Query 028668
Match_columns 205
No_of_seqs 154 out of 570
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 15:06:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028668.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028668hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0439 VAMP-associated protei 100.0 2.8E-29 6.1E-34 212.2 14.1 176 25-204 16-218 (218)
2 COG5066 SCS2 VAMP-associated p 99.9 2.7E-26 5.8E-31 195.6 10.9 112 26-140 9-122 (242)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 4.5E-21 9.8E-26 144.5 11.9 95 26-125 10-108 (109)
4 PF14874 PapD-like: Flagellar- 98.0 4.7E-05 1E-09 56.8 9.1 58 26-83 11-71 (102)
5 PF00345 PapD_N: Pili and flag 96.1 0.092 2E-06 40.3 10.2 61 22-83 3-72 (122)
6 PF14646 MYCBPAP: MYCBP-associ 94.6 1.4 3E-05 41.4 14.4 116 21-157 234-362 (426)
7 PF07610 DUF1573: Protein of u 92.7 0.5 1.1E-05 30.8 5.7 43 40-83 2-45 (45)
8 PF11614 FixG_C: IG-like fold 90.0 1 2.2E-05 34.4 5.9 48 37-84 34-83 (118)
9 PF06030 DUF916: Bacterial pro 88.4 6 0.00013 31.1 9.3 66 18-83 11-101 (121)
10 PRK09918 putative fimbrial cha 87.1 6.3 0.00014 34.1 9.5 108 20-142 25-137 (230)
11 PRK15249 fimbrial chaperone pr 85.8 21 0.00046 31.4 12.3 87 20-113 29-126 (253)
12 PF06280 DUF1034: Fn3-like dom 84.1 2.7 5.8E-05 31.9 5.2 51 33-83 7-78 (112)
13 PRK11385 putativi pili assembl 80.0 41 0.00088 29.5 13.2 105 21-141 28-147 (236)
14 PF03173 CHB_HEX: Putative car 79.9 3.5 7.6E-05 34.3 4.7 33 51-83 68-102 (164)
15 PRK09926 putative chaperone pr 79.6 42 0.00091 29.4 11.6 87 20-113 26-122 (246)
16 TIGR03079 CH4_NH3mon_ox_B meth 78.4 6.7 0.00014 37.0 6.5 70 14-84 263-353 (399)
17 PF10633 NPCBM_assoc: NPCBM-as 77.9 4.1 8.9E-05 28.9 4.0 54 31-84 2-59 (78)
18 PF02883 Alpha_adaptinC2: Adap 77.8 9 0.0002 28.8 6.1 58 26-83 13-77 (115)
19 PRK15246 fimbrial assembly cha 77.8 47 0.001 29.0 13.3 112 19-142 10-134 (233)
20 smart00809 Alpha_adaptinC2 Ada 74.8 30 0.00066 25.3 9.3 51 33-83 17-71 (104)
21 PRK15192 fimbrial chaperone Bc 74.0 61 0.0013 28.4 12.9 105 21-141 24-142 (234)
22 PRK15295 fimbrial assembly cha 74.0 58 0.0013 28.2 11.0 107 20-141 20-136 (226)
23 PRK15211 fimbrial chaperone pr 73.2 38 0.00082 29.5 9.5 85 21-113 24-114 (229)
24 PF00927 Transglut_C: Transglu 72.0 18 0.00039 26.9 6.4 54 30-83 11-74 (107)
25 PRK15299 fimbrial chaperone pr 72.0 65 0.0014 27.8 13.1 110 19-141 22-140 (227)
26 PRK15233 putative fimbrial cha 71.3 66 0.0014 28.5 10.7 82 22-113 43-131 (246)
27 PRK15308 putative fimbrial pro 70.4 63 0.0014 28.4 10.3 88 18-115 15-120 (234)
28 PF05506 DUF756: Domain of unk 67.4 22 0.00047 25.9 5.9 44 37-83 21-65 (89)
29 PF11611 DUF4352: Domain of un 66.6 23 0.0005 26.3 6.1 51 34-84 36-100 (123)
30 PF12690 BsuPI: Intracellular 65.3 29 0.00063 25.4 6.1 22 36-57 2-23 (82)
31 PF04744 Monooxygenase_B: Mono 62.0 24 0.00053 33.3 6.3 53 31-84 260-334 (381)
32 PF04425 Bul1_N: Bul1 N termin 60.7 9.7 0.00021 36.5 3.6 94 14-113 144-292 (438)
33 PRK15224 pili assembly chapero 60.6 92 0.002 27.3 9.5 81 23-113 32-119 (237)
34 PRK15218 fimbrial chaperone pr 60.3 1.2E+02 0.0025 26.5 12.2 106 22-141 21-139 (226)
35 PRK15195 fimbrial chaperone pr 60.1 1.2E+02 0.0025 26.4 12.8 82 21-112 27-116 (229)
36 PF02753 PapD_C: Pili assembly 55.6 14 0.0003 25.4 2.9 44 40-83 1-45 (68)
37 PRK15253 putative fimbrial ass 53.7 1.6E+02 0.0034 26.0 9.8 106 22-141 36-154 (242)
38 PRK15208 long polar fimbrial c 52.2 1.6E+02 0.0034 25.5 12.7 86 20-113 22-113 (228)
39 PRK15274 putative periplasmic 51.4 1.7E+02 0.0038 26.0 9.7 83 23-113 30-121 (257)
40 PF08277 PAN_3: PAN-like domai 50.9 24 0.00053 24.1 3.5 27 27-54 45-71 (71)
41 PRK15285 putative fimbrial cha 46.9 2.1E+02 0.0045 25.4 11.2 82 23-112 29-119 (250)
42 PRK15290 lfpB fimbrial chapero 45.7 2.1E+02 0.0046 25.1 10.7 110 21-141 39-156 (243)
43 PF00553 CBM_2: Cellulose bind 45.2 43 0.00092 25.0 4.3 48 36-83 15-82 (101)
44 PF13473 Cupredoxin_1: Cupredo 44.9 1E+02 0.0022 22.7 6.3 49 25-83 34-82 (104)
45 PF11538 Snurportin1: Snurport 44.7 16 0.00035 23.8 1.6 15 185-199 15-29 (40)
46 PF05753 TRAP_beta: Translocon 44.3 1.2E+02 0.0025 25.6 7.2 51 32-83 36-95 (181)
47 PF06483 ChiC: Chitinase C; I 44.1 63 0.0014 27.6 5.5 19 66-84 123-141 (180)
48 PF07705 CARDB: CARDB; InterP 42.3 81 0.0018 22.1 5.3 53 31-83 16-69 (101)
49 PRK15188 fimbrial chaperone pr 42.0 2.4E+02 0.0051 24.6 13.3 108 21-142 29-145 (228)
50 COG3121 FimC P pilus assembly 41.9 2.3E+02 0.005 24.5 12.3 115 18-144 26-148 (235)
51 smart00637 CBD_II CBD_II domai 41.1 1.1E+02 0.0023 22.2 5.8 24 60-83 50-75 (92)
52 smart00605 CW CW domain. 36.5 60 0.0013 23.7 3.9 21 40-60 59-80 (94)
53 PHA01327 hypothetical protein 36.1 29 0.00063 23.1 1.8 13 184-196 20-32 (49)
54 PF11616 EZH2_WD-Binding: WD r 34.1 15 0.00034 22.5 0.3 10 182-191 18-27 (30)
55 PF11668 Gp_UL130: HCMV glycop 33.5 1.1E+02 0.0023 25.5 5.1 51 18-68 94-154 (156)
56 PRK15254 fimbrial chaperone pr 32.1 3.5E+02 0.0076 23.7 12.6 108 21-141 18-133 (239)
57 PF07233 DUF1425: Protein of u 31.3 2.2E+02 0.0047 21.1 7.4 61 22-83 13-80 (94)
58 TIGR02745 ccoG_rdxA_fixG cytoc 30.7 4.7E+02 0.01 25.1 9.7 50 35-84 347-398 (434)
59 PRK15249 fimbrial chaperone pr 30.0 1.2E+02 0.0026 26.7 5.3 43 38-81 176-219 (253)
60 PF03168 LEA_2: Late embryogen 27.5 2.2E+02 0.0048 19.9 5.9 45 39-83 1-51 (101)
61 KOG1769 Ubiquitin-like protein 21.8 1.1E+02 0.0024 23.7 3.1 26 36-61 19-44 (99)
62 PF09640 DUF2027: Domain of un 21.0 1.2E+02 0.0027 25.5 3.4 67 37-114 19-85 (162)
63 PF12086 DUF3563: Protein of u 20.9 60 0.0013 22.9 1.4 11 186-196 19-29 (59)
64 COG3121 FimC P pilus assembly 20.5 2.1E+02 0.0046 24.8 5.0 42 38-81 165-208 (235)
No 1
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.8e-29 Score=212.18 Aligned_cols=176 Identities=35% Similarity=0.475 Sum_probs=152.4
Q ss_pred CeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEE
Q 028668 25 PISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFK 104 (205)
Q Consensus 25 pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kDKFL 104 (205)
+|.|.+++.+++++.|+|+|+++.++|||||||+|++|+||||.|+|.||+++.|.|.+ +|. ...|.+++|+|||+
T Consensus 16 ~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~---q~~-~~~P~d~~~r~kF~ 91 (218)
T KOG0439|consen 16 ELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTH---QPF-EKSPPDFKSRHKFL 91 (218)
T ss_pred eEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEe---ccC-ccCchhhcccceEE
Confidence 79999999999999999999999999999999999999999999999999999999998 673 34577888999999
Q ss_pred EEEEEeCCC-CCChhhhhhccC--CCcceEEEeEEEEeCCCCCChhHHHH---HHhhhhHHHHHHhhCCCCCCC---CCc
Q 028668 105 IISMKVKAD-VDYVPELFDEQK--DQTAAEQILRVVFLNPERPEPALEKL---KRQLADADAAVAARKKPPEDT---GPR 175 (205)
Q Consensus 105 Iqs~~v~~~-~d~~~elfk~~~--~~~i~e~KLrV~f~~p~~ps~~~e~l---~~~l~~a~~~~~~~~~~~~~~---~~~ 175 (205)
||++.++.+ .....++|+..+ +..+.+.+++|.|+.|..+....+.. .++.....+...+........ .+.
