BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028668
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42
PE=1 SV=1
Length = 295
Score = 299 bits (766), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 146/173 (84%), Positives = 160/173 (92%)
Query: 33 GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 92
GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGE++IATVFKFVE PENNE
Sbjct: 123 GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETIIATVFKFVEPPENNE 182
Query: 93 KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLK 152
KPM Q+SR KFKI+S+KVK +DYVPELFDEQKD + EQILRV+FL+PER PALEKLK
Sbjct: 183 KPMDQRSRVKFKIMSLKVKGPMDYVPELFDEQKDDVSKEQILRVIFLDPERSNPALEKLK 242
Query: 153 RQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 205
RQLA+ADAAV ARKKPPE+TGP++IGEGLVIDEWKERRERYLA+QQ EG DSV
Sbjct: 243 RQLAEADAAVEARKKPPEETGPKMIGEGLVIDEWKERRERYLAQQQGEGADSV 295
>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41
PE=2 SV=1
Length = 266
Score = 279 bits (714), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 135/174 (77%), Positives = 156/174 (89%), Gaps = 1/174 (0%)
Query: 33 GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 92
GKQVRSAIK+KNTSKSH AFKFQTTAPKSC+MRPPG +LAPGES+ ATVFKFVE PENNE
Sbjct: 92 GKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRPPGGVLAPGESVFATVFKFVEHPENNE 151
Query: 93 K-PMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKL 151
K P+ QKS+ KFKI+S+KVK V+YVPELFDEQKDQ A EQ+LRV+F++ +RP ALEKL
Sbjct: 152 KQPLNQKSKVKFKIMSLKVKPGVEYVPELFDEQKDQVAVEQVLRVIFIDADRPSAALEKL 211
Query: 152 KRQLADADAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV 205
KRQL +A+AAV ARKKPP +TGPR++GEGLVIDEWKERRE+YLARQQVE VDS+
Sbjct: 212 KRQLDEAEAAVEARKKPPPETGPRVVGEGLVIDEWKERREKYLARQQVESVDSL 265
>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43
PE=2 SV=1
Length = 287
Score = 241 bits (616), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 129/173 (74%), Positives = 145/173 (83%), Gaps = 2/173 (1%)
Query: 33 GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 92
GKQVRSAIKIKNTSKSHVAFKFQTT PKSCFMRP GAILAPGE +IATVFKFVE PENNE
Sbjct: 115 GKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIATVFKFVEPPENNE 174
Query: 93 KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLK 152
KPM QKS KFKI+S+K+K DY+PELF+EQKD + EQ++RVVFL+PE P +EKLK
Sbjct: 175 KPMEQKSGVKFKIMSLKMKVPTDYMPELFEEQKDHVSEEQVMRVVFLDPENPNSMMEKLK 234
Query: 153 RQLADADAAVAARKKPPED-TGPRIIGEGLVIDEWKERRERYLARQQVEGVDS 204
QLA+ADAA ARKK E GP+ IGEGLVIDEWK+RRERYLA+QQ GVD+
Sbjct: 235 SQLAEADAADEARKKASEGIVGPKPIGEGLVIDEWKQRRERYLAQQQ-GGVDA 286
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21
PE=2 SV=1
Length = 220
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 30 FPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPE 89
F KQ +K+ N ++++VAFK +TT+PK F+RP ++ P +S I V L
Sbjct: 21 FELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIR----VTLQA 76
Query: 90 NNEKPMYQKSRDKFKIISMKV--KADVDYVPE-LFDEQKDQTAAEQILRVVFLNPERPEP 146
E P + +DKF + S V DVD +P+ F + +T E L+V ++ P +
Sbjct: 77 QREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYITPSTTQR 136
Query: 147 ALE 149
+ E
Sbjct: 137 SSE 139
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11
PE=1 SV=1
Length = 256
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 30 FPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPE 89
F KQ+ ++ + N + ++VAFK +TT PK +RP ++ P +T V +
Sbjct: 34 FELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPR----STCEVLVTMQA 89
Query: 90 NNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFLNPERP 144
E P + +DKF + + V + PE+F ++ E LRV ++ P RP
Sbjct: 90 QKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAPPRP 147
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12
PE=1 SV=1
Length = 239
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 23 ILPISSTFP--AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIAT 80
I P+ FP KQ+ ++ + N + ++VAFK +TT PK +RP ++ P S
Sbjct: 8 IDPVDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSSSEV- 66
Query: 81 VFKFVELPENNEKPMYQKSRDKF---KIISMKVKADVDYVPELFDEQKDQTAAEQILRVV 137
V + E P + +DKF +++ D E+F ++ E LRVV
Sbjct: 67 ---LVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVV 123
Query: 138 FLNPERP 144
++ P RP
Sbjct: 124 YVAPPRP 130
