Query 028673
Match_columns 205
No_of_seqs 237 out of 2026
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 15:11:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 100.0 5.2E-31 1.1E-35 200.0 11.6 165 20-196 3-170 (173)
2 PF05175 MTS: Methyltransferas 99.8 2.1E-19 4.6E-24 136.0 13.7 137 22-186 1-145 (170)
3 COG4123 Predicted O-methyltran 99.8 1.2E-19 2.6E-24 143.0 12.4 140 18-184 13-173 (248)
4 COG3897 Predicted methyltransf 99.8 9.6E-20 2.1E-24 136.8 7.5 158 4-187 18-185 (218)
5 KOG3201 Uncharacterized conser 99.8 1.8E-20 3.9E-25 136.5 3.2 142 33-192 4-151 (201)
6 COG2227 UbiG 2-polyprenyl-3-me 99.8 7.5E-19 1.6E-23 136.6 8.7 111 63-189 58-169 (243)
7 PF06325 PrmA: Ribosomal prote 99.8 3.1E-18 6.8E-23 139.3 11.2 140 19-189 126-267 (295)
8 COG2264 PrmA Ribosomal protein 99.8 5E-18 1.1E-22 137.1 11.7 140 21-188 129-270 (300)
9 KOG2793 Putative N2,N2-dimethy 99.8 1.2E-17 2.6E-22 131.7 13.2 150 31-186 49-204 (248)
10 COG2813 RsmC 16S RNA G1207 met 99.8 3.6E-17 7.8E-22 131.6 14.7 142 17-188 123-272 (300)
11 PRK15001 SAM-dependent 23S rib 99.8 4.7E-17 1E-21 136.6 16.1 148 12-184 188-343 (378)
12 PF12847 Methyltransf_18: Meth 99.7 1.4E-17 3E-22 117.2 9.6 104 64-181 1-111 (112)
13 KOG1270 Methyltransferases [Co 99.7 1.8E-17 3.8E-22 130.0 7.5 111 63-186 88-200 (282)
14 PF13847 Methyltransf_31: Meth 99.7 3.4E-16 7.4E-21 116.3 12.2 107 64-184 3-113 (152)
15 TIGR00537 hemK_rel_arch HemK-r 99.7 9.7E-16 2.1E-20 116.9 15.0 116 42-186 8-145 (179)
16 PLN02396 hexaprenyldihydroxybe 99.7 1.6E-16 3.5E-21 131.1 11.2 110 63-186 130-240 (322)
17 PRK11207 tellurite resistance 99.7 1.3E-15 2.8E-20 118.0 12.6 101 64-180 30-133 (197)
18 TIGR00477 tehB tellurite resis 99.6 2.2E-15 4.8E-20 116.5 12.1 101 64-181 30-133 (195)
19 PRK11036 putative S-adenosyl-L 99.6 9.9E-16 2.2E-20 123.2 10.5 109 64-185 44-153 (255)
20 TIGR00406 prmA ribosomal prote 99.6 4.3E-15 9.3E-20 121.5 14.3 138 21-187 126-265 (288)
21 PRK09489 rsmC 16S ribosomal RN 99.6 5.2E-15 1.1E-19 123.4 14.3 134 22-185 166-307 (342)
22 PRK14967 putative methyltransf 99.6 8.5E-15 1.8E-19 115.5 14.7 133 23-184 7-162 (223)
23 PLN02244 tocopherol O-methyltr 99.6 8.8E-15 1.9E-19 122.3 15.0 106 63-182 117-224 (340)
24 PF08241 Methyltransf_11: Meth 99.6 1.6E-15 3.5E-20 102.9 8.0 93 69-179 1-95 (95)
25 PF01209 Ubie_methyltran: ubiE 99.6 1.6E-14 3.5E-19 114.5 13.1 108 64-186 47-158 (233)
26 PRK12335 tellurite resistance 99.6 2.5E-14 5.4E-19 117.0 14.4 101 64-181 120-223 (287)
27 PRK00517 prmA ribosomal protei 99.6 2.6E-14 5.7E-19 114.6 14.2 130 22-186 87-218 (250)
28 TIGR00138 gidB 16S rRNA methyl 99.6 1.6E-14 3.5E-19 110.3 12.4 99 64-182 42-143 (181)
29 PRK00107 gidB 16S rRNA methylt 99.6 3.1E-14 6.7E-19 109.2 13.6 100 64-183 45-147 (187)
30 TIGR00452 methyltransferase, p 99.6 1.9E-14 4.1E-19 118.5 13.2 107 61-182 118-226 (314)
31 PRK15068 tRNA mo(5)U34 methylt 99.6 2.9E-14 6.3E-19 118.2 13.4 106 62-182 120-227 (322)
32 PF03848 TehB: Tellurite resis 99.6 2.5E-14 5.5E-19 109.4 11.3 103 62-181 28-133 (192)
33 COG2230 Cfa Cyclopropane fatty 99.6 6.6E-14 1.4E-18 112.5 14.0 107 60-183 68-178 (283)
34 PLN02233 ubiquinone biosynthes 99.6 5.4E-14 1.2E-18 113.4 13.7 109 64-184 73-185 (261)
35 PTZ00098 phosphoethanolamine N 99.6 5.7E-14 1.2E-18 113.4 13.2 106 62-184 50-159 (263)
36 PF02353 CMAS: Mycolic acid cy 99.6 5.3E-14 1.1E-18 113.9 13.0 121 40-184 45-169 (273)
37 COG2226 UbiE Methylase involve 99.6 3.7E-14 8E-19 111.9 11.6 106 64-184 51-159 (238)
38 COG2263 Predicted RNA methylas 99.6 1.3E-13 2.8E-18 103.6 13.9 105 18-156 14-120 (198)
39 PF13659 Methyltransf_26: Meth 99.6 9.3E-15 2E-19 103.5 6.9 106 65-182 1-116 (117)
40 PRK14968 putative methyltransf 99.6 9.3E-14 2E-18 106.2 12.8 120 39-183 9-150 (188)
41 PLN02336 phosphoethanolamine N 99.6 1.2E-13 2.6E-18 120.3 15.0 107 64-186 266-374 (475)
42 PRK10258 biotin biosynthesis p 99.6 5.6E-14 1.2E-18 112.7 11.7 101 64-184 42-143 (251)
43 TIGR02752 MenG_heptapren 2-hep 99.6 1.1E-13 2.4E-18 109.5 13.3 104 64-182 45-152 (231)
44 PRK11873 arsM arsenite S-adeno 99.5 1.7E-13 3.7E-18 111.1 14.0 105 63-182 76-184 (272)
45 PRK01683 trans-aconitate 2-met 99.5 1.5E-13 3.3E-18 110.6 13.4 99 63-182 30-131 (258)
46 PF08242 Methyltransf_12: Meth 99.5 2.8E-15 6.1E-20 103.3 2.7 95 69-177 1-99 (99)
47 PRK14103 trans-aconitate 2-met 99.5 1.3E-13 2.9E-18 110.8 12.3 97 63-182 28-127 (255)
48 PF13489 Methyltransf_23: Meth 99.5 3E-14 6.5E-19 106.0 7.4 99 62-185 20-119 (161)
49 COG2890 HemK Methylase of poly 99.5 2.6E-13 5.7E-18 110.3 13.1 99 67-182 113-239 (280)
50 smart00828 PKS_MT Methyltransf 99.5 1.8E-13 3.8E-18 107.8 11.6 103 66-183 1-106 (224)
51 PRK15451 tRNA cmo(5)U34 methyl 99.5 1.6E-13 3.4E-18 109.9 11.4 106 64-185 56-168 (247)
52 KOG1499 Protein arginine N-met 99.5 6.3E-14 1.4E-18 114.4 8.4 106 60-179 56-165 (346)
53 TIGR02469 CbiT precorrin-6Y C5 99.5 1.4E-12 3E-17 92.9 14.3 101 64-181 19-122 (124)
54 PRK05134 bifunctional 3-demeth 99.5 4.5E-13 9.8E-18 106.2 12.7 109 62-185 46-155 (233)
55 PF05401 NodS: Nodulation prot 99.5 9.6E-14 2.1E-18 105.5 8.1 99 66-182 45-147 (201)
56 PRK15128 23S rRNA m(5)C1962 me 99.5 1E-12 2.2E-17 111.6 15.3 119 64-192 220-350 (396)
57 TIGR00740 methyltransferase, p 99.5 5.9E-13 1.3E-17 106.0 12.9 107 64-186 53-166 (239)
58 PRK08287 cobalt-precorrin-6Y C 99.5 9.3E-13 2E-17 101.1 13.5 99 64-182 31-132 (187)
59 TIGR00095 RNA methyltransferas 99.5 3.4E-13 7.4E-18 103.7 11.1 113 62-185 47-163 (189)
60 TIGR03533 L3_gln_methyl protei 99.5 4.7E-13 1E-17 109.2 12.3 104 65-183 122-253 (284)
61 PF08003 Methyltransf_9: Prote 99.5 6E-13 1.3E-17 107.3 12.5 106 61-181 112-219 (315)
62 PRK14966 unknown domain/N5-glu 99.5 1.5E-12 3.3E-17 110.0 15.5 119 41-183 237-383 (423)
63 PRK10909 rsmD 16S rRNA m(2)G96 99.5 2.7E-13 5.9E-18 104.9 10.2 107 64-185 53-163 (199)
64 TIGR00080 pimt protein-L-isoas 99.5 9.5E-13 2.1E-17 103.3 13.1 100 62-182 75-178 (215)
65 TIGR03704 PrmC_rel_meth putati 99.5 1.4E-12 3E-17 104.6 13.9 122 41-184 69-219 (251)
66 PRK13944 protein-L-isoaspartat 99.5 2.4E-12 5.2E-17 100.3 14.1 100 63-182 71-174 (205)
67 PRK00121 trmB tRNA (guanine-N( 99.5 5.1E-13 1.1E-17 103.9 9.9 111 64-187 40-162 (202)
68 PRK13942 protein-L-isoaspartat 99.4 2.3E-12 4.9E-17 101.0 13.0 114 41-182 60-177 (212)
69 TIGR00536 hemK_fam HemK family 99.4 2.5E-12 5.3E-17 105.1 13.5 104 66-184 116-247 (284)
70 PRK11805 N5-glutamine S-adenos 99.4 1.4E-12 3E-17 107.5 12.0 103 66-183 135-265 (307)
71 PRK08317 hypothetical protein; 99.4 4.6E-12 9.9E-17 100.1 14.3 105 62-182 17-125 (241)
72 COG1092 Predicted SAM-dependen 99.4 8.4E-13 1.8E-17 111.1 10.5 157 15-193 179-348 (393)
73 PLN02490 MPBQ/MSBQ methyltrans 99.4 1.2E-12 2.5E-17 108.8 11.2 101 64-182 113-216 (340)
74 PRK11783 rlmL 23S rRNA m(2)G24 99.4 4E-12 8.6E-17 115.4 15.6 114 64-189 538-664 (702)
75 TIGR02072 BioC biotin biosynth 99.4 1.6E-12 3.5E-17 102.8 11.5 100 64-182 34-136 (240)
76 PRK00216 ubiE ubiquinone/menaq 99.4 5.2E-12 1.1E-16 100.0 14.1 105 64-182 51-159 (239)
77 TIGR01983 UbiG ubiquinone bios 99.4 3.4E-12 7.3E-17 100.4 12.8 109 63-185 44-153 (224)
78 PRK11705 cyclopropane fatty ac 99.4 2.6E-12 5.7E-17 108.8 12.5 100 62-182 165-268 (383)
79 TIGR03534 RF_mod_PrmC protein- 99.4 4.9E-12 1.1E-16 101.1 13.5 121 39-183 70-219 (251)
80 PRK00377 cbiT cobalt-precorrin 99.4 4.6E-12 1E-16 98.1 12.6 104 62-181 38-145 (198)
81 PRK04266 fibrillarin; Provisio 99.4 4E-12 8.7E-17 100.3 12.3 106 62-183 70-178 (226)
82 PF13649 Methyltransf_25: Meth 99.4 4.4E-13 9.6E-18 92.7 6.1 92 68-175 1-101 (101)
83 TIGR02021 BchM-ChlM magnesium 99.4 2.5E-12 5.4E-17 101.1 10.8 99 63-178 54-155 (219)
84 PRK09328 N5-glutamine S-adenos 99.4 8.7E-12 1.9E-16 101.1 14.3 120 40-182 91-239 (275)
85 PRK00312 pcm protein-L-isoaspa 99.4 9.6E-12 2.1E-16 97.3 14.0 100 62-182 76-176 (212)
86 TIGR02716 C20_methyl_CrtF C-20 99.4 6.6E-12 1.4E-16 103.5 13.4 103 64-182 149-255 (306)
87 TIGR03840 TMPT_Se_Te thiopurin 99.4 6.8E-12 1.5E-16 98.2 12.4 127 41-180 19-151 (213)
88 TIGR01177 conserved hypothetic 99.4 8.6E-12 1.9E-16 103.9 13.6 108 63-185 181-298 (329)
89 PRK01544 bifunctional N5-gluta 99.4 6E-12 1.3E-16 110.2 11.9 105 64-183 138-271 (506)
90 TIGR00091 tRNA (guanine-N(7)-) 99.4 3.9E-12 8.4E-17 98.3 9.4 110 64-185 16-136 (194)
91 COG2518 Pcm Protein-L-isoaspar 99.4 9.7E-12 2.1E-16 95.7 11.1 101 61-182 69-170 (209)
92 PLN02585 magnesium protoporphy 99.4 1.3E-11 2.7E-16 101.9 12.3 105 63-182 143-250 (315)
93 COG2242 CobL Precorrin-6B meth 99.4 1.9E-11 4.1E-16 92.2 12.1 103 62-183 32-137 (187)
94 PF03602 Cons_hypoth95: Conser 99.3 1.1E-12 2.3E-17 100.4 5.2 111 63-185 41-157 (183)
95 PRK07402 precorrin-6B methylas 99.3 3.3E-11 7.1E-16 93.2 13.6 104 64-185 40-146 (196)
96 PRK05785 hypothetical protein; 99.3 1.8E-11 3.9E-16 96.8 12.1 88 64-174 51-140 (226)
97 PRK13168 rumA 23S rRNA m(5)U19 99.3 3.5E-11 7.5E-16 104.1 14.9 125 42-189 282-408 (443)
98 PLN02336 phosphoethanolamine N 99.3 9.9E-12 2.2E-16 108.3 11.6 103 64-181 37-142 (475)
99 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 5.4E-11 1.2E-15 93.2 13.8 103 64-183 39-145 (223)
100 KOG1500 Protein arginine N-met 99.3 7.5E-12 1.6E-16 101.6 8.9 106 60-181 173-282 (517)
101 PRK03522 rumB 23S rRNA methylu 99.3 5.1E-11 1.1E-15 98.7 13.8 109 64-189 173-282 (315)
102 PRK06922 hypothetical protein; 99.3 1.4E-11 3.1E-16 108.8 10.7 106 63-182 417-538 (677)
103 PRK13255 thiopurine S-methyltr 99.3 3.5E-11 7.5E-16 94.6 11.9 125 42-179 23-153 (218)
104 PRK07580 Mg-protoporphyrin IX 99.3 2.1E-11 4.5E-16 96.3 10.7 94 63-173 62-158 (230)
105 PF10672 Methyltrans_SAM: S-ad 99.3 1.9E-11 4.2E-16 99.1 10.3 156 14-192 86-249 (286)
106 PRK06202 hypothetical protein; 99.3 3E-11 6.5E-16 95.8 10.7 102 64-185 60-170 (232)
107 cd02440 AdoMet_MTases S-adenos 99.3 3.5E-11 7.6E-16 81.7 9.6 100 67-180 1-103 (107)
108 TIGR02085 meth_trns_rumB 23S r 99.3 6.6E-11 1.4E-15 100.2 13.3 109 64-189 233-342 (374)
109 TIGR03587 Pse_Me-ase pseudamin 99.3 4.4E-11 9.5E-16 93.1 11.2 95 64-181 43-142 (204)
110 KOG1271 Methyltransferases [Ge 99.3 4.2E-12 9.2E-17 94.8 4.9 128 37-182 40-182 (227)
111 PLN02781 Probable caffeoyl-CoA 99.3 3.7E-11 8E-16 95.4 10.5 104 64-181 68-178 (234)
112 KOG2920 Predicted methyltransf 99.3 9.8E-13 2.1E-17 104.9 1.5 162 30-201 86-258 (282)
113 COG0742 N6-adenine-specific me 99.3 2E-11 4.2E-16 92.5 8.4 112 62-185 41-158 (187)
114 PLN02672 methionine S-methyltr 99.3 7.9E-11 1.7E-15 109.8 13.8 140 40-187 100-284 (1082)
115 PHA03412 putative methyltransf 99.3 5E-11 1.1E-15 93.7 10.4 92 64-176 49-158 (241)
116 PRK10901 16S rRNA methyltransf 99.3 1.1E-10 2.3E-15 100.6 13.3 105 64-182 244-373 (427)
117 KOG3420 Predicted RNA methylas 99.3 6.1E-12 1.3E-16 90.6 4.6 107 20-156 18-126 (185)
118 PRK14902 16S rRNA methyltransf 99.3 9.6E-11 2.1E-15 101.4 12.8 105 64-182 250-380 (444)
119 KOG4300 Predicted methyltransf 99.3 4.8E-11 1E-15 90.9 9.5 114 67-194 79-196 (252)
120 TIGR00479 rumA 23S rRNA (uraci 99.2 1.7E-10 3.7E-15 99.5 14.0 107 64-185 292-400 (431)
121 PHA03411 putative methyltransf 99.2 5.5E-11 1.2E-15 95.4 10.0 99 65-184 65-186 (279)
122 PRK13943 protein-L-isoaspartat 99.2 2.1E-10 4.5E-15 94.9 13.3 100 62-182 78-181 (322)
123 KOG1540 Ubiquinone biosynthesi 99.2 1.7E-10 3.8E-15 90.5 11.8 108 62-181 98-214 (296)
124 PLN03075 nicotianamine synthas 99.2 1.6E-10 3.5E-15 93.9 12.1 104 64-181 123-233 (296)
125 smart00138 MeTrc Methyltransfe 99.2 5.7E-11 1.2E-15 96.0 9.3 118 64-184 99-245 (264)
126 COG4976 Predicted methyltransf 99.2 1.8E-12 3.9E-17 100.1 0.4 98 66-182 127-226 (287)
127 TIGR00446 nop2p NOL1/NOP2/sun 99.2 3.5E-10 7.6E-15 91.5 13.3 108 64-186 71-204 (264)
128 KOG2904 Predicted methyltransf 99.2 4.6E-10 1E-14 89.0 13.2 112 62-186 146-290 (328)
129 TIGR03438 probable methyltrans 99.2 1.6E-10 3.4E-15 95.2 11.2 112 64-186 63-182 (301)
130 smart00650 rADc Ribosomal RNA 99.2 2.9E-10 6.2E-15 85.9 11.5 98 64-181 13-113 (169)
131 PF01135 PCMT: Protein-L-isoas 99.2 1.1E-10 2.4E-15 91.0 9.1 101 61-182 69-173 (209)
132 PRK14903 16S rRNA methyltransf 99.2 4.2E-10 9.2E-15 96.9 13.5 109 64-186 237-371 (431)
133 PTZ00146 fibrillarin; Provisio 99.2 3.9E-10 8.4E-15 91.5 12.3 132 35-186 106-242 (293)
134 PRK14901 16S rRNA methyltransf 99.2 6.1E-10 1.3E-14 96.1 14.1 107 64-182 252-385 (434)
135 PRK14121 tRNA (guanine-N(7)-)- 99.2 2.7E-10 5.9E-15 95.8 11.4 109 64-185 122-239 (390)
136 PRK11727 23S rRNA mA1618 methy 99.2 1.6E-10 3.6E-15 95.3 9.8 84 64-158 114-203 (321)
137 PRK11088 rrmA 23S rRNA methylt 99.2 4.2E-10 9.1E-15 91.4 11.9 94 64-184 85-184 (272)
138 TIGR02143 trmA_only tRNA (urac 99.2 7.2E-10 1.6E-14 93.1 13.6 107 66-189 199-319 (353)
139 PRK04457 spermidine synthase; 99.2 2.3E-10 5.1E-15 92.3 10.1 108 64-186 66-182 (262)
140 PRK11188 rrmJ 23S rRNA methylt 99.2 3.2E-10 6.9E-15 88.6 10.6 100 63-184 50-168 (209)
141 PRK05031 tRNA (uracil-5-)-meth 99.1 1E-09 2.3E-14 92.5 13.2 104 66-186 208-325 (362)
142 TIGR00563 rsmB ribosomal RNA s 99.1 1.2E-09 2.6E-14 94.0 13.9 120 40-182 225-369 (426)
143 PRK14904 16S rRNA methyltransf 99.1 2.1E-09 4.5E-14 93.1 15.3 122 37-184 233-380 (445)
144 COG4106 Tam Trans-aconitate me 99.1 2.5E-10 5.4E-15 87.6 7.5 99 64-183 30-131 (257)
145 PF07021 MetW: Methionine bios 99.1 4.4E-10 9.5E-15 85.4 8.2 96 64-182 13-110 (193)
146 PF01596 Methyltransf_3: O-met 99.1 4.6E-10 1E-14 87.2 7.8 105 64-182 45-156 (205)
147 PLN02476 O-methyltransferase 99.1 1.5E-09 3.3E-14 87.8 10.8 104 64-181 118-228 (278)
148 TIGR00438 rrmJ cell division p 99.1 7.1E-09 1.5E-13 79.6 14.0 101 61-183 29-148 (188)
149 COG4122 Predicted O-methyltran 99.1 2.2E-09 4.7E-14 83.8 10.6 106 64-184 59-169 (219)
150 PRK04338 N(2),N(2)-dimethylgua 99.0 1.4E-09 3E-14 92.2 9.7 97 65-180 58-157 (382)
151 PRK13256 thiopurine S-methyltr 99.0 5.2E-09 1.1E-13 82.3 12.2 131 40-181 27-163 (226)
152 KOG3191 Predicted N6-DNA-methy 99.0 3.7E-09 8E-14 79.1 10.6 128 41-189 24-176 (209)
153 COG2519 GCD14 tRNA(1-methylade 99.0 5.5E-09 1.2E-13 82.4 11.8 103 61-183 91-197 (256)
154 PRK00811 spermidine synthase; 99.0 2.8E-09 6.1E-14 87.0 10.3 110 64-182 76-192 (283)
155 TIGR00478 tly hemolysin TlyA f 99.0 7.3E-09 1.6E-13 81.7 11.8 114 37-181 55-171 (228)
156 TIGR02081 metW methionine bios 99.0 3.6E-09 7.7E-14 81.7 9.5 96 64-182 13-110 (194)
157 PRK14896 ksgA 16S ribosomal RN 99.0 3.8E-09 8.3E-14 85.1 9.7 76 62-156 27-103 (258)
158 PF02475 Met_10: Met-10+ like- 99.0 2.2E-09 4.7E-14 83.0 7.8 97 63-178 100-199 (200)
159 PF00891 Methyltransf_2: O-met 99.0 8.8E-09 1.9E-13 82.1 11.1 99 64-186 100-204 (241)
160 PF05185 PRMT5: PRMT5 arginine 99.0 5.7E-09 1.2E-13 90.0 10.7 100 64-178 186-294 (448)
161 TIGR00308 TRM1 tRNA(guanine-26 98.9 7.8E-09 1.7E-13 87.2 10.5 99 65-181 45-147 (374)
162 PTZ00338 dimethyladenosine tra 98.9 1.3E-08 2.7E-13 83.5 11.4 80 62-157 34-114 (294)
163 PRK00274 ksgA 16S ribosomal RN 98.9 1.4E-08 3E-13 82.5 11.2 76 63-156 41-117 (272)
164 COG2265 TrmA SAM-dependent met 98.9 9.8E-09 2.1E-13 88.1 10.7 126 42-189 278-404 (432)
165 PLN02589 caffeoyl-CoA O-methyl 98.9 1.1E-08 2.4E-13 81.6 9.8 103 64-180 79-189 (247)
166 PRK04148 hypothetical protein; 98.9 8.1E-09 1.8E-13 74.5 7.9 80 44-151 3-84 (134)
167 KOG1541 Predicted protein carb 98.9 8.4E-09 1.8E-13 79.5 8.2 106 64-188 50-167 (270)
168 TIGR00417 speE spermidine synt 98.9 2.3E-08 5E-13 81.1 10.8 112 64-185 72-190 (270)
169 KOG3010 Methyltransferase [Gen 98.9 3.4E-09 7.3E-14 82.7 5.1 104 66-184 35-139 (261)
170 KOG2899 Predicted methyltransf 98.9 2.2E-08 4.7E-13 78.3 9.4 121 60-180 54-208 (288)
171 PF05958 tRNA_U5-meth_tr: tRNA 98.8 5.1E-08 1.1E-12 82.0 12.0 146 17-189 159-318 (352)
172 KOG2361 Predicted methyltransf 98.8 1.1E-08 2.3E-13 80.0 7.1 108 67-187 74-189 (264)
173 PRK03612 spermidine synthase; 98.8 1.8E-08 3.8E-13 88.9 9.4 116 64-186 297-420 (521)
174 PF05219 DREV: DREV methyltran 98.8 5.5E-08 1.2E-12 77.1 11.0 96 63-182 93-189 (265)
175 PF08704 GCD14: tRNA methyltra 98.8 7.2E-08 1.6E-12 76.9 10.6 106 61-182 37-147 (247)
176 COG1041 Predicted DNA modifica 98.8 8.7E-08 1.9E-12 79.0 11.0 118 42-182 182-311 (347)
177 PF06080 DUF938: Protein of un 98.8 7.4E-08 1.6E-12 74.2 9.6 109 67-186 28-146 (204)
178 KOG2187 tRNA uracil-5-methyltr 98.8 7.5E-08 1.6E-12 82.6 10.3 125 41-185 367-494 (534)
179 TIGR00755 ksgA dimethyladenosi 98.7 1.3E-07 2.8E-12 76.0 11.1 75 62-155 27-105 (253)
180 COG2520 Predicted methyltransf 98.7 7.4E-08 1.6E-12 79.8 9.8 106 64-187 188-295 (341)
181 PF05724 TPMT: Thiopurine S-me 98.7 4.7E-08 1E-12 76.8 8.0 128 41-181 22-156 (218)
182 PRK01581 speE spermidine synth 98.7 8.3E-08 1.8E-12 80.1 9.8 107 64-182 150-269 (374)
183 PLN02366 spermidine synthase 98.7 2E-07 4.3E-12 76.9 10.5 108 64-181 91-206 (308)
184 PF01170 UPF0020: Putative RNA 98.7 1E-07 2.3E-12 72.7 7.9 107 64-185 28-154 (179)
185 PF09445 Methyltransf_15: RNA 98.6 5.3E-08 1.1E-12 72.7 5.6 77 67-154 2-79 (163)
186 PF03291 Pox_MCEL: mRNA cappin 98.6 2.1E-07 4.6E-12 77.4 8.6 141 36-185 41-190 (331)
187 COG3963 Phospholipid N-methylt 98.6 5.6E-07 1.2E-11 66.7 9.5 119 37-179 28-154 (194)
188 KOG1661 Protein-L-isoaspartate 98.6 6.8E-07 1.5E-11 68.6 10.0 110 62-182 80-194 (237)
189 PF02390 Methyltransf_4: Putat 98.6 3.4E-07 7.3E-12 70.8 8.1 109 66-186 19-138 (195)
190 PRK11783 rlmL 23S rRNA m(2)G24 98.5 4.2E-06 9.1E-11 76.5 16.1 153 13-183 138-349 (702)
191 PF05971 Methyltransf_10: Prot 98.5 7.6E-07 1.6E-11 72.6 9.0 84 65-159 103-192 (299)
192 PF02527 GidB: rRNA small subu 98.5 9.2E-07 2E-11 67.6 8.2 96 67-182 51-149 (184)
193 PLN02232 ubiquinone biosynthes 98.4 1.2E-06 2.5E-11 65.6 7.9 83 90-184 1-84 (160)
194 KOG1975 mRNA cap methyltransfe 98.4 2.1E-06 4.4E-11 70.0 9.7 118 64-187 117-243 (389)
195 COG0220 Predicted S-adenosylme 98.4 2.2E-06 4.7E-11 67.6 9.3 109 66-186 50-169 (227)
196 COG4076 Predicted RNA methylas 98.4 6.1E-07 1.3E-11 67.8 4.9 97 65-178 33-132 (252)
197 PF01739 CheR: CheR methyltran 98.3 1.4E-06 3E-11 67.3 6.7 119 65-186 32-180 (196)
198 PLN02823 spermine synthase 98.3 3E-06 6.6E-11 70.7 9.1 106 64-181 103-220 (336)
199 COG2521 Predicted archaeal met 98.3 7.9E-07 1.7E-11 69.4 5.2 107 64-181 134-245 (287)
200 PF05891 Methyltransf_PK: AdoM 98.3 5.3E-07 1.2E-11 69.9 4.1 107 64-185 55-165 (218)
201 PF01861 DUF43: Protein of unk 98.3 2.4E-05 5.3E-10 61.6 13.3 133 32-188 20-156 (243)
202 PF02384 N6_Mtase: N-6 DNA Met 98.3 5.8E-06 1.3E-10 68.3 10.1 110 64-184 46-186 (311)
203 COG1352 CheR Methylase of chem 98.3 6.7E-06 1.5E-10 66.3 9.8 119 65-186 97-246 (268)
204 PRK11933 yebU rRNA (cytosine-C 98.3 1.5E-05 3.2E-10 69.4 12.3 105 64-182 113-243 (470)
205 TIGR02987 met_A_Alw26 type II 98.3 7.9E-06 1.7E-10 72.4 10.6 81 64-156 31-124 (524)
206 COG0357 GidB Predicted S-adeno 98.2 7.1E-06 1.5E-10 64.0 8.7 95 65-179 68-166 (215)
207 COG0030 KsgA Dimethyladenosine 98.2 2.1E-05 4.6E-10 63.0 11.6 79 62-156 28-107 (259)
208 PRK10611 chemotaxis methyltran 98.2 6.2E-06 1.3E-10 67.3 8.6 117 66-184 117-265 (287)
209 PF08123 DOT1: Histone methyla 98.2 5E-06 1.1E-10 64.7 7.4 114 62-179 40-156 (205)
210 KOG0820 Ribosomal RNA adenine 98.2 1.4E-05 3.1E-10 63.8 9.6 96 33-152 35-131 (315)
211 KOG1501 Arginine N-methyltrans 98.2 3.5E-06 7.7E-11 71.2 6.5 96 67-175 69-169 (636)
212 KOG2940 Predicted methyltransf 98.2 5E-06 1.1E-10 64.9 6.5 100 65-181 73-174 (325)
213 COG0116 Predicted N6-adenine-s 98.2 0.00012 2.6E-09 61.5 15.0 148 13-181 140-344 (381)
214 PRK00536 speE spermidine synth 98.2 2.8E-05 6E-10 62.6 10.8 104 64-186 72-176 (262)
215 PF12147 Methyltransf_20: Puta 98.2 3.8E-05 8.1E-10 62.1 11.2 115 64-189 135-257 (311)
216 COG1189 Predicted rRNA methyla 98.1 4.2E-05 9.1E-10 60.1 10.9 116 37-181 59-178 (245)
217 PRK11760 putative 23S rRNA C24 98.1 8.1E-05 1.8E-09 61.8 12.7 119 40-183 187-307 (357)
218 KOG1663 O-methyltransferase [S 98.1 4E-05 8.6E-10 59.8 10.1 105 63-181 72-183 (237)
219 TIGR01444 fkbM_fam methyltrans 98.1 1.2E-05 2.7E-10 58.5 6.8 44 67-110 1-47 (143)
220 PF00398 RrnaAD: Ribosomal RNA 98.1 1.5E-05 3.2E-10 64.5 7.2 92 64-172 30-122 (262)
221 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.0 6.2E-06 1.3E-10 66.1 4.0 123 60-182 52-200 (256)
222 COG0144 Sun tRNA and rRNA cyto 98.0 0.00026 5.6E-09 59.7 13.5 114 63-188 155-295 (355)
223 PRK01544 bifunctional N5-gluta 97.9 6.6E-05 1.4E-09 66.2 9.4 110 64-186 347-467 (506)
224 KOG2497 Predicted methyltransf 97.9 8.9E-06 1.9E-10 65.3 3.6 124 32-171 65-190 (262)
225 PF03141 Methyltransf_29: Puta 97.9 3.1E-05 6.8E-10 66.8 7.0 99 67-185 120-223 (506)
226 PF05148 Methyltransf_8: Hypot 97.9 0.00017 3.7E-09 55.8 10.1 115 37-193 53-171 (219)
227 COG0421 SpeE Spermidine syntha 97.9 9.5E-05 2.1E-09 60.2 8.9 105 66-181 78-190 (282)
228 PF04816 DUF633: Family of unk 97.9 0.00017 3.7E-09 56.1 9.6 106 68-189 1-109 (205)
229 PRK10742 putative methyltransf 97.8 8E-05 1.7E-09 59.2 7.7 85 67-157 91-176 (250)
230 PF01564 Spermine_synth: Sperm 97.8 7.7E-05 1.7E-09 59.7 7.5 113 64-187 76-197 (246)
231 PF13679 Methyltransf_32: Meth 97.8 0.00029 6.2E-09 51.5 9.9 47 63-109 24-77 (141)
232 PHA01634 hypothetical protein 97.8 4.2E-05 9.2E-10 54.3 4.9 51 60-110 24-76 (156)
233 COG0500 SmtA SAM-dependent met 97.8 0.00071 1.5E-08 48.3 11.6 104 68-186 52-160 (257)
234 PF11968 DUF3321: Putative met 97.8 0.00016 3.4E-09 56.2 8.2 113 41-185 31-153 (219)
235 KOG3987 Uncharacterized conser 97.8 9.4E-06 2E-10 62.4 1.1 94 65-182 113-208 (288)
236 KOG1709 Guanidinoacetate methy 97.7 0.00024 5.2E-09 55.1 8.3 105 63-182 100-207 (271)
237 PF01728 FtsJ: FtsJ-like methy 97.7 2.9E-05 6.2E-10 59.1 3.3 50 40-95 4-57 (181)
238 PF07942 N2227: N2227-like pro 97.7 0.00058 1.3E-08 55.2 10.6 114 62-180 54-201 (270)
239 PF01269 Fibrillarin: Fibrilla 97.7 0.0012 2.5E-08 51.7 11.3 134 34-187 46-184 (229)
240 KOG3045 Predicted RNA methylas 97.7 0.00058 1.3E-08 54.4 9.7 96 64-192 180-276 (325)
241 PRK00050 16S rRNA m(4)C1402 me 97.6 0.00017 3.7E-09 59.2 6.4 44 64-107 19-66 (296)
242 PF03059 NAS: Nicotianamine sy 97.6 0.0011 2.4E-08 53.8 10.8 103 66-182 122-231 (276)
243 PF09243 Rsm22: Mitochondrial 97.6 0.00055 1.2E-08 55.7 8.9 103 62-182 31-140 (274)
244 TIGR03439 methyl_EasF probable 97.5 0.00074 1.6E-08 56.0 8.6 109 64-184 76-200 (319)
245 COG0293 FtsJ 23S rRNA methylas 97.4 0.0013 2.8E-08 50.9 8.6 99 64-185 45-163 (205)
246 KOG2730 Methylase [General fun 97.3 8.9E-05 1.9E-09 57.6 1.6 81 65-156 95-177 (263)
247 COG2384 Predicted SAM-dependen 97.3 0.0089 1.9E-07 46.6 11.7 109 65-189 17-128 (226)
248 KOG2915 tRNA(1-methyladenosine 97.2 0.008 1.7E-07 48.4 11.5 105 61-182 102-210 (314)