T Consensus 92 v~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (218)
T KOG0439|consen 92 IQSLKAPPPTTRDVVDLWKFQKETPKESFETKLRVVFVAPTETDSVVAKLQKAKKKEAEKEAFGEATKEASDGEVCVKSK 171 (218)
T ss_pred EEEEecCCccccchhhhccccccccccccceeeEEEeeCCCCCcccccccccccccCCccccccccccccCcccccchhh
Confidence 999999986 567899999988 78889999999999987776655555 556677777777777776543 577
Q ss_pred eeccceeechh------------------hHhHHHHHHHhhhcccCC
Q 028668 176 IIGEGLVIDEW------------------KERRERYLARQQVEGVDS 204 (205)
Q Consensus 176 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~ 204 (205)
..++++++++| +++++++++.+|.+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (218)
T KOG0439|consen 172 EFGEKLELKEELKAFKLKANKVDEERLLKKKKEGRLLAELQAELVIS 218 (218)
T ss_pred hhhccccchhhhhccccccccccccchhhhhhhHHHHHhhhhhhccC
Confidence 88999999999 899999999999876543
No 2
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.93 E-value=2.7e-26 Score=195.60 Aligned_cols=112 Identities=22% Similarity=0.310 Sum_probs=103.3
Q ss_pred eeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEE
Q 028668 26 ISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKI 105 (205)
Q Consensus 26 L~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kDKFLI 105 (205)
+.|.-++...+++.+-|.|++..+|+||||||+|+.||||||.|+|.|++++.|.|+| +++..++..+.+|+|||||
T Consensus 9 ~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVil---q~l~eEpapdfKCrdKFLi 85 (242)
T COG5066 9 TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVIL---QGLTEEPAPDFKCRDKFLI 85 (242)
T ss_pred eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEe---eccccCCCCCccccceeEE
Confidence 5666678899999999999999999999999999999999999999999999999999 7888888889999999999
Q ss_pred EEEEeCCCC--CChhhhhhccCCCcceEEEeEEEEeC
Q 028668 106 ISMKVKADV--DYVPELFDEQKDQTAAEQILRVVFLN 140 (205)
Q Consensus 106 qs~~v~~~~--d~~~elfk~~~~~~i~e~KLrV~f~~ 140 (205)
|++..+.+. .+..++|+...+.-|+++|++|+|..
T Consensus 86 qs~~~~~~l~g~d~ad~wt~~sk~~i~~rkIrcvyse 122 (242)
T COG5066 86 QSYRFDWRLSGSDFADHWTSSSKKPIWTRKIRCVYSE 122 (242)
T ss_pred EEeccChhhccchHHHHHHhhccccchhhheeEEeec
Confidence 999998654 45699999999888999999999984
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.86 E-value=4.5e-21 Score=144.53 Aligned_cols=95 Identities=31% Similarity=0.422 Sum_probs=75.3
Q ss_pred eeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEE
Q 028668 26 ISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKI 105 (205)
Q Consensus 26 L~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kDKFLI 105 (205)
+.|..++++..++.|+|+|+|+.+||||||||+|.+|+|+|+.|+|.||+++.|.|++ ++..... . ...+|||+|
T Consensus 10 i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~---~~~~~~~-~-~~~~dkf~I 84 (109)
T PF00635_consen 10 IFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITF---QPFDFEP-S-NKKKDKFLI 84 (109)
T ss_dssp EEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE----SSSTTT-T-STSSEEEEE
T ss_pred eEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEE---EecccCC-C-CCCCCEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999 5644332 1 223999999
Q ss_pred EEEEeCCCCC----ChhhhhhccC
Q 028668 106 ISMKVKADVD----YVPELFDEQK 125 (205)
Q Consensus 106 qs~~v~~~~d----~~~elfk~~~ 125 (205)
+++.++++.. ....+|++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~ 108 (109)
T PF00635_consen 85 QSIVVPDNATDPKKDFKQIWKNGK 108 (109)
T ss_dssp EEEEE-TT-SSSHHHHHCCHHHSS
T ss_pred EEEEcCCCccchhhhHHHHHhccC
Confidence 9999987753 3566777654
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.03 E-value=4.7e-05 Score=56.78 Aligned_cols=58 Identities=24% Similarity=0.352 Sum_probs=50.0
Q ss_pred eeee-cCCCCeEEEEEEEEcCCCCeEEEEEeeCC--CcceeecCCceeeCCCCeEEEEEEe
Q 028668 26 ISST-FPAGKQVRSAIKIKNTSKSHVAFKFQTTA--PKSCFMRPPGAILAPGESLIATVFK 83 (205)
Q Consensus 26 L~F~-~e~~k~~s~~LtLtN~S~~~VAFKVKTTa--Pk~Y~VRP~~GiI~Pges~~I~Vtl 83 (205)
|.|- ...+...+..|+|+|.|..+..|+|+... ...|.|.|..|.|+||++..+.|++
T Consensus 11 ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~ 71 (102)
T PF14874_consen 11 LDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTF 71 (102)
T ss_pred EEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEE
Confidence 4443 34778889999999999999999998643 5689999999999999999999999
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=96.12 E-value=0.092 Score=40.33 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=50.7
Q ss_pred ceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCC----C-----cceeecCCceeeCCCCeEEEEEEe
Q 028668 22 LILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTA----P-----KSCFMRPPGAILAPGESLIATVFK 83 (205)
Q Consensus 22 ~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTa----P-----k~Y~VRP~~GiI~Pges~~I~Vtl 83 (205)
.|.|.++.+..++ .+..++|+|.++.++.+.+.... + ..|.|-|+.-.|+||++..|.|..
T Consensus 3 ~i~~trii~~~~~-~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv~~ 72 (122)
T PF00345_consen 3 QISPTRIIFNESQ-RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRVYR 72 (122)
T ss_dssp EESSSEEEEETTS-SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEEEE
T ss_pred EEccEEEEEeCCC-CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEEEe
Confidence 3667778888755 47899999999999999988653 1 268999999999999999999943
No 6
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=94.58 E-value=1.4 Score=41.39 Aligned_cols=116 Identities=13% Similarity=0.263 Sum_probs=78.8
Q ss_pred cceeCeeeecCCCCeEEEEEE-EEcCCCCeEEEEEeeCC------------CcceeecCCceeeCCCCeEEEEEEeeccC
Q 028668 21 SLILPISSTFPAGKQVRSAIK-IKNTSKSHVAFKFQTTA------------PKSCFMRPPGAILAPGESLIATVFKFVEL 87 (205)
Q Consensus 21 ~~i~pL~F~~e~~k~~s~~Lt-LtN~S~~~VAFKVKTTa------------Pk~Y~VRP~~GiI~Pges~~I~Vtl~~~~ 87 (205)
....-+.|.-.++......|. |.|.+...|-|..+--. ...|......|+|.||++..+.|++ +
T Consensus 234 ~~~~~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F---~ 310 (426)
T PF14646_consen 234 SISIRLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMF---K 310 (426)
T ss_pred CcceEEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEE---e
Confidence 344568999999998888888 99999999999976432 4678999999999999999999998 4
Q ss_pred CCCCCCCCCCCCCceEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCCCCChhHHHHHHhhhh
Q 028668 88 PENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERPEPALEKLKRQLAD 157 (205)
Q Consensus 88 p~~~e~p~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~~~i~e~KLrV~f~~p~~ps~~~e~l~~~l~~ 157 (205)
|... ...++...+..-+. +|. ......+|..+-+++..-....+.+++.|++
T Consensus 311 s~~~-----Gif~E~W~L~t~P~---------l~~----~~~l~v~L~G~~~~~~~~~~~~~~~~~~l~~ 362 (426)
T PF14646_consen 311 SRKV-----GIFKERWELRTFPP---------LFG----GASLTVRLHGVCTPPDEYLDKRKMLEEELAR 362 (426)
T ss_pred CCCc-----eEEEEEEEEEEecc---------ccC----CCceEEEEEEEEcCchHhHHHHHHHHHHHHH
Confidence 5321 22345555554322 222 1124567777766664444455555555533
No 7
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=92.69 E-value=0.5 Score=30.84 Aligned_cols=43 Identities=26% Similarity=0.171 Sum_probs=34.5
Q ss_pred EEEEcCCCCeEE-EEEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028668 40 IKIKNTSKSHVA-FKFQTTAPKSCFMRPPGAILAPGESLIATVFK 83 (205)
Q Consensus 40 LtLtN~S~~~VA-FKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl 83 (205)
++++|.++.++. .+|+|+ =+-..+..+...|.||++..|.|++
T Consensus 2 F~~~N~g~~~L~I~~v~ts-CgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTS-CGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEc-cCCEEeeCCcceECCCCEEEEEEEC
Confidence 689999987654 566654 6777888888999999999999873
No 8
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=89.99 E-value=1 Score=34.44 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=34.2
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCCcceee-cCCce-eeCCCCeEEEEEEee
Q 028668 37 RSAIKIKNTSKSHVAFKFQTTAPKSCFM-RPPGA-ILAPGESLIATVFKF 84 (205)
Q Consensus 37 s~~LtLtN~S~~~VAFKVKTTaPk~Y~V-RP~~G-iI~Pges~~I~Vtl~ 84 (205)
.-+|+|.|.+.++..|.|+...+..+.+ .+... .|.||++..+.|.+.
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEE
Confidence 3789999999999999999988888888 66444 599999999888873
No 9
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=88.43 E-value=6 Score=31.12 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=46.6
Q ss_pred ccccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEe-----eCCCcc--eeec------------------CCceeeC
Q 028668 18 AVSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQ-----TTAPKS--CFMR------------------PPGAILA 72 (205)
Q Consensus 18 ~~~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVK-----TTaPk~--Y~VR------------------P~~GiI~ 72 (205)
.+.-......+...+++..+-.++|+|.|++.+.|++. |+..+. |.-. |..-.|+
T Consensus 11 Q~~~~~~YFdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~ 90 (121)
T PF06030_consen 11 QIDKNVSYFDLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLP 90 (121)
T ss_pred ccCCCCCeEEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEEC
Confidence 33444555677889999999999999999999999986 333332 2111 2224678
Q ss_pred CCCeEEEEEEe
Q 028668 73 PGESLIATVFK 83 (205)
Q Consensus 73 Pges~~I~Vtl 83 (205)
|+++..|.+++
T Consensus 91 ~~~sk~V~~~i 101 (121)
T PF06030_consen 91 PNESKTVTFTI 101 (121)
T ss_pred CCCEEEEEEEE
Confidence 88888877776
No 10
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=87.07 E-value=6.3 Score=34.14 Aligned_cols=108 Identities=16% Similarity=0.132 Sum_probs=69.1
Q ss_pred ccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCC-----cceeecCCceeeCCCCeEEEEEEeeccCCCCCCCC
Q 028668 20 SSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAP-----KSCFMRPPGAILAPGESLIATVFKFVELPENNEKP 94 (205)
Q Consensus 20 ~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaP-----k~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p 94 (205)
...+.+.++.|.. ++...+++|+|.++.++......... .-|.|-|+.-.|+||++..|.|.+. . ..|
T Consensus 25 ~v~l~~tRvi~~~-~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~---~---~lp 97 (230)
T PRK09918 25 GMVPETSVVIVEE-SDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILK---S---GSP 97 (230)
T ss_pred eEEEccEEEEEEC-CCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEEC---C---CCC
Confidence 4556777887775 55778999999998876665543211 2599999999999999999999872 1 123
Q ss_pred CCCCCCceEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCC
Q 028668 95 MYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 142 (205)
Q Consensus 95 ~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~~~i~e~KLrV~f~~p~ 142 (205)
.+. ..-|.+....++...+. +..=+.....++++-|-+..