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13
PE=2 SV=1
Length = 239
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 30 FPAGKQVRSAIKIKN-TSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELP 88
F KQ ++++ N T+ VAFK +TT P+ +RP ++ PG+S T V +
Sbjct: 18 FELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVT----VTMQ 73
Query: 89 ENNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFL--NPER 143
E P+ + +DKF + ++ V + + E+F+++ + + LRVV++ NP
Sbjct: 74 AQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYIPANPPS 133
Query: 144 PEP 146
P P
Sbjct: 134 PVP 136
>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SCS2 PE=1 SV=3
Length = 244
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 31 PAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 90
P +Q I N S +AFK +TTAPK +RP A++APGE++ V F+ L
Sbjct: 16 PLTEQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQVI-FLGL--- 71
Query: 91 NEKPMYQ-KSRDKFKIISMKVKADVD 115
E+P K RDKF +I++ D++
Sbjct: 72 TEEPAADFKCRDKFLVITLPSPYDLN 97
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22
PE=1 SV=1
Length = 386
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 34 KQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 93
KQ +++ NT+ +VAFK +TT+PK +RP ++AP + TV + E
Sbjct: 21 KQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTCEFTVI----MQAFKEP 76
Query: 94 PMYQKSRDKFKIISMKVKA---DVDYVPELFDEQKDQTAAEQILRVVFLNP-ERPE 145
P +DKF I S V A D D +F + + + E LRV + P + PE
Sbjct: 77 PPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLVPPSDSPE 132
>sp|Q6Q595|SCS22_YEAST Vesicle-associated membrane protein-associated protein SCS22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SCS22 PE=1 SV=2
Length = 175
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 31 PAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 90
P KQ IK++N + V FK +T+AP +RP AI+ ES+ + F+ LP++
Sbjct: 13 PLNKQSTEYIKLENDGEKRVIFKVRTSAPTKYCVRPNVAIIGAHESVNVQIV-FLGLPKS 71
Query: 91 NEKPMYQKSRDKFKIISMKVKADVDYV---------PELFDEQKDQTAAEQI 133
+ RDKF I+++ + A V P L ++ KD ++I
Sbjct: 72 TADDEMDQKRDKFLIVTLPIPAAYQNVEDGELLSDWPNLEEQYKDDIVFKKI 123
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 22 LILPISSTFPA--GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIA 79
+I P+ FP K+V ++ + N ++++VAFK +TT K ++RP ++ P S
Sbjct: 178 IIDPVDVQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSSCEV 237
Query: 80 TVFKFVELPENNEKPMYQKSRDKF----KIISMKVKADVDYVPELFDEQKDQTAAEQILR 135
V + E P + RDK K++ + A D E+F ++ A E L+
Sbjct: 238 LVI----MQALKEAPADMQCRDKLLFQCKVVEPETTAK-DVTSEMFSKEAGHPAEETRLK 292
Query: 136 VVFLNPERP 144
V+++ P +P
Sbjct: 293 VMYVTPPQP 301
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 33 GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 92
KQ ++ + N + ++VAFK QTT PK ++P ++ P S V + E
Sbjct: 21 NKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPRSSCEV----LVVMQALKE 76
Query: 93 KPMYQKSRDKFKIISMKV----KADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPAL 148
P ++ +DK + KV D + E+F ++ E I +++++ P +P+ +
Sbjct: 77 APADRQCKDKL-LFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETIFKIIYVAPPQPQSPV 135
Query: 149 EKLKRQLADADAAVAARKKPPED-TGP--------RIIGEGLVID 184
++ + A+V+ + E GP R+ E L+ID
Sbjct: 136 QEGLEDGSSPSASVSDKGNASEVFVGPSVGIVDLIRMSDELLIID 180
>sp|A5GFS8|VAPB_PIG Vesicle-associated membrane protein-associated protein B OS=Sus
scrofa GN=VAPB PE=3 SV=1
Length = 243
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 36 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 95
V + +K+ N + +V FK +TTAP+ +RP I+ G S+ +V L + P
Sbjct: 26 VTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVM----LQPFDYDP- 80
Query: 96 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 138
+KS+ KF + SM AD + + E K + + LR VF
Sbjct: 81 NEKSKHKFMVQSMFAPADTSDMEAAWKEAKPEDLMDSKLRCVF 123
>sp|Q9Z269|VAPB_RAT Vesicle-associated membrane protein-associated protein B OS=Rattus
norvegicus GN=Vapb PE=1 SV=3
Length = 243
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 36 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 95
V + +K+ N + +V FK +TTAP+ +RP ++ G SL +V L + P
Sbjct: 26 VTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGASLNVSVM----LQPFDYDP- 80
Query: 96 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 138
+KS+ KF + SM D + ++ E K + + LR VF
