Query 028668
Match_columns 205
No_of_seqs 154 out of 570
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 01:27:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028668.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028668hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cri_A Vesicle-associated memb 100.0 1.1E-32 3.7E-37 221.7 15.8 119 21-144 15-136 (147)
2 1z9l_A Vesicle-associated memb 100.0 2E-32 6.8E-37 214.8 15.7 110 25-139 18-127 (128)
3 1wic_A Hypothetical protein ri 100.0 6.4E-32 2.2E-36 218.9 12.4 120 21-148 19-146 (152)
4 1msp_A MSP, major sperm protei 100.0 4.1E-28 1.4E-32 190.7 14.4 109 25-139 16-125 (126)
5 1row_A SSP-19, MSP-domain prot 99.9 1.5E-26 5.3E-31 178.4 13.3 102 21-137 3-106 (109)
6 1m1s_A WR4; structural genomic 99.9 8E-26 2.7E-30 176.5 14.9 103 22-137 12-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.2 1.2E-05 4E-10 61.3 10.7 66 19-89 23-91 (122)
8 3qbt_B Inositol polyphosphate 97.7 0.00014 4.8E-09 57.2 7.7 60 25-84 33-99 (140)
9 2e6j_A Hydin protein; PAPD, st 97.6 0.0001 3.5E-09 54.4 6.1 58 26-83 17-78 (112)
10 3qis_A Inositol polyphosphate 97.0 0.0018 6.1E-08 58.1 7.8 61 25-85 36-103 (366)
11 2qsv_A Uncharacterized protein 94.9 0.078 2.7E-06 43.8 7.6 56 26-83 126-183 (220)
12 2qsv_A Uncharacterized protein 94.2 0.14 4.7E-06 42.3 7.5 51 32-83 17-67 (220)
13 1yew_A Particulate methane mon 87.3 4.2 0.00014 37.0 10.2 70 14-84 245-335 (382)
14 3q48_A Chaperone CUPB2; IG fol 86.1 15 0.00051 31.2 13.6 111 19-142 28-148 (257)
15 3rfr_A PMOB; membrane, oxidore 81.4 4.4 0.00015 37.2 7.7 66 16-84 281-367 (419)
16 2co7_B SAFB chaperone, putativ 73.6 21 0.00071 29.5 9.2 87 19-113 12-103 (221)
17 2r39_A FIXG-related protein; s 73.2 11 0.00037 27.9 6.6 49 36-84 33-82 (118)
18 2xg5_A PAPD, chaperone protein 70.8 28 0.00097 28.6 9.4 107 22-141 3-118 (218)
19 4djm_A DRAB; chaperone, PILI; 69.4 30 0.001 29.0 9.4 88 18-113 21-113 (239)
20 3zy7_A AP-1 complex subunit ga 67.2 37 0.0013 25.4 9.3 67 35-109 30-102 (122)
21 3idu_A Uncharacterized protein 55.6 27 0.00093 26.5 6.0 52 31-83 30-82 (127)
22 3e38_A Two-domain protein cont 54.1 19 0.00064 31.8 5.5 65 38-113 270-334 (343)
23 1klf_A FIMC chaperone, chapero 52.9 38 0.0013 27.6 6.9 110 22-142 3-119 (205)
24 4ay0_A Chaperone protein CAF1M 52.9 95 0.0032 25.5 11.6 109 20-141 13-128 (218)
25 3isy_A Bsupi, intracellular pr 48.3 86 0.0029 23.7 8.2 37 16-56 4-40 (120)
26 1l4i_A SFAE protein; periplasm 45.5 1.2E+02 0.0041 24.5 12.0 110 22-143 3-120 (206)
27 3i6s_A Subtilisin-like proteas 40.6 80 0.0027 30.1 7.9 65 18-83 541-610 (649)
28 2xzz_A Protein-glutamine gamma 38.1 98 0.0033 22.4 6.4 48 32-83 18-71 (102)
29 3hn9_A Lamin-B1; structural ge 32.7 58 0.002 24.5 4.6 41 38-79 25-71 (123)
30 2g30_A AP-2 complex subunit be 31.3 1.1E+02 0.0037 25.8 6.5 51 33-84 54-110 (258)
31 3mnm_A ADP-ribosylation factor 30.6 1.7E+02 0.0057 21.8 9.9 73 32-109 29-107 (123)
32 1wm3_A Ubiquitin-like protein 29.9 46 0.0016 22.1 3.2 21 39-59 3-23 (72)
33 1c7s_A Beta-N-acetylhexosamini 28.7 77 0.0026 31.6 5.8 48 36-83 40-109 (858)
34 2huh_A Putative DNA mismatch r 28.0 71 0.0024 25.2 4.4 66 37-113 29-94 (147)
35 1yyc_A LEA protein, putative l 25.5 2.2E+02 0.0074 22.7 7.0 51 34-84 62-118 (174)
36 2io0_B Small ubiquitin-related 24.6 66 0.0023 22.7 3.4 22 38-59 6-27 (91)
37 2x3c_A Toxic extracellular end 24.6 3.5E+02 0.012 23.6 9.0 76 25-108 23-126 (343)
38 2cal_A Rusticyanin; iron respi 23.9 1.2E+02 0.004 23.3 5.0 29 14-45 50-78 (154)
39 3o0l_A Uncharacterized protein 22.7 2.1E+02 0.0073 21.0 6.0 54 30-83 34-94 (112)
40 3vta_A Cucumisin; subtilisin-l 22.5 2.5E+02 0.0085 26.2 7.8 49 35-83 538-589 (621)
41 1ifr_A Lamin A/C; immunoglobul 22.4 1.4E+02 0.0048 22.4 5.0 42 38-79 19-66 (121)
42 1xo8_A AT1G01470; structural g 22.3 1.5E+02 0.005 22.8 5.3 49 35-83 40-94 (151)
43 4gio_A Putative lipoprotein; u 22.2 2E+02 0.0067 21.0 5.7 52 32-83 34-91 (107)
44 3jt0_A Lamin-B1; structural ge 20.7 1.8E+02 0.0061 22.5 5.5 42 38-79 38-84 (144)
45 2l0d_A Cell surface protein; s 20.6 1.4E+02 0.0046 22.2 4.6 53 31-83 16-69 (114)
No 1
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=1.1e-32 Score=221.66 Aligned_cols=119 Identities=26% Similarity=0.440 Sum_probs=107.0
Q ss_pred cceeC---eeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCC
Q 028668 21 SLILP---ISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ 97 (205)
Q Consensus 21 ~~i~p---L~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~ 97 (205)
..|.| |.|.+++++++++.|+|+|+++++||||||||+|++|+|||+.|+|.||++++|.|+| ++.... +++
T Consensus 15 L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l---~~~~~~--p~~ 89 (147)
T 2cri_A 15 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVML---QPFDYD--PNE 89 (147)
T ss_dssp SEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEE---CCCCCC--TTC
T ss_pred EEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEE---CCCcCC--ccc
Confidence 34555 8899999999999999999999999999999999999999999999999999999999 675432 357
Q ss_pred CCCceEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCCCC
Q 028668 98 KSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPERP 144 (205)
Q Consensus 98 ~~kDKFLIqs~~v~~~~d~~~elfk~~~~~~i~e~KLrV~f~~p~~p 144 (205)
+|+|||+||++.++++.+++.++|++..+..++++||||+|+.|...
