhhccceee-------eEEeccCcCHHHHHHHHHH
Confidence 344445555555555555554444444443333333222 37889999999997 9999999999999999985
Q ss_pred c-----CCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCE
Q 028667 90 H-----NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRH 164 (205)
Q Consensus 90 ~-----~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~ 164 (205)
. ....++|+ |+++++.|+++.++++. ..++.++.++|.+. +..+.++++.+++.++|++++.-.
T Consensus 161 ~~~~~e~~~~lyVv--D~~~~L~Gvvsl~~Ll~-------a~~~~~i~~im~~~--~~~V~~~~dqeevA~~~~~ydl~a 229 (451)
T COG2239 161 RAEDAETIYYLYVV--DEKGKLLGVVSLRDLLT-------AEPDELLKDLMEDD--VVSVLADDDQEEVARLFEKYDLLA 229 (451)
T ss_pred hcccccccceEEEE--CCccceEEEeeHHHHhc-------CCcHhHHHHHhccc--ceeecccCCHHHHHHHHHHhCCee
Confidence 3 46889999 89999999999999875 35678999999996 999999999999999999999999
Q ss_pred EEEeeC-CeEEEEEeHHHHHHHHHhhhhHHHHHHHh
Q 028667 165 IPVIDD-KGMIGMVSIGDVVRAVVSEHREELNRLNA 199 (205)
Q Consensus 165 ~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~~~l~~ 199 (205)
+||+|+ ++++|+||..|++..+.++..++..++.+
T Consensus 230 ~PVVd~~~~LiG~itiDDiidvi~eEa~eDi~~~~G 265 (451)
T COG2239 230 VPVVDEDNRLIGIITIDDIIDVIEEEATEDILRMAG 265 (451)
T ss_pred cceECCCCceeeeeeHHHHHHHHHHHHHHHHHHhcC
Confidence 999998 89999999999999999999999999887
No 20
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.70 E-value=3.4e-16 Score=109.03 Aligned_cols=110 Identities=31% Similarity=0.501 Sum_probs=96.1
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC-CCCcCccccccccCCceEEEcCCCc
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR-SSKSTKVGDIMTEENKLITVSPDTK 149 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~-~~~~~~v~~im~~~~~~~~v~~~~~ 149 (205)
+..++++.++.++.+.|.+.+.+.+||+ +++++++|+|+..++++.+..... .....++.++|.+. +..+.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~ 78 (114)
T cd04629 3 PVTFTPDMSVTEAVEKLLKSKISGGPVV--DDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTE--VLTVSPDDS 78 (114)
T ss_pred CeEeCCCCCHHHHHHHHHhcCCCCccEE--CCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccC--ceEECCCCc
Confidence 7889999999999999988888999999 888999999999998876543221 12356789999874 889999999
Q ss_pred HHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667 150 VLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184 (205)
Q Consensus 150 l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~ 184 (205)
+.++++.|.+++.+++||+++|+++|+||.+|+++
T Consensus 79 l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~ 113 (114)
T cd04629 79 IVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVLR 113 (114)
T ss_pred HHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHhc
Confidence 99999999999999999999999999999999975
No 21
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.70 E-value=7e-16 Score=107.52 Aligned_cols=108 Identities=23% Similarity=0.474 Sum_probs=94.5
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+..++++.++.++++.|.+.+.+.+||+ +++|+++|+++.+|+++.+... .....++.++|.+. +.++++++++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~~~~--~~~~~~v~~~~~~~--~~~v~~~~~l 77 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVV--DENGRLLGTVTDGDIRRALLKG--LSLDDPVSEVMNRN--PITAKVGSSR 77 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEE--CCCCCEEEEEEcHHHHHHHhcC--CCcCCCHHHhhcCC--CEEEcCCCCH
Confidence 6789999999999999998899999999 8889999999999987654422 12345789999874 8899999999
Q ss_pred HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.++++.|.+++.+++||+++ |+++|+||.+|+++
T Consensus 78 ~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 78 EEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 99999999999999999986 89999999999875
No 22
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.70 E-value=4.8e-16 Score=109.96 Aligned_cols=111 Identities=33% Similarity=0.598 Sum_probs=95.2
Q ss_pred CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC---------CCCcCccccccccCCc
Q 028667 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR---------SSKSTKVGDIMTEENK 140 (205)
Q Consensus 70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~---------~~~~~~v~~im~~~~~ 140 (205)
++.++.++.++.++.+.|.+.+.+.+||+ +++|+++|+++.++++..+..... .....++.++|...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 78 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVV--DGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPP-- 78 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEE--CCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCC--
Confidence 38899999999999999999999999999 778999999999998765432211 01244689999875
Q ss_pred eEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 141 LITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 141 ~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
+.++++++++.++++.|..++.+.+||+++ |+++|+|+..|+++
T Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 79 VVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred CeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 999999999999999999999999999995 99999999999975
No 23
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.70 E-value=8.2e-16 Score=107.51 Aligned_cols=109 Identities=25% Similarity=0.434 Sum_probs=94.5
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+..+.+++++.++.+.|.+.+.+.+||+ +++|+++|+++.+|++..+.. .......++.++|... +.++.+++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~~~~-~~~~~~~~~~~~~~~~--~~~v~~~~~l 77 (115)
T cd04593 3 PPVLSATTPLREAAEQLIESKHGSALVV--DRDGGVVGIITLPDLLRALEA-DEAGEPSAVDEVATPP--LLTVHPDEPL 77 (115)
T ss_pred CcEeCCCCCHHHHHHHHHhCCCcEEEEE--cCCCCEEEEEEHHHHHHHHhc-ccccccccHHHhccCC--ceEECCCCCH
Confidence 7789999999999999999999999999 888999999999998765442 2222344588898874 8999999999
Q ss_pred HHHHHHHHhCCCCEEEEeeC---CeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDD---KGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~---~~~vGiIt~~dil~ 184 (205)
.++++.|.+++.+.+||+++ |+++|+||.+|+++
T Consensus 78 ~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 78 AHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred HHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 99999999999999999985 59999999999975
No 24
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.69 E-value=7.2e-16 Score=106.98 Aligned_cols=107 Identities=22% Similarity=0.394 Sum_probs=94.6
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+.++.++.++.++++.|.+.+...+||+ +++|+++|+|+..++++.+... ....++.++|... +.++++++++
T Consensus 3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~---~~~~~v~~~~~~~--~~~i~~~~~~ 75 (111)
T cd04639 3 FETLSPADTLDDAADALLATTQHEFPVV--DGDGHLVGLLTRDDLIRALAEG---GPDAPVRGVMRRD--FPTVSPSATL 75 (111)
T ss_pred ceEcCCCCcHHHHHHHHHHcCCCcceEE--CCCCcEEEEeeHHHHHHHHHhc---CCCCcHHHHhcCC--CcEECCCCcH
Confidence 7889999999999999988889999999 7789999999999987655432 1345789999774 8999999999
Q ss_pred HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.++++.|.+++..++||+++ |+++|++|+.|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 76 DAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999999997 99999999999875
No 25
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.69 E-value=2e-16 Score=133.81 Aligned_cols=137 Identities=14% Similarity=0.292 Sum_probs=116.0
Q ss_pred ccccccc--cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHH
Q 028667 44 ARMEEHG--FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (205)
Q Consensus 44 ~~~~~~~--~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~ 121 (205)
..+..+. |.+.+|+|+|.|..+ +++++.++++.++.+.+.+++++++||++ ++.++++|+|+.+|++..+.
T Consensus 179 ~~~i~~vl~l~~~~v~diMtpr~~-----v~~l~~~~~~~e~~~~~~~~~~sR~PV~~-~~~d~ivGiv~~kDll~~~~- 251 (408)
T TIGR03520 179 QKILQGIVSFGNTDTKQVMRPRLD-----IFALDIETSFSEIIPKIIENGYSRIPVYK-ETIDNITGVLYIKDLLPHLN- 251 (408)
T ss_pred HHHHHHHhccCCCEeeeeCCchHh-----EEEEECCCCHHHHHHHHHhCCCCEEEEEc-CCCCceEEEEEHHHHHhHhc-
Confidence 3444443 689999999998544 89999999999999999999999999994 33478999999999876421
Q ss_pred cCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHH
Q 028667 122 QGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREEL 194 (205)
Q Consensus 122 ~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~ 194 (205)
. ...++.++|++ +.++++++++.++++.|.+++.+.++|+|+ |.++|+||.+|+++.+.+...++.
T Consensus 252 ~----~~~~l~~~~~~---~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~ 318 (408)
T TIGR03520 252 K----KNFDWQSLLRE---PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEF 318 (408)
T ss_pred c----CCCCHHHHcCC---CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcC
Confidence 1 23457889887 889999999999999999999999999998 999999999999999987765443
No 26
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.69 E-value=4.8e-16 Score=108.52 Aligned_cols=109 Identities=23% Similarity=0.338 Sum_probs=92.7
Q ss_pred ceEeCCCchHHHHHHHHHhcC-CCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667 71 WLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~-~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 149 (205)
+.++++++++.++.+.|.+++ .+.+||+ |++|+++|+|+.+|++...... ....++.++|.+..+++++.++++
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~~~~~---~~~~~v~~~~~~~~~~~~v~~~~~ 77 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQRRFVVV--DNEGRYVGIISLADLRAIPTSQ---WAQTTVIQVMTPAAKLVTVLSEES 77 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCceeEEEE--cCCCcEEEEEEHHHHHHHHHhh---ccccchhhhhcccccceEECCCCc
Confidence 788999999999999997664 8899999 7889999999999987654321 124578899975323678999999
Q ss_pred HHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 150 VLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 150 l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
+.+|++.|.+++.+++||+++ |+++|+|+.+|+++
T Consensus 78 l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 78 LAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 999999999999999999997 89999999999874
No 27
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.69 E-value=1.2e-15 Score=105.91 Aligned_cols=108 Identities=23% Similarity=0.422 Sum_probs=94.0
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+..++++.++.++++.|.+.+.+.+||+ +++|+++|+++.++++.... .. .....++.++|.+. +.++.+++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~~-~~-~~~~~~v~~~~~~~--~~~v~~~~~l 76 (111)
T cd04626 3 FPTIDEDASIREALHEMLKYNTNEIIVK--DNEEKLKGVVTFTDILDLDL-FE-SFLEKKVFNIVSQD--VFYVNEEDTI 76 (111)
T ss_pred ceEECCCccHHHHHHHHHHhCCCeEEEE--cCCCCEEEEEehHHhHHHHh-hc-ccccCcHHHHhcCC--cEEEcCCCcH
Confidence 7889999999999999999999999999 78899999999999875432 11 11245788899874 8899999999
Q ss_pred HHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~ 184 (205)
.++++.|.+++.+.+||+++|+++|+||..|++.
T Consensus 77 ~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~~ 110 (111)
T cd04626 77 DEALDIMREKQIGRLPVVDDNKLIGVVRTKDILD 110 (111)
T ss_pred HHHHHHHHHcCCCeeeEeECCEEEEEEEhHHhcc
Confidence 9999999999999999999999999999999874
No 28
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.69 E-value=1.2e-15 Score=106.24 Aligned_cols=109 Identities=30% Similarity=0.443 Sum_probs=94.9
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+..+.+++++.++++.|.+.+.+.+||+ |++++++|+++..++++.+... ......++.++|.+. +.++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv--d~~~~~~G~v~~~dl~~~~~~~-~~~~~~~i~~~~~~~--~~~v~~~~~l 77 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVV--DDKKRLVGIITRYDVLSYALES-EELKDAKVREVMNSP--VITIDANDSI 77 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEE--cCCCCEEEEEEHHHHHHhhhhh-hhhcCCcHHHhccCC--ceEECCCCcH
Confidence 6789999999999999999999999999 7889999999999987644332 223456789999874 8999999999
Q ss_pred HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.++++.|.+++.+.+||+++ |+++|+++..|+++
T Consensus 78 ~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 78 AKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999987 89999999999874
No 29
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.69 E-value=1.1e-15 Score=109.74 Aligned_cols=111 Identities=32% Similarity=0.547 Sum_probs=94.8
Q ss_pred CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCC-------------------cCc
Q 028667 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK-------------------STK 130 (205)
Q Consensus 70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~-------------------~~~ 130 (205)
++.++.++.++.++.+.|.+.+.+.+||+ |++|+++|+++..++++.+........ ..+
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVV--DNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK 79 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceE--CCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence 37889999999999999998889999999 788999999999998765543221110 127
Q ss_pred cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184 (205)
Q Consensus 131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~ 184 (205)
+.++|.+. +..+++++++.++++.|.+.+.+.+||+++|+++|++|..|+++
T Consensus 80 v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~~ 131 (132)
T cd04636 80 VEEIMTKK--VITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDIIR 131 (132)
T ss_pred HHHhccCC--ceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhhc
Confidence 88888774 89999999999999999999999999999999999999999985
No 30
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.68 E-value=9.9e-16 Score=105.99 Aligned_cols=104 Identities=34% Similarity=0.470 Sum_probs=93.3
Q ss_pred CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (205)
Q Consensus 70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 149 (205)
++.++++++++.++.+.|.+.+.+.+||+ +++|+++|+++..+++.. ....++.++|... +.+++++++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~-------~~~~~v~~~~~~~--~~~v~~~~~ 71 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVV--DEKNKVVGIVTSKDVAGK-------DPDTTIEKVMTKN--PITVNPKTS 71 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEE--CCCCeEEEEecHHHHhcc-------cccccHHHHhcCC--CeEECCCCC
Confidence 38899999999999999999888999999 889999999999997642 2345799999874 899999999
Q ss_pred HHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 150 VLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 150 l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
+.++++.|..++...+||+++ |+++|+++..|+++
T Consensus 72 l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 72 VASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 999999999999999999986 89999999999875
No 31
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.68 E-value=5.3e-16 Score=132.92 Aligned_cols=121 Identities=27% Similarity=0.417 Sum_probs=107.8
Q ss_pred cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK 130 (205)
Q Consensus 51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~ 130 (205)
++..++.++|.++ ++++++++++.++++.|.+++.+.+||+ |++++++|+|+.+|+.. .....+
T Consensus 86 l~~VKv~~iMi~~-------pvtv~~d~tv~eA~~~m~~~~~s~l~VV--D~~gklvGIVT~rDL~~-------~~~~~~ 149 (479)
T PRK07807 86 VAWVKSRDLVFDT-------PVTLSPDDTVGDALALLPKRAHGAVVVV--DEEGRPVGVVTEADCAG-------VDRFTQ 149 (479)
T ss_pred HhhcccccccccC-------CeEECCCCCHHHHHHHHHhcCCceEEEE--CCCCeEEEEEeHHHHhc-------CccCCC
Confidence 4678888999876 9999999999999999999999999999 88999999999999642 113457
Q ss_pred cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE 189 (205)
Q Consensus 131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~ 189 (205)
+.++|++. ++++++++++.+|++.|.+++.+.+||+|+ |+++|+||++||++.....
T Consensus 150 V~diMt~~--~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 150 VRDVMSTD--LVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred HHHhccCC--ceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence 99999985 999999999999999999999999999996 9999999999999976644
No 32
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.68 E-value=8.3e-16 Score=107.40 Aligned_cols=108 Identities=22% Similarity=0.377 Sum_probs=91.9
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCC----cCccccccccCCceEEEcC
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK----STKVGDIMTEENKLITVSP 146 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~----~~~v~~im~~~~~~~~v~~ 146 (205)
++++++++++.++.+.|.+.+.+.+||+ |++|+++|+++.+++++.+........ ..++.++|.+. +.++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~ 78 (116)
T cd04643 3 VAYVQDTNTLRHALLVLTKHGYSAIPVL--DKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTD--VPVIID 78 (116)
T ss_pred cEEECCCCcHHHHHHHHHHCCCceeeeE--CCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCC--CceecC
Confidence 8899999999999999999999999999 888999999999998765432211111 45788999875 899999
Q ss_pred CCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 147 DTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 147 ~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
++++.++++.|.+.+ .+||+++ |+++|+||..|+++
T Consensus 79 ~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 79 DADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 999999999998865 5899986 89999999999875
No 33
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.68 E-value=1.9e-15 Score=104.96 Aligned_cols=108 Identities=31% Similarity=0.458 Sum_probs=94.3
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
++.++++.++.++.+.|.+.+...++|+ ++ |+++|+++..+++.... .+......++.++|.+. +..+++++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~~~-~~~~~~~~~i~~~~~~~--~~~v~~~~~l 76 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGADALLVR--DG-DPRLGIVTRTDLLDAVL-LDGLPSSTPVGEIATFP--LITVDPDDFL 76 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEe--cC-CeEEEEEEHHHHHHHHH-cCCCCCCCCHHHHhCCC--cEEECCCCcH
Confidence 7789999999999999998888999999 67 89999999999876443 22223456789999874 8999999999
Q ss_pred HHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~ 184 (205)
.++++.|.+++.+.+||+++|+++|+||..|+++
T Consensus 77 ~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~~ 110 (111)
T cd04589 77 FNALLLMTRHRIHRVVVREGGEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHHHHHHhCccEEEEeeCCEEEEEEEhHHhhc
Confidence 9999999999999999999999999999999975
No 34
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.68 E-value=5.9e-16 Score=105.77 Aligned_cols=92 Identities=17% Similarity=0.366 Sum_probs=82.9
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCC-CCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~-~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 149 (205)
++++++++++.++.+.|.+++.+.+||+ ++ +|+++|+|+..|+.+.+. +.+++++++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~~~~~~Givt~~Dl~~~~~--------------------~~~v~~~~~ 60 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLW--DSRKQQFVGMLTITDFILILR--------------------LVSIHPERS 60 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEE--eCCCCEEEEEEEHHHHhhhee--------------------eEEeCCCCc
Confidence 7899999999999999999999999999 66 489999999999765210 578999999
Q ss_pred HHHHHHHHHhCCCCEEEEeeC--CeEEEEEeHHHHHH
Q 028667 150 VLRAMQLMTDNRIRHIPVIDD--KGMIGMVSIGDVVR 184 (205)
Q Consensus 150 l~~a~~~~~~~~~~~~pVv~~--~~~vGiIt~~dil~ 184 (205)
+.+|++.|.+++.+++||+++ |+++|+||.+|++.
T Consensus 61 l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 61 LFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 999999999999999999984 69999999999975
No 35
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.68 E-value=9.3e-16 Score=106.67 Aligned_cols=109 Identities=28% Similarity=0.501 Sum_probs=94.2
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
++.+.++.++.++.+.|.+++.+.+||+ ++ ++++|+|+..+++..+...+......++.++|.+. +.++++++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~--~~~v~~~~~l 77 (113)
T cd04587 3 PATVSPTTTVQEAAKLMREKRVSCVLVM--DG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPN--PVCATSDTPV 77 (113)
T ss_pred CeEeCCCCCHHHHHHHHHHcCCCeEEEE--EC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCC--CeEEcCCCCH
Confidence 7889999999999999998888999999 66 99999999999876555433222226789999874 8899999999
Q ss_pred HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.++++.|.+++.+++||+++ |+++|+|+..|++.
T Consensus 78 ~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 78 LEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred HHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 99999999999999999987 89999999999875
No 36
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.68 E-value=1.9e-15 Score=104.85 Aligned_cols=108 Identities=36% Similarity=0.681 Sum_probs=94.3
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+.+++++.++.++.+.|.+.+.+.+||+ ++ ++++|+++..+++..+...+ .....++.++|... ++.+++++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~--~~-~~~~G~v~~~~l~~~~~~~~-~~~~~~i~~~~~~~--~~~v~~~~~l 76 (111)
T cd04800 3 PVTCSPDTTIREAARLMTEHRVSSLLVV--DD-GRLVGIVTDRDLRNRVVAEG-LDPDTPVSEVMTAP--PITIPPDATV 76 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEE--EC-CEEEEEEEhHHHHHHHhccC-CCccCCHHHHhCCC--CeEECCCCcH
Confidence 7889999999999999998888999999 66 99999999999876544332 22346788999774 8999999999
Q ss_pred HHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~ 184 (205)
.++++.|.+++.+++||+++|+++|+++.+|+++
T Consensus 77 ~~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~~ 110 (111)
T cd04800 77 FEALLLMLERGIHHLPVVDDGRLVGVISATDLLR 110 (111)
T ss_pred HHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhc
Confidence 9999999999999999999899999999999975
No 37
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.68 E-value=2.4e-15 Score=104.47 Aligned_cols=109 Identities=36% Similarity=0.676 Sum_probs=94.2
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+..+.++.++.++.+.|.+.+.+.+||+ +++ +++|+++..++++.+..........++.++|.+. +..+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~l 77 (112)
T cd04802 3 VITVDPDTTVYEAANIMTENNIGRLIVV--DNE-KPVGIITERDLVKKVVSRNLKPREVPVGEVMSTP--LITIDPNASL 77 (112)
T ss_pred cEEECCCCCHHHHHHHHHHCCCCEEEEE--ECC-EEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCC--cEEECCCCCH
Confidence 7889999999999999998889999999 544 9999999999887655432222356789999874 8899999999
Q ss_pred HHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~ 184 (205)
.++++.|.+++.+.+||+++++++|+|+++|+++
T Consensus 78 ~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~~ 111 (112)
T cd04802 78 NEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhhc
Confidence 9999999999999999999889999999999874
No 38
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.68 E-value=2e-15 Score=104.59 Aligned_cols=107 Identities=29% Similarity=0.461 Sum_probs=94.0
Q ss_pred CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (205)
Q Consensus 70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 149 (205)
+++.++++.++.++.+.|.+.+.+.+||+ ++ |+++|+++..++++.+ ..+ ....++.++|.+. +.+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~dl~~~~-~~~--~~~~~~~~~~~~~--~~~v~~~~~ 74 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVV--EG-GRVVGIISRRDVEKAL-RHG--LGHAPVKDYMSTD--VVTVPPDTP 74 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEe--eC-CEEEEEEEHHHHHHHH-hcc--cccCcHHHHhcCC--CEEECCCCc
Confidence 37899999999999999998888999999 66 9999999999976643 222 2456889999874 899999999
Q ss_pred HHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667 150 VLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184 (205)
Q Consensus 150 l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~ 184 (205)
+.++++.|.+++.+++||+++|+++|+||..|+++
T Consensus 75 l~~~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~~ 109 (110)
T cd04595 75 LSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHHHHHHcCCCeeEEEeCCEEEEEEEhHHhhc
Confidence 99999999999999999999999999999999874
No 39
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.68 E-value=1.2e-15 Score=107.57 Aligned_cols=110 Identities=31% Similarity=0.576 Sum_probs=95.1
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCC--------CCcCccccccccCCceE
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS--------SKSTKVGDIMTEENKLI 142 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~--------~~~~~v~~im~~~~~~~ 142 (205)
+.++.+++++.++.+.|.+.+.+.+||+ +++|+++|+++..++++.+...... ....++.++|... +.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 78 (122)
T cd04803 3 VVTLSEDDSLADAEELMREHRIRHLPVV--NEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTD--VL 78 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCcccccEE--CCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCC--Ce
Confidence 7889999999999999999999999999 7789999999999987654322111 1345788999774 89
Q ss_pred EEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 143 TVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 143 ~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.+++++++.++++.|.+.+.+++||+++ |+++|+||..|+++
T Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 79 TVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred EeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 9999999999999999999999999998 89999999999975
No 40
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.68 E-value=1.2e-15 Score=108.00 Aligned_cols=110 Identities=22% Similarity=0.400 Sum_probs=89.7
Q ss_pred CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCCCCC--c------CccccccccCCc
Q 028667 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSK--S------TKVGDIMTEENK 140 (205)
Q Consensus 70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~~~~--~------~~v~~im~~~~~ 140 (205)
++..+.+++++.++++.|.+.+...+||+ |++ |+++|+|+..|+++.+........ . ....++|.. +
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 77 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVT--EEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTS--D 77 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEE--eCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcC--C
Confidence 47889999999999999998889999999 776 899999999998775433211100 0 112245655 4
Q ss_pred eEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHH
Q 028667 141 LITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVV 183 (205)
Q Consensus 141 ~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil 183 (205)
+.++++++++.+|++.|.+++.+++||+++ |+++|+||.+|+-
T Consensus 78 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 78 VISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 899999999999999999999999999987 8999999999874
No 41
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.68 E-value=4e-16 Score=111.11 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=94.6
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+.++.++.++.++++.|.+++.+.+||+ +++|+++|+++.+++++.+.... .....+++++|.+. +.++++++++
T Consensus 4 ~~~v~~~~~v~~a~~~m~~~~~~~~~Vv--d~~~~~~Gii~~~dl~~~~~~~~-~~~~~~v~~im~~~--~~~v~~~~~~ 78 (124)
T cd04608 4 PVTVLPTVTCAEAIEILKEKGFDQLPVV--DESGKILGMVTLGNLLSSLSSGK-VQPSDPVSKALYKQ--FKRVNKNDTL 78 (124)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHHHHHHhc-cCCCCcHHHHhhcc--ceecCCCCCH
Confidence 7899999999999999999999999999 88899999999999887655433 23567999999985 9999999999
Q ss_pred HHHHHHHHhC---------CCCEEEEeeC-CeEEEEEeHHHHHHHH
Q 028667 151 LRAMQLMTDN---------RIRHIPVIDD-KGMIGMVSIGDVVRAV 186 (205)
Q Consensus 151 ~~a~~~~~~~---------~~~~~pVv~~-~~~vGiIt~~dil~~l 186 (205)
.+++++|... +...+||+++ |+++|+||..|+++++
T Consensus 79 ~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 79 GKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred HHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence 9999965432 4667788876 8999999999999763
No 42
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.68 E-value=1.6e-15 Score=105.40 Aligned_cols=109 Identities=39% Similarity=0.713 Sum_probs=93.7
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+.++.++.++.++.+.|.+++.+.+||+ ++ |+++|+++..+++......+......++.++|... +.++++++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~ 77 (113)
T cd04622 3 VVTVSPDDTIREAARLMREHDVGALPVC--EN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRG--VVTVTEDDDV 77 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCC--ccEECCCCCH
Confidence 7889999999999999999899999999 66 99999999999874444333222233589999875 8899999999
Q ss_pred HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.++++.|...+.+++||+++ |+++|+|+..|+++
T Consensus 78 ~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 78 DEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred HHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999999987 99999999999975
No 43
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.68 E-value=8.5e-16 Score=110.66 Aligned_cols=111 Identities=30% Similarity=0.534 Sum_probs=95.3
Q ss_pred CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC---------------------CCCc
Q 028667 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR---------------------SSKS 128 (205)
Q Consensus 70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~---------------------~~~~ 128 (205)
+++++.++.++.++.+.|.+++...+||+ +++++++|+++..++++.+..... ....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--d~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVV--DDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEE--CCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 37889999999999999999999999999 888999999999998764321100 0124
Q ss_pred CccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184 (205)
Q Consensus 129 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~ 184 (205)
.++.++|.+. +..+.+++++.++++.|.+.+.+.+||+++|+++|+||+.|+++
T Consensus 81 ~~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~~ 134 (135)
T cd04586 81 RKVADVMTRP--VVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLLR 134 (135)
T ss_pred CCHHHHhCCC--ceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhhc
Confidence 5788999874 89999999999999999999999999999999999999999875
No 44
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.67 E-value=2.7e-15 Score=104.21 Aligned_cols=108 Identities=40% Similarity=0.613 Sum_probs=94.8
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+..+.++.++.++.+.|.+.+.+.+||+ +++|+++|+++..++++.+... .....++.++|.+. ++.+.+++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~~l~~~~~~~--~~~~~~v~~~~~~~--~~~v~~~~~~ 76 (112)
T cd04624 3 VVTVDPDTSIREAAKLMAEENVGSVVVV--DPDERPIGIVTERDIVRAVAAG--IDLDTPVSEIMTRD--LVTVDPDEPV 76 (112)
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCCEEEEeeHHHHHHHHhcc--CCCccCHHHhccCC--CEEECCCCcH
Confidence 7889999999999999998899999999 7789999999999987755432 22356788999874 8899999999
Q ss_pred HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.++++.|.+++...+||+++ |+++|+++++|+++
T Consensus 77 ~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 77 AEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred HHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 99999999999999999987 99999999999874
No 45
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.67 E-value=2.3e-15 Score=104.66 Aligned_cols=109 Identities=19% Similarity=0.345 Sum_probs=95.1
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+++++++.++.++.+.|.+.+.+.+||+ +++|+++|+|+..++++.+. ........++.++|.+. +.++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~G~v~~~~l~~~~~-~~~~~~~~~v~~~~~~~--~~~v~~~~~~ 77 (114)
T cd04613 3 VVTIPEDTPLNELLDVIAHSPENNFPVV--DDDGRLVGIVSLDDIREILF-DPSLYDLVVASDIMTKP--PVVVYPEDSL 77 (114)
T ss_pred ceeeCCCCcHHHHHHHHHhCCCcceeEE--CCCCCEEEEEEHHHHHHHHh-cccccccEEHHHhccCC--CcEEcCCCCH
Confidence 7899999999999999999899999999 77899999999999876443 32222236789999885 9999999999
Q ss_pred HHHHHHHHhCCCCEEEEeeC--CeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDD--KGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~--~~~vGiIt~~dil~ 184 (205)
.++++.|...+.+.+||+++ |+++|+++..|++.