Sbjct: 81 NEKSKHKFMVQSMFAPPDTSDMEAVWKEAKPEDLMDSKLRCVF 123
>sp|A2VDZ9|VAPB_BOVIN Vesicle-associated membrane protein-associated protein B OS=Bos
taurus GN=VAPB PE=2 SV=1
Length = 243
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 36 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 95
V + +K+ N + +V FK +TTAP+ +RP I+ G S+ +V L + P
Sbjct: 26 VTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVM----LQPFDYDP- 80
Query: 96 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 138
+KS+ KF + SM D + ++ E K + + LR VF
Sbjct: 81 NEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVF 123
>sp|O95292|VAPB_HUMAN Vesicle-associated membrane protein-associated protein B/C OS=Homo
sapiens GN=VAPB PE=1 SV=3
Length = 243
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 36 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 95
V + +K+ N + +V FK +TTAP+ +RP I+ G S+ +V L + P
Sbjct: 26 VTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVM----LQPFDYDP- 80
Query: 96 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 138
+KS+ KF + SM D + ++ E K + + LR VF
Sbjct: 81 NEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVF 123
>sp|Q5R601|VAPA_PONAB Vesicle-associated membrane protein-associated protein A OS=Pongo
abelii GN=VAPA PE=2 SV=2
Length = 249
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 36 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 95
V + +K++N S V FK +TTAP+ +RP I+ PG ++ +V L + P
Sbjct: 33 VTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM----LQPFDYDP- 87
Query: 96 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 142
+KS+ KF + ++ + + ++ E K + LR VF P
Sbjct: 88 NEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRCVFEMPN 134
>sp|Q9P0L0|VAPA_HUMAN Vesicle-associated membrane protein-associated protein A OS=Homo
sapiens GN=VAPA PE=1 SV=3
Length = 249
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 36 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 95
V + +K++N S V FK +TTAP+ +RP I+ PG ++ +V L + P
Sbjct: 33 VTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM----LQPFDYDP- 87
Query: 96 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 142
+KS+ KF + ++ + + ++ E K + LR VF P
Sbjct: 88 NEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLRCVFEMPN 134
>sp|Q0VCY1|VAPA_BOVIN Vesicle-associated membrane protein-associated protein A OS=Bos
taurus GN=VAPA PE=2 SV=1
Length = 249
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 36 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 95
V + +K++N S V FK +TTAP+ +RP I+ PG ++ +V L + P
Sbjct: 33 VTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGLTVTVSVM----LQPFDYDP- 87
Query: 96 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 142
+KS+ KF + ++ ++ + ++ E K + LR VF P
Sbjct: 88 NEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPN 134
>sp|Q9QY76|VAPB_MOUSE Vesicle-associated membrane protein-associated protein B OS=Mus
musculus GN=Vapb PE=2 SV=3
Length = 243
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 36 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 95
V + +K+ N + +V FK +TT P+ +RP ++ G SL +V L + P
Sbjct: 26 VTTNLKLGNPTDRNVCFKVKTTVPRRYCVRPNSGVIDAGASLNVSVM----LQPFDYDP- 80
Query: 96 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVF 138
+KS+ KF + SM D + ++ E K + + LR VF
Sbjct: 81 NEKSKHKFMVQSMFAPPDTSDMEAVWKEAKPEDLMDSKLRCVF 123
>sp|Q9WV55|VAPA_MOUSE Vesicle-associated membrane protein-associated protein A OS=Mus
musculus GN=Vapa PE=1 SV=2
Length = 249
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 36 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 95
V + +K++N S V FK +TTAP+ +RP I+ PG + +V L + P
Sbjct: 33 VTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVM----LQPFDYDP- 87
Query: 96 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 142
+KS+ KF + ++ ++ + ++ E K + LR VF P
Sbjct: 88 NEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPN 134
>sp|Q16943|VP33_APLCA Vesicle-associated membrane protein/synaptobrevin-binding protein
OS=Aplysia californica PE=2 SV=1
Length = 260
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 24/179 (13%)
Query: 36 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 95
V + +K+ N + + FK +TTAPK +RP IL P S+ V L N P
Sbjct: 26 VTADLKLSNPTDRRICFKVKTTAPKRYCVRPNSGILEPKTSIAVAVM----LQPFNYDP- 80