T Consensus 90 ~~kDKFlVqs~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~p~~~ 136 (147)
T 2cri_A 90 KSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNEN 136 (147)
T ss_dssp CSCCCEEEEEEECCTTCCCHHHHHHHSCTTTCEEEEEEEEEECSCCS
T ss_pred cCCCEEEEEEEEcCCCcccHHHHhhcCCCCceEEEEEEEEEecCCCC
Confidence 89999999999999887778999999988899999999999887543
No 2
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=2e-32 Score=214.79 Aligned_cols=110 Identities=25% Similarity=0.435 Sum_probs=101.5
Q ss_pred CeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEE
Q 028668 25 PISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFK 104 (205)
Q Consensus 25 pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kDKFL 104 (205)
.|.|.+++++++++.|+|+|+|+++||||||||+|++|+|||+.|+|.||++++|.|++ ++.... ++++|+|||+
T Consensus 18 ~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~---~~~~~~--p~~~~~dkF~ 92 (128)
T 1z9l_A 18 DLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVML---QPFDYD--PNEKSKHKFM 92 (128)
T ss_dssp EEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEE---CCCCCC--TTCCCCCEEE
T ss_pred eEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEE---CcCcCC--cccccCCEEE
Confidence 38999999999999999999999999999999999999999999999999999999999 675432 3568999999
Q ss_pred EEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEe
Q 028668 105 IISMKVKADVDYVPELFDEQKDQTAAEQILRVVFL 139 (205)
Q Consensus 105 Iqs~~v~~~~d~~~elfk~~~~~~i~e~KLrV~f~ 139 (205)
||++.++++.+++.++|++..+..++++||||+|.
T Consensus 93 V~s~~~~~~~~~~~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 93 VQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp EEEEECCTTCSCHHHHHHSCCGGGCEEEEEEEEEE
T ss_pred EEEEECCCCcchHHHHhhcCCCCceEEEEEEEEEe
Confidence 99999999877789999999888999999999995
No 3
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=99.97 E-value=6.4e-32 Score=218.86 Aligned_cols=120 Identities=22% Similarity=0.281 Sum_probs=104.4
Q ss_pred cceeC---eeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCC
Q 028668 21 SLILP---ISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ 97 (205)
Q Consensus 21 ~~i~p---L~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~ 97 (205)
..|.| |.|.++++++++|.|+|+|+++++||||||||+|++|+|||+.|+|.||++++|.|+| ++.. ..
T Consensus 19 L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~l---q~~~-----~~ 90 (152)
T 1wic_A 19 LHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGGL-----TV 90 (152)
T ss_dssp BCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSSS-----CC
T ss_pred EEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEe---cCcc-----cC
Confidence 44444 7899999999999999999999999999999999999999999999999999999999 5652 13
Q ss_pred CCCceEEEEEEEeC--CCC--CChhhhhhccCCCcceEEEeEEEEeCCC-CCChhH
Q 028668 98 KSRDKFKIISMKVK--ADV--DYVPELFDEQKDQTAAEQILRVVFLNPE-RPEPAL 148 (205)
Q Consensus 98 ~~kDKFLIqs~~v~--~~~--d~~~elfk~~~~~~i~e~KLrV~f~~p~-~ps~~~ 148 (205)
+++|||+||++.++ ++. +++.++|++..+..++++||+|+|+++. ++|+++
T Consensus 91 ~~kDKFlVqs~~v~~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~ 146 (152)
T 1wic_A 91 SAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLML 146 (152)
T ss_dssp CSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSSSCC
T ss_pred CCCCEEEEEEEEcCCcCCCChhhHHHHHhccCCCceEEEEEEEEECCCCCCCCccc
Confidence 78999999999998 443 3578999999888999999999999864 445554
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.96 E-value=4.1e-28 Score=190.71 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=93.5
Q ss_pred CeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEE
Q 028668 25 PISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFK 104 (205)
Q Consensus 25 pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kDKFL 104 (205)
.|.|.++++++++|.|+|+|+|+++||||||||+|++|+|||++|+|.||+++.|.|+| ++.... +. ...+|||+
T Consensus 16 ~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~---q~~~~~-~~-~~~kDKf~ 90 (126)
T 1msp_A 16 KIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSC---DTFNAA-TE-DLNNDRIT 90 (126)
T ss_dssp CEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEE---CCCCGG-GS-CCSSCEEE
T ss_pred eEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEe---cCCCCC-CC-ccCCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999 675443 22 34599999
Q ss_pred EEEEEeCCCCC-ChhhhhhccCCCcceEEEeEEEEe
Q 028668 105 IISMKVKADVD-YVPELFDEQKDQTAAEQILRVVFL 139 (205)
Q Consensus 105 Iqs~~v~~~~d-~~~elfk~~~~~~i~e~KLrV~f~ 139 (205)
||++.++++.+ .....|....+ .+..++|+|.|.
T Consensus 91 Vq~~~~p~~~~~~~~~~wf~~d~-~~~~k~L~V~Yn 125 (126)
T 1msp_A 91 IEWTNTPDGAAKQFRREWFQGDG-MVRRKNLPIEYN 125 (126)
T ss_dssp EEEEECCTTCCSSCCTHHHHSSS-CCEEEEEEEEEE
T ss_pred EEEEECCCCcchhhhHHhhcCCC-ceEEEEEEEEec
Confidence 99999998863 34555555444 578999999996
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.94 E-value=1.5e-26 Score=178.43 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=86.6
Q ss_pred cceeC--eeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCC
Q 028668 21 SLILP--ISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQK 98 (205)
Q Consensus 21 ~~i~p--L~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~ 98 (205)
..|.| |.|.++ ..++.|+|+|+|+.+||||||||+|++|||||+.|+|+||++++|.|++ |++ ..
T Consensus 3 L~i~P~~l~F~~~---~~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~---q~~-------~~ 69 (109)
T 1row_A 3 LTADPPACTVPAA---GVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAG-------AP 69 (109)
T ss_dssp CEEESSSEEEETT---CEEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSC-------CC
T ss_pred EEEECCEeEEeCC---CCeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEe---CCC-------CC
Confidence 34555 677766 3479999999999999999999999999999999999999999999999 553 24
Q ss_pred CCceEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEE
Q 028668 99 SRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV 137 (205)
Q Consensus 99 ~kDKFLIqs~~v~~~~d~~~elfk~~~~~~i~e~KLrV~ 137 (205)
++|||+||++.++++..+..++|++.... ++.+|++.
T Consensus 70 ~~dKflvq~~~~~~~~~d~~~~fk~~~~~--g~~~i~l~ 106 (109)
T 1row_A 70 KEDKLVVHFASAPADATDAQAAFVAVAPA--GTVTIPMS 106 (109)
T ss_dssp EEEEEEEEEEECCTTCSCHHHHHTTCCCC--EEEEEEEE
T ss_pred CCCEEEEEEEECCCCCCCHHHHhhcCCCC--ceEEEEEE
Confidence 69999999999998877789999997653 56677664
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.94 E-value=8e-26 Score=176.52 Aligned_cols=103 Identities=21% Similarity=0.276 Sum_probs=87.9
Q ss_pred ceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCc
Q 028668 22 LILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRD 101 (205)
Q Consensus 22 ~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kD 101 (205)
.+.|..+.|++. ..++.|+|+|+|+.+||||||||+|+.|||||+.|+|+||++++|.|++ +++ ..++|
T Consensus 12 ~~~p~~l~F~~~-gg~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~---q~~-------~~k~D 80 (116)
T 1m1s_A 12 NVDPPTGNYPAT-GGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPG-------PPKED 80 (116)
T ss_dssp EEESSEEEECTT-CEEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSC-------CSCEE
T ss_pred ecCCCeEEEecC-CCEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEe---CCC-------CCCCC
Confidence 355655556554 4699999999999999999999999999999999999999999999999 554 14699
Q ss_pred eEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEE
Q 028668 102 KFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV 137 (205)
Q Consensus 102 KFLIqs~~v~~~~d~~~elfk~~~~~~i~e~KLrV~ 137 (205)
||+||++.++++..++.++|++... .++.+|++.
T Consensus 81 KflVq~~~~~~d~~d~~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 81 KIVIQYAEVPAEETDPMAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEECTTCCCTTHHHHTTCC--CEEEEEEEE
T ss_pred EEEEEEEECCCCCCCHHHHHhcCCC--CceEEEEEE
Confidence 9999999999877778999999765 477888764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.23 E-value=1.2e-05 Score=61.30 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=53.7
Q ss_pred cccceeC--eeeecC-CCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCC
Q 028668 19 VSSLILP--ISSTFP-AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPE 89 (205)
Q Consensus 19 ~~~~i~p--L~F~~e-~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~ 89 (205)
.+.+-+| |.|..- .+...+..+.|+|.++.++.|++++.+ -|.|.|+.|.|.||+++.|.|+. .|.