T Consensus 78 ~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 78 EDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred HHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 99999999999999999987 89999999999875
No 46
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.67 E-value=2.1e-15 Score=104.93 Aligned_cols=110 Identities=31% Similarity=0.524 Sum_probs=95.0
Q ss_pred CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (205)
Q Consensus 70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 149 (205)
++++++++.++.++.+.|.+.+.+.+||+ +++|+++|+++..++++.+. ........++.++|.+. +.+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~~i~~~~~-~~~~~~~~~v~~~~~~~--~~~v~~~~~ 77 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVV--DEDGRLVGIFTDGDLRRALE-KGLDILTLPVADVMTRN--PKTIDPDAL 77 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEE--cCCCCEEEEechHHHHHHHh-ccCccccCCHHHhhccC--CeEECCCCc
Confidence 37889999999999999988888999999 78899999999999776543 32222345799999885 889999999
Q ss_pred HHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 150 VLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 150 l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
+.++++.|..++.+++||+++ |+++|+|+..|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 78 AAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 999999999999999999985 99999999999975
No 47
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.67 E-value=2.9e-15 Score=103.72 Aligned_cols=106 Identities=29% Similarity=0.477 Sum_probs=92.9
Q ss_pred CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (205)
Q Consensus 70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 149 (205)
++..+.++.++.++++.|.+++.+.+||+ +++|+++|+++.+++++.+... ..++.++|.+. +.+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~~~~-----~~~~~~~~~~~--~~~v~~~~~ 73 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVV--DEDGRLVGIVTSWDISKAVARD-----KKSVEDIMTRN--VITATPDEP 73 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEE--CCCCcEEEEEeHHHHHHHHhhC-----ccCHHHhcCCC--CeEECCCCc
Confidence 38899999999999999999999999999 7889999999999987643321 23588888774 889999999
Q ss_pred HHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 150 VLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 150 l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
+.++++.|.+++...+||+++ |+++|+|++.|+++
T Consensus 74 l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 74 IDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 999999999999999999986 89999999999864
No 48
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.67 E-value=2.4e-15 Score=103.44 Aligned_cols=102 Identities=24% Similarity=0.317 Sum_probs=90.9
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+++++++.++.++++.|.+.+.+.+||+ +++|+++|+++..|+++. ...++.++|.+. +..+.+++++
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~--d~~g~~~Giv~~~dl~~~--------~~~~~~~~~~~~--~~~~~~~~~~ 70 (106)
T cd04582 3 PITVRPDDPLSDALGLMDDSDLRALTVV--DADGQPLGFVTRREAARA--------SGGCCGDHAEPF--KVTVSVDDDL 70 (106)
T ss_pred CcEecCCCcHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEeHHHHHHh--------cccchhhhcccC--CEEECCCCCH
Confidence 7889999999999999998889999999 788999999999998753 123578888874 7889999999
Q ss_pred HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.++++.|.+++.+.+||+++ |+++|+|+++++++
T Consensus 71 ~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 71 RIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999999987 89999999999875
No 49
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.67 E-value=2.3e-15 Score=104.40 Aligned_cols=106 Identities=19% Similarity=0.367 Sum_probs=91.4
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 149 (205)
+.+++++.++.++.+.|.+.+.+.+||+ +++ |+++|+++..++++... .... ..++.++|.+ +.+++++++
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~--~~~~~~~~G~v~~~~l~~~~~-~~~~--~~~~~~~~~~---~~~v~~~~~ 74 (111)
T cd04590 3 IVALDADDTLEEILELIAESGHSRFPVY--DGDLDNIIGVVHVKDLLRALA-EGEE--DLDLRDLLRP---PLFVPESTP 74 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCCceEEEE--CCCCceEEEEEEHHHHHHHHH-cCCC--cCCHHHHhcC---CeecCCCCc
Confidence 7889999999999999999889999999 777 99999999999877543 2211 1456777754 788999999
Q ss_pred HHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 150 VLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 150 l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
+.++++.|.+++.+++||+++ |+++|+||+.|+++
T Consensus 75 l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 75 LDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred HHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 999999999999999999987 99999999999874
No 50
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.67 E-value=2.2e-15 Score=107.23 Aligned_cols=112 Identities=26% Similarity=0.388 Sum_probs=90.7
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH-----HHHcCCCCCcCccccccccCCceEEE-
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK-----IIVQGRSSKSTKVGDIMTEENKLITV- 144 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~-----~~~~~~~~~~~~v~~im~~~~~~~~v- 144 (205)
+.++.+++++.++++.|.+.+.+.+||+ +++|+++|+++..|+... +...+......+++++|.+....+.+
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~ 80 (126)
T cd04640 3 PIVIPADTSIDEALELMIKHGVRLLLVV--DSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALD 80 (126)
T ss_pred CeEECCCCcHHHHHHHHHHcCCcEEEEE--cCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhcccc
Confidence 7889999999999999998889999999 788999999999997742 22211223456799999864111223
Q ss_pred ---cCCCcHHHHHHHHHhCCCCEEEEeeC--CeEEEEEeHHHHHH
Q 028667 145 ---SPDTKVLRAMQLMTDNRIRHIPVIDD--KGMIGMVSIGDVVR 184 (205)
Q Consensus 145 ---~~~~~l~~a~~~~~~~~~~~~pVv~~--~~~vGiIt~~dil~ 184 (205)
.+++++.++++.|.+++.+++||+++ |+++|+||++|+++
T Consensus 81 ~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 81 LEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 26889999999999999999999986 59999999999986
No 51
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.67 E-value=2.7e-15 Score=103.58 Aligned_cols=104 Identities=25% Similarity=0.454 Sum_probs=92.3
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+..++++.++.++.+.|.+.+...+||+ +++|+++|+++..|++... ....++.++|.+. +.++++++++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~------~~~~~v~~~~~~~--~~~v~~~~~~ 73 (109)
T cd04583 4 PVTITPDRTLAEAIKLMRDKKVDSLLVV--DKDNKLLGIVSLESLEQAY------KEAKSLEDIMLED--VFTVQPDASL 73 (109)
T ss_pred CEEECCCCCHHHHHHHHHHCCCceEEEE--cCCCcEEEEEEHHHHHHHh------hcCCcHhHhhcCC--ceEECCCCcH
Confidence 7889999999999999999899999999 7789999999999986532 1235788899875 8999999999
Q ss_pred HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.++++.|.+++..++||+++ |+++|++|.+|+++
T Consensus 74 ~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 74 RDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 99999999999999999986 89999999999874
No 52
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=1.8e-15 Score=107.15 Aligned_cols=110 Identities=29% Similarity=0.466 Sum_probs=93.9
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHHHHHHcCCC----------CCcCccccccccCC
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRS----------SKSTKVGDIMTEEN 139 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~~~~~~~~~----------~~~~~v~~im~~~~ 139 (205)
+.++.++.++.++++.|.+.+...+||+ +++ |+++|+|+..++++.+...... ....++.++|.+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~--d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (125)
T cd04631 3 VVTVPPTTPIMEAAKIMVRNGFRRLPVV--DEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRN- 79 (125)
T ss_pred ceEeCCCCcHHHHHHHHHHcCcccceeE--eCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCC-
Confidence 7889999999999999999999999999 676 9999999999987654321100 0134788898774
Q ss_pred ceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 140 ~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
++++++++++.++++.|.+.+.+++||+++ |+++|+||..|+++
T Consensus 80 -~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 80 -VITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred -ceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 999999999999999999999999999987 89999999999986
No 53
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.66 E-value=4.2e-15 Score=102.92 Aligned_cols=107 Identities=36% Similarity=0.597 Sum_probs=93.2
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+..++++.++.++.+.|.+.+...+||+ ++ ++++|+++.+++++...... . ...+++++|.+. +..+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~~l~~~~~~~~-~-~~~~v~~~~~~~--~~~~~~~~~l 75 (111)
T cd04611 3 ILTCPPDTSLAEAASRMRERRISSIVVV--DD-GRPLGIVTERDILRLLASGP-D-LQTPVGEVMSSP--LLTVPADTSL 75 (111)
T ss_pred ceEECCCCcHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEeHHHHHHHHhcCC-C-CCcCHHHhcCCC--ceEECCCCCH
Confidence 7889999999999999998888999999 55 89999999999876543221 1 456789999874 8999999999
Q ss_pred HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.++++.|.+.+.+++||+++ |+++|+|+.+|+++
T Consensus 76 ~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 76 YDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 99999999999999999987 99999999999875
No 54
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.66 E-value=3.9e-15 Score=102.17 Aligned_cols=101 Identities=33% Similarity=0.574 Sum_probs=90.7
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+..+.+++++.++++.|.+++.+.+||+ + +++++|+++.++++.. ....++.++|.+. +.++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d-~~~~~Giv~~~~l~~~-------~~~~~~~~~~~~~--~~~v~~~~~l 70 (105)
T cd04599 3 PITIDPLDSVGRAARLMEKHRIGGLPVV--E-DGKLVGIITSRDVRRA-------HPNRLVADAMTRE--VVTISPEASL 70 (105)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEehHHhhcc-------cccCCHHHHccCC--CEEECCCCCH
Confidence 7889999999999999988888999999 6 5899999999997652 1345688999875 8999999999
Q ss_pred HHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVV 183 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil 183 (205)
.++++.|.+++...+||+++|+++|+||..+++
T Consensus 71 ~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~ 103 (105)
T cd04599 71 LEAKRLMEEKKIERLPVLRERKLVGIITKGTIA 103 (105)
T ss_pred HHHHHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence 999999999999999999999999999999987
No 55
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=3.1e-15 Score=105.37 Aligned_cols=110 Identities=33% Similarity=0.514 Sum_probs=93.8
Q ss_pred CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC---------CCCcCccccccccCCc
Q 028667 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR---------SSKSTKVGDIMTEENK 140 (205)
Q Consensus 70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~---------~~~~~~v~~im~~~~~ 140 (205)
++.++.++.++.++.+.|.+.+.+.+||+ ++ |+++|+++..++++.+..... .....++.++|...
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~--~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 76 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVI--EG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRP-- 76 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEE--EC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCC--
Confidence 37889999999999999998899999999 65 999999999998765432211 11245788889774
Q ss_pred eEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667 141 LITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184 (205)
Q Consensus 141 ~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~ 184 (205)
+.++++++++.+++..|.+.+...+||+++|+++|+|+..|+++
T Consensus 77 ~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~~ 120 (121)
T cd04633 77 VITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDILR 120 (121)
T ss_pred ceEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhhc
Confidence 89999999999999999999999999998899999999999975
No 56
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.65 E-value=3.5e-15 Score=106.34 Aligned_cols=110 Identities=25% Similarity=0.399 Sum_probs=93.3
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcC------------CCCCcCccccccccC
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG------------RSSKSTKVGDIMTEE 138 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~------------~~~~~~~v~~im~~~ 138 (205)
+..+.+++++.++.+.|.+.+.+.+||+ +++|+++|+++.++++..+.... ......++.++|...
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd04632 3 VITVREDDSVGKAINVLREHGISRLPVV--DDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSP 80 (128)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCEEEEE--CCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCC
Confidence 7889999999999999999999999999 88899999999999876443210 011245688999774
Q ss_pred CceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC---CeEEEEEeHHHHHH
Q 028667 139 NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD---KGMIGMVSIGDVVR 184 (205)
Q Consensus 139 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~---~~~vGiIt~~dil~ 184 (205)
++++++++++.++++.|.+.+...+||+++ |+++|+||++|+++
T Consensus 81 --~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 81 --VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred --CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 899999999999999999999999999853 89999999999875
No 57
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.65 E-value=3e-15 Score=106.55 Aligned_cols=109 Identities=23% Similarity=0.395 Sum_probs=89.9
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCc-------------Ccccccccc
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS-------------TKVGDIMTE 137 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~-------------~~v~~im~~ 137 (205)
++++++++++.++++.|.+++.+.+||+ |++|+++|+++..|+++...... .... ....+.|..
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~--d~~~~~~Giv~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKNNISGLPVV--DEKGKLIGNISASDLKGLLLSPD-DLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred eEEECCCccHHHHHHHHHHhCCCcccEE--CCCCcEEEEEEHHHhhhhhcCcc-hhhcccchhhhhhhhhcccccccccC
Confidence 7899999999999999999999999999 78899999999999876442211 1111 012234545
Q ss_pred CCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 138 ENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 138 ~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
++.++++++++.+|++.|.+++.+.+||+++ |+++|+||..|+++
T Consensus 80 --~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 80 --PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred --CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 4899999999999999999999999999997 89999999999975
No 58
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.65 E-value=3.4e-15 Score=102.69 Aligned_cols=101 Identities=23% Similarity=0.319 Sum_probs=89.6
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
-.++.+++++.++++.|.+.+...+||+ ++ |+++|+++..++++. ...++.++|.+. +.++++++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~--------~~~~~~~~~~~~--~~~v~~~~~l 69 (104)
T cd04594 3 DIKVKDYDKVYEAKRIMIENDLLSLPVV--DY-NKFLGAVYLKDIENA--------TYGDVVDYIVRG--IPYVRLTSTA 69 (104)
T ss_pred ceEECCCCCHHHHHHHHHHcCCcEEEEE--EC-CEEEEEEEHHHHhhh--------cccchhhhhhcC--CcEEcCCCCH
Confidence 3578999999999999999999999999 66 999999999997652 123577888775 8999999999
Q ss_pred HHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~ 184 (205)
.++++.|.+++.+.+||+++|+++|+||.+|++.
T Consensus 70 ~~a~~~~~~~~~~~~~Vv~~~~~iGvit~~dl~~ 103 (104)
T cd04594 70 EEAWEVMMKNKTRWCPVVDDGKFKGIVTLDSILD 103 (104)
T ss_pred HHHHHHHHHcCcceEEEEECCEEEEEEEHHHhhc
Confidence 9999999999999999999999999999999875
No 59
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.65 E-value=2.4e-15 Score=102.31 Aligned_cols=93 Identities=33% Similarity=0.473 Sum_probs=84.2
Q ss_pred CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (205)
Q Consensus 70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 149 (205)
+++.+.++.++.++++.|.+.+.+.+||+ |++|+++|+++.+|++.. . . +.+++++++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~--------~----------~--~~~v~~~~~ 59 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVL--DDDGKLSGIITERDLIAK--------S----------E--VVTATKRTT 59 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEEHHHHhcC--------C----------C--cEEecCCCC
Confidence 37899999999999999998999999999 888999999999997641 0 1 678999999
Q ss_pred HHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 150 VLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 150 l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
+.++++.|.+++.+++||+++ |+++|+||++|+++
T Consensus 60 l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 60 VSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred HHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 999999999999999999997 89999999999975
No 60
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.65 E-value=5.9e-15 Score=103.06 Aligned_cols=108 Identities=31% Similarity=0.556 Sum_probs=89.9
Q ss_pred ceEeCCCchHHHHHHHHHhcC-CCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCC--
Q 028667 71 WLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPD-- 147 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~-~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~-- 147 (205)
+..++++.++.++++.|...+ ...+||+ + +|+++|+++..|+++.+. ........++.++|... +++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~~G~v~~~dl~~~~~-~~~~~~~~~i~~~~~~~--~~~v~~~~~ 76 (115)
T cd04620 3 PLTVTPDTPVADAIALMSQQGDSSCVLVV--E-KGRLLGIFTERDIVRLTA-IGKDLSDLPIGEVMTQP--VVTLQESEI 76 (115)
T ss_pred CeEeCCCCcHHHHHHHHHhcCCCceEEEc--C-CCcEEEEEeHHHHHHHHh-cCCCccccCHHHhcCCC--cEEEecccc
Confidence 778999999999999998877 6677777 5 589999999999876433 22222346788999874 7888877
Q ss_pred CcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 148 TKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 148 ~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
+++.++++.|.+++.+.+||+++ |+++|+||++|+++
T Consensus 77 ~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 77 QDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred cCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 68999999999999999999987 89999999999975
No 61
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.64 E-value=5.2e-15 Score=103.40 Aligned_cols=104 Identities=18% Similarity=0.315 Sum_probs=89.2
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCC---CCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcC-
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSP- 146 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~---~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~- 146 (205)
+.++.+++++.++.+.|.+++.+.+||+ |+ +|+++|+++..+++.. . ....++.++|... +..+..
T Consensus 4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~~~~G~v~~~dl~~~-~-----~~~~~v~~~~~~~--~~~~~~~ 73 (114)
T cd04602 4 PSVLSPDHTVADVLEIKEKKGFSGIPVT--EDGKSGGKLLGIVTSRDIDFL-T-----DSETPLSEVMTPR--EVLVVAP 73 (114)
T ss_pred CeEcCCCCCHHHHHHHHHHcCCCceEEe--eCCCcCCEEEEEEEhHHhhhh-h-----ccCCCHHHhcCCC--ceEEECC
Confidence 7889999999999999998888999999 65 7899999999997532 1 1235688999875 566655
Q ss_pred -CCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 147 -DTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 147 -~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
++++.++++.|.+++.+.+||+++ |+++|+||++|+++
T Consensus 74 ~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 74 TGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 999999999999999999999986 99999999999875
No 62
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.64 E-value=3.5e-15 Score=103.40 Aligned_cols=101 Identities=27% Similarity=0.469 Sum_probs=88.0
Q ss_pred eCCCchHHHHHHHHHhcC-----CCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCC
Q 028667 74 CTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDT 148 (205)
Q Consensus 74 v~~~~~l~~a~~~~~~~~-----~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~ 148 (205)
+.+++++.++++.|.+++ ...+||+ +++|+++|+++.+++++. ....++.++|.+. +..+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv--d~~~~~~G~v~~~~l~~~-------~~~~~v~~~~~~~--~~~i~~~~ 70 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVV--DEEGRLLGVVSLRDLLLA-------DPDTPVSDIMDTD--VISVSADD 70 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEE--CCCCCEEEEEEHHHHhcC-------CCcchHHHHhCCC--CeEEcCCC
Confidence 578899999999998766 4689999 788999999999997641 1345788999874 89999999
Q ss_pred cHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHH
Q 028667 149 KVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRA 185 (205)
Q Consensus 149 ~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~ 185 (205)
++.++++.|.+.+.+++||+++ |+++|+|+..|+++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 71 DQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred CHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 9999999999999999999986 899999999999875
No 63
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.64 E-value=8.2e-15 Score=102.98 Aligned_cols=109 Identities=34% Similarity=0.528 Sum_probs=93.2
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCC---------CCcCccccccccCCce
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS---------SKSTKVGDIMTEENKL 141 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~---------~~~~~v~~im~~~~~~ 141 (205)
+.++.++.++.++.+.|.+.+...+||+ ++ |+++|+++..+++......... ....++.++|.+. +
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 77 (122)
T cd04585 3 PITVTPDTSLMEALKLMKENSIRRLPVV--DR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRD--P 77 (122)
T ss_pred CEEeCCCCcHHHHHHHHHhCCcceeeEe--cC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCC--C
Confidence 7889999999999999999999999999 66 9999999999987654321110 0135688899874 8
Q ss_pred EEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 142 ~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.++++++++.+++..|.+.+.+.+||+++ |+++|+||..|+++
T Consensus 78 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 78 ITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred eEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 99999999999999999999999999997 99999999999975
No 64
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.64 E-value=1.1e-14 Score=100.76 Aligned_cols=106 Identities=26% Similarity=0.477 Sum_probs=92.4
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+..++++.++.++.+.|.+.+.+.+||+ ++ |+++|+++..++++.. ..+ ....++.++|... +.++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~~l~~~~-~~~--~~~~~v~~~~~~~--~~~v~~~~~~ 74 (110)
T cd04588 3 LITLNPNATLREAARLFNTHHIHGAPVV--DD-GKLVGIVTLSDIAHAI-ARG--LELAKVKDVMTKD--VITIDEDEQL 74 (110)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEEHHHHHHHH-hcc--ccccCHHHHhcCC--ceEECCCCCH
Confidence 7889999999999999999899999999 67 8999999999987643 222 1235788888764 8999999999
Q ss_pred HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.++++.|.+.+.+.+||+++ |+++|+|++.|+++
T Consensus 75 ~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 75 YDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 99999999999999999987 99999999999874
No 65
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=5.4e-15 Score=104.24 Aligned_cols=110 Identities=31% Similarity=0.498 Sum_probs=93.7
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcC---CC-----CCcCccccccccCCceE
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG---RS-----SKSTKVGDIMTEENKLI 142 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~---~~-----~~~~~v~~im~~~~~~~ 142 (205)
+..++++.++.++.+.|.+.+.+.+||+ |++|+++|+++..++++...... .. ....++.++|... +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 78 (122)
T cd04635 3 PVTCTPDDPVSKVWDLMLESGFTGLPVV--QKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTP--VY 78 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcccEE--CCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCC--Ce
Confidence 7889999999999999998899999999 88899999999999876421110 00 1345688888774 89
Q ss_pred EEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 143 TVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 143 ~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.+++++++.++++.|.+++.+.+||+++ |+++|++|..|+++
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 79 SVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred eECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 9999999999999999999999999987 89999999999975
No 66
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.63 E-value=5.3e-15 Score=127.47 Aligned_cols=122 Identities=25% Similarity=0.299 Sum_probs=102.9
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCC---CCceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTK 130 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~---~~~~~G~v~~~dll~~~~~~~~~~~~~~ 130 (205)
.+|+++|..... +++++++++++.++++.|.+++.+.+||+ |+ +++++|+||.+|+... ....+.+
T Consensus 94 ~kVk~~~~g~i~----~~~tV~pd~tl~eAl~~m~~~~~~~vpVV--D~~~~~gkLvGIVT~~DLr~~-----~~~~~~~ 162 (502)
T PRK07107 94 RRVKNYKAGFVV----SDSNLTPDNTLADVLDLKEKTGHSTVAVT--EDGTAHGKLLGIVTSRDYRIS-----RMSLDTK 162 (502)
T ss_pred HHHHHHhcCCcC----CCCEeCCCCcHHHHHHHHHhcCCCeEEEE--eCCCcCCEEEEEEEcHHhhcc-----ccCCCCC
Confidence 357888863211 16799999999999999999999999999 54 6899999999997431 1234678
Q ss_pred cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHH
Q 028667 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAV 186 (205)
Q Consensus 131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l 186 (205)
++++|++.++++++++++++.+|+++|.++++..+||+|+ |+++|+||++|+++..