Query: 96 YQKSRDKFKIISMKVKADVDYVPE----LFDEQKDQTAAEQILRVVFLNPERPEPALEKL 151
+K++ KF + SM D+V E L+ + ++ + LR VF P+ A
Sbjct: 81 NEKNKHKFMVQSMYAP---DHVVESQELLWKDAPPESLMDTKLRCVFEMPDGSHQAPASD 137
Query: 152 KRQLADA----------DAAVAARKKPPEDTGPRIIGEGLVIDEWKERRERYLARQQVE 200
+ DA D VA+RK E P+ +G E ++ + L + Q E
Sbjct: 138 ASRATDAGAHFSESALEDPTVASRKT--ETQSPKRVGAVGSAGEDVKKLQHELKKAQSE 194
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2
Length = 319
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 31 PAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPEN 90
P + V+ ++++NT+ + FK +TTAPK +RP G + E+ A + + P +
Sbjct: 14 PLTRLVKCDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRI---EANSAVSVEVILQPLD 70
Query: 91 NEKPMYQKSRDKFKIISMKVKADVDY--VPELFDEQKDQTAAEQILRVVF 138
+E K RDKF + S ++K ++ + +++ + +E+ +R V+
Sbjct: 71 HEPAPGTKCRDKFLVQSTELKPELQGMDIADIWTQVSKANISERKIRCVY 120
>sp|Q9Z270|VAPA_RAT Vesicle-associated membrane protein-associated protein A OS=Rattus
norvegicus GN=Vapa PE=1 SV=3
Length = 249
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 36 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 95
V + +K++N S V FK +TTAP+ +RP ++ PG + +V L + P
Sbjct: 33 VTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVM----LQPFDYDP- 87
Query: 96 YQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 142
+KS+ KF + ++ ++ + ++ E K + LR VF P
Sbjct: 88 NEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPN 134
>sp|P53021|MSP1_GLORO Major sperm protein 1 OS=Globodera rostochiensis GN=MSP-1 PE=2
SV=2
Length = 126
Score = 37.4 bits (85), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 28 STFPAGKQVRSA---------IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 77
+T PA K V +A ++I N + F F+TT PK M PP +L P ES+
Sbjct: 10 ATMPAQKVVFNAPFDNKATYYVRIINPGTKRIGFAFKTTKPKRINMNPPNGVLGPKESV 68
>sp|P53023|MSP3_GLORO Major sperm protein 3 OS=Globodera rostochiensis GN=MSP-3 PE=2
SV=2
Length = 126
Score = 37.4 bits (85), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 28 STFPAGKQVRSA---------IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 77
+T PA K V +A ++I N + F F+TT PK M PP +L P ES+
Sbjct: 10 ATMPAQKVVFNAPFDNKATYYVRIINPGTKRIGFAFKTTKPKRINMNPPNGVLGPKESV 68
>sp|P53022|MSP2_GLORO Major sperm protein 2 OS=Globodera rostochiensis GN=MSP-2 PE=2
SV=2
Length = 126
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 40 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 77
+++ N + + F F+TT PK M PP +L P ES+
Sbjct: 31 VRVINPGTNRIGFAFKTTKPKRINMNPPNGVLGPKESV 68
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31
PE=3 SV=1
Length = 149
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 30 FPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPE 89
F KQ+ ++ + N + ++VAFK +TT + +RP ++ P +T V +
Sbjct: 18 FELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLILPK----STCKVLVTMQA 73
Query: 90 NNEKPMYQKSRDKFKIISMKVKADV---DYVPELFDEQKDQTAAEQILRVVFL 139
E P +S +KF I S+ V + E+F ++ E LRV ++
Sbjct: 74 QKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETKLRVTYV 126
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16G5.05c PE=1 SV=1
Length = 383
Score = 34.7 bits (78), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 40 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ-K 98
I + N + V FK +TTAPK +RP + P +TV V L E+P K
Sbjct: 23 ISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPK----STVNVQVLLQAMKEEPAPDFK 78
Query: 99 SRDKFKIISMKV----KADVDYVPELFDEQKDQTAA--EQILRVVFLNPERPEPALEKLK 152
RDKF I SM + ++V+ E + E + Q + ++ +R V+ + P+ A ++++
Sbjct: 79 CRDKFLIQSMAIGDADTSNVENYHEFWTEMEKQGRSIFDRKIRCVYSTKQPPQSADKQVE 138
Query: 153 R 153
Sbjct: 139 N 139
>sp|Q9CWP6|MSPD2_MOUSE Motile sperm domain-containing protein 2 OS=Mus musculus GN=Mospd2
PE=1 SV=2
Length = 518
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 37 RSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 77
++ I + N +K+ VAFK +TTAP+ ++P + PG S+
Sbjct: 347 KTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASI 387
>sp|Q8NHP6|MSPD2_HUMAN Motile sperm domain-containing protein 2 OS=Homo sapiens GN=MOSPD2
PE=1 SV=1
Length = 518
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 37 RSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 77
++ I + N +K+ VAFK +TTAP+ ++P + PG S+
Sbjct: 347 KTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASV 387