T Consensus 23 ~~~l~~p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~~--~F~i~P~~g~L~pg~~~~i~V~F---~P~ 91 (122)
T 2ys4_A 23 RAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCR--PFSIEPAIGTLNVGESMQLEVEF---EPQ 91 (122)
T ss_dssp CCCCCCCSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECCT--TEEEESSEEEECTTCEEEEEEEE---CCS
T ss_pred CcEECCCCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecCC--CeEEECCcCEECCCCEEEEEEEE---EcC
Confidence 3444445 445443 566788999999999999999999854 69999999999999999999999 564
No 8
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=97.65 E-value=0.00014 Score=57.24 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=50.7
Q ss_pred Ceeee-cCCCCeEEEEEEEEcCCCCeEEEEEeeC------CCcceeecCCceeeCCCCeEEEEEEee
Q 028668 25 PISST-FPAGKQVRSAIKIKNTSKSHVAFKFQTT------APKSCFMRPPGAILAPGESLIATVFKF 84 (205)
Q Consensus 25 pL~F~-~e~~k~~s~~LtLtN~S~~~VAFKVKTT------aPk~Y~VRP~~GiI~Pges~~I~Vtl~ 84 (205)
.+.|- ..+++..+++|+|+|++.-+..|++... .+.-+.|.|+.|.|.||+++.|.|+++
T Consensus 33 ~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~ 99 (140)
T 3qbt_B 33 EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY 99 (140)
T ss_dssp EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred eEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEE
Confidence 45565 4478889999999999999999999853 234588999999999999999999995
No 9
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.62 E-value=0.0001 Score=54.44 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=48.5
Q ss_pred eeeecC-CCCeEEEEEEEEcCCCCeEEEEEeeCC-C--cceeecCCceeeCCCCeEEEEEEe
Q 028668 26 ISSTFP-AGKQVRSAIKIKNTSKSHVAFKFQTTA-P--KSCFMRPPGAILAPGESLIATVFK 83 (205)
Q Consensus 26 L~F~~e-~~k~~s~~LtLtN~S~~~VAFKVKTTa-P--k~Y~VRP~~GiI~Pges~~I~Vtl 83 (205)
+.|--- .+...+..++|+|+++.++.|++.... . ..|.+.|+.|.|.||++..|.|++
T Consensus 17 ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f 78 (112)
T 2e6j_A 17 LDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISF 78 (112)
T ss_dssp EEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEE
T ss_pred EecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEE
Confidence 444333 577888999999999999999996422 1 569999999999999999999999
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=96.97 E-value=0.0018 Score=58.12 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=50.6
Q ss_pred Ceeee-cCCCCeEEEEEEEEcCCCCeEEEEEeeCCCc-c-----eeecCCceeeCCCCeEEEEEEeec
Q 028668 25 PISST-FPAGKQVRSAIKIKNTSKSHVAFKFQTTAPK-S-----CFMRPPGAILAPGESLIATVFKFV 85 (205)
Q Consensus 25 pL~F~-~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk-~-----Y~VRP~~GiI~Pges~~I~Vtl~~ 85 (205)
.+.|- ..++...+.+|+|+|++.-+..|.+.....+ . +.|.|+.|.|.||+++.|.|++.+
T Consensus 36 ~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v 103 (366)
T 3qis_A 36 EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 103 (366)
T ss_dssp EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred eEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence 35553 4688999999999999999999999864222 2 559999999999999999999954
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=94.90 E-value=0.078 Score=43.83 Aligned_cols=56 Identities=18% Similarity=0.305 Sum_probs=48.4
Q ss_pred eeee-cCCCCeEEEEEEEEcCCCCeEEE-EEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028668 26 ISST-FPAGKQVRSAIKIKNTSKSHVAF-KFQTTAPKSCFMRPPGAILAPGESLIATVFK 83 (205)
Q Consensus 26 L~F~-~e~~k~~s~~LtLtN~S~~~VAF-KVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl 83 (205)
+.|- +. ++..+..++|+|.++.++.. +|+|+ -+...+.++.+.|.||++..|.|++
T Consensus 126 ~dfG~i~-g~~~~~~f~i~N~G~~pL~I~~v~~s-cgct~~~~~~~~i~PGe~~~i~v~~ 183 (220)
T 2qsv_A 126 LDMGQLD-GETTKAAIEIRNVGAGPLRLHSVTTR-NPALTAVPDRTEIKPGGSTLLRIAV 183 (220)
T ss_dssp EEEEECT-TSCEEEEEEEEECSSSCEEEEEEEEC-STTEEEEESCSEECTTCEEEEEEEE
T ss_pred EeeeccC-CCeEEEEEEEEECCCCCEEEEEEEeC-CCCEeeecCCccCCCCCEEEEEEEE
Confidence 4454 34 78889999999999999998 88876 4788888999999999999999999
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=94.22 E-value=0.14 Score=42.30 Aligned_cols=51 Identities=12% Similarity=0.053 Sum_probs=45.6
Q ss_pred CCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028668 32 AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 83 (205)
Q Consensus 32 ~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl 83 (205)
.++..+..++++|+++.++-++.-.. |.....++..+.|+||++..|.|++
T Consensus 17 ~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~ 67 (220)
T 2qsv_A 17 PEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSL 67 (220)
T ss_dssp TTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEE
T ss_pred CCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEE
Confidence 56677789999999999999997654 8888889999999999999999999
No 13
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=87.26 E-value=4.2 Score=36.99 Aligned_cols=70 Identities=24% Similarity=0.256 Sum_probs=53.4
Q ss_pred CCCCccccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCcceee---------cC------------CceeeC
Q 028668 14 YPNGAVSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFM---------RP------------PGAILA 72 (205)
Q Consensus 14 ~~~~~~~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~V---------RP------------~~GiI~ 72 (205)
++++.|.+-+..-.|. .+++..+-+++++|.++++|-..==+|+.-+|.- -| +..-|.
T Consensus 245 ~~~~~V~~~v~~A~Y~-vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~ 323 (382)
T 1yew_A 245 LPAPTVSVKVEDATYR-VPGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLA 323 (382)
T ss_dssp CCCCSEEEEEEEEEEE-SSCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBC
T ss_pred CCCCceEEEeeccEEe-cCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcC
Confidence 6677777777766665 4789999999999999999988866777766632 12 123489
Q ss_pred CCCeEEEEEEee
Q 028668 73 PGESLIATVFKF 84 (205)
Q Consensus 73 Pges~~I~Vtl~ 84 (205)
|||+.+|+|+.+
T Consensus 324 PGETr~~~v~a~ 335 (382)
T 1yew_A 324 PGETRTVDVTAS 335 (382)
T ss_dssp TTCEEEEEEEEE
T ss_pred CCceeEEEEEee
Confidence 999999999984
No 14
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=86.15 E-value=15 Score=31.23 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=70.8
Q ss_pred cccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCC------C----cceeecCCceeeCCCCeEEEEEEeeccCC
Q 028668 19 VSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTA------P----KSCFMRPPGAILAPGESLIATVFKFVELP 88 (205)
Q Consensus 19 ~~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTa------P----k~Y~VRP~~GiI~Pges~~I~Vtl~~~~p 88 (205)
-.+.|.+.++.|+.++. ..+|+|+|.++.++.--+-... | .-|.|-|+.--|+||+...|.|.. ..