T Consensus 98 ~dr--Es~f~l~v~~IP~~~~~------~~~l~ia~r~~iklfyRP~~ 137 (230)
T PRK09918 98 LNT--EHLLRVSFEGVPPKPGG------KNKVVMPIRQDLPVLIQPAA 137 (230)
T ss_pred CCe--eEEEEEEEEEcCCCCCC------CCEEEEEEEeEEEEEEeCCC
Confidence 322 23577777777754321 11112223556676665543
No 11
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=85.77 E-value=21 Score=31.40 Aligned_cols=87 Identities=16% Similarity=0.202 Sum_probs=59.0
Q ss_pred ccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCC------C-----cceeecCCceeeCCCCeEEEEEEeeccCC
Q 028668 20 SSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTA------P-----KSCFMRPPGAILAPGESLIATVFKFVELP 88 (205)
Q Consensus 20 ~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTa------P-----k~Y~VRP~~GiI~Pges~~I~Vtl~~~~p 88 (205)
...|.+.++.|..++ ...+|+|.|.++.++.-..-+.. | .-|.|-|+.--|+||+...|.|... .
T Consensus 29 ~l~l~~TRviy~~~~-~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~---~ 104 (253)
T PRK15249 29 SVTILGSRIIYPSTA-SSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN---N 104 (253)
T ss_pred EEEeCceEEEEeCCC-cceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc---C
Confidence 356788899997665 67889999999876554442211 1 1399999999999999999999972 1
Q ss_pred CCCCCCCCCCCCceEEEEEEEeCCC
Q 028668 89 ENNEKPMYQKSRDKFKIISMKVKAD 113 (205)
Q Consensus 89 ~~~e~p~~~~~kDKFLIqs~~v~~~ 113 (205)
....|.+.. --|.+....+++.
T Consensus 105 -~~~lP~DRE--Slf~lnv~eIP~~ 126 (253)
T PRK15249 105 -TKKLPQDRE--SVFWFNVLQVPPT 126 (253)
T ss_pred -CCCCCCCce--EEEEEEeeecCCC
Confidence 111233322 3466666666653
No 12
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=84.09 E-value=2.7 Score=31.87 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=32.8
Q ss_pred CCeEEEEEEEEcCCCCeEEEEEeeC-----C---Ccceee-------------cCCceeeCCCCeEEEEEEe
Q 028668 33 GKQVRSAIKIKNTSKSHVAFKFQTT-----A---PKSCFM-------------RPPGAILAPGESLIATVFK 83 (205)
Q Consensus 33 ~k~~s~~LtLtN~S~~~VAFKVKTT-----a---Pk~Y~V-------------RP~~GiI~Pges~~I~Vtl 83 (205)
+...+.+|+|+|.++..+.|++.-. . .+.|.. -|..=.|.||++..|.|++
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti 78 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTI 78 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEE
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEE
Confidence 4557889999999999999997644 1 122221 1223368999999999998
No 13
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=80.00 E-value=41 Score=29.46 Aligned_cols=105 Identities=16% Similarity=0.286 Sum_probs=67.5
Q ss_pred cceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEee--C------------CCcceeecCCceeeCCCCeEEEEEEeecc
Q 028668 21 SLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQT--T------------APKSCFMRPPGAILAPGESLIATVFKFVE 86 (205)
Q Consensus 21 ~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKT--T------------aPk~Y~VRP~~GiI~Pges~~I~Vtl~~~ 86 (205)
+.+...++-|.. .....+++|.|.++.+ |=|++ . ...-|.|-|+.--|+||+...+.|...
T Consensus 28 v~l~~TRvIy~~-~~~~~sv~l~N~~~~p--~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~-- 102 (236)
T PRK11385 28 VVVGGTRFIFPA-DRESISILLTNTSQES--WLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRT-- 102 (236)
T ss_pred EEeCceEEEEcC-CCceEEEEEEeCCCCc--EEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEEC--
Confidence 456677888876 4467889999999886 44444 1 112499999999999999999999982
Q ss_pred CCCCCCCCCCCCCCceEEEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCC
Q 028668 87 LPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNP 141 (205)
Q Consensus 87 ~p~~~e~p~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~-~~i~e~KLrV~f~~p 141 (205)
.. ...|.+. ..-|.+....+++..+. ... ......+||+-|-+.
T Consensus 103 -~~-~~LP~DR--ESlf~lnv~~IPp~~~~-------~n~L~iair~riKLFyRP~ 147 (236)
T PRK11385 103 -ES-DILPVDR--ETLFELSIASVPSGKVE-------NQSVKVAMRSVFKLFWRPE 147 (236)
T ss_pred -CC-CCCCCCc--eEEEEEEEEecCCCcCC-------CceEEEEEEeeEEEEEccc
Confidence 11 1123332 34677777777764221 111 223366777777554
No 14
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=79.86 E-value=3.5 Score=34.34 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=25.8
Q ss_pred EEEEeeCCCcceeecCCcee--eCCCCeEEEEEEe
Q 028668 51 AFKFQTTAPKSCFMRPPGAI--LAPGESLIATVFK 83 (205)
Q Consensus 51 AFKVKTTaPk~Y~VRP~~Gi--I~Pges~~I~Vtl 83 (205)
.|+|.-=+-+.|++.|..|+ |+||+++.|.+.-
T Consensus 68 ~f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~ 102 (164)
T PF03173_consen 68 QFKITHINGDLHKLTPTAGFKGLAPGESLEIPFVG 102 (164)
T ss_dssp TEEEEE-STTEEEEEE-TT---B-TTEEEEEEEEE
T ss_pred CeEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEc
Confidence 37888888899999999997 8999999999885
No 15
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=79.58 E-value=42 Score=29.36 Aligned_cols=87 Identities=10% Similarity=0.143 Sum_probs=59.9
Q ss_pred ccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCc----------ceeecCCceeeCCCCeEEEEEEeeccCCC
Q 028668 20 SSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPK----------SCFMRPPGAILAPGESLIATVFKFVELPE 89 (205)
Q Consensus 20 ~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk----------~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~ 89 (205)
...+.+.++.|..+ ....+++|.|.++.++.--.-...-+ -|.|-|+.--|+||+...|.|... ..
T Consensus 26 ~i~l~~TRvI~~~~-~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~---~~ 101 (246)
T PRK09926 26 DIVISGTRIIYKSD-QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYT---AS 101 (246)
T ss_pred eEEeCceEEEEeCC-CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeC---CC
Confidence 35677788888864 46788999999988766554433211 399999999999999999999972 21
Q ss_pred CCCCCCCCCCCceEEEEEEEeCCC
Q 028668 90 NNEKPMYQKSRDKFKIISMKVKAD 113 (205)
Q Consensus 90 ~~e~p~~~~~kDKFLIqs~~v~~~ 113 (205)
...|.+. ..-|.+....+++.
T Consensus 102 -~~lP~Dr--ESlf~lnv~eIP~~ 122 (246)
T PRK09926 102 -TALPKDR--ESVFWFNVLEVPPK 122 (246)
T ss_pred -CCCCCCc--eEEEEEEeeecCCC
Confidence 0123332 23577777777763
No 16
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=78.42 E-value=6.7 Score=37.01 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=47.5
Q ss_pred CCCCccccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcce-------eecCCce--------------eeC
Q 028668 14 YPNGAVSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSC-------FMRPPGA--------------ILA 72 (205)
Q Consensus 14 ~~~~~~~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y-------~VRP~~G--------------iI~ 72 (205)
++.+.|.+-|..-... -+++..+-++++||.++++|-.+==||+.-+| ...|++. -|.
T Consensus 263 ~~~~~V~~kv~~a~Y~-VPGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~ 341 (399)
T TIGR03079 263 VAPNPVSINVTKANYD-VPGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIA 341 (399)
T ss_pred CCCCceEEEEeccEEe-cCCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcC
Confidence 4444444444443332 37899999999999999999887555544433 3333332 389
Q ss_pred CCCeEEEEEEee
Q 028668 73 PGESLIATVFKF 84 (205)
Q Consensus 73 Pges~~I~Vtl~ 84 (205)
|||+.+|.|..+
T Consensus 342 PGETr~v~v~aq 353 (399)
T TIGR03079 342 PGETVEVKMEAK 353 (399)
T ss_pred CCcceEEEEEEe
Confidence 999999999984
No 17
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=77.88 E-value=4.1 Score=28.87 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=32.8
Q ss_pred CCCCeEEEEEEEEcCCCCeE-EEEEeeCCCccee--ecCCce-eeCCCCeEEEEEEee
Q 028668 31 PAGKQVRSAIKIKNTSKSHV-AFKFQTTAPKSCF--MRPPGA-ILAPGESLIATVFKF 84 (205)
Q Consensus 31 e~~k~~s~~LtLtN~S~~~V-AFKVKTTaPk~Y~--VRP~~G-iI~Pges~~I~Vtl~ 84 (205)
.+|...+-.++++|.+..++ ..++.-+.|.-.. ..|... -|.||++..+++.+.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~ 59 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVT 59 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEE
Confidence 36778889999999986543 3555555688777 445443 799999999998883
No 18
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=77.79 E-value=9 Score=28.78 Aligned_cols=58 Identities=26% Similarity=0.447 Sum_probs=40.0
Q ss_pred eeeecCC---CCeEEEEEEEEcCCCCeEE-EEEeeCCCcceeec--CC-ceeeCCCCeEEEEEEe
Q 028668 26 ISSTFPA---GKQVRSAIKIKNTSKSHVA-FKFQTTAPKSCFMR--PP-GAILAPGESLIATVFK 83 (205)
Q Consensus 26 L~F~~e~---~k~~s~~LtLtN~S~~~VA-FKVKTTaPk~Y~VR--P~-~GiI~Pges~~I~Vtl 83 (205)
+.|.+.. +....-.++..|.+..++. |.++-..|+.|.++ |. ...|.|+..++-.+.+
T Consensus 13 I~~~~~~~~~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v 77 (115)
T PF02883_consen 13 IGFKSEKSPNPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKV 77 (115)
T ss_dssp EEEEEEECCETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEE
T ss_pred EEEEEEecCCCCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEE
Confidence 4455543 5578889999999988777 88887667766655 55 5599999888877776
No 19
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=77.76 E-value=47 Score=28.96 Aligned_cols=112 Identities=12% Similarity=0.168 Sum_probs=70.1
Q ss_pred cccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEee--C-C-----Cc----ceeecCCceeeCCCCeEEEEEEeecc
Q 028668 19 VSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQT--T-A-----PK----SCFMRPPGAILAPGESLIATVFKFVE 86 (205)
Q Consensus 19 ~~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKT--T-a-----Pk----~Y~VRP~~GiI~Pges~~I~Vtl~~~ 86 (205)
=.+.|.+.++-|..+ ....+++|.|.++.+ |-|++ . . |. -|.|-|+.--|+||+...|.|...