249 PF13578 Methyltransf_24: Meth 97.1 7.4E-05 1.6E-09 51.7 -0.8 96 69-179 1-103 (106)
250 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.1 0.0027 5.8E-08 52.0 8.1 123 37-182 68-220 (283)
251 KOG3178 Hydroxyindole-O-methyl 97.0 0.0039 8.5E-08 51.8 7.8 94 66-182 179-276 (342)
252 COG1889 NOP1 Fibrillarin-like 97.0 0.017 3.8E-07 44.5 10.7 133 36-188 51-187 (231)
253 cd00315 Cyt_C5_DNA_methylase C 96.9 0.002 4.4E-08 52.4 5.4 39 67-105 2-42 (275)
254 COG1568 Predicted methyltransf 96.9 0.0076 1.7E-07 48.6 8.3 120 60-196 148-271 (354)
255 COG4262 Predicted spermidine s 96.9 0.0081 1.8E-07 50.3 8.7 117 66-191 291-417 (508)
256 PF02005 TRM: N2,N2-dimethylgu 96.8 0.0032 7E-08 53.5 6.4 101 65-182 50-155 (377)
257 KOG1269 SAM-dependent methyltr 96.8 0.0047 1E-07 52.2 7.1 105 62-181 108-215 (364)
258 COG5459 Predicted rRNA methyla 96.7 0.0032 6.9E-08 52.4 5.2 106 61-182 110-226 (484)
259 KOG0024 Sorbitol dehydrogenase 96.6 0.0049 1.1E-07 50.8 5.8 97 62-181 167-273 (354)
260 COG3129 Predicted SAM-dependen 96.6 0.0044 9.5E-08 48.7 5.0 84 64-157 78-166 (292)
261 PRK09424 pntA NAD(P) transhydr 96.6 0.057 1.2E-06 47.7 12.5 102 62-182 162-286 (509)
262 COG1064 AdhP Zn-dependent alco 96.6 0.014 2.9E-07 48.8 8.2 96 61-183 163-261 (339)
263 PF04672 Methyltransf_19: S-ad 96.4 0.013 2.8E-07 47.3 6.9 108 67-187 71-196 (267)
264 KOG2078 tRNA modification enzy 96.3 0.0078 1.7E-07 51.3 5.1 70 33-110 226-296 (495)
265 KOG4589 Cell division protein 96.3 0.034 7.3E-07 42.5 7.9 100 64-186 69-189 (232)
266 PF01555 N6_N4_Mtase: DNA meth 96.2 0.015 3.3E-07 45.2 6.0 57 39-103 174-231 (231)
267 KOG2671 Putative RNA methylase 96.1 0.019 4E-07 47.8 6.1 111 63-186 207-359 (421)
268 PF04445 SAM_MT: Putative SAM- 96.1 0.032 7E-07 44.2 7.3 83 66-157 77-163 (234)
269 COG1867 TRM1 N2,N2-dimethylgua 96.0 0.034 7.3E-07 46.7 7.7 100 65-182 53-155 (380)
270 KOG1227 Putative methyltransfe 96.0 0.0054 1.2E-07 50.0 2.8 47 64-110 194-243 (351)
271 PRK11524 putative methyltransf 95.9 0.032 7E-07 45.6 6.9 57 43-107 195-252 (284)
272 COG1063 Tdh Threonine dehydrog 95.9 0.03 6.4E-07 47.2 6.8 97 64-182 168-270 (350)
273 PF06962 rRNA_methylase: Putat 95.8 0.064 1.4E-06 39.1 7.3 86 88-186 1-97 (140)
274 PRK09880 L-idonate 5-dehydroge 95.8 0.12 2.6E-06 43.1 10.0 95 63-181 168-266 (343)
275 PF00145 DNA_methylase: C-5 cy 95.7 0.01 2.2E-07 48.9 3.4 70 67-156 2-73 (335)
276 KOG1122 tRNA and rRNA cytosine 95.5 0.16 3.4E-06 43.5 9.8 108 62-182 239-372 (460)
277 KOG2798 Putative trehalase [Ca 95.5 0.11 2.3E-06 42.9 8.2 117 64-182 150-297 (369)
278 PRK13699 putative methylase; P 95.4 0.069 1.5E-06 42.3 7.0 45 64-108 163-208 (227)
279 PF07757 AdoMet_MTase: Predict 95.4 0.013 2.9E-07 40.5 2.5 30 65-94 59-88 (112)
280 COG0270 Dcm Site-specific DNA 95.3 0.039 8.5E-07 46.1 5.5 75 65-156 3-79 (328)
281 PF04989 CmcI: Cephalosporin h 95.1 0.33 7.2E-06 37.7 9.6 105 64-182 32-148 (206)
282 PF03141 Methyltransf_29: Puta 95.1 0.034 7.4E-07 48.5 4.6 96 66-182 367-468 (506)
283 PRK15001 SAM-dependent 23S rib 95.1 0.69 1.5E-05 39.5 12.4 136 19-186 7-147 (378)
284 COG0286 HsdM Type I restrictio 94.7 0.45 9.8E-06 42.0 10.8 108 64-182 186-327 (489)
285 PLN02668 indole-3-acetate carb 94.7 0.6 1.3E-05 39.9 11.0 24 162-185 218-241 (386)
286 cd08230 glucose_DH Glucose deh 94.5 0.46 1E-05 39.7 10.1 92 63-181 171-269 (355)
287 KOG1596 Fibrillarin and relate 94.5 0.55 1.2E-05 37.5 9.6 129 32-184 127-264 (317)
288 KOG1253 tRNA methyltransferase 94.5 0.031 6.8E-07 48.5 2.9 104 64-182 109-217 (525)
289 PF03492 Methyltransf_7: SAM d 94.5 0.64 1.4E-05 39.0 10.6 32 64-95 16-65 (334)
290 PF10237 N6-adenineMlase: Prob 94.4 0.39 8.5E-06 35.9 8.3 116 41-186 11-128 (162)
291 TIGR00675 dcm DNA-methyltransf 94.3 0.048 1E-06 45.3 3.6 38 68-105 1-40 (315)
292 KOG2352 Predicted spermine/spe 94.3 0.17 3.6E-06 44.1 6.8 98 67-181 51-161 (482)
293 TIGR01202 bchC 2-desacetyl-2-h 94.1 0.32 6.9E-06 40.0 8.1 84 64-181 144-231 (308)
294 TIGR00006 S-adenosyl-methyltra 94.0 0.27 5.8E-06 40.7 7.3 45 63-107 19-66 (305)
295 KOG1331 Predicted methyltransf 93.9 0.052 1.1E-06 44.0 2.8 96 64-182 45-144 (293)
296 PF07091 FmrO: Ribosomal RNA m 93.8 0.28 6.2E-06 39.2 6.8 105 65-188 106-215 (251)
297 KOG4058 Uncharacterized conser 93.8 0.28 6E-06 36.2 6.2 45 66-110 74-120 (199)
298 COG2961 ComJ Protein involved 93.6 1.4 3.1E-05 35.3 10.3 130 37-188 66-202 (279)
299 TIGR00561 pntA NAD(P) transhyd 93.6 0.99 2.2E-05 40.0 10.5 99 62-179 161-282 (511)
300 KOG3924 Putative protein methy 93.4 0.32 6.9E-06 41.3 6.8 120 62-185 190-312 (419)
301 cd08283 FDH_like_1 Glutathione 93.4 0.23 5E-06 42.2 6.1 42 62-103 182-227 (386)
302 cd08237 ribitol-5-phosphate_DH 93.1 0.78 1.7E-05 38.3 8.8 90 63-181 162-256 (341)
303 PRK05786 fabG 3-ketoacyl-(acyl 93.1 1.7 3.8E-05 33.7 10.4 77 64-155 4-92 (238)
304 PRK05708 2-dehydropantoate 2-r 93.0 0.57 1.2E-05 38.7 7.8 98 66-180 3-103 (305)
305 PF07279 DUF1442: Protein of u 92.9 2.9 6.3E-05 32.7 10.9 112 65-195 42-162 (218)
306 PRK10458 DNA cytosine methylas 92.8 0.34 7.4E-06 42.5 6.3 41 65-105 88-130 (467)
307 PF03686 UPF0146: Uncharacteri 92.7 0.38 8.3E-06 34.3 5.4 43 44-96 3-47 (127)
308 PF11599 AviRa: RRNA methyltra 92.7 0.24 5.3E-06 38.7 4.7 121 66-187 53-220 (246)
309 TIGR00027 mthyl_TIGR00027 meth 92.6 0.51 1.1E-05 38.1 6.8 110 66-184 83-200 (260)
310 TIGR03366 HpnZ_proposed putati 92.5 1.4 3.1E-05 35.6 9.4 94 64-181 120-218 (280)
311 TIGR03451 mycoS_dep_FDH mycoth 92.4 0.48 1.1E-05 39.7 6.8 98 63-181 175-276 (358)
312 KOG1201 Hydroxysteroid 17-beta 92.4 1.3 2.8E-05 36.4 8.7 81 60-154 33-124 (300)
313 KOG2198 tRNA cytosine-5-methyl 91.7 2.4 5.2E-05 35.9 9.7 109 61-182 152-297 (375)
314 TIGR02822 adh_fam_2 zinc-bindi 91.6 1.8 3.8E-05 36.0 9.2 89 62-181 163-254 (329)
315 COG1748 LYS9 Saccharopine dehy 91.4 0.83 1.8E-05 39.1 7.0 74 66-155 2-79 (389)
316 cd08254 hydroxyacyl_CoA_DH 6-h 91.3 0.53 1.1E-05 38.7 5.7 96 63-180 164-262 (338)
317 PRK12548 shikimate 5-dehydroge 91.3 1.5 3.3E-05 35.9 8.3 32 62-94 123-158 (289)
318 PF00107 ADH_zinc_N: Zinc-bind 91.2 0.42 9.2E-06 33.6 4.4 85 74-184 1-92 (130)
319 cd05188 MDR Medium chain reduc 91.0 1.7 3.6E-05 34.2 8.2 94 63-182 133-233 (271)
320 cd08239 THR_DH_like L-threonin 90.7 2 4.4E-05 35.5 8.7 39 63-101 162-204 (339)
321 PF03269 DUF268: Caenorhabditi 90.7 0.82 1.8E-05 34.2 5.4 102 65-187 2-117 (177)
322 KOG2651 rRNA adenine N-6-methy 90.6 0.6 1.3E-05 39.7 5.2 31 66-96 155-186 (476)
323 PLN02586 probable cinnamyl alc 90.6 1.9 4.1E-05 36.3 8.5 31 64-94 183-215 (360)
324 KOG1099 SAM-dependent methyltr 90.4 0.59 1.3E-05 37.0 4.8 36 62-97 38-85 (294)
325 PF02086 MethyltransfD12: D12 90.4 0.51 1.1E-05 37.6 4.7 48 45-99 8-56 (260)
326 cd08281 liver_ADH_like1 Zinc-d 90.3 0.6 1.3E-05 39.4 5.2 96 63-181 190-290 (371)
327 PF02737 3HCDH_N: 3-hydroxyacy 90.2 0.85 1.8E-05 34.6 5.5 103 67-178 1-111 (180)
328 COG1893 ApbA Ketopantoate redu 90.1 4.3 9.3E-05 33.6 9.9 98 67-181 2-101 (307)
329 PRK06124 gluconate 5-dehydroge 89.5 8.8 0.00019 30.1 11.5 80 61-154 7-98 (256)
330 TIGR00518 alaDH alanine dehydr 89.5 1 2.2E-05 38.4 5.9 38 63-100 165-205 (370)
331 PF06859 Bin3: Bicoid-interact 89.4 0.13 2.8E-06 35.8 0.4 39 144-182 1-45 (110)
332 KOG3115 Methyltransferase-like 89.3 0.43 9.2E-06 37.1 3.1 113 66-183 62-185 (249)
333 KOG2912 Predicted DNA methylas 88.9 0.54 1.2E-05 39.0 3.6 76 69-157 107-191 (419)
334 cd08232 idonate-5-DH L-idonate 88.8 7.3 0.00016 32.0 10.6 93 64-180 165-261 (339)
335 PRK11524 putative methyltransf 88.7 0.47 1E-05 38.8 3.3 42 142-183 25-82 (284)
336 PLN03154 putative allyl alcoho 88.5 1.4 3.1E-05 36.9 6.2 94 62-180 156-257 (348)
337 COG1565 Uncharacterized conser 88.2 2 4.4E-05 36.3 6.6 59 42-104 59-127 (370)
338 COG3392 Adenine-specific DNA m 88.1 0.6 1.3E-05 37.7 3.4 37 60-96 23-59 (330)
339 COG1255 Uncharacterized protei 88.0 1.3 2.8E-05 31.2 4.5 77 66-172 15-92 (129)
340 PRK08293 3-hydroxybutyryl-CoA 88.0 6.8 0.00015 31.9 9.7 41 66-106 4-47 (287)
341 PRK07326 short chain dehydroge 87.9 5.7 0.00012 30.7 9.0 76 64-154 5-92 (237)
342 PRK06139 short chain dehydroge 87.9 1.9 4.1E-05 36.0 6.5 78 63-153 5-93 (330)
343 PRK06522 2-dehydropantoate 2-r 87.9 7.4 0.00016 31.6 9.9 95 67-180 2-99 (304)
344 PLN02178 cinnamyl-alcohol dehy 87.7 3.3 7.1E-05 35.2 7.9 31 64-94 178-210 (375)
345 PLN02740 Alcohol dehydrogenase 87.7 1.7 3.7E-05 36.8 6.2 41 62-102 196-240 (381)
346 PF10354 DUF2431: Domain of un 87.2 6.6 0.00014 29.4 8.5 45 142-186 73-130 (166)
347 PRK10309 galactitol-1-phosphat 87.2 1.8 4E-05 35.9 6.1 39 63-101 159-201 (347)
348 cd08285 NADP_ADH NADP(H)-depen 87.0 2.5 5.4E-05 35.1 6.8 93 62-180 164-265 (351)
349 PRK07819 3-hydroxybutyryl-CoA 87.0 2.8 6.2E-05 34.2 6.9 103 66-177 6-117 (286)
350 PLN02514 cinnamyl-alcohol dehy 86.9 4.7 0.0001 33.8 8.4 33 64-96 180-215 (357)
351 PRK08265 short chain dehydroge 86.7 7.4 0.00016 30.9 9.1 76 63-154 4-90 (261)
352 PRK05867 short chain dehydroge 86.7 3.3 7.1E-05 32.6 7.0 80 62-154 6-96 (253)
353 PF05206 TRM13: Methyltransfer 86.3 1.9 4.2E-05 34.8 5.5 31 64-94 18-55 (259)
354 PRK07109 short chain dehydroge 86.3 12 0.00025 31.2 10.3 80 62-154 5-95 (334)
355 PRK06701 short chain dehydroge 86.2 8.2 0.00018 31.3 9.3 79 62-153 43-133 (290)
356 PRK06249 2-dehydropantoate 2-r 86.2 4.8 0.00011 33.2 8.0 99 65-180 5-105 (313)
357 PRK08324 short chain dehydroge 85.9 6.5 0.00014 36.2 9.4 78 62-154 419-508 (681)
358 PRK08213 gluconate 5-dehydroge 85.9 4.7 0.0001 31.8 7.5 79 62-154 9-99 (259)
359 PRK07063 short chain dehydroge 85.8 3.4 7.4E-05 32.7 6.7 81 62-153 4-95 (260)
360 PRK05854 short chain dehydroge 85.7 5.5 0.00012 32.8 8.1 83 61-154 10-103 (313)
361 PRK06949 short chain dehydroge 85.6 3.6 7.8E-05 32.3 6.7 79 62-154 6-96 (258)
362 PRK08339 short chain dehydroge 85.2 3.6 7.8E-05 32.8 6.6 79 62-152 5-93 (263)
363 PF02558 ApbA: Ketopantoate re 85.1 4.4 9.5E-05 29.3 6.5 99 68-181 1-101 (151)
364 PRK12826 3-ketoacyl-(acyl-carr 85.1 3.2 6.9E-05 32.4 6.2 80 63-156 4-95 (251)
365 COG3315 O-Methyltransferase in 84.7 3.1 6.6E-05 34.4 6.0 108 66-182 94-210 (297)
366 PRK07523 gluconate 5-dehydroge 84.6 5.3 0.00011 31.4 7.3 79 62-154 7-97 (255)
367 cd05278 FDH_like Formaldehyde 84.6 3 6.5E-05 34.4 6.1 96 64-180 167-266 (347)
368 PRK07066 3-hydroxybutyryl-CoA 84.4 4.7 0.0001 33.7 7.1 102 66-175 8-113 (321)
369 PF06460 NSP13: Coronavirus NS 84.4 4.8 0.0001 32.5 6.7 108 44-186 47-174 (299)
370 PRK05876 short chain dehydroge 84.4 4.8 0.0001 32.4 7.0 79 63-154 4-93 (275)
371 TIGR02437 FadB fatty oxidation 84.2 3.7 8E-05 38.1 6.9 103 66-177 314-424 (714)
372 PRK08862 short chain dehydroge 84.2 4.8 0.0001 31.5 6.8 77 63-152 3-91 (227)
373 PF02636 Methyltransf_28: Puta 84.1 3.9 8.5E-05 32.7 6.3 41 66-106 20-71 (252)
374 PRK07530 3-hydroxybutyryl-CoA 83.9 4.6 0.0001 32.9 6.8 103 66-178 5-116 (292)
375 PRK08267 short chain dehydroge 83.9 9.8 0.00021 30.0 8.6 73 66-154 2-87 (260)
376 PRK07097 gluconate 5-dehydroge 83.7 4.3 9.3E-05 32.2 6.4 80 62-154 7-97 (265)
377 PRK07806 short chain dehydroge 83.7 19 0.00041 28.0 10.1 104 63-180 4-133 (248)
378 PRK07062 short chain dehydroge 83.6 7.7 0.00017 30.7 7.9 82 62-154 5-97 (265)
379 COG4798 Predicted methyltransf 83.4 5.7 0.00012 30.9 6.4 105 62-186 46-171 (238)
380 PRK05866 short chain dehydroge 83.2 4.8 0.0001 32.8 6.6 79 62-154 37-127 (293)
381 PRK07814 short chain dehydroge 83.2 20 0.00044 28.3 10.2 77 62-152 7-95 (263)
382 TIGR01963 PHB_DH 3-hydroxybuty 83.1 5.7 0.00012 31.0 6.9 75 66-154 2-88 (255)
383 PRK06718 precorrin-2 dehydroge 83.1 14 0.00031 28.5 8.8 33 62-94 7-41 (202)
384 PRK06172 short chain dehydroge 82.8 3.3 7.1E-05 32.5 5.4 79 63-154 5-94 (253)
385 TIGR02825 B4_12hDH leukotriene 82.6 7.7 0.00017 31.8 7.7 96 62-180 136-236 (325)
386 PRK11730 fadB multifunctional 82.5 4.8 0.0001 37.4 6.9 103 66-177 314-424 (715)
387 TIGR02819 fdhA_non_GSH formald 82.4 13 0.00029 31.7 9.2 40 63-102 184-227 (393)
388 PRK09242 tropinone reductase; 82.3 8.6 0.00019 30.3 7.6 81 62-153 6-97 (257)
389 PRK07035 short chain dehydroge 82.2 7.8 0.00017 30.4 7.3 79 62-153 5-94 (252)
390 PRK08085 gluconate 5-dehydroge 82.1 5.9 0.00013 31.1 6.6 79 63-154 7-96 (254)
391 cd08293 PTGR2 Prostaglandin re 82.0 3.6 7.7E-05 34.0 5.5 37 66-102 156-197 (345)
392 cd01080 NAD_bind_m-THF_DH_Cycl 82.0 3.5 7.7E-05 31.0 4.9 34 61-94 40-76 (168)
393 PRK06194 hypothetical protein; 82.0 4.2 9.1E-05 32.7 5.8 78 63-154 4-93 (287)
394 cd08255 2-desacetyl-2-hydroxye 81.9 12 0.00026 29.7 8.5 91 62-180 95-189 (277)
395 PRK05565 fabG 3-ketoacyl-(acyl 81.9 16 0.00036 28.2 9.1 78 63-154 3-93 (247)
396 PRK06935 2-deoxy-D-gluconate 3 81.7 6.4 0.00014 31.1 6.7 79 62-153 12-100 (258)
397 PRK06181 short chain dehydroge 81.6 14 0.0003 29.1 8.7 75 66-154 2-88 (263)
398 PRK06125 short chain dehydroge 81.6 8.7 0.00019 30.3 7.5 79 63-154 5-91 (259)
399 PRK05872 short chain dehydroge 81.5 5.1 0.00011 32.6 6.2 80 61-154 5-95 (296)
400 PRK07478 short chain dehydroge 81.4 5.5 0.00012 31.3 6.2 79 63-154 4-93 (254)
401 PRK07774 short chain dehydroge 81.4 6.7 0.00015 30.6 6.7 78 63-154 4-93 (250)
402 KOG3350 Uncharacterized conser 81.3 3.1 6.7E-05 31.7 4.3 61 126-186 116-177 (217)
403 PF01488 Shikimate_DH: Shikima 81.3 5.7 0.00012 28.5 5.7 77 61-157 8-88 (135)
404 COG0541 Ffh Signal recognition 81.2 9.2 0.0002 33.2 7.6 105 67-187 102-227 (451)
405 KOG0725 Reductases with broad 81.1 28 0.0006 28.2 11.0 84 61-154 4-99 (270)
406 KOG1098 Putative SAM-dependent 81.0 1.2 2.6E-05 40.2 2.3 33 62-94 42-77 (780)
407 PRK12921 2-dehydropantoate 2-r 81.0 10 0.00022 30.9 7.8 98 67-180 2-101 (305)
408 cd01492 Aos1_SUMO Ubiquitin ac 81.0 13 0.00027 28.7 7.8 33 63-95 19-54 (197)
409 PRK07666 fabG 3-ketoacyl-(acyl 81.0 6.4 0.00014 30.6 6.4 77 63-153 5-93 (239)
410 PRK07890 short chain dehydroge 81.0 7.8 0.00017 30.4 6.9 78 64-154 4-92 (258)
411 PLN03209 translocon at the inn 81.0 8.1 0.00018 34.9 7.6 86 61-151 76-166 (576)
412 cd08233 butanediol_DH_like (2R 80.9 7.6 0.00017 32.2 7.1 98 63-181 171-272 (351)
413 PRK09291 short chain dehydroge 80.8 6.7 0.00015 30.8 6.5 74 65-152 2-81 (257)
414 PRK08589 short chain dehydroge 80.8 12 0.00027 29.8 8.1 79 63-154 4-92 (272)
415 PF04072 LCM: Leucine carboxyl 80.8 1.7 3.8E-05 32.9 3.0 93 66-167 80-182 (183)
416 PF03721 UDPG_MGDP_dh_N: UDP-g 80.8 3 6.4E-05 31.8 4.2 113 67-197 2-136 (185)
417 cd00401 AdoHcyase S-adenosyl-L 80.7 4 8.7E-05 35.3 5.4 88 62-182 199-290 (413)
418 cd05285 sorbitol_DH Sorbitol d 80.7 11 0.00023 31.3 7.9 97 62-180 160-264 (343)
419 COG4301 Uncharacterized conser 80.7 18 0.0004 29.2 8.6 112 64-187 78-199 (321)
420 PRK08703 short chain dehydroge 80.5 12 0.00026 29.0 7.8 42 63-105 4-50 (239)
421 PRK08306 dipicolinate synthase 80.1 20 0.00043 29.5 9.2 37 61-97 148-187 (296)
422 cd08261 Zn_ADH7 Alcohol dehydr 80.0 5.4 0.00012 32.9 5.9 98 62-180 157-257 (337)
423 COG0604 Qor NADPH:quinone redu 79.7 4.2 9.1E-05 33.9 5.2 97 64-182 142-242 (326)
424 TIGR02441 fa_ox_alpha_mit fatt 79.6 4.4 9.6E-05 37.8 5.7 103 66-177 336-446 (737)
425 PRK12429 3-hydroxybutyrate deh 79.4 7.3 0.00016 30.5 6.3 76 64-153 3-90 (258)
426 TIGR01470 cysG_Nterm siroheme 79.4 16 0.00035 28.3 8.0 33 62-94 6-40 (205)
427 PRK12823 benD 1,6-dihydroxycyc 79.4 9.2 0.0002 30.1 6.9 78 62-152 5-92 (260)
428 cd08245 CAD Cinnamyl alcohol d 79.3 19 0.00041 29.4 9.0 92 63-180 161-255 (330)
429 COG0686 Ald Alanine dehydrogen 79.3 8.7 0.00019 32.1 6.6 98 64-180 167-267 (371)
430 PLN02253 xanthoxin dehydrogena 79.0 6.2 0.00014 31.6 5.9 78 61-153 14-103 (280)
431 PRK08277 D-mannonate oxidoredu 78.9 6.9 0.00015 31.2 6.1 78 62-152 7-95 (278)
432 PRK07791 short chain dehydroge 78.9 12 0.00027 30.2 7.6 80 63-155 4-103 (286)
433 PRK06720 hypothetical protein; 78.9 14 0.00029 27.7 7.3 79 63-154 14-103 (169)
434 PF01262 AlaDh_PNT_C: Alanine 78.8 0.45 9.9E-06 35.6 -0.8 40 62-101 17-59 (168)
435 TIGR03206 benzo_BadH 2-hydroxy 78.8 7.3 0.00016 30.4 6.1 76 64-153 2-89 (250)
436 COG0863 DNA modification methy 78.8 10 0.00022 30.8 7.1 47 62-108 220-267 (302)
437 TIGR00853 pts-lac PTS system, 78.7 13 0.00029 25.0 6.5 73 66-176 4-76 (95)
438 PRK07792 fabG 3-ketoacyl-(acyl 78.7 9.7 0.00021 31.2 7.0 81 61-154 8-99 (306)
439 PLN02896 cinnamyl-alcohol dehy 78.5 27 0.00058 29.1 9.7 77 62-153 7-88 (353)
440 PRK11154 fadJ multifunctional 78.5 7.7 0.00017 36.0 6.9 103 66-177 310-421 (708)
441 PLN02545 3-hydroxybutyryl-CoA 78.3 9.3 0.0002 31.2 6.7 41 66-106 5-48 (295)
442 cd01078 NAD_bind_H4MPT_DH NADP 78.2 14 0.00029 28.1 7.3 33 62-94 25-60 (194)
443 cd00755 YgdL_like Family of ac 78.1 16 0.00034 29.0 7.7 33 63-95 9-44 (231)
444 PRK06113 7-alpha-hydroxysteroi 78.0 15 0.00032 28.9 7.7 80 62-154 8-98 (255)
445 PLN02662 cinnamyl-alcohol dehy 78.0 11 0.00023 30.8 7.1 76 64-151 3-83 (322)
446 cd08242 MDR_like Medium chain 77.9 27 0.00058 28.4 9.4 87 63-179 154-243 (319)
447 PF04378 RsmJ: Ribosomal RNA s 77.7 4.6 0.0001 32.4 4.6 113 71-197 62-180 (245)
448 PF05050 Methyltransf_21: Meth 77.6 6.2 0.00013 28.6 5.1 39 70-108 1-48 (167)
449 PRK06940 short chain dehydroge 77.5 29 0.00063 27.8 9.4 76 65-155 2-87 (275)
450 COG1062 AdhC Zn-dependent alco 77.3 5 0.00011 33.8 4.7 41 63-103 184-228 (366)
451 PRK06138 short chain dehydroge 77.0 7.7 0.00017 30.3 5.8 77 63-154 3-91 (252)
452 PRK08217 fabG 3-ketoacyl-(acyl 77.0 14 0.0003 28.7 7.2 77 63-153 3-91 (253)
453 cd08295 double_bond_reductase_ 76.8 9.1 0.0002 31.6 6.4 41 62-102 149-193 (338)
454 PRK07533 enoyl-(acyl carrier p 76.7 15 0.00032 29.1 7.4 33 62-94 7-44 (258)
455 COG2933 Predicted SAM-dependen 76.7 22 0.00049 29.0 8.1 57 40-96 187-243 (358)
456 PRK08229 2-dehydropantoate 2-r 76.6 30 0.00065 28.7 9.4 98 66-178 3-104 (341)
457 cd08296 CAD_like Cinnamyl alco 76.6 18 0.00038 29.8 8.0 39 63-101 162-203 (333)
458 PRK12939 short chain dehydroge 76.6 14 0.0003 28.7 7.1 77 62-152 4-92 (250)
459 cd08294 leukotriene_B4_DH_like 76.4 6.3 0.00014 32.2 5.3 95 63-180 142-240 (329)
460 PRK06128 oxidoreductase; Provi 76.4 39 0.00083 27.4 9.9 79 62-154 52-144 (300)
461 TIGR01832 kduD 2-deoxy-D-gluco 76.3 17 0.00036 28.3 7.5 77 63-154 3-90 (248)
462 cd01075 NAD_bind_Leu_Phe_Val_D 76.3 10 0.00022 29.2 6.1 40 61-102 24-68 (200)
463 PRK13699 putative methylase; P 76.1 6.3 0.00014 31.1 4.9 43 142-184 18-75 (227)
464 PRK07831 short chain dehydroge 76.0 15 0.00032 29.1 7.2 82 62-154 14-107 (262)
465 PRK06500 short chain dehydroge 76.0 30 0.00065 26.8 8.9 32 63-94 4-38 (249)
466 PRK07904 short chain dehydroge 75.9 12 0.00025 29.7 6.5 76 64-152 7-95 (253)
467 PF02254 TrkA_N: TrkA-N domain 75.8 19 0.00041 24.5 6.9 90 73-184 4-99 (116)
468 PRK07231 fabG 3-ketoacyl-(acyl 75.8 12 0.00026 29.1 6.6 78 63-154 3-91 (251)
469 TIGR03201 dearomat_had 6-hydro 75.7 13 0.00028 31.0 7.0 41 62-102 164-207 (349)
470 PRK08945 putative oxoacyl-(acy 75.7 17 0.00038 28.3 7.5 44 61-105 8-56 (247)
471 PRK09186 flagellin modificatio 75.4 9.9 0.00021 29.8 6.0 77 64-152 3-91 (256)
472 TIGR03693 ocin_ThiF_like putat 75.2 43 0.00093 30.7 10.3 34 62-95 126-162 (637)
473 PRK12937 short chain dehydroge 75.0 36 0.00078 26.2 9.4 78 63-154 3-93 (245)
474 PRK08269 3-hydroxybutyryl-CoA 75.0 8.9 0.00019 31.8 5.8 93 79-177 6-111 (314)
475 PRK09590 celB cellobiose phosp 74.9 12 0.00027 25.7 5.6 84 67-186 3-86 (104)
476 COG4627 Uncharacterized protei 74.8 0.75 1.6E-05 34.2 -0.6 43 141-183 44-88 (185)
477 cd08234 threonine_DH_like L-th 74.7 8.5 0.00018 31.5 5.7 92 63-180 158-256 (334)
478 PRK14106 murD UDP-N-acetylmura 74.5 17 0.00037 31.5 7.7 30 63-94 3-36 (450)
479 PRK07576 short chain dehydroge 74.3 18 0.00039 28.7 7.3 76 63-152 7-94 (264)
480 PRK07102 short chain dehydroge 74.3 15 0.00032 28.6 6.7 74 66-152 2-84 (243)
481 PLN02989 cinnamyl-alcohol dehy 74.2 15 0.00032 30.1 7.0 77 64-152 4-85 (325)
482 PRK08303 short chain dehydroge 74.2 20 0.00044 29.4 7.7 33 62-94 5-40 (305)
483 PRK12481 2-deoxy-D-gluconate 3 74.2 16 0.00035 28.7 7.0 78 63-154 6-93 (251)
484 PRK08643 acetoin reductase; Va 74.2 18 0.00038 28.4 7.2 76 65-154 2-89 (256)
485 cd08265 Zn_ADH3 Alcohol dehydr 73.8 21 0.00045 30.2 7.9 34 63-96 202-239 (384)
486 PF01795 Methyltransf_5: MraW 73.7 3 6.6E-05 34.6 2.6 43 64-106 20-65 (310)
487 COG1250 FadB 3-hydroxyacyl-CoA 73.6 13 0.00028 30.9 6.3 43 66-108 4-49 (307)
488 TIGR02818 adh_III_F_hyde S-(hy 73.6 7.7 0.00017 32.6 5.2 40 63-102 184-227 (368)
489 PRK06197 short chain dehydroge 73.5 13 0.00028 30.2 6.4 81 62-154 13-105 (306)
490 PRK07417 arogenate dehydrogena 73.3 19 0.00042 29.1 7.3 35 67-101 2-39 (279)
491 cd05564 PTS_IIB_chitobiose_lic 73.0 15 0.00032 24.8 5.5 51 125-184 30-80 (96)
492 PRK05875 short chain dehydroge 73.0 13 0.00029 29.5 6.2 78 63-152 5-94 (276)
493 KOG1209 1-Acyl dihydroxyaceton 72.9 18 0.0004 28.6 6.6 38 64-101 6-49 (289)
494 TIGR00692 tdh L-threonine 3-de 72.8 12 0.00027 30.8 6.2 33 143-181 229-261 (340)
495 PRK08340 glucose-1-dehydrogena 72.4 12 0.00025 29.6 5.7 72 67-152 2-84 (259)
496 PRK08251 short chain dehydroge 72.4 24 0.00051 27.5 7.5 76 65-152 2-89 (248)
497 TIGR02354 thiF_fam2 thiamine b 72.4 42 0.00092 25.8 8.9 34 62-95 18-54 (200)
498 PRK15116 sulfur acceptor prote 72.2 33 0.00072 27.9 8.3 34 62-95 27-63 (268)
499 PRK05650 short chain dehydroge 72.1 12 0.00025 29.8 5.7 74 67-154 2-87 (270)
500 PRK12829 short chain dehydroge 71.9 11 0.00025 29.5 5.6 77 62-154 8-96 (264)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.97 E-value=5.2e-31 Score=200.04 Aligned_cols=165 Identities=38% Similarity=0.608 Sum_probs=101.3
Q ss_pred CeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcCcch
Q 028673 20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEV 97 (205)
Q Consensus 20 ~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~ 97 (205)
+..+.|++.. ..++|..+|+++.+|++||..+.... +....+++++|||||||+|++|+++++. +++|++||++++
T Consensus 3 ~~~l~i~e~~-~~~~G~~vW~aa~~La~~l~~~~~~~-~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~ 80 (173)
T PF10294_consen 3 NKTLQIEEDW-GDGTGGKVWPAALVLARYLLSHSESE-FNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEV 80 (173)
T ss_dssp ---------------------HHHHHHHHHHH--------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-H
T ss_pred cccccccccc-ccCCcEEEechHHHHHHHHHHhcccc-cchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchh
Confidence 4567788777 45899999999999999999853111 1145778999999999999999999999 567999999669
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcE
Q 028673 98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT 176 (205)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~ 176 (205)
++.++.|++.|+. ....++.+..++|++..... ....+||+|+++||+|+.+.+++|++++.+++++++.