T Consensus 28 A~v~i~~TRvIy~~~~k-~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~---~~ 103 (257)
T 3q48_A 28 AGLIAQGTRVVFPASER-EVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAY---LK 103 (257)
T ss_dssp ---CCSCSEEEEETTCS-EEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEE---CC
T ss_pred eeEEEcceEEEEeCCCc-EEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEE---CC
Confidence 35778889999988765 4899999999887665543221 1 139999999999999999999987 22
Q ss_pred CCCCCCCCCCCCceEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCCC
Q 028668 89 ENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 142 (205)
Q Consensus 89 ~~~e~p~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~~~i~e~KLrV~f~~p~ 142 (205)
. ..|.+.. .-|.+....++...+. ....=+.....+|++-|-+..
T Consensus 104 ~--~LP~DrE--Slf~lnv~eIPp~~~~-----~~n~Lqiair~rIKLFyRP~~ 148 (257)
T 3q48_A 104 A--PLPTDRE--SLFWLNILEVPPRDED-----ENNALQFSFRSRFKLFFRPSQ 148 (257)
T ss_dssp C--CCCSSSC--EEEEEEEEEECCC--------------CCEEEEEEEEEECTT
T ss_pred C--CCCCCce--eEEEEEeeecCCCCCC-----CCceEEEEEEEEEEEEEeccc
Confidence 1 1233332 3677777777764322 111113345788888887654
No 15
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=81.44 E-value=4.4 Score=37.24 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=49.5
Q ss_pred CCccccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeCCCccee--------------------e-cCCceeeCCC
Q 028668 16 NGAVSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCF--------------------M-RPPGAILAPG 74 (205)
Q Consensus 16 ~~~~~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~--------------------V-RP~~GiI~Pg 74 (205)
++.|.+-|..-.|. .+++..+-+++++|.++++|-+.==+|+.-+|. + .|+ -|.||
T Consensus 281 ~~~V~~~v~~A~Y~-vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PG 357 (419)
T 3rfr_A 281 KEQVTTELNGGVYK-VPGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPG 357 (419)
T ss_dssp SCCCEEEEEEEEEE-SSSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTT
T ss_pred CCceEEEEeceEEe-cCCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCC
Confidence 55555555555554 378999999999999999998875566665554 1 122 59999
Q ss_pred CeEEEEEEee
Q 028668 75 ESLIATVFKF 84 (205)
Q Consensus 75 es~~I~Vtl~ 84 (205)
|+.+++|..+
T Consensus 358 ETrt~~V~a~ 367 (419)
T 3rfr_A 358 ESKEIVVKIQ 367 (419)
T ss_dssp CEEEEEEEEE
T ss_pred cceEEEEEee
Confidence 9999999984
No 16
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=73.61 E-value=21 Score=29.49 Aligned_cols=87 Identities=11% Similarity=0.159 Sum_probs=61.3
Q ss_pred cccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeC-----CCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 028668 19 VSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 93 (205)
Q Consensus 19 ~~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTT-----aPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~ 93 (205)
-.+.|.+.++-|+.++ -..+|+|+|.++.++.--.-.. ...-|.|-|+.--|+||+...|.|.. ... ..
T Consensus 12 A~v~i~~TRvIy~~~~-k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~---~~~--~l 85 (221)
T 2co7_B 12 FSVKLGATRVIYHAGT-AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVR---TGG--DM 85 (221)
T ss_dssp EECEESCSEEEEETTS-SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEE---CCC--CC
T ss_pred EEEEEcceEEEEcCCC-CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEE---CCC--CC
Confidence 3466778888888776 4679999999988765544321 12249999999999999999999987 221 12
Q ss_pred CCCCCCCceEEEEEEEeCCC
Q 028668 94 PMYQKSRDKFKIISMKVKAD 113 (205)
Q Consensus 94 p~~~~~kDKFLIqs~~v~~~ 113 (205)
|.+. ..-|.+....+++.
T Consensus 86 P~Dr--Eslf~lnv~eIPp~ 103 (221)
T 2co7_B 86 PTDR--ETLQWVCIKAVPPE 103 (221)
T ss_dssp CSSS--CEEEEEEEEEECCC
T ss_pred CCCc--eEEEEEEeecCCCC
Confidence 3332 33677777777754
No 17
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=73.17 E-value=11 Score=27.85 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=37.5
Q ss_pred EEEEEEEEcCCCCeEEEEEeeCCCcceee-cCCceeeCCCCeEEEEEEee
Q 028668 36 VRSAIKIKNTSKSHVAFKFQTTAPKSCFM-RPPGAILAPGESLIATVFKF 84 (205)
Q Consensus 36 ~s~~LtLtN~S~~~VAFKVKTTaPk~Y~V-RP~~GiI~Pges~~I~Vtl~ 84 (205)
-.-+|+|.|.+.++..|.+.........+ .|..=.|.||+...+.|++.
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~ 82 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLG 82 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEE
Confidence 44799999999999999998766444554 35545888999888777763
No 18
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=70.75 E-value=28 Score=28.59 Aligned_cols=107 Identities=13% Similarity=0.179 Sum_probs=67.0
Q ss_pred ceeCeeeecCCCCeEEEEEEEEcCCCC-eEEEEEeeCC-------CcceeecCCceeeCCCCeEEEEEEeeccCCCCCCC
Q 028668 22 LILPISSTFPAGKQVRSAIKIKNTSKS-HVAFKFQTTA-------PKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 93 (205)
Q Consensus 22 ~i~pL~F~~e~~k~~s~~LtLtN~S~~-~VAFKVKTTa-------Pk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~ 93 (205)
.+...++-|+.++ ...+|+|+|.++. ++.--+-... ..-|.|-|+.--|+||+...|.|.. .......
T Consensus 3 ~l~~TRvIy~~~~-k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~---~~~~~~l 78 (218)
T 2xg5_A 3 SLDRTRAVFDGSE-KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLST---TPDISKL 78 (218)
T ss_dssp EESCSEEEEETTS-SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEE---CGGGGGS
T ss_pred EeCceEEEEeCCC-CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEe---cCCCCCC
Confidence 3556677777665 4679999999887 7655543321 2249999999999999999999987 2210112
Q ss_pred CCCCCCCceEEEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCC
Q 028668 94 PMYQKSRDKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNP 141 (205)
Q Consensus 94 p~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~-~~i~e~KLrV~f~~p 141 (205)
|.+. ..-|.+....+++..+. ... +.....+|++-|-+.
T Consensus 79 P~Dr--ESlf~lnv~eIPp~~~~-------~n~lqia~r~rIKlFyRP~ 118 (218)
T 2xg5_A 79 PQDR--ESLFYFNLREIPPRSEK-------ANVLQIALQTKIKLFYRPA 118 (218)
T ss_dssp CSSS--CEEEEEEEEEECCCCCC-------TTEEEEEEEEEEEEEEECG
T ss_pred CCCc--eEEEEEEeecCCCCCCC-------CceEEEEehheeeEEEcCc
Confidence 3333 34677777777653221 111 123367777777654
No 19
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=69.41 E-value=30 Score=28.98 Aligned_cols=88 Identities=11% Similarity=0.090 Sum_probs=60.2
Q ss_pred ccccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEee-----CCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCC
Q 028668 18 AVSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQT-----TAPKSCFMRPPGAILAPGESLIATVFKFVELPENNE 92 (205)
Q Consensus 18 ~~~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKT-----TaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e 92 (205)
+-.+.|...++-|+.++. ..+|+|+|.++.++.--+-. +...-|.|-|+.--|+||+...|.|.. ... .
T Consensus 21 aa~v~l~~TRvIy~~~~k-~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~---~~~--~ 94 (239)
T 4djm_A 21 VFSLHLGATRVVYNPASS-GETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVR---TGG--E 94 (239)
T ss_dssp EECCEESCSEEEECTTSS-CEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEE---CSC--C
T ss_pred EEeEEEcceEEEEeCCCC-EEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEE---CCC--C
Confidence 344568888999988764 57899999988775443321 112249999999999999999999987 221 1
Q ss_pred CCCCCCCCceEEEEEEEeCCC
Q 028668 93 KPMYQKSRDKFKIISMKVKAD 113 (205)
Q Consensus 93 ~p~~~~~kDKFLIqs~~v~~~ 113 (205)
.|.+. ..-|.+....+++.