T Consensus 10 A~v~l~~TRvI~~~~-~~~~sv~l~N~~~~p--~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~-- 84 (233)
T PRK15246 10 AAVNIDRTRIIFASD-DVAQSLTLSNDNTTP--MLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLS-- 84 (233)
T ss_pred EEEEECceEEEEcCC-CceEEEEEEeCCCCc--EEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEEC--
Confidence 346677888888874 567899999999876 44444 1 1 11 499999999999999999999972
Q ss_pred CCCCCCCCCCCCCCceEEEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCCC
Q 028668 87 LPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPE 142 (205)
Q Consensus 87 ~p~~~e~p~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~-~~i~e~KLrV~f~~p~ 142 (205)
.. ...|.+. .--|.+....+++..+... ++... +.....+|++-|-+..
T Consensus 85 -~~-~~LP~DR--ESlf~lnv~~IP~~~~~~~---~~~~~l~iair~rIKlFyRP~~ 134 (233)
T PRK15246 85 -SR-QQLATDR--ESLFWLNIYQIPPVTQDIK---NHPRKLVLPLRLRLKILIRPTG 134 (233)
T ss_pred -CC-CCCCCCc--eEEEEEEEEEcCCCCcccc---cccceEEEEeeeEEEEEECCcc
Confidence 11 1123322 2357777777776432200 00011 2223667777676543
No 20
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=74.83 E-value=30 Score=25.26 Aligned_cols=51 Identities=29% Similarity=0.524 Sum_probs=39.8
Q ss_pred CCeEEEEEEEEcCCCCeEE-EEEeeCCCcceeec--CCce-eeCCCCeEEEEEEe
Q 028668 33 GKQVRSAIKIKNTSKSHVA-FKFQTTAPKSCFMR--PPGA-ILAPGESLIATVFK 83 (205)
Q Consensus 33 ~k~~s~~LtLtN~S~~~VA-FKVKTTaPk~Y~VR--P~~G-iI~Pges~~I~Vtl 83 (205)
+....-.+...|.+..++. |.++-..|+.+.++ |..| .|.||+.+.-.+.+
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i 71 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKV 71 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEE
Confidence 4467889999999987776 88888888888776 5544 89999886666665
No 21
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=74.03 E-value=61 Score=28.40 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=67.2
Q ss_pred cceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeC----------C----CcceeecCCceeeCCCCeEEEEEEeecc
Q 028668 21 SLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTT----------A----PKSCFMRPPGAILAPGESLIATVFKFVE 86 (205)
Q Consensus 21 ~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTT----------a----Pk~Y~VRP~~GiI~Pges~~I~Vtl~~~ 86 (205)
+.+...++-|..+ ....+++|.|.++.+ |=|++. . ..-|.|-|+.--|+||+...+.|...
T Consensus 24 i~l~~TRvIy~~~-~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~~-- 98 (234)
T PRK15192 24 VVIGGTRFIYHAG-APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYT-- 98 (234)
T ss_pred EEeCceEEEEcCC-CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEEC--
Confidence 4556677888774 467789999999875 556651 1 11399999999999999999999982
Q ss_pred CCCCCCCCCCCCCCceEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCC
Q 028668 87 LPENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNP 141 (205)
Q Consensus 87 ~p~~~e~p~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~~~i~e~KLrV~f~~p 141 (205)
.. ..|.+. .--|.+....+++..+. ++ .=......+||+-|-+.
T Consensus 99 -~~--~LP~DR--ESlf~lnv~~IPp~~~~-----~n-~l~iair~riKlFYRP~ 142 (234)
T PRK15192 99 -GA--PLPADR--ESLFTLSIAAIPSGKPE-----AN-RVQMAFRSALKLLYRPE 142 (234)
T ss_pred -CC--CCCCcc--eEEEEEEEEecCCCCCC-----Cc-EEEEEEEeeeeEEEccc
Confidence 21 123332 34677777777763221 11 11222356677766654
No 22
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=73.97 E-value=58 Score=28.16 Aligned_cols=107 Identities=13% Similarity=0.187 Sum_probs=67.5
Q ss_pred ccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEee--CC-------CcceeecCCceeeCCCCeEEEEEEeeccCCCC
Q 028668 20 SSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQT--TA-------PKSCFMRPPGAILAPGESLIATVFKFVELPEN 90 (205)
Q Consensus 20 ~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKT--Ta-------Pk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~ 90 (205)
...+.+.++-|+.++ ...+++|.|.++.+ |=|++ .. ..-|.|-|+.--|+||+...|.|... ..
T Consensus 20 ~i~l~~TRvI~~~~~-~~~si~i~N~~~~p--~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~---~~- 92 (226)
T PRK15295 20 SIVVGGTRLVFDGNN-DESSINVENKDSKA--NLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRS---GA- 92 (226)
T ss_pred cEEeCceEEEEeCCC-ceeEEEEEeCCCCc--EEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEEC---CC-
Confidence 356778888888865 47889999998875 44553 11 12499999999999999999999872 11
Q ss_pred CCCCCCCCCCceEEEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCC
Q 028668 91 NEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNP 141 (205)
Q Consensus 91 ~e~p~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~-~~i~e~KLrV~f~~p 141 (205)
..|.+. ..-|.+....+++..+. +.... +.....+|++-|-+.
T Consensus 93 -~LP~Dr--Eslf~lnv~~IP~~~~~-----~~~n~l~iair~rIKLFyRP~ 136 (226)
T PRK15295 93 -PLPADR--ESMYWLNIKGIPSIDDN-----ASANRVEISINTQIKLIYRPP 136 (226)
T ss_pred -CCCCCc--eEEEEEEEEEcCCCCCc-----CccceEEEEeeeeeeEEEchh
Confidence 113222 23577777777764221 01111 223356666666554
No 23
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=73.19 E-value=38 Score=29.54 Aligned_cols=85 Identities=12% Similarity=0.129 Sum_probs=57.8
Q ss_pred cceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCC------CcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCC
Q 028668 21 SLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTA------PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKP 94 (205)
Q Consensus 21 ~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTa------Pk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p 94 (205)
+.+...++-|+.++ ...+++|+|.++.++.-...... .--|.|-|+.--|+||+...|.|.. ... ..|
T Consensus 24 v~l~~TRvIy~~~~-~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~---~~~--~LP 97 (229)
T PRK15211 24 FVLNGTRFIYDEGR-KNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMK---TDS--ALP 97 (229)
T ss_pred EEECceEEEEcCCC-ceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEE---CCC--CCC
Confidence 55667788888644 57899999999886443332211 1249999999999999999999997 221 123
Q ss_pred CCCCCCceEEEEEEEeCCC
Q 028668 95 MYQKSRDKFKIISMKVKAD 113 (205)
Q Consensus 95 ~~~~~kDKFLIqs~~v~~~ 113 (205)
.+. ..-|.+....+++.
T Consensus 98 ~DR--ESlf~lnv~~IP~~ 114 (229)
T PRK15211 98 KDR--ESLFWLNVQEIPPK 114 (229)
T ss_pred CCc--eEEEEEEEEEcCCC
Confidence 332 33677777777653
No 24
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=71.97 E-value=18 Score=26.93 Aligned_cols=54 Identities=20% Similarity=0.192 Sum_probs=39.4
Q ss_pred cCCCCeEEEEEEEEcCCCCe--------EEEEEeeCCCc--ceeecCCceeeCCCCeEEEEEEe
Q 028668 30 FPAGKQVRSAIKIKNTSKSH--------VAFKFQTTAPK--SCFMRPPGAILAPGESLIATVFK 83 (205)
Q Consensus 30 ~e~~k~~s~~LtLtN~S~~~--------VAFKVKTTaPk--~Y~VRP~~GiI~Pges~~I~Vtl 83 (205)
...|+.....++++|+++.+ -|+-|--|.=- ....+-..+.|.||++..+.+.+
T Consensus 11 ~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i 74 (107)
T PF00927_consen 11 PVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTI 74 (107)
T ss_dssp EBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEE
Confidence 34789999999999999877 45555444322 25677888999999999999998
No 25
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=71.96 E-value=65 Score=27.79 Aligned_cols=110 Identities=10% Similarity=0.124 Sum_probs=70.4
Q ss_pred cccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCC--------CcceeecCCceeeCCCCeEEEEEEeeccCCCC
Q 028668 19 VSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTA--------PKSCFMRPPGAILAPGESLIATVFKFVELPEN 90 (205)
Q Consensus 19 ~~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTa--------Pk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~ 90 (205)
-...+.+.++-|+.++ ...+|+|+|.++.++.-..-+.. ..-|.|-|+.--|+||+...|.|... ..
T Consensus 22 a~i~l~~TRvi~~~~~-~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~---~~- 96 (227)
T PRK15299 22 AGINIGTTRVIFHGDA-KDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRT---GG- 96 (227)
T ss_pred eeEEECceEEEEeCCC-cEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEEC---CC-
Confidence 3466788899998884 57899999998876444432211 12399999999999999999999872 11
Q ss_pred CCCCCCCCCCceEEEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCC
Q 028668 91 NEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNP 141 (205)
Q Consensus 91 ~e~p~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~-~~i~e~KLrV~f~~p 141 (205)
..|.+. ..-|.+....+++..+. ..... ......+|++-|-++
T Consensus 97 -~lP~Dr--Eslf~lnv~eIP~~~~~-----~~~n~l~iavr~riKLfyRP~ 140 (227)
T PRK15299 97 -NLPEDR--ESLYWLDIKSIPSSNPD-----NKHNTLMLAVKAEFKLIYRPK 140 (227)
T ss_pred -CCCCcc--eEEEEEEeEecCCCCcc-----cccceEEEEEeeeeeEEEccc
Confidence 123332 23577777777764221 00111 223466777777655
No 26
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=71.31 E-value=66 Score=28.51 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=56.7
Q ss_pred ceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEee---CC----CcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCC
Q 028668 22 LILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQT---TA----PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKP 94 (205)
Q Consensus 22 ~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKT---Ta----Pk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p 94 (205)
.+.-.++-|+.++ ...+++|.|.++.+ |-|++ +. ..-|.|.|+.--|+||+...+.|... . ...|
T Consensus 43 ~l~~TRvIy~~~~-~~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~---~--~~LP 114 (246)
T PRK15233 43 RLGTTRVIYKEDA-PSTSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPT---S--NLFN 114 (246)
T ss_pred EeCceEEEEeCCC-cEEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEEC---C--CCCC
Confidence 3444677777776 67889999987766 55555 11 12499999999999999999999982 1 1223
Q ss_pred CCCCCCceEEEEEEEeCCC
Q 028668 95 MYQKSRDKFKIISMKVKAD 113 (205)
Q Consensus 95 ~~~~~kDKFLIqs~~v~~~ 113 (205)
.|.. --|.+....+++.