T Consensus 163 V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 163 VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred HHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 9999996435899999999999999999999999999996 8999999999999864
No 67
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.63 E-value=9.2e-15 Score=100.99 Aligned_cols=98 Identities=20% Similarity=0.318 Sum_probs=87.4
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCC---CCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCC
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPD 147 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~---~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~ 147 (205)
...++++.++.++.+.+.+.+...+||+ ++ +|+++|+|+.+++...... +|.+. +.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~~~~G~v~~~dl~~~~~~------------~m~~~--~~~v~~~ 67 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVV--DSTEESPRLVGYILRSQLVVALKN------------YIDPS--PFTVSPR 67 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceE--cCCCCCCEEEEEEeHHHHHHHHHH------------hccCC--CceECCC
Confidence 6789999999999999999888899999 66 6999999999997654211 77764 8899999
Q ss_pred CcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667 148 TKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184 (205)
Q Consensus 148 ~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~ 184 (205)
+++.++++.|.+++.+++||+++|+++|+|+++|+++
T Consensus 68 ~~l~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 68 TSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLLK 104 (105)
T ss_pred CcHHHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhhc
Confidence 9999999999999999999998899999999999975
No 68
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.62 E-value=7e-15 Score=101.63 Aligned_cols=104 Identities=26% Similarity=0.478 Sum_probs=90.3
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcC-CCc
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSP-DTK 149 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~-~~~ 149 (205)
+..+.++.++.++.+.|.+++.+.+||+ +++|+++|+++.++++.. .....++.++|... +..+.. +++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~------~~~~~~v~~~~~~~--~~~~~~~~~~ 73 (110)
T cd04601 4 PITVSPDATVAEALELMAEYGISGLPVV--DDDGKLVGIVTNRDLRFE------TDLDKPVSEVMTPE--NLLTTVEGTS 73 (110)
T ss_pred CeEeCCCCcHHHHHHHHHHcCCceEEEE--cCCCEEEEEEEhhHeeec------ccCCCCHHHhcccC--ceEEecCCCC
Confidence 7889999999999999998899999999 788999999999997532 12346789999764 566666 999
Q ss_pred HHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 150 VLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 150 l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
+.++++.|.+.+.+.+||+++ |+++|+|+.+|+++
T Consensus 74 l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 74 LEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 999999999999999999986 99999999999875
No 69
>PRK11573 hypothetical protein; Provisional
Probab=99.62 E-value=6.1e-15 Score=124.86 Aligned_cols=135 Identities=15% Similarity=0.278 Sum_probs=115.3
Q ss_pred cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK 130 (205)
Q Consensus 51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~ 130 (205)
|++.+|+++|.|..+ +.+++.+.++.++.+.+.+++++++||++ ++.++++|+|..+|++..... +.......
T Consensus 184 l~~~~v~eiMtPr~~-----i~~l~~~~~~~e~~~~~~~~~~SR~PVy~-~~~D~IiGiv~~kDll~~~~~-~~~~~~~~ 256 (413)
T PRK11573 184 LEKVTVDDIMVPRNE-----IVGIDINDDWKSILRQLTHSPHGRIVLYR-DSLDDAISMLRVREAYRLMTE-KKEFTKEN 256 (413)
T ss_pred cCCCChhhcCCccce-----EEEEECCCCHHHHHHHHHhCCCceEEEEc-CCCCceEEEEEHHHHHHHhhc-cCcCCHHH
Confidence 789999999999876 99999999999999999999999999995 455889999999998864332 11112234
Q ss_pred cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHHH
Q 028667 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREELN 195 (205)
Q Consensus 131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~~ 195 (205)
+.+++++ +..++++.++.++++.|++++.+...|+|+ |...|+||.+|+++.+.+...++++
T Consensus 257 l~~~~r~---~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d 319 (413)
T PRK11573 257 MLRAADE---IYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMS 319 (413)
T ss_pred HHhhccC---CeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccC
Confidence 5567766 899999999999999999999999999999 9999999999999999988766543
No 70
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.62 E-value=2.6e-14 Score=98.37 Aligned_cols=103 Identities=35% Similarity=0.585 Sum_probs=90.9
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
..+++++.++.++.+.|.+.+.+.+||+ +++++++|+++.++++.. ....++.++|... +.++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~g~v~~~~l~~~-------~~~~~~~~~~~~~--~~~v~~~~~l 71 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVV--KKSGELVGIITRKDLLRN-------PEEEQLALLMTRD--PPTVSPDDDV 71 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEHHHHHhc-------cccchHHHHhcCC--CceECCCCCH
Confidence 7889999999999999998888999999 777999999999997641 1234678888774 8889999999
Q ss_pred HHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~ 184 (205)
.+++..|..++..++||+++|+++|+|+..|+++
T Consensus 72 ~~~~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~~ 105 (106)
T cd04638 72 KEAAKLMVENNIRRVPVVDDGKLVGIVTVADIVR 105 (106)
T ss_pred HHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhhc
Confidence 9999999999999999999899999999999875
No 71
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.61 E-value=1.8e-14 Score=99.15 Aligned_cols=102 Identities=28% Similarity=0.561 Sum_probs=90.3
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
++++..+.++.++++.|.+.+...+||+ ++ ++++|+++..+++.. ....++.++|.+. +..+.+++++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~-~~~~g~v~~~~l~~~-------~~~~~~~~~~~~~--~~~v~~~~~l 71 (107)
T cd04610 4 VITVSPDNTVKDVIKLIKETGHDGFPVV--DN-GKVVGIVSARDLLGK-------DPDETVEEIMSKD--LVVAVPEMDI 71 (107)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEHHHhhcc-------CccccHHHhCCCC--CeEECCCCCH
Confidence 7889999999999999988888889999 66 999999999997641 2345789999875 8999999999
Q ss_pred HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.++++.|.+++...+||+++ |+++|+|+..++++
T Consensus 72 ~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 72 MDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999987 89999999999975
No 72
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.61 E-value=2.2e-14 Score=99.27 Aligned_cols=107 Identities=32% Similarity=0.475 Sum_probs=91.9
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
++.++++.++.++.+.|.+.+.+.+||+ ++ ++++|+++..|+++... ... ....++.++|.+. +.++.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~dl~~~~~-~~~-~~~~~~~~~~~~~--~~~v~~~~~~ 75 (111)
T cd04612 3 VVTVPVDLTVDEVLALMFGERHRGYPVV--DD-GRLVGIVTLADIRRVPA-EGR-EATVLVGDVMTRD--PVTASPDETL 75 (111)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcceEe--eC-CeEEEEEEHHHHHHHHh-cCc-ccccCHHHhccCC--CeEECCCCCH
Confidence 7899999999999999998888999999 66 99999999999876432 211 1123677888774 9999999999
Q ss_pred HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.++++.|.+++.+++||+++ |+++|+|+..|+++
T Consensus 76 ~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 76 RDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred HHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 99999999999999999987 99999999999875
No 73
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.61 E-value=2.1e-14 Score=101.04 Aligned_cols=110 Identities=31% Similarity=0.449 Sum_probs=94.2
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC--------CCCcCccccccccCCceE
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR--------SSKSTKVGDIMTEENKLI 142 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~--------~~~~~~v~~im~~~~~~~ 142 (205)
+..++++.++.+|.+.|.+.+.+.+||+ |++|+++|+++..++++....... .....++.++|.+. ++
T Consensus 3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 78 (121)
T cd04584 3 VVTITPTTTIAEALELMREHKIRHLPVV--DEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKD--VI 78 (121)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCcccEE--CCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCC--Ce
Confidence 7889999999999999998889999999 788999999999998754321100 12345788999874 89
Q ss_pred EEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667 143 TVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184 (205)
Q Consensus 143 ~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~ 184 (205)
++++++++.++++.|.+++...+||+++|+++|+++..|+++
T Consensus 79 ~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~~ 120 (121)
T cd04584 79 TVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLLR 120 (121)
T ss_pred EECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhhc
Confidence 999999999999999999999999998899999999999875
No 74
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.61 E-value=1.9e-14 Score=123.76 Aligned_cols=122 Identities=20% Similarity=0.304 Sum_probs=104.0
Q ss_pred cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK 130 (205)
Q Consensus 51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~ 130 (205)
++..+++++|.++ +.++.+++++.++++.|.+++.+.+||+ |++++++|+|+.+|+++.+.... .....+
T Consensus 332 l~~~~v~~im~~~-------~~~v~~~~tl~ea~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~-~~~~~~ 401 (454)
T TIGR01137 332 LKNATVKDLHLPA-------PVTVHPTETVGDAIEILREYGFDQLPVV--TEAGKVLGSVTLRELLSALFAGK-ANPDDA 401 (454)
T ss_pred hccCCHHHhCcCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHHhccC-CCcCCC
Confidence 6788999999886 8999999999999999999899999999 78899999999999877554322 223457
Q ss_pred cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHH
Q 028667 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAV 186 (205)
Q Consensus 131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l 186 (205)
+.++|.+. +.++++++++.++++.|.+++ ..+|+++|+++|+||++|+++.+
T Consensus 402 v~~im~~~--~~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 402 VSKVMSKK--FIQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred HHHhcCCC--CeEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEHHHHHHhh
Confidence 99999874 889999999999999998864 35566679999999999999875
No 75
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.60 E-value=2.2e-14 Score=123.89 Aligned_cols=110 Identities=17% Similarity=0.305 Sum_probs=98.0
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCC---CCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCC
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPD 147 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~---~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~ 147 (205)
++++++++++.++.+.|.+++++.+||+ |+ +++++|+|+.+|+... .....++.++|++.+++++++++
T Consensus 110 pvtV~pd~tV~dA~~lm~~~~~~~lpVv--D~~~~~GklvGIVT~~DL~~v------~~~~~~V~eIMt~~~~lvtv~~~ 181 (505)
T PLN02274 110 PVVKSPSSTISSLDELKASRGFSSVCVT--ETGTMGSKLLGYVTKRDWDFV------NDRETKLSEVMTSDDDLVTAPAG 181 (505)
T ss_pred CeeeCCCCcHHHHHHHHHhcCCceEEEE--eCCCcCCeEEEEEEHHHHhhc------cccCCcHHHHhccCCCcEEECCC
Confidence 8999999999999999999999999999 55 4899999999997532 13467899999975347899999
Q ss_pred CcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667 148 TKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS 188 (205)
Q Consensus 148 ~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~ 188 (205)
+++.+|++.|.+++...+||+|+ ++++|+||++|+++.+..
T Consensus 182 ~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 182 IDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 99999999999999999999986 999999999999999875
No 76
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.59 E-value=1.9e-14 Score=123.37 Aligned_cols=120 Identities=25% Similarity=0.372 Sum_probs=104.4
Q ss_pred cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK 130 (205)
Q Consensus 51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~ 130 (205)
+...++.++|.++ ++++.+++++.++++.|.+++.+.+||+ | +++++|+|+.+|+.. .....+
T Consensus 85 v~~VKv~eim~~~-------pvtv~p~~tI~eA~~lm~~~~~~~~vVv--D-~gklvGIVT~rDL~~-------~~~~~~ 147 (475)
T TIGR01303 85 VAFVKSRDLVLDT-------PITLAPHDTVSDAMALIHKRAHGAAVVI--L-EDRPVGLVTDSDLLG-------VDRFTQ 147 (475)
T ss_pred HhhcchhhccccC-------CeEECCCCCHHHHHHHHHhcCCeEEEEE--E-CCEEEEEEEHHHhhc-------CCCCCC
Confidence 3567888888876 8999999999999999999999999998 5 468999999999642 123467
Q ss_pred cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE 189 (205)
Q Consensus 131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~ 189 (205)
+.++|++. ++++++++++.+|+++|.+++.+++||+|+ |+++|+||.+|+++.....
T Consensus 148 V~dIMt~~--litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 148 VRDIMSTD--LVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT 205 (475)
T ss_pred HHHHccCC--ceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence 99999985 999999999999999999999999999995 9999999999999976644
No 77
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.59 E-value=3.6e-14 Score=97.95 Aligned_cols=107 Identities=29% Similarity=0.414 Sum_probs=89.3
Q ss_pred CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCc
Q 028667 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (205)
Q Consensus 70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 149 (205)
++.++.+++++.++.+.|.+++.+.+||+ ++ ++++|+++..++++.+.... .....++.++|.+. +..++++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~dl~~~~~~~~-~~~~~~~~~~~~~~--~~~v~~~~~ 75 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVV--DD-GRVVGSIDESDLLDALIEGK-AKFSLPVREVMGEP--LPTVDPDAP 75 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEe--eC-CeeEEEEeHHHHHHHHhccc-cccCcCHHHHhcCC--CceeCCCCc
Confidence 47889999999999999999999999999 66 99999999999877544322 22245788999774 889999999
Q ss_pred HHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 150 VLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 150 l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
+.++++.|.+ .. .+||+++ |+++|+||.+|+++
T Consensus 76 l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 76 IEELSELLDR-GN-VAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred HHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhhc
Confidence 9999999988 33 4678876 99999999999975
No 78
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=4e-14 Score=99.85 Aligned_cols=109 Identities=31% Similarity=0.524 Sum_probs=92.5
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC-C--------CCcCccccccccCCce
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR-S--------SKSTKVGDIMTEENKL 141 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~-~--------~~~~~v~~im~~~~~~ 141 (205)
++.++++.++.++.+.|.+.+.+.+||+ ++ |+++|+++.+++++.+..... . ....++.++|... +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 77 (122)
T cd04637 3 VVTVEMDDRLEEVREIFEKHKFHHLLVV--ED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRD--P 77 (122)
T ss_pred ceEeCCCCCHHHHHHHHHhCCCCEEEEE--eC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCC--C
Confidence 7889999999999999999899999999 65 899999999998765431100 0 0134688888874 9
Q ss_pred EEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 142 ~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
+.+++++++.++++.|.+++...+||+++ |+++|++++.|+++
T Consensus 78 ~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 78 ITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred eeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 99999999999999999999999999987 89999999999985
No 79
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=7.8e-14 Score=101.58 Aligned_cols=110 Identities=31% Similarity=0.623 Sum_probs=93.3
Q ss_pred CceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC--C----------------------
Q 028667 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR--S---------------------- 125 (205)
Q Consensus 70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~--~---------------------- 125 (205)
+++++++++++.++.+.|.+.+.+.+||+ ++ |+++|+++.+++++.+..... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--d~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVL--DG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE 78 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEe--EC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence 37899999999999999999999999999 66 899999999998765432210 0
Q ss_pred -------CCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHH
Q 028667 126 -------SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 184 (205)
Q Consensus 126 -------~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~ 184 (205)
....++.++|... +.++++++++.+++..|.+.+..++||+++|+++|+|+..|++.
T Consensus 79 ~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~~ 142 (143)
T cd04634 79 TKRALTDAGKMKVRDIMTKK--VITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHHhcCCHHHHcCCC--CeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhhc
Confidence 0234677888774 89999999999999999999999999998899999999999874
No 80
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.58 E-value=3.5e-14 Score=113.99 Aligned_cols=114 Identities=23% Similarity=0.436 Sum_probs=98.6
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccc
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~ 132 (205)
-.+|+++|.++ +++.+.+++++.++++.|.+.+.+.+||+ |++|+++|+|+..|+++.+. .+ .....++.
T Consensus 154 ~~~v~~im~~~------~~~~v~~~~~v~~a~~~~~~~~~~~~~Vv--d~~g~~~Givt~~dl~~~~~-~~-~~~~~~v~ 223 (268)
T TIGR00393 154 LVKVKDLMQTT------DLPLIAPTTSFKDALLEMSEKRLGSAIVC--DENNQLVGVFTDGDLRRALL-GG-GSLKSEVR 223 (268)
T ss_pred hhhHHHHhCCC------CCCcCCCCCcHHHHHHHHhhcCCcEEEEE--eCCCCEEEEEEcHHHHHHHh-cC-CcccCcHH
Confidence 47899999874 16789999999999999998899999999 78899999999999876433 22 22456799
Q ss_pred cccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEe
Q 028667 133 DIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVS 178 (205)
Q Consensus 133 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt 178 (205)
++|.+. ++++++++++.+|++.|.+++..++||+++ |+++|+|+
T Consensus 224 ~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 224 DFMTLG--PKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred HhCCCC--CeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 999884 889999999999999999999999999987 89999985
No 81
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.57 E-value=2.5e-14 Score=122.53 Aligned_cols=117 Identities=25% Similarity=0.449 Sum_probs=101.1
Q ss_pred cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC---CceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYLRKIIVQGRSSKSTKV 131 (205)
Q Consensus 55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~---~~~~G~v~~~dll~~~~~~~~~~~~~~v 131 (205)
++++.|.++ +++++++.++.++.+.|.+++++.+||+ +++ ++++|+|+.+|++.. .....++
T Consensus 81 ~~~~~~~~~-------~vtl~~~~tv~eal~~m~~~~~s~lpVv--d~~~~~~~lvGIVt~rDL~~~------~~~~~~V 145 (450)
T TIGR01302 81 RAENGIISD-------PVTISPETTVADVLELMERKGISGIPVV--EDGDMTGKLVGIITKRDIRFV------KDKGKPV 145 (450)
T ss_pred cccCceecC-------ceEeCCCCCHHHHHHHHHHcCCCEEEEE--eCCCCCCeEEEEEEHHHHhhh------hcCCCCH
Confidence 445556554 8999999999999999999999999999 666 799999999997642 1235689
Q ss_pred ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV 187 (205)
Q Consensus 132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~ 187 (205)
.++|++. +++++++++++.++++.|.+++.+.+||+|+ |+++|+||++|+++.+.
T Consensus 146 ~dvm~~~-~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 146 SEVMTRE-EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred HHhhCCC-CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 9999831 3999999999999999999999999999997 99999999999999864
No 82
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.57 E-value=1.4e-13 Score=94.57 Aligned_cols=109 Identities=39% Similarity=0.671 Sum_probs=93.1
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
+..+.++.++.++.+.|.+.+...+||+ +++++++|+++.++++........ .....+.++|... +..+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~G~v~~~~l~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~ 77 (113)
T cd02205 3 VVTVSPDDTVAEALRLMLEHGISGLPVV--DDDGRLVGIVTERDLLRALAEGGL-DPLVTVGDVMTRD--VVTVSPDTSL 77 (113)
T ss_pred ceEecCCCCHHHHHHHHHhcCCceEEEE--CCCCCEEEEEeHHHHHHHHHhccC-CccccHHHHhcCC--ceecCCCcCH
Confidence 7889999999999999999889999999 788999999999998876543221 1112266788774 8999999999
Q ss_pred HHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 151 LRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 151 ~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.++++.|.+.+.+++||+++ |+++|+++..|+++
T Consensus 78 ~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 78 EEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 99999999999999999988 99999999999875
No 83
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.56 E-value=6e-14 Score=121.29 Aligned_cols=117 Identities=29% Similarity=0.459 Sum_probs=102.8
Q ss_pred cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccc
Q 028667 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134 (205)
Q Consensus 55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~i 134 (205)
.++++|..+ +.+++++.++.++.+.|.+++++.+||+ +++++++|+|+.+|+... .....++.++
T Consensus 88 ~~~dim~~~-------~v~i~~~~tv~ea~~~m~~~~~~~lpVv--d~~g~lvGiVt~~DL~~~------~~~~~~V~di 152 (486)
T PRK05567 88 RSESGVVTD-------PVTVTPDTTLAEALALMARYGISGVPVV--DENGKLVGIITNRDVRFE------TDLSQPVSEV 152 (486)
T ss_pred hhhhcccCC-------CeEeCCCCCHHHHHHHHHHhCCCEEEEE--ccCCEEEEEEEHHHhhhc------ccCCCcHHHH
Confidence 467777765 9999999999999999999999999999 889999999999997532 1235679999
Q ss_pred cccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667 135 MTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV 187 (205)
Q Consensus 135 m~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~ 187 (205)
|.+. +++++++++++.++++.|.+++.+.+||+++ |+++|+||.+|+++.+.
T Consensus 153 m~~~-~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 153 MTKE-RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred cCCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence 9822 4899999999999999999999999999997 99999999999998864
No 84
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.55 E-value=6.6e-14 Score=119.38 Aligned_cols=142 Identities=17% Similarity=0.327 Sum_probs=118.9
Q ss_pred cccccccc--cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667 43 SARMEEHG--FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (205)
Q Consensus 43 ~~~~~~~~--~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~ 120 (205)
...+.++. |.+.+|+++|.|..+ +.+++.+.++.++.+.+.+++++++||++ ++.+.++|++..+|++....
T Consensus 193 E~~mi~~v~~l~~~~v~eiMtPR~~-----i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~~D~iiGiv~~Kdll~~~~ 266 (429)
T COG1253 193 EREMINNVLDLDDRTVREIMTPRTD-----IVALDLTDTVEELIELILESGHSRIPVYD-GDLDNIIGIVHVKDLLRALL 266 (429)
T ss_pred HHHHHHHHhccCCcEeeeEeeeccc-----EEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CCCCcEEEEEEHHHHHHHHh
Confidence 33454443 689999999999765 89999999999999999999999999995 57889999999999998765
Q ss_pred HcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHHHH
Q 028667 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREELNR 196 (205)
Q Consensus 121 ~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~~~ 196 (205)
.... .......+.+ ++.+++.+++.++++.|++++.+...|+|+ |.+.|+||.+||++.+.+...++++.
T Consensus 267 ~~~~---~~~~~~~~~~---~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~ 337 (429)
T COG1253 267 DGQS---DLDLRVLVRP---PLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDE 337 (429)
T ss_pred cCcc---ccchhhcccC---CeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccc
Confidence 4321 1222233334 899999999999999999999999999999 99999999999999999988766543
No 85
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=8.6e-14 Score=97.64 Aligned_cols=109 Identities=18% Similarity=0.278 Sum_probs=88.6
Q ss_pred ceEeCCCchHHHHHHHHHhcC-CCeEEEEecCCCCceEEEEehHHHHHHHHHc--CCCCCcCccccccccCCceEEEcCC
Q 028667 71 WLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERDYLRKIIVQ--GRSSKSTKVGDIMTEENKLITVSPD 147 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~-~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~--~~~~~~~~v~~im~~~~~~~~v~~~ 147 (205)
++++++++++.++.+.|...+ .+.+||+ ++ |+++|+++.++++..+... .......++.++|.+. +..++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv--d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~ 77 (119)
T cd04598 3 APTVSPDTTVNDVLERFERDPDLSALAVV--DD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPD--PLIVEAD 77 (119)
T ss_pred cCccCCCCcHHHHHHHHHhCCCccEEEEE--EC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCC--cEEecCC
Confidence 778999999999999998876 8899999 77 9999999999987543211 0011345799999874 9999999
Q ss_pred CcHHHHHHHHHhCCCC---EEEEeeC-CeEEEEEeHHHHHH
Q 028667 148 TKVLRAMQLMTDNRIR---HIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 148 ~~l~~a~~~~~~~~~~---~~pVv~~-~~~vGiIt~~dil~ 184 (205)
+++.++++.|.+++.. ..||+++ |+++|+|+..|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 78 TPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred CCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 9999999999998753 3456665 99999999999875
No 86
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.54 E-value=5.8e-14 Score=121.19 Aligned_cols=109 Identities=21% Similarity=0.335 Sum_probs=96.1
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCC---CCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCC
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPD 147 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~---~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~ 147 (205)
++++++++++.++.++|.+.+++.+||+ ++ +++++|+|+.+|+... .....++.++|++.+++++++++
T Consensus 106 pvtv~pd~tv~eA~~lm~~~~~s~vpVv--d~~~~~gkLvGIVt~~DL~~~------~~~~~~V~diMt~~~~lvtv~~~ 177 (495)
T PTZ00314 106 PYVLSPNHTVADVLEIKEKKGFSSILIT--VDGKVGGKLLGIVTSRDIDFV------KDKSTPVSEVMTPREKLVVGNTP 177 (495)
T ss_pred CeecCCCCCHHHHHHHHHHcCCcEEEEE--eCCccCCeEEEEEEHHHHhhc------ccCCCCHHHhhCCcCCceEeCCC
Confidence 8999999999999999999999999999 55 4899999999997521 22456899999873248999999
Q ss_pred CcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667 148 TKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV 187 (205)
Q Consensus 148 ~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~ 187 (205)
+++.+|+++|.+++...+||+|+ ++++|+||++|+++...