T Consensus 95 LP~DR--ESlf~lnv~eIPp~ 113 (239)
T 4djm_A 95 FPPDR--ESLQWICVKGIPPK 113 (239)
T ss_dssp CCSSS--CEEEEEEEEEECC-
T ss_pred CCCCc--eEEEEEEEEecCCC
Confidence 23333 34677777777654
No 20
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=67.20 E-value=37 Score=25.42 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=44.8
Q ss_pred eEEEEEEEEcCCCC-eEEEEEeeCCCcceeec--CCce-eeCC--CCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEEE
Q 028668 35 QVRSAIKIKNTSKS-HVAFKFQTTAPKSCFMR--PPGA-ILAP--GESLIATVFKFVELPENNEKPMYQKSRDKFKIISM 108 (205)
Q Consensus 35 ~~s~~LtLtN~S~~-~VAFKVKTTaPk~Y~VR--P~~G-iI~P--ges~~I~Vtl~~~~p~~~e~p~~~~~kDKFLIqs~ 108 (205)
...-.++.+|.+.. -=-|.++.-.||.|.++ |.+| .|.| +..++=.+.+ ..+. ....+=|+.|.+.
T Consensus 30 ~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i--~n~~------~~~lklR~klsY~ 101 (122)
T 3zy7_A 30 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKV--LNPQ------KQQLRMRIKLTFN 101 (122)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEE--ECTT------CCCCCEEEEEEEE
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEE--ECCC------CCCEEEEEEEEEE
Confidence 35677888899865 44699999999998877 7776 6888 6655544444 2332 1234567777665
Q ss_pred E
Q 028668 109 K 109 (205)
Q Consensus 109 ~ 109 (205)
.
T Consensus 102 ~ 102 (122)
T 3zy7_A 102 W 102 (122)
T ss_dssp E
T ss_pred E
Confidence 4
No 21
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=55.62 E-value=27 Score=26.53 Aligned_cols=52 Identities=15% Similarity=0.092 Sum_probs=40.0
Q ss_pred CCCCeEEEEEEEEcCCC-CeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028668 31 PAGKQVRSAIKIKNTSK-SHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 83 (205)
Q Consensus 31 e~~k~~s~~LtLtN~S~-~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl 83 (205)
..++.++-.++++|.+. .-=+|+|+-...+...-.-..+ |.+|++.+|.+..
T Consensus 30 ~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~ 82 (127)
T 3idu_A 30 GVNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNW 82 (127)
T ss_dssp CTTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEE
T ss_pred cCCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEE
Confidence 46889999999999986 4468888865566544333333 9999999999998
No 22
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=54.13 E-value=19 Score=31.81 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=48.6
Q ss_pred EEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEEEEeCCC
Q 028668 38 SAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKAD 113 (205)
Q Consensus 38 ~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kDKFLIqs~~v~~~ 113 (205)
-++.|+|.|+- -|.++-+.+..|.+..+.-.|+++++..+.|.+. .. .....-+|-|.-+.+.++
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~~~~~ 334 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFK---QG------IKGGDVNFEVTNFIVAPD 334 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEEC---TT------CCCCEEEEEEEEEEEETT
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEecc---cc------ccceEEEEEeeeeeecCC
Confidence 58888898876 5677788999999999999999999999999982 11 112345777765554433
No 23
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=52.93 E-value=38 Score=27.56 Aligned_cols=110 Identities=10% Similarity=0.127 Sum_probs=67.6
Q ss_pred ceeCeeeecCCCCeEEEEEEEEcCCCC-eEEEEEeeC-----CCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCC
Q 028668 22 LILPISSTFPAGKQVRSAIKIKNTSKS-HVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPM 95 (205)
Q Consensus 22 ~i~pL~F~~e~~k~~s~~LtLtN~S~~-~VAFKVKTT-----aPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~ 95 (205)
.+...++-|+.++ ...+|+|+|.++. ++.--.-.. ...-|.|-|+.--|+||+...|.|....+ . ..|.
T Consensus 3 ~l~~TRvIy~~~~-k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~---~-~lP~ 77 (205)
T 1klf_A 3 ALGATRVIYPAGQ-KQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATN---N-QLPQ 77 (205)
T ss_dssp EESCSEEEEETTC-SEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSC---S-CSCS
T ss_pred EecceEEEEeCCC-cEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC---C-CCCC
Confidence 3556677777665 4679999999887 765554321 12349999999999999999999986111 1 1233
Q ss_pred CCCCCceEEEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCCC
Q 028668 96 YQKSRDKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPE 142 (205)
Q Consensus 96 ~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~-~~i~e~KLrV~f~~p~ 142 (205)
+. ..-|.+....+++..+... .... +.....+|++-|-+..
T Consensus 78 Dr--Eslf~lnv~eIPp~~~~~~----~~n~lqia~r~riKlFyRP~~ 119 (205)
T 1klf_A 78 DR--ESLFWMNVKAIPSMDKSKL----TENTLQLAIISRIKLYYRPAK 119 (205)
T ss_dssp SS--CEEEEEEEEEECCCCTTST----TSCEEEEEEEEEEEEEEECTT
T ss_pred Cc--eEEEEEEeEecCCCCcccc----CCceEEEEeeeeeeEEEcccc
Confidence 32 3367777777775432100 0111 1223677777776653
No 24
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=52.90 E-value=95 Score=25.48 Aligned_cols=109 Identities=11% Similarity=0.041 Sum_probs=66.1
Q ss_pred ccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEeeC-------CCcceeecCCceeeCCCCeEEEEEEeeccCCCCCC
Q 028668 20 SSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQTT-------APKSCFMRPPGAILAPGESLIATVFKFVELPENNE 92 (205)
Q Consensus 20 ~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKTT-------aPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e 92 (205)
.+.|.-.++-|+.++. ..+|+|+|.++.++.--.... ...-|.|-|+.--|+||+...|.|.. ... .
T Consensus 13 gv~l~~TRvIy~~~~k-~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~---~~~--~ 86 (218)
T 4ay0_A 13 GVTIGESRIIYPLDAA-GVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQ---AGG--V 86 (218)
T ss_dssp CEEESCCEEEEETTCS-CEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEE---CSC--C
T ss_pred eEEECceEEEECCCCc-EEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEe---cCC--C
Confidence 3556667788876654 678999999888765543321 11239999999999999999999987 221 1
Q ss_pred CCCCCCCCceEEEEEEEeCCCCCChhhhhhccCCCcceEEEeEEEEeCC
Q 028668 93 KPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNP 141 (205)
Q Consensus 93 ~p~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~~~i~e~KLrV~f~~p 141 (205)
.|.+. ..-|.+....+++..+... + .=+.....+|++-|-+.