T Consensus 115 ~DRE--Slfwlnv~~IPp~ 131 (246)
T PRK15233 115 KNEE--SLYWLCVKGVPPL 131 (246)
T ss_pred cCce--EEEEEEEEEcCCC
Confidence 3322 2577777777764
No 27
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=70.35 E-value=63 Score=28.43 Aligned_cols=88 Identities=15% Similarity=0.282 Sum_probs=66.1
Q ss_pred ccccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEee---CCC---------------cceeecCCceeeCCCCeEEE
Q 028668 18 AVSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQT---TAP---------------KSCFMRPPGAILAPGESLIA 79 (205)
Q Consensus 18 ~~~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKT---TaP---------------k~Y~VRP~~GiI~Pges~~I 79 (205)
+-...|.|+.-..+.+.+....++|+|.++++..++|.. ++| ..-.+-|+.-+|.||++..|
T Consensus 15 aa~l~V~Pi~~~i~a~~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~I 94 (234)
T PRK15308 15 RANMLVYPMAAEIGAGREEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRTV 94 (234)
T ss_pred hceEEEEEeEEEecCCCcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEEE
Confidence 345578899999999888999999999999988887763 332 13567899999999999999
Q ss_pred EEEeeccCCCCCCCCCCCCCCceEEEEEEEeCCCCC
Q 028668 80 TVFKFVELPENNEKPMYQKSRDKFKIISMKVKADVD 115 (205)
Q Consensus 80 ~Vtl~~~~p~~~e~p~~~~~kDKFLIqs~~v~~~~d 115 (205)
.+... .+ + ....-|+|...+++...+
T Consensus 95 Rli~l--g~-----~---~kE~~YRl~~~pvp~~~~ 120 (234)
T PRK15308 95 RVISL--QA-----P---EREEAWRVYFEPVAELED 120 (234)
T ss_pred EEEEc--CC-----C---CcEEEEEEEEEecCCccc
Confidence 98862 11 1 123468888888875443
No 28
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=67.39 E-value=22 Score=25.90 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=31.6
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCCccee-ecCCceeeCCCCeEEEEEEe
Q 028668 37 RSAIKIKNTSKSHVAFKFQTTAPKSCF-MRPPGAILAPGESLIATVFK 83 (205)
Q Consensus 37 s~~LtLtN~S~~~VAFKVKTTaPk~Y~-VRP~~GiI~Pges~~I~Vtl 83 (205)
.-.|+|.|.+...+.|.|... .|. -.|-.=.|.||++..+..-+
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~---~y~~~~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDN---AYGGGGPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeC---CcCCCCCEEEEECCCCEEEEEEee
Confidence 668999999999999999872 122 33444456668887777765
No 29
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=66.61 E-value=23 Score=26.33 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=32.2
Q ss_pred CeEEEEEEEEcCCCCeEE-----EEEeeCCCcceeecC---------CceeeCCCCeEEEEEEee
Q 028668 34 KQVRSAIKIKNTSKSHVA-----FKFQTTAPKSCFMRP---------PGAILAPGESLIATVFKF 84 (205)
Q Consensus 34 k~~s~~LtLtN~S~~~VA-----FKVKTTaPk~Y~VRP---------~~GiI~Pges~~I~Vtl~ 84 (205)
+-+.-.++++|.++..+. |++.+..-..|.... ..+-|.||+++.-.+...
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~ 100 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFE 100 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEE
Confidence 346688999999987776 788877766666443 457999999999999884
No 30
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=65.32 E-value=29 Score=25.42 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=15.2
Q ss_pred EEEEEEEEcCCCCeEEEEEeeC
Q 028668 36 VRSAIKIKNTSKSHVAFKFQTT 57 (205)
Q Consensus 36 ~s~~LtLtN~S~~~VAFKVKTT 57 (205)
+.-.|+|+|.++..|-+.+-|.
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sg 23 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSG 23 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS
T ss_pred EEEEEEEEeCCCCeEEEEeCCC
Confidence 4568899999998888877543
No 31
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=61.96 E-value=24 Score=33.28 Aligned_cols=53 Identities=23% Similarity=0.260 Sum_probs=36.1
Q ss_pred CCCCeEEEEEEEEcCCCCeEEEEEeeCCCccee----------------------ecCCceeeCCCCeEEEEEEee
Q 028668 31 PAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCF----------------------MRPPGAILAPGESLIATVFKF 84 (205)
Q Consensus 31 e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~----------------------VRP~~GiI~Pges~~I~Vtl~ 84 (205)
.+++..+-+++++|.++++|-..==+|+.-+|. |.| .+-|.|||+.+++|..+
T Consensus 260 vpgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~-~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 260 VPGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSD-NSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp SSSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-TT-EEEEEEEEE
T ss_pred cCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCC-CCCcCCCceEEEEEEee
Confidence 378999999999999999998874455444442 223 34689999999999984
No 32
>PF04425 Bul1_N: Bul1 N terminus; InterPro: IPR007519 This domain is the N terminus of Saccharomyces cerevisiae (Baker's yeast) Bul1. Bul1 binds the ubiquitin ligase Rsp5, via an N-terminal PPSY motif (157-160 in P48524 from SWISSPROT) []. The complex containing Bul1 and Rsp5 is involved in intracellular trafficking of the general amino acid permease Gap1 [], degradation of Rog1 in cooperation with Bul2 and GSK-3 [], and mitochondrial inheritance []. Bul1 may contain HEAT repeats. The C terminus is IPR007520 from INTERPRO.
Probab=60.68 E-value=9.7 Score=36.54 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=65.2
Q ss_pred CCCCccccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEE-----------EeeC------CC-----------------
Q 028668 14 YPNGAVSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFK-----------FQTT------AP----------------- 59 (205)
Q Consensus 14 ~~~~~~~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFK-----------VKTT------aP----------------- 59 (205)
+|.-.+|..|.|.-..|.-|+-+.+.++|+|+|+.+|-|= |..+ .|
T Consensus 144 v~~~g~p~~id~~l~Ey~qGD~I~GyvtI~N~S~~pIpFdMFyV~lEG~~~v~~~~~~~~~~~~~~kkFL~M~D~sASws 223 (438)
T PF04425_consen 144 VGKPGKPPEIDPSLKEYTQGDIIHGYVTIENTSSKPIPFDMFYVSLEGTISVVDSKSPSSKKPRTVKKFLRMFDFSASWS 223 (438)
T ss_pred CCCCCCCcccCcccccccCCCEEEEEEEEEECCCCCcccceEEEEEEEEEEEcccccccccccHHHHHHHHhhcceeccc
Confidence 4555559999999999999999999999999999998763 2222 11
Q ss_pred ---------------------cceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEEEEeCCC
Q 028668 60 ---------------------KSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKAD 113 (205)
Q Consensus 60 ---------------------k~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kDKFLIqs~~v~~~ 113 (205)
+.|.==|+..+|.||-+..--+++.+ |.+ -++..|+|. +..++.+++.
T Consensus 224 ~~~i~~~~~~~~~~~~~Dp~Dgt~lgl~~~r~l~p~~~Yk~fF~Fki--P~~---LLd~~C~h~-~~~H~~lPPs 292 (438)
T PF04425_consen 224 YANIDRLVGDNYCPGEVDPYDGTYLGLPNKRILEPGVKYKKFFTFKI--PEQ---LLDSACKHN-LSSHCLLPPS 292 (438)
T ss_pred ccccccccccccCCccccCCCCeeEeCCCCceecCCCeEeceeEEeC--Cch---hccccccCc-ccccCcCCCC
Confidence 11233367778899988887777653 432 245667765 4466666553
No 33
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=60.59 E-value=92 Score=27.35 Aligned_cols=81 Identities=12% Similarity=0.184 Sum_probs=56.1
Q ss_pred eeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEee----CC---CcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCC
Q 028668 23 ILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQT----TA---PKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 95 (205)
Q Consensus 23 i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKT----Ta---Pk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~ 95 (205)
+.--++-|..+ ....+++|.|.++.+ |=|++ .. ..-|.|-|+.--|+|++...+.|... . ...|.
T Consensus 32 l~~TRvIy~~~-~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~---~--~~LP~ 103 (237)
T PRK15224 32 LGATRVIYHAG-TAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRT---G--GDMPT 103 (237)
T ss_pred eCceEEEEeCC-CcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEEC---C--CCCCC
Confidence 34467777764 466789999998775 66765 11 12399999999999999999999982 1 12244
Q ss_pred CCCCCceEEEEEEEeCCC
Q 028668 96 YQKSRDKFKIISMKVKAD 113 (205)
Q Consensus 96 ~~~~kDKFLIqs~~v~~~ 113 (205)
|.. --|-+....+++.
T Consensus 104 DRE--SlFwlnv~~IPp~ 119 (237)
T PRK15224 104 DRE--TLQWVCIKAVPPE 119 (237)
T ss_pred cee--EEEEEEEEEcCCC
Confidence 332 3677777777763
No 34
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=60.33 E-value=1.2e+02 Score=26.46 Aligned_cols=106 Identities=16% Similarity=0.260 Sum_probs=66.0
Q ss_pred ceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEee---CCC---------cceeecCCceeeCCCCeEEEEEEeeccCCC
Q 028668 22 LILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQT---TAP---------KSCFMRPPGAILAPGESLIATVFKFVELPE 89 (205)
Q Consensus 22 ~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKT---TaP---------k~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~ 89 (205)
.+.--++-|+. .....+++|.|.++.+ |=|++ +.. .-|.|-|+.--|+||+...+.|... .
T Consensus 21 ~l~~TRvIy~~-~~~~~si~i~N~~~~p--yLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~---~- 93 (226)
T PRK15218 21 YIYGTRIIYPA-QKKDITVQLMNDGKRS--SLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKL---A- 93 (226)
T ss_pred EeCceEEEEcC-CCcEEEEEEEcCCCCc--EEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEEC---C-
Confidence 34446677765 4556789999999875 55554 211 1499999999999999999999972 2
Q ss_pred CCCCCCCCCCCceEEEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCC
Q 028668 90 NNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNP 141 (205)
Q Consensus 90 ~~e~p~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~-~~i~e~KLrV~f~~p 141 (205)
...|.|. .--|-+....+++..+.. +.... +.....++|+-|-+.
T Consensus 94 -~~LP~DR--ESlfwlnv~~IPp~~~~~----~~~n~L~iairtrIKLfYRP~ 139 (226)
T PRK15218 94 -NNLPGDR--ESLFYLNVLDIPPNSDEN----KDKNIIKFALQNRIKLIYRPP 139 (226)
T ss_pred -CCCCcce--eEEEEEEEEEcCCCCCCc----CcCcEEEEEeeeEEEEEEccc
Confidence 1224332 236777777777643211 01111 223366777777654
No 35
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=60.06 E-value=1.2e+02 Score=26.40 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=56.1
Q ss_pred cceeCeeeecCCCCeEEEEEEEEcCCCC-eEEEEEee---CC----CcceeecCCceeeCCCCeEEEEEEeeccCCCCCC
Q 028668 21 SLILPISSTFPAGKQVRSAIKIKNTSKS-HVAFKFQT---TA----PKSCFMRPPGAILAPGESLIATVFKFVELPENNE 92 (205)
Q Consensus 21 ~~i~pL~F~~e~~k~~s~~LtLtN~S~~-~VAFKVKT---Ta----Pk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e 92 (205)
..+.+.++-|..++.. .+++|+|.+++ +.. |++ +. ..-|.|-|+.--|+||+...|.|... +. .