T Consensus 178 ~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 178 ISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred CCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 99999999999999999999997 89999999999998754
No 87
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.51 E-value=7.6e-14 Score=106.62 Aligned_cols=168 Identities=17% Similarity=0.291 Sum_probs=138.4
Q ss_pred hcCCcchHHHHHHHhhcCCCCcccccccccccccccccccc--cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHH
Q 028667 10 SHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHG--FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSM 87 (205)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~ 87 (205)
+..|-..+++++.++.+.... ........|.+.. ..++.|+|+|.|..+ ..++..+.++.+.+..+
T Consensus 28 ~gEpknr~eLl~liRdse~n~-------LiD~dt~~mlEGvm~iadl~vrDiMIPRSQ-----M~~l~~~~~l~~~l~~i 95 (293)
T COG4535 28 HGEPKNREELLELIRDSEQNE-------LIDADTLDMLEGVMDIADLRVRDIMIPRSQ-----MITLKRNQTLDECLDVI 95 (293)
T ss_pred cCCCcCHHHHHHHHHHhhhcc-------ccChhHHHHHHHHHHHHHhhHhhhcccHHH-----heeccccCCHHHHHHHH
Confidence 556777888888887655533 3334444455554 578999999999866 89999999999999999
Q ss_pred HhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEE
Q 028667 88 TQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPV 167 (205)
Q Consensus 88 ~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV 167 (205)
.+..++.+||+. ++...+.|++..+||++.+..+ .....+.++.+| .+.++++..+...++-|+..+.+...|
T Consensus 96 iesaHSRfPVi~-edkD~v~GIL~AKDLL~~~~~~---~~~F~i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIV 168 (293)
T COG4535 96 IESAHSRFPVIS-EDKDHVEGILLAKDLLPFMRSD---AEPFDIKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIV 168 (293)
T ss_pred HHhccccCCccc-CCchhhhhhhhHHHHHHHhcCC---cccccHHHhccc---ceecccchhHHHHHHHHHhhcCceEEE
Confidence 999999999996 5667899999999999874322 123568889888 789999999999999999999999999
Q ss_pred eeC-CeEEEEEeHHHHHHHHHhhhhHHHHH
Q 028667 168 IDD-KGMIGMVSIGDVVRAVVSEHREELNR 196 (205)
Q Consensus 168 v~~-~~~vGiIt~~dil~~l~~~~~~~~~~ 196 (205)
+|+ |-+-|.||..|+++.+.+...++++.
T Consensus 169 iDEfGgVsGLVTIEDiLEqIVGdIEDE~De 198 (293)
T COG4535 169 IDEFGGVSGLVTIEDILEQIVGDIEDEYDE 198 (293)
T ss_pred EeccCCeeeeEEHHHHHHHHhcccccccch
Confidence 999 99999999999999999887765543
No 88
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.51 E-value=5.8e-13 Score=92.95 Aligned_cols=106 Identities=36% Similarity=0.646 Sum_probs=92.3
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 150 (205)
++++.++.++.+|...|.+++...+||+ + .++++|++|.+|+++.+...... ..++.++|... +.++.+++++
T Consensus 9 ~~~v~~~~~~~~a~~~m~~~~~~~~~v~--~-~~~l~Giit~~di~~~~~~~~~~--~~~v~~v~~~~--~~~~~~~~~~ 81 (117)
T COG0517 9 VITVKPDTSVRDALLLMSENGVSAVPVV--D-DGKLVGIITERDILRALAAGGKR--LLPVKEVMTKP--VVTVDPDTPL 81 (117)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEe--e-CCEEEEEEEHHHHHHHHhccCCc--cccHHHhccCC--cEEECCCCCH
Confidence 8999999999999999999999999999 3 34799999999988876543321 12689999973 8999999999
Q ss_pred HHHHHHHHh-CCCCEEEEeeC-C-eEEEEEeHHHHH
Q 028667 151 LRAMQLMTD-NRIRHIPVIDD-K-GMIGMVSIGDVV 183 (205)
Q Consensus 151 ~~a~~~~~~-~~~~~~pVv~~-~-~~vGiIt~~dil 183 (205)
.++++.|.. ++...+||+++ + +++|++|..|++
T Consensus 82 ~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 82 EEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred HHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 999999999 79999999998 4 999999999873
No 89
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.48 E-value=6.1e-13 Score=95.94 Aligned_cols=98 Identities=23% Similarity=0.386 Sum_probs=78.8
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCC----------cCcccccccc---
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK----------STKVGDIMTE--- 137 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~----------~~~v~~im~~--- 137 (205)
+..+.+++++.+|++.|..++.+.+||+ |++|+++|+++..|+++.+........ ...+.++|.+
T Consensus 3 ~~~v~~~~~l~ea~~~m~~~~~~~~~Vv--D~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 80 (133)
T cd04592 3 YIKVSPTTTLKEALNLMLDEKQSCVLVV--DSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS 80 (133)
T ss_pred ceEECCCCCHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence 7899999999999999999999999999 888999999999998876643221100 0113446531
Q ss_pred ----CCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC
Q 028667 138 ----ENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD 170 (205)
Q Consensus 138 ----~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~ 170 (205)
..+++++++++++.+|++.|.+++++.+||+++
T Consensus 81 ~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 81 YGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred hcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 114889999999999999999999999999985
No 90
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.44 E-value=2.2e-12 Score=113.42 Aligned_cols=124 Identities=27% Similarity=0.364 Sum_probs=106.3
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC---------
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR--------- 124 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~--------- 124 (205)
.+|+++|.++ ++++++++++.+|++.|.+++.+.+||+ |++|+++|+|+..|+.+.+.....
T Consensus 68 ~~V~dim~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~ 138 (546)
T PRK14869 68 PQVRDLEIDK-------PVTVSPDTSLKEAWNLMDENNVKTLPVV--DEEGKLLGLVSLSDLARAYMDILDPEILSKSPT 138 (546)
T ss_pred CcHHHhcCCC-------CcEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCC
Confidence 6899999976 8999999999999999999999999999 888999999999998875443110
Q ss_pred -------------------------------------------------------------------------C------
Q 028667 125 -------------------------------------------------------------------------S------ 125 (205)
Q Consensus 125 -------------------------------------------------------------------------~------ 125 (205)
.
T Consensus 139 t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~ 218 (546)
T PRK14869 139 SLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVL 218 (546)
T ss_pred CHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHH
Confidence 0
Q ss_pred ------------------------CCcCccccccc-cCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeH
Q 028667 126 ------------------------SKSTKVGDIMT-EENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSI 179 (205)
Q Consensus 126 ------------------------~~~~~v~~im~-~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~ 179 (205)
....+++++|+ ++ +.++++++++.++.+.|.+++...+||+|+ |+++|+||+
T Consensus 219 ~la~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~--~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~ 296 (546)
T PRK14869 219 ELAKENGVTVISTPYDTFTTARLINQSIPVSYIMTTED--LVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISR 296 (546)
T ss_pred HHHHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCC--cEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEH
Confidence 01246778898 54 999999999999999999999999999996 999999999
Q ss_pred HHHHHHHHh
Q 028667 180 GDVVRAVVS 188 (205)
Q Consensus 180 ~dil~~l~~ 188 (205)
.|+++...+
T Consensus 297 ~dl~~~~~~ 305 (546)
T PRK14869 297 YHLLSPVRK 305 (546)
T ss_pred HHhhccccC
Confidence 999986553
No 91
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.35 E-value=3.3e-12 Score=103.75 Aligned_cols=137 Identities=18% Similarity=0.311 Sum_probs=116.2
Q ss_pred cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCc
Q 028667 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK 130 (205)
Q Consensus 51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~ 130 (205)
++.++|.|+|.+..+ +..++.+++.+++.+.+....+..+|+.. |+-++.+|++..+++++.+..... .....
T Consensus 197 Le~~tV~DIMvpR~~-----i~~id~d~~~e~iv~ql~~s~HtRiplyr-~~~DnIiGvlh~r~llr~l~e~~~-~~k~d 269 (423)
T COG4536 197 LENLTVSDIMVPRNE-----IIGIDIDDPWEEIVRQLLHSPHTRIPLYR-DDLDNIIGVLHVRDLLRLLNEKNE-FTKED 269 (423)
T ss_pred cccceeeeeeccccc-----eeeecCCCCHHHHHHHHhhCCCCceeeec-CChhHhhhhhhHHHHHHHhhccCc-ccHhH
Confidence 689999999999755 88999999999999999999999999996 566779999999998887654432 33344
Q ss_pred cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhhhHHHHHH
Q 028667 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEHREELNRL 197 (205)
Q Consensus 131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~~~~~~~l 197 (205)
+..+..+ |+.+++.+++.+-+..|.+++-+...|+|+ |.+.|+||.+||++.+.+...+.+...
T Consensus 270 ~~~~a~e---pyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~ 334 (423)
T COG4536 270 ILRAADE---PYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTL 334 (423)
T ss_pred HHHHhcC---CeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccCccc
Confidence 4444455 999999999999999999999999999999 999999999999999998877554443
No 92
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.23 E-value=6.9e-11 Score=72.26 Aligned_cols=56 Identities=27% Similarity=0.504 Sum_probs=52.2
Q ss_pred HhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (205)
Q Consensus 56 v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~ 120 (205)
|+++|.++ ++++++++++.++.+.|.+++.+.+||+ |++|+++|+|+.+|+++.+.
T Consensus 1 v~~~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~--d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPP-------PITVSPDDSLEEALEIMRKNGISRLPVV--DEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSS-------SEEEETTSBHHHHHHHHHHHTSSEEEEE--STTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCC-------CEEEcCcCcHHHHHHHHHHcCCcEEEEE--ecCCEEEEEEEHHHHHhhhh
Confidence 68899986 9999999999999999999999999999 89999999999999988653
No 93
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.20 E-value=7.8e-11 Score=72.02 Aligned_cols=55 Identities=42% Similarity=0.758 Sum_probs=51.2
Q ss_pred cccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667 131 VGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV 187 (205)
Q Consensus 131 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~ 187 (205)
++++|++. ++++++++++.++++.|.+++.+.+||+|+ |+++|+||.+|+++++.
T Consensus 1 v~~~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPP--PITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSS--SEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCC--CEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 46889884 999999999999999999999999999986 99999999999999875
No 94
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.10 E-value=2.8e-09 Score=89.06 Aligned_cols=107 Identities=22% Similarity=0.408 Sum_probs=91.1
Q ss_pred eEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHH
Q 028667 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVL 151 (205)
Q Consensus 72 ~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~ 151 (205)
....++.+..++.+.|...+...++|+ ++++++.|+++.+++..... ....+.+.+.+. ..++++++++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~ 322 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVV--DRQNKLVGVVDVESIKQARK------KAQGLQDVLIDD--IYTVDAGTLLR 322 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEE--cCCCCEEEEEeHHHHHHHhh------cCCchhhhhccC--CceECCCCcHH
Confidence 455667789999999999999999999 88999999999999764321 223577777764 88999999999
Q ss_pred HHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667 152 RAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE 189 (205)
Q Consensus 152 ~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~ 189 (205)
+++..|.+++.+ +||+++ |+++|+|++.++++.+...
T Consensus 323 ~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 323 ETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred HHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 999999999999 999996 9999999999999998754
No 95
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=2.7e-09 Score=90.13 Aligned_cols=105 Identities=15% Similarity=0.244 Sum_probs=89.3
Q ss_pred eCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHH
Q 028667 74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRA 153 (205)
Q Consensus 74 v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a 153 (205)
..++.+..+++..|...+.+.++|+ |++++++|+++..++.+.. . ....+.+.+.+. ..++++++++.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~-~-----~~~~~~~~~~~~--~~~~~~~~~~~~~ 359 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVI--ERGNKFVGAVSIDSLKTAL-T-----QQQGLDAALIDA--PLAVDAQTPLSEL 359 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEE--cCCCcEEEEEeHHHHHhhh-h-----cCCchhhhhccC--CceeCCCCCHHHH
Confidence 4467788999999999999999999 8999999999999975432 1 123577777664 8899999999999
Q ss_pred HHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667 154 MQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE 189 (205)
Q Consensus 154 ~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~ 189 (205)
+..+..+..+ +||+|+ |+++|+|+..++++.+...
T Consensus 360 ~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 360 LSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred HHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 9999998877 999996 9999999999999998653
No 96
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.09 E-value=1.7e-09 Score=90.71 Aligned_cols=117 Identities=18% Similarity=0.309 Sum_probs=94.3
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCc-cccccc----cCCceEEEc
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK-VGDIMT----EENKLITVS 145 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~-v~~im~----~~~~~~~v~ 145 (205)
+..+..++++.+|++.|...+.+.+||+ +..|+.+|.++..|.........-...... ++.... ...+++++.
T Consensus 239 i~~i~~~~~v~~al~~m~~~~is~lpvV--~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~ 316 (381)
T KOG1764|consen 239 IASISEDTPVIEALKIMSERRISALPVV--DENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCR 316 (381)
T ss_pred heeecCCCcHHHHHHHHHhcCcCcceEE--cCCCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEe
Confidence 7889999999999999999999999999 888888999999996544332221111222 222211 112479999
Q ss_pred CCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhh
Q 028667 146 PDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSE 189 (205)
Q Consensus 146 ~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~ 189 (205)
+++++.+++..|.+++++++.|+++ |.++|+||..|++..+...
T Consensus 317 ~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 317 PTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred ecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 9999999999999999999999998 9999999999999998743
No 97
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.01 E-value=8.7e-10 Score=90.60 Aligned_cols=110 Identities=22% Similarity=0.334 Sum_probs=96.2
Q ss_pred CceEeCCCchHHHHHHHHHhcCCCeEEEEec-CCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCC
Q 028667 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKP-GEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDT 148 (205)
Q Consensus 70 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~ 148 (205)
+++.++|+.++.++++....+++..+||.++ --.++++|+||.+|+ .++ ......++++|+++ +++.+++.
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~-----~~~~~~~~~vmt~~--~~~~~~gi 188 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFL-----EDNSLLVSDVMTKN--PVTGAQGI 188 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhh-----hcccchhhhhcccc--cccccccc
Confidence 4889999999999999999999999999942 123689999999995 544 23467899999997 79999999
Q ss_pred cHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667 149 KVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV 187 (205)
Q Consensus 149 ~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~ 187 (205)
++.++-+++.++.-+.+||+|+ |+++.+|+++|+.+...
T Consensus 189 ~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~ 228 (503)
T KOG2550|consen 189 TLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRD 228 (503)
T ss_pred cHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcC
Confidence 9999999999999999999998 99999999999988643
No 98
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.88 E-value=1e-09 Score=94.33 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=95.9
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v 131 (205)
.+.+++++|.+. ++++++++++.++++.|.+++...+||+ |++|+++|+|+.+|++..+.. ...
T Consensus 193 ~~~~v~~im~~~-------~~~v~~~~~~~eal~~m~~~~~~~lpVV--D~~g~lvGiIt~~Dil~~l~~-------~~~ 256 (449)
T TIGR00400 193 PEEILSSIMRSS-------VFSIVGVNDQEEVARLIQKYDFLAVPVV--DNEGRLVGIVTVDDIIDVIQS-------EAT 256 (449)
T ss_pred CCCcHHHHhCCC-------CeeECCCCCHHHHHHHHHHcCCCEEeEE--cCCCeEEEEEEHHHHHHHHHh-------hhH
Confidence 456799999986 8899999999999999999999999999 889999999999999876532 234
Q ss_pred ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhhh
Q 028667 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEH 190 (205)
Q Consensus 132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~~ 190 (205)
+++|+.. ..+..+++.+.+++..|.+++..|++|+ .+.|+++ ..++..+.+..
T Consensus 257 ed~~~~~--gv~~~~~~~l~~~~~~~~~~R~~wL~v~---~~~~~~t-~~ii~~f~~~l 309 (449)
T TIGR00400 257 EDFYMIA--AVKPLDDSYFDTSILVMAKNRIIWLLVL---LVSSTFT-ATIISNYEDLL 309 (449)
T ss_pred HHHHHhc--CCCCCcchhhhchHHHHHHhccchHHHH---HHHHHHH-HHHHHHHHHHH
Confidence 7888763 4444456788999999999999999885 6778888 77777765443
No 99
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.87 E-value=4e-09 Score=90.82 Aligned_cols=128 Identities=18% Similarity=0.266 Sum_probs=104.5
Q ss_pred cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEec---CCCCceEEEEehHHHHHHHHHc----C
Q 028667 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP---GEQKSVAGIITERDYLRKIIVQ----G 123 (205)
Q Consensus 51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~---d~~~~~~G~v~~~dll~~~~~~----~ 123 (205)
+++++++|+|+++ +..+..-..+..+.+.++...+..+||+|. ++.+++.|+|-++.++..+..+ .
T Consensus 579 mr~L~a~ev~~~p-------vi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~ 651 (762)
T KOG0474|consen 579 MRNLTAGEVMSKP-------VICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEE 651 (762)
T ss_pred hhhhhHhhhccCC-------eEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhcc
Confidence 5789999999996 899999999999999999999999999952 1226789999999977544211 0
Q ss_pred -CC--------------------------------CCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC
Q 028667 124 -RS--------------------------------SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD 170 (205)
Q Consensus 124 -~~--------------------------------~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~ 170 (205)
.. ..-.++..+|.+. |.++++++++..+..+|+.-++.++.|++.
T Consensus 652 ~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~s--PytV~~~mSl~k~~~lFR~lGLRhLlVv~~ 729 (762)
T KOG0474|consen 652 SRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPS--PYTVPETMSLAKAFILFRQLGLRHLLVVPK 729 (762)
T ss_pred CccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCC--CcccCcccchHHHHHHHHHhcceeEEEecC
Confidence 00 0013566778886 999999999999999999999999999997
Q ss_pred -CeEEEEEeHHHHHHHHH
Q 028667 171 -KGMIGMVSIGDVVRAVV 187 (205)
Q Consensus 171 -~~~vGiIt~~dil~~l~ 187 (205)
+.++|++|++|+...-.
T Consensus 730 ~~~~~gilTR~D~~~~~~ 747 (762)
T KOG0474|consen 730 TNRVVGILTRKDLARYRI 747 (762)
T ss_pred CCceeEEEehhhhhhHHH
Confidence 88999999999986543
No 100
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.75 E-value=5e-08 Score=70.67 Aligned_cols=76 Identities=26% Similarity=0.493 Sum_probs=63.3
Q ss_pred ehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhhh
Q 028667 111 TERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEH 190 (205)
Q Consensus 111 ~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~~ 190 (205)
+.+.+++++..... ....+..+|+. +++++++++++.++..+|..+|++.+||+++|+++|-||-.++.+.+.+..
T Consensus 49 t~k~Il~aL~e~e~--~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~ 124 (187)
T COG3620 49 TVKRILEALEEAEK--TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGM 124 (187)
T ss_pred HHHHHHHHHHHhhc--ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccc
Confidence 34455555543322 35678899998 499999999999999999999999999999999999999999999997764
No 101
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.64 E-value=1.2e-08 Score=89.81 Aligned_cols=143 Identities=20% Similarity=0.278 Sum_probs=105.2
Q ss_pred CCcccccccccccccccccccccccccHhHHhh-hcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceE
Q 028667 29 MLRPVVSSRFESVSSARMEEHGFESTTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVA 107 (205)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~m~-~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~ 107 (205)
...+.+.+.+.++...+... ...+|+++|. ++ ++++++++++.++.+.|.+++.+.+||+ |++|+++
T Consensus 224 ~~i~ii~t~~dt~~t~~~l~---~~~~V~~iM~~~~-------~~~~~~~~~~~~~~~~m~~~~~~~~PVv--d~~g~lv 291 (546)
T PRK14869 224 NGVTVISTPYDTFTTARLIN---QSIPVSYIMTTED-------LVTFSKDDYLEDVKEVMLKSRYRSYPVV--DEDGKVV 291 (546)
T ss_pred CCCeEEEecccHHHHHHHhh---cCCCHHHhccCCC-------cEEECCCCcHHHHHHHHHhcCCCceEEE--cCCCCEE
Confidence 35566777777666655543 3578999999 65 8999999999999999999999999999 8899999
Q ss_pred EEEehHHHHHHHHH------c--------CCC-C------CcCccccccccCCceEEE---cCCCcHHHHHHHHHhCCCC
Q 028667 108 GIITERDYLRKIIV------Q--------GRS-S------KSTKVGDIMTEENKLITV---SPDTKVLRAMQLMTDNRIR 163 (205)
Q Consensus 108 G~v~~~dll~~~~~------~--------~~~-~------~~~~v~~im~~~~~~~~v---~~~~~l~~a~~~~~~~~~~ 163 (205)
|+|+..|++..... . +.. . ..-+++++|... ++.+ +...+..-+.++|.+.++.
T Consensus 292 Giit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~--pi~~~~~~~gst~tiv~~~~~~~~i~ 369 (546)
T PRK14869 292 GVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSN--PIFFRNEPVGSTSTIVARMYRENGIE 369 (546)
T ss_pred EEEEHHHhhccccCceEEEcCccccccccchhhceEEEEecCCccCCCCCCC--CcEEEeeeeeeHHHHHHHHHHHcCCC
Confidence 99999998863321 0 000 0 011345566553 4333 4456777889999999988
Q ss_pred EEEEeeCCeEEEEEeHHHHHHH
Q 028667 164 HIPVIDDKGMIGMVSIGDVVRA 185 (205)
Q Consensus 164 ~~pVv~~~~~vGiIt~~dil~~ 185 (205)
..|++....+.|+++-+..++.
T Consensus 370 ~~~~ia~~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 370 PSPEIAGLLLAAILSDTLLFKS 391 (546)
T ss_pred CCHHHHHHHHHHHHHHhcCccC
Confidence 8888776678888888777764
No 102
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.59 E-value=1.6e-06 Score=75.18 Aligned_cols=114 Identities=18% Similarity=0.269 Sum_probs=93.7
Q ss_pred ceEeCC-CchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC----------------------CCC
Q 028667 71 WLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR----------------------SSK 127 (205)
Q Consensus 71 ~~~v~~-~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~----------------------~~~ 127 (205)
...++. ++++.+...+|.+..++.+||+-+.+..+++|+|.++++.-.+...+. ...
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~ 637 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS 637 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence 444444 489999999999999999999965677889999999998876652210 012
Q ss_pred cCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHH
Q 028667 128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAV 186 (205)
Q Consensus 128 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l 186 (205)
...++++|... |.++...++.+.+.++|++-+.....|.++|++.|+||++|++...
T Consensus 638 ~~~lk~il~~t--p~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 638 RLDLKDILDMT--PFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCLRHT 694 (696)
T ss_pred CcCceeeccCC--cccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHHHhh
Confidence 23577888875 9999999999999999999999999999999999999999999865
No 103
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.57 E-value=1.9e-07 Score=72.73 Aligned_cols=59 Identities=32% Similarity=0.558 Sum_probs=55.8
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~ 119 (205)
-..+|.++|.++ ++++..++.+.+|+++|..++...+.|+ |.+|+++|+||+.|++.++
T Consensus 232 ~~~kV~~~M~k~-------vitI~eDe~i~dAir~M~~~nVGRLlV~--ds~gkpvGiITrTDIL~~i 290 (294)
T COG2524 232 LDAKVSDYMRKN-------VITINEDEDIYDAIRLMNKNNVGRLLVT--DSNGKPVGIITRTDILTRI 290 (294)
T ss_pred ccccHHHHhccC-------CceEcCchhHHHHHHHHHhcCcceEEEE--ccCCcEEEEEehHHHHHHh
Confidence 468999999997 9999999999999999999999999999 8999999999999999865
No 104
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.52 E-value=2.7e-07 Score=63.78 Aligned_cols=56 Identities=20% Similarity=0.307 Sum_probs=50.5
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
..++.++|... +.++.+++++.++++.|.+++.+.+||+ |++|+++|+||.+|+++
T Consensus 55 ~~~v~~~~~~~-------~~~v~~~~~l~~al~~m~~~~~~~lpVv--d~~~~~~Giit~~di~~ 110 (111)
T cd04603 55 TLKVCEVYIVP-------VPIVYCDSKVTDLLRIFRETEPPVVAVV--DKEGKLVGTIYERELLR 110 (111)
T ss_pred ccChhheeecC-------CcEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCeEEEEEEhHHhhc
Confidence 35699999765 8899999999999999999999999999 77899999999999764
No 105
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.48 E-value=5.1e-07 Score=62.67 Aligned_cols=56 Identities=21% Similarity=0.383 Sum_probs=51.3
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll 116 (205)
...++.++|..+ ++++.+++++.++++.|.+++...+||+ +++|+++|+|+.+|++
T Consensus 57 ~~~~v~~~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~Gvi~~~dl~ 112 (114)
T cd04619 57 CTAPVENVMTRA-------VVSCRPGDLLHDVWQVMKQRGLKNIPVV--DENARPLGVLNARDAL 112 (114)
T ss_pred ccCCHHHHhcCC-------CeeECCCCCHHHHHHHHHHcCCCeEEEE--CCCCcEEEEEEhHhhc
Confidence 356799999876 8999999999999999999999999999 7889999999999975
No 106
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.44 E-value=5.8e-07 Score=62.67 Aligned_cols=54 Identities=30% Similarity=0.437 Sum_probs=50.1
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll 116 (205)
.+++++|.+. +..+.+++++.++++.|.+.+.+.+||+ |++|+++|+|+..++.
T Consensus 58 ~~v~dim~~~-------~~~v~~~~~l~~a~~~~~~~~~~~lpVv--d~~~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINRK-------PVTARPNDPLREALNLMHEHNIRTLPVV--DDDGTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCCC-------CCEECCcCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHhh
Confidence 6799999876 8899999999999999999999999999 8889999999999964
No 107
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.40 E-value=7.8e-07 Score=62.02 Aligned_cols=54 Identities=28% Similarity=0.596 Sum_probs=49.3
Q ss_pred CccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHH
Q 028667 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVR 184 (205)
Q Consensus 129 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~ 184 (205)
.++.++|.+. +.++++++++.++++.|.+++...+||+++ |+++|+|+..|+.+
T Consensus 58 ~~v~dim~~~--~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRK--PVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCC--CCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 5689999875 889999999999999999999999999986 89999999999864
No 108
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.37 E-value=4.8e-07 Score=71.96 Aligned_cols=60 Identities=30% Similarity=0.607 Sum_probs=54.7
Q ss_pred CCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHH
Q 028667 126 SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVV 187 (205)
Q Consensus 126 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~ 187 (205)
.......++|.++ +++++.++++.+|++.|.+|++..+||+|+ .+++|+|+++|+++...