T Consensus 87 LP~DR--ESlf~lnv~eIPp~~~~~~----n-~lqia~r~rIKlFyRP~ 128 (218)
T 4ay0_A 87 FPRDK--ESLKWLCVKGIPPKDEDIW----V-DVQFAINNCIKLLVRPN 128 (218)
T ss_dssp CCSSS--CEEEEEEEEEECC-------------------CEEEEEEECT
T ss_pred CCcCc--EEEEEEEEEecCCCCcccc----c-eeEEEEEEEEEEEEcCc
Confidence 23332 2358877777775432210 0 01223467788877664
No 25
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=48.33 E-value=86 Score=23.68 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=27.5
Q ss_pred CCccccceeCeeeecCCCCeEEEEEEEEcCCCCeEEEEEee
Q 028668 16 NGAVSSLILPISSTFPAGKQVRSAIKIKNTSKSHVAFKFQT 56 (205)
Q Consensus 16 ~~~~~~~i~pL~F~~e~~k~~s~~LtLtN~S~~~VAFKVKT 56 (205)
+|.+=+-|.+-. .+....-.|+|+|+++..+-+-+.+
T Consensus 4 ~~~l~~~v~~~~----~g~~v~~~ltv~N~s~~~v~l~f~S 40 (120)
T 3isy_A 4 NQEVVLSIDAIQ----EPEQIKFNMSLKNQSERAIEFQFST 40 (120)
T ss_dssp CCSEEEEEEEEE----CSSCEEEEEEEEECSSSCEEEEESS
T ss_pred ccEEEEEEeecc----CCCeEEEEEEEEcCCCCcEEEEeCC
Confidence 455555555544 6678899999999999988887744
No 26
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=45.55 E-value=1.2e+02 Score=24.49 Aligned_cols=110 Identities=10% Similarity=0.099 Sum_probs=66.8
Q ss_pred ceeCeeeecCCCCeEEEEEEEEcCCC-CeEEEEEeeC-----CCcceeecCCceeeCCCCeEEEEEE-eeccCCCCCCCC
Q 028668 22 LILPISSTFPAGKQVRSAIKIKNTSK-SHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVF-KFVELPENNEKP 94 (205)
Q Consensus 22 ~i~pL~F~~e~~k~~s~~LtLtN~S~-~~VAFKVKTT-----aPk~Y~VRP~~GiI~Pges~~I~Vt-l~~~~p~~~e~p 94 (205)
.+...++-|+.++ ...+|+|+|.++ .++.--+-.. ...-|.|-|+.--|+||+...|.|. . .. . ..|
T Consensus 3 ~l~~TRvIy~~~~-k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~---~~-~-~lP 76 (206)
T 1l4i_A 3 ALGATRVIYPEGQ-KQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDA---TN-G-QMP 76 (206)
T ss_dssp EESCSEEEEETTC-SEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEEC---CT-T-CSC
T ss_pred EeCceEEEEeCCC-cEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEec---CC-C-CCC
Confidence 3555667777665 467999999986 6655544321 1134999999999999999999998 6 11 1 123
Q ss_pred CCCCCCceEEEEEEEeCCCCCChhhhhhccCC-CcceEEEeEEEEeCCCC
Q 028668 95 MYQKSRDKFKIISMKVKADVDYVPELFDEQKD-QTAAEQILRVVFLNPER 143 (205)
Q Consensus 95 ~~~~~kDKFLIqs~~v~~~~d~~~elfk~~~~-~~i~e~KLrV~f~~p~~ 143 (205)
.+.. .-|.+....+++..+... .... +.....+|++-|-+..-
T Consensus 77 ~DrE--slf~lnv~eIPp~~~~~~----~~n~lqia~r~riKlFyRP~~l 120 (206)
T 1l4i_A 77 EDRE--SLFWVNVKAIPAMDKAKT----GENYLQFAIVSRIKLLYRPQGL 120 (206)
T ss_dssp SSSC--EEEEEEEEEEECCC------------CCCEEEEEEEEEEECTTC
T ss_pred CCce--EEEEEEeecCCCCccccc----CCceEEEEhhheeeEEEecccc
Confidence 3332 366666666665322100 0111 23347888888876543
No 27
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=40.64 E-value=80 Score=30.05 Aligned_cols=65 Identities=18% Similarity=0.118 Sum_probs=44.9
Q ss_pred ccccceeCeeeecCCCCe--EEEEEEEEcCCCCeEEEEEeeCCCcceee--cCCceee-CCCCeEEEEEEe
Q 028668 18 AVSSLILPISSTFPAGKQ--VRSAIKIKNTSKSHVAFKFQTTAPKSCFM--RPPGAIL-APGESLIATVFK 83 (205)
Q Consensus 18 ~~~~~i~pL~F~~e~~k~--~s~~LtLtN~S~~~VAFKVKTTaPk~Y~V--RP~~GiI-~Pges~~I~Vtl 83 (205)
|.|++..+..... .... .+-+-|+||..+..-.|+++-++|.-..| .|..-.. ..|++...+|++
T Consensus 541 NyPs~~~~~~~~~-~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~ 610 (649)
T 3i6s_A 541 NYPSFIALYSIEG-NFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTI 610 (649)
T ss_dssp CCSSEEEEECCSS-CCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEE
T ss_pred CCCcEEeecccCC-CCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEE
Confidence 6666666542111 1111 67888999999888889999999987665 5888766 489999988887
No 28
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=38.06 E-value=98 Score=22.43 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=37.2
Q ss_pred CCCeEEEEEEEEcCCC---CeEEEEEeeCC---CcceeecCCceeeCCCCeEEEEEEe
Q 028668 32 AGKQVRSAIKIKNTSK---SHVAFKFQTTA---PKSCFMRPPGAILAPGESLIATVFK 83 (205)
Q Consensus 32 ~~k~~s~~LtLtN~S~---~~VAFKVKTTa---Pk~Y~VRP~~GiI~Pges~~I~Vtl 83 (205)
-+++....++++|+-. ....|-|--.. +..+. .|-|.||+++.+++.+
T Consensus 18 v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~~----~~~v~pg~~~~~~~~~ 71 (102)
T 2xzz_A 18 VGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKILN----VGDIGGNETVTLRQSF 71 (102)
T ss_dssp SSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEEE----ECCBCTTCEEEEEEEE
T ss_pred cCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEEE----cCcCCCCCEEEEEEEE
Confidence 5788999999999976 56678877533 33333 3679999999999998
No 29
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=32.73 E-value=58 Score=24.53 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=29.2
Q ss_pred EEEEEEcCCCCeEE---EEEeeCCCc---ceeecCCceeeCCCCeEEE
Q 028668 38 SAIKIKNTSKSHVA---FKFQTTAPK---SCFMRPPGAILAPGESLIA 79 (205)
Q Consensus 38 ~~LtLtN~S~~~VA---FKVKTTaPk---~Y~VRP~~GiI~Pges~~I 79 (205)
..++|.|.++..+. |+++-+..+ .|.. |+.=+|+||++++|
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtV 71 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTI 71 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEE
Confidence 47899999987665 777754332 4554 66669999999765
No 30
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=31.29 E-value=1.1e+02 Score=25.84 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=34.5
Q ss_pred CCeEEEEEEEEcCCCCeE-EEEEeeCCCcceeecCCc-----eeeCCCCeEEEEEEee
Q 028668 33 GKQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMRPPG-----AILAPGESLIATVFKF 84 (205)
Q Consensus 33 ~k~~s~~LtLtN~S~~~V-AFKVKTTaPk~Y~VRP~~-----GiI~Pges~~I~Vtl~ 84 (205)
+.++.=.|+++|.+..++ -|.|+-+ .+.|-+-|.. .-|.||+++++.|-+-
T Consensus 54 ~g~i~l~l~~~N~s~~~is~faIQfN-kNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~ 110 (258)
T 2g30_A 54 QGHIYMEMNFTNKALQHMTDFAIQFN-KNSFGVIPSTPLAIHTPLMPNQSIDVSLPLN 110 (258)
T ss_dssp TTEEEEEEEEEECSSSCBCCCEEEEC-CBTTCCEESSCCCCCSCBCTTCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCccceeeeEEEEc-ccccCcccCccccCCCccCCCCcEEEEEeee
Confidence 456778999999987542 2444443 4445444432 4599999999999874
No 31
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=30.63 E-value=1.7e+02 Score=21.81 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=44.5
Q ss_pred CCCeEEEEEEEEcCCCCeE-EEEEeeCCCcceeec--CCce-eeCCC--CeEEEEEEeeccCCCCCCCCCCCCCCceEEE
Q 028668 32 AGKQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMR--PPGA-ILAPG--ESLIATVFKFVELPENNEKPMYQKSRDKFKI 105 (205)
Q Consensus 32 ~~k~~s~~LtLtN~S~~~V-AFKVKTTaPk~Y~VR--P~~G-iI~Pg--es~~I~Vtl~~~~p~~~e~p~~~~~kDKFLI 105 (205)
......-.++.+|.+..+| -|.++.-.|+.|.++ |.+| .|.|+ ..++=.+.+ ..+.. +.....+=|+.|
T Consensus 29 ~~~~~~i~~~fsN~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~L~p~~~~~itQ~~~I--~n~~~---~~~~~lklR~kl 103 (123)
T 3mnm_A 29 SNSVIRIXSFFTNLSSSPISNLVFLLAVPKSMSLXLQPQSSNFMIGNAKDGISQEGTI--ENAPA---NPSKALXVKWKV 103 (123)
T ss_dssp SSSCEEEEEEEEECSSSCEEEEEEEEECCTTSEEEECCCSCSCBCTTCTTCEEEEEEE--ESCCC---C---CCEEEEEE
T ss_pred CCCeEEEEEEEecCCCCccccEEEEEecCcccEEEeECCCcCccCCCCCCCEEEEEEE--ecCCC---CCCCCEEEEEEE
Confidence 3345667788889986544 699999999998877 7777 79998 444433333 23321 011234556666
Q ss_pred EEEE
Q 028668 106 ISMK 109 (205)
Q Consensus 106 qs~~ 109 (205)
.+..