T Consensus 81 l~~l~~Ni~~N~~---------~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 81 LELLRRNIELNGS---------LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK 151 (173)
T ss_dssp HHHHHHHHHTT-----------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT
T ss_pred hHHHHHHHHhccc---------cccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE
Confidence 9999999999963 12467999999999853211 2245899999999999999999999999999999999
Q ss_pred EEEEEeeccchhHHHHHHhh
Q 028673 177 ILVMFSLSMFSLTFFCWTRI 196 (205)
Q Consensus 177 ~~i~~~~r~~~~~~~~~~~~ 196 (205)
++++++.|...... +++++
T Consensus 152 vl~~~~~R~~~~~~-F~~~~ 170 (173)
T PF10294_consen 152 VLLAYKRRRKSEQE-FFDRL 170 (173)
T ss_dssp EEEEEE-S-TGGCH-HHHHH
T ss_pred EEEEeCEecHHHHH-HHHHh
Confidence 99999999765543 33444
No 2
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.82 E-value=2.1e-19 Score=136.05 Aligned_cols=137 Identities=25% Similarity=0.339 Sum_probs=107.3
Q ss_pred EEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE--EEEEcC-cchH
Q 028673 22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVL 98 (205)
Q Consensus 22 ~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~--v~~~D~-~~~l 98 (205)
++++.+.++.+..+ .+-.++.+|++++... ++++|||+|||+|.+|+.+++.+.. |+++|+ +.++
T Consensus 1 ~~~~~~~~gvFs~~-~~d~~t~lL~~~l~~~-----------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~ 68 (170)
T PF05175_consen 1 ELEFITHPGVFSPP-RLDAGTRLLLDNLPKH-----------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL 68 (170)
T ss_dssp EEEEEEETTSTTTT-SHHHHHHHHHHHHHHH-----------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH
T ss_pred CEEEEECCCeeCCC-CCCHHHHHHHHHHhhc-----------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH
Confidence 46788888766533 4456788999999875 5789999999999999999998765 999999 7899
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc-----ChHhHHHHHHHhhCC
Q 028673 99 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGP 173 (205)
Q Consensus 99 ~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~~ 173 (205)
+.+++|++.|+. .++++...|+.+.. ...+||+|++|++++... ....+++...++|+|
T Consensus 69 ~~a~~n~~~n~~------------~~v~~~~~d~~~~~----~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~ 132 (170)
T PF05175_consen 69 ELAKRNAERNGL------------ENVEVVQSDLFEAL----PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKP 132 (170)
T ss_dssp HHHHHHHHHTTC------------TTEEEEESSTTTTC----CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHhcCc------------cccccccccccccc----cccceeEEEEccchhcccccchhhHHHHHHHHHHhccC
Confidence 999999999964 22777776665432 257999999999977644 367889999999999
Q ss_pred CcEEEEEEeeccc
Q 028673 174 KTTILVMFSLSMF 186 (205)
Q Consensus 174 ~g~~~i~~~~r~~ 186 (205)
||.++++......
T Consensus 133 ~G~l~lv~~~~~~ 145 (170)
T PF05175_consen 133 GGRLFLVINSHLG 145 (170)
T ss_dssp EEEEEEEEETTSC
T ss_pred CCEEEEEeecCCC
Confidence 9999998875443
No 3
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.82 E-value=1.2e-19 Score=143.02 Aligned_cols=140 Identities=24% Similarity=0.289 Sum_probs=117.6
Q ss_pred EcCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C-CEEEEEcC-
Q 028673 18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ- 94 (205)
Q Consensus 18 ~~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g-~~v~~~D~- 94 (205)
+.+..+.|.|.+.+...|.. +++|++|.... ..++|||||||+|++|+++|++ . ++++++|+
T Consensus 13 ~~~~~~~I~q~~~~~~~~~D----aiLL~~~~~~~-----------~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq 77 (248)
T COG4123 13 FTFKQFFIIQDRCGFRYGTD----AILLAAFAPVP-----------KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQ 77 (248)
T ss_pred ccccceEEEeCCCccccccH----HHHHHhhcccc-----------cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeC
Confidence 35778999999999999988 99999999543 3789999999999999999988 3 57999999
Q ss_pred cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc----------------
Q 028673 95 IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---------------- 158 (205)
Q Consensus 95 ~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~---------------- 158 (205)
+++.+.|++|++.|. +.+++++.+.|..+...... ..+||+|++|+++|...
T Consensus 78 ~~~a~~A~~nv~ln~-----------l~~ri~v~~~Di~~~~~~~~-~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~ 145 (248)
T COG4123 78 EEAAEMAQRNVALNP-----------LEERIQVIEADIKEFLKALV-FASFDLIICNPPYFKQGSRLNENPLRAIARHEI 145 (248)
T ss_pred HHHHHHHHHHHHhCc-----------chhceeEehhhHHHhhhccc-ccccCEEEeCCCCCCCccccCcChhhhhhhhhh
Confidence 789999999999995 46899999988776643322 33799999999998732
Q ss_pred --ChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 159 --LLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 159 --~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
.++.+++...+++||+|.++++++.-
T Consensus 146 ~~~le~~i~~a~~~lk~~G~l~~V~r~e 173 (248)
T COG4123 146 TLDLEDLIRAAAKLLKPGGRLAFVHRPE 173 (248)
T ss_pred cCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence 36789999999999999999998743
No 4
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.80 E-value=9.6e-20 Score=136.77 Aligned_cols=158 Identities=22% Similarity=0.349 Sum_probs=124.9
Q ss_pred CCCCCCCccEEEEEEcCeEEEEEeCCC--------CccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCc
Q 028673 4 DRLNSPSTSVINLEVLGHQLQFSQDPN--------SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC 75 (205)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~i~q~~~--------~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGt 75 (205)
..+..|...++.+...+..-...+... ..-++...|.+++.||+|+..+ |+..+|++|||+|+|+
T Consensus 18 ~~~p~p~~Pe~rl~la~~~~~l~~~~~e~l~~ig~pPpfwa~~WagG~~lAR~i~~~-------PetVrgkrVLd~gags 90 (218)
T COG3897 18 GLLPPPHVPEIRLHLADEAHELWDRAKEELRLIGLPPPFWAFAWAGGQVLARYIDDH-------PETVRGKRVLDLGAGS 90 (218)
T ss_pred ccCCCCCCchhheeecccccchHhHhHHHHHhcCCCchHHHHHHhhhHHHHHHHhcC-------ccccccceeeeccccc
Confidence 344555566777766654433333221 2347889999999999999998 8899999999999999
Q ss_pred cHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEccc
Q 028673 76 GVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV 153 (205)
Q Consensus 76 Gl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~ 153 (205)
|+.++++++.|+. |+++|+ +..++.++.|++.|+. .+.+...|... .++.||+|+++|+
T Consensus 91 gLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-------------~i~~~~~d~~g------~~~~~Dl~LagDl 151 (218)
T COG3897 91 GLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-------------SILFTHADLIG------SPPAFDLLLAGDL 151 (218)
T ss_pred ChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-------------eeEEeeccccC------CCcceeEEEeece
Confidence 9999999999997 999999 7788999999999975 45555544332 3568999999999
Q ss_pred ccCCcChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673 154 VYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFS 187 (205)
Q Consensus 154 ~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~ 187 (205)
+|.......++....++...|-.+++..+.|..-
T Consensus 152 fy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 152 FYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred ecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 9999999999997777777777778778877764
No 5
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.8e-20 Score=136.48 Aligned_cols=142 Identities=27% Similarity=0.422 Sum_probs=114.1
Q ss_pred ccccc-ccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCC-ccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHH
Q 028673 33 HLGTT-VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAG-CGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEW 107 (205)
Q Consensus 33 ~~g~~-~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcG-tGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~ 107 (205)
.||.. +||++.+||.++.+. +..++|++|||||.| ||+.|+++|.... .|..||. +++++..++....
T Consensus 4 ntgnvciwpseeala~~~l~~-------~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~ 76 (201)
T KOG3201|consen 4 NTGNVCIWPSEEALAWTILRD-------PNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNS 76 (201)
T ss_pred CCCcEEecccHHHHHHHHHhc-------hhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhc
Confidence 45655 999999999999987 678899999999999 6999999998754 5999999 7788888888777
Q ss_pred hhhhhccCCCCCCCCCceEEEE-eecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 108 NTSRISQMNPGSDLLGSIQAVE-LDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 108 n~~~~~~~~~~~~~~~~i~~~~-~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
|... ....+.+.. ..|+.. ......+||+|+++||+|..+..+.|.++++.+|+|.|..++..|+|..
T Consensus 77 n~~s---------~~tsc~vlrw~~~~aq--sq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 77 NMAS---------SLTSCCVLRWLIWGAQ--SQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ 145 (201)
T ss_pred cccc---------ccceehhhHHHHhhhH--HHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc
Confidence 7431 112232222 222322 2233568999999999999999999999999999999999999999999
Q ss_pred hhHHHH
Q 028673 187 SLTFFC 192 (205)
Q Consensus 187 ~~~~~~ 192 (205)
++..|.
T Consensus 146 sL~kF~ 151 (201)
T KOG3201|consen 146 SLQKFL 151 (201)
T ss_pred hHHHHH
Confidence 998765
No 6
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.78 E-value=7.5e-19 Score=136.60 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=94.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
+.|++|||+|||-|+++..+|+.|++|+++|. +++++.++..+..++. .++.... ..+++...
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv-------------~i~y~~~---~~edl~~~ 121 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGV-------------NIDYRQA---TVEDLASA 121 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccc-------------cccchhh---hHHHHHhc
Confidence 68999999999999999999999999999999 7899999999988865 2233332 22223333
Q ss_pred CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT 189 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~ 189 (205)
.++||+|+|.+++.|..+.+.+++.+.+++||||.++++...|+....
T Consensus 122 ~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~ 169 (243)
T COG2227 122 GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAY 169 (243)
T ss_pred CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHH
Confidence 479999999999999999999999999999999999999999988654
No 7
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.77 E-value=3.1e-18 Score=139.30 Aligned_cols=140 Identities=23% Similarity=0.304 Sum_probs=103.5
Q ss_pred cCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cc
Q 028673 19 LGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IE 96 (205)
Q Consensus 19 ~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~ 96 (205)
...++.|.-+|+ -.+|+-..+.+.+..++|... ..++++|||+|||||+++++++++|++ |+++|+ |.
T Consensus 126 ~~~~~~I~idPg-~AFGTG~H~TT~lcl~~l~~~---------~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~ 195 (295)
T PF06325_consen 126 PPDEIVIEIDPG-MAFGTGHHPTTRLCLELLEKY---------VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPL 195 (295)
T ss_dssp STTSEEEEESTT-SSS-SSHCHHHHHHHHHHHHH---------SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCH
T ss_pred CCCcEEEEECCC-CcccCCCCHHHHHHHHHHHHh---------ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHH
Confidence 455667777884 334444458899999999875 557889999999999999999999995 999999 88
Q ss_pred hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcE
Q 028673 97 VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT 176 (205)
Q Consensus 97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~ 176 (205)
+++.+++|++.|+. ..++.+. .... ....+||+|++| -..+.+..+...+.++++|||.
T Consensus 196 Av~~a~~N~~~N~~-----------~~~~~v~-----~~~~--~~~~~~dlvvAN---I~~~vL~~l~~~~~~~l~~~G~ 254 (295)
T PF06325_consen 196 AVEAARENAELNGV-----------EDRIEVS-----LSED--LVEGKFDLVVAN---ILADVLLELAPDIASLLKPGGY 254 (295)
T ss_dssp HHHHHHHHHHHTT------------TTCEEES-----CTSC--TCCS-EEEEEEE---S-HHHHHHHHHHCHHHEEEEEE
T ss_pred HHHHHHHHHHHcCC-----------CeeEEEE-----Eecc--cccccCCEEEEC---CCHHHHHHHHHHHHHhhCCCCE
Confidence 99999999999976 2344442 1111 123799999998 2234455677778888999999
Q ss_pred EEEEEeeccchhH
Q 028673 177 ILVMFSLSMFSLT 189 (205)
Q Consensus 177 ~~i~~~~r~~~~~ 189 (205)
++++--.......
T Consensus 255 lIlSGIl~~~~~~ 267 (295)
T PF06325_consen 255 LILSGILEEQEDE 267 (295)
T ss_dssp EEEEEEEGGGHHH
T ss_pred EEEccccHHHHHH
Confidence 9999887766544
No 8
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=5e-18 Score=137.11 Aligned_cols=140 Identities=24% Similarity=0.302 Sum_probs=106.2
Q ss_pred eEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchH
Q 028673 21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVL 98 (205)
Q Consensus 21 ~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l 98 (205)
..+.++-+|+ .-+|+-..+.+.+..+++.+. ..++++|||+|||+|+++|++++.|+. |+++|+ |.++
T Consensus 129 ~~~~i~lDPG-lAFGTG~HpTT~lcL~~Le~~---------~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV 198 (300)
T COG2264 129 DELNIELDPG-LAFGTGTHPTTSLCLEALEKL---------LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV 198 (300)
T ss_pred CceEEEEccc-cccCCCCChhHHHHHHHHHHh---------hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHH
Confidence 4677777884 344555558899999999875 458899999999999999999999996 999999 7799
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEE
Q 028673 99 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 178 (205)
Q Consensus 99 ~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~ 178 (205)
+.++.|+++|+.. ..++... ...... ....+||+|++| | -.+.+..|...+..+++|||.++
T Consensus 199 ~aa~eNa~~N~v~-----------~~~~~~~---~~~~~~-~~~~~~DvIVAN--I-LA~vl~~La~~~~~~lkpgg~lI 260 (300)
T COG2264 199 EAARENARLNGVE-----------LLVQAKG---FLLLEV-PENGPFDVIVAN--I-LAEVLVELAPDIKRLLKPGGRLI 260 (300)
T ss_pred HHHHHHHHHcCCc-----------hhhhccc---ccchhh-cccCcccEEEeh--h-hHHHHHHHHHHHHHHcCCCceEE
Confidence 9999999999752 1111111 222111 124699999998 3 33556688889999999999999
Q ss_pred EEEeeccchh
Q 028673 179 VMFSLSMFSL 188 (205)
Q Consensus 179 i~~~~r~~~~ 188 (205)
++--...+..
T Consensus 261 lSGIl~~q~~ 270 (300)
T COG2264 261 LSGILEDQAE 270 (300)
T ss_pred EEeehHhHHH
Confidence 9987666643
No 9
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.76 E-value=1.2e-17 Score=131.67 Aligned_cols=150 Identities=31% Similarity=0.465 Sum_probs=120.5
Q ss_pred CccccccccccHHHHHHHHhhhccCCCCCCCC--C--CCCeEEEeCCCccHHHHHHHH-hCCEEEEEcCcchHHHHHHHH
Q 028673 31 SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSK--L--KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNV 105 (205)
Q Consensus 31 ~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~--~--~~~~VLdlGcGtGl~sl~~a~-~g~~v~~~D~~~~l~~~~~n~ 105 (205)
.......+|+++-.++.++............. + +..+|||||+|||+.|+.+|. .+++|+.+|.+..+..++.|.
T Consensus 49 ~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~ 128 (248)
T KOG2793|consen 49 EQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNR 128 (248)
T ss_pred ccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhh
Confidence 34577899999999999998764321110011 1 245699999999999999998 577899999998888898888
Q ss_pred HHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC-ccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 106 EWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP-FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 106 ~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~-fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
..|.....+ ....+.+..++|++........+. ||+|+++||+|.++.++.++.+++.++..++.++++++.|
T Consensus 129 ~~~~~~l~~------~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 129 DKNNIALNQ------LGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred hhhhhhhhh------cCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 777664432 234799999999998766554455 9999999999999999999999999999899999999999
Q ss_pred cc
Q 028673 185 MF 186 (205)
Q Consensus 185 ~~ 186 (205)
..
T Consensus 203 ~~ 204 (248)
T KOG2793|consen 203 RD 204 (248)
T ss_pred cc
Confidence 85
No 10
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=3.6e-17 Score=131.55 Aligned_cols=142 Identities=20% Similarity=0.273 Sum_probs=108.7
Q ss_pred EEcCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEEcC
Q 028673 17 EVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ 94 (205)
Q Consensus 17 ~~~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~ 94 (205)
...++.++|...|+.++.+ .+..+|.+|++.+.. ...+ +|||||||.|.+|+.+++... +++++|.
T Consensus 123 ~~~~~~~~~~t~pGVFS~~-~lD~GS~lLl~~l~~----------~~~~-~vlDlGCG~Gvlg~~la~~~p~~~vtmvDv 190 (300)
T COG2813 123 YLLGHELTFKTLPGVFSRD-KLDKGSRLLLETLPP----------DLGG-KVLDLGCGYGVLGLVLAKKSPQAKLTLVDV 190 (300)
T ss_pred hhccCceEEEeCCCCCcCC-CcChHHHHHHHhCCc----------cCCC-cEEEeCCCccHHHHHHHHhCCCCeEEEEec
Confidence 3448899999999766655 677788899888844 3344 999999999999999999975 6999999
Q ss_pred -cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcC-----hHhHHHHHH
Q 028673 95 -IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-----LEPLLQTIF 168 (205)
Q Consensus 95 -~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~-----~~~ll~~~~ 168 (205)
..+++.+++|++.|+. .+..+..-+..+ ...++||+||+|++++.-.. ...+++...
T Consensus 191 n~~Av~~ar~Nl~~N~~------------~~~~v~~s~~~~-----~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~ 253 (300)
T COG2813 191 NARAVESARKNLAANGV------------ENTEVWASNLYE-----PVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAA 253 (300)
T ss_pred CHHHHHHHHHhHHHcCC------------CccEEEEecccc-----cccccccEEEeCCCccCCcchhHHHHHHHHHHHH
Confidence 6699999999999965 122222221111 12348999999999997432 347999999
Q ss_pred HhhCCCcEEEEEEeeccchh
Q 028673 169 ALSGPKTTILVMFSLSMFSL 188 (205)
Q Consensus 169 ~~l~~~g~~~i~~~~r~~~~ 188 (205)
++|++||.++|+.. |....
T Consensus 254 ~~L~~gGeL~iVan-~~l~y 272 (300)
T COG2813 254 RHLKPGGELWIVAN-RHLPY 272 (300)
T ss_pred HhhccCCEEEEEEc-CCCCh
Confidence 99999999999998 44433
No 11
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.75 E-value=4.7e-17 Score=136.64 Aligned_cols=148 Identities=14% Similarity=0.144 Sum_probs=111.4
Q ss_pred cEEEEEEcCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEE
Q 028673 12 SVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNV 89 (205)
Q Consensus 12 ~~~~~~~~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g--~~v 89 (205)
..+.+.+.+..+++...++.+.. ..+..++.+|.+++... .+.+|||||||+|.+|+.+++++ ++|
T Consensus 188 ~~~~~~~~~~~~~~~~~~gVFs~-~~LD~GtrllL~~lp~~-----------~~~~VLDLGCGtGvi~i~la~~~P~~~V 255 (378)
T PRK15001 188 QTVSWKLEGTDWTIHNHANVFSR-TGLDIGARFFMQHLPEN-----------LEGEIVDLGCGNGVIGLTLLDKNPQAKV 255 (378)
T ss_pred ceeEEEEcCceEEEEecCCccCC-CCcChHHHHHHHhCCcc-----------cCCeEEEEeccccHHHHHHHHhCCCCEE
Confidence 45667788899999988876554 46778888888888432 24589999999999999999884 579
Q ss_pred EEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc-----ChHhH
Q 028673 90 ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----LLEPL 163 (205)
Q Consensus 90 ~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~-----~~~~l 163 (205)
+++|. +.+++.+++|++.|+.. ...++++...|.... ....+||+|++|++++... ....+
T Consensus 256 ~~vD~S~~Av~~A~~N~~~n~~~---------~~~~v~~~~~D~l~~----~~~~~fDlIlsNPPfh~~~~~~~~ia~~l 322 (378)
T PRK15001 256 VFVDESPMAVASSRLNVETNMPE---------ALDRCEFMINNALSG----VEPFRFNAVLCNPPFHQQHALTDNVAWEM 322 (378)
T ss_pred EEEECCHHHHHHHHHHHHHcCcc---------cCceEEEEEcccccc----CCCCCEEEEEECcCcccCccCCHHHHHHH
Confidence 99999 67999999999988531 112455554333221 1235899999998887542 34578
Q ss_pred HHHHHHhhCCCcEEEEEEeec
Q 028673 164 LQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 164 l~~~~~~l~~~g~~~i~~~~r 184 (205)
++.+.++|+|||.++++....
T Consensus 323 ~~~a~~~LkpGG~L~iV~nr~ 343 (378)
T PRK15001 323 FHHARRCLKINGELYIVANRH 343 (378)
T ss_pred HHHHHHhcccCCEEEEEEecC
Confidence 889999999999999997543
No 12
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.74 E-value=1.4e-17 Score=117.16 Aligned_cols=104 Identities=24% Similarity=0.297 Sum_probs=83.5
Q ss_pred CCCeEEEeCCCccHHHHHHHH--hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
++.+|||||||+|..++.+++ .+++|+++|+ +++++.+++++.... ..+++++...|+ .. ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----------~~~~i~~~~~d~-~~--~~~ 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG-----------LSDRITFVQGDA-EF--DPD 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT-----------TTTTEEEEESCC-HG--GTT
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-----------CCCCeEEEECcc-cc--Ccc
Confidence 468999999999999999999 6889999999 889999999996653 257899999777 11 122
Q ss_pred CCCCccEEEEcc-cccC---CcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 141 VAPPFDYIIGTD-VVYA---EHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 141 ~~~~fD~Ii~~d-~~y~---~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
...+||+|++.. +..+ .+....+++.+.++|+|||++++..
T Consensus 67 ~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 67 FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 345799999998 3321 2345688999999999999999875
No 13
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.71 E-value=1.8e-17 Score=129.97 Aligned_cols=111 Identities=19% Similarity=0.312 Sum_probs=86.5
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEE-EEeecCCCCCccc
Q 028673 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA-VELDWGNEDHIKA 140 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~-~~~dw~~~~~~~~ 140 (205)
+.|++|||+|||+|++|..+|+.|++|+++|. +++++.|++..+.+-. ....+.. ..++-.+.+.
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~----------~~~~~~y~l~~~~~~~E~--- 154 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPV----------LEGAIAYRLEYEDTDVEG--- 154 (282)
T ss_pred cCCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCch----------hccccceeeehhhcchhh---
Confidence 34688999999999999999999999999999 8899999988444321 1111111 1122222222
Q ss_pred CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
..++||.|++++++.|..+++.+++.+.++|+|+|.++++...|..
T Consensus 155 ~~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 155 LTGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred cccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 2346999999999999999999999999999999999999887765
No 14
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.70 E-value=3.4e-16 Score=116.27 Aligned_cols=107 Identities=22% Similarity=0.279 Sum_probs=91.4
Q ss_pred CCCeEEEeCCCccHHHHHHHH-h--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 64 KGKRVIELGAGCGVAGFGMAL-L--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~-~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
++.+|||+|||+|..++.+++ . +++++++|+ +++++.++.+++.++. +++++...|+.+....
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------------~ni~~~~~d~~~l~~~- 69 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------------DNIEFIQGDIEDLPQE- 69 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------------TTEEEEESBTTCGCGC-
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------------cccceEEeehhccccc-
Confidence 578999999999999999994 4 568999999 8899999999988764 4799999888774321
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
. ..+||+|+++.++++......+++.+.++|+++|.+++.....
T Consensus 70 ~-~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~ 113 (152)
T PF13847_consen 70 L-EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNH 113 (152)
T ss_dssp S-STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEH
T ss_pred c-CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECCh
Confidence 1 2799999999999999999999999999999999999998873
No 15
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.70 E-value=9.7e-16 Score=116.88 Aligned_cols=116 Identities=20% Similarity=0.188 Sum_probs=90.8
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCC
Q 028673 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (205)
Q Consensus 42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (205)
+.+|.+++... ++++|||+|||+|.+++.++..+.+|+++|+ +++++.+++|++.++.
T Consensus 8 ~~~l~~~l~~~-----------~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---------- 66 (179)
T TIGR00537 8 SLLLEANLREL-----------KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV---------- 66 (179)
T ss_pred HHHHHHHHHhc-----------CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC----------
Confidence 45666776432 5678999999999999999999889999999 8899999999987743
Q ss_pred CCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcC---------------------hHhHHHHHHHhhCCCcEEEE
Q 028673 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---------------------LEPLLQTIFALSGPKTTILV 179 (205)
Q Consensus 121 ~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~---------------------~~~ll~~~~~~l~~~g~~~i 179 (205)
++++...|+.+.. .++||+|+++++++.... ++.+++.+.++|+|||.+++
T Consensus 67 ---~~~~~~~d~~~~~-----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 67 ---GLDVVMTDLFKGV-----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred ---ceEEEEccccccc-----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 4666666654432 348999999988764321 45688899999999999999
Q ss_pred EEeeccc
Q 028673 180 MFSLSMF 186 (205)
Q Consensus 180 ~~~~r~~ 186 (205)
.......
T Consensus 139 ~~~~~~~ 145 (179)
T TIGR00537 139 IQSSLNG 145 (179)
T ss_pred EEeccCC
Confidence 8765543
No 16
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.69 E-value=1.6e-16 Score=131.12 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=90.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
.++.+|||+|||+|.++..+++.|++|+++|. +++++.++.++..+.. ..++.+...+..+ +...
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~-----------~~~i~~~~~dae~---l~~~ 195 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPV-----------TSTIEYLCTTAEK---LADE 195 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-----------ccceeEEecCHHH---hhhc
Confidence 46789999999999999999999999999999 8899999988665421 2356666644333 2223
Q ss_pred CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
.++||+|++.++++|..+.+.+++.+.++|+|||.++++...|..
T Consensus 196 ~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~ 240 (322)
T PLN02396 196 GRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRTM 240 (322)
T ss_pred cCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCH
Confidence 568999999999999999999999999999999999999876653
No 17
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.67 E-value=1.3e-15 Score=118.03 Aligned_cols=101 Identities=20% Similarity=0.276 Sum_probs=82.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
.+.+|||+|||+|..++.+++.|.+|+++|. +++++.++++++.++. .++++...|+.+.. ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~~----~~ 93 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL------------DNLHTAVVDLNNLT----FD 93 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CcceEEecChhhCC----cC
Confidence 5679999999999999999999999999999 7899999998877643 24666665554332 24
Q ss_pred CCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEE
Q 028673 143 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
++||+|+++.++++. ...+.+++.+.++|+|||.+++.