T Consensus 242 ~~~LtcadIMSrd--Vvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~ 302 (382)
T COG3448 242 MGELTCADIMSRD--VVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHAR 302 (382)
T ss_pred hccccHHHhcCcc--ceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccC
Confidence 3467889999996 999999999999999999999999999998 68999999999998544
No 109
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.37 E-value=4.5e-06 Score=70.22 Aligned_cols=119 Identities=24% Similarity=0.395 Sum_probs=96.5
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCC-----cCccccccccC-CceEEE
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK-----STKVGDIMTEE-NKLITV 144 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~-----~~~v~~im~~~-~~~~~v 144 (205)
++.+.|..++.++...+.+++++++||.+ .+.+.++.++|.+.+++.+........ ..++.++-... ..+..+
T Consensus 164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d-~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i 242 (381)
T KOG1764|consen 164 FVSISPESSLLDAVLLLIKSRIHRVPVID-PETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASI 242 (381)
T ss_pred ceeecCcHHHHHHHHHHHhCCccceeeec-ccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheee
Confidence 48999999999999999999999999994 377899999999999987765443221 22333332211 138889
Q ss_pred cCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhh
Q 028667 145 SPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEH 190 (205)
Q Consensus 145 ~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~ 190 (205)
..++++.+|++.|...++..+||++. |+.+|.++..|+........
T Consensus 243 ~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~ 289 (381)
T KOG1764|consen 243 SEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGT 289 (381)
T ss_pred cCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCc
Confidence 99999999999999999999999997 77899999999999887554
No 110
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.35 E-value=1.9e-06 Score=59.45 Aligned_cols=55 Identities=16% Similarity=0.299 Sum_probs=50.2
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll 116 (205)
..++.++|.+. +.++.+++++.++++.|.+++.+.+||+ +++|+++|+|+.+|++
T Consensus 57 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~di~ 111 (113)
T cd04607 57 DDPVSEVMNRN-------PITAKVGSSREEILALMRERSIRHLPIL--DEEGRVVGLATLDDLL 111 (113)
T ss_pred CCCHHHhhcCC-------CEEEcCCCCHHHHHHHHHHCCCCEEEEE--CCCCCEEEEEEhHHhc
Confidence 35799999876 8899999999999999999999999999 7889999999999975
No 111
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.32 E-value=2e-06 Score=60.26 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=51.3
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
...+++++|... +.++.+++++.++++.|.+.+.+.+||+ +++|+++|+|+..|+++
T Consensus 67 ~~~~i~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~Vv--~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPP-------VVTVRPDTPIAELVPLLADGGHHHVPVV--DEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCC-------CeeeCCCCcHHHHHHHHHhcCCCceeEE--cCCCCEEEEEEhHHhhc
Confidence 345799999875 8999999999999999999999999999 78899999999999764
No 112
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.31 E-value=2.9e-06 Score=58.44 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=51.1
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
...++.++|.+. +.++.+++++.++++.|..++...+||+ +++++++|+|+..|+++
T Consensus 57 ~~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~iG~it~~di~~ 113 (114)
T cd04604 57 LTLPVADVMTRN-------PKTIDPDALAAEALELMEENKITALPVV--DDNGRPVGVLHIHDLLR 113 (114)
T ss_pred ccCCHHHhhccC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCCEEEEEEHHHhhc
Confidence 335799999886 8899999999999999999999999999 77899999999999763
No 113
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.31 E-value=1.7e-06 Score=60.33 Aligned_cols=59 Identities=24% Similarity=0.333 Sum_probs=50.1
Q ss_pred cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC---CceEEEEehHHHH
Q 028667 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYL 116 (205)
Q Consensus 51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~---~~~~G~v~~~dll 116 (205)
+...+++++|.+... ++++.+++++.++++.|.+++.+.+||+ +++ |+++|+|+..+++
T Consensus 55 ~~~~~~~~~~~~~~~-----~~~v~~~~~l~~~~~~~~~~~~~~lpVv--d~~~~~~~l~Gvit~~~l~ 116 (118)
T cd04617 55 LQKVPVGVIMTRMPN-----ITTTTPEESVLEAAKKLIEHQVDSLPVV--EKVDEGLEVIGRITKTNIT 116 (118)
T ss_pred ccCCCHHHHhCCCCC-----cEEECCCCcHHHHHHHHHHcCCCEeeEE--eCCCccceEEEEEEhhhee
Confidence 346778999975111 7899999999999999999999999999 555 7999999999975
No 114
>PRK11573 hypothetical protein; Provisional
Probab=98.30 E-value=4.4e-06 Score=71.15 Aligned_cols=71 Identities=18% Similarity=0.332 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC--CeEEEEEeHHHHHHHHH
Q 028667 113 RDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD--KGMIGMVSIGDVVRAVV 187 (205)
Q Consensus 113 ~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~--~~~vGiIt~~dil~~l~ 187 (205)
++++..++ ...+.+++++|+|+.++..++.++++.++++.+.+++++++||+++ +.++|+|..+|++..+.
T Consensus 175 ~~mi~~vl----~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~ 247 (413)
T PRK11573 175 QDMLLSVL----DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT 247 (413)
T ss_pred HHHHHHHh----ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhh
Confidence 34444444 4567899999999889999999999999999999999999999986 78999999999997654
No 115
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.30 E-value=2.4e-06 Score=59.07 Aligned_cols=56 Identities=16% Similarity=0.341 Sum_probs=49.4
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCC--chHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTD--DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~--~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
..++.++|.+. ++++.++ .++.++++.|.+++...+||+ +++|+++|+|+.+++++
T Consensus 57 ~~~i~~~~~~~-------~~~v~~~~~~~l~~a~~~~~~~~~~~~pVv--d~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQP-------VVTLQESEIQDIFTALSLFRQHQIRHLPVL--DDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCCC-------cEEEecccccCHHHHHHHHHHhCCceEEEE--cCCCCEEEEEEhHHhhc
Confidence 46789999875 7888887 789999999999999999999 78899999999999764
No 116
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.29 E-value=2.6e-06 Score=58.47 Aligned_cols=56 Identities=29% Similarity=0.406 Sum_probs=50.9
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
+.+++++|.+. +..+.+++++.++++.|...+...+||+ +++|+++|+|+..++++
T Consensus 52 ~~~v~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~dll~ 107 (109)
T cd04606 52 DTPVSDIMDTD-------VISVSADDDQEEVARLFEKYDLLALPVV--DEEGRLVGIITVDDVID 107 (109)
T ss_pred cchHHHHhCCC-------CeEEcCCCCHHHHHHHHHHcCCceeeeE--CCCCcEEEEEEhHHhhh
Confidence 45799999875 8899999999999999999999999999 78899999999999875
No 117
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.29 E-value=3e-06 Score=58.33 Aligned_cols=58 Identities=24% Similarity=0.456 Sum_probs=51.7
Q ss_pred cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
+...++.++|.+. +.++.+++++.++++.|.+++...+||+ +++|+++|+++..++++
T Consensus 55 ~~~~~i~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 55 LKDAKVREVMNSP-------VITIDANDSIAKARWLMSNNNISRLPVL--DDKGKVGGIVTEDDILR 112 (113)
T ss_pred hcCCcHHHhccCC-------ceEECCCCcHHHHHHHHHHcCCCeeeEE--CCCCeEEEEEEHHHhhc
Confidence 4557899999875 8899999999999999999999999999 78899999999999763
No 118
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.28 E-value=3.3e-06 Score=57.83 Aligned_cols=57 Identities=25% Similarity=0.365 Sum_probs=51.3
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
...++.++|... +.++.+++++.++.+.|.+++...+||+ +++|+++|+++..++++
T Consensus 51 ~~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~di~~ 107 (108)
T cd04596 51 PDTTIEKVMTKN-------PITVNPKTSVASVAHMMIWEGIEMLPVV--DDNKKLLGIISRQDVLK 107 (108)
T ss_pred ccccHHHHhcCC-------CeEECCCCCHHHHHHHHHHcCCCeeeEE--cCCCCEEEEEEHHHhhc
Confidence 346799999875 8899999999999999999999999999 88899999999999763
No 119
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.28 E-value=7.2e-06 Score=66.76 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=70.9
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcc-c
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV-G 132 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v-~ 132 (205)
.++.++|++ +.++++++++.++++.|++++.+.+||+ |+.|.++|+||..|++..+...-....+..- .
T Consensus 133 ~~l~~l~r~--------~~~V~e~~~l~~~L~~m~~~~~~~a~Vv--De~G~viGiVTleDIle~ivGei~de~d~~~~~ 202 (292)
T PRK15094 133 FSMDKVLRQ--------AVVVPESKRVDRMLKEFRSQRYHMAIVI--DEFGGVSGLVTIEDILELIVGEIEDEYDEEDDI 202 (292)
T ss_pred CCHHHHcCC--------CcCcCCCCcHHHHHHHHHhcCCEEEEEE--eCCCCEEEEeEHHHHHHHHhCCCcccccccccc
Confidence 457888876 6689999999999999999999999999 8889999999999999987643211111111 1
Q ss_pred cccccCCceEEEcCCCcHHHHHHHHH
Q 028667 133 DIMTEENKLITVSPDTKVLRAMQLMT 158 (205)
Q Consensus 133 ~im~~~~~~~~v~~~~~l~~a~~~~~ 158 (205)
.+-...+.-+.++..+++.+..+.+.
T Consensus 203 ~i~~~~~~~~~v~G~~~l~dl~~~l~ 228 (292)
T PRK15094 203 DFRQLSRHTWTVRALASIEDFNEAFG 228 (292)
T ss_pred ccEEeCCCeEEEEeccCHHHHHHHhC
Confidence 12221113688999999998887763
No 120
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.28 E-value=3.2e-06 Score=58.81 Aligned_cols=56 Identities=32% Similarity=0.479 Sum_probs=50.7
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
..++.++|.+. +.++.+++++.++++.|.+.+.+.+||+ +++|+++|+|+..|+++
T Consensus 66 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTRD-------PITVSPDASVEEAAELMLERKISGLPVV--DDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccCC-------CeEeCCCCcHHHHHHHHHHcCCCceeEE--CCCCcEEEEEEHHHhhh
Confidence 46788999875 8999999999999999999999999999 77799999999999764
No 121
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.27 E-value=3.2e-06 Score=58.51 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=50.0
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
...++.++|... ++++++++++.++++.|.+.+...+||+ ++ |+++|+|+..|+++
T Consensus 58 ~~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTKP-------LISVSPDMDIKYCARLMERTNIRRAPVV--EN-NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcCC-------CeeECCCCCHHHHHHHHHHcCCCEeeEe--eC-CEEEEEEEHHHhhc
Confidence 346799999775 8999999999999999999999999999 66 99999999999763
No 122
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.25 E-value=2.3e-06 Score=58.02 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=46.2
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHH
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLR 117 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~ 117 (205)
.+..|+..... +.++.+++++.+|++.|.+++.+.+||+ +++ |+++|+|+.+|+++
T Consensus 41 vt~~Dl~~~~~------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~~giit~~d~~~ 97 (98)
T cd04618 41 LTITDFILILR------LVSIHPERSLFDAALLLLKNKIHRLPVI--DPSTGTGLYILTSRRILK 97 (98)
T ss_pred EEHHHHhhhee------eEEeCCCCcHHHHHHHHHHCCCCEeeEE--ECCCCCceEEeehhhhhc
Confidence 45555554320 5789999999999999999999999999 666 89999999999764
No 123
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.24 E-value=5.1e-06 Score=58.74 Aligned_cols=51 Identities=24% Similarity=0.588 Sum_probs=45.8
Q ss_pred ceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHhhh
Q 028667 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVSEH 190 (205)
Q Consensus 140 ~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~~~ 190 (205)
++.++++++++.++++.|.+++...+||+++ |+++|+|+..++++.+....
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~ 54 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGK 54 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhc
Confidence 4888999999999999999999999999987 89999999999998766543
No 124
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.24 E-value=4.6e-06 Score=56.78 Aligned_cols=56 Identities=27% Similarity=0.472 Sum_probs=50.2
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
..+++++|... +.++.+++++.++++.|.+++...+||+ +++|+++|+++..++++
T Consensus 51 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSKD-------LVVAVPEMDIMDAARVMFRTGISKLPVV--DENNNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCCC-------CeEECCCCCHHHHHHHHHHhCCCeEeEE--CCCCeEEEEEEHHHhhc
Confidence 35699999775 8899999999999999999999999999 78899999999999764
No 125
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.24 E-value=5e-06 Score=58.09 Aligned_cols=49 Identities=20% Similarity=0.501 Sum_probs=44.8
Q ss_pred ceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS 188 (205)
Q Consensus 140 ~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~ 188 (205)
++.++++++++.+|++.|.+++.+.+||+++ |+++|+++..|++..+.+
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~ 51 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKE 51 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhc
Confidence 4789999999999999999999999999986 899999999999987643
No 126
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.22 E-value=4.6e-06 Score=57.34 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=49.3
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
..++.++|... +..+.+++++.++++.|.+++...+||+ + +|+++|+|+.+++++
T Consensus 57 ~~~v~~~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNPE-------PIVASPDDSIDEVRRLMVERHLRYLPVL--D-GGTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCCC-------CeEECCCCCHHHHHHHHHHcCCCeeeEE--E-CCEEEEEEEHHHhhc
Confidence 46799999875 8899999999999999999999999999 5 589999999999764
No 127
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.21 E-value=1.2e-05 Score=70.06 Aligned_cols=113 Identities=15% Similarity=0.271 Sum_probs=78.7
Q ss_pred cccHhHHhh-hcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCC---CCCc
Q 028667 53 STTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR---SSKS 128 (205)
Q Consensus 53 ~~~v~d~m~-~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~---~~~~ 128 (205)
..++.++|. .. ++++.+++++.++++.|.+++.+.+||+ |++|+++|+|+.+|+++.+..... ....
T Consensus 146 ~~~V~dim~~~~-------~v~v~~~~sl~eal~~m~~~~~~~lpVV--De~g~lvGiIT~~DLl~~~~~p~a~~d~~g~ 216 (486)
T PRK05567 146 SQPVSEVMTKER-------LVTVPEGTTLEEALELLHEHRIEKLPVV--DDNGRLKGLITVKDIEKAEEFPNACKDEQGR 216 (486)
T ss_pred CCcHHHHcCCCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEhHHhhhhhhCCCcccccCCC
Confidence 357899997 33 8999999999999999999999999999 899999999999998876432110 0011
Q ss_pred CccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEee--CCeEEEEEeHHHHHH
Q 028667 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID--DKGMIGMVSIGDVVR 184 (205)
Q Consensus 129 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~--~~~~vGiIt~~dil~ 184 (205)
..+...|.. ++ .+ .+..+.|.+.+++.+ |+| +++..|+++.-+.++
T Consensus 217 l~V~aai~~-------~~-~~-~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~ 264 (486)
T PRK05567 217 LRVGAAVGV-------GA-DN-EERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIK 264 (486)
T ss_pred EEEEeeccc-------Cc-ch-HHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHH
Confidence 123333333 22 22 666777778889855 556 367766665444443
No 128
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.21 E-value=1.5e-05 Score=67.82 Aligned_cols=94 Identities=12% Similarity=0.187 Sum_probs=71.5
Q ss_pred cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccc
Q 028667 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134 (205)
Q Consensus 55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~i 134 (205)
+++++|++ +.++++++++.++++.|++++.+.++|+ |+.|...|+||.+|++..+...-.+..+ .-.+.
T Consensus 256 ~l~~~~~~--------~~~Vpe~~~l~~ll~~m~~~~~~~aiVv--DE~G~~~GiVT~eDileeivgei~de~d-~~~~~ 324 (408)
T TIGR03520 256 DWQSLLRE--------PYFVPENKKLDDLLRDFQEKKNHLAIVV--DEYGGTSGLVTLEDIIEEIVGDISDEFD-DEDLI 324 (408)
T ss_pred CHHHHcCC--------CeEeCCCCcHHHHHHHHHhcCceEEEEE--cCCCCEEEEEEHHHHHHHHhCCCCCcCC-cCccc
Confidence 45666654 8899999999999999999999999999 8999999999999999987643211111 11222
Q ss_pred ccc-CCceEEEcCCCcHHHHHHHHHh
Q 028667 135 MTE-ENKLITVSPDTKVLRAMQLMTD 159 (205)
Q Consensus 135 m~~-~~~~~~v~~~~~l~~a~~~~~~ 159 (205)
+.. .+..+.++...++.++.+.|.-
T Consensus 325 i~~~~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 325 YSKIDDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred eEEeCCCeEEEEeccCHHHHHHHhCC
Confidence 322 1237889999999999988844
No 129
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.21 E-value=5.6e-06 Score=56.29 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=49.1
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
.+++++|.+. +..+.+++++.++++.|.+++...+||+ +++|+++|+|+.+++++
T Consensus 51 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 51 GCCGDHAEPF-------KVTVSVDDDLRIVLSRMFAHDMSWLPCV--DEDGRYVGEVTQRSIAD 105 (106)
T ss_pred cchhhhcccC-------CEEECCCCCHHHHHHHHHHCCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence 3588888775 7889999999999999999999999999 78899999999999763
No 130
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.21 E-value=6.6e-06 Score=57.43 Aligned_cols=57 Identities=30% Similarity=0.571 Sum_probs=51.0
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
...++.++|... +.++.+++++.++++.|.+.+.+.+||+ +++|+++|+++..|++.
T Consensus 65 ~~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKTD-------VLTVTPDTPLREAAEIMVENKIGCLPVV--DDKGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCCC-------CeEeCCCCcHHHHHHHHHHcCCCeEEEE--cCCCCEEEEEEHHHhhc
Confidence 456899999875 8899999999999999999999999999 77789999999999763
No 131
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.20 E-value=6e-06 Score=56.52 Aligned_cols=57 Identities=26% Similarity=0.527 Sum_probs=50.7
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
...++.++|.+. ++++.+++++.++++.|.+.+...+||+ +++|+++|+|+.+++++
T Consensus 54 ~~~~v~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSSP-------LLTVPADTSLYDARQLMREHGIRHLVVV--DDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCCC-------ceEECCCCCHHHHHHHHHHcCCeEEEEE--CCCCcEEEEEEhHHhhc
Confidence 356799999875 8899999999999999999999999999 77899999999999763
No 132
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.20 E-value=5.5e-06 Score=56.52 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=50.3
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
..++.++|... +..+++++++.++++.|.+.+...+||+ +++|+++|+++.+++++
T Consensus 53 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~vv--~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 53 AKSLEDIMLED-------VFTVQPDASLRDVLGLVLKRGPKYVPVV--DEDGKLVGLITRSSLVD 108 (109)
T ss_pred CCcHhHhhcCC-------ceEECCCCcHHHHHHHHHHcCCceeeEE--CCCCeEEEEEehHHhhc
Confidence 35688999875 8999999999999999999999999999 88899999999999763
No 133
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.19 E-value=6e-06 Score=57.64 Aligned_cols=57 Identities=33% Similarity=0.545 Sum_probs=50.9
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
...++.++|... +..+.+++++.++++.|.+++.+.+||+ +++|+++|+++..++++
T Consensus 65 ~~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMSTP-------VYSVTPDDSIATAVELMLEHDIGRLPVV--NEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcCC-------CeeECCCCCHHHHHHHHHHcCCCeeeEE--cCCCcEEEEEEhHHhhc
Confidence 356788999765 8999999999999999999999999999 77899999999999764
No 134
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.19 E-value=7.5e-06 Score=46.85 Aligned_cols=46 Identities=37% Similarity=0.793 Sum_probs=42.1
Q ss_pred eEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHH
Q 028667 141 LITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAV 186 (205)
Q Consensus 141 ~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l 186 (205)
+.++++++++.++++.|...+...+||+++ ++++|+++..++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 677899999999999999999999999987 8999999999998764
No 135
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.19 E-value=5.1e-06 Score=57.14 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=49.4
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll 116 (205)
.++.++|.+. +.++.+++++.++++.|.+++...+||+ +++++++|+|+..|++
T Consensus 58 ~~v~~i~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--~~~~~~~Gvvs~~dl~ 111 (113)
T cd04587 58 TLVERVMTPN-------PVCATSDTPVLEALHLMVQGKFRHLPVV--DKSGQVVGLLDVTKLT 111 (113)
T ss_pred CCHHHhcCCC-------CeEEcCCCCHHHHHHHHHHcCCCcccEE--CCCCCEEEEEEHHHhc
Confidence 6799999875 8899999999999999999999999999 7779999999999975
No 136
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.19 E-value=6.6e-06 Score=57.67 Aligned_cols=56 Identities=34% Similarity=0.557 Sum_probs=50.3
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
..++.++|.+. ++++++++++.++++.|.+.+...+||+ +++|+++|+|+..|+++
T Consensus 69 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRN-------VITITPDDSIKDAAELMLEKRVGGLPVV--DDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCC-------ceEeCCCCcHHHHHHHHHHcCCceEEEE--cCCCcEEEEEEHHHhhc
Confidence 45788998875 8999999999999999999999999999 77799999999999764
No 137
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.18 E-value=3.8e-06 Score=58.03 Aligned_cols=58 Identities=26% Similarity=0.472 Sum_probs=49.6
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
..++.++|.+... ++.+.+++++.++++.|.+++.+.+||+ +++|+++|+++.+++++
T Consensus 56 ~~~v~~~~~~~~~-----~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAK-----LVTVLSEESLAEVLKLLEEQGLDELAVV--EDSGQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhccccc-----ceEECCCCcHHHHHHHHHHCCCCeeEEE--cCCCcEEEEEeccceec
Confidence 4678899975321 5689999999999999999999999999 77789999999999753
No 138
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.18 E-value=6.9e-06 Score=56.34 Aligned_cols=55 Identities=31% Similarity=0.430 Sum_probs=49.3
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
..+++++|.+. +.++.++.++.++++.|.+.+.+.+||+ ++ |+++|+|+.+++++
T Consensus 58 ~~~~~~~~~~~-------~~~v~~~~~~~~~l~~~~~~~~~~~~Vv--~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTRN-------VITVTPDDTVDEAMALMTERRFRHLPVV--DG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCCC-------cEEECCCCcHHHHHHHHHHcCCCEeEEE--eC-CEEEEEEEHHHhhc
Confidence 45799999775 8999999999999999999999999999 55 89999999999764
No 139
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.17 E-value=5.2e-06 Score=58.25 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=41.0
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY 115 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dl 115 (205)
+.++.+++++.+|++.|.+++.+.+||+ +++++++|+||.+|+
T Consensus 78 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~vGiit~~di 120 (123)
T cd04627 78 VISINGDQPLIDALHLMHNEGISSVAVV--DNQGNLIGNISVTDV 120 (123)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCceEEEE--CCCCcEEEEEeHHHh
Confidence 8899999999999999999999999999 888999999999995
No 140
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.17 E-value=7.1e-06 Score=56.27 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=49.5
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll 116 (205)
..++.++|... ++.+.+++++.++++.|.+++...+||+ +++|+++|+++..|+.
T Consensus 55 ~~~v~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~dl~ 109 (111)
T cd04639 55 DAPVRGVMRRD-------FPTVSPSATLDAVLRLMQQGGAPAVPVV--DGSGRLVGLVTLENVG 109 (111)
T ss_pred CCcHHHHhcCC-------CcEECCCCcHHHHHHHHHhcCCceeeEE--cCCCCEEEEEEHHHhh
Confidence 35789999765 8899999999999999999999999999 7779999999999975
No 141
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.17 E-value=7.3e-06 Score=58.87 Aligned_cols=55 Identities=31% Similarity=0.477 Sum_probs=49.4
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
..++.++|.+. +..+.+++++.++++.|.+++.+.+||+ ++ |+++|+|+..++++
T Consensus 80 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTEE-------IITVSPNDDVVDAAKLMLEANISGLPVV--DN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCCC-------CeEECCCCCHHHHHHHHHHcCCCEEEEE--eC-CEEEEEEEHHHHhh
Confidence 45799999875 8899999999999999999999999999 55 89999999999764
No 142
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.17 E-value=7.6e-06 Score=56.09 Aligned_cols=56 Identities=23% Similarity=0.433 Sum_probs=50.4
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
...++.++|.+. +..+.+++++.++++.|.+++.+.+||+ + +|+++|+|+..|+++
T Consensus 54 ~~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMSTD-------VVTVPPDTPLSEVQELMVEHDIGRVPVV--E-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcCC-------CEEECCCCcHHHHHHHHHHcCCCeeEEE--e-CCEEEEEEEhHHhhc
Confidence 457899999875 8899999999999999999999999999 6 789999999999763
No 143
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.16 E-value=9.6e-06 Score=46.38 Aligned_cols=46 Identities=28% Similarity=0.488 Sum_probs=41.5
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~ 118 (205)
+.++.+++++.++.+.|.+.+.+.+||+ +++++++|+++..++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVV--DEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEE--CCCCeEEEEEEHHHHHHh
Confidence 6788999999999999999999999999 777899999999997653
No 144
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.16 E-value=1.4e-05 Score=69.24 Aligned_cols=99 Identities=15% Similarity=0.252 Sum_probs=70.2
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcccc
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~ 133 (205)
.++.++|.++ ++++++++++.+|++.|.+++...+||+ |++++++|+|+.+|+++........ . .-+.