T Consensus 27 i~i~~TRvIy~~~~~~-~si~l~N~~~~~~~L--vQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~-~~----~ 98 (229)
T PRK15195 27 IALGATRVIYPADAKQ-TSLAIRNSHTNERYL--VNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYA-GP----P 98 (229)
T ss_pred EEECCeEEEEeCCCce-EEEEEEeCCCCccEE--EEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEEC-CC----C
Confidence 4567888889877665 89999999864 333 443 11 12599999999999999999999972 11 1
Q ss_pred CCCCCCCCceEEEEEEEeCC
Q 028668 93 KPMYQKSRDKFKIISMKVKA 112 (205)
Q Consensus 93 ~p~~~~~kDKFLIqs~~v~~ 112 (205)
.|.+. ..-|.+....+++
T Consensus 99 LP~Dr--ESlf~Lnv~eIP~ 116 (229)
T PRK15195 99 LAADR--ESLFWMNVKAIPS 116 (229)
T ss_pred CCCCe--eEEEEEEeeecCC
Confidence 13322 2356666666665
No 36
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=55.65 E-value=14 Score=25.36 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=27.2
Q ss_pred EEEEcCCCCeEEEEE-eeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028668 40 IKIKNTSKSHVAFKF-QTTAPKSCFMRPPGAILAPGESLIATVFK 83 (205)
Q Consensus 40 LtLtN~S~~~VAFKV-KTTaPk~Y~VRP~~GiI~Pges~~I~Vtl 83 (205)
|+++|+|.-+|.|-= +....+.=.--...++|.|.++..+.+.-
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~~ 45 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLPA 45 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETST
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEeccC
Confidence 789999999999864 34433332223444499999998877654
No 37
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=53.72 E-value=1.6e+02 Score=25.95 Aligned_cols=106 Identities=14% Similarity=0.257 Sum_probs=65.3
Q ss_pred ceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEee---CC-----C----cceeecCCceeeCCCCeEEEEEEeeccCCC
Q 028668 22 LILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQT---TA-----P----KSCFMRPPGAILAPGESLIATVFKFVELPE 89 (205)
Q Consensus 22 ~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKT---Ta-----P----k~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~ 89 (205)
.+.--++-|..+ ....+++|.|.++.+ |=|++ .. | .-|.|-|+.--|+|++...|.|.. ...
T Consensus 36 ~l~~TRvIy~~~-~k~~sv~i~N~~~~p--yLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~---~~~ 109 (242)
T PRK15253 36 VIYGTRVIYPAE-KKEVVVQLVNQGEQA--SLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKK---MPN 109 (242)
T ss_pred EeCceEEEEeCC-CceEEEEEEcCCCCc--EEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEE---CCC
Confidence 344466777764 466789999999875 55554 11 1 149999999999999999999987 221
Q ss_pred CCCCCCCCCCCceEEEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCC
Q 028668 90 NNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNP 141 (205)
Q Consensus 90 ~~e~p~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~-~~i~e~KLrV~f~~p 141 (205)
..|.|. .--|-+....+++..+.. +.... ......++|+-|-+.
T Consensus 110 --~LP~DR--ESlfwlnv~~IPp~~~~~----~~~n~l~iairtriKLFYRP~ 154 (242)
T PRK15253 110 --SLPDNK--ESLFYLNVLDIPPNSQEN----AGKNVLKFAMQNRIKLIWRPS 154 (242)
T ss_pred --CCCcce--eEEEEEEEEEcCCCCCCc----CcCcEEEEEeeeEEEEEEcch
Confidence 123332 236777777777642210 01111 222356667666554
No 38
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=52.24 E-value=1.6e+02 Score=25.48 Aligned_cols=86 Identities=14% Similarity=0.227 Sum_probs=57.1
Q ss_pred ccceeCeeeecCCCCeEEEEEEEEcCCCC-eEE-EEEeeCCC----cceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 028668 20 SSLILPISSTFPAGKQVRSAIKIKNTSKS-HVA-FKFQTTAP----KSCFMRPPGAILAPGESLIATVFKFVELPENNEK 93 (205)
Q Consensus 20 ~~~i~pL~F~~e~~k~~s~~LtLtN~S~~-~VA-FKVKTTaP----k~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~ 93 (205)
...+.+.++-|..++ ...+++|+|.+++ ++. +..-.+.. .-|.|-|+.--|+||+...|.|... .. ..
T Consensus 22 gv~l~~TRvI~~~~~-~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~---~~--~l 95 (228)
T PRK15208 22 GVALSSTRVIYDGSK-KEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNI---TN--TL 95 (228)
T ss_pred cEEeCceEEEEeCCC-ceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEEC---CC--CC
Confidence 366778888888854 5789999999864 333 33221211 1299999999999999999999872 11 12
Q ss_pred CCCCCCCceEEEEEEEeCCC
Q 028668 94 PMYQKSRDKFKIISMKVKAD 113 (205)
Q Consensus 94 p~~~~~kDKFLIqs~~v~~~ 113 (205)
|.+. .--|.+....+++.
T Consensus 96 P~Dr--ESlf~lnv~eIP~~ 113 (228)
T PRK15208 96 PQDR--ESVYWINVKAIPAK 113 (228)
T ss_pred CCCe--eEEEEEEEEEcCCC
Confidence 3322 23577777777653
No 39
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=51.38 E-value=1.7e+02 Score=25.99 Aligned_cols=83 Identities=14% Similarity=0.156 Sum_probs=54.0
Q ss_pred eeCeeeecCCCCeEEEEEEEEcCCCC-eEEEEEee---CC-----CcceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 028668 23 ILPISSTFPAGKQVRSAIKIKNTSKS-HVAFKFQT---TA-----PKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 93 (205)
Q Consensus 23 i~pL~F~~e~~k~~s~~LtLtN~S~~-~VAFKVKT---Ta-----Pk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~ 93 (205)
+.--++-|.. .....+|+|+|.++. + |=|++ .. ..-|.|-|+.--|+||+...|.|.. .......
T Consensus 30 l~~TRvIy~e-~~~~~sv~v~N~~~~~p--~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~---~~~~~~L 103 (257)
T PRK15274 30 PDRTRVIFNG-NENSITVTLKNGNATLP--YLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQP---LPAAASL 103 (257)
T ss_pred eCceEEEEeC-CCceEEEEEEeCCCCCc--EEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEE---CCCCCCC
Confidence 3445666665 444778999999865 4 33443 11 1149999999999999999999997 2211123
Q ss_pred CCCCCCCceEEEEEEEeCCC
Q 028668 94 PMYQKSRDKFKIISMKVKAD 113 (205)
Q Consensus 94 p~~~~~kDKFLIqs~~v~~~ 113 (205)
|.|.. --|-+....+++.
T Consensus 104 P~DRE--SlFwlNv~eIPp~ 121 (257)
T PRK15274 104 PQDRE--SLFYFNVREIPPK 121 (257)
T ss_pred CCcee--EEEEEEEEEcCCC
Confidence 43332 3677777777763
No 40
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=50.89 E-value=24 Score=24.06 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=18.0
Q ss_pred eeecCCCCeEEEEEEEEcCCCCeEEEEE
Q 028668 27 SSTFPAGKQVRSAIKIKNTSKSHVAFKF 54 (205)
Q Consensus 27 ~F~~e~~k~~s~~LtLtN~S~~~VAFKV 54 (205)
...|.++. +...-++...+...||||+
T Consensus 45 C~~y~~~~-i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 45 CYLYNYGS-ISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred EEEEEcCC-EEEEEEeecCCCeEEEEEC
Confidence 34455555 5555566666779999996
No 41
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=46.94 E-value=2.1e+02 Score=25.35 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=52.1
Q ss_pred eeCeeeecCCCCeEEEEEEEEcCCCC-eEEEEEee----CCCc----ceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 028668 23 ILPISSTFPAGKQVRSAIKIKNTSKS-HVAFKFQT----TAPK----SCFMRPPGAILAPGESLIATVFKFVELPENNEK 93 (205)
Q Consensus 23 i~pL~F~~e~~k~~s~~LtLtN~S~~-~VAFKVKT----TaPk----~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~ 93 (205)
+.--++-|+. .....+++|+|.++. + |=|++ ...+ -|.|-|+.--|+||+...+.|.. .......
T Consensus 29 l~~TRVIy~~-~~~~~sv~i~N~~~~~p--~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~---~~~~~~L 102 (250)
T PRK15285 29 PDRTRLVFRG-EDKSISVDLKNANSKLP--YLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQG---MPALASL 102 (250)
T ss_pred eCccEEEEcC-CCceEEEEEEeCCCCCc--EEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEE---CCCCCCC
Confidence 3345666664 455678999999864 4 33333 1111 39999999999999999999997 2211112
Q ss_pred CCCCCCCceEEEEEEEeCC
Q 028668 94 PMYQKSRDKFKIISMKVKA 112 (205)
Q Consensus 94 p~~~~~kDKFLIqs~~v~~ 112 (205)
|.|. .--|-+....+++
T Consensus 103 P~DR--ESlfwlnv~~IPp 119 (250)
T PRK15285 103 PQDR--ETLFYYNVREIPP 119 (250)
T ss_pred CCCc--eEEEEEEEEEcCC
Confidence 3332 2356666666766
No 42
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=45.71 E-value=2.1e+02 Score=25.14 Aligned_cols=110 Identities=9% Similarity=0.106 Sum_probs=67.9
Q ss_pred cceeCeeeecCCCCeEEEEEEEEcCCC-CeEEEEEeeC--C-C-c---ceeecCCceeeCCCCeEEEEEEeeccCCCCCC
Q 028668 21 SLILPISSTFPAGKQVRSAIKIKNTSK-SHVAFKFQTT--A-P-K---SCFMRPPGAILAPGESLIATVFKFVELPENNE 92 (205)
Q Consensus 21 ~~i~pL~F~~e~~k~~s~~LtLtN~S~-~~VAFKVKTT--a-P-k---~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e 92 (205)
..+...++-|+. +....+++|+|.++ .++.--.-.. + . + -|.|-|+.--|+||+...+.|.. ... ..
T Consensus 39 v~l~~TRvIy~~-~~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~---~~~-~~ 113 (243)
T PRK15290 39 VVIGGTRVVYLS-NNPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIH---TKG-VS 113 (243)
T ss_pred EEECceEEEEeC-CCceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEE---cCC-CC
Confidence 456677888876 45567999999985 4555444333 1 1 1 39999999999999999999997 221 11
Q ss_pred CCCCCCCCceEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCC
Q 028668 93 KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNP 141 (205)
Q Consensus 93 ~p~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~~~i~e~KLrV~f~~p 141 (205)
.|.+. ..-|.+....+++..+. .+ ++ .=+.....++++-|-+.