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 579999999988764 35779999999999999996554
No 18
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.65 E-value=2.2e-15 Score=116.51 Aligned_cols=101 Identities=16% Similarity=0.218 Sum_probs=79.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
.+.+|||+|||+|..++.++++|.+|+++|+ +++++.++++++.++. .+.....+..... ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~-------------~v~~~~~d~~~~~----~~ 92 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL-------------PLRTDAYDINAAA----LN 92 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC-------------CceeEeccchhcc----cc
Confidence 4579999999999999999999999999999 7899999988877643 2444444433221 23
Q ss_pred CCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEE
Q 028673 143 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
++||+|+++.++++. +..+.+++.+.++|+|||.+++..
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 579999999988764 456789999999999999966553
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.65 E-value=9.9e-16 Score=123.16 Aligned_cols=109 Identities=23% Similarity=0.284 Sum_probs=90.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
++.+|||+|||+|..++.+++.|.+|+++|+ +++++.++++++..+. ..++++...+..+... ...
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~-----------~~~v~~~~~d~~~l~~--~~~ 110 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGV-----------SDNMQFIHCAAQDIAQ--HLE 110 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccceEEEEcCHHHHhh--hcC
Confidence 4579999999999999999999999999999 8899999999887643 3467777766554321 124
Q ss_pred CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
++||+|++..++++......+++.+.++|+|||.+++.+..+.
T Consensus 111 ~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 111 TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 6899999999999988889999999999999999998865543
No 20
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.65 E-value=4.3e-15 Score=121.46 Aligned_cols=138 Identities=21% Similarity=0.302 Sum_probs=99.3
Q ss_pred eEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchH
Q 028673 21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVL 98 (205)
Q Consensus 21 ~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l 98 (205)
....+.-+|+ ..+|+..++.+.+..+++... ..++++|||+|||+|.+++.+++.|+ +|+++|+ +.++
T Consensus 126 ~~~~i~ldpg-~aFgtG~h~tt~l~l~~l~~~---------~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al 195 (288)
T TIGR00406 126 DALIIMLDPG-LAFGTGTHPTTSLCLEWLEDL---------DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAV 195 (288)
T ss_pred CcEEEEECCC-CcccCCCCHHHHHHHHHHHhh---------cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHH
Confidence 3455666663 334444557777777777553 33678999999999999999999887 6999999 7899
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEE
Q 028673 99 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 178 (205)
Q Consensus 99 ~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~ 178 (205)
+.+++|+..|+. ..++.+...+ .. .....+||+|+++-. .+.+..++..+.++|+|||.++
T Consensus 196 ~~a~~n~~~n~~-----------~~~~~~~~~~---~~--~~~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG~li 256 (288)
T TIGR00406 196 ESARKNAELNQV-----------SDRLQVKLIY---LE--QPIEGKADVIVANIL---AEVIKELYPQFSRLVKPGGWLI 256 (288)
T ss_pred HHHHHHHHHcCC-----------CcceEEEecc---cc--cccCCCceEEEEecC---HHHHHHHHHHHHHHcCCCcEEE
Confidence 999999998864 2334444322 11 112468999999732 3445688899999999999999
Q ss_pred EEEeeccch
Q 028673 179 VMFSLSMFS 187 (205)
Q Consensus 179 i~~~~r~~~ 187 (205)
++...+...
T Consensus 257 ~sgi~~~~~ 265 (288)
T TIGR00406 257 LSGILETQA 265 (288)
T ss_pred EEeCcHhHH
Confidence 987655443
No 21
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.64 E-value=5.2e-15 Score=123.37 Aligned_cols=134 Identities=13% Similarity=0.110 Sum_probs=98.7
Q ss_pred EEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchH
Q 028673 22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVL 98 (205)
Q Consensus 22 ~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l 98 (205)
.+++...++.+.. ..+..++..|.+.+... ...+|||||||+|.+++.+++++. +|+++|+ +.++
T Consensus 166 ~l~i~~~pgvFs~-~~lD~gt~lLl~~l~~~-----------~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al 233 (342)
T PRK09489 166 GLTVKTLPGVFSR-DGLDVGSQLLLSTLTPH-----------TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAAL 233 (342)
T ss_pred CEEEEeCCCCCCC-CCCCHHHHHHHHhcccc-----------CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 4667777765443 34556677777776432 234799999999999999998854 7999999 7799
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC-----cChHhHHHHHHHhhCC
Q 028673 99 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-----HLLEPLLQTIFALSGP 173 (205)
Q Consensus 99 ~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~-----~~~~~ll~~~~~~l~~ 173 (205)
+.++.|++.|+. ..++...|... ...++||+|+++++++.. ...+.+++.+.++|+|
T Consensus 234 ~~A~~nl~~n~l-------------~~~~~~~D~~~-----~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp 295 (342)
T PRK09489 234 ESSRATLAANGL-------------EGEVFASNVFS-----DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNS 295 (342)
T ss_pred HHHHHHHHHcCC-------------CCEEEEccccc-----ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCc
Confidence 999999999854 12333322221 124689999999987652 3457899999999999
Q ss_pred CcEEEEEEeecc
Q 028673 174 KTTILVMFSLSM 185 (205)
Q Consensus 174 ~g~~~i~~~~r~ 185 (205)
||.++++.....
T Consensus 296 gG~L~iVan~~l 307 (342)
T PRK09489 296 GGELRIVANAFL 307 (342)
T ss_pred CCEEEEEEeCCC
Confidence 999999987443
No 22
>PRK14967 putative methyltransferase; Provisional
Probab=99.64 E-value=8.5e-15 Score=115.52 Aligned_cols=133 Identities=19% Similarity=0.239 Sum_probs=96.2
Q ss_pred EEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHH
Q 028673 23 LQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL 100 (205)
Q Consensus 23 ~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~ 100 (205)
+.+.+.++.+.... .+..+++++... ...++.+|||+|||+|.+++.+++.++ +|+++|+ +++++.
T Consensus 7 ~~~~~~~g~~~p~~----ds~~l~~~l~~~--------~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~ 74 (223)
T PRK14967 7 DALLRAPGVYRPQE----DTQLLADALAAE--------GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRS 74 (223)
T ss_pred ceeecCCCCcCCCC----cHHHHHHHHHhc--------ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence 34455554333332 367788887653 233567999999999999999998876 7999999 789999
Q ss_pred HHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcC---------------------
Q 028673 101 LKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------- 159 (205)
Q Consensus 101 ~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~--------------------- 159 (205)
+++|+..++. ++.+...|+.+.. ...+||+|+++.+++....
T Consensus 75 a~~n~~~~~~-------------~~~~~~~d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (223)
T PRK14967 75 ARLNALLAGV-------------DVDVRRGDWARAV----EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAV 137 (223)
T ss_pred HHHHHHHhCC-------------eeEEEECchhhhc----cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHH
Confidence 9999988743 3566666654421 2468999999877553221
Q ss_pred hHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 160 LEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 160 ~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
++.+++.+.++|++||.+++.....
T Consensus 138 ~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 138 LDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEecc
Confidence 4567888899999999999876544
No 23
>PLN02244 tocopherol O-methyltransferase
Probab=99.63 E-value=8.8e-15 Score=122.25 Aligned_cols=106 Identities=15% Similarity=0.089 Sum_probs=89.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 63 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
.++.+|||+|||+|..+..+++. +++|+++|+ +.+++.++++++.++. .+++++...|..+. +.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----------~~~v~~~~~D~~~~---~~ 182 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----------SDKVSFQVADALNQ---PF 182 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEcCcccC---CC
Confidence 46789999999999999999986 789999999 7899999998887643 34678877665543 23
Q ss_pred CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.+++||+|++..++++..+...+++.+.++|+|||.++++..
T Consensus 183 ~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 183 EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 457899999999999988899999999999999999998753
No 24
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.63 E-value=1.6e-15 Score=102.92 Aligned_cols=93 Identities=18% Similarity=0.264 Sum_probs=76.5
Q ss_pred EEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCcc
Q 028673 69 IELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146 (205)
Q Consensus 69 LdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD 146 (205)
||+|||+|..+..+++. +.+|+++|. +++++.++++.... .+.+...+..+. +..+++||
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---------------~~~~~~~d~~~l---~~~~~sfD 62 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---------------GVSFRQGDAEDL---PFPDNSFD 62 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---------------TEEEEESBTTSS---SS-TT-EE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---------------CchheeehHHhC---cccccccc
Confidence 89999999999999999 788999999 78899888876544 344666554444 44578999
Q ss_pred EEEEcccccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673 147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV 179 (205)
Q Consensus 147 ~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i 179 (205)
+|+++.++++.+....+++.+.+.|||||.+++
T Consensus 63 ~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 63 VVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 999999999999999999999999999999875
No 25
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.61 E-value=1.6e-14 Score=114.46 Aligned_cols=108 Identities=17% Similarity=0.186 Sum_probs=81.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
++.+|||+|||||.++..+++. + .+|+++|+ ++|++.+++.+...+. .++++...|..+ ++
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------------~~i~~v~~da~~---lp 111 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------------QNIEFVQGDAED---LP 111 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------------SEEEEE-BTTB-----
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------------CCeeEEEcCHHH---hc
Confidence 6789999999999999999876 3 47999999 8899999999887643 368888855444 44
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
..+++||.|.++-.+.+..+.+..++.+.+.|||||++++..-.+-.
T Consensus 112 ~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 112 FPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred CCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 45689999999988888889999999999999999998887665544
No 26
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.60 E-value=2.5e-14 Score=116.96 Aligned_cols=101 Identities=22% Similarity=0.338 Sum_probs=82.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
++++|||+|||+|..++.+++.|.+|+++|. +.+++.++++++.++. ++++...|..... ..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l-------------~v~~~~~D~~~~~----~~ 182 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL-------------NIRTGLYDINSAS----IQ 182 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEechhccc----cc
Confidence 4569999999999999999999999999999 7899999999887743 4566555544322 25
Q ss_pred CCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEE
Q 028673 143 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
++||+|+++.++++. +....+++.+.++|+|||.+++..
T Consensus 183 ~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 183 EEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 689999999988764 467789999999999999977654
No 27
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.60 E-value=2.6e-14 Score=114.61 Aligned_cols=130 Identities=23% Similarity=0.306 Sum_probs=94.3
Q ss_pred EEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHH
Q 028673 22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLP 99 (205)
Q Consensus 22 ~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~ 99 (205)
...+..+|+ -.+|...++.+..+.+++... ..++++|||+|||+|.+++.+++.|+. |+++|+ +.+++
T Consensus 87 ~~~i~i~p~-~afgtg~h~tt~~~l~~l~~~---------~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~ 156 (250)
T PRK00517 87 EINIELDPG-MAFGTGTHPTTRLCLEALEKL---------VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVE 156 (250)
T ss_pred eEEEEECCC-CccCCCCCHHHHHHHHHHHhh---------cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHH
Confidence 444555553 233444467778888887653 336789999999999999999998875 999999 78999
Q ss_pred HHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673 100 LLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV 179 (205)
Q Consensus 100 ~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i 179 (205)
.+++|++.|+. ...+.+.. + +.+||+|+++- ..+.+..+++.+.++|+|||.+++
T Consensus 157 ~A~~n~~~~~~-----------~~~~~~~~---~--------~~~fD~Vvani---~~~~~~~l~~~~~~~LkpgG~lil 211 (250)
T PRK00517 157 AARENAELNGV-----------ELNVYLPQ---G--------DLKADVIVANI---LANPLLELAPDLARLLKPGGRLIL 211 (250)
T ss_pred HHHHHHHHcCC-----------CceEEEcc---C--------CCCcCEEEEcC---cHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99999998853 11222211 1 12799999872 234466888999999999999999
Q ss_pred EEeeccc
Q 028673 180 MFSLSMF 186 (205)
Q Consensus 180 ~~~~r~~ 186 (205)
+......
T Consensus 212 sgi~~~~ 218 (250)
T PRK00517 212 SGILEEQ 218 (250)
T ss_pred EECcHhh
Confidence 8665443
No 28
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.60 E-value=1.6e-14 Score=110.33 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=80.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
++++|||+|||+|.+++.++..+ ++|+++|. +++++.+++|++.++. +++++...+..+..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~------------~~i~~i~~d~~~~~---- 105 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL------------NNVEIVNGRAEDFQ---- 105 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC------------CCeEEEecchhhcc----
Confidence 57899999999999999998764 47999999 7899999999988753 35788887765532
Q ss_pred CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
..++||+|++.. ...++.+++.+.++|+|||.+++...
T Consensus 106 ~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 106 HEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 246899999864 34677889999999999999988754
No 29
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.60 E-value=3.1e-14 Score=109.18 Aligned_cols=100 Identities=19% Similarity=0.260 Sum_probs=82.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
++.+|||+|||+|..++.+++. +++|+++|. +++++.+++|++.++. +++.+...+..+.. .
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------------~~i~~~~~d~~~~~---~ 109 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------------KNVTVVHGRAEEFG---Q 109 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------------CCEEEEeccHhhCC---C
Confidence 3789999999999999999864 568999999 7899999999998854 34788776655432 2
Q ss_pred CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL 183 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~ 183 (205)
.++||+|+++. ...++.+++.+.++|+|||.+++....
T Consensus 110 -~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 110 -EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred -CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 56899999974 356789999999999999999988654
No 30
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.60 E-value=1.9e-14 Score=118.45 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=80.9
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
...++++|||+|||+|..+..++..|+ .|+++|. +.++..++....... ...++.+...+..+..
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~-----------~~~~v~~~~~~ie~lp-- 184 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD-----------NDKRAILEPLGIEQLH-- 184 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc-----------cCCCeEEEECCHHHCC--
Confidence 356789999999999999999998887 4999999 667655432211110 0134566665544432
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
. ..+||+|+++.++||......+++.+++.|+|||.+++...
T Consensus 185 -~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 185 -E-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred -C-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 2 34899999999999999999999999999999999998743
No 31
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.59 E-value=2.9e-14 Score=118.19 Aligned_cols=106 Identities=19% Similarity=0.191 Sum_probs=81.4
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
..++++|||+|||+|..+..++..|+. |+++|. +.++..++.. .... ....++.+...+..+..
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~--~~~~---------~~~~~i~~~~~d~e~lp--- 185 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAV--RKLL---------GNDQRAHLLPLGIEQLP--- 185 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHH--HHhc---------CCCCCeEEEeCCHHHCC---
Confidence 457899999999999999999998875 999998 5555433222 1111 01235777776655442
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
. ..+||+|++..++||..+...+++.+++.|+|||.+++...
T Consensus 186 ~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 186 A-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred C-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 2 56899999999999999999999999999999999998753
No 32
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.58 E-value=2.5e-14 Score=109.40 Aligned_cols=103 Identities=24% Similarity=0.306 Sum_probs=80.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
..+..++||||||.|.-++.+|++|..|+++|. +.+++.+++-++..++ .++....|..+..
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l-------------~i~~~~~Dl~~~~---- 90 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL-------------DIRTRVADLNDFD---- 90 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT--------------TEEEEE-BGCCBS----
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc-------------eeEEEEecchhcc----
Confidence 446789999999999999999999999999999 6789888887776654 3777777766543
Q ss_pred CCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 141 VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
.+..||+|++.-++++ .+..+.+++.+.+.++|||.+++..
T Consensus 91 ~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 91 FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp -TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 2468999998766654 6677889999999999999988754
No 33
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.58 E-value=6.6e-14 Score=112.47 Aligned_cols=107 Identities=17% Similarity=0.246 Sum_probs=92.5
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 60 PSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 60 ~~~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
...-+|.+|||+|||-|.+++.+|+. |.+|+++++ +++.+.+++.++.-+. ..++++...||.+..
T Consensus 68 l~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----------~~~v~v~l~d~rd~~- 135 (283)
T COG2230 68 LGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----------EDNVEVRLQDYRDFE- 135 (283)
T ss_pred cCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----------CcccEEEeccccccc-
Confidence 35668999999999999999999987 799999999 7799999998888754 468999999999875
Q ss_pred cccCCCCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673 138 IKAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSL 183 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~ 183 (205)
++||-|++-+++.+.. ..+.+++.+.++|+|||.+++-.-.
T Consensus 136 -----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 136 -----EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred -----cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEec
Confidence 3599999999998854 5999999999999999997766543
No 34
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.58 E-value=5.4e-14 Score=113.44 Aligned_cols=109 Identities=19% Similarity=0.139 Sum_probs=85.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
++.+|||+|||||..+..+++. + .+|+++|. ++|++.++++...... ....++++...+..+. +
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---------~~~~~i~~~~~d~~~l---p 140 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---------SCYKNIEWIEGDATDL---P 140 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---------ccCCCeEEEEcccccC---C
Confidence 5789999999999999988875 4 47999999 7899999876542110 0123577777554433 3
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
..+++||+|+++.++++..+...+++.+.+.|+|||.+++....+
T Consensus 141 ~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 345689999999999998899999999999999999999886544
No 35
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.57 E-value=5.7e-14 Score=113.43 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=83.5
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
..++.+|||+|||+|..+..+++. +++|+++|+ +++++.++++.... .++.+...|..+. +
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~i~~~~~D~~~~---~ 112 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--------------NKIEFEANDILKK---D 112 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--------------CceEEEECCcccC---C
Confidence 346789999999999999888764 779999999 78999888765432 3567777555432 2
Q ss_pred cCCCCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 140 AVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
..+.+||+|++.+++++.. ....+++.+.++|+|||.++++....
T Consensus 113 ~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 113 FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 2356899999999887754 77899999999999999999987643
No 36
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.57 E-value=5.3e-14 Score=113.91 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=90.7
Q ss_pred ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCC
Q 028673 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (205)
Q Consensus 40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (205)
.+-....+++... ....+|.+|||||||.|-+++.+++. |++|+++.+ ++..+.+++.++..+.
T Consensus 45 ~AQ~~k~~~~~~~-------~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl------- 110 (273)
T PF02353_consen 45 EAQERKLDLLCEK-------LGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL------- 110 (273)
T ss_dssp HHHHHHHHHHHTT-------TT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS-------
T ss_pred HHHHHHHHHHHHH-------hCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC-------
Confidence 3344555566554 34567899999999999999999988 999999999 7788999988887754
Q ss_pred CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 118 ~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
.+++++...|+.+.. .+||.|++-+++.+. ..++.+++.+.++|+|||.+++-.-.+
T Consensus 111 ----~~~v~v~~~D~~~~~------~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 111 ----EDRVEVRLQDYRDLP------GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp ----SSTEEEEES-GGG---------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred ----CCceEEEEeeccccC------CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 567888888876553 399999999999886 678999999999999999998765443
No 37
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=3.7e-14 Score=111.87 Aligned_cols=106 Identities=15% Similarity=0.221 Sum_probs=89.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
+|.+|||+|||||-.++.+++.. ++|+++|+ +.|++.+++.+..-+. .++++.. ++.+.++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~------------~~i~fv~---~dAe~LPf 115 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV------------QNVEFVV---GDAENLPF 115 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc------------cceEEEE---echhhCCC
Confidence 68999999999999999999885 57999999 7899999998776432 1267777 44445556
Q ss_pred CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
.+.+||+|.++-.+.+..+++..|+.+.+.|||||++++..-.+
T Consensus 116 ~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 116 PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 78899999999999999999999999999999999887776544
No 38
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.3e-13 Score=103.64 Aligned_cols=105 Identities=29% Similarity=0.373 Sum_probs=78.5
Q ss_pred EcCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-c
Q 028673 18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-I 95 (205)
Q Consensus 18 ~~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~ 95 (205)
+...++.++|+++..... +.+|.. ... ..+.+|++|+|||||||.+|+.++.+|++ |+++|+ +
T Consensus 14 f~~p~~~LEQY~Tp~~~A------a~il~~-a~~--------~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~ 78 (198)
T COG2263 14 FPNPKLGLEQYRTPAPLA------AYILWV-AYL--------RGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDP 78 (198)
T ss_pred CCCCCccceecCCChHHH------HHHHHH-HHH--------cCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCH
Confidence 344567788888643332 111111 111 46789999999999999999999999986 999999 8
Q ss_pred chHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC
Q 028673 96 EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA 156 (205)
Q Consensus 96 ~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~ 156 (205)
++++.+++|++.+ ..++.+...|..+. ..++|.++.|+++-.
T Consensus 79 ~a~ei~r~N~~~l-------------~g~v~f~~~dv~~~------~~~~dtvimNPPFG~ 120 (198)
T COG2263 79 EALEIARANAEEL-------------LGDVEFVVADVSDF------RGKFDTVIMNPPFGS 120 (198)
T ss_pred HHHHHHHHHHHhh-------------CCceEEEEcchhhc------CCccceEEECCCCcc
Confidence 9999999999885 35688888666554 468899999888744
No 39
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.56 E-value=9.3e-15 Score=103.51 Aligned_cols=106 Identities=21% Similarity=0.248 Sum_probs=84.3
Q ss_pred CCeEEEeCCCccHHHHHHHHhC-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 65 GKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
|.+|||+|||+|..++.+++.+ .+++++|+ +.+++.++.|+..++. .+++++...|+.+... ....
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----------~~~~~~~~~D~~~~~~-~~~~ 68 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----------DDRVEVIVGDARDLPE-PLPD 68 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----------TTTEEEEESHHHHHHH-TCTT
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----------CceEEEEECchhhchh-hccC
Confidence 4689999999999999999999 78999999 8899999999998854 4568888877755431 1235
Q ss_pred CCccEEEEcccccCCc--------ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 143 PPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~--------~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
++||+|++++++.... ....+++.+.++|+|||.+++..+
T Consensus 69 ~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 69 GKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp T-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 7999999998887532 346789999999999999998765
No 40
>PRK14968 putative methyltransferase; Provisional
Probab=99.56 E-value=9.3e-14 Score=106.24 Aligned_cols=120 Identities=22% Similarity=0.266 Sum_probs=90.4
Q ss_pred cccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCC
Q 028673 39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (205)
Q Consensus 39 W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (205)
++.+.+|++++... ++++|||+|||+|..++.++..+.+|+++|+ +++++.+++|+..++..
T Consensus 9 ~~~~~~l~~~~~~~-----------~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------ 71 (188)
T PRK14968 9 AEDSFLLAENAVDK-----------KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIR------ 71 (188)
T ss_pred chhHHHHHHhhhcc-----------CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCC------
Confidence 45567777777532 6789999999999999999999889999999 78999999999887531
Q ss_pred CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc---------------------ChHhHHHHHHHhhCCCcE
Q 028673 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---------------------LLEPLLQTIFALSGPKTT 176 (205)
Q Consensus 118 ~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~---------------------~~~~ll~~~~~~l~~~g~ 176 (205)
...+.+...|+.+.. ...+||+|+++++++... .+..+++.+.++|+|+|.
T Consensus 72 ----~~~~~~~~~d~~~~~----~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~ 143 (188)
T PRK14968 72 ----NNGVEVIRSDLFEPF----RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGR 143 (188)
T ss_pred ----CcceEEEeccccccc----cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeE
Confidence 011666666654432 233799999988765421 245688999999999999
Q ss_pred EEEEEee
Q 028673 177 ILVMFSL 183 (205)
Q Consensus 177 ~~i~~~~ 183 (205)
+++....
T Consensus 144 ~~~~~~~ 150 (188)
T PRK14968 144 ILLLQSS 150 (188)
T ss_pred EEEEEcc
Confidence 8887653
No 41
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.55 E-value=1.2e-13 Score=120.31 Aligned_cols=107 Identities=19% Similarity=0.235 Sum_probs=88.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
++.+|||+|||+|..++.+++. +++|+++|+ +++++.+++|+... ..++.+...|+.+.. ..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------------~~~v~~~~~d~~~~~---~~ 329 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------------KCSVEFEVADCTKKT---YP 329 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------------CCceEEEEcCcccCC---CC
Confidence 5679999999999999988875 778999999 78999998876422 235778787765432 23
Q ss_pred CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
+++||+|++.+++++....+.+++.+.+.|+|||.+++....+..
T Consensus 330 ~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~ 374 (475)
T PLN02336 330 DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSP 374 (475)
T ss_pred CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 468999999999999999999999999999999999999765543
No 42
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.55 E-value=5.6e-14 Score=112.67 Aligned_cols=101 Identities=16% Similarity=0.091 Sum_probs=81.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
.+.+|||+|||+|..+..+++.+.+|+++|+ +++++.++++... ..+...|.... +..+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~-----------------~~~~~~d~~~~---~~~~ 101 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAA-----------------DHYLAGDIESL---PLAT 101 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCC-----------------CCEEEcCcccC---cCCC
Confidence 4678999999999999999988999999999 7898888775321 23444444332 2335
Q ss_pred CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
.+||+|+++.++++..+...+++.+.+.|+|||.++++....
T Consensus 102 ~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 689999999999888899999999999999999999986543
No 43
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.55 E-value=1.1e-13 Score=109.46 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=84.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
++++|||+|||+|..+..+++. + .+|+++|+ +++++.++++++.++. +++++...|..+..
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~--- 109 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------------HNVELVHGNAMELP--- 109 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------------CceEEEEechhcCC---
Confidence 5789999999999999999875 3 47999999 7899999999876532 35777776554432
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
....+||+|+++.++.+......+++.+.++|+|||.+++...
T Consensus 110 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 110 FDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 2356899999998888888889999999999999999988764
No 44
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.54 E-value=1.7e-13 Score=111.12 Aligned_cols=105 Identities=21% Similarity=0.194 Sum_probs=85.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-CC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 63 LKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~-g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
.++.+|||+|||+|..++.+++. +. +|+++|. +++++.+++|+..++. .++++...++.+.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------------~~v~~~~~d~~~l--- 140 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------------TNVEFRLGEIEAL--- 140 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------------CCEEEEEcchhhC---
Confidence 36789999999999988877764 44 6999999 8899999999877643 3567777655433
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
+..+++||+|+++.++++....+.+++.+.++|+|||+++++..
T Consensus 141 ~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 141 PVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 22346899999998888888888999999999999999999754
No 45
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.54 E-value=1.5e-13 Score=110.57 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=79.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
.++.+|||+|||+|..+..+++. +.+|+++|+ +.+++.++++.. ++.+...|..+..
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----------------~~~~~~~d~~~~~--- 89 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----------------DCQFVEADIASWQ--- 89 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----------------CCeEEECchhccC---
Confidence 35789999999999999999876 468999999 789988887531 3455554433221
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
...+||+|+++.++++......+++.+.+.|+|||.+++..+
T Consensus 90 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 90 -PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred -CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 235899999999998888889999999999999999998754
No 46
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.54 E-value=2.8e-15 Score=103.27 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=61.0
Q ss_pred EEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc-CCCC
Q 028673 69 IELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPP 144 (205)
Q Consensus 69 LdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~-~~~~ 144 (205)
||+|||+|..+..+... +.+++++|+ +.|++.+++.+..... .......+...+.... ..++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 66 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN--------------DNFERLRFDVLDLFDYDPPES 66 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----------------EEEEE--SSS---CCC---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--------------cceeEEEeecCChhhcccccc
Confidence 79999999999999888 667999999 7899888877776532 1222222232222111 1259
Q ss_pred ccEEEEcccccCCcChHhHHHHHHHhhCCCcEE
Q 028673 145 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (205)
Q Consensus 145 fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~ 177 (205)
||+|+++.++++.+..+.+++.+.++|+|||.+
T Consensus 67 fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 67 FDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred cceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999975
No 47
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.53 E-value=1.3e-13 Score=110.77 Aligned_cols=97 Identities=21% Similarity=0.195 Sum_probs=78.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
.++.+|||+|||+|.++..+++. +.+|+++|. +.|++.++++ ++++...|..+. .
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~~d~~~~---~ 85 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------------GVDARTGDVRDW---K 85 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------------CCcEEEcChhhC---C
Confidence 35789999999999999999987 678999999 7788887652 245555444322 1
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
..++||+|+++.++++......+++.+.+.|+|||.+++..+
T Consensus 86 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 86 -PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred -CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 246899999999999988899999999999999999998754
No 48
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.52 E-value=3e-14 Score=106.01 Aligned_cols=99 Identities=23% Similarity=0.209 Sum_probs=79.7
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
..++++|||+|||+|..+..+++.|.+|+++|. +.+++. .+ ......+-. ....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~~----------------~~~~~~~~~---~~~~ 74 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------RN----------------VVFDNFDAQ---DPPF 74 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------TT----------------SEEEEEECH---THHC
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------hh----------------hhhhhhhhh---hhhc
Confidence 346789999999999999999999999999999 667666 11 122221111 1122
Q ss_pred CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
..++||+|++++++++..+...+++.+.++|+|||.++++.+.+.
T Consensus 75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 357999999999999999999999999999999999999999875
No 49
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=2.6e-13 Score=110.30 Aligned_cols=99 Identities=22% Similarity=0.321 Sum_probs=78.6
Q ss_pred eEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673 67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (205)
Q Consensus 67 ~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~ 143 (205)
+|||||||||.+++.+++.+. +|+++|+ +++++.|++|+..|+. .++.+...||-..- .+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l------------~~~~~~~~dlf~~~-----~~ 175 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL------------VRVLVVQSDLFEPL-----RG 175 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC------------ccEEEEeeeccccc-----CC
Confidence 799999999999999999876 7999999 8899999999999964 24444444666542 44
Q ss_pred CccEEEEcccccCCc-------------------------ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 144 PFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 144 ~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
+||+|++|+++-..+ .+..++..+...|+|+|.+++...
T Consensus 176 ~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 176 KFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred ceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 999999999875543 134567777888999988887766
No 50
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.51 E-value=1.8e-13 Score=107.84 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=85.6
Q ss_pred CeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
++|||+|||+|..+..+++.. .+|+++|+ +++++.+++++...+. .+++.+...|..... ..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----------~~~i~~~~~d~~~~~----~~ 65 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----------QGRIRIFYRDSAKDP----FP 65 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CcceEEEecccccCC----CC
Confidence 479999999999999998763 57999999 7899999999877643 356788776664331 13
Q ss_pred CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL 183 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~ 183 (205)
++||+|++..++++....+.+++.+.++|+|||.+++....
T Consensus 66 ~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 66 DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 58999999999999888999999999999999999988653
No 51
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.51 E-value=1.6e-13 Score=109.89 Aligned_cols=106 Identities=16% Similarity=0.247 Sum_probs=83.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHh----CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
.+.+|||+|||+|..++.+++. +.+|+++|. ++|++.+++++..++. ..++++...+..+..
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----------~~~v~~~~~d~~~~~-- 122 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----------PTPVDVIEGDIRDIA-- 122 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEeCChhhCC--
Confidence 5679999999999999888762 568999999 8899999999987643 246777775554332
Q ss_pred ccCCCCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 139 KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
.+.+|+|+++-++++.+ ....+++.+.+.|+|||.++++...+.
T Consensus 123 ---~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247)
T PRK15451 123 ---IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 168 (247)
T ss_pred ---CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 24699999988877643 346899999999999999999976543
No 52
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.50 E-value=6.3e-14 Score=114.39 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=86.2
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 60 ~~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
...++++.|||+|||||++|+.+|+.|++ |+++|.+++.+.+.+.+..|+. .+.+++......+.
T Consensus 56 ~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~-----------~~ii~vi~gkvEdi--- 121 (346)
T KOG1499|consen 56 KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGL-----------EDVITVIKGKVEDI--- 121 (346)
T ss_pred hhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCc-----------cceEEEeecceEEE---
Confidence 45789999999999999999999999996 9999999988999999999965 45688888554444
Q ss_pred ccCCCCccEEEEccc---ccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673 139 KAVAPPFDYIIGTDV---VYAEHLLEPLLQTIFALSGPKTTILV 179 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~---~y~~~~~~~ll~~~~~~l~~~g~~~i 179 (205)
..+.++.|+|++-.. +++++.++.++-.--+.|+|||.++=
T Consensus 122 ~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 122 ELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred ecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 222579999987654 44467777888888888999998763
No 53
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.50 E-value=1.4e-12 Score=92.87 Aligned_cols=101 Identities=25% Similarity=0.266 Sum_probs=77.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
++.+|||+|||+|..++.+++.. .+|+++|+ +.+++.+++|++.++. .++++...+..... ..
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~~~~~~~--~~ 84 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV------------SNIVIVEGDAPEAL--ED 84 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC------------CceEEEeccccccC--hh
Confidence 46799999999999999999873 57999999 7899999999887743 24566554433211 11
Q ss_pred CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
..++||+|++... ......+++.+.+.|+|||.+++..
T Consensus 85 ~~~~~D~v~~~~~---~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 85 SLPEPDRVFIGGS---GGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hcCCCCEEEECCc---chhHHHHHHHHHHHcCCCCEEEEEe
Confidence 2358999998643 2455789999999999999998864
No 54
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.50 E-value=4.5e-13 Score=106.18 Aligned_cols=109 Identities=18% Similarity=0.173 Sum_probs=88.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
..++.+|||+|||+|..+..+++.+++|+++|. +++++.++.++..++. ++++...++.+... .