T Consensus 104 sY~~ 107 (123)
T 3mnm_A 104 NYSV 107 (123)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6553
No 32
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=29.91 E-value=46 Score=22.11 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.9
Q ss_pred EEEEEcCCCCeEEEEEeeCCC
Q 028668 39 AIKIKNTSKSHVAFKFQTTAP 59 (205)
Q Consensus 39 ~LtLtN~S~~~VAFKVKTTaP 59 (205)
+|+++..+...+.|||+.|.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 578888888899999998776
No 33
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=28.70 E-value=77 Score=31.57 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=34.7
Q ss_pred EEEEEEEEcCC------CCeEE--------------EEEeeCCCcceeecCCcee--eCCCCeEEEEEEe
Q 028668 36 VRSAIKIKNTS------KSHVA--------------FKFQTTAPKSCFMRPPGAI--LAPGESLIATVFK 83 (205)
Q Consensus 36 ~s~~LtLtN~S------~~~VA--------------FKVKTTaPk~Y~VRP~~Gi--I~Pges~~I~Vtl 83 (205)
-...|+|+|.+ +=.|. |||..-+-+.|.+.|..++ |.||+++.|.++.
T Consensus 40 ~~~~~tl~n~~~~~~~~~w~iyf~~~r~i~~~~~~~~~i~~~~gd~~~l~P~~~f~~~~~g~~~~~~~~~ 109 (858)
T 1c7s_A 40 NRVLFTLSNDGQAIDGKDWVIYFHSPRQTLRVDNDQFKIAHLTGDLYKLEPTAKFSGFPAGKAVEIPVVA 109 (858)
T ss_dssp EEEEEEEEECSSCBCCCCCEEEEECSSCEEEECSTTEEEEECSTTEEEEEECTTCCCBCTTEEEEEEEEE
T ss_pred eEEEEEEEcCCCCcCCCCcEEEEecceeeecCCCCCeeEEEEeCeEEEEecCCCCCccCCCCEEEEEEEe
Confidence 45788888882 22222 5565555666888898886 9999999999974
No 34
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=28.01 E-value=71 Score=25.24 Aligned_cols=66 Identities=12% Similarity=0.171 Sum_probs=50.7
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEeeccCCCCCCCCCCCCCCceEEEEEEEeCCC
Q 028668 37 RSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKAD 113 (205)
Q Consensus 37 s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl~~~~p~~~e~p~~~~~kDKFLIqs~~v~~~ 113 (205)
.-..-|.|.|+-.+.|=.-+...+.+.+| ..|+|+|+.++-|.=.-. . +...-.+|.||.+.-..+
T Consensus 29 ~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~---~-------eln~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 29 PFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTK---D-------VLNEMERVAVQLIAFKDG 94 (147)
T ss_dssp CEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECG---G-------GGGGCSSEEEEEEEECSS
T ss_pred ceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeCh---h-------HhcCCceEEEEEEEEcCC
Confidence 34677899999999999988777777776 789999999988874431 1 223456899999988764
No 35
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=25.50 E-value=2.2e+02 Score=22.66 Aligned_cols=51 Identities=10% Similarity=0.121 Sum_probs=39.2
Q ss_pred CeEEEEEEEEcCCC-----CeEEEEEeeCCCcce-eecCCceeeCCCCeEEEEEEee
Q 028668 34 KQVRSAIKIKNTSK-----SHVAFKFQTTAPKSC-FMRPPGAILAPGESLIATVFKF 84 (205)
Q Consensus 34 k~~s~~LtLtN~S~-----~~VAFKVKTTaPk~Y-~VRP~~GiI~Pges~~I~Vtl~ 84 (205)
......|.|+|+.+ .-++|.++...-..= -+-|..|.|.++.+..+.|-..
T Consensus 62 ~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv~ 118 (174)
T 1yyc_A 62 VDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVK 118 (174)
T ss_dssp EEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEE
T ss_pred EEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEEE
Confidence 45669999999987 467999988644432 4568889999999988887763
No 36
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=24.65 E-value=66 Score=22.73 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCeEEEEEeeCCC
Q 028668 38 SAIKIKNTSKSHVAFKFQTTAP 59 (205)
Q Consensus 38 ~~LtLtN~S~~~VAFKVKTTaP 59 (205)
-+|+++..+...|.|||+.|.+
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEECCCCh
Confidence 4788888888899999998777
No 37
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=24.62 E-value=3.5e+02 Score=23.58 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=45.6
Q ss_pred CeeeecCC----CCeEEEEEEEEcCCCCeEEE-E---EeeCCCcceee-----------------cC---CceeeCCCCe
Q 028668 25 PISSTFPA----GKQVRSAIKIKNTSKSHVAF-K---FQTTAPKSCFM-----------------RP---PGAILAPGES 76 (205)
Q Consensus 25 pL~F~~e~----~k~~s~~LtLtN~S~~~VAF-K---VKTTaPk~Y~V-----------------RP---~~GiI~Pges 76 (205)
+|.+.... .....-.++|+|+++.++-+ | .-...-+.+.| .| ..=.|.||+|
T Consensus 23 ~l~v~Ls~~~~~~~~~~vk~tvtN~g~~~~~lLk~~~lD~~~~~~~~V~~~G~~v~f~Gi~~~~~~~~~d~f~~L~pG~S 102 (343)
T 2x3c_A 23 GLDAQLTLVDGSTDDVRVNLTLTNTGDKPIRLLKWQLPGSDDAPLFLVERDGQPVSYEGALIKRAAPTDKDFQLLKAGQS 102 (343)
T ss_dssp CEEEEEEECCCSSSCCEEEEEEEECSSSCEEEEGGGSCSSSCCCCEEEEETTEECCBCSCCCCCCCCCGGGEEEECTTCE
T ss_pred ceEEEEEecccCCCCeEEEEEEEeCCCCceEeeccCCCCcCccceEEEEeCCcccceeeEEEeccCCChhhcEEeCCCCe
Confidence 67777776 66778899999998887654 0 00000112222 12 1227899999
Q ss_pred EEEEEEeeccCCCCCCCCCCCCCCceEEEEEE
Q 028668 77 LIATVFKFVELPENNEKPMYQKSRDKFKIISM 108 (205)
Q Consensus 77 ~~I~Vtl~~~~p~~~e~p~~~~~kDKFLIqs~ 108 (205)
+++++-+ +... +.....+|-|++-
T Consensus 103 ve~~~dl----a~~y----dLs~gG~y~v~~~ 126 (343)
T 2x3c_A 103 LTVQAEV----SGLY----DMSAQGQYSIRYQ 126 (343)
T ss_dssp EEEEEEC----TTTB----TCCSCEEEEEEEC
T ss_pred EEEEEeh----hhcc----ccCCCceEEEEEe
Confidence 9999998 2212 2334567777654
No 38
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=23.92 E-value=1.2e+02 Score=23.26 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=19.6
Q ss_pred CCCCccccceeCeeeecCCCCeEEEEEEEEcC
Q 028668 14 YPNGAVSSLILPISSTFPAGKQVRSAIKIKNT 45 (205)
Q Consensus 14 ~~~~~~~~~i~pL~F~~e~~k~~s~~LtLtN~ 45 (205)
+|++++..+..| .|..+.++.+ .++++|.