T Consensus 114 LP~DR--ESlf~lnv~eIPp~~~~-~~--~n-~L~iair~rIKlFyRP~ 156 (243)
T PRK15290 114 LPDDR--ESVFWLNIKNIPPSASN-KA--TN-SLEIAVKTRIKLFWRPA 156 (243)
T ss_pred CCCCe--eEEEEEEEEEcCCCCcc-cc--cc-eEEEEEEEeeeEEEecc
Confidence 23332 34677777777763221 00 11 11223466777777654
No 43
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=45.19 E-value=43 Score=25.02 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=31.1
Q ss_pred EEEEEEEEcCCCCeE-----EEEEe-------------eCCCcceeecCCc--eeeCCCCeEEEEEEe
Q 028668 36 VRSAIKIKNTSKSHV-----AFKFQ-------------TTAPKSCFMRPPG--AILAPGESLIATVFK 83 (205)
Q Consensus 36 ~s~~LtLtN~S~~~V-----AFKVK-------------TTaPk~Y~VRP~~--GiI~Pges~~I~Vtl 83 (205)
-...|+|+|.++..+ .|.+. +..-..|.|+|.. +.|+||+++.+-+..
T Consensus 15 f~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~ 82 (101)
T PF00553_consen 15 FQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQA 82 (101)
T ss_dssp EEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEE
T ss_pred eEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEE
Confidence 345788888876654 23322 1112568888654 699999998877665
No 44
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=44.92 E-value=1e+02 Score=22.73 Aligned_cols=49 Identities=24% Similarity=0.364 Sum_probs=29.9
Q ss_pred CeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028668 25 PISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 83 (205)
Q Consensus 25 pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl 83 (205)
|-.+....|++++ |+++|.++..-.|-+.. +.+ ...|.||++..++++-
T Consensus 34 P~~i~v~~G~~v~--l~~~N~~~~~h~~~i~~-----~~~---~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 34 PSTITVKAGQPVT--LTFTNNDSRPHEFVIPD-----LGI---SKVLPPGETATVTFTP 82 (104)
T ss_dssp S-EEEEETTCEEE--EEEEE-SSS-EEEEEGG-----GTE---EEEE-TT-EEEEEEEE
T ss_pred cCEEEEcCCCeEE--EEEEECCCCcEEEEECC-----Cce---EEEECCCCEEEEEEcC
Confidence 4444455555554 88999988877777755 111 1689999999999864
No 45
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=44.67 E-value=16 Score=23.78 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=12.1
Q ss_pred hhhHhHHHHHHHhhh
Q 028668 185 EWKERRERYLARQQV 199 (205)
Q Consensus 185 ~~~~~~~~~~~~~~~ 199 (205)
+=.|||+++|.+|-.
T Consensus 15 ~Q~eRR~~~Le~QK~ 29 (40)
T PF11538_consen 15 DQEERRREFLERQKN 29 (40)
T ss_dssp SHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHH
Confidence 457999999998853
No 46
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=44.33 E-value=1.2e+02 Score=25.56 Aligned_cols=51 Identities=22% Similarity=0.325 Sum_probs=36.5
Q ss_pred CCCeEEEEEEEEcCCCCeEEEEEeeCC----CcceeecC-----CceeeCCCCeEEEEEEe
Q 028668 32 AGKQVRSAIKIKNTSKSHVAFKFQTTA----PKSCFMRP-----PGAILAPGESLIATVFK 83 (205)
Q Consensus 32 ~~k~~s~~LtLtN~S~~~VAFKVKTTa----Pk~Y~VRP-----~~GiI~Pges~~I~Vtl 83 (205)
.++..+..++|+|..+. -||.|+=+. ++.|-+.- ....|+||+++.-++++
T Consensus 36 ~g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv 95 (181)
T PF05753_consen 36 EGEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVV 95 (181)
T ss_pred CCcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEE
Confidence 57899999999999766 799999876 23444321 13567777777776666
No 47
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=44.09 E-value=63 Score=27.61 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=15.9
Q ss_pred CCceeeCCCCeEEEEEEee
Q 028668 66 PPGAILAPGESLIATVFKF 84 (205)
Q Consensus 66 P~~GiI~Pges~~I~Vtl~ 84 (205)
|....|+||+++++++...
T Consensus 123 p~wqslapG~s~~~~~~Yy 141 (180)
T PF06483_consen 123 PAWQSLAPGASVELDMVYY 141 (180)
T ss_pred CCccccCCCCEEEEeEEEE
Confidence 7778899999999888875
No 48
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=42.32 E-value=81 Score=22.11 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=34.7
Q ss_pred CCCCeEEEEEEEEcCCCC-eEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028668 31 PAGKQVRSAIKIKNTSKS-HVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 83 (205)
Q Consensus 31 e~~k~~s~~LtLtN~S~~-~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl 83 (205)
..++..+-.++|+|.... .=.|+|+-...+.-.-.-..+-|.||++..+.+++
T Consensus 16 ~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~ 69 (101)
T PF07705_consen 16 VPGEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTW 69 (101)
T ss_dssp ETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEE
T ss_pred cCCCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEE
Confidence 468899999999999754 34566653322222222233788999999999998
No 49
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=41.95 E-value=2.4e+02 Score=24.62 Aligned_cols=108 Identities=15% Similarity=0.216 Sum_probs=66.4
Q ss_pred cceeCeeeecCCCCeEEEEEEEEcCCCC-eEEEEEee---C-CC---cceeecCCceeeCCCCeEEEEEEeeccCCCCCC
Q 028668 21 SLILPISSTFPAGKQVRSAIKIKNTSKS-HVAFKFQT---T-AP---KSCFMRPPGAILAPGESLIATVFKFVELPENNE 92 (205)
Q Consensus 21 ~~i~pL~F~~e~~k~~s~~LtLtN~S~~-~VAFKVKT---T-aP---k~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e 92 (205)
..+.+.++-|..+ ....+++|+|.+++ +.. |++ + .. .-|.|-|+.--|+||+...+.|... . ..
T Consensus 29 i~l~~TRvIy~~~-~~~~sv~i~N~~~~~p~L--vQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~---~--~~ 100 (228)
T PRK15188 29 IALGATRVIYPQG-SKQTSLPIINSSASNVFL--IQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYV---G--PS 100 (228)
T ss_pred EEECcEEEEEcCC-CceEEEEEEeCCCCccEE--EEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEEC---C--CC
Confidence 4466778888874 55789999999864 333 332 1 11 2499999999999999999999972 1 11
Q ss_pred CCCCCCCCceEEEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCCC
Q 028668 93 KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPE 142 (205)
Q Consensus 93 ~p~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~-~~i~e~KLrV~f~~p~ 142 (205)
.|.+. ..-|.+....+++..+.. .+... ......++++-|-+..
T Consensus 101 lP~DR--ESlf~lnv~~IP~~~~~~----~~~n~l~ia~r~~IKLFyRP~~ 145 (228)
T PRK15188 101 LPTDR--ESVFYLNSKAIPSVDKNK----LTGNSLQIATQSVIKLFIRPKN 145 (228)
T ss_pred CCCCc--eEEEEEEEEecCCCCccc----cccceEEEEEeeeEEEEECCcc
Confidence 23332 346777777777642210 01111 2233667777676543
No 50
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=41.93 E-value=2.3e+02 Score=24.54 Aligned_cols=115 Identities=12% Similarity=0.187 Sum_probs=76.7
Q ss_pred ccccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeC-------CCcceeecCCceeeCCCCeEEEEEEeeccCCCC
Q 028668 18 AVSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTT-------APKSCFMRPPGAILAPGESLIATVFKFVELPEN 90 (205)
Q Consensus 18 ~~~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTT-------aPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~ 90 (205)
+-.+.|.+.++.|+.++. ...++|.|.++.++.-.+-.- ...-|.|-|+.-.|+||+...|.|.+ .+.
T Consensus 26 ~A~v~i~~TRiI~~~~~k-~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~---~~~- 100 (235)
T COG3121 26 AAGVVLGGTRIIYPAGDK-ETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILY---TGN- 100 (235)
T ss_pred eeeEEecceEEEEeCCCc-eeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEe---cCC-
Confidence 345667777888876654 467999998889988885543 23459999999999999999999998 232
Q ss_pred CCCCCCCCCCceEEEEEEEeCCCCC-ChhhhhhccCCCcceEEEeEEEEeCCCCC
Q 028668 91 NEKPMYQKSRDKFKIISMKVKADVD-YVPELFDEQKDQTAAEQILRVVFLNPERP 144 (205)
Q Consensus 91 ~e~p~~~~~kDKFLIqs~~v~~~~d-~~~elfk~~~~~~i~e~KLrV~f~~p~~p 144 (205)
. .|.+. ..-|.+....++.... .... +. -+....+++++-|-++.-+
T Consensus 101 ~-lP~dr--Eslf~lnv~eIPp~~~~~~~~---n~-lq~a~r~riKlf~RP~~l~ 148 (235)
T COG3121 101 K-LPADR--ESLFRLNVDEIPPKSKDDKGP---NV-LQLALRSRIKLFYRPAGLA 148 (235)
T ss_pred C-CCCCc--eeEEEEEeeecCCCCcccCCc---ce-EEEEeeeeeeEEECcccCC
Confidence 1 23333 3578888888876532 1010 00 0233477888877776443
No 51
>smart00637 CBD_II CBD_II domain.
Probab=41.09 E-value=1.1e+02 Score=22.16 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=17.6
Q ss_pred cceeecCCc--eeeCCCCeEEEEEEe
Q 028668 60 KSCFMRPPG--AILAPGESLIATVFK 83 (205)
Q Consensus 60 k~Y~VRP~~--GiI~Pges~~I~Vtl 83 (205)
..|.++|.. +.|.||+++.+-+..
T Consensus 50 ~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 50 GHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred CEEEEecCccccccCCCCEEEEEEEe
Confidence 368888644 799999988765554
No 52
>smart00605 CW CW domain.
Probab=36.51 E-value=60 Score=23.73 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=13.4
Q ss_pred EEEEcC-CCCeEEEEEeeCCCc
Q 028668 40 IKIKNT-SKSHVAFKFQTTAPK 60 (205)
Q Consensus 40 LtLtN~-S~~~VAFKVKTTaPk 60 (205)
++-.+. +...||||+.++.+.