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~~~~--~ 110 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL-------------KIDYRQTTAEELAA--E 110 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC-------------ceEEEecCHHHhhh--h
Confidence 346789999999999999999999999999999 7788999888776532 35565555543321 1
Q ss_pred CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
..++||+|+++.++.+......+++.+.++|+|||.++++...+.
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~ 155 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRN 155 (233)
T ss_pred cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCC
Confidence 246899999999999988999999999999999999999876543
No 55
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.49 E-value=9.6e-14 Score=105.45 Aligned_cols=99 Identities=18% Similarity=0.196 Sum_probs=77.2
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~ 144 (205)
.++||+|||.|.++..+|.++.+++++|+ +.+++.+++.+... +++++...+..+.. +.++
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~--------------~~V~~~~~dvp~~~----P~~~ 106 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL--------------PHVEWIQADVPEFW----PEGR 106 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---------------SSEEEEES-TTT-------SS-
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC--------------CCeEEEECcCCCCC----CCCC
Confidence 47999999999999999999988999999 78999999876532 46888887665442 4679
Q ss_pred ccEEEEcccccCCcC---hHhHHHHHHHhhCCCcEEEEEEe
Q 028673 145 FDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 145 fD~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
||+|+.+.++|+... +..++..+...|+|||.++++..
T Consensus 107 FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 107 FDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999999999765 44677888888999999999886
No 56
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.49 E-value=1e-12 Score=111.60 Aligned_cols=119 Identities=21% Similarity=0.245 Sum_probs=88.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~~~ 140 (205)
++++|||+|||||.+++.++..|+ +|+++|. +.+++.+++|++.|+.. ..++++...|..+.- ....
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----------~~~v~~i~~D~~~~l~~~~~ 289 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----------LSKAEFVRDDVFKLLRTYRD 289 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----------CCcEEEEEccHHHHHHHHHh
Confidence 578999999999999998887777 6999999 78999999999999641 135777776654321 1111
Q ss_pred CCCCccEEEEcccccCCc---------ChHhHHHHHHHhhCCCcEEEEEEeeccchhHHHH
Q 028673 141 VAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILVMFSLSMFSLTFFC 192 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~---------~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~~~~ 192 (205)
...+||+|++.++.|... .+..+++...++|+|||.++.+......+.+.|.
T Consensus 290 ~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~ 350 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQ 350 (396)
T ss_pred cCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHH
Confidence 245899999988776543 3556666778899999999987765555555443
No 57
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.49 E-value=5.9e-13 Score=106.04 Aligned_cols=107 Identities=13% Similarity=0.090 Sum_probs=84.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHh----CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
++.+|||+|||+|..+..+++. +.+|+++|+ ++|++.+++++...+. ..++.+...|+.+..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~-- 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----------EIPVEILCNDIRHVE-- 119 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECChhhCC--
Confidence 5679999999999999988874 568999999 8899999998876421 235778776665442
Q ss_pred ccCCCCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 139 KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
.+.+|+|+++.++++.. ....+++.+.+.|+|||.++++...+..
T Consensus 120 ---~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~ 166 (239)
T TIGR00740 120 ---IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE 166 (239)
T ss_pred ---CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCC
Confidence 23689999988877643 4568999999999999999999876543
No 58
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.49 E-value=9.3e-13 Score=101.10 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=77.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
.+.+|||+|||+|.+++.+++.+ .+|+++|. +++++.+++|++.++. .++++...+... .
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~------------~~i~~~~~d~~~-----~ 93 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC------------GNIDIIPGEAPI-----E 93 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------------CCeEEEecCchh-----h
Confidence 67799999999999999999875 47999999 7899999999988753 246666544311 1
Q ss_pred CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
...+||+|+++.. ...+..+++.+.+.|+|||.+++...
T Consensus 94 ~~~~~D~v~~~~~---~~~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 94 LPGKADAIFIGGS---GGNLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred cCcCCCEEEECCC---ccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence 2357999998743 24577899999999999999988754
No 59
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.49 E-value=3.4e-13 Score=103.70 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=82.7
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
..++++||||+||+|.+|+.++++|+ +|+++|. +.+++.+++|++.|+. .+++++...|..+.-...
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-----------~~~~~~~~~D~~~~l~~~ 115 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-----------GEQAEVVRNSALRALKFL 115 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------cccEEEEehhHHHHHHHh
Confidence 35788999999999999999999998 5999999 7899999999999854 235677775553221101
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHH--hhCCCcEEEEEEeecc
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILVMFSLSM 185 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~--~l~~~g~~~i~~~~r~ 185 (205)
....+++.|+..|+.|.....+.+++.+.. +++++|.+++.+..+.
T Consensus 116 ~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~~~ 163 (189)
T TIGR00095 116 AKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDREP 163 (189)
T ss_pred hccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecCCC
Confidence 112234445555888887888888887755 5788888777766543
No 60
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.49 E-value=4.7e-13 Score=109.19 Aligned_cols=104 Identities=16% Similarity=0.191 Sum_probs=81.4
Q ss_pred CCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
+.+|||+|||+|.+++.+++. +.+|+++|+ +++++.+++|++.++. .+++.+...|+.+.. .
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----------~~~i~~~~~D~~~~~----~ 186 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIQSDLFAAL----P 186 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhcc----C
Confidence 468999999999999999987 458999999 7899999999998854 346788887764321 2
Q ss_pred CCCccEEEEcccccCCc-------------------------ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673 142 APPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILVMFSL 183 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~~~g~~~i~~~~ 183 (205)
..+||+|+++++..... ....+++.+.++|+|||.+++....
T Consensus 187 ~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 187 GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 34799999997754321 1246678888899999999987764
No 61
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.48 E-value=6e-13 Score=107.31 Aligned_cols=106 Identities=21% Similarity=0.215 Sum_probs=77.7
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
.+++|++|||+|||.|..+..++..|++ |+++|- +.. .++-.+-+.... ....+....+...+.
T Consensus 112 ~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf--~~QF~~i~~~lg---------~~~~~~~lplgvE~L--- 177 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF--YLQFEAIKHFLG---------QDPPVFELPLGVEDL--- 177 (315)
T ss_pred CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH--HHHHHHHHHHhC---------CCccEEEcCcchhhc---
Confidence 3679999999999999999999999997 999997 432 222222222110 011233333333333
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
+. .+.||+|++..|+||..++-..++.++..|++||.+++-.
T Consensus 178 p~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 178 PN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred cc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 33 5689999999999999999999999999999999998764
No 62
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.48 E-value=1.5e-12 Score=110.01 Aligned_cols=119 Identities=17% Similarity=0.180 Sum_probs=87.9
Q ss_pred cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCC
Q 028673 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (205)
Q Consensus 41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (205)
.+..+.+.+.... .++.+|||+|||+|.+++.+++. +++|+++|+ +++++.+++|++.++
T Consensus 237 eTE~LVe~aL~~l---------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g-------- 299 (423)
T PRK14966 237 ETEHLVEAVLARL---------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG-------- 299 (423)
T ss_pred cHHHHHHHhhhcc---------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------
Confidence 3567777776531 14568999999999999998875 567999999 889999999998874
Q ss_pred CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc-------------------------ChHhHHHHHHHhhC
Q 028673 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSG 172 (205)
Q Consensus 118 ~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~ 172 (205)
.++.+...|+.+.. .. ...+||+|++|++..... .+..+++.+.++|+
T Consensus 300 -----~rV~fi~gDl~e~~-l~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lk 372 (423)
T PRK14966 300 -----ARVEFAHGSWFDTD-MP-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLA 372 (423)
T ss_pred -----CcEEEEEcchhccc-cc-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcC
Confidence 25788887775432 11 134799999998754321 13366777778899
Q ss_pred CCcEEEEEEee
Q 028673 173 PKTTILVMFSL 183 (205)
Q Consensus 173 ~~g~~~i~~~~ 183 (205)
|||.+++....
T Consensus 373 pgG~lilEiG~ 383 (423)
T PRK14966 373 EGGFLLLEHGF 383 (423)
T ss_pred CCcEEEEEECc
Confidence 99998876654
No 63
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.48 E-value=2.7e-13 Score=104.85 Aligned_cols=107 Identities=15% Similarity=0.103 Sum_probs=83.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
.+.+|||||||+|.+++.++.++ ++|+++|. +++++.+++|++.++. .++.+...|+.+.. ...
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~------------~~v~~~~~D~~~~l--~~~ 118 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA------------GNARVVNTNALSFL--AQP 118 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------------CcEEEEEchHHHHH--hhc
Confidence 56799999999999999765555 57999999 8899999999998853 35777776664321 112
Q ss_pred CCCccEEEEcccccCCcChHhHHHHHHHh--hCCCcEEEEEEeecc
Q 028673 142 APPFDYIIGTDVVYAEHLLEPLLQTIFAL--SGPKTTILVMFSLSM 185 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~--l~~~g~~~i~~~~r~ 185 (205)
..+||+|+++++ |.....+.+++.+... ++|++.+|+.+..+.
T Consensus 119 ~~~fDlV~~DPP-y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~ 163 (199)
T PRK10909 119 GTPHNVVFVDPP-FRKGLLEETINLLEDNGWLADEALIYVESEVEN 163 (199)
T ss_pred CCCceEEEECCC-CCCChHHHHHHHHHHCCCcCCCcEEEEEecCCC
Confidence 346999999777 6777788888888774 789999999987653
No 64
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.48 E-value=9.5e-13 Score=103.27 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=76.7
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC---EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
..++.+|||+|||+|..+..+++... +|+++|. +++++.+++|++.++. +++++...|..+..
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------------~~v~~~~~d~~~~~- 141 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------------DNVIVIVGDGTQGW- 141 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------------CCeEEEECCcccCC-
Confidence 44678999999999999999998743 4999999 8899999999988753 45777776554321
Q ss_pred cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
....+||+|+++... ..+.+.+.+.|+|||++++...
T Consensus 142 --~~~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 142 --EPLAPYDRIYVTAAG------PKIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred --cccCCCCEEEEcCCc------ccccHHHHHhcCcCcEEEEEEc
Confidence 123589999987543 3345667888999999888754
No 65
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.47 E-value=1.4e-12 Score=104.63 Aligned_cols=122 Identities=16% Similarity=0.107 Sum_probs=85.9
Q ss_pred cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCC
Q 028673 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (205)
Q Consensus 41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (205)
.+..|.+.+.... .....+.+|||+|||+|.+++.+++. +.+|+++|+ +++++.+++|++.|+
T Consensus 69 ~Te~Lv~~~l~~~------~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-------- 134 (251)
T TIGR03704 69 RTEFLVDEAAALA------RPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-------- 134 (251)
T ss_pred cHHHHHHHHHHhh------cccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------
Confidence 3556666665431 01112458999999999999999876 458999999 889999999998873
Q ss_pred CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc--------------------------ChHhHHHHHHHhh
Q 028673 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFALS 171 (205)
Q Consensus 118 ~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------~~~~ll~~~~~~l 171 (205)
+++...|+.+.... ...++||+|++++++.... .+..+++.+.++|
T Consensus 135 -------~~~~~~D~~~~l~~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L 206 (251)
T TIGR03704 135 -------GTVHEGDLYDALPT-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWL 206 (251)
T ss_pred -------CEEEEeechhhcch-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 25566666442211 1135799999998765321 1346777888999
Q ss_pred CCCcEEEEEEeec
Q 028673 172 GPKTTILVMFSLS 184 (205)
Q Consensus 172 ~~~g~~~i~~~~r 184 (205)
+|||.+++.+...
T Consensus 207 ~~gG~l~l~~~~~ 219 (251)
T TIGR03704 207 APGGHLLVETSER 219 (251)
T ss_pred CCCCEEEEEECcc
Confidence 9999999887643
No 66
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.46 E-value=2.4e-12 Score=100.31 Aligned_cols=100 Identities=19% Similarity=0.187 Sum_probs=75.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
.++.+|||+|||+|..+..+++. +.+|+++|. +++++.+++|++.++. ..++++...|..+..
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----------~~~v~~~~~d~~~~~-- 137 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----------WGVVEVYHGDGKRGL-- 137 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCcEEEEECCcccCC--
Confidence 35679999999999999888875 358999999 8899999999987753 235677775544321
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
....+||.|+++..+. .+.+.+.+.|+|||++++...
T Consensus 138 -~~~~~fD~Ii~~~~~~------~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 138 -EKHAPFDAIIVTAAAS------TIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred -ccCCCccEEEEccCcc------hhhHHHHHhcCcCcEEEEEEc
Confidence 1245899999986543 334567788999999988654
No 67
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.46 E-value=5.1e-13 Score=103.86 Aligned_cols=111 Identities=14% Similarity=-0.026 Sum_probs=82.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeec-CCCCCcc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW-GNEDHIK 139 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw-~~~~~~~ 139 (205)
.+.+|||+|||+|..+..+++.. .+|+++|. +++++.++++++.++. .++.+...++ ..... .
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~l~~-~ 106 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL------------TNLRLLCGDAVEVLLD-M 106 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC------------CCEEEEecCHHHHHHH-H
Confidence 46789999999999999998763 46999999 8899999999987743 4577888666 32211 0
Q ss_pred cCCCCccEEEEcccccCC---c-----ChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673 140 AVAPPFDYIIGTDVVYAE---H-----LLEPLLQTIFALSGPKTTILVMFSLSMFS 187 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~---~-----~~~~ll~~~~~~l~~~g~~~i~~~~r~~~ 187 (205)
....+||.|+++.+.... + ..+.+++.+.++|+|||.++++...+...
T Consensus 107 ~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~ 162 (202)
T PRK00121 107 FPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYA 162 (202)
T ss_pred cCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHH
Confidence 224689999987433211 1 25789999999999999999987654443
No 68
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.45 E-value=2.3e-12 Score=100.96 Aligned_cols=114 Identities=16% Similarity=0.192 Sum_probs=81.6
Q ss_pred cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCC
Q 028673 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (205)
Q Consensus 41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (205)
++..+..++... ....++.+|||+|||+|..+..+++. + .+|+++|. +++++.+++|++.++.
T Consensus 60 ~~p~~~~~~~~~-------l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------ 126 (212)
T PRK13942 60 SAIHMVAIMCEL-------LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------ 126 (212)
T ss_pred CcHHHHHHHHHH-------cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------
Confidence 345555555554 23446789999999999999988876 3 57999999 8899999999987753
Q ss_pred CCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 117 ~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.++.+...|-... .....+||.|++.... ..+.+.+.+.|+|||++++...
T Consensus 127 ------~~v~~~~gd~~~~---~~~~~~fD~I~~~~~~------~~~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 127 ------DNVEVIVGDGTLG---YEENAPYDRIYVTAAG------PDIPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred ------CCeEEEECCcccC---CCcCCCcCEEEECCCc------ccchHHHHHhhCCCcEEEEEEc
Confidence 3577777553322 1224689999986433 2334567778999999888653
No 69
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.44 E-value=2.5e-12 Score=105.05 Aligned_cols=104 Identities=16% Similarity=0.223 Sum_probs=81.3
Q ss_pred CeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
.+|||+|||+|.+++.+++.. .+|+++|+ +++++.+++|++.++. ..++.+...||.+.. ..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-----------~~~v~~~~~d~~~~~----~~ 180 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-----------EHRVEFIQSNLFEPL----AG 180 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhccC----cC
Confidence 689999999999999999874 57999999 7899999999998853 235888887776432 12
Q ss_pred CCccEEEEcccccCCc-------------------------ChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 143 PPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
.+||+|+++++..... .+..+++.+.++|+|||.+++.....
T Consensus 181 ~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 181 QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 3799999987654321 24467788888999999998877643
No 70
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.44 E-value=1.4e-12 Score=107.52 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=80.5
Q ss_pred CeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 66 KRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
.+|||+|||+|.+++.+++. +.+|+++|+ +++++.+++|++.++. .+++.+...|+.+.. ..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----------~~~i~~~~~D~~~~l----~~ 199 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIESDLFAAL----PG 199 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCcEEEEECchhhhC----CC
Confidence 68999999999999999987 458999999 8899999999998853 346888887764321 13
Q ss_pred CCccEEEEcccccCCc-------------------------ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673 143 PPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILVMFSL 183 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~~~g~~~i~~~~ 183 (205)
.+||+|+++++..... ....+++.+.++|+|||.+++....
T Consensus 200 ~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 200 RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 4799999987653211 1346788888899999999987654
No 71
>PRK08317 hypothetical protein; Provisional
Probab=99.44 E-value=4.6e-12 Score=100.09 Aligned_cols=105 Identities=20% Similarity=0.154 Sum_probs=83.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
..++.+|||+|||+|..+..++... .+|+++|. +.+++.++++.... ..++.+...+.....
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------------~~~~~~~~~d~~~~~- 82 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------------GPNVEFVRGDADGLP- 82 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------------CCceEEEecccccCC-
Confidence 3467899999999999999888763 47999999 77888888773222 235677665554332
Q ss_pred cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
....+||+|++..++.+......+++.+.++|+|||.++++..
T Consensus 83 --~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 83 --FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred --CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 2356899999999999888999999999999999999988764
No 72
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.44 E-value=8.4e-13 Score=111.06 Aligned_cols=157 Identities=20% Similarity=0.109 Sum_probs=111.9
Q ss_pred EEEEcCeEEEEEeCCC-CccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEE
Q 028673 15 NLEVLGHQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITT 92 (205)
Q Consensus 15 ~~~~~~~~~~i~q~~~-~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~ 92 (205)
.+.+.++...+..+.. +-.||..+| -...-+++.. ..+|++||++.|-||..|+.+|..|| +||.+
T Consensus 179 ~~~i~E~g~kf~v~~~~g~kTGfFlD--qR~~R~~l~~----------~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~V 246 (393)
T COG1092 179 EVVIEENGVKFLVDLVDGLKTGFFLD--QRDNRRALGE----------LAAGKRVLNLFSYTGGFSVHAALGGASEVTSV 246 (393)
T ss_pred cEEEEeCCeEEEEecCCcccceeeHH--hHHHHHHHhh----------hccCCeEEEecccCcHHHHHHHhcCCCceEEE
Confidence 3445555566665554 446776555 3333333422 33599999999999999999999999 69999
Q ss_pred cC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-CcccCCCCccEEEEcccccCCc---------ChH
Q 028673 93 DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVAPPFDYIIGTDVVYAEH---------LLE 161 (205)
Q Consensus 93 D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~~~~~~~fD~Ii~~d~~y~~~---------~~~ 161 (205)
|. ..+++.+++|++.|+.. ..++.++..|.-+.- .......+||+|+.-++-|... .+.
T Consensus 247 D~S~~al~~a~~N~~LNg~~----------~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~ 316 (393)
T COG1092 247 DLSKRALEWARENAELNGLD----------GDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYK 316 (393)
T ss_pred eccHHHHHHHHHHHHhcCCC----------ccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHH
Confidence 99 67999999999999862 233455553322111 1122345999999988887732 356
Q ss_pred hHHHHHHHhhCCCcEEEEEEeeccchhHHHHH
Q 028673 162 PLLQTIFALSGPKTTILVMFSLSMFSLTFFCW 193 (205)
Q Consensus 162 ~ll~~~~~~l~~~g~~~i~~~~r~~~~~~~~~ 193 (205)
.++..+.++|+|||+++++...+..+.+.|.-
T Consensus 317 ~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~ 348 (393)
T COG1092 317 DLNDLALRLLAPGGTLVTSSCSRHFSSDLFLE 348 (393)
T ss_pred HHHHHHHHHcCCCCEEEEEecCCccCHHHHHH
Confidence 78888899999999999999999988876543
No 73
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.43 E-value=1.2e-12 Score=108.81 Aligned_cols=101 Identities=14% Similarity=0.103 Sum_probs=80.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
.+.+|||+|||+|..++.+++. +.+|+++|. +++++.++++...+ ++.+...|..+. ..
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~---------------~i~~i~gD~e~l---p~ 174 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---------------ECKIIEGDAEDL---PF 174 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc---------------CCeEEeccHHhC---CC
Confidence 4679999999999999888875 457999999 78999888875432 356666554432 22
Q ss_pred CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
..++||+|+++.++++....+.+++.+.+.|+|||.+++..+
T Consensus 175 ~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 356899999999998888889999999999999999988654
No 74
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.43 E-value=4e-12 Score=115.36 Aligned_cols=114 Identities=23% Similarity=0.170 Sum_probs=89.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
++++|||||||||.+|+.+++.|++ |+++|+ +.+++.+++|++.|+.. .+++++...|..+.. ...
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----------~~~v~~i~~D~~~~l--~~~ 605 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----------GRQHRLIQADCLAWL--KEA 605 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----------ccceEEEEccHHHHH--HHc
Confidence 5789999999999999999999885 999999 78999999999999641 136788886654321 112
Q ss_pred CCCccEEEEcccccCCc-----------ChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673 142 APPFDYIIGTDVVYAEH-----------LLEPLLQTIFALSGPKTTILVMFSLSMFSLT 189 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~-----------~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~ 189 (205)
..+||+|++.++.+... .+..++..+.++|+|||.++++...+.....
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~ 664 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD 664 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh
Confidence 45899999987765421 2457888889999999999998776665543
No 75
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.43 E-value=1.6e-12 Score=102.81 Aligned_cols=100 Identities=16% Similarity=0.088 Sum_probs=80.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
.+++|||+|||+|..+..+++.+. +|+++|. +++++.++.+... ++.+...|..+.. .
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~----------------~~~~~~~d~~~~~---~ 94 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE----------------NVQFICGDAEKLP---L 94 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC----------------CCeEEecchhhCC---C
Confidence 457899999999999999998864 4899999 7787777664331 3566665554432 2
Q ss_pred CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
..++||+|+++.++++......+++.+.++|+|||.++++..
T Consensus 95 ~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 95 EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 356899999999999988899999999999999999998764
No 76
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.43 E-value=5.2e-12 Score=99.99 Aligned_cols=105 Identities=15% Similarity=0.157 Sum_probs=85.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
++.+|||+|||+|..+..++..+ .+|+++|. +.+++.+++++..++. ..++.+...+..+..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~--- 116 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----------SGNVEFVQGDAEALP--- 116 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----------ccCeEEEecccccCC---
Confidence 56899999999999999999876 67999999 7899999998866422 245677776665432
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
....+||+|+++.++++......+++.+.++|+|||.+++...
T Consensus 117 ~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 117 FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 2346899999998888888999999999999999999988754
No 77
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.42 E-value=3.4e-12 Score=100.45 Aligned_cols=109 Identities=20% Similarity=0.185 Sum_probs=87.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
..+.+|||+|||+|..+..+++.+++++++|. +.+++.++.++..++. .++.+...+..+... ..
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~~~--~~ 109 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL------------LKIEYRCTSVEDLAE--KG 109 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEeCCHHHhhc--CC
Confidence 45789999999999999999988889999999 7799999988876632 135555544433321 11
Q ss_pred CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
..+||+|+++.++++......+++.+.+.|++||.++++...+.
T Consensus 110 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 153 (224)
T TIGR01983 110 AKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRT 153 (224)
T ss_pred CCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 36899999999999999999999999999999999998875443
No 78
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.42 E-value=2.6e-12 Score=108.84 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=79.6
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
..++.+|||+|||+|.+++.+++. |++|+++|+ +++++.++++++.. .+++...|+.+.
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l---------------~v~~~~~D~~~l---- 225 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL---------------PVEIRLQDYRDL---- 225 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC---------------eEEEEECchhhc----
Confidence 346789999999999999989875 789999999 78999998876321 255555554332
Q ss_pred cCCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 140 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.++||.|++..++++. ...+.+++.+.++|+|||.+++...
T Consensus 226 --~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 226 --NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred --CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 3589999999988875 3467899999999999999998754
No 79
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.42 E-value=4.9e-12 Score=101.08 Aligned_cols=121 Identities=19% Similarity=0.227 Sum_probs=89.7
Q ss_pred cccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccC
Q 028673 39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM 115 (205)
Q Consensus 39 W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~ 115 (205)
++.+..+.+++.... ...+.+|||+|||+|..++.+++. +.+|+++|. +.+++.++.|+..++.
T Consensus 70 ~~~~~~l~~~~l~~~--------~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----- 136 (251)
T TIGR03534 70 RPDTEELVEAALERL--------KKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL----- 136 (251)
T ss_pred CCChHHHHHHHHHhc--------ccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----
Confidence 345666666665531 123568999999999999999987 457999999 8899999999988753
Q ss_pred CCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcC--------------------------hHhHHHHHHH
Q 028673 116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------------LEPLLQTIFA 169 (205)
Q Consensus 116 ~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~--------------------------~~~ll~~~~~ 169 (205)
.++.+...++.+.. ...+||+|++++++..... +..+++.+.+
T Consensus 137 -------~~~~~~~~d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~ 205 (251)
T TIGR03534 137 -------DNVTFLQSDWFEPL----PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPR 205 (251)
T ss_pred -------CeEEEEECchhccC----cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHH
Confidence 35777777665421 2468999999887654211 2357788889
Q ss_pred hhCCCcEEEEEEee
Q 028673 170 LSGPKTTILVMFSL 183 (205)
Q Consensus 170 ~l~~~g~~~i~~~~ 183 (205)
+|+|||.+++....
T Consensus 206 ~L~~gG~~~~~~~~ 219 (251)
T TIGR03534 206 LLKPGGWLLLEIGY 219 (251)
T ss_pred hcccCCEEEEEECc
Confidence 99999999987654
No 80
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.41 E-value=4.6e-12 Score=98.14 Aligned_cols=104 Identities=20% Similarity=0.294 Sum_probs=79.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
..++.+|||+|||+|.+++.+++. + .+|+++|. +++++.+++|++.++. .+++.+...+..+.
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----------~~~v~~~~~d~~~~-- 104 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----------LNNIVLIKGEAPEI-- 104 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----------CCCeEEEEechhhh--
Confidence 447789999999999999999875 3 47999999 8899999999998852 24567766554332
Q ss_pred cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
.....++||.|+++. ....+..+++.+.++|+|||.+++..
T Consensus 105 l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 105 LFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred HhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEe
Confidence 112235899999853 33567889999999999999998743
No 81
>PRK04266 fibrillarin; Provisional
Probab=99.41 E-value=4e-12 Score=100.31 Aligned_cols=106 Identities=16% Similarity=0.067 Sum_probs=73.5
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
..++.+|||+|||+|..++.+++.. .+|+++|. ++|++.+.++++.. .++.+...|..+....
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--------------~nv~~i~~D~~~~~~~ 135 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--------------KNIIPILADARKPERY 135 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--------------CCcEEEECCCCCcchh
Confidence 3467899999999999999999873 47999999 78998887776532 2456665454332111
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL 183 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~ 183 (205)
.....+||+|++.- -.+.....+++.+.+.|+|||.++++.+.
T Consensus 136 ~~l~~~~D~i~~d~--~~p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 136 AHVVEKVDVIYQDV--AQPNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred hhccccCCEEEECC--CChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 11234699998631 11222345689999999999999996443
No 82
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.41 E-value=4.4e-13 Score=92.69 Aligned_cols=92 Identities=25% Similarity=0.304 Sum_probs=71.4
Q ss_pred EEEeCCCccHHHHHHHHhC-----CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 68 VIELGAGCGVAGFGMALLG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 68 VLdlGcGtGl~sl~~a~~g-----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
|||+|||+|.....+++.. .+++++|+ ++|++.++++.+..+. ++++...|..+. ...
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-------------~~~~~~~D~~~l---~~~ 64 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-------------KVRFVQADARDL---PFS 64 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-------------TSEEEESCTTCH---HHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-------------ceEEEECCHhHC---ccc
Confidence 7999999999999999874 67999999 8899999998876432 578888776553 334
Q ss_pred CCCccEEEEccc-ccC--CcChHhHHHHHHHhhCCCc
Q 028673 142 APPFDYIIGTDV-VYA--EHLLEPLLQTIFALSGPKT 175 (205)
Q Consensus 142 ~~~fD~Ii~~d~-~y~--~~~~~~ll~~~~~~l~~~g 175 (205)
.++||+|+++.. +.+ .+....+++.+.++++|||
T Consensus 65 ~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 65 DGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 669999999544 544 3467799999999999987
No 83
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.41 E-value=2.5e-12 Score=101.11 Aligned_cols=99 Identities=21% Similarity=0.291 Sum_probs=77.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
.++++|||+|||+|..+..++..+.+|+++|+ +++++.+++++..++. ..++.+...++.+..
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~~~----- 117 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDV-----------AGNVEFEVNDLLSLC----- 117 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECChhhCC-----
Confidence 46789999999999999999999889999999 8899999998876632 235777775554432
Q ss_pred CCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEE
Q 028673 142 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTIL 178 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~ 178 (205)
++||+|++++++++. .....+++.+.+++++++.+.
T Consensus 118 -~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 118 -GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred -CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 689999999998664 345677888888887654433
No 84
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.40 E-value=8.7e-12 Score=101.11 Aligned_cols=120 Identities=19% Similarity=0.267 Sum_probs=87.7
Q ss_pred ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCC
Q 028673 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (205)
Q Consensus 40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (205)
+.+..+.+++... ....++.+|||+|||+|.+++.++... .+|+++|+ +.+++.+++|+..+
T Consensus 91 ~~te~l~~~~~~~-------~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~-------- 155 (275)
T PRK09328 91 PETEELVEWALEA-------LLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG-------- 155 (275)
T ss_pred CCcHHHHHHHHHh-------ccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC--------
Confidence 3455666666532 123356789999999999999999875 57999999 78999999998822
Q ss_pred CCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc--------------------------ChHhHHHHHHHh
Q 028673 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFAL 170 (205)
Q Consensus 117 ~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------~~~~ll~~~~~~ 170 (205)
...++.+...|+.+.. ...+||+|++++++.... .+..+++.+.++
T Consensus 156 ----~~~~i~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~ 227 (275)
T PRK09328 156 ----LGARVEFLQGDWFEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRY 227 (275)
T ss_pred ----CCCcEEEEEccccCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHh
Confidence 1246788887774432 146899999987754321 134677777899
Q ss_pred hCCCcEEEEEEe
Q 028673 171 SGPKTTILVMFS 182 (205)
Q Consensus 171 l~~~g~~~i~~~ 182 (205)
|+|||.+++...
T Consensus 228 Lk~gG~l~~e~g 239 (275)
T PRK09328 228 LKPGGWLLLEIG 239 (275)
T ss_pred cccCCEEEEEEC
Confidence 999999998664
No 85
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.40 E-value=9.6e-12 Score=97.31 Aligned_cols=100 Identities=18% Similarity=0.164 Sum_probs=76.5
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
..++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++|++.++. .++++...|..+.. .
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~---~ 140 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGL------------HNVSVRHGDGWKGW---P 140 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC------------CceEEEECCcccCC---C
Confidence 346789999999999999988888778999999 8899999999987743 34677665543221 1
Q ss_pred CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
...+||+|++...+ ..+.+.+.+.|+|||.+++...
T Consensus 141 ~~~~fD~I~~~~~~------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 AYAPFDRILVTAAA------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCCCcCEEEEccCc------hhhhHHHHHhcCCCcEEEEEEc
Confidence 23689999987533 3345667889999999988776
No 86
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.40 E-value=6.6e-12 Score=103.55 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=83.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
++.+|||+|||+|..++.+++.. .+++++|.+++++.+++|++..+. .+++++...|..+..
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl-----------~~rv~~~~~d~~~~~----- 212 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV-----------ADRMRGIAVDIYKES----- 212 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCc-----------cceEEEEecCccCCC-----
Confidence 45799999999999999999885 479999998899999999988753 357888886654321
Q ss_pred CCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEe
Q 028673 142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.+.+|+|+.+.++|+... ...+++.+.+.|+|||++++...
T Consensus 213 ~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 213 YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 134799999988886543 45799999999999999999865
No 87
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.39 E-value=6.8e-12 Score=98.19 Aligned_cols=127 Identities=17% Similarity=0.080 Sum_probs=83.6
Q ss_pred cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccC---C
Q 028673 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQM---N 116 (205)
Q Consensus 41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~---~ 116 (205)
....|.+++... ...++.+|||+|||.|.-++.+|.+|.+|+++|+ +.+++.+.. .++...... +
T Consensus 19 p~~~l~~~~~~l--------~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~ 87 (213)
T TIGR03840 19 VNPLLVKHWPAL--------GLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGE 87 (213)
T ss_pred CCHHHHHHHHhh--------CCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceecccc
Confidence 456777777542 1125679999999999999999999999999999 778886532 222110000 0
Q ss_pred CCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEEE
Q 028673 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 117 ~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
.+.....++++...|..+... ...++||.|+...++.+ .+..+..++.+.++|+|||.+++.