T Consensus 50 ~~~~~~~g~~~p-~i~V~~GD~V--~~~~tN~ 78 (154)
T 2cal_A 50 FPSFEVHDKKNP-TLEIPAGATV--DVTFINT 78 (154)
T ss_dssp SSCEEETTEESC-EEEECTTCEE--EEEEEEC
T ss_pred cccccccCCCCC-EEEEeCCCEE--EEEEEcC
Confidence 556666555434 6888888755 5788886
No 39
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=22.73 E-value=2.1e+02 Score=20.96 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=40.5
Q ss_pred cCCCCeEEEEEEEEcCCCCe--EEEEEeeCCCcceeecCC-ce----eeCCCCeEEEEEEe
Q 028668 30 FPAGKQVRSAIKIKNTSKSH--VAFKFQTTAPKSCFMRPP-GA----ILAPGESLIATVFK 83 (205)
Q Consensus 30 ~e~~k~~s~~LtLtN~S~~~--VAFKVKTTaPk~Y~VRP~-~G----iI~Pges~~I~Vtl 83 (205)
...+...+....|+|.++.+ +.||+-==..+-+-|.|. .. +|.++++..|.-.-
T Consensus 34 ~~~~g~l~~~~~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~l~~va 94 (112)
T 3o0l_A 34 QAEAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVTALS 94 (112)
T ss_dssp ECGGGCEEEEEEEEECSSSCEEEEEEEEEECTTSCBCCCTTCCCEEEEECTTCEEEEEEEC
T ss_pred EecCCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCcEEEEECCCCeEEEEEEC
Confidence 44667788999999999866 888987666777777765 22 48888888777664
No 40
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=22.51 E-value=2.5e+02 Score=26.20 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=37.1
Q ss_pred eEEEEEEEEcCCCCeEEEEEeeCCCcce--eecCCceee-CCCCeEEEEEEe
Q 028668 35 QVRSAIKIKNTSKSHVAFKFQTTAPKSC--FMRPPGAIL-APGESLIATVFK 83 (205)
Q Consensus 35 ~~s~~LtLtN~S~~~VAFKVKTTaPk~Y--~VRP~~GiI-~Pges~~I~Vtl 83 (205)
..+-+-++||.....-.|++..++|.-. .|.|+.=.+ ..|++..++|++
T Consensus 538 ~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~ 589 (621)
T 3vta_A 538 NQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTV 589 (621)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEE
T ss_pred EEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEE
Confidence 3445568999999999999998888754 456877665 467888777776
No 41
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=22.38 E-value=1.4e+02 Score=22.36 Aligned_cols=42 Identities=17% Similarity=0.392 Sum_probs=27.8
Q ss_pred EEEEEEcCCCCeEE---EEEeeCC---CcceeecCCceeeCCCCeEEE
Q 028668 38 SAIKIKNTSKSHVA---FKFQTTA---PKSCFMRPPGAILAPGESLIA 79 (205)
Q Consensus 38 ~~LtLtN~S~~~VA---FKVKTTa---Pk~Y~VRP~~GiI~Pges~~I 79 (205)
..++|.|.++..+. |+++-+. ...-+.=|+.=+|+||++++|
T Consensus 19 ~fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vtI 66 (121)
T 1ifr_A 19 KFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTI 66 (121)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEEE
T ss_pred CEEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEEE
Confidence 47899999887664 5666442 222333466678999998653
No 42
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=22.34 E-value=1.5e+02 Score=22.80 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=36.6
Q ss_pred eEEEEEEEEcCCCC-----eEEEEEeeCCCcce-eecCCceeeCCCCeEEEEEEe
Q 028668 35 QVRSAIKIKNTSKS-----HVAFKFQTTAPKSC-FMRPPGAILAPGESLIATVFK 83 (205)
Q Consensus 35 ~~s~~LtLtN~S~~-----~VAFKVKTTaPk~Y-~VRP~~GiI~Pges~~I~Vtl 83 (205)
.....|.++|+.+. -++|.++...-..- -+-|..|.|.++.+..+.|-.
T Consensus 40 ~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vpv 94 (151)
T 1xo8_A 40 EYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPV 94 (151)
T ss_dssp CEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECC
T ss_pred EEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEEE
Confidence 46689999999874 57899987654443 345777888888888777765
No 43
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=22.17 E-value=2e+02 Score=21.03 Aligned_cols=52 Identities=12% Similarity=0.193 Sum_probs=39.9
Q ss_pred CCCeEEEEEEEEcCCCCeEEEEEeeCCCcceeecCC------ceeeCCCCeEEEEEEe
Q 028668 32 AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPP------GAILAPGESLIATVFK 83 (205)
Q Consensus 32 ~~k~~s~~LtLtN~S~~~VAFKVKTTaPk~Y~VRP~------~GiI~Pges~~I~Vtl 83 (205)
.+......++++|.++..+.||+.==..+-+-|.+. .-+|.++++..|.-+-
T Consensus 34 ~nG~l~v~v~~~s~~~~~l~Yrf~WyD~~G~~v~~~~~~~W~~~~l~g~~~~~i~~va 91 (107)
T 4gio_A 34 SNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVILRKLA 91 (107)
T ss_dssp TTSCEEEEEEECCSSCEEEEEEEEEECTTSCBCCSSCCCCCEEEEECTTCCEEEEEEC
T ss_pred cCCEEEEEEEecCCCceEEEEEEEEECCCCCCcCCCCCCCCEEEEEcCCCeEEEEEEC
Confidence 555677889999999999999998767777777653 2367888888777664
No 44
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=20.65 E-value=1.8e+02 Score=22.53 Aligned_cols=42 Identities=17% Similarity=0.300 Sum_probs=27.1
Q ss_pred EEEEEEcCCCCeEE---EEEeeCCCc--ceeecCCceeeCCCCeEEE
Q 028668 38 SAIKIKNTSKSHVA---FKFQTTAPK--SCFMRPPGAILAPGESLIA 79 (205)
Q Consensus 38 ~~LtLtN~S~~~VA---FKVKTTaPk--~Y~VRP~~GiI~Pges~~I 79 (205)
..++|.|.++..+. |+++=+..+ .-+.=|+.=+|+||++++|
T Consensus 38 kfV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~FP~~~~L~pg~~VtV 84 (144)
T 3jt0_A 38 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTI 84 (144)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEECCTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEcCCCcEECCCCEEEE
Confidence 47899999987664 566532222 1234455568999999765
No 45
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=20.58 E-value=1.4e+02 Score=22.20 Aligned_cols=53 Identities=9% Similarity=-0.006 Sum_probs=35.3
Q ss_pred CCCCeEEEEEEEEcCCC-CeEEEEEeeCCCcceeecCCceeeCCCCeEEEEEEe
Q 028668 31 PAGKQVRSAIKIKNTSK-SHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 83 (205)
Q Consensus 31 e~~k~~s~~LtLtN~S~-~~VAFKVKTTaPk~Y~VRP~~GiI~Pges~~I~Vtl 83 (205)
..++.++-..+|+|.+. ..-+|.|+-...+...=.-..+-|.+|++..|.++.
T Consensus 16 ~~~~~~ti~atVkN~G~~~a~~~~V~ly~~g~~v~t~~v~~LaaG~s~tv~~~w 69 (114)
T 2l0d_A 16 VPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTVTSLESENSTNVDFHW 69 (114)
T ss_dssp CTTSEEEEEEEEEECSSSCBCCEEEEEEETTEEEEEEEESCBCBTCEEEEEEEE
T ss_pred CCCCeEEEEEEEEECCCCCCCCEEEEEEECCEEEcceecccccCCCEEEEEEEE
Confidence 46888999999999975 444566554333322111234459999999999887
Done!