T Consensus 59 v~~~~~~~~~~VAfK~~~~~~~ 80 (94)
T smart00605 59 VKKLSSSSGKKVAFKVSTDQPS 80 (94)
T ss_pred EEEccCCCCcEEEEEEeCCCCC
Confidence 333333 458899999866443
No 53
>PHA01327 hypothetical protein
Probab=36.11 E-value=29 Score=23.11 Aligned_cols=13 Identities=46% Similarity=1.086 Sum_probs=10.9
Q ss_pred chhhHhHHHHHHH
Q 028668 184 DEWKERRERYLAR 196 (205)
Q Consensus 184 ~~~~~~~~~~~~~ 196 (205)
+||.|||.+.-.|
T Consensus 20 e~wqer~drmkkr 32 (49)
T PHA01327 20 EEWQERKDRMKKR 32 (49)
T ss_pred HHHHHHHHHHHHH
Confidence 5899999988765
No 54
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=34.13 E-value=15 Score=22.50 Aligned_cols=10 Identities=40% Similarity=0.790 Sum_probs=5.2
Q ss_pred eechhhHhHH
Q 028668 182 VIDEWKERRE 191 (205)
Q Consensus 182 ~~~~~~~~~~ 191 (205)
.=+|||.||-
T Consensus 18 LN~eWk~lRi 27 (30)
T PF11616_consen 18 LNEEWKKLRI 27 (30)
T ss_dssp HHHHHHH---
T ss_pred HHHHHHHhcc
Confidence 3478999983
No 55
>PF11668 Gp_UL130: HCMV glycoprotein pUL130; InterPro: IPR021038 This entry represents UL130 from Human cytomegalovirus, a glycoprotein secreted from infected cells that is incorporated into the virion envelope as a Golgi-matured form. The protein promotes endothelial cell infection through a producer cell modification of the virion [].
Probab=33.49 E-value=1.1e+02 Score=25.55 Aligned_cols=51 Identities=10% Similarity=0.210 Sum_probs=38.2
Q ss_pred ccccceeCeeeecCCCCe-EEEEEEEEcC---CCCeEEEEEee------CCCcceeecCCc
Q 028668 18 AVSSLILPISSTFPAGKQ-VRSAIKIKNT---SKSHVAFKFQT------TAPKSCFMRPPG 68 (205)
Q Consensus 18 ~~~~~i~pL~F~~e~~k~-~s~~LtLtN~---S~~~VAFKVKT------TaPk~Y~VRP~~ 68 (205)
-||-.+..|.|...-|-. ..|.++|.-- ....|+|++|- ..+..+|++||.
T Consensus 94 mipk~~~~Lry~vkDG~~~~~C~m~v~TwA~~~~~~i~Fq~kiel~~A~~~~stiCthPnl 154 (156)
T PF11668_consen 94 MIPKQIKLLRYRVKDGTRWEMCIMRVQTWAHTKSNYIQFQVKIELTHAYRQPSTICTHPNL 154 (156)
T ss_pred cccccceeEEEEeccCCceeeEEEEeeehhhhhcccEEEEEEEEEeeccCCccceeccccc
Confidence 477888899999987764 5588888754 24569999982 346678888874
No 56
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=32.09 E-value=3.5e+02 Score=23.70 Aligned_cols=108 Identities=15% Similarity=0.120 Sum_probs=65.6
Q ss_pred cceeCeeeecCCCCeEEEEEEEEcCCCC-eEEEEEee-CC---C-cceeecCCceeeCCCCeEEEEEEeeccCCC-CCCC
Q 028668 21 SLILPISSTFPAGKQVRSAIKIKNTSKS-HVAFKFQT-TA---P-KSCFMRPPGAILAPGESLIATVFKFVELPE-NNEK 93 (205)
Q Consensus 21 ~~i~pL~F~~e~~k~~s~~LtLtN~S~~-~VAFKVKT-Ta---P-k~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~-~~e~ 93 (205)
+.+...++-|..+ ....+++|.|.++. ++.=..-. .. + .-|.|-|+.--|+||+...|.|.. ... ....
T Consensus 18 v~l~~TRvIy~~~-~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~---~~~~~~~l 93 (239)
T PRK15254 18 VNVDRTRIIMDAP-QKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQ---VRGLTDKL 93 (239)
T ss_pred EEECceEEEEeCC-CceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEE---cccCCCCC
Confidence 4566777878764 46778999999753 54333221 11 1 249999999999999999999987 211 1122
Q ss_pred CCCCCCCceEEEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCC
Q 028668 94 PMYQKSRDKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNP 141 (205)
Q Consensus 94 p~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~-~~i~e~KLrV~f~~p 141 (205)
|.+. ..-|.+....+++..+. ... ......+|++-|-+.
T Consensus 94 P~DR--ESlf~lnv~~IP~~~~~-------~n~L~iair~~iKLFyRP~ 133 (239)
T PRK15254 94 PQDR--ETLFWFNVRGVPPKPED-------DNVLQLAMQSQLKLFYRPK 133 (239)
T ss_pred CCCc--eEEEEEEEEEcCCCCCC-------CceEEEEEEeEEeEEEccc
Confidence 4333 34677777777763221 111 122356667666554
No 57
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=31.30 E-value=2.2e+02 Score=21.08 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=36.5
Q ss_pred ceeCeeeecCCCCeEEEEEEEEcCCCCe--EEEEEeeCCCcceeecCC-----ceeeCCCCeEEEEEEe
Q 028668 22 LILPISSTFPAGKQVRSAIKIKNTSKSH--VAFKFQTTAPKSCFMRPP-----GAILAPGESLIATVFK 83 (205)
Q Consensus 22 ~i~pL~F~~e~~k~~s~~LtLtN~S~~~--VAFKVKTTaPk~Y~VRP~-----~GiI~Pges~~I~Vtl 83 (205)
.+..+..... +......+.|+|.++.+ +.||+-==..+-+-|.|. .=+|.++++..|.-+-
T Consensus 13 ~v~~~~~~~~-~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~~~a 80 (94)
T PF07233_consen 13 SVENPSTSRV-NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLSAVA 80 (94)
T ss_dssp EEEEEEEEEC-CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEEEE-
T ss_pred EEeccEEEee-CCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEEEEC
Confidence 3444455555 88889999999999765 888887556666677766 3367777777666554
No 58
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=30.74 E-value=4.7e+02 Score=25.06 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=36.8
Q ss_pred eEEEEEEEEcCCCCeEEEEEeeCCCcceeec-C-CceeeCCCCeEEEEEEee
Q 028668 35 QVRSAIKIKNTSKSHVAFKFQTTAPKSCFMR-P-PGAILAPGESLIATVFKF 84 (205)
Q Consensus 35 ~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VR-P-~~GiI~Pges~~I~Vtl~ 84 (205)
.-.-+++|.|.+.++..|.++........+. + +.=.|+||+..++.|++.
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~ 398 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLR 398 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEE
Confidence 4458999999999988888886654443333 2 344899999998888873
No 59
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=29.96 E-value=1.2e+02 Score=26.69 Aligned_cols=43 Identities=16% Similarity=0.097 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCeEEEE-EeeCCCcceeecCCceeeCCCCeEEEEE
Q 028668 38 SAIKIKNTSKSHVAFK-FQTTAPKSCFMRPPGAILAPGESLIATV 81 (205)
Q Consensus 38 ~~LtLtN~S~~~VAFK-VKTTaPk~Y~VRP~~GiI~Pges~~I~V 81 (205)
..|+++|+|..++.|- ++....+. .+....|+|.|+++..+.+
T Consensus 176 ~~l~v~Nptpyyitl~~l~~~~~~~-~~~~~~~mv~P~s~~~~~l 219 (253)
T PRK15249 176 SGIVIVNPQPWFASLSNLNVKVNGA-SYNLDADMIAPFSSQTWWL 219 (253)
T ss_pred CEEEEECCCceEEEeeeeeeccCCe-ecCCCCceECCCCccEEEc
Confidence 3599999999988876 33211221 1222457899999988764
No 60
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=27.47 E-value=2.2e+02 Score=19.91 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=21.9
Q ss_pred EEEEEcCCCCeEE-----EEEeeCCCcce-eecCCceeeCCCCeEEEEEEe
Q 028668 39 AIKIKNTSKSHVA-----FKFQTTAPKSC-FMRPPGAILAPGESLIATVFK 83 (205)
Q Consensus 39 ~LtLtN~S~~~VA-----FKVKTTaPk~Y-~VRP~~GiI~Pges~~I~Vtl 83 (205)
+|+++|++...+- +.|.-..-.-- ......+.+.|+++..+.+.+
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v 51 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPV 51 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEE
Confidence 4788899773333 23332222222 344555556666665555544
No 61
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=21.76 E-value=1.1e+02 Score=23.68 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=20.3
Q ss_pred EEEEEEEEcCCCCeEEEEEeeCCCcc
Q 028668 36 VRSAIKIKNTSKSHVAFKFQTTAPKS 61 (205)
Q Consensus 36 ~s~~LtLtN~S~~~VAFKVKTTaPk~ 61 (205)
..-+|++.+-..+-+-||||.++|-+
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~Lk 44 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLK 44 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHH
Confidence 45678888866788899999988854
No 62
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=20.98 E-value=1.2e+02 Score=25.45 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=46.6
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEEEEeCCCC
Q 028668 37 RSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKADV 114 (205)
Q Consensus 37 s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kDKFLIqs~~v~~~~ 114 (205)
+-..-|.|-|+-.+.|-..|...+.|.+| +.|.|+|+..+-|.-.-. .. ...-.+.-||.+.-..+.
T Consensus 19 ~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~~---~e-------LN~~~~v~vQ~iAyK~~K 85 (162)
T PF09640_consen 19 RFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFSK---EE-------LNDLERVAVQLIAYKKDK 85 (162)
T ss_dssp -EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE-G---GG-------GGG-SSEEEEEEEE-SSS
T ss_pred ceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcCH---HH-------hhccceeEEEEEEEcCCC
Confidence 35667899999999999999888889988 789999999988875541 11 123456778887766553
No 63
>PF12086 DUF3563: Protein of unknown function (DUF3563); InterPro: IPR021946 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 50 amino acids in length. This protein has conserved AYL and DLE sequence motifs.
Probab=20.91 E-value=60 Score=22.91 Aligned_cols=11 Identities=64% Similarity=0.912 Sum_probs=9.3
Q ss_pred hhHhHHHHHHH
Q 028668 186 WKERRERYLAR 196 (205)
Q Consensus 186 ~~~~~~~~~~~ 196 (205)
-++|||-|||.
T Consensus 19 ~~~r~eaYLA~ 29 (59)
T PF12086_consen 19 ERERREAYLAQ 29 (59)
T ss_pred HHHHHHHHHHh
Confidence 37899999996
No 64
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.55 E-value=2.1e+02 Score=24.81 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCeEEEE--EeeCCCcceeecCCceeeCCCCeEEEEE
Q 028668 38 SAIKIKNTSKSHVAFK--FQTTAPKSCFMRPPGAILAPGESLIATV 81 (205)
Q Consensus 38 ~~LtLtN~S~~~VAFK--VKTTaPk~Y~VRP~~GiI~Pges~~I~V 81 (205)
..|+++|+|..++.|- .-+. .++-.. -+.+.|.|+++..+.+
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~-~~~~~~-~~~~mv~P~s~~~~~l 208 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV-GGRKLG-LNSGMVAPFSTRQFPL 208 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee-CceecC-CCcceECCCccceeec
Confidence 6899999999999997 3333 333222 6788999999887443
Done!