T Consensus 148 ~~V~diMt~~-------~itV~~d~sL~eAl~lM~~~~i~~LPVV--D~~g~lvGIIT~~DIl~~~~~~~~~--~-~~g~ 215 (479)
T PRK07807 148 TQVRDVMSTD-------LVTLPAGTDPREAFDLLEAARVKLAPVV--DADGRLVGVLTRTGALRATIYTPAV--D-AAGR 215 (479)
T ss_pred CCHHHhccCC-------ceEECCCCcHHHHHHHHHhcCCCEEEEE--cCCCeEEEEEEHHHHHHHhhCCchh--h-hhhc
Confidence 5699999876 9999999999999999999999999999 7889999999999988754321100 0 0011
Q ss_pred ccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEee
Q 028667 134 IMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID 169 (205)
Q Consensus 134 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~ 169 (205)
.+.. ....+ .....+..+.|.+.+.+.+ ++|
T Consensus 216 l~V~--aav~~--~~~~~~~a~~Lv~aGvd~i-~~D 246 (479)
T PRK07807 216 LRVA--AAVGI--NGDVAAKARALLEAGVDVL-VVD 246 (479)
T ss_pred cchH--hhhcc--ChhHHHHHHHHHHhCCCEE-EEe
Confidence 1111 12222 2245677777777888875 445
No 145
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.16 E-value=7.4e-06 Score=55.95 Aligned_cols=56 Identities=21% Similarity=0.430 Sum_probs=48.9
Q ss_pred cccHhHHhhhcCCCCCCCceEeCC-CchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~-~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
..++.++|... +..+.+ ++++.++++.|.+.+.+.+||+ +++|+++|+|+.+|+++
T Consensus 53 ~~~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTPE-------NLLTTVEGTSLEEALELLHEHKIEKLPVV--DDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhcccC-------ceEEecCCCCHHHHHHHHHHhCCCeeeEE--cCCCCEEEEEEhhhhhc
Confidence 46899999765 666676 9999999999999999999999 78899999999999764
No 146
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.16 E-value=6.8e-06 Score=56.86 Aligned_cols=55 Identities=16% Similarity=0.331 Sum_probs=48.0
Q ss_pred ccHhHHhhhcCCCCCCCceEeCC--CchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 54 TTISDILKAKGKGADGSWLWCTT--DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~--~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
.+++++|.+. +..+.. ++++.++++.|.+++...+||+ +++|+++|+|+..++++
T Consensus 57 ~~v~~~~~~~-------~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv--~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPR-------EVLVVAPTGITLEEANEILRESKKGKLPIV--NDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCC-------ceEEECCCCCCHHHHHHHHHhcCCCceeEE--CCCCeEEEEEEHHHhhc
Confidence 5689999876 566655 9999999999999999999999 88899999999999753
No 147
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.15 E-value=2.2e-05 Score=67.90 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=53.1
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~ 119 (205)
..++.++|.++ ++++++++++.+|+++|.+++...+||+ |++++++|+|+.+|+++..
T Consensus 145 ~~~V~dIMt~~-------litv~~~~sL~eAl~lM~~~~i~~LPVV--D~~g~LvGIIT~~DLl~~~ 202 (475)
T TIGR01303 145 FTQVRDIMSTD-------LVTAPADTEPRKAFDLLEHAPRDVAPLV--DADGTLAGILTRTGALRAT 202 (475)
T ss_pred CCCHHHHccCC-------ceEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHH
Confidence 35799999976 8999999999999999999999999999 8889999999999988754
No 148
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.14 E-value=8e-06 Score=56.00 Aligned_cols=55 Identities=29% Similarity=0.472 Sum_probs=49.5
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
..++.++|... ++.+.+++++.++++.|.+++.+.+||+ ++ |+++|+++.+|+++
T Consensus 56 ~~~i~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTAP-------PITIPPDATVFEALLLMLERGIHHLPVV--DD-GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCCC-------CeEECCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEHHHhhc
Confidence 46799999875 8999999999999999999999999999 55 89999999999763
No 149
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.14 E-value=2.2e-05 Score=68.31 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=53.4
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~ 118 (205)
.+.+|+++|.+... ++++.+++++.+|++.|.+++...+||+ |++++++|+||.+|+++.
T Consensus 159 ~~~~V~dIMt~~~~-----~itv~~d~~l~eAl~lM~e~~i~~LPVV--D~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 159 LDTKVKDFMTPFEK-----LVTANEGTTLKEANDIIWDHKLNTLPIV--DKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCCHHHHhCCCCC-----eEEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEhHHHHhc
Confidence 45789999996322 8899999999999999999999999999 888999999999998864
No 150
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.14 E-value=6.4e-06 Score=58.83 Aligned_cols=56 Identities=20% Similarity=0.375 Sum_probs=50.4
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
...++.++|.+. +..+.+++++.++++.|.+.+.+.+||+ + +|+++|+|+..|+++
T Consensus 79 ~~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~l~Vv--d-~g~~~Gvit~~di~~ 134 (135)
T cd04586 79 HGRKVADVMTRP-------VVTVGEDTPLAEVAELMEEHRIKRVPVV--R-GGRLVGIVSRADLLR 134 (135)
T ss_pred cCCCHHHHhCCC-------ceEeCCCCcHHHHHHHHHHcCCCccCEe--c-CCEEEEEEEhHhhhc
Confidence 346799999876 8999999999999999999999999999 7 899999999999763
No 151
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.14 E-value=8.1e-06 Score=56.46 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=49.3
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCC--CceEEEEehHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ--KSVAGIITERDYLR 117 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~--~~~~G~v~~~dll~ 117 (205)
..++.++|.+. ++++.+++++.++++.|.+++...+||+ +++ |+++|+|+..++++
T Consensus 57 ~~~~~~~~~~~-------~~~v~~~~~l~~~l~~~~~~~~~~~~Vv--d~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 57 PSAVDEVATPP-------LLTVHPDEPLAHALDRMASRGLRQLPVV--DRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred cccHHHhccCC-------ceEECCCCCHHHHHHHHHHcCCceeeEE--eCCCCCeEEEEEEhHHhhc
Confidence 34588888875 8999999999999999999999999999 665 89999999999764
No 152
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.14 E-value=1.1e-05 Score=55.24 Aligned_cols=55 Identities=35% Similarity=0.640 Sum_probs=49.5
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
.++.++|... +.++.++.++.++++.|.+.+...+||+ +++|+++|+|+..|+++
T Consensus 55 ~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTKD-------VITIDEDEQLYDAIRLMNKHNVGRLIVT--DDEGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcCC-------ceEECCCCCHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEEhHHhhc
Confidence 5788998765 8999999999999999999999999999 77799999999999763
No 153
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.13 E-value=7.1e-06 Score=56.50 Aligned_cols=55 Identities=29% Similarity=0.432 Sum_probs=49.3
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
..++.++|.+. +..+.+++++.++++.|.+++...+||+ ++ |+++|+|+..++++
T Consensus 59 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTTE-------VLTVSPDDSIVDLAQLMLKAKPKRYPVV--DD-GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhccC-------ceEECCCCcHHHHHHHHHHhCCCccCEE--EC-CEEEEEEEHHHHhc
Confidence 46799999875 8899999999999999999999999999 55 89999999999764
No 154
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.12 E-value=1.4e-05 Score=57.42 Aligned_cols=49 Identities=33% Similarity=0.564 Sum_probs=45.1
Q ss_pred ceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS 188 (205)
Q Consensus 140 ~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~ 188 (205)
++.++++++++.+|++.|.+.+...+||+|+ |+++|+|+..|+++.+..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence 4789999999999999999999999999997 899999999999998764
No 155
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.12 E-value=9.9e-06 Score=54.90 Aligned_cols=54 Identities=19% Similarity=0.347 Sum_probs=48.9
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll 116 (205)
...+.++|.+. +..+++++++.++++.|.+++...+||+ ++ |+++|+|+..+++
T Consensus 50 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~~l~ 103 (105)
T cd04599 50 NRLVADAMTRE-------VVTISPEASLLEAKRLMEEKKIERLPVL--RE-RKLVGIITKGTIA 103 (105)
T ss_pred cCCHHHHccCC-------CEEECCCCCHHHHHHHHHHcCCCEeeEE--EC-CEEEEEEEHHHhc
Confidence 45789999875 8899999999999999999999999999 65 9999999999975
No 156
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.12 E-value=1e-05 Score=55.64 Aligned_cols=55 Identities=33% Similarity=0.477 Sum_probs=49.5
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
.++.++|... +.++.+++++.++++.|...+.+.+||+ +++|+++|+++..|+++
T Consensus 58 ~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTRG-------VVTVTEDDDVDEAARLMREHQVRRLPVV--DDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccCC-------ccEECCCCCHHHHHHHHHHcCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence 3599999876 8899999999999999999999999999 77799999999999753
No 157
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.11 E-value=5.4e-06 Score=58.52 Aligned_cols=59 Identities=22% Similarity=0.337 Sum_probs=46.9
Q ss_pred ccccHhHHhhhcCCCCCCCceEe----CCCchHHHHHHHHHhcCCCeEEEEecCCC-CceEEEEehHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWC----TTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLR 117 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v----~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~-~~~~G~v~~~dll~ 117 (205)
...+++++|.+... .+.+ .+++++.++++.|.+++.+.+||+ |++ |+++|+|+.+|+++
T Consensus 62 ~~~~v~~im~~~~~-----~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVv--d~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKED-----LKALDLEELENASVGDVVETLKASGRQHALVV--DREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhh-----hccccHHHhccCcHHHHHHHHHHCCCceEEEE--ECCCCEEEEEEeHHHHhh
Confidence 45679999986410 1223 368899999999999999999999 665 79999999999764
No 158
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.11 E-value=7.5e-06 Score=57.05 Aligned_cols=56 Identities=32% Similarity=0.499 Sum_probs=50.0
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
...++.++|... +..+.+++++.++++.|.+.+.+.+||+ ++ |+++|+++..|+++
T Consensus 65 ~~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIMTRP-------VITIEPDTSVSDVASLMLENNIGGLPVV--DD-GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHccCC-------ceEECCCCcHHHHHHHHHHcCCCcccEE--EC-CEEEEEEEHHHhhc
Confidence 456899999775 8899999999999999999999999999 66 89999999999764
No 159
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.11 E-value=1e-05 Score=55.52 Aligned_cols=53 Identities=25% Similarity=0.384 Sum_probs=47.0
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll 116 (205)
..+.++|.+ +..+.+++++.++++.|.+++.+.+||+ +++|+++|+|+..|++
T Consensus 57 ~~~~~~~~~--------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~di~ 109 (111)
T cd04590 57 LDLRDLLRP--------PLFVPESTPLDDLLEEMRKERSHMAIVV--DEYGGTAGLVTLEDIL 109 (111)
T ss_pred CCHHHHhcC--------CeecCCCCcHHHHHHHHHhcCCcEEEEE--ECCCCEEEEeEHHHhh
Confidence 457777653 7889999999999999999999999999 7889999999999975
No 160
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.11 E-value=1.3e-05 Score=54.84 Aligned_cols=54 Identities=33% Similarity=0.505 Sum_probs=48.8
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll 116 (205)
.++.++|... +.++.+++++.++++.|.+++...+||+ +++|+++|+|+..+++
T Consensus 55 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~G~v~~~di~ 108 (110)
T cd04605 55 KSVEDIMTRN-------VITATPDEPIDVAARKMERHNISALPVV--DAENRVIGIITSEDIS 108 (110)
T ss_pred cCHHHhcCCC-------CeEECCCCcHHHHHHHHHHhCCCEEeEE--CCCCcEEEEEEHHHhh
Confidence 3588888765 8899999999999999999999999999 8889999999999975
No 161
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.11 E-value=9.3e-06 Score=55.73 Aligned_cols=54 Identities=22% Similarity=0.506 Sum_probs=48.6
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll 116 (205)
..++.++|.+. +.++.+++++.++++.|.+++...+||+ ++ |+++|+|+..|++
T Consensus 56 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~di~ 109 (111)
T cd04626 56 EKKVFNIVSQD-------VFYVNEEDTIDEALDIMREKQIGRLPVV--DD-NKLIGVVRTKDIL 109 (111)
T ss_pred cCcHHHHhcCC-------cEEEcCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEhHHhc
Confidence 35788999875 8899999999999999999999999999 66 8999999999975
No 162
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.10 E-value=1e-05 Score=57.48 Aligned_cols=54 Identities=28% Similarity=0.487 Sum_probs=48.8
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
.++.++|.+. ++.+.+++++.++.+.|.+.+.+.+||+ ++ |+++|+++..|+++
T Consensus 78 ~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 78 KKVEEIMTKK-------VITVDEDTTIEDVARIMSKKNIKRLPVV--DD-GKLVGIISRGDIIR 131 (132)
T ss_pred CCHHHhccCC-------ceEECCCCcHHHHHHHHHHCCCCeeEEE--EC-CEEEEEEEHHHhhc
Confidence 3789999875 8899999999999999999999999999 66 99999999999764
No 163
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.10 E-value=9.1e-06 Score=55.82 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=50.6
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCC-CCceEEEEehHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERDYLR 117 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~-~~~~~G~v~~~dll~ 117 (205)
..++.++|.+. +.++.+++++.++++.|.+.+.+.+||+ ++ .++++|+++..|++.
T Consensus 57 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTKP-------PVVVYPEDSLEDALKKFEDSDYEQLPVV--DDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccCC-------CcEEcCCCCHHHHHHHHhhCCccEeeEE--eCCCCEEEEEEEhHHhhc
Confidence 37899999886 8999999999999999999999999999 66 789999999999753
No 164
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.08 E-value=1.1e-05 Score=66.39 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=52.0
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
...+++++|.++ ++++.+++++.++++.|.+++...+||+ |++|+++|+|+..|+++
T Consensus 261 ~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~lvGvIt~~di~~ 317 (321)
T PRK11543 261 LTTPVNEAMTRG-------GTTLQAQSRAIDAKEILMKRKITAAPVV--DENGKLTGAINLQDFYQ 317 (321)
T ss_pred cCCcHHHhcCCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHh
Confidence 346799999986 8899999999999999999999999999 78889999999999875
No 165
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.08 E-value=1.4e-05 Score=55.77 Aligned_cols=55 Identities=27% Similarity=0.380 Sum_probs=49.6
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
.+++++|... ++.+.+++++.++++.|.+++...+||+ +++++++|+++..++++
T Consensus 67 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~vv--~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTRD-------PITVSPDTPVDEASKLLLENSISCLPVV--DENGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcCC-------CeeeCCCCcHHHHHHHHHHcCCCeEeEE--CCCCCEEEEEEHHHhhh
Confidence 4688888875 8999999999999999999999999999 78899999999999764
No 166
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.08 E-value=1.3e-05 Score=56.49 Aligned_cols=58 Identities=31% Similarity=0.537 Sum_probs=49.3
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
..++.++|..+ ++++.++.++.++++.|.+.+...+||++.+++|+++|+|+.+|+++
T Consensus 70 ~~~~~~~~~~~-------~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 70 DLPVYDAMSSP-------VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred cCcHHHHhcCC-------CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 45788999875 89999999999999999999889999983124689999999999763
No 167
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.07 E-value=1.6e-05 Score=54.64 Aligned_cols=56 Identities=29% Similarity=0.471 Sum_probs=50.1
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
..++.++|.+. ++.+.+++++.++++.|.+++...+||+ +++|+++|+++.+++++
T Consensus 56 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTRD-------LVTVDPDEPVAEAAKLMRKNNIRHHLVV--DKGGELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccCC-------CEEECCCCcHHHHHHHHHHcCccEEEEE--cCCCcEEEEEEHHHhcc
Confidence 45789999876 8899999999999999999889999999 77899999999999763
No 168
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.07 E-value=1.4e-05 Score=54.83 Aligned_cols=56 Identities=20% Similarity=0.416 Sum_probs=48.9
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
...++.++|.+. +..+.+++++.++++.|.+++...+||+ +++ +++|+|+.+|+++
T Consensus 56 ~~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMSTP-------LITIDPNASLNEAAKLMAKHGIKRLPVV--DDD-ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCCC-------cEEECCCCCHHHHHHHHHHcCCCeeEEe--eCC-EEEEEEEhhhhhc
Confidence 346799999775 8899999999999999999999999999 554 8999999999763
No 169
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.07 E-value=1.5e-05 Score=54.61 Aligned_cols=56 Identities=27% Similarity=0.429 Sum_probs=49.5
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
...++.++|.+. +..+++++++.++++.|.+++...+||+ ++ ++++|+|+..++++
T Consensus 55 ~~~~i~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATFP-------LITVDPDDFLFNALLLMTRHRIHRVVVR--EG-GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCCC-------cEEECCCCcHHHHHHHHHHhCccEEEEe--eC-CEEEEEEEhHHhhc
Confidence 346799999875 8899999999999999999999999999 54 89999999999763
No 170
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.06 E-value=9.3e-05 Score=64.57 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=54.6
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~ 120 (205)
...+|.++|.+... ++++.+++++.++++.|.+++...+||+ |++++++|+|+.+|+++...
T Consensus 161 ~~~~V~eIMt~~~~-----lvtv~~~~sL~eAl~~m~~~~~~~LPVV--D~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 161 RETKLSEVMTSDDD-----LVTAPAGIDLEEAEAVLKDSKKGKLPLV--NEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred cCCcHHHHhccCCC-----cEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHhh
Confidence 35679999987522 6799999999999999999999999999 88899999999999887654
No 171
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.06 E-value=1.9e-05 Score=54.03 Aligned_cols=55 Identities=29% Similarity=0.546 Sum_probs=49.3
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
.++.++|.+. +.++.+++++.++++.|.+++.+.+||+ +++++++|+|+..|+++
T Consensus 56 ~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTRD-------PVTASPDETLRDALKRMAERDIGRLPVV--DDSGRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccCC-------CeEECCCCCHHHHHHHHHhCCCCeeeEE--cCCCCEEEEEEHHHhhh
Confidence 3678888775 8999999999999999999999999999 77899999999999763
No 172
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.05 E-value=1.4e-05 Score=53.88 Aligned_cols=56 Identities=16% Similarity=0.367 Sum_probs=47.8
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
.+..+++... .+.++.+++++.++++.|.+++.+.+||+ +++|+++|+|+.+++++
T Consensus 40 v~~~dl~~~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--~~~~~~~Giit~~di~~ 95 (96)
T cd04614 40 ITERDLIAKS------EVVTATKRTTVSECAQKMKRNRIEQIPII--NGNDKLIGLLRDHDLLK 95 (96)
T ss_pred EEHHHHhcCC------CcEEecCCCCHHHHHHHHHHhCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence 4666666543 17889999999999999999999999999 77799999999999764
No 173
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.04 E-value=1.9e-05 Score=67.75 Aligned_cols=82 Identities=24% Similarity=0.480 Sum_probs=68.3
Q ss_pred EEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC--CeEEEEEeHHHHHH
Q 028667 107 AGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD--KGMIGMVSIGDVVR 184 (205)
Q Consensus 107 ~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~--~~~vGiIt~~dil~ 184 (205)
-|.++... +.++.+-....+.+++++|+|+.++..++.+.++.++.+.+.+++++++||+++ +.++|++..+|++.
T Consensus 186 ~g~~~~~E--~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~ 263 (429)
T COG1253 186 EGVLEEEE--REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLR 263 (429)
T ss_pred cCCcCHHH--HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHH
Confidence 46776555 223333335568899999999888999999999999999999999999999994 78999999999999
Q ss_pred HHHhhh
Q 028667 185 AVVSEH 190 (205)
Q Consensus 185 ~l~~~~ 190 (205)
.+....
T Consensus 264 ~~~~~~ 269 (429)
T COG1253 264 ALLDGQ 269 (429)
T ss_pred HHhcCc
Confidence 987663
No 174
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.04 E-value=1.4e-05 Score=66.04 Aligned_cols=57 Identities=18% Similarity=0.347 Sum_probs=51.5
Q ss_pred cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
+...+|+++|.+. +.++.+++++.++++.|.+++.+.+||+ + +++++|+|+..|+++
T Consensus 266 ~~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--~-~~~lvGiit~~dil~ 322 (326)
T PRK10892 266 LRQASIADVMTPG-------GIRVRPGILAVDALNLMQSRHITSVLVA--D-GDHLLGVLHMHDLLR 322 (326)
T ss_pred cccCCHHHhcCCC-------CEEECCCCCHHHHHHHHHHCCCcEEEEe--e-CCEEEEEEEhHHhHh
Confidence 3457899999986 8999999999999999999999999999 4 578999999999875
No 175
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.02 E-value=2.3e-05 Score=54.52 Aligned_cols=56 Identities=34% Similarity=0.470 Sum_probs=49.9
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
...++.++|.+. +..+.+++++.++++.|.+.+...+||+ ++ |+++|+++.+++++
T Consensus 65 ~~~~v~~~~~~~-------~~~i~~~~~l~~~~~~~~~~~~~~~~V~--~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 65 LKMPVKEIMTKD-------VITVHPLDTVEEAALLMREHRIGCLPVV--ED-GRLVGIITETDLLR 120 (121)
T ss_pred cCcCHHHHhhCC-------CeEECCCCcHHHHHHHHHHcCCCeEEEe--eC-CEEEEEEEHHHhhc
Confidence 456799999876 8899999999999999999999999999 55 89999999999763
No 176
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.02 E-value=1.6e-05 Score=56.10 Aligned_cols=45 Identities=24% Similarity=0.413 Sum_probs=42.1
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
+.++.+++++.++++.|.+++.+.+||+ +++++++|+|+..|+++
T Consensus 81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--d~~~~~~Giit~~dil~ 125 (126)
T cd04642 81 LITCTPSSTLKEVITKLVANKVHRVWVV--DEEGKPIGVITLTDIIS 125 (126)
T ss_pred CeEECCCCcHHHHHHHHHHhCCcEEEEE--CCCCCEEEEEEHHHHhc
Confidence 8899999999999999999999999999 77899999999999764
No 177
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.02 E-value=2.4e-05 Score=53.96 Aligned_cols=49 Identities=20% Similarity=0.399 Sum_probs=44.7
Q ss_pred ceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS 188 (205)
Q Consensus 140 ~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~ 188 (205)
+++++++++++.++++.|.+.+.+.+||+++ |+++|+++..|+++.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~ 51 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKG 51 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhc
Confidence 4788999999999999999999999999987 899999999999987753
No 178
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.01 E-value=2.7e-05 Score=53.03 Aligned_cols=50 Identities=26% Similarity=0.598 Sum_probs=45.2
Q ss_pred ceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhh
Q 028667 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSE 189 (205)
Q Consensus 140 ~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~ 189 (205)
++.++++++++.++.+.|.+.+.+++||+++|+++|+++..|+.+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~ 51 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEG 51 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhcc
Confidence 37889999999999999999999999999989999999999999986543
No 179
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.99 E-value=2e-05 Score=53.61 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=47.9
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
.++.++|.+. +.++.++.++.++++.|.+++...+||+ + +|+++|+++..|++.
T Consensus 50 ~~~~~~~~~~-------~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVRG-------IPYVRLTSTAEEAWEVMMKNKTRWCPVV--D-DGKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhcC-------CcEEcCCCCHHHHHHHHHHcCcceEEEE--E-CCEEEEEEEHHHhhc
Confidence 4578888765 8899999999999999999999999999 5 589999999999753
No 180
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.96 E-value=5.1e-05 Score=63.99 Aligned_cols=84 Identities=11% Similarity=0.179 Sum_probs=63.1
Q ss_pred cCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEee
Q 028667 90 HNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVID 169 (205)
Q Consensus 90 ~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~ 169 (205)
++...++|+ |. |+++..+.... ... .....+.+ +... ..++++++++.+++..+.+++.+ +||++
T Consensus 298 ~~~~~~~~~--~~-----~~~~~~~~~~~-~~~---~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 362 (382)
T TIGR03415 298 RRDTWLFTI--DK-----QVRRRDAKLPV-QAW---AAEQEVES-LEAA--PTVINPDTLMRDVLAARHRTGGA-ILLVE 362 (382)
T ss_pred cccceeEee--cc-----ceecccchHhH-hhc---ccccchhh-hccc--CcccCCCCcHHHHHHHHhcCCCC-eEEee
Confidence 677888999 54 88887774432 211 02234666 4443 78899999999999999988776 66778
Q ss_pred CCeEEEEEeHHHHHHHHHh
Q 028667 170 DKGMIGMVSIGDVVRAVVS 188 (205)
Q Consensus 170 ~~~~vGiIt~~dil~~l~~ 188 (205)
+|+++|+|++.++++.+.+
T Consensus 363 ~~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 363 NGRIVGVIGDDNIYHALLG 381 (382)
T ss_pred CCeEEEEEeHHHHHHHHhc
Confidence 8999999999999998753
No 181
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.92 E-value=3.3e-05 Score=66.64 Aligned_cols=86 Identities=15% Similarity=0.349 Sum_probs=64.5
Q ss_pred CCCCceEEEEehHHHHHH--HHHcCC-----CCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-Ce
Q 028667 101 GEQKSVAGIITERDYLRK--IIVQGR-----SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KG 172 (205)
Q Consensus 101 d~~~~~~G~v~~~dll~~--~~~~~~-----~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~ 172 (205)
|...++...+...+++.. +..... .....+++++|.+. +.++++++++.++++.|.+.+...+||+++ ++
T Consensus 300 d~g~~y~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~~--~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~ 377 (454)
T TIGR01137 300 DSIRNYMTKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLPA--PVTVHPTETVGDAIEILREYGFDQLPVVTEAGK 377 (454)
T ss_pred CCCccccCcccChHHHHhcCCcccccccHHHHhccCCHHHhCcCC--CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCe
Confidence 555667666555554432 111111 12356789999875 999999999999999999999999999987 89
Q ss_pred EEEEEeHHHHHHHHHh
Q 028667 173 MIGMVSIGDVVRAVVS 188 (205)
Q Consensus 173 ~vGiIt~~dil~~l~~ 188 (205)
++|+|+..|+++.+..