T Consensus 88 ~~~~~~~~v~~~~~D~~~~~~--~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 88 FTRYRAGNIEIFCGDFFALTA--ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred ceeeecCceEEEEccCCCCCc--ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 000113457777766655431 11357999998776654 344567899999999999974444
No 88
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.39 E-value=8.6e-12 Score=103.90 Aligned_cols=108 Identities=18% Similarity=0.122 Sum_probs=84.2
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
.++.+|||.|||||.+.+.++..+++|+++|+ +.|++.++.|++.++. .++++...|..+. +..
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~------------~~i~~~~~D~~~l---~~~ 245 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGI------------EDFFVKRGDATKL---PLS 245 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCC------------CCCeEEecchhcC---Ccc
Confidence 35779999999999999999999999999999 7899999999988754 2356666554433 222
Q ss_pred CCCccEEEEcccccCC---------cChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 142 APPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
..+||+|++++++-.. .....+++.+.+.|+|||.+++..+.+.
T Consensus 246 ~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 246 SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 4689999998765321 1257889999999999999998887653
No 89
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.37 E-value=6e-12 Score=110.20 Aligned_cols=105 Identities=20% Similarity=0.298 Sum_probs=79.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
++.+|||+|||+|.+++.+++. +++|+++|+ +++++.+++|+..++. .+++.+...|+.+..
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-----------~~~v~~~~~D~~~~~---- 202 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-----------TDRIQIIHSNWFENI---- 202 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----------ccceeeeecchhhhC----
Confidence 3468999999999999988865 568999999 7899999999988753 346778777764321
Q ss_pred CCCCccEEEEcccccCCcC--------------------------hHhHHHHHHHhhCCCcEEEEEEee
Q 028673 141 VAPPFDYIIGTDVVYAEHL--------------------------LEPLLQTIFALSGPKTTILVMFSL 183 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~~--------------------------~~~ll~~~~~~l~~~g~~~i~~~~ 183 (205)
...+||+|++++++..... +..+++.+.++|+|||.+++....
T Consensus 203 ~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~ 271 (506)
T PRK01544 203 EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF 271 (506)
T ss_pred cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence 1358999999887654211 234667778899999999987653
No 90
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.37 E-value=3.9e-12 Score=98.29 Aligned_cols=110 Identities=10% Similarity=-0.071 Sum_probs=81.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
...+|||||||+|..++.+++.. .+|+++|+ +++++.+++++..++. .++.+...|..+......
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l------------~ni~~i~~d~~~~~~~~~ 83 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL------------KNLHVLCGDANELLDKFF 83 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC------------CCEEEEccCHHHHHHhhC
Confidence 45689999999999999999874 46999999 7899999999887643 368888866654321112
Q ss_pred CCCCccEEEEcccccC-Cc-------ChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 141 VAPPFDYIIGTDVVYA-EH-------LLEPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~-~~-------~~~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
....+|.|+.+-+.-+ .. ..+.+++.+.+.|+|||.+++....+.
T Consensus 84 ~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 84 PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP 136 (194)
T ss_pred CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 2357999988743221 11 126799999999999999999876554
No 91
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=9.7e-12 Score=95.67 Aligned_cols=101 Identities=21% Similarity=0.257 Sum_probs=80.0
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
...++.+|||+|||+|..+-.+|+...+|+.+|. ++..+.|++|++..+. .++.+...|-... .
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~------------~nV~v~~gDG~~G---~ 133 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGY------------ENVTVRHGDGSKG---W 133 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCC------------CceEEEECCcccC---C
Confidence 4557899999999999999999999889999999 8899999999998864 4577777543333 2
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
....+||.|+.+ ...+.+-+.+.+.|++||++++-..
T Consensus 134 ~~~aPyD~I~Vt------aaa~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 134 PEEAPYDRIIVT------AAAPEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCcCEEEEe------eccCCCCHHHHHhcccCCEEEEEEc
Confidence 334699999887 3445555666778999999887765
No 92
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.35 E-value=1.3e-11 Score=101.88 Aligned_cols=105 Identities=17% Similarity=0.216 Sum_probs=73.7
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
.++.+|||+|||+|.+++.+++.|.+|+++|+ ++|++.+++++....... ....++.+...|+.+.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~-------~~~~~~~f~~~Dl~~l------ 209 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAAL-------PPEVLPKFEANDLESL------ 209 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhccccc-------ccccceEEEEcchhhc------
Confidence 46789999999999999999999999999999 789999999887542100 0012456666554321
Q ss_pred CCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEe
Q 028673 142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
+++||+|++.++++|... ...+++.+.++ .+ |.++++..
T Consensus 210 ~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~-g~liIs~~ 250 (315)
T PLN02585 210 SGKYDTVTCLDVLIHYPQDKADGMIAHLASL-AE-KRLIISFA 250 (315)
T ss_pred CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh-cC-CEEEEEeC
Confidence 468999999999876432 33566666654 44 44556554
No 93
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.35 E-value=1.9e-11 Score=92.21 Aligned_cols=103 Identities=24% Similarity=0.280 Sum_probs=82.6
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
..+|.+++|+|||||.+++.++..+. +|+++|. +++++.+++|+++.+. +++++...+ ..+.
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------------~n~~vv~g~---Ap~~ 96 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV------------DNLEVVEGD---APEA 96 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC------------CcEEEEecc---chHh
Confidence 34688999999999999999996654 6999999 8899999999999864 678888743 3222
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL 183 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~ 183 (205)
.....+||.|+...- ..++.+++.+...|+|||++++..-.
T Consensus 97 L~~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 97 LPDLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred hcCCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 212237999998743 68899999999999999999887653
No 94
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.35 E-value=1.1e-12 Score=100.38 Aligned_cols=111 Identities=26% Similarity=0.316 Sum_probs=81.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Ccc
Q 028673 63 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIK 139 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~~ 139 (205)
++|.+||||.||||.+|+.+..+|++ |+++|. +.++..+++|++.-+. .+++.+...|....- ...
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----------~~~~~v~~~d~~~~l~~~~ 109 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----------EDKIRVIKGDAFKFLLKLA 109 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------------GGGEEEEESSHHHHHHHHH
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----------CcceeeeccCHHHHHHhhc
Confidence 58999999999999999999999985 999999 7899999999987653 235666664432221 111
Q ss_pred cCCCCccEEEEcccccCCcC-hHhHHHHHH--HhhCCCcEEEEEEeecc
Q 028673 140 AVAPPFDYIIGTDVVYAEHL-LEPLLQTIF--ALSGPKTTILVMFSLSM 185 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~-~~~ll~~~~--~~l~~~g~~~i~~~~r~ 185 (205)
....+||+|++ |+-|.... .+.+++.+. .+|+++|.+++.+..+.
T Consensus 110 ~~~~~fDiIfl-DPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~ 157 (183)
T PF03602_consen 110 KKGEKFDIIFL-DPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKKE 157 (183)
T ss_dssp HCTS-EEEEEE---STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETTS
T ss_pred ccCCCceEEEE-CCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCCC
Confidence 13579999988 67777776 488999887 57899999999988774
No 95
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.35 E-value=3.3e-11 Score=93.19 Aligned_cols=104 Identities=20% Similarity=0.278 Sum_probs=77.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
++.+|||+|||+|..++.+++. +.+|+++|. +++++.+++|++.++. .++++...|..+. ...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~------------~~v~~~~~d~~~~--~~~ 105 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV------------KNVEVIEGSAPEC--LAQ 105 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CCeEEEECchHHH--Hhh
Confidence 5789999999999999999875 467999999 8899999999988753 3567766554321 111
Q ss_pred CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
....+|.++.. ....++.+++.+.++|+|||.+++......
T Consensus 106 ~~~~~d~v~~~----~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 146 (196)
T PRK07402 106 LAPAPDRVCIE----GGRPIKEILQAVWQYLKPGGRLVATASSLE 146 (196)
T ss_pred CCCCCCEEEEE----CCcCHHHHHHHHHHhcCCCeEEEEEeecHH
Confidence 12346766542 234568999999999999999998876543
No 96
>PRK05785 hypothetical protein; Provisional
Probab=99.34 E-value=1.8e-11 Score=96.76 Aligned_cols=88 Identities=16% Similarity=0.238 Sum_probs=70.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
.+.+|||+|||||..+..+++. +.+|+++|. ++|++.++.. . .....+.. .++..
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---~-----------------~~~~~d~~---~lp~~ 107 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---D-----------------DKVVGSFE---ALPFR 107 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---c-----------------ceEEechh---hCCCC
Confidence 3679999999999999999988 678999999 7899987753 1 11232222 23344
Q ss_pred CCCccEEEEcccccCCcChHhHHHHHHHhhCCC
Q 028673 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK 174 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~ 174 (205)
+++||+|+++..+++..+.+.+++.+.+.|+|.
T Consensus 108 d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 108 DKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 679999999999999899999999999999994
No 97
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.34 E-value=3.5e-11 Score=104.06 Aligned_cols=125 Identities=15% Similarity=0.143 Sum_probs=90.2
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCC
Q 028673 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (205)
Q Consensus 42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (205)
+..|.+.+.... ...++.+|||+|||+|.+++.+++.+.+|+++|. ++|++.+++|++.|+.
T Consensus 282 ~e~l~~~vl~~l-------~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~---------- 344 (443)
T PRK13168 282 NQKMVARALEWL-------DPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL---------- 344 (443)
T ss_pred HHHHHHHHHHHh-------cCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC----------
Confidence 445555555431 2335679999999999999999999989999999 7899999999998864
Q ss_pred CCCceEEEEeecCCCCC-cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673 121 LLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT 189 (205)
Q Consensus 121 ~~~~i~~~~~dw~~~~~-~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~ 189 (205)
.++++...|+.+... ......+||+|+++++ |.. ....++.+.+ ++|++.+|++........+
T Consensus 345 --~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPP-r~g--~~~~~~~l~~-~~~~~ivyvSCnp~tlaRD 408 (443)
T PRK13168 345 --DNVTFYHANLEEDFTDQPWALGGFDKVLLDPP-RAG--AAEVMQALAK-LGPKRIVYVSCNPATLARD 408 (443)
T ss_pred --CceEEEEeChHHhhhhhhhhcCCCCEEEECcC-CcC--hHHHHHHHHh-cCCCeEEEEEeChHHhhcc
Confidence 358888887754321 1112357999998655 432 3456666666 5889999999875555443
No 98
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.34 E-value=9.9e-12 Score=108.34 Aligned_cols=103 Identities=21% Similarity=0.159 Sum_probs=79.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
++++|||+|||+|..+..+++.+.+|+++|+ +++++.++. .+. ...++.+...+..... .+...
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~-----------~~~~i~~~~~d~~~~~-~~~~~ 101 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---ING-----------HYKNVKFMCADVTSPD-LNISD 101 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---Hhc-----------cCCceEEEEecccccc-cCCCC
Confidence 5679999999999999999999889999999 778765443 221 1246777776664322 22235
Q ss_pred CCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEE
Q 028673 143 PPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
.+||+|+++.++++... ...+++.+.+.|+|||.+++..
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 68999999999987654 5789999999999999998864
No 99
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.32 E-value=5.4e-11 Score=93.18 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=82.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC---EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
++.+|||+|||+|..+..+++.+. +++++|. +.+++.++++... ..++.+...+..+..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~--------------~~~i~~~~~d~~~~~--- 101 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL--------------PLNIEFIQADAEALP--- 101 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc--------------CCCceEEecchhcCC---
Confidence 678999999999999999887754 7999999 7788888877651 134667665554432
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL 183 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~ 183 (205)
...++||+|+++..+.+......+++.+.++|+|||.+++....
T Consensus 102 ~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 102 FEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 22458999999988888888999999999999999999987653
No 100
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.32 E-value=7.5e-12 Score=101.59 Aligned_cols=106 Identities=23% Similarity=0.321 Sum_probs=83.9
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 60 ~~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
..++.++.|||+|||+|+++..+++.|++ |++++.++|.+.+++-++.|.. .++|.++.....+.+
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~-----------~~rItVI~GKiEdie-- 239 (517)
T KOG1500|consen 173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNL-----------ADRITVIPGKIEDIE-- 239 (517)
T ss_pred ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCc-----------cceEEEccCcccccc--
Confidence 57899999999999999999999999996 9999999999999999998843 578999995555543
Q ss_pred ccCCCCccEEEEcccccC---CcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 139 KAVAPPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~---~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
.+++.|+||+-+.-|. +..++.-+- .++.|+|+|..+-..
T Consensus 240 --LPEk~DviISEPMG~mL~NERMLEsYl~-Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 240 --LPEKVDVIISEPMGYMLVNERMLESYLH-ARKWLKPNGKMFPTV 282 (517)
T ss_pred --CchhccEEEeccchhhhhhHHHHHHHHH-HHhhcCCCCcccCcc
Confidence 4679999998765554 333333322 347899999877553
No 101
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.31 E-value=5.1e-11 Score=98.70 Aligned_cols=109 Identities=14% Similarity=0.087 Sum_probs=82.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
++.+|||+|||+|.+++.+++.+.+|+++|. +++++.+++|++.|+. .++++...|..+... ...
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l------------~~v~~~~~D~~~~~~--~~~ 238 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL------------TNVQFQALDSTQFAT--AQG 238 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEEcCHHHHHH--hcC
Confidence 5689999999999999999999989999999 8899999999999864 367887766544321 123
Q ss_pred CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT 189 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~ 189 (205)
.+||+|+.+++ .......+++.+.+ ++|+..+|++........+
T Consensus 239 ~~~D~Vv~dPP--r~G~~~~~~~~l~~-~~~~~ivyvsc~p~t~~rd 282 (315)
T PRK03522 239 EVPDLVLVNPP--RRGIGKELCDYLSQ-MAPRFILYSSCNAQTMAKD 282 (315)
T ss_pred CCCeEEEECCC--CCCccHHHHHHHHH-cCCCeEEEEECCcccchhH
Confidence 47999999877 23445566666555 5688889988776555444
No 102
>PRK06922 hypothetical protein; Provisional
Probab=99.31 E-value=1.4e-11 Score=108.81 Aligned_cols=106 Identities=19% Similarity=0.204 Sum_probs=79.5
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
.++.+|||+|||+|..+..+++. +.+|+++|+ +.|++.++++...++ .++.+...|..+... .
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-------------~~ie~I~gDa~dLp~-~ 482 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-------------RSWNVIKGDAINLSS-S 482 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-------------CCeEEEEcchHhCcc-c
Confidence 35789999999999998888875 458999999 779999998865542 245555544433221 1
Q ss_pred cCCCCccEEEEcccccCC-------------cChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 140 AVAPPFDYIIGTDVVYAE-------------HLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~-------------~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
..+++||+|+++.++++. .....+++.+.+.|+|||.+++...
T Consensus 483 fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 483 FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 235689999998877532 3457889999999999999999864
No 103
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.31 E-value=3.5e-11 Score=94.55 Aligned_cols=125 Identities=18% Similarity=0.065 Sum_probs=82.6
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccC---CC
Q 028673 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQM---NP 117 (205)
Q Consensus 42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~---~~ 117 (205)
...|.+|+... ...++.+|||+|||.|.-++.+|.+|.+|+++|+ +.+++.+.. .++...... ..
T Consensus 23 ~~~L~~~~~~~--------~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~ 91 (218)
T PRK13255 23 NPLLQKYWPAL--------ALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEF 91 (218)
T ss_pred CHHHHHHHHhh--------CCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccc
Confidence 55667776532 1224679999999999999999999999999999 778886532 232210000 00
Q ss_pred CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEE
Q 028673 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILV 179 (205)
Q Consensus 118 ~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i 179 (205)
......++++...|..+... .....||.|+..-++.+ .+..+..++.+.++|+|||+.++
T Consensus 92 ~~~~~~~v~~~~~D~~~l~~--~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 92 EHYQAGEITIYCGDFFALTA--ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred cccccCceEEEECcccCCCc--ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 01123456766655554421 11357999998776654 34567889999999999997444
No 104
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.31 E-value=2.1e-11 Score=96.28 Aligned_cols=94 Identities=20% Similarity=0.276 Sum_probs=71.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
.++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++++...+. .+++.+...++.. .
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~------~ 124 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGL-----------AGNITFEVGDLES------L 124 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccCcEEEEcCchh------c
Confidence 35679999999999999999999999999999 7899999998876532 2356777755322 2
Q ss_pred CCCccEEEEcccccCC--cChHhHHHHHHHhhCC
Q 028673 142 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGP 173 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~ 173 (205)
.++||+|++++++++. .....+++.+.+++++
T Consensus 125 ~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~ 158 (230)
T PRK07580 125 LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRG 158 (230)
T ss_pred cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCC
Confidence 4689999999998653 3455677777776643
No 105
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.30 E-value=1.9e-11 Score=99.14 Aligned_cols=156 Identities=22% Similarity=0.181 Sum_probs=101.3
Q ss_pred EEEEEcCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEE
Q 028673 14 INLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITT 92 (205)
Q Consensus 14 ~~~~~~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~ 92 (205)
..++-.|..+.+.-. .+-.||..+. -...-+++... .+|++||++-|-||..|+.+++.|| +|+.+
T Consensus 86 ~~v~E~gl~f~v~l~-~gqktGlFlD--qR~nR~~v~~~----------~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~V 152 (286)
T PF10672_consen 86 FTVEENGLKFRVDLT-DGQKTGLFLD--QRENRKWVRKY----------AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSV 152 (286)
T ss_dssp EEEEETTEEEEEESS-SSSSTSS-GG--GHHHHHHHHHH----------CTTCEEEEET-TTTHHHHHHHHTTESEEEEE
T ss_pred eEEEECCEEEEEEcC-CCCcceEcHH--HHhhHHHHHHH----------cCCCceEEecCCCCHHHHHHHHCCCCEEEEE
Confidence 344444544444322 2556776544 22233444332 2689999999999999999999998 59999
Q ss_pred cC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc------ChHhHHH
Q 028673 93 DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH------LLEPLLQ 165 (205)
Q Consensus 93 D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~------~~~~ll~ 165 (205)
|. ..+++.+++|++.|+.. ..++++...|.-+.-.......+||+||+-++-|... .+..++.
T Consensus 153 D~S~~al~~a~~N~~lNg~~----------~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~ 222 (286)
T PF10672_consen 153 DSSKRALEWAKENAALNGLD----------LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLR 222 (286)
T ss_dssp ES-HHHHHHHHHHHHHTT-C----------CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHcCCC----------ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 99 67999999999999752 2467777755433211111245899999988877643 4567888
Q ss_pred HHHHhhCCCcEEEEEEeeccchhHHHH
Q 028673 166 TIFALSGPKTTILVMFSLSMFSLTFFC 192 (205)
Q Consensus 166 ~~~~~l~~~g~~~i~~~~r~~~~~~~~ 192 (205)
.+.++++|||.++++......+.++|.
T Consensus 223 ~a~~ll~~gG~l~~~scs~~i~~~~l~ 249 (286)
T PF10672_consen 223 RAMKLLKPGGLLLTCSCSHHISPDFLL 249 (286)
T ss_dssp HHHHTEEEEEEEEEEE--TTS-HHHHH
T ss_pred HHHHhcCCCCEEEEEcCCcccCHHHHH
Confidence 888999999999999888777766543
No 106
>PRK06202 hypothetical protein; Provisional
Probab=99.29 E-value=3e-11 Score=95.80 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=73.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHh----C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALL----G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~----g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
++.+|||+|||+|.++..+++. | .+|+++|. ++|++.++++...++ +.+...+-....
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---------------~~~~~~~~~~l~ 124 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG---------------VTFRQAVSDELV 124 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC---------------CeEEEEeccccc
Confidence 5579999999999998888753 3 47999999 889999988755432 333333322222
Q ss_pred CcccCCCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 137 HIKAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 137 ~~~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
..+++||+|+++.++++... ...+++.+.+.++ |.+++..-.|.
T Consensus 125 ---~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 125 ---AEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred ---ccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 23568999999999988665 3578888888887 56666665555
No 107
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.29 E-value=3.5e-11 Score=81.74 Aligned_cols=100 Identities=21% Similarity=0.264 Sum_probs=78.5
Q ss_pred eEEEeCCCccHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673 67 RVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (205)
Q Consensus 67 ~VLdlGcGtGl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~ 144 (205)
+|+|+|||+|..+..+++ .+.+++++|. ++++..++++...+. ..++.+...++.+... ...++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~ 66 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------------ADNVEVLKGDAEELPP--EADES 66 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc------------ccceEEEEcChhhhcc--ccCCc
Confidence 589999999999998887 4557999999 677777775333332 2457777766665532 13568
Q ss_pred ccEEEEcccccC-CcChHhHHHHHHHhhCCCcEEEEE
Q 028673 145 FDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 145 fD~Ii~~d~~y~-~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
||+|+++.++++ ......+++.+.+.++++|.+++.
T Consensus 67 ~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 67 FDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 999999999988 888899999999999999999887
No 108
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.29 E-value=6.6e-11 Score=100.17 Aligned_cols=109 Identities=11% Similarity=0.061 Sum_probs=84.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
.+.+|||||||+|.+++.++..+.+|+++|+ +++++.+++|++.|+. +++++...|..+... ...
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~------------~~~~~~~~d~~~~~~--~~~ 298 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL------------DNLSFAALDSAKFAT--AQM 298 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHHHH--hcC
Confidence 4678999999999999999998989999999 8899999999999864 367787766543221 112
Q ss_pred CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT 189 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~ 189 (205)
.+||+|+..++ | ....+.+++.+.+ ++|++.+|++........+
T Consensus 299 ~~~D~vi~DPP-r-~G~~~~~l~~l~~-~~p~~ivyvsc~p~TlaRD 342 (374)
T TIGR02085 299 SAPELVLVNPP-R-RGIGKELCDYLSQ-MAPKFILYSSCNAQTMAKD 342 (374)
T ss_pred CCCCEEEECCC-C-CCCcHHHHHHHHh-cCCCeEEEEEeCHHHHHHH
Confidence 46999999766 4 3566777777765 6899999999875555444
No 109
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.29 E-value=4.4e-11 Score=93.10 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=68.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
++.+|||+|||+|..+..+++. +.+++++|+ +++++.++++.. ++.+...+..+ +.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------------~~~~~~~d~~~----~~ 101 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------------NINIIQGSLFD----PF 101 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------------CCcEEEeeccC----CC
Confidence 5678999999999999999876 578999999 789999887532 23445544433 12
Q ss_pred CCCCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEE
Q 028673 141 VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
.+++||+|+++.++++.. ....+++.+.+.+ ++.++++.
T Consensus 102 ~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 102 KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 356899999999998753 3455666666665 34555543
No 110
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.28 E-value=4.2e-12 Score=94.79 Aligned_cols=128 Identities=24% Similarity=0.312 Sum_probs=90.2
Q ss_pred ccc---ccHHHHHHHHhhhccCCCCCCCCCCC-CeEEEeCCCccHHHHHHHHhCCE--EEEEcC-cchHHHHHHHHHHhh
Q 028673 37 TVW---DASVVFVKYLEKNCRKGRFCPSKLKG-KRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNT 109 (205)
Q Consensus 37 ~~W---~~~~~La~~l~~~~~~~~~~~~~~~~-~~VLdlGcGtGl~sl~~a~~g~~--v~~~D~-~~~l~~~~~n~~~n~ 109 (205)
.+| ++...+.+|+.......+ ..+. .+|||||||.|.+-..+++.|.+ .+++|+ +.++++|+.-+++++
T Consensus 40 EvWFg~~ae~riv~wl~d~~~~~r----v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~ 115 (227)
T KOG1271|consen 40 EVWFGEDAEERIVDWLKDLIVISR----VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG 115 (227)
T ss_pred ceecCCcHHHHHHHHHHhhhhhhh----hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC
Confidence 556 556778888877642111 1122 39999999999999999998864 999999 779999776666665
Q ss_pred hhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC--------cChHhHHHHHHHhhCCCcEEEEEE
Q 028673 110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--------HLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 110 ~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~--------~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
. .+.|.+.++|..++. ....+||+|+--..+-.. .-+..-+..+.++|+|||+++|..
T Consensus 116 ~-----------~n~I~f~q~DI~~~~---~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 116 F-----------SNEIRFQQLDITDPD---FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS 181 (227)
T ss_pred C-----------CcceeEEEeeccCCc---ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence 4 345999999988763 235678888644333221 112345678889999999999886
Q ss_pred e
Q 028673 182 S 182 (205)
Q Consensus 182 ~ 182 (205)
.
T Consensus 182 C 182 (227)
T KOG1271|consen 182 C 182 (227)
T ss_pred c
Confidence 5
No 111
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.28 E-value=3.7e-11 Score=95.45 Aligned_cols=104 Identities=14% Similarity=0.077 Sum_probs=79.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-c
Q 028673 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~-~ 138 (205)
+.++|||+|||+|..++.++.. +.+|+++|. +++++.+++|++.++. .+++++...+..+.-. +
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----------~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----------DHKINFIQSDALSALDQL 136 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEccHHHHHHHH
Confidence 5789999999999988888764 357999999 8899999999999865 3578888866654311 1
Q ss_pred c--cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 139 K--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 139 ~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
. ...++||+|+.. -....+..+++.+.++++|||.+++-.
T Consensus 137 ~~~~~~~~fD~VfiD---a~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 137 LNNDPKPEFDFAFVD---ADKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HhCCCCCCCCEEEEC---CCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 1 114589999885 224566788899999999999877643
No 112
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=9.8e-13 Score=104.85 Aligned_cols=162 Identities=21% Similarity=0.254 Sum_probs=107.4
Q ss_pred CCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHH-HHHHHHH
Q 028673 30 NSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLP-LLKRNVE 106 (205)
Q Consensus 30 ~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~-~~~~n~~ 106 (205)
+....|.++|.|+..|..++.... .. .-.+.+++|||||||+|++++.+.+.|+ ++.+.|+ .+.++ ..-.|+.
T Consensus 86 ~vyEGg~k~wecS~dl~~~l~~e~-~~---~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~ 161 (282)
T KOG2920|consen 86 GVYEGGLKLWECSVDLLPYLKEEI-GA---QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNIL 161 (282)
T ss_pred ceeecceEEeecHHHHHHHHHHHh-hh---heEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeeccccee
Confidence 345789999999999999998542 00 2356789999999999999999999995 6999999 56653 2223333
Q ss_pred HhhhhhccCCCCCCCCCceEEEEe---ecCCCCCcccCCCCccEEEEcccccCCcChHhH-HHHHHHhhCCCcEEEEEEe
Q 028673 107 WNTSRISQMNPGSDLLGSIQAVEL---DWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL-LQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 107 ~n~~~~~~~~~~~~~~~~i~~~~~---dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l-l~~~~~~l~~~g~~~i~~~ 182 (205)
.|...-.+.+ +......+..- ||..... ...+||+|+++.++|.....+.+ ......+++++|.++++..
T Consensus 162 ~~~~~~~~~~---e~~~~~~i~~s~l~dg~~~~t---~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK 235 (282)
T KOG2920|consen 162 VNSHAGVEEK---ENHKVDEILNSLLSDGVFNHT---ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAK 235 (282)
T ss_pred cchhhhhhhh---hcccceeccccccccchhhhc---cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhH
Confidence 3321100000 00011112222 4522210 01389999999999999998888 6666777899999999988
Q ss_pred eccchh----HHHHHHhhhccCc
Q 028673 183 LSMFSL----TFFCWTRITADNT 201 (205)
Q Consensus 183 ~r~~~~----~~~~~~~~~~~~~ 201 (205)
.-++.. ..|.|+.+..++.
T Consensus 236 ~~yFgVgg~i~~f~~~~~~~~d~ 258 (282)
T KOG2920|consen 236 KLYFGVGGGIEEFNSKLMFDEDV 258 (282)
T ss_pred hhccCcCcchhhhcccccccCCc
Confidence 777754 3455555555443
No 113
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.28 E-value=2e-11 Score=92.53 Aligned_cols=112 Identities=24% Similarity=0.330 Sum_probs=82.7
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
.+.|.+||||-||+|.+|+.+..+|+. ++++|. ..++..+++|++.-+. ..+.++...|-...-...
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-----------~~~~~~~~~da~~~L~~~ 109 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-----------EGEARVLRNDALRALKQL 109 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----------ccceEEEeecHHHHHHhc
Confidence 478999999999999999999999986 999999 7899999999887642 245566554433110011
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHH----HhhCCCcEEEEEEeecc
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIF----ALSGPKTTILVMFSLSM 185 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~----~~l~~~g~~~i~~~~r~ 185 (205)
...++||+|+. |+-|.....+.....+. .+|+|++.+++......
T Consensus 110 ~~~~~FDlVfl-DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~ 158 (187)
T COG0742 110 GTREPFDLVFL-DPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKDV 158 (187)
T ss_pred CCCCcccEEEe-CCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCCc
Confidence 11235999998 78888777754444444 56999999999888663
No 114
>PLN02672 methionine S-methyltransferase
Probab=99.27 E-value=7.9e-11 Score=109.75 Aligned_cols=140 Identities=19% Similarity=0.121 Sum_probs=94.8
Q ss_pred ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhcc--
Q 028673 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQ-- 114 (205)
Q Consensus 40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~-- 114 (205)
+.+..|.+.+.... ...+++++|||||||+|.+++.+++.. ++|+++|+ +++++.+++|++.|+..-..
T Consensus 100 peTE~lve~L~~~~------~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~ 173 (1082)
T PLN02672 100 DWSFTFYEGLNRHP------DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLP 173 (1082)
T ss_pred hhHHHHHHHHHhcc------cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccc
Confidence 34667777754321 123456799999999999999999874 47999999 88999999999998531000
Q ss_pred --CCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcC---------------------------------
Q 028673 115 --MNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------------------- 159 (205)
Q Consensus 115 --~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~--------------------------------- 159 (205)
........+++.+...||.+.. .....+||+||+|+++-....
T Consensus 174 ~~~~~~~~l~~rV~f~~sDl~~~~--~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~ 251 (1082)
T PLN02672 174 VYDGEGKTLLDRVEFYESDLLGYC--RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQ 251 (1082)
T ss_pred ccccccccccccEEEEECchhhhc--cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCC
Confidence 0000012346888888886542 111236999999988532110
Q ss_pred -----hHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673 160 -----LEPLLQTIFALSGPKTTILVMFSLSMFS 187 (205)
Q Consensus 160 -----~~~ll~~~~~~l~~~g~~~i~~~~r~~~ 187 (205)
+..++....++|+|||.+++....+...
T Consensus 252 dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~ 284 (1082)
T PLN02672 252 FGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQ 284 (1082)
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEEECccHHH
Confidence 1456677778899999999888755543
No 115
>PHA03412 putative methyltransferase; Provisional
Probab=99.26 E-value=5e-11 Score=93.66 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=66.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-----CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALL-----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~-----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
.+.+|||+|||+|.+++.+++. ..+|+++|+ +.+++.+++|+. ++.+...|.....
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----------------~~~~~~~D~~~~~- 110 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----------------EATWINADALTTE- 110 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----------------CCEEEEcchhccc-
Confidence 3679999999999999999874 347999999 789999998753 2345554443221
Q ss_pred cccCCCCccEEEEcccccCCc------------ChHhHHHHHHHhhCCCcE
Q 028673 138 IKAVAPPFDYIIGTDVVYAEH------------LLEPLLQTIFALSGPKTT 176 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~~y~~~------------~~~~ll~~~~~~l~~~g~ 176 (205)
...+||+||+|++++... .+..+++...+++++|+.
T Consensus 111 ---~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 111 ---FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ---ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 245899999999998421 144578888886766664
No 116
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=1.1e-10 Score=100.57 Aligned_cols=105 Identities=21% Similarity=0.226 Sum_probs=77.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
+|.+|||+|||+|..++.++..+ .+|+++|. +++++.+++|++.++. .+.+...|..+.... .
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-------------~~~~~~~D~~~~~~~-~ 309 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-------------KATVIVGDARDPAQW-W 309 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-------------CeEEEEcCcccchhh-c
Confidence 67899999999999999999875 47999999 7899999999998854 245555554432211 1
Q ss_pred CCCCccEEEEcccccCCc----------------------ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 141 VAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~----------------------~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
...+||.|++..+..... ....+++.+.++|+|||.++++..