>sp|Q21244|MSP63_CAEEL Major sperm protein 63 OS=Caenorhabditis elegans GN=msp-63 PE=2
SV=3
Length = 127
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 40 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 93
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q19832|MSP3_CAEEL Major sperm protein 3 OS=Caenorhabditis elegans GN=msp-3 PE=2
SV=3
Length = 127
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 40 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 93
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|P05634|MSP10_CAEEL Major sperm protein 10/36/56/76 OS=Caenorhabditis elegans
GN=msp-10 PE=2 SV=4
Length = 127
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 40 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 93
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|P53017|MSP19_CAEEL Major sperm protein 19/31/40/45/50/51/53/59/61/65/81/113/142
OS=Caenorhabditis elegans GN=msp-19 PE=1 SV=2
Length = 127
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 40 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 93
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q9TVW5|MSP77_CAEEL Major sperm protein 77/79 OS=Caenorhabditis elegans GN=msp-77
PE=2 SV=3
Length = 127
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 40 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 93
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q94053|MSP78_CAEEL Major sperm protein 78 OS=Caenorhabditis elegans GN=msp-78 PE=2
SV=3
Length = 127
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 40 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 93
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q23519|MS152_CAEEL Major sperm protein 152 OS=Caenorhabditis elegans GN=msp-152 PE=2
SV=3
Length = 127
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 40 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 93
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|Q17856|MSP55_CAEEL Major sperm protein 55/57 OS=Caenorhabditis elegans GN=msp-55
PE=2 SV=3
Length = 127
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 40 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 93
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 32 IKVINSSARRIVYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 89
>sp|P53018|MSP32_CAEEL Major sperm protein 32 OS=Caenorhabditis elegans GN=msp-32 PE=2
SV=1
Length = 190
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 40 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV----FKFVELPENNEK 93
IK+ N+S + + +TT K + PP +L P E+++ V F F + NN++
Sbjct: 95 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDAFAFGQEDTNNDR 152
>sp|Q98KJ4|MIAA_RHILO tRNA dimethylallyltransferase OS=Rhizobium loti (strain MAFF303099)
GN=miaA PE=3 SV=1
Length = 321
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 75 ESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQIL 134
E L A+ +E +P+ + +F +I A VD + FD+ D+ A E++
Sbjct: 179 EVLDASGRSILEWQAERGRPLIDRQTARFLVIEPDRAALVDRIERRFDQMLDKGALEEVR 238
Query: 135 RVVFLNPERPEPALEKLKRQLADADAAVAARKKPPE 170
++ L + PA++ + + D AA+A + PE
Sbjct: 239 QLAALGLDPDLPAMKAIG--VRDLQAAMAGQLSFPE 272
>sp|P25648|SRB8_YEAST Mediator of RNA polymerase II transcription subunit 12
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SRB8 PE=1 SV=2
Length = 1427
Score = 30.4 bits (67), Expect = 8.8, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 80 TVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV 137
T F ++ ENNE M + F +++ D ++FD+ KD E I ++V
Sbjct: 1093 TCFCIKKIMENNEPAMAMEDLKNFIFQIIEITNSNDLCSQIFDQLKDMQTIEMITQIV 1150
>sp|B4SIF5|DPO4_STRM5 DNA polymerase IV OS=Stenotrophomonas maltophilia (strain R551-3)
GN=dinB PE=3 SV=1
Length = 356
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 125 KDQTAAEQILRVVFLNPERPEPALEKLKRQLADADAAVAARKKPPEDTGPRIIGEGL 181
K +TA +IL F PERP ++E+L+ D A+ AR P DT R++G GL
Sbjct: 288 KLKTAQFRILTRSF-TPERPPESMEELR----DIALALRARVDLPADTRYRLVGVGL 339
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,592,089
Number of Sequences: 539616
Number of extensions: 3251808
Number of successful extensions: 9460
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 9410
Number of HSP's gapped (non-prelim): 75
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)