T Consensus 378 ~~Givt~~dl~~~~~~ 393 (454)
T TIGR01137 378 VLGSVTLRELLSALFA 393 (454)
T ss_pred EEEEEEHHHHHHHHhc
Confidence 9999999999987654
No 182
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.91 E-value=3.2e-05 Score=53.65 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=48.1
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCC---eEEEEecCCCCceEEEEehHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVG---ALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~---~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
...+++++|.+. +..+.+++++.++++.|.+++.. ..||+ +++|+++|+|+..++++
T Consensus 59 ~~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv--~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDPD-------PLIVEADTPLEEVSRLATGRDSQNLYDGFIV--TEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCCC-------cEEecCCCCHHHHHHHHHcCCcccccccEEE--eeCCeEEEEEEHHHHhc
Confidence 456899999876 88999999999999999887653 44688 67899999999999763
No 183
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.91 E-value=0.00013 Score=63.62 Aligned_cols=59 Identities=17% Similarity=0.338 Sum_probs=52.6
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~ 118 (205)
..+|+++|.+... +++++++.++.++.++|.+++...+||+ |++++++|+||.+|+++.
T Consensus 158 ~~~V~diMt~~~~-----lvtv~~~~sl~eAl~lm~e~~i~~LPVV--d~~g~liGIIT~~DIl~~ 216 (495)
T PTZ00314 158 STPVSEVMTPREK-----LVVGNTPISLEEANEVLRESRKGKLPIV--NDNGELVALVSRSDLKKN 216 (495)
T ss_pred CCCHHHhhCCcCC-----ceEeCCCCCHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEehHhhhc
Confidence 4679999987211 8999999999999999999999999999 889999999999998864
No 184
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.85 E-value=4.6e-05 Score=52.11 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=43.6
Q ss_pred HhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 59 ILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 59 ~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
+|.+. +.++++++++.++.+.|.+++...+||+ + +|+++|+|+..|+++
T Consensus 56 ~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~pVv--~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDPS-------PFTVSPRTSLEKVHQLFRKLGLRHLLVV--D-EGRLVGIITRKDLLK 104 (105)
T ss_pred hccCC-------CceECCCCcHHHHHHHHHHcCCCEEEEE--E-CCeEEEEEEhhhhhc
Confidence 66654 8899999999999999999999999999 3 688999999999764
No 185
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=97.85 E-value=1.1e-05 Score=66.29 Aligned_cols=107 Identities=17% Similarity=0.280 Sum_probs=79.7
Q ss_pred HHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCCC
Q 028667 84 VKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIR 163 (205)
Q Consensus 84 ~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~ 163 (205)
++-+.....+..++.. .+...+.|++.. .+.+|+|+|.+++++..++.+++.+++.+.+.+....
T Consensus 170 lR~~v~~~~~e~~~~~-~~rdmL~gvLDL--------------e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~Ht 234 (423)
T COG4536 170 LRTAVNESGSEGSVNK-IDRDMLLGVLDL--------------ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHT 234 (423)
T ss_pred HHHHHHHhhccccccc-ccHHHHhccccc--------------ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCC
Confidence 3334333344555531 244555555544 3468999999998999999999999999999999999
Q ss_pred EEEEeeC--CeEEEEEeHHHHHHHHHhhhhHHHHHHHhhhcCCC
Q 028667 164 HIPVIDD--KGMIGMVSIGDVVRAVVSEHREELNRLNAFIQGGY 205 (205)
Q Consensus 164 ~~pVv~~--~~~vGiIt~~dil~~l~~~~~~~~~~l~~~i~~~y 205 (205)
++||..+ +.++|++..+|+++++.+.-......+.....++|
T Consensus 235 Riplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epy 278 (423)
T COG4536 235 RIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPY 278 (423)
T ss_pred ceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCe
Confidence 9999976 68999999999999999876544555555545444
No 186
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=97.84 E-value=4.4e-05 Score=67.84 Aligned_cols=59 Identities=17% Similarity=0.385 Sum_probs=52.9
Q ss_pred cCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667 128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS 188 (205)
Q Consensus 128 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~ 188 (205)
..+++++|+++ +.++++++++.++.+.|.+++.+.+||+|+ ++++|+|+.+|+.+.+..
T Consensus 446 ~~~V~dim~~~--~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~ 505 (574)
T PRK01862 446 TTQMRELIQPA--QTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLD 505 (574)
T ss_pred hCcHHHHhcCC--CceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhc
Confidence 56899999885 889999999999999999999999999997 899999999999986543
No 187
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.79 E-value=7.8e-05 Score=53.91 Aligned_cols=55 Identities=27% Similarity=0.448 Sum_probs=49.0
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll 116 (205)
...++.++|.+. +.++.+++++.+++..|.+.+...+||+ ++ ++++|+++.+|++
T Consensus 87 ~~~~v~~~~~~~-------~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--~~-~~~~Gvvt~~dl~ 141 (143)
T cd04634 87 GKMKVRDIMTKK-------VITISPDASIEDAAELMVRHKIKRLPVV--ED-GRLVGIVTRGDII 141 (143)
T ss_pred hcCCHHHHcCCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHhh
Confidence 346788899875 8999999999999999999999999999 55 8999999999976
No 188
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.79 E-value=9.4e-05 Score=50.01 Aligned_cols=53 Identities=26% Similarity=0.484 Sum_probs=47.4
Q ss_pred HhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 56 v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
+.++|... +..+.+++++.++.+.|.+.+...+||+ +++++++|+++..++++
T Consensus 60 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTRD-------VVTVSPDTSLEEAAELMLEHGIRRLPVV--DDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcCC-------ceecCCCcCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEHHHhhc
Confidence 66778765 8889999999999999999999999999 78899999999999753
No 189
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.75 E-value=8.2e-05 Score=51.27 Aligned_cols=52 Identities=23% Similarity=0.403 Sum_probs=47.4
Q ss_pred cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHh-cCCCeEEEEecCCCC-ceEEEEehHHH
Q 028667 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ-HNVGALVVVKPGEQK-SVAGIITERDY 115 (205)
Q Consensus 55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~-~~~~~~~Vv~~d~~~-~~~G~v~~~dl 115 (205)
++.++|... +.++.++.++.++.+.|.+ ++...+||+ ++++ +++|+++..|+
T Consensus 63 ~v~~v~~~~-------~~~~~~~~~~~~~~~~m~~~~~~~~lpVv--~~~~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTKP-------VVTVDPDTPLEEALELMVERHKIRRLPVV--DDDGGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccCC-------cEEECCCCCHHHHHHHHHHHcCcCeEEEE--ECCCCeEEEEEEHHHc
Confidence 589999975 8999999999999999999 799999999 6775 99999999985
No 190
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.70 E-value=0.00013 Score=49.51 Aligned_cols=54 Identities=26% Similarity=0.374 Sum_probs=47.0
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
..+.++|... +.++.+++++.+++..|.+++...+||+ ++ |+++|+++..++++
T Consensus 52 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~-~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTRD-------PPTVSPDDDVKEAAKLMVENNIRRVPVV--DD-GKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcCC-------CceECCCCCHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHhhc
Confidence 4678888765 7889999999999999999999999999 53 79999999999753
No 191
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.67 E-value=0.00013 Score=62.97 Aligned_cols=58 Identities=19% Similarity=0.382 Sum_probs=52.8
Q ss_pred cccHhHHhhh-cCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667 53 STTISDILKA-KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (205)
Q Consensus 53 ~~~v~d~m~~-~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~ 119 (205)
..++.++|.+ + +++++++.++.++++.|.+++...+||+ |++|+++|+||.+|+++..
T Consensus 142 ~~~V~dvm~~~~-------~~~V~~~~sl~eal~~m~~~~~~~lpVV--De~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 142 GKPVSEVMTREE-------VITVPEGIDLEEALKVLHEHRIEKLPVV--DKNGELVGLITMKDIVKRR 200 (450)
T ss_pred CCCHHHhhCCCC-------CEEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEhHHhhhcc
Confidence 4679999984 4 8999999999999999999999999999 8999999999999988753
No 192
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.66 E-value=0.00017 Score=58.96 Aligned_cols=61 Identities=25% Similarity=0.328 Sum_probs=56.7
Q ss_pred cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (205)
Q Consensus 51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~ 120 (205)
..+.++..+|.+. |.++.+.+|+..+.+.|.=.++.-+||+ +++.+++|+||++|+++.+.
T Consensus 246 ~~~t~ieKVMtkn-------p~tv~~~tsVAsvaq~MiwE~iem~PVv--~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 246 KPSTTIEKVMTKN-------PITVRAKTSVASVAQMMIWEGIEMLPVV--DSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred CCCccHHHHhccC-------CeeecccchHHHHHHHHHhccceeeeEE--cCCceEEEEEEHHHHHHHHH
Confidence 4678899999987 9999999999999999999999999999 89999999999999998774
No 193
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.59 E-value=0.00019 Score=62.10 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=53.9
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~ 119 (205)
...+|+++|+.. ++.++.++-+.+|.-.|.+++++++||+ ++|+++|+|+..||++..
T Consensus 212 ~~~~V~evmT~p-------~~svd~~~~~feAml~m~r~~I~hl~V~---e~gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 212 KTQKVSEVMTSP-------VISVDRGDFLFEAMLMMLRNRIKHLPVT---EDGQPLGILTLTDILRLF 269 (610)
T ss_pred cccchhhhhccC-------ceeecCcchHHHHHHHHHHhCCceeeee---cCCeeeEEeeHHHHHHhh
Confidence 578999999986 9999999999999999999999999999 789999999999998754
No 194
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.55 E-value=0.00022 Score=57.17 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=45.9
Q ss_pred cccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEe
Q 028667 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~ 111 (205)
..+++++|.+. ++++.+++++.+|++.|.+.+...+||+ +++|+++|+|+
T Consensus 219 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~l~GvI~ 268 (268)
T TIGR00393 219 KSEVRDFMTLG-------PKTFKLDALLLEALEFLERRKITSLVVV--DDHNKVLGVLH 268 (268)
T ss_pred cCcHHHhCCCC-------CeEECCCCcHHHHHHHHHHcCCcEEEEE--CCCCeEEEEEC
Confidence 46799999876 8899999999999999999999999999 88899999984
No 195
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.39 E-value=0.00036 Score=59.83 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=55.2
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~ 119 (205)
.+.+++++|.+. ++.+.+++..+++++.+.+++.-.+||| |++++++|+||..|++..+
T Consensus 194 ~~~~i~~im~~~-------~~~V~~~~dqeevA~~~~~ydl~a~PVV--d~~~~LiG~itiDDiidvi 252 (451)
T COG2239 194 PDELLKDLMEDD-------VVSVLADDDQEEVARLFEKYDLLAVPVV--DEDNRLIGIITIDDIIDVI 252 (451)
T ss_pred cHhHHHHHhccc-------ceeecccCCHHHHHHHHHHhCCeecceE--CCCCceeeeeeHHHHHHHH
Confidence 578899999997 8999999999999999999999999999 8999999999999988654
No 196
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.31 E-value=0.00092 Score=56.14 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=49.0
Q ss_pred cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (205)
Q Consensus 55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~ 120 (205)
.+.+.+.+. +.++.+++++.+++..+.+++.. +||+ |++|+++|+|+..+++..+.
T Consensus 303 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 303 GLQDVLIDD-------IYTVDAGTLLRETVRKVLKAGIK-VPVV--DEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred chhhhhccC-------CceECCCCcHHHHHHHHHhCCCC-EEEE--CCCCcEEEEEEHHHHHHHHH
Confidence 466666654 78899999999999999999888 9999 89999999999999888764
No 197
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0011 Score=54.00 Aligned_cols=110 Identities=18% Similarity=0.305 Sum_probs=79.7
Q ss_pred cccHhHHhhhcCCCCCCCceE-eCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcc
Q 028667 53 STTISDILKAKGKGADGSWLW-CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131 (205)
Q Consensus 53 ~~~v~d~m~~~~~~~~~~~~~-v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v 131 (205)
-.+.+++|.+. + +.. -.+...-..+...+.......+.++ +..++++|+++..+....
T Consensus 273 VltA~~IM~~~-~-----~~~~~~~~~~~~~al~~~~~~~~~~~~~~--~~~~~~~g~v~~~~~~~~------------- 331 (386)
T COG4175 273 VLTAKDIMRRP-D-----LLIRKTPGDGPRVALKLLRDEGREYGYAV--DRGNKFVGVVSIDSLVKA------------- 331 (386)
T ss_pred eeeHHHhhccc-c-----cccccccccccchhhhhhhhccchhhHHH--hccCceeeEEeccchhcc-------------
Confidence 35778888852 1 222 2222333457777777777788888 777789999998885431
Q ss_pred ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEeHHHHHHHHHh
Q 028667 132 GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVSIGDVVRAVVS 188 (205)
Q Consensus 132 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt~~dil~~l~~ 188 (205)
.+.+ ++.+++.++++.+.+......+.+ +||+|+ ++++|+|++..++.++..
T Consensus 332 --~~~~--~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 --ALID--DVLTVDADTPLSEILARIRQAPCP-VAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred --cccc--cccccCccchHHHHHHHHhcCCCc-eeEEcCCCcEEEEecHHHHHHHHhc
Confidence 3344 388999999999999888887765 557776 999999999999998864
No 198
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=97.15 E-value=7.7e-05 Score=57.82 Aligned_cols=97 Identities=14% Similarity=0.297 Sum_probs=73.6
Q ss_pred chHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHH
Q 028667 78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLM 157 (205)
Q Consensus 78 ~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~ 157 (205)
.+..+.+.++++.+...+.=- |.-..+-|++.. .+..++++|.|+....++..+.++.+++..+
T Consensus 32 knr~eLl~liRdse~n~LiD~--dt~~mlEGvm~i--------------adl~vrDiMIPRSQM~~l~~~~~l~~~l~~i 95 (293)
T COG4535 32 KNREELLELIRDSEQNELIDA--DTLDMLEGVMDI--------------ADLRVRDIMIPRSQMITLKRNQTLDECLDVI 95 (293)
T ss_pred cCHHHHHHHHHHhhhccccCh--hHHHHHHHHHHH--------------HHhhHhhhcccHHHheeccccCCHHHHHHHH
Confidence 466788888887655443322 222222222222 3457899999987899999999999999999
Q ss_pred HhCCCCEEEEeeC--CeEEEEEeHHHHHHHHHhhh
Q 028667 158 TDNRIRHIPVIDD--KGMIGMVSIGDVVRAVVSEH 190 (205)
Q Consensus 158 ~~~~~~~~pVv~~--~~~vGiIt~~dil~~l~~~~ 190 (205)
.++..++.||+.+ +.+.|++-.+|++..++...
T Consensus 96 iesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~ 130 (293)
T COG4535 96 IESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA 130 (293)
T ss_pred HHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc
Confidence 9999999999976 68999999999999987553
No 199
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.0026 Score=56.96 Aligned_cols=62 Identities=13% Similarity=0.220 Sum_probs=54.1
Q ss_pred cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHH
Q 028667 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (205)
Q Consensus 51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~ 119 (205)
...+.|+++|.++ +.++..+.|.+|..+.+.....+.+|+|++.++.-++|.|.++.|...+
T Consensus 585 ~h~v~VE~iMV~d-------v~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll 646 (931)
T KOG0476|consen 585 VHTVKVEHIMVTD-------VKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL 646 (931)
T ss_pred eeEEEeeeecccc-------ceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence 4678999999998 9999999999999999998779999999765667889999999976544
No 200
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=0.0033 Score=53.46 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=49.1
Q ss_pred cHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcC
Q 028667 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG 123 (205)
Q Consensus 55 ~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~ 123 (205)
.+.+.+.+. ..++.+++++.+++..+...... +||+ |++|+++|+|+..++++.+...+
T Consensus 338 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~g~~~~~~~~~~~~~~~ 396 (400)
T PRK10070 338 GLDAALIDA-------PLAVDAQTPLSELLSHVGQAPCA-VPVV--DEDQQYVGIISKGMLLRALDREG 396 (400)
T ss_pred chhhhhccC-------CceeCCCCCHHHHHHHHHhCCCc-EEEE--CCCCcEEEEEEHHHHHHHHHhcC
Confidence 455566554 78999999999999999987666 9999 89999999999999988775443
No 201
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.70 E-value=0.016 Score=51.06 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=48.3
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
+...-+|++. |+++.+++++..+..+|++-+.+++.|+ +...+.+|++|++|+.+
T Consensus 690 vDl~p~~n~s-------PytV~~~mSl~k~~~lFR~lGLRhLlVv--~~~~~~~gilTR~D~~~ 744 (762)
T KOG0474|consen 690 VDLHPFMNPS-------PYTVPETMSLAKAFILFRQLGLRHLLVV--PKTNRVVGILTRKDLAR 744 (762)
T ss_pred cccccccCCC-------CcccCcccchHHHHHHHHHhcceeEEEe--cCCCceeEEEehhhhhh
Confidence 4455667776 8999999999999999999999999999 77788899999999874
No 202
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=95.54 E-value=0.09 Score=44.32 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=51.1
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
....+.++|.+. +++.+.+.++.++.+++.+++-..+||+ +++|.++.++++.||.+
T Consensus 169 ~~~~~~~vmt~~-------~~~~~~gi~l~~~neiL~~~kkGkl~iv--~~~gelva~~~rtDl~k 225 (503)
T KOG2550|consen 169 NSLLVSDVMTKN-------PVTGAQGITLKEANEILKKIKKGKLPVV--DDKGELVAMLSRTDLMK 225 (503)
T ss_pred ccchhhhhcccc-------cccccccccHHHHHHHHHhhhcCCccee--ccCCceeeeeehhhhhh
Confidence 346678888886 7888999999999999999999999999 89999999999999765
No 203
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=95.08 E-value=0.029 Score=49.04 Aligned_cols=130 Identities=14% Similarity=0.165 Sum_probs=92.8
Q ss_pred cccccHhHHhhhcCCCCCCCceEeCCCchHH-HHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcC
Q 028667 51 FESTTISDILKAKGKGADGSWLWCTTDDTVY-DAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST 129 (205)
Q Consensus 51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~ 129 (205)
+....++++|.+-.+ +..++.+..+. +......+++++.+||.+. +....+|..-...++... .........
T Consensus 201 l~ek~~~evmtpi~~-----~f~l~~n~~l~~~~~~~i~~~g~sripv~~~-~~~~~i~~~L~~~~~~~~-~~~~~~~~~ 273 (498)
T KOG2118|consen 201 LTEKLVGEVMTPIED-----VFALDANTKLDRETVGEIVKHGYSRIPVYEQ-EPKNKIGGLLVMNLLRLL-QVEVPLEPL 273 (498)
T ss_pred HHHHHHHHhccchhh-----heeeccccccchHHHhhHhhcCcceeeeccC-cccchhhHHHHhhhhhhh-ccccccccc
Confidence 578899999998654 77788888887 5555666899999999952 333334443333333332 211133456
Q ss_pred ccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHHhhh
Q 028667 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEH 190 (205)
Q Consensus 130 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~~~~ 190 (205)
++...+... ..-++.++++.+.++.|.....+.+.|.+...-+|+++..++ ....++.
T Consensus 274 ~v~~~~~~~--l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~~~~~l~~~-~~~~~ev 331 (498)
T KOG2118|consen 274 PVSESALLR--LPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDIFVLTLEDL-EEVVKEV 331 (498)
T ss_pred cchhhhccc--cccCCCcccHHHHHHHHhhhhceeEEEecCCcceeeEeccch-hhhccee
Confidence 777887774 899999999999999999988888877776778999999988 5544443
No 204
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.44 E-value=0.12 Score=43.86 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=39.0
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~ 120 (205)
..++++++++.+++..+.+... -++|+ |+ |+++|+|+..+++..+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~--~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 335 PTVINPDTLMRDVLAARHRTGG-AILLV--EN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred CcccCCCCcHHHHHHHHhcCCC-CeEEe--eC-CeEEEEEeHHHHHHHHh
Confidence 7789999999999998887654 47888 65 99999999999987653
No 205
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.14 E-value=0.22 Score=44.24 Aligned_cols=57 Identities=23% Similarity=0.301 Sum_probs=50.7
Q ss_pred ccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHH
Q 028667 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (205)
Q Consensus 52 ~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~ 118 (205)
+....+++|... +.++...++..-+.+++++-+.+.+.|. .+|+++|+||.+|+++.
T Consensus 637 ~~~~lk~il~~t-------p~tv~d~tp~~~v~~~F~~lg~~~~~v~---~~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 637 SRLDLKDILDMT-------PFTVTDLTPMETVVDLFRKLGLRQILVT---KNGILLGIITKKDCLRH 693 (696)
T ss_pred CCcCceeeccCC-------cccccccCcHHHHHHHHHhhCceEEEEc---cCCeeEeeeehHHHHHh
Confidence 556788888876 8899999999999999999999999996 79999999999998864
No 206
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.54 E-value=0.5 Score=37.83 Aligned_cols=84 Identities=14% Similarity=0.146 Sum_probs=53.1
Q ss_pred CCCceEEEEehHHHH--------HHHHHcC----CCCCcCccccccccCC--ceEEEcCCCcHHHHHHHHHhCCCCEEEE
Q 028667 102 EQKSVAGIITERDYL--------RKIIVQG----RSSKSTKVGDIMTEEN--KLITVSPDTKVLRAMQLMTDNRIRHIPV 167 (205)
Q Consensus 102 ~~~~~~G~v~~~dll--------~~~~~~~----~~~~~~~v~~im~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV 167 (205)
++|+++=+=+..+++ ..+...+ .......+.+.|.... .--.+.......+++.-+...+...+||
T Consensus 210 ~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~V 289 (309)
T COG1125 210 DAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPV 289 (309)
T ss_pred cCCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEE
Confidence 467777777755554 3333222 1123345566665531 0112233345566777788889999999
Q ss_pred eeC-CeEEEEEeHHHHHHH
Q 028667 168 IDD-KGMIGMVSIGDVVRA 185 (205)
Q Consensus 168 v~~-~~~vGiIt~~dil~~ 185 (205)
+|+ |+++|.|++.+++..
T Consensus 290 vd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 290 VDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred ECCCCcEeeEEEHHHHhhh
Confidence 998 999999999999864
No 207
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=89.78 E-value=0.76 Score=36.86 Aligned_cols=62 Identities=19% Similarity=0.167 Sum_probs=44.6
Q ss_pred cccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 51 ~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
+...++.+.|.+.... + --.+.....-.+++..+...+...+||+ |++|+++|.++..+++.
T Consensus 246 l~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~ls~~~~~~~~~~~Vv--d~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 246 LSLVSVADAVRRGEPA-D--GEPLLEGFVDRDALSDFLARGRSVLPVV--DEDGRPLGTVTRADLLD 307 (309)
T ss_pred cchhhHHHhhcccccc-c--CCccccchhhHHHHHHHHhcCCceeEEE--CCCCcEeeEEEHHHHhh
Confidence 4667788888874210 0 1123334555567777888889999999 99999999999999864
No 208
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=88.40 E-value=1.4 Score=36.51 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=39.2
Q ss_pred ceEeCCCchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (205)
Q Consensus 71 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~ 120 (205)
+..+.+++++.+.+....+.. ..++|+ |++++++|+++...++..+.
T Consensus 337 ~~~v~~d~~~~~~~~~~~~~~-~p~aVv--de~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 337 VLTVDADTPLSEILARIRQAP-CPVAVV--DEDGRYVGIISRGELLEALA 383 (386)
T ss_pred ccccCccchHHHHHHHHhcCC-CceeEE--cCCCcEEEEecHHHHHHHHh
Confidence 678889999998887777654 567889 89999999999999887654
No 209
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=86.21 E-value=1.6 Score=39.96 Aligned_cols=61 Identities=16% Similarity=0.280 Sum_probs=53.5
Q ss_pred cCccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC---CeEEEEEeHHHHHHHHHhhh
Q 028667 128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD---KGMIGMVSIGDVVRAVVSEH 190 (205)
Q Consensus 128 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~---~~~vGiIt~~dil~~l~~~~ 190 (205)
...++++|.++ +..+..+++..+.-+.+....+..+|+|++ --++|.|.++.+...+..+.