T Consensus 310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 245799999765543210 123688888999999999988764
No 117
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=6.1e-12 Score=90.59 Aligned_cols=107 Identities=21% Similarity=0.315 Sum_probs=79.7
Q ss_pred CeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cch
Q 028673 20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEV 97 (205)
Q Consensus 20 ~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~ 97 (205)
...+.++|+++..+.. ..+..-+... ..+++|++++|||||+|.+++..+..+.+ |+++|+ |++
T Consensus 18 Kpk~~LEQY~T~p~iA-------asM~~~Ih~T-------ygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeA 83 (185)
T KOG3420|consen 18 KPKLLLEQYPTRPHIA-------ASMLYTIHNT-------YGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEA 83 (185)
T ss_pred ccchhhhhCCCcHHHH-------HHHHHHHHhh-------hccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHH
Confidence 3466778888654433 1233334333 46789999999999999999999888887 999999 899
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC
Q 028673 98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA 156 (205)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~ 156 (205)
++.+.+|++.-.+ ++++.+.+..+.. .....||..+.++++--
T Consensus 84 LEIf~rNaeEfEv-------------qidlLqcdildle---~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 84 LEIFTRNAEEFEV-------------QIDLLQCDILDLE---LKGGIFDTAVINPPFGT 126 (185)
T ss_pred HHHHhhchHHhhh-------------hhheeeeeccchh---ccCCeEeeEEecCCCCc
Confidence 9999999987643 4566666666554 23478999999988754
No 118
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=9.6e-11 Score=101.37 Aligned_cols=105 Identities=18% Similarity=0.137 Sum_probs=78.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
++.+|||+|||+|..++.+++. +.+|+++|+ +++++.+++|++.++. .++.+...|..+...
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~~~-- 315 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------------TNIETKALDARKVHE-- 315 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCCcccccc--
Confidence 5789999999999999999875 357999999 7899999999998864 247777766554321
Q ss_pred cCCCCccEEEEcccccCCcC----------------------hHhHHHHHHHhhCCCcEEEEEEe
Q 028673 140 AVAPPFDYIIGTDVVYAEHL----------------------LEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~----------------------~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
....+||+|++..+.+.... ...+++.+.++|+|||.++.+..
T Consensus 316 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 316 KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 11258999998655332111 13578888999999999886543
No 119
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.25 E-value=4.8e-11 Score=90.90 Aligned_cols=114 Identities=15% Similarity=0.017 Sum_probs=86.5
Q ss_pred eEEEeCCCccHHHHHH-HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceE-EEEeecCCCCCcccCCC
Q 028673 67 RVIELGAGCGVAGFGM-ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQ-AVELDWGNEDHIKAVAP 143 (205)
Q Consensus 67 ~VLdlGcGtGl~sl~~-a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~-~~~~dw~~~~~~~~~~~ 143 (205)
.|||+|||||..=-+. .+.+.+||++|- +.|-+.+.+.++.+.. .++. +...+-.+..+ ..+.
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~------------~~~~~fvva~ge~l~~--l~d~ 144 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP------------LQVERFVVADGENLPQ--LADG 144 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC------------cceEEEEeechhcCcc--cccC
Confidence 5899999999643333 245789999999 7799999999888843 2333 44433333332 2468
Q ss_pred CccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH-HHHHH
Q 028673 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT-FFCWT 194 (205)
Q Consensus 144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~-~~~~~ 194 (205)
++|.|++.-++...++....++.+.++|+|||++++..+.+.+... .+.|+
T Consensus 145 s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q 196 (252)
T KOG4300|consen 145 SYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQ 196 (252)
T ss_pred CeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHH
Confidence 9999999999999999999999999999999999998887766442 34553
No 120
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.25 E-value=1.7e-10 Score=99.50 Aligned_cols=107 Identities=14% Similarity=0.094 Sum_probs=81.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-CcccC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAV 141 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~~~~ 141 (205)
.+.+|||+|||+|.+++.+++.+.+|+++|. +++++.+++|++.|+. .++++...|+.+.. .....
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~------------~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI------------ANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC------------CceEEEeCCHHHHHHHHHhc
Confidence 4579999999999999999998889999999 8899999999998864 46788887664321 11112
Q ss_pred CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
..+||+|+..++- ......+++.+.+ ++|++.+|++.....
T Consensus 360 ~~~~D~vi~dPPr--~G~~~~~l~~l~~-l~~~~ivyvsc~p~t 400 (431)
T TIGR00479 360 GQIPDVLLLDPPR--KGCAAEVLRTIIE-LKPERIVYVSCNPAT 400 (431)
T ss_pred CCCCCEEEECcCC--CCCCHHHHHHHHh-cCCCEEEEEcCCHHH
Confidence 3579999986653 2445777777665 778898888865433
No 121
>PHA03411 putative methyltransferase; Provisional
Probab=99.25 E-value=5.5e-11 Score=95.42 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=73.7
Q ss_pred CCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
..+|||+|||+|.+++.++++ +.+|+++|+ +.+++.+++|.. ++.+...|..+.. .
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------------~v~~v~~D~~e~~----~ 123 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------------EAEWITSDVFEFE----S 123 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------------CCEEEECchhhhc----c
Confidence 468999999999999988876 458999999 789998887631 2455554443321 2
Q ss_pred CCCccEEEEcccccCCcC--------------------hHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 142 APPFDYIIGTDVVYAEHL--------------------LEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~--------------------~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
..+||+|++++++++... +..+++....+|+|+|.+++++..+
T Consensus 124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR 186 (279)
T ss_pred cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc
Confidence 358999999999987211 3566777788899999998887643
No 122
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.24 E-value=2.1e-10 Score=94.93 Aligned_cols=100 Identities=23% Similarity=0.198 Sum_probs=73.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
..++.+|||+|||+|..++.+++.. ..|+++|. +++++.+++|++.++. +++.+...|..+..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------------~nV~~i~gD~~~~~- 144 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------------ENVIFVCGDGYYGV- 144 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEeCChhhcc-
Confidence 3367899999999999999999764 25999999 8899999999988753 35666665433221
Q ss_pred cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
....+||+|+++. ..+.+...+.+.|+|||.+++...
T Consensus 145 --~~~~~fD~Ii~~~------g~~~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 145 --PEFAPYDVIFVTV------GVDEVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred --cccCCccEEEECC------chHHhHHHHHHhcCCCCEEEEEeC
Confidence 1235799999862 223344566788999999888653
No 123
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.23 E-value=1.7e-10 Score=90.53 Aligned_cols=108 Identities=16% Similarity=0.187 Sum_probs=85.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh--------CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeec
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALL--------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW 132 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~--------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw 132 (205)
...+.+|||++||||-+++.+.+. ..+|+..|+ ++|+...++..+..... ...++.+..
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~---------~~~~~~w~~--- 165 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK---------ASSRVEWVE--- 165 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC---------cCCceEEEe---
Confidence 336789999999999999888765 246999999 89999999887664331 122366666
Q ss_pred CCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 133 GNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 133 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
++.+.++..+..||....+--|-+..+++..+++.++.|||||++++..
T Consensus 166 ~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 166 GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 3444455667899999998888888999999999999999999988554
No 124
>PLN03075 nicotianamine synthase; Provisional
Probab=99.23 E-value=1.6e-10 Score=93.95 Aligned_cols=104 Identities=12% Similarity=0.029 Sum_probs=80.8
Q ss_pred CCCeEEEeCCCcc-HHHHHHHH-h--CCEEEEEcC-cchHHHHHHHHHH-hhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 64 KGKRVIELGAGCG-VAGFGMAL-L--GCNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 64 ~~~~VLdlGcGtG-l~sl~~a~-~--g~~v~~~D~-~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
..++|+|+|||.| +.++.++. + +.+++++|. +++++.++++++. .+ ..+++++...|..+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g-----------L~~rV~F~~~Da~~~~- 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD-----------LSKRMFFHTADVMDVT- 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC-----------ccCCcEEEECchhhcc-
Confidence 6689999999965 65666653 3 457999999 8899999999865 32 2457899887766532
Q ss_pred cccCCCCccEEEEcccccC-CcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 138 IKAVAPPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~~y~-~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
....+||+|++.-++|. .+....+++.+.+.|+|||.+++-.
T Consensus 191 --~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 191 --ESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred --cccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 12468999999944555 4789999999999999999999885
No 125
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.23 E-value=5.7e-11 Score=96.01 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=78.0
Q ss_pred CCCeEEEeCCCccH----HHHHHHHh-------CCEEEEEcC-cchHHHHHHHHHHh----hhhh-------ccCCC---
Q 028673 64 KGKRVIELGAGCGV----AGFGMALL-------GCNVITTDQ-IEVLPLLKRNVEWN----TSRI-------SQMNP--- 117 (205)
Q Consensus 64 ~~~~VLdlGcGtGl----~sl~~a~~-------g~~v~~~D~-~~~l~~~~~n~~~n----~~~~-------~~~~~--- 117 (205)
++.+|+|+|||||- +++.++.. +.+|+++|+ ++|++.|++.+-.. .... .....
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34689999999995 45555543 247999999 78999998764110 0000 00000
Q ss_pred -CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 118 -GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 118 -~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
+.....++.+...|..+.. ...++||+|++..++.+.. ....+++.+.+.|+|||.+++...-.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~---~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES---PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred EChHHhCcCEEeeccCCCCC---CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 0011235677776555432 2356899999998886653 45689999999999999999976533
No 126
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.22 E-value=1.8e-12 Score=100.09 Aligned_cols=98 Identities=19% Similarity=0.269 Sum_probs=75.1
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEE-eecCCCCCcccCCC
Q 028673 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE-LDWGNEDHIKAVAP 143 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~-~dw~~~~~~~~~~~ 143 (205)
+++||||||||+.|..+-.+..+.+++|+ .+|++.+.+.=- .+...... ..+... ....
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~---------------YD~L~~Aea~~Fl~~----~~~e 187 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGL---------------YDTLYVAEAVLFLED----LTQE 187 (287)
T ss_pred ceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccc---------------hHHHHHHHHHHHhhh----ccCC
Confidence 58999999999999999999999999999 668877654210 00000000 001111 2356
Q ss_pred CccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
+||+|.+.||+-+...++.++..+..+|+|||.+.++.+
T Consensus 188 r~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 188 RFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred cccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEec
Confidence 899999999999999999999999999999999999865
No 127
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.21 E-value=3.5e-10 Score=91.45 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=78.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
+|.+|||+|||+|..++.++.+ ...|+++|. +.+++.+++|++.++. .++.+...|.....
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~~--- 135 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------------LNVAVTNFDGRVFG--- 135 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------------CcEEEecCCHHHhh---
Confidence 6789999999999999988875 247999999 7899999999998864 34666665543321
Q ss_pred cCCCCccEEEEcccccCCc----------------------ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 140 AVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~----------------------~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
....+||.|+...+..... ....+++.+.++++|||.++.+...-..
T Consensus 136 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 136 AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1234699999855433211 1235888888999999998877554433
No 128
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.21 E-value=4.6e-10 Score=88.97 Aligned_cols=112 Identities=16% Similarity=0.180 Sum_probs=83.5
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEe----ecCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL----DWGN 134 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~----dw~~ 134 (205)
.+++..+||+|||+|.+|+.++.. ..+|+++|. +.++..+.+|+..+.. .+.+.++.. +|.+
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-----------~g~i~v~~~~me~d~~~ 214 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-----------SGRIEVIHNIMESDASD 214 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh-----------cCceEEEeccccccccc
Confidence 345568999999999999988754 456999999 6799999999999865 567777743 4444
Q ss_pred CCCcccCCCCccEEEEcccccCCcC--------------------------hHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 135 EDHIKAVAPPFDYIIGTDVVYAEHL--------------------------LEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 135 ~~~~~~~~~~fD~Ii~~d~~y~~~~--------------------------~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
... ...+++|++++|+++-..++ +..++.-+.++|+|||.+++....|..
T Consensus 215 ~~~--l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~ 290 (328)
T KOG2904|consen 215 EHP--LLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKE 290 (328)
T ss_pred ccc--cccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccccc
Confidence 432 34579999999988755332 223455566789999999999985544
No 129
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.21 E-value=1.6e-10 Score=95.18 Aligned_cols=112 Identities=14% Similarity=0.068 Sum_probs=77.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
.+.+|||||||||..+..+++. +.+|+++|+ ++|++.+++++..... ..++.....|..+.....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-----------~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-----------QLEVHGICADFTQPLALP 131 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC-----------CceEEEEEEcccchhhhh
Confidence 4578999999999999988876 467999999 7899999988775421 123555565554432111
Q ss_pred cC--CCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 140 AV--APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 140 ~~--~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
.. .....+++...++++. +....+++.+++.|+|||.+++....+..
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 11 1123344554566654 34567999999999999999988765444
No 130
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.20 E-value=2.9e-10 Score=85.91 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=68.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
++.+|||+|||+|.++..+++++.+|+++|+ +.+++.+++|+... +++++...|..+.. ...
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~--------------~~v~ii~~D~~~~~---~~~ 75 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA--------------DNLTVIHGDALKFD---LPK 75 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC--------------CCEEEEECchhcCC---ccc
Confidence 5679999999999999999999889999999 77999999887532 35777776665443 223
Q ss_pred CCccEEEEcccccCCcChHhHHHHHHHh--hCCCcEEEEEE
Q 028673 143 PPFDYIIGTDVVYAEHLLEPLLQTIFAL--SGPKTTILVMF 181 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~--l~~~g~~~i~~ 181 (205)
.+||.|+++.+++. ..+++..+.+. +.++|.+++-.
T Consensus 76 ~~~d~vi~n~Py~~---~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 76 LQPYKVVGNLPYNI---STPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cCCCEEEECCCccc---HHHHHHHHHhcCCCcceEEEEEEH
Confidence 36999998765442 23444444332 23566665543
No 131
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.19 E-value=1.1e-10 Score=91.01 Aligned_cols=101 Identities=24% Similarity=0.324 Sum_probs=72.5
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 61 SKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl~sl~~a~~-g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
...+|.+|||+|||||..+..++.. |. +|+++|. ++..+.+++|++..+. .++.+...|-...
T Consensus 69 ~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------------~nv~~~~gdg~~g- 135 (209)
T PF01135_consen 69 DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------------DNVEVVVGDGSEG- 135 (209)
T ss_dssp TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------------HSEEEEES-GGGT-
T ss_pred hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------------CceeEEEcchhhc-
Confidence 4557889999999999999999987 43 5999999 8899999999998764 3678877553322
Q ss_pred CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.....+||.|+.+-.+ +.+-..+.+.|++||++++-..
T Consensus 136 --~~~~apfD~I~v~~a~------~~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 136 --WPEEAPFDRIIVTAAV------PEIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp --TGGG-SEEEEEESSBB------SS--HHHHHTEEEEEEEEEEES
T ss_pred --cccCCCcCEEEEeecc------chHHHHHHHhcCCCcEEEEEEc
Confidence 2234689999998443 2344556677899999888665
No 132
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=4.2e-10 Score=96.88 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=80.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
+|.+|||+|||+|..++.++.. +.+|+++|+ +++++.+++|++..+. .++.+...|......
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------------~~v~~~~~Da~~l~~-- 302 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------------SSIEIKIADAERLTE-- 302 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CeEEEEECchhhhhh--
Confidence 6789999999999999988876 457999999 7899999999988754 246777766554321
Q ss_pred cCCCCccEEEEcccccCCc----------------------ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 140 AVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~----------------------~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
...++||.|++..+..... ....++..+.++|+|||.++.+...-..
T Consensus 303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 1245799999854442211 1246688888999999998888764433
No 133
>PTZ00146 fibrillarin; Provisional
Probab=99.19 E-value=3.9e-10 Score=91.45 Aligned_cols=132 Identities=12% Similarity=0.057 Sum_probs=84.5
Q ss_pred ccccccc-HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHHhh
Q 028673 35 GTTVWDA-SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNT 109 (205)
Q Consensus 35 g~~~W~~-~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~n~ 109 (205)
-.++|+- ---||..+...... ....++.+|||||||+|..+..++... ..|+++|+ +.+++.+...++..
T Consensus 106 eyR~w~p~rSKlaa~i~~g~~~----l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r- 180 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGVAN----IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR- 180 (293)
T ss_pred eeeeeCCcccHHHHHHHCCcce----eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-
Confidence 3678854 22455444332111 123467899999999999999999873 36999999 66654444333221
Q ss_pred hhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 110 ~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
.++..+..|...........+.||+|++.- ..++....++..+.++|||+|.++++.+.+..
T Consensus 181 -------------~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv--a~pdq~~il~~na~r~LKpGG~~vI~ika~~i 242 (293)
T PTZ00146 181 -------------PNIVPIIEDARYPQKYRMLVPMVDVIFADV--AQPDQARIVALNAQYFLKNGGHFIISIKANCI 242 (293)
T ss_pred -------------CCCEEEECCccChhhhhcccCCCCEEEEeC--CCcchHHHHHHHHHHhccCCCEEEEEEecccc
Confidence 245666655443322222335799998853 34555556777899999999999997665544
No 134
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=6.1e-10 Score=96.09 Aligned_cols=107 Identities=21% Similarity=0.173 Sum_probs=78.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
+|.+|||+|||+|..++.+++. + .+|+++|. +++++.+++|++.++. .++.+...|..+.....
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------------~~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------------KSIKILAADSRNLLELK 319 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------------CeEEEEeCChhhccccc
Confidence 5789999999999999999876 2 47999999 7899999999998864 34677765554332110
Q ss_pred -cCCCCccEEEEcccc------cCCcC----------------hHhHHHHHHHhhCCCcEEEEEEe
Q 028673 140 -AVAPPFDYIIGTDVV------YAEHL----------------LEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 140 -~~~~~fD~Ii~~d~~------y~~~~----------------~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
....+||.|++..+. ..... ...+++.+.++++|||.++.+..
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 124579999974332 11111 35778888999999999887754
No 135
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.18 E-value=2.7e-10 Score=95.84 Aligned_cols=109 Identities=15% Similarity=0.070 Sum_probs=82.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
.+..+||||||+|...+.+|+.. ..++|+|+ +.++..+.+++..++. .++.+...|...... ..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL------------~NV~~i~~DA~~ll~-~~ 188 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL------------KNLLIINYDARLLLE-LL 188 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHhhh-hC
Confidence 35689999999999999999885 46999999 7899999999888754 468888877654321 12
Q ss_pred CCCCccEEEEcccccCCc------ChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 141 VAPPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~------~~~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
.++++|.|+.+-+.-+.. ..+.+++.+.++|+|||.+.+..-...
T Consensus 189 ~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 189 PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 357899999874433221 126899999999999999998755333
No 136
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.18 E-value=1.6e-10 Score=95.26 Aligned_cols=84 Identities=18% Similarity=0.116 Sum_probs=59.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHh-hhhhccCCCCCCCCCceEEEEe-ecCCCC-C
Q 028673 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVEL-DWGNED-H 137 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~i~~~~~-dw~~~~-~ 137 (205)
.+.+|||||||+|.+...++.+ +.+++++|+ +.+++.+++|++.| +. .+++.+... +-.+.. .
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-----------~~~I~~~~~~~~~~i~~~ 182 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-----------NGAIRLRLQKDSKAIFKG 182 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----------cCcEEEEEccchhhhhhc
Confidence 4578999999999777666654 678999999 88999999999999 44 345665431 111111 1
Q ss_pred cccCCCCccEEEEcccccCCc
Q 028673 138 IKAVAPPFDYIIGTDVVYAEH 158 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~~y~~~ 158 (205)
......+||+|++|+++|...
T Consensus 183 i~~~~~~fDlivcNPPf~~s~ 203 (321)
T PRK11727 183 IIHKNERFDATLCNPPFHASA 203 (321)
T ss_pred ccccCCceEEEEeCCCCcCcc
Confidence 111246899999999988743
No 137
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.17 E-value=4.2e-10 Score=91.35 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=68.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC-----CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g-----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
.+.+|||+|||+|..+..+++.. .+|+++|+ +++++.++++. .++.+...+..+.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------------~~~~~~~~d~~~l-- 145 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------------PQVTFCVASSHRL-- 145 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------------CCCeEEEeecccC--
Confidence 34689999999999998887652 36999999 77888876542 2355666554432
Q ss_pred cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
+..+++||+|++. +. +..++.+.+.|+|||.++++.+..
T Consensus 146 -p~~~~sfD~I~~~---~~----~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 146 -PFADQSLDAIIRI---YA----PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred -CCcCCceeEEEEe---cC----CCCHHHHHhhccCCCEEEEEeCCC
Confidence 2335689999975 32 234578889999999999987643
No 138
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.17 E-value=7.2e-10 Score=93.13 Aligned_cols=107 Identities=12% Similarity=0.044 Sum_probs=80.6
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc-----
Q 028673 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK----- 139 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~----- 139 (205)
.+|||||||+|.+|+.+++...+|+++|. +++++.+++|++.|+. .++.+...|..+.....
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~------------~~v~~~~~d~~~~~~~~~~~~~ 266 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNI------------DNVQIIRMSAEEFTQAMNGVRE 266 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEEcCHHHHHHHHhhccc
Confidence 46999999999999999988878999999 8899999999999964 35777776654321100
Q ss_pred c---C-----CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673 140 A---V-----APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT 189 (205)
Q Consensus 140 ~---~-----~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~ 189 (205)
. . ...||+|+.-++ .....+.+++.+.+ +++.+|++........+
T Consensus 267 ~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~~---~~~ivYvsC~p~tlaRD 319 (353)
T TIGR02143 267 FRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQA---YERILYISCNPETLKAN 319 (353)
T ss_pred cccccccccccCCCCEEEECCC--CCCCcHHHHHHHHc---CCcEEEEEcCHHHHHHH
Confidence 0 0 124899999666 45667777777755 78999999876665554
No 139
>PRK04457 spermidine synthase; Provisional
Probab=99.17 E-value=2.3e-10 Score=92.32 Aligned_cols=108 Identities=10% Similarity=0.082 Sum_probs=78.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
..++|||||||+|.++..+++. +.+|+++|+ +++++.+++++..+. ..+++++...|..+.- ..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~-----------~~~rv~v~~~Da~~~l--~~ 132 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE-----------NGERFEVIEADGAEYI--AV 132 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC-----------CCCceEEEECCHHHHH--Hh
Confidence 4578999999999999988876 457999999 889999999876542 1346777775543321 12
Q ss_pred CCCCccEEEEcccccCCc------ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 141 VAPPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~------~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
...+||+|+.. . |+.. ....+++.+.+.|+|||.+++....+..
T Consensus 133 ~~~~yD~I~~D-~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~ 182 (262)
T PRK04457 133 HRHSTDVILVD-G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK 182 (262)
T ss_pred CCCCCCEEEEe-C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch
Confidence 24589999974 2 3322 2368999999999999999886554443
No 140
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.17 E-value=3.2e-10 Score=88.60 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=71.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC---CEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc-
Q 028673 63 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 138 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~- 138 (205)
.++.+|||||||||..+..+++.. .+|+++|+.++. + ..++.+...|+.+....
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~---------~-------------~~~v~~i~~D~~~~~~~~ 107 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD---------P-------------IVGVDFLQGDFRDELVLK 107 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc---------C-------------CCCcEEEecCCCChHHHH
Confidence 357799999999999999888873 369999994421 0 12467888777664310
Q ss_pred ----ccCCCCccEEEEcccccCCcC-----------hHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 139 ----KAVAPPFDYIIGTDVVYAEHL-----------LEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 139 ----~~~~~~fD~Ii~~d~~y~~~~-----------~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
.....+||+|+++.+.+.... .+.+++.+.++|+|||.+++.....
T Consensus 108 ~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 108 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred HHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 122568999999765544322 2468899999999999999975443
No 141
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.14 E-value=1e-09 Score=92.48 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=78.1
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-ccc---
Q 028673 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA--- 140 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~-~~~--- 140 (205)
.+||||+||+|.+|+.+++...+|+++|. +++++.+++|++.|+. +++++...|..+.-. ...
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~------------~~v~~~~~d~~~~l~~~~~~~~ 275 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI------------DNVQIIRMSAEEFTQAMNGVRE 275 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC------------CcEEEEECCHHHHHHHHhhccc
Confidence 57999999999999999988778999999 8899999999999964 367777766543211 000
Q ss_pred ---------CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 141 ---------VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 141 ---------~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
...+||+|+.-++ + ....+.+++.+.+ +++.+|++......
T Consensus 276 ~~~~~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~~---~~~ivyvSC~p~tl 325 (362)
T PRK05031 276 FNRLKGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQA---YERILYISCNPETL 325 (362)
T ss_pred ccccccccccCCCCCEEEECCC-C-CCCcHHHHHHHHc---cCCEEEEEeCHHHH
Confidence 0225899999655 5 4666777777765 68889998776443
No 142
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.14 E-value=1.2e-09 Score=94.04 Aligned_cols=120 Identities=14% Similarity=0.078 Sum_probs=81.3
Q ss_pred ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C-CEEEEEcC-cchHHHHHHHHHHhhhhhccCC
Q 028673 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (205)
Q Consensus 40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (205)
.++..++.++.. .+|.+|||+|||+|..++.++.. + .+|+++|. +++++.+++|++.++.
T Consensus 225 ~~s~~~~~~L~~-----------~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~------ 287 (426)
T TIGR00563 225 ASAQWVATWLAP-----------QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL------ 287 (426)
T ss_pred HHHHHHHHHhCC-----------CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC------
Confidence 456666666632 25789999999999999999876 3 57999999 7899999999998864
Q ss_pred CCCCCCCceEEEEeecCCCCCcccCCCCccEEEEccc------ccCCcC----------------hHhHHHHHHHhhCCC
Q 028673 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV------VYAEHL----------------LEPLLQTIFALSGPK 174 (205)
Q Consensus 117 ~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~------~y~~~~----------------~~~ll~~~~~~l~~~ 174 (205)
...+.....|...... .....+||.|++..+ +..... ...+++.+.++|+||
T Consensus 288 -----~~~v~~~~~d~~~~~~-~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 288 -----TIKAETKDGDGRGPSQ-WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred -----CeEEEEeccccccccc-cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1122223333221111 012457999986322 222111 257888999999999
Q ss_pred cEEEEEEe
Q 028673 175 TTILVMFS 182 (205)
Q Consensus 175 g~~~i~~~ 182 (205)
|.++++..
T Consensus 362 G~lvystc 369 (426)
T TIGR00563 362 GTLVYATC 369 (426)
T ss_pred cEEEEEeC
Confidence 99988754
No 143
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.14 E-value=2.1e-09 Score=93.11 Aligned_cols=122 Identities=18% Similarity=0.096 Sum_probs=85.0
Q ss_pred cccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhh
Q 028673 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRI 112 (205)
Q Consensus 37 ~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (205)
.+++.+..++..+.. ..+|.+|||+|||+|..++.++.. +.+|+++|. +++++.+++|++.++.
T Consensus 233 ~vqd~~s~l~~~~l~----------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-- 300 (445)
T PRK14904 233 SVQNPTQALACLLLN----------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-- 300 (445)
T ss_pred EEeCHHHHHHHHhcC----------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC--
Confidence 456544445444432 236789999999999999888864 357999999 7899999999988764
Q ss_pred ccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccc------cC-C--------c-------ChHhHHHHHHHh
Q 028673 113 SQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV------YA-E--------H-------LLEPLLQTIFAL 170 (205)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~------y~-~--------~-------~~~~ll~~~~~~ 170 (205)
.++++...|..... ...+||.|+.-.+. .. + . ....++..+.++
T Consensus 301 ----------~~v~~~~~Da~~~~----~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 366 (445)
T PRK14904 301 ----------TIIETIEGDARSFS----PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASL 366 (445)
T ss_pred ----------CeEEEEeCcccccc----cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 35677775554432 24579999863221 10 0 0 123588889999
Q ss_pred hCCCcEEEEEEeec
Q 028673 171 SGPKTTILVMFSLS 184 (205)
Q Consensus 171 l~~~g~~~i~~~~r 184 (205)
++|||+++++...-
T Consensus 367 lkpgG~lvystcs~ 380 (445)
T PRK14904 367 LKPGGVLVYATCSI 380 (445)
T ss_pred cCCCcEEEEEeCCC
Confidence 99999999887543
No 144
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.11 E-value=2.5e-10 Score=87.64 Aligned_cols=99 Identities=19% Similarity=0.178 Sum_probs=80.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
.-.+|.|||||+|...-.++++ ++.++++|- ++|++.++.. ..++++...|..+..
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----------------lp~~~f~~aDl~~w~---- 88 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----------------LPDATFEEADLRTWK---- 88 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----------------CCCCceecccHhhcC----
Confidence 3468999999999999999987 678999999 8899887643 234566665544443
Q ss_pred CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL 183 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~ 183 (205)
...+.|++++|-++.+-.++..++..+...|.|||.+-+-.+.
T Consensus 89 p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 89 PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCC
Confidence 3458999999999999999999999999999999998777653
No 145
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.10 E-value=4.4e-10 Score=85.37 Aligned_cols=96 Identities=17% Similarity=0.199 Sum_probs=70.3
Q ss_pred CCCeEEEeCCCccHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 64 KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
+|.+|||||||.|.+-..+.. ++.+.+++|+ ++.+..+.+ ++ +.+.+.|..+.-. ...
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG---------------v~Viq~Dld~gL~-~f~ 72 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG---------------VSVIQGDLDEGLA-DFP 72 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC---------------CCEEECCHHHhHh-hCC
Confidence 478999999999977666664 6788999999 554433332 22 5677877665421 234
Q ss_pred CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
+++||+||.+.++-....++.+++.+.+ -|...+++++
T Consensus 73 d~sFD~VIlsqtLQ~~~~P~~vL~EmlR---Vgr~~IVsFP 110 (193)
T PF07021_consen 73 DQSFDYVILSQTLQAVRRPDEVLEEMLR---VGRRAIVSFP 110 (193)
T ss_pred CCCccEEehHhHHHhHhHHHHHHHHHHH---hcCeEEEEec
Confidence 7899999999999988888888776644 4667888876
No 146
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.08 E-value=4.6e-10 Score=87.22 Aligned_cols=105 Identities=17% Similarity=0.150 Sum_probs=81.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-c
Q 028673 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~-~ 138 (205)
+.++|||+||++|..++.+|+. +++|+.+|. ++..+.+++|++..+. .+++++...+..+.-. +
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----------~~~I~~~~gda~~~l~~l 113 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----------DDRIEVIEGDALEVLPEL 113 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----------GGGEEEEES-HHHHHHHH
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----------CCcEEEEEeccHhhHHHH
Confidence 5679999999999999999975 578999999 8899999999998865 4578998866544211 1
Q ss_pred cc--CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 139 KA--VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 139 ~~--~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.. ..++||+|+.- .....+...++.+.+++++||.+++-.-
T Consensus 114 ~~~~~~~~fD~VFiD---a~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 114 ANDGEEGQFDFVFID---ADKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp HHTTTTTSEEEEEEE---STGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred HhccCCCceeEEEEc---ccccchhhHHHHHhhhccCCeEEEEccc
Confidence 11 13589999985 3567788889999999999998777644
No 147
>PLN02476 O-methyltransferase
Probab=99.07 E-value=1.5e-09 Score=87.77 Aligned_cols=104 Identities=13% Similarity=0.191 Sum_probs=80.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~ 138 (205)
+.++|||+|+|+|..++.+|+. +.+|+.+|. ++.++.+++|++.++. .+++++...+..+.- .+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----------~~~I~li~GdA~e~L~~l 186 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----------SHKVNVKHGLAAESLKSM 186 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence 5689999999999999999974 446999999 8899999999999865 457888875543321 11
Q ss_pred --ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 139 --KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 139 --~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
....++||+|+.- -....+...++.+.++++|||.+++-.
T Consensus 187 ~~~~~~~~FD~VFID---a~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 187 IQNGEGSSYDFAFVD---ADKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred HhcccCCCCCEEEEC---CCHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 0113589999885 345678899999999999999977653
No 148
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.07 E-value=7.1e-09 Score=79.60 Aligned_cols=101 Identities=18% Similarity=0.145 Sum_probs=67.6
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
...++.+|||+|||+|.++..+++.. .+|+++|++++. .. .++.+...|..+...
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-------~~---------------~~i~~~~~d~~~~~~ 86 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-------PI---------------ENVDFIRGDFTDEEV 86 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-------cC---------------CCceEEEeeCCChhH
Confidence 34578899999999999999888763 369999994321 01 235666666654321
Q ss_pred c-----ccCCCCccEEEEcccccC-----Cc------ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673 138 I-----KAVAPPFDYIIGTDVVYA-----EH------LLEPLLQTIFALSGPKTTILVMFSL 183 (205)
Q Consensus 138 ~-----~~~~~~fD~Ii~~d~~y~-----~~------~~~~ll~~~~~~l~~~g~~~i~~~~ 183 (205)
. ....++||+|++..+.+. .. ..+.+++.+.++|+|||.+++....