T Consensus 587 ~v~VE~iMV~d--v~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~i 650 (931)
T KOG0476|consen 587 TVKVEHIMVTD--VKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHI 650 (931)
T ss_pred EEEeeeecccc--ceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhc
Confidence 35689999985 999999999999999998887999999986 25999999999999998754
No 210
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=75.87 E-value=18 Score=32.93 Aligned_cols=111 Identities=16% Similarity=0.211 Sum_probs=65.9
Q ss_pred ccHhHHhhhcCCCCCCCceEeCCCch-HHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcC----CCCCc
Q 028667 54 TTISDILKAKGKGADGSWLWCTTDDT-VYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG----RSSKS 128 (205)
Q Consensus 54 ~~v~d~m~~~~~~~~~~~~~v~~~~~-l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~----~~~~~ 128 (205)
..+.+.+... -..+....+ +..+.+.+...+ ..++++ |.+|.++++....+++..+...+ ..+.+
T Consensus 41 ~~~~~~~~~~-------~~ll~~a~~~l~~l~~~l~~~~-~~~~l~--D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E 110 (638)
T PRK11388 41 VTFASIYRRK-------KALLTLGQAALEDAWEYMADRE-CALLIL--DETGCILSRNGDPQTLQQLSALGFNDGTYCAE 110 (638)
T ss_pred HHHHHHHHHh-------HHHHHHHHHHHHHHHHHhcCCC-cEEEEE--cCCceEEEEeCCHHHHHHHHHcCCccCCccch
Confidence 3455555554 233444444 444445554444 677888 89999999998888776543311 12111
Q ss_pred -----CccccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEeeC-CeEEEEEe
Q 028667 129 -----TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDD-KGMIGMVS 178 (205)
Q Consensus 129 -----~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~vGiIt 178 (205)
.-++..+... .++.+...+-..+.+ ..-.+...||.+. |+++|+|+
T Consensus 111 ~~~GTnaig~al~~~-~pv~v~g~EH~~~~~---~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 111 GIIGTNALSLAAISG-QPVKTMGDQHFKQAL---HNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred hccCcCHHHHHHhcC-CceEEecHHHHHHhc---cCceEEeeEEEcCCCCEEEEEE
Confidence 2233333333 366666665444433 3345678899987 99999996
No 211
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=58.56 E-value=26 Score=31.18 Aligned_cols=38 Identities=13% Similarity=0.296 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHH
Q 028667 148 TKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRA 185 (205)
Q Consensus 148 ~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~ 185 (205)
..++.+.+-..+.|-.-++|+.+|+++|+|..+|+++-
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~ 450 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKP 450 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcch
Confidence 35788888888888889999999999999999999764
No 212
>PF14044 NETI: NETI protein
Probab=57.00 E-value=16 Score=21.96 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=19.8
Q ss_pred EEcCCCcHHHHHHHHHhCCCCEEEE
Q 028667 143 TVSPDTKVLRAMQLMTDNRIRHIPV 167 (205)
Q Consensus 143 ~v~~~~~l~~a~~~~~~~~~~~~pV 167 (205)
.+.++.|+.++++.|...|+ .||
T Consensus 3 eV~enETI~~CL~RM~~eGY--~Pv 25 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGY--MPV 25 (57)
T ss_pred eccCCCcHHHHHHHHHHcCC--Cce
Confidence 47789999999999999988 555
No 213
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=51.07 E-value=51 Score=21.04 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=19.4
Q ss_pred CCeEEEEecCCCCceEEEEehHHHHHHHH
Q 028667 92 VGALVVVKPGEQKSVAGIITERDYLRKII 120 (205)
Q Consensus 92 ~~~~~Vv~~d~~~~~~G~v~~~dll~~~~ 120 (205)
...+-|+ +++|..+|+++.++-++..-
T Consensus 12 ~~~VrlI--~~~g~~lGv~~~~eAl~~A~ 38 (76)
T PF05198_consen 12 APEVRLI--DEDGEQLGVMSLREALRLAK 38 (76)
T ss_dssp -SEEEEE---TTS-EEEEEEHHHHHHHHH
T ss_pred CCEEEEE--CCCCcEeceEEHHHHHHHHH
Confidence 4678888 89999999999999665443
No 214
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=46.55 E-value=28 Score=30.98 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=32.5
Q ss_pred CchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHH
Q 028667 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (205)
Q Consensus 77 ~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~ 117 (205)
...+..+.+...+.+-.-++|+ ++++++|+|..+|+++
T Consensus 412 p~~l~~~~~~vs~~GGTPL~V~---~~~~~~GVI~LkDivK 449 (681)
T COG2216 412 PEDLDAAVDEVSRLGGTPLVVV---ENGRILGVIYLKDIVK 449 (681)
T ss_pred CHHHHHHHHHHHhcCCCceEEE---ECCEEEEEEEehhhcc
Confidence 3567788888888888999999 6889999999999875
No 215
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=44.88 E-value=40 Score=28.29 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=36.8
Q ss_pred EEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHHHHHHHH
Q 028667 142 ITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVV 187 (205)
Q Consensus 142 ~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~dil~~l~ 187 (205)
-+-+..+++.+|..=+.+++++++.|.-+..=-|.+|+.++++.+.
T Consensus 115 ~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~ 160 (379)
T KOG1432|consen 115 STQDAATSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRLQLMKFIS 160 (379)
T ss_pred ccHhHHHHHHHHhhhHhhcCCCeEEEecccccccccCHHHHHHHHh
Confidence 4455566788888888899999998887766678899999888876
No 216
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=39.41 E-value=35 Score=24.73 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=16.2
Q ss_pred CCEEEEeeCCeEEEEEeHH
Q 028667 162 IRHIPVIDDKGMIGMVSIG 180 (205)
Q Consensus 162 ~~~~pVv~~~~~vGiIt~~ 180 (205)
...+||.++|+++|++++.
T Consensus 106 ~~~~PI~~~~~vIaVl~~~ 124 (145)
T PF12282_consen 106 QEVVPIRRNGRVIAVLIRE 124 (145)
T ss_dssp EEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEEE
Confidence 3578999999999999954
No 217
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=39.13 E-value=90 Score=21.02 Aligned_cols=63 Identities=11% Similarity=0.297 Sum_probs=41.5
Q ss_pred ccccccccHhHHhhhcCCCCCCCceEeCCCchHHHHHHHHH---hcCCCeEEEEecCC-CCceE----EEEehHHHHHHH
Q 028667 48 EHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMT---QHNVGALVVVKPGE-QKSVA----GIITERDYLRKI 119 (205)
Q Consensus 48 ~~~~~~~~v~d~m~~~~~~~~~~~~~v~~~~~l~~a~~~~~---~~~~~~~~Vv~~d~-~~~~~----G~v~~~dll~~~ 119 (205)
+..|.+-.|.+++... ++.+..+.+=.+..++.. -.+...+.++ +. +|+.+ |.++.++++..+
T Consensus 37 ~~vl~~~~v~~~l~~~-------~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i--~~~~g~~l~~~~G~~~~~~f~~~L 107 (114)
T cd02958 37 RDLWSNESVKEFIREN-------FIFWQCDIDSSEGQRFLQSYKVDKYPHIAII--DPRTGEVLKVWSGNITPEDLLSQL 107 (114)
T ss_pred HHHcCCHHHHHHHHhC-------EEEEEecCCCccHHHHHHHhCccCCCeEEEE--eCccCcEeEEEcCCCCHHHHHHHH
Confidence 3457888999999875 666665554334444443 4466777777 56 66654 888888877654
No 218
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=36.32 E-value=41 Score=22.99 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=13.6
Q ss_pred CeEEEEecCCCCceEEEEeh
Q 028667 93 GALVVVKPGEQKSVAGIITE 112 (205)
Q Consensus 93 ~~~~Vv~~d~~~~~~G~v~~ 112 (205)
-..||. |.+|+++|+|..
T Consensus 92 ~~~PV~--d~~g~viG~V~V 109 (116)
T PF14827_consen 92 AFAPVY--DSDGKVIGVVSV 109 (116)
T ss_dssp EEEEEE---TTS-EEEEEEE
T ss_pred EEEeeE--CCCCcEEEEEEE
Confidence 457999 899999999975
No 219
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=35.63 E-value=2.1e+02 Score=23.32 Aligned_cols=84 Identities=14% Similarity=0.328 Sum_probs=52.5
Q ss_pred chHHHHHHHHHhcCCCeEEEEec--CCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCC-c-----eEEEcCCCc
Q 028667 78 DTVYDAVKSMTQHNVGALVVVKP--GEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEEN-K-----LITVSPDTK 149 (205)
Q Consensus 78 ~~l~~a~~~~~~~~~~~~~Vv~~--d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~-~-----~~~v~~~~~ 149 (205)
..+.++.+.+++.+-..+.|+|+ +++|++ +|. ++++. +.+. .-.++.++++|+. + -..++..+.
T Consensus 97 ~~i~~iv~~lk~~np~~~wv~DPVmGDnG~l--YV~-eelip-vYr~----~i~~ladiiTPNqFE~EiLtg~~I~t~ed 168 (308)
T KOG2599|consen 97 QKIADIVKKLKKKNPNLTWVCDPVMGDNGRL--YVP-EELIP-VYRD----LIIPLADIITPNQFEAEILTGMEIRTEED 168 (308)
T ss_pred HHHHHHHHHHHhcCCCeEEEeCccccCCccE--ecc-HHHHH-HHHH----hhcchhhhcCCcchhhhhhcCCeeccHHH
Confidence 34556667777777777777754 577876 454 44443 2221 1234667776641 0 123556677
Q ss_pred HHHHHHHHHhCCCCEEEEee
Q 028667 150 VLRAMQLMTDNRIRHIPVID 169 (205)
Q Consensus 150 l~~a~~~~~~~~~~~~pVv~ 169 (205)
..+|++.+...+.+.+.|..
T Consensus 169 a~~a~~~lhq~~v~~vVITS 188 (308)
T KOG2599|consen 169 AKRAVEKLHQKGVKTVVITS 188 (308)
T ss_pred HHHHHHHHHHhCCCEEEEEe
Confidence 88888999888888887764
No 220
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=31.13 E-value=82 Score=18.95 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=29.0
Q ss_pred EcCCCcHHHHHHHHHhCCCCEEEEeeCCeEEEEEeHHH
Q 028667 144 VSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGD 181 (205)
Q Consensus 144 v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~vGiIt~~d 181 (205)
.+...++.+.++...+.|++.+.++|.+.+-|.....+
T Consensus 11 ~~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~ 48 (67)
T smart00481 11 LDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYK 48 (67)
T ss_pred ccccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHH
Confidence 35566788888999999999999988877777654433
No 221
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=29.78 E-value=67 Score=22.03 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=25.6
Q ss_pred ceEEEcCCCcHHHHHHHHHhCCCCE---EEEeeCCeEEEEEeHHH
Q 028667 140 KLITVSPDTKVLRAMQLMTDNRIRH---IPVIDDKGMIGMVSIGD 181 (205)
Q Consensus 140 ~~~~v~~~~~l~~a~~~~~~~~~~~---~pVv~~~~~vGiIt~~d 181 (205)
++..++.+...........+.+... +|+..+|+++|+++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~ 122 (148)
T PF13185_consen 78 EPIIINDDDSSFPPWELARHPGIRSILCVPLRSGGEVIGVLSLYS 122 (148)
T ss_dssp S-EEESCCCGGGSTTHHHCCTT-SEEEEEEEEETTEEEEEEEEEE
T ss_pred ceEEEeCccccccchhhhccccCCEEEEEEEeECCEEEEEEEEee
Confidence 3777772222222245566666654 78998999999997654
No 222
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=29.41 E-value=71 Score=20.86 Aligned_cols=28 Identities=11% Similarity=0.016 Sum_probs=23.1
Q ss_pred CCceEeCCCchHHHHHHHHHhcCCCeEE
Q 028667 69 GSWLWCTTDDTVYDAVKSMTQHNVGALV 96 (205)
Q Consensus 69 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~ 96 (205)
+++.+++.++-+.+|.++...++-+.+.
T Consensus 50 GDp~tiSS~~EL~EA~rl~~~n~~~~l~ 77 (83)
T cd06404 50 GDPCTISSQMELEEAFRLYELNKDSELN 77 (83)
T ss_pred CCceeecCHHHHHHHHHHHHhcCcccEE
Confidence 4699999999999999999887655543
No 223
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=28.58 E-value=1.7e+02 Score=20.70 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHH
Q 028667 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (205)
Q Consensus 79 ~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~ 121 (205)
-+..++++.++.....+.+. +..+.- +-.+..++++..+.
T Consensus 22 R~~~a~~l~~~~~~~~ii~s--Gg~~~~-~~~~ea~~m~~~l~ 61 (150)
T cd06259 22 RLDAAAELYRAGPAPKLIVS--GGQGPG-EGYSEAEAMARYLI 61 (150)
T ss_pred HHHHHHHHHHhCCCCEEEEc--CCCCCC-CCCCHHHHHHHHHH
Confidence 46677777777766666666 333222 35566666655443
No 224
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=27.98 E-value=69 Score=23.75 Aligned_cols=19 Identities=26% Similarity=0.630 Sum_probs=16.1
Q ss_pred EEEEeeCCeEEEEEeHHHH
Q 028667 164 HIPVIDDKGMIGMVSIGDV 182 (205)
Q Consensus 164 ~~pVv~~~~~vGiIt~~di 182 (205)
.+||..+|+++|++....-
T Consensus 118 VvPi~~~g~~iGvlDiDS~ 136 (163)
T COG1956 118 VVPIFKDGKLIGVLDIDSP 136 (163)
T ss_pred EEEEEECCEEEEEEecCCC
Confidence 6899999999999987543
No 225
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=26.93 E-value=81 Score=24.35 Aligned_cols=27 Identities=15% Similarity=0.406 Sum_probs=21.7
Q ss_pred CCEEEEeeC--C---eEEEEEeHHHHHHHHHh
Q 028667 162 IRHIPVIDD--K---GMIGMVSIGDVVRAVVS 188 (205)
Q Consensus 162 ~~~~pVv~~--~---~~vGiIt~~dil~~l~~ 188 (205)
+..+||.|+ | .+-|.+|-+||++++..
T Consensus 127 v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~ 158 (204)
T PF04459_consen 127 VEVVPVKNRFFGGTITVAGLLTGQDIIEQLKG 158 (204)
T ss_pred EEEEEeecCCCCCCeEEeeCccHHHHHHHhCc
Confidence 456677675 4 59999999999999976
No 226
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=26.93 E-value=1.2e+02 Score=19.54 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=28.2
Q ss_pred ceEEEcCCCcHHHHHHHHHhCCCCEEEEeeCCeEE
Q 028667 140 KLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMI 174 (205)
Q Consensus 140 ~~~~v~~~~~l~~a~~~~~~~~~~~~pVv~~~~~v 174 (205)
+.+..+++.++..++.-|..-.-..+.|+.+++++
T Consensus 21 kL~~~~~~~D~~~i~r~f~TpdN~lV~V~~~nr~l 55 (83)
T PF10623_consen 21 KLFDTKPDNDPDKIARRFCTPDNCLVCVLQDNRFL 55 (83)
T ss_pred eEeecCCCCCHHHHHhhccCcCCeEEEEEeCCceE
Confidence 38888999999999999988777777777776654
No 227
>CHL00199 infC translation initiation factor 3; Provisional
Probab=25.97 E-value=1.3e+02 Score=22.84 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=20.2
Q ss_pred chHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHH
Q 028667 78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY 115 (205)
Q Consensus 78 ~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dl 115 (205)
.+..+|++...+.+.+-+.|-. +..--++-+++...+
T Consensus 40 ~~~~eAl~~A~~~~lDLVeVs~-~a~PPVCKImdygK~ 76 (182)
T CHL00199 40 FTSEQAIQLAANQGLDLVLVSE-KSDPPVCRIIDYGKY 76 (182)
T ss_pred eeHHHHHHHHHHcCCCEEEECC-CCCCCeEEEeehHHH
Confidence 4566777777766666655541 122233455555553
No 228
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=25.34 E-value=1e+02 Score=19.16 Aligned_cols=15 Identities=40% Similarity=0.857 Sum_probs=11.5
Q ss_pred EEEEee-CCeEEEEEe
Q 028667 164 HIPVID-DKGMIGMVS 178 (205)
Q Consensus 164 ~~pVv~-~~~~vGiIt 178 (205)
..||.+ +|+++|++.
T Consensus 18 s~pi~~~~g~~~Gvv~ 33 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVG 33 (81)
T ss_dssp EEEEEETTTEEEEEEE
T ss_pred EEEEECCCCCEEEEEE
Confidence 358888 599999854
No 229
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=25.25 E-value=59 Score=23.41 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=11.7
Q ss_pred CEEEEeeC-CeEEEEE
Q 028667 163 RHIPVIDD-KGMIGMV 177 (205)
Q Consensus 163 ~~~pVv~~-~~~vGiI 177 (205)
+.=|+.|+ |+++|||
T Consensus 108 SGRpi~DNsGrVVaIV 123 (158)
T PF00944_consen 108 SGRPIFDNSGRVVAIV 123 (158)
T ss_dssp TTEEEESTTSBEEEEE
T ss_pred CCCccCcCCCCEEEEE
Confidence 34578888 9999987
No 230
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=24.48 E-value=1.7e+02 Score=17.55 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=20.4
Q ss_pred CCCEEEEe--eCCeEEEEEeHHHHHHHHH
Q 028667 161 RIRHIPVI--DDKGMIGMVSIGDVVRAVV 187 (205)
Q Consensus 161 ~~~~~pVv--~~~~~vGiIt~~dil~~l~ 187 (205)
+...+|++ ++|+++.--+..++...+.
T Consensus 48 ~~~~vP~i~~~~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 48 GNMTVPTVKFADGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CCceeCEEEECCCeEecCCCHHHHHHHhh
Confidence 66778876 4688888888888877664
No 231
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=23.83 E-value=88 Score=20.42 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.4
Q ss_pred CCCCceEEEEehHHHHHHHHHc
Q 028667 101 GEQKSVAGIITERDYLRKIIVQ 122 (205)
Q Consensus 101 d~~~~~~G~v~~~dll~~~~~~ 122 (205)
+++|++.|-||..|+...+...
T Consensus 23 g~~gklfGSVt~~dIa~~l~~~ 44 (87)
T PF03948_consen 23 GENGKLFGSVTSKDIAKALKEQ 44 (87)
T ss_dssp SSCSSBSSEBSHHHHHHHHHHC
T ss_pred cCCcceecCcCHHHHHHHHHHh
Confidence 6789999999999998887765
No 232
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=23.14 E-value=3.6e+02 Score=20.83 Aligned_cols=45 Identities=11% Similarity=0.398 Sum_probs=35.0
Q ss_pred cCCCcHHHHHHHHHhCCCCEE---EEeeCC------------eEEEEEeHHHHHHHHHhh
Q 028667 145 SPDTKVLRAMQLMTDNRIRHI---PVIDDK------------GMIGMVSIGDVVRAVVSE 189 (205)
Q Consensus 145 ~~~~~l~~a~~~~~~~~~~~~---pVv~~~------------~~vGiIt~~dil~~l~~~ 189 (205)
+...++.++.+.+++.|.... .++|.+ ++.-++|..|++..+.+.
T Consensus 123 TTG~Si~eai~~l~~~G~~V~gv~~ivDR~~~~~~~~~~~g~~~~sl~tl~dl~~~~~~~ 182 (201)
T COG0461 123 TTGGSILEAVEALREAGAEVVGVAVIVDRQSGAKEVLKEYGVKLVSLVTLSDLLEVLYEA 182 (201)
T ss_pred cCCHhHHHHHHHHHHcCCeEEEEEEEEecchhHHHHHHhcCCceEEEeeHHHHHHHHHhc
Confidence 346799999999999987543 445531 588899999999999873
No 233
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=21.62 E-value=1.5e+02 Score=22.29 Aligned_cols=39 Identities=8% Similarity=0.108 Sum_probs=23.6
Q ss_pred CchHHHHHHHHHhcCCCeEEEEecCCCCceEEEEehHHHH
Q 028667 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (205)
Q Consensus 77 ~~~l~~a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll 116 (205)
-.++.+|++...+.+.+-+.|-. +.+--++=+++...+.
T Consensus 34 v~~~~eAl~~A~~~~lDLV~v~~-~~~PPVckI~dy~k~~ 72 (177)
T PRK00028 34 IVSTREALELAEEAGLDLVEISP-NAKPPVCKIMDYGKFK 72 (177)
T ss_pred ceeHHHHHHHHHHcCCCEEEECC-CCCCCEEEEEeHHHHH
Confidence 35777888888887776666541 2233345566665543
No 234
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=21.30 E-value=1.3e+02 Score=19.61 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=22.6
Q ss_pred cccccCCceEEEcCCCcHHHHHHHHHhCC
Q 028667 133 DIMTEENKLITVSPDTKVLRAMQLMTDNR 161 (205)
Q Consensus 133 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~ 161 (205)
.++...+++++++.+..+.+|+++..+.+
T Consensus 43 KYlDde~e~v~lssd~eLeE~~rl~~~~~ 71 (81)
T cd06396 43 KYVDEENEEVSVNSQGEYEEALKSAVRQG 71 (81)
T ss_pred EEEcCCCCEEEEEchhhHHHHHHHHHhCC
Confidence 34444456899999999999999888775
No 235
>PF05651 Diacid_rec: Putative sugar diacid recognition; InterPro: IPR008599 This region is found in several proteins characterised as carbohydrate diacid regulators (e.g. P36047 from SWISSPROT). An HTH DNA-binding motif is found at the C terminus of these proteins suggesting that this region includes the sugar recognition region.
Probab=20.80 E-value=3.2e+02 Score=19.45 Aligned_cols=81 Identities=12% Similarity=0.211 Sum_probs=44.4
Q ss_pred HHHHHHhcCCCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCccccccccCCceEEEcCCCcHHHHHHHHHhCCC
Q 028667 83 AVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRI 162 (205)
Q Consensus 83 a~~~~~~~~~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~ 162 (205)
.++.+.+.--..+-|+ |++|..+|-=..+.+ .........+|... ....++.++. +-+. -.+.|+
T Consensus 9 Iv~~~~~~i~~~inim--d~~G~IIAStd~~RI---------G~~HegA~~~i~~~-~~~~i~~~~~--~~~~-g~k~Gi 73 (135)
T PF05651_consen 9 IVDEIMEIIGYNINIM--DENGIIIASTDPERI---------GTFHEGAKEVIRTN-KEIEITEEDA--EQYP-GVKPGI 73 (135)
T ss_pred HHHHHHHHcCCCEEEE--CCCcEEEecCChhhc---------CccCHHHHHHHHcC-CcccccHhHH--hhcc-CCCcce
Confidence 3344443333457788 888888776666553 12345566666653 2343433321 1111 111222
Q ss_pred CEEEEeeCCeEEEEEeH
Q 028667 163 RHIPVIDDKGMIGMVSI 179 (205)
Q Consensus 163 ~~~pVv~~~~~vGiIt~ 179 (205)
.+|+.-+|+++|+|-.
T Consensus 74 -nlPI~~~g~~iGviGI 89 (135)
T PF05651_consen 74 -NLPIIFNGEVIGVIGI 89 (135)
T ss_pred -eeeEEECCEEEEEEEE
Confidence 6899889999999864
No 236
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=20.66 E-value=5.5e+02 Score=22.11 Aligned_cols=87 Identities=21% Similarity=0.229 Sum_probs=52.7
Q ss_pred CCeEEEEecCCCCceEEEEehHHHHHHHHHcCCCCCcCcc-ccccccCCceEEEcCCCcHHHHHHHHHhCCCCEEEEe--
Q 028667 92 VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV-GDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVI-- 168 (205)
Q Consensus 92 ~~~~~Vv~~d~~~~~~G~v~~~dll~~~~~~~~~~~~~~v-~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVv-- 168 (205)
++.++|. ++ +.|++|-+||+ .+- ...+ ..++-|. -..=.|.++.++.+.+ +....+|-
T Consensus 306 v~v~~v~--n~---VagLlTg~Di~-~l~-------~~~~~d~~liP~---~~fldd~t~~~~~~~l---~~~v~v~~~~ 366 (404)
T TIGR03278 306 VNVVPVK--KD---IACLITEDDLE-ELD-------LSEVKETVIIPG---RAFVHDMVAEEILKRD---GVDRIVVRGP 366 (404)
T ss_pred EEEEEec--Cc---ccccchHHHHH-Hhc-------CCCCCCEEEecC---ccccccccHHHHHHHh---CCcEEEecCC
Confidence 4556665 33 99999999987 431 1122 2334442 2222344666655444 66666653
Q ss_pred ----eCCeEEEEEeHHHHHHHHHhhhhHHHHHH
Q 028667 169 ----DDKGMIGMVSIGDVVRAVVSEHREELNRL 197 (205)
Q Consensus 169 ----~~~~~vGiIt~~dil~~l~~~~~~~~~~l 197 (205)
-+|+.-|..|+++++..=.+...+....+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (404)
T TIGR03278 367 DRLTADGEMSGGMTREEVLEFELEAFRELINLI 399 (404)
T ss_pred ceeeecceecccccHHHHHHHHHHHHHHHHHHH
Confidence 24789999999999988666655554443
No 237
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=20.14 E-value=71 Score=21.16 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=15.0
Q ss_pred cCCCeEEEEecCCCCceEEE
Q 028667 90 HNVGALVVVKPGEQKSVAGI 109 (205)
Q Consensus 90 ~~~~~~~Vv~~d~~~~~~G~ 109 (205)
.+.+.-||+ |.+|+++|+
T Consensus 103 ~G~SGgpv~--~~~G~vvGi 120 (120)
T PF13365_consen 103 PGSSGGPVF--DSDGRVVGI 120 (120)
T ss_dssp TTTTTSEEE--ETTSEEEEE
T ss_pred CCcEeHhEE--CCCCEEEeC
Confidence 467788999 889999996
Done!