T Consensus 87 ~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 87 LNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred HHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 0 012457999998643211 11 1367889999999999999996543
No 149
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.05 E-value=2.2e-09 Score=83.78 Aligned_cols=106 Identities=19% Similarity=0.146 Sum_probs=83.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEE-eecCCCCCc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE-LDWGNEDHI 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~-~dw~~~~~~ 138 (205)
..++|||+|+++|+.++.+|.. ..++|.+|. ++..+.|++|++.-+. .+++.... +|+.+.-..
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----------~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----------DDRIELLLGGDALDVLSR 127 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----------cceEEEEecCcHHHHHHh
Confidence 5689999999999999999975 347999999 8899999999999865 34566666 355443211
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
...++||+|+.- ......+..++.+.++|+|||.+++-.-..
T Consensus 128 -~~~~~fDliFID---adK~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 128 -LLDGSFDLVFID---ADKADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred -ccCCCccEEEEe---CChhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 246799999985 667888999999999999999887764433
No 150
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.04 E-value=1.4e-09 Score=92.15 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=74.4
Q ss_pred CCeEEEeCCCccHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 65 GKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
+.+|||++||+|..|+.+++. ++ +|+++|+ +++++.+++|++.|+. .++.+...|..... ..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~------------~~~~v~~~Da~~~l--~~- 122 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL------------ENEKVFNKDANALL--HE- 122 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CceEEEhhhHHHHH--hh-
Confidence 468999999999999999875 43 6999999 8899999999999964 23455554443221 11
Q ss_pred CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
..+||+|+.. + | .....++....+.++++|.++++
T Consensus 123 ~~~fD~V~lD-P-~--Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 123 ERKFDVVDID-P-F--GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred cCCCCEEEEC-C-C--CCcHHHHHHHHHHhcCCCEEEEE
Confidence 3579999994 4 3 55578888877778999999999
No 151
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.03 E-value=5.2e-09 Score=82.32 Aligned_cols=131 Identities=17% Similarity=0.108 Sum_probs=87.3
Q ss_pred ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhh--cc-C
Q 028673 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRI--SQ-M 115 (205)
Q Consensus 40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~--~~-~ 115 (205)
.....|.+|+... ...++.+||..|||.|.-.+.+|..|.+|+++|+ +.+++.+.+ .|+... .+ .
T Consensus 27 ~pnp~L~~~~~~l--------~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~ 95 (226)
T PRK13256 27 SPNEFLVKHFSKL--------NINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFS---QNTINYEVIHGN 95 (226)
T ss_pred CCCHHHHHHHHhc--------CCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHH---HcCCCcceeccc
Confidence 3466777777553 1225679999999999999999999999999999 668777644 221110 00 0
Q ss_pred CCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 116 ~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
.........+++...|+-+........++||+|+-.-++.. ++....-.+.+.++|+|||.+++..
T Consensus 96 ~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 96 DYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred ccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 00011234678888666654321122358999876655543 5667788999999999999866654
No 152
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=3.7e-09 Score=79.13 Aligned_cols=128 Identities=17% Similarity=0.179 Sum_probs=90.2
Q ss_pred cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCC
Q 028673 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (205)
Q Consensus 41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (205)
.+..|.+.|+.....- .....+-++|||||+|.++-.+++. + +-+.+||+ |++++...+.++.|+.
T Consensus 24 DTFlLlDaLekd~~eL----~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~------ 93 (209)
T KOG3191|consen 24 DTFLLLDALEKDAAEL----KGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV------ 93 (209)
T ss_pred hhhHHHHHHHHHHHHH----hhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC------
Confidence 3666777776542100 0001457999999999999999876 3 34899999 8999999999999964
Q ss_pred CCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC---------------------cChHhHHHHHHHhhCCCc
Q 028673 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---------------------HLLEPLLQTIFALSGPKT 175 (205)
Q Consensus 117 ~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~---------------------~~~~~ll~~~~~~l~~~g 175 (205)
.+++...|....- .+++.|+++.++++--. +..+.++..+..+|+|.|
T Consensus 94 -------~~~~V~tdl~~~l----~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~G 162 (209)
T KOG3191|consen 94 -------HIDVVRTDLLSGL----RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRG 162 (209)
T ss_pred -------ccceeehhHHhhh----ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCc
Confidence 3555554443321 23688988888765331 125578888888999999
Q ss_pred EEEEEEeeccchhH
Q 028673 176 TILVMFSLSMFSLT 189 (205)
Q Consensus 176 ~~~i~~~~r~~~~~ 189 (205)
.+|+..-.++...+
T Consensus 163 v~Ylv~~~~N~p~e 176 (209)
T KOG3191|consen 163 VFYLVALRANKPKE 176 (209)
T ss_pred eEEeeehhhcCHHH
Confidence 99999988777554
No 153
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=5.5e-09 Score=82.39 Aligned_cols=103 Identities=17% Similarity=0.054 Sum_probs=81.1
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 61 SKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl~sl~~a~~-g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
...+|.+|||.|.|+|.++.++|.. |. +|+..|+ ++.++.|++|++..+. .+++.....|..+..
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----------~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----------GDRVTLKLGDVREGI 159 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----------ccceEEEeccccccc
Confidence 4557899999999999999999974 44 6999999 8899999999998754 344666665544433
Q ss_pred CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL 183 (205)
Q Consensus 137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~ 183 (205)
. ...||.|+. +...+...++.+...|+|||.+.+-.+.
T Consensus 160 ---~-~~~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 160 ---D-EEDVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred ---c-ccccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 1 238998887 3456778999999999999998777663
No 154
>PRK00811 spermidine synthase; Provisional
Probab=99.01 E-value=2.8e-09 Score=87.00 Aligned_cols=110 Identities=14% Similarity=0.018 Sum_probs=75.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
..++||+||||+|..+..+.+. + .+|+++|+ +++++.+++++....... ...+++++...|....- ..
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-------~~d~rv~v~~~Da~~~l--~~ 146 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA-------YDDPRVELVIGDGIKFV--AE 146 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc-------ccCCceEEEECchHHHH--hh
Confidence 4579999999999999988876 4 46999999 889999999876432100 01346777775543321 11
Q ss_pred CCCCccEEEEc--ccccCCc--ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 141 VAPPFDYIIGT--DVVYAEH--LLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 141 ~~~~fD~Ii~~--d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
..++||+|++. ++..... ....+++.+++.|+|||.+++-..
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 35689999984 2211111 125788999999999999887543
No 155
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=99.00 E-value=7.3e-09 Score=81.71 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=74.0
Q ss_pred cccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHH-HHHHHHHhhhhhc
Q 028673 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL-LKRNVEWNTSRIS 113 (205)
Q Consensus 37 ~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~-~~~n~~~n~~~~~ 113 (205)
.+..++.-|.+.+... ...+++++|||+|||||.++..+++.|+ +|+++|. ++++.. ++.+.+-..
T Consensus 55 ~vsr~~~kL~~~l~~~-------~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~---- 123 (228)
T TIGR00478 55 FVSRGGEKLKEALEEF-------NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKV---- 123 (228)
T ss_pred hhhhhHHHHHHHHHhc-------CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeE----
Confidence 5677888899888775 3456889999999999999999999987 5999999 655543 333211000
Q ss_pred cCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 114 ~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
.....+...+|.+.. ..-..+|++++| +..++..+.+++++ |.+++-.
T Consensus 124 --------~~~~ni~~~~~~~~~---~d~~~~DvsfiS--------~~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 124 --------LERTNIRYVTPADIF---PDFATFDVSFIS--------LISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred --------eecCCcccCCHhHcC---CCceeeeEEEee--------hHhHHHHHHHHhCc-CeEEEEc
Confidence 011122244455442 112367777665 22368888889988 6655444
No 156
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.99 E-value=3.6e-09 Score=81.67 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=67.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
.+.+|||+|||+|..+..+++. +.+++++|. +++++.++. + ++.+...+..+... ...
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~---------------~~~~~~~d~~~~l~-~~~ 72 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R---------------GVNVIQGDLDEGLE-AFP 72 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c---------------CCeEEEEEhhhccc-ccC
Confidence 4679999999999998888754 557999999 777776643 1 13455555443110 123
Q ss_pred CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
+++||+|+++.++++..+...+++.+.+.++ .++++.+
T Consensus 73 ~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p 110 (194)
T TIGR02081 73 DKSFDYVILSQTLQATRNPEEILDEMLRVGR---HAIVSFP 110 (194)
T ss_pred CCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcC
Confidence 4689999999999998888888887776654 4555544
No 157
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.98 E-value=3.8e-09 Score=85.14 Aligned_cols=76 Identities=20% Similarity=0.249 Sum_probs=60.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
..++.+|||+|||+|.++..+++.+.+|+++|+ +.+++.+++++... +++++...|..+..
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~--------------~~v~ii~~D~~~~~---- 88 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA--------------GNVEIIEGDALKVD---- 88 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC--------------CCEEEEEeccccCC----
Confidence 346789999999999999999999889999999 77999988876532 35788887665542
Q ss_pred CCCCccEEEEcccccC
Q 028673 141 VAPPFDYIIGTDVVYA 156 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~ 156 (205)
.+.||.|++|.+++.
T Consensus 89 -~~~~d~Vv~NlPy~i 103 (258)
T PRK14896 89 -LPEFNKVVSNLPYQI 103 (258)
T ss_pred -chhceEEEEcCCccc
Confidence 235899999888654
No 158
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.98 E-value=2.2e-09 Score=83.02 Aligned_cols=97 Identities=21% Similarity=0.166 Sum_probs=70.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHH--hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 63 LKGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
.+|.+|+|+.||.|..++.+|+ .++.|+++|+ |.+++.+++|++.|+. .+++.+...|..+...
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----------~~~i~~~~~D~~~~~~-- 166 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-----------ENRIEVINGDAREFLP-- 166 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT------------TTTEEEEES-GGG-----
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-----------CCeEEEEcCCHHHhcC--
Confidence 3578999999999999999999 5667999999 8999999999999965 4678888877665532
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEE
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 178 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~ 178 (205)
...||.|+++-+ .....++..+..+++++|.+-
T Consensus 167 --~~~~drvim~lp----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 167 --EGKFDRVIMNLP----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp --TT-EEEEEE--T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred --ccccCEEEECCh----HHHHHHHHHHHHHhcCCcEEE
Confidence 568999999732 333467777888888888653
No 159
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.96 E-value=8.8e-09 Score=82.08 Aligned_cols=99 Identities=18% Similarity=0.121 Sum_probs=76.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
..++|+|+|+|+|..++.+++. +.+++..|.|++++.+++ . +++++...|+-+. .
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~---~---------------~rv~~~~gd~f~~-----~ 156 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE---A---------------DRVEFVPGDFFDP-----L 156 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH---T---------------TTEEEEES-TTTC-----C
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc---c---------------cccccccccHHhh-----h
Confidence 3468999999999999999987 457999999998888877 1 4789999776622 2
Q ss_pred CCCccEEEEcccccCCc--ChHhHHHHHHHhhCCC--cEEEEEEeeccc
Q 028673 142 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPK--TTILVMFSLSMF 186 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~--g~~~i~~~~r~~ 186 (205)
+. +|+++.+.++++.. ....+++.+++.++|| |+++|.......
T Consensus 157 P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 157 PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 33 99999999998754 4558999999999988 999999876433
No 160
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.96 E-value=5.7e-09 Score=90.01 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=71.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC------CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
+++.|+|+|||+|.++..+++.+ .+|++++. +.++..++..++.|+. .++|+++..|..+.+
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----------~~~V~vi~~d~r~v~ 254 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----------GDKVTVIHGDMREVE 254 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----------TTTEEEEES-TTTSC
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----------CCeEEEEeCcccCCC
Confidence 46899999999999999888775 26999999 6677777776677753 578999997766654
Q ss_pred CcccCCCCccEEEEccccc--CCcChHhHHHHHHHhhCCCcEEE
Q 028673 137 HIKAVAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTIL 178 (205)
Q Consensus 137 ~~~~~~~~fD~Ii~~d~~y--~~~~~~~ll~~~~~~l~~~g~~~ 178 (205)
.+.+.|+||+--.-+ ..+..+..+....+.|+|+|.++
T Consensus 255 ----lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 255 ----LPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ----HSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ----CCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 245999998743222 23466777888889999998754
No 161
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.94 E-value=7.8e-09 Score=87.22 Aligned_cols=99 Identities=20% Similarity=0.229 Sum_probs=77.3
Q ss_pred CCeEEEeCCCccHHHHHHHHh--CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 65 GKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
+.+|||+.||+|..|+.+++. |+ +|+++|+ +++++.+++|++.|+. .++.+...|..... ..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------------~~~~v~~~Da~~~l--~~ 110 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------------ENIEVPNEDAANVL--RY 110 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CcEEEEchhHHHHH--HH
Confidence 358999999999999999987 55 5999999 8899999999999964 24566665444331 11
Q ss_pred CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
...+||+|.. |+ | ....+++..+.+.++++|.++++.
T Consensus 111 ~~~~fDvIdl-DP-f--Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 111 RNRKFHVIDI-DP-F--GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred hCCCCCEEEe-CC-C--CCcHHHHHHHHHhcccCCEEEEEe
Confidence 1357999988 66 5 344688999999999999999984
No 162
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.94 E-value=1.3e-08 Score=83.49 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=63.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
..++.+|||+|||+|.++..++..+.+|+++|+ +.+++.+++++..++. .+++++...|..+.+
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~-----------~~~v~ii~~Dal~~~---- 98 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL-----------ASKLEVIEGDALKTE---- 98 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC-----------CCcEEEEECCHhhhc----
Confidence 346789999999999999999999889999999 7899999999876532 246888887665433
Q ss_pred CCCCccEEEEcccccCC
Q 028673 141 VAPPFDYIIGTDVVYAE 157 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~ 157 (205)
..+||.|++|-+++-.
T Consensus 99 -~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 99 -FPYFDVCVANVPYQIS 114 (294)
T ss_pred -ccccCEEEecCCcccC
Confidence 2468999987666643
No 163
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.92 E-value=1.4e-08 Score=82.51 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=58.2
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
.++.+|||+|||+|.++..+++.+.+|+++|. +++++.+++++.. +++.+...|+.+... .
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~---------------~~v~~i~~D~~~~~~-~-- 102 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE---------------DNLTIIEGDALKVDL-S-- 102 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc---------------CceEEEEChhhcCCH-H--
Confidence 46789999999999999999999889999999 7899998876532 257888877665431 1
Q ss_pred CCCccEEEEcccccC
Q 028673 142 APPFDYIIGTDVVYA 156 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~ 156 (205)
...+|.|++|.+++.
T Consensus 103 ~~~~~~vv~NlPY~i 117 (272)
T PRK00274 103 ELQPLKVVANLPYNI 117 (272)
T ss_pred HcCcceEEEeCCccc
Confidence 111589999877543
No 164
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=9.8e-09 Score=88.08 Aligned_cols=126 Identities=15% Similarity=0.070 Sum_probs=90.8
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCC
Q 028673 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (205)
Q Consensus 42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (205)
+..|.++.... .....+.+|||+-||.|.+|+.+|+...+|+++|+ +++++.|++|++.|+.
T Consensus 278 ~ekl~~~a~~~-------~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i---------- 340 (432)
T COG2265 278 AEKLYETALEW-------LELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGI---------- 340 (432)
T ss_pred HHHHHHHHHHH-------HhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCC----------
Confidence 44555555554 23335679999999999999999999999999999 8999999999999975
Q ss_pred CCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT 189 (205)
Q Consensus 121 ~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~ 189 (205)
.|+++...+-.+..........||.|+..++= ...-+.+++.+.++ +|..++|++...-....+
T Consensus 341 --~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR--~G~~~~~lk~l~~~-~p~~IvYVSCNP~TlaRD 404 (432)
T COG2265 341 --DNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPR--AGADREVLKQLAKL-KPKRIVYVSCNPATLARD 404 (432)
T ss_pred --CcEEEEeCCHHHHhhhccccCCCCEEEECCCC--CCCCHHHHHHHHhc-CCCcEEEEeCCHHHHHHH
Confidence 45788775554443222224578999986432 24445777777665 477788988765444433
No 165
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.91 E-value=1.1e-08 Score=81.60 Aligned_cols=103 Identities=16% Similarity=0.041 Sum_probs=79.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~ 138 (205)
.-++|||+|+++|+.++.+|+. +.+|+.+|. ++..+.|++|++..+. .++|++...+..+.- .+
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----------~~~I~~~~G~a~e~L~~l 147 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----------AHKIDFREGPALPVLDQM 147 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----------CCceEEEeccHHHHHHHH
Confidence 4579999999999999999865 458999999 7889999999998864 467888886554321 11
Q ss_pred cc---CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 139 KA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 139 ~~---~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
.. ..++||+|+.- .....+...++.+.+++++||.+++-
T Consensus 148 ~~~~~~~~~fD~iFiD---adK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 148 IEDGKYHGTFDFIFVD---ADKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HhccccCCcccEEEec---CCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 11 13589999985 44677788888889999999987654
No 166
>PRK04148 hypothetical protein; Provisional
Probab=98.90 E-value=8.1e-09 Score=74.46 Aligned_cols=80 Identities=21% Similarity=0.230 Sum_probs=55.0
Q ss_pred HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccH-HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCC
Q 028673 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDL 121 (205)
Q Consensus 44 ~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl-~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~ 121 (205)
.+++|+..+. ...++++|||+|||+|. ++..+++.|.+|+++|+ +++++.++.+ +
T Consensus 3 ~i~~~l~~~~-------~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~------------ 59 (134)
T PRK04148 3 TIAEFIAENY-------EKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G------------ 59 (134)
T ss_pred HHHHHHHHhc-------ccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C------------
Confidence 3677776652 23356899999999996 99999999999999999 7776666543 2
Q ss_pred CCceEEEEeecCCCCCcccCCCCccEEEEc
Q 028673 122 LGSIQAVELDWGNEDHIKAVAPPFDYIIGT 151 (205)
Q Consensus 122 ~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~ 151 (205)
+++...|+.+.... .-..+|+|.+.
T Consensus 60 ---~~~v~dDlf~p~~~--~y~~a~liysi 84 (134)
T PRK04148 60 ---LNAFVDDLFNPNLE--IYKNAKLIYSI 84 (134)
T ss_pred ---CeEEECcCCCCCHH--HHhcCCEEEEe
Confidence 36666565544311 12356666664
No 167
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.89 E-value=8.4e-09 Score=79.53 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=79.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
+..-|||+|||||+.|-.+...|...+++|+ +.|++.+.+. .- .-++...|.++. ++..+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~--e~---------------egdlil~DMG~G--lpfrp 110 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER--EL---------------EGDLILCDMGEG--LPFRP 110 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh--hh---------------hcCeeeeecCCC--CCCCC
Confidence 4567999999999999999999988999999 8899988861 11 124566666744 44557
Q ss_pred CCccEEEEcccccCC-------cC----hHhHHHHHHHhhCCCcEEEEEEeeccchh
Q 028673 143 PPFDYIIGTDVVYAE-------HL----LEPLLQTIFALSGPKTTILVMFSLSMFSL 188 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~-------~~----~~~ll~~~~~~l~~~g~~~i~~~~r~~~~ 188 (205)
+.||-+|+-..+.+. +. +..++.++..+++++++.++-+...+...
T Consensus 111 GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q 167 (270)
T KOG1541|consen 111 GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQ 167 (270)
T ss_pred CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHH
Confidence 899998877666431 11 33578889999999999998876555543
No 168
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.87 E-value=2.3e-08 Score=81.10 Aligned_cols=112 Identities=13% Similarity=-0.021 Sum_probs=74.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
..++||+||||+|..+..+++.. .+|+++|+ +++++.+++++...... ....++++...|..+. ...
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~--------~~~~~v~i~~~D~~~~--l~~ 141 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGS--------YDDPRVDLQIDDGFKF--LAD 141 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccc--------ccCCceEEEECchHHH--HHh
Confidence 34699999999999888887764 46999999 78999999887543210 0123556655332211 111
Q ss_pred CCCCccEEEEcccccC--CcC--hHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 141 VAPPFDYIIGTDVVYA--EHL--LEPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~--~~~--~~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
...+||+|++...-.. ... ...+++.++++|+|||.+++......
T Consensus 142 ~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~ 190 (270)
T TIGR00417 142 TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPW 190 (270)
T ss_pred CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcc
Confidence 2468999998533111 111 35788999999999999988754333
No 169
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.86 E-value=3.4e-09 Score=82.73 Aligned_cols=104 Identities=16% Similarity=0.183 Sum_probs=71.1
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~ 144 (205)
+.++|+|||+|..++.+|..-.+|++||. ++|++.+++.-...-. .. ...... .+...+...+++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~----~t-------~~~ms~---~~~v~L~g~e~S 100 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYC----HT-------PSTMSS---DEMVDLLGGEES 100 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccc----cC-------Cccccc---cccccccCCCcc
Confidence 37999999999989999988778999999 7799977764222110 00 011111 111122223679
Q ss_pred ccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 145 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 145 fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
.|+|+++-++|+.+. +.+.+.+.+.|++.|.++.+-..+
T Consensus 101 VDlI~~Aqa~HWFdl-e~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 101 VDLITAAQAVHWFDL-ERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred eeeehhhhhHHhhch-HHHHHHHHHHcCCCCCEEEEEEcc
Confidence 999999999987654 899999999998777554444444
No 170
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=2.2e-08 Score=78.29 Aligned_cols=121 Identities=17% Similarity=0.327 Sum_probs=77.8
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhh------------------hccCCCC
Q 028673 60 PSKLKGKRVIELGAGCGVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSR------------------ISQMNPG 118 (205)
Q Consensus 60 ~~~~~~~~VLdlGcGtGl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~------------------~~~~~~~ 118 (205)
.+.++++.+||+||-+|.+++.+|+. |++ |+++|+ +..++.|++|++.-... +++.+..
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 35667889999999999999999976 776 999999 66889999988642110 0000000
Q ss_pred -----CCCCCceEEEEeec--CCCCCcccCCCCccEEEEcccccC------CcChHhHHHHHHHhhCCCcEEEEE
Q 028673 119 -----SDLLGSIQAVELDW--GNEDHIKAVAPPFDYIIGTDVVYA------EHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 119 -----~~~~~~i~~~~~dw--~~~~~~~~~~~~fD~Ii~~d~~y~------~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
.+...++.+..... ...+-+....+.||+|+|-.+--+ .+-+..+++.+.++|.|||.+++.
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 01111121111000 001111234578999998776533 445778999999999999988775
No 171
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.84 E-value=5.1e-08 Score=82.00 Aligned_cols=146 Identities=18% Similarity=0.143 Sum_probs=87.3
Q ss_pred EEcCeEEEEEeCCCCccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-c
Q 028673 17 EVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-I 95 (205)
Q Consensus 17 ~~~~~~~~i~q~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~ 95 (205)
.+.+..+++...++++. ..-+.....|.+++.... ...++ +||||-||+|.+|+.+|+.+.+|+++|. +
T Consensus 159 ~~~~~~~~~~~~~~sFf--QvN~~~~~~l~~~~~~~l-------~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~ 228 (352)
T PF05958_consen 159 EIQDKGLSFRISPGSFF--QVNPEQNEKLYEQALEWL-------DLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVE 228 (352)
T ss_dssp -ECCCTEEEEEETTS-----SBHHHHHHHHHHHHHHC-------TT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-H
T ss_pred eeeccceEEEECCCcCc--cCcHHHHHHHHHHHHHHh-------hcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCH
Confidence 34455566666665433 223334556666665542 22233 7999999999999999999999999999 8
Q ss_pred chHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-------------cccCCCCccEEEEcccccCCcChHh
Q 028673 96 EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-------------IKAVAPPFDYIIGTDVVYAEHLLEP 162 (205)
Q Consensus 96 ~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~-------------~~~~~~~fD~Ii~~d~~y~~~~~~~ 162 (205)
++++.|++|++.|+. .++++...+-.+... .......+|+|+.-++=- ...+.
T Consensus 229 ~av~~A~~Na~~N~i------------~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~--G~~~~ 294 (352)
T PF05958_consen 229 EAVEDARENAKLNGI------------DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRA--GLDEK 294 (352)
T ss_dssp HHHHHHHHHHHHTT--------------SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT---SCHH
T ss_pred HHHHHHHHHHHHcCC------------CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCC--CchHH
Confidence 899999999999976 467777654332211 011123689888854322 34456
Q ss_pred HHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673 163 LLQTIFALSGPKTTILVMFSLSMFSLT 189 (205)
Q Consensus 163 ll~~~~~~l~~~g~~~i~~~~r~~~~~ 189 (205)
+++.+.+ +.-.+|++-.......+
T Consensus 295 ~~~~~~~---~~~ivYvSCnP~tlaRD 318 (352)
T PF05958_consen 295 VIELIKK---LKRIVYVSCNPATLARD 318 (352)
T ss_dssp HHHHHHH---SSEEEEEES-HHHHHHH
T ss_pred HHHHHhc---CCeEEEEECCHHHHHHH
Confidence 6666654 35677887665554443
No 172
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.83 E-value=1.1e-08 Score=79.96 Aligned_cols=108 Identities=16% Similarity=0.188 Sum_probs=79.5
Q ss_pred eEEEeCCCccHHHHHHHHhC----CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cccc
Q 028673 67 RVIELGAGCGVAGFGMALLG----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA 140 (205)
Q Consensus 67 ~VLdlGcGtGl~sl~~a~~g----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~~~ 140 (205)
+|||+|||.|-...-+.+-. -.|.+.|. |.+++..++|...+. .++.....|...+. ..+.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-------------~~~~afv~Dlt~~~~~~~~ 140 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-------------SRVEAFVWDLTSPSLKEPP 140 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-------------hhhcccceeccchhccCCC
Confidence 79999999998777776653 35999999 889999998876552 23444444444443 2233
Q ss_pred CCCCccEEEEccccc--CCcChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673 141 VAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILVMFSLSMFS 187 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y--~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~ 187 (205)
..+++|+|.+--++- +++.....++.+.+++||||.+++.+..|+-.
T Consensus 141 ~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dl 189 (264)
T KOG2361|consen 141 EEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDL 189 (264)
T ss_pred CcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchH
Confidence 467899997765553 36678899999999999999999987766553
No 173
>PRK03612 spermidine synthase; Provisional
Probab=98.83 E-value=1.8e-08 Score=88.88 Aligned_cols=116 Identities=18% Similarity=0.096 Sum_probs=76.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
+.++|||+|||+|..+..+++.. .+|+++|+ +++++.+++|...+..... .-..+++++...|-.+. ...
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~-----~~~dprv~vi~~Da~~~--l~~ 369 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGG-----ALDDPRVTVVNDDAFNW--LRK 369 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcc-----ccCCCceEEEEChHHHH--HHh
Confidence 46799999999999998888875 47999999 8899999986432211000 01124677777554322 112
Q ss_pred CCCCccEEEEcccccCCc-----ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 141 VAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
..++||+|++...-.... .-+++++.++++|+|||.+++.......
T Consensus 370 ~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~ 420 (521)
T PRK03612 370 LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYF 420 (521)
T ss_pred CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCccc
Confidence 246899999963221111 1236889999999999999886544433
No 174
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.82 E-value=5.5e-08 Score=77.14 Aligned_cols=96 Identities=23% Similarity=0.182 Sum_probs=75.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
.+..++||||+|.|-++..++..-.+|++||. +.|...+++ .+. -.+...+|.+.
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg~--------------~vl~~~~w~~~------ 148 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KGF--------------TVLDIDDWQQT------ 148 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CCC--------------eEEehhhhhcc------
Confidence 35678999999999999999998889999999 556444433 322 12233446543
Q ss_pred CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
+.+||+|.|-.++=....+..|++.+++.|+|+|.++++.-
T Consensus 149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 35899999999999899999999999999999999998854
No 175
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.79 E-value=7.2e-08 Score=76.89 Aligned_cols=106 Identities=19% Similarity=0.141 Sum_probs=74.1
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
+..+|.+|||-|.|+|.++.++++. | .+|+..|. ++..+.|++|++.++. .+++++...|..+.-
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----------~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----------DDNVTVHHRDVCEEG 105 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----------CTTEEEEES-GGCG-
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----------CCCceeEecceeccc
Confidence 4558999999999999999999975 3 47999999 8899999999999865 467899988875422
Q ss_pred CcccCCCCccEEEEcccccCCcChHhHHHHHHHhh-CCCcEEEEEEe
Q 028673 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALS-GPKTTILVMFS 182 (205)
Q Consensus 137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l-~~~g~~~i~~~ 182 (205)
........+|.|+. | ...+...+..+.+.| ++||.+.+-.|
T Consensus 106 ~~~~~~~~~DavfL-D----lp~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 106 FDEELESDFDAVFL-D----LPDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp -STT-TTSEEEEEE-E----SSSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred ccccccCcccEEEE-e----CCCHHHHHHHHHHHHhcCCceEEEECC
Confidence 11122467998877 3 234556777778888 78887655443
No 176
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.77 E-value=8.7e-08 Score=79.05 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=88.5
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCC
Q 028673 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (205)
Q Consensus 42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (205)
...||+.+..- ....+|..|||=-||||-+-+.+...|++++++|+ ..|++-++.|++.-+.
T Consensus 182 ~P~lAR~mVNL-------a~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i---------- 244 (347)
T COG1041 182 DPRLARAMVNL-------ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGI---------- 244 (347)
T ss_pred CHHHHHHHHHH-------hccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCc----------
Confidence 45677777654 34557889999999999999999999999999999 6799999999988753
Q ss_pred CCCceEEEEe-ecCCCCCcccCCCCccEEEEcccccCCc----------ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 121 LLGSIQAVEL-DWGNEDHIKAVAPPFDYIIGTDVVYAEH----------LLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 121 ~~~~i~~~~~-dw~~~~~~~~~~~~fD~Ii~~d~~y~~~----------~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
....+... |..+. +.....+|.|+. |+.|-.. ....+++.+.+.|++||.+.+..+
T Consensus 245 --~~~~~~~~~Da~~l---pl~~~~vdaIat-DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 245 --EDYPVLKVLDATNL---PLRDNSVDAIAT-DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred --CceeEEEecccccC---CCCCCccceEEe-cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 12222222 33333 333446999887 6666532 266788888999999999999988
No 177
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.76 E-value=7.4e-08 Score=74.21 Aligned_cols=109 Identities=16% Similarity=0.121 Sum_probs=76.5
Q ss_pred eEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc-----
Q 028673 67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI----- 138 (205)
Q Consensus 67 ~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~----- 138 (205)
+|||||||||--+..+|+.-. ...-+|. ++.+..++..+...+.. ....-..+|.......
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~-----------Nv~~P~~lDv~~~~w~~~~~~ 96 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP-----------NVRPPLALDVSAPPWPWELPA 96 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc-----------ccCCCeEeecCCCCCcccccc
Confidence 699999999999999998744 5778899 55666777766655431 1112233443333111
Q ss_pred ccCCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 139 KAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
.....+||.|++..+++-. +..+.|++...++|++||.+++--+....
T Consensus 97 ~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~ 146 (204)
T PF06080_consen 97 PLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRD 146 (204)
T ss_pred ccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccC
Confidence 1135689999999999874 45678999999999999998888665443
No 178
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=7.5e-08 Score=82.55 Aligned_cols=125 Identities=13% Similarity=0.078 Sum_probs=93.6
Q ss_pred cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCC
Q 028673 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS 119 (205)
Q Consensus 41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (205)
++.+|-.++..+. ....++.++|+.||||.+|+.+|+...+|+++++ +++++-|+.|+..|++
T Consensus 367 ~aevLys~i~e~~-------~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi--------- 430 (534)
T KOG2187|consen 367 AAEVLYSTIGEWA-------GLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGI--------- 430 (534)
T ss_pred HHHHHHHHHHHHh-------CCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCc---------
Confidence 4677778887763 3445688999999999999999999999999999 8999999999999987
Q ss_pred CCCCceEEEEeecCCCCCcccCC--CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 120 DLLGSIQAVELDWGNEDHIKAVA--PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 120 ~~~~~i~~~~~dw~~~~~~~~~~--~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
.+++++...-.+........ ..-+++...|+-- ......+++.+..+-++.-.+|++-..+.
T Consensus 431 ---sNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 431 ---SNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPRRLVYVSCNPHT 494 (534)
T ss_pred ---cceeeeecchhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCccceEEEEcCHHH
Confidence 57788875333332111111 2345455445443 56778899999998888899999877664
No 179
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.75 E-value=1.3e-07 Score=76.04 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=55.7
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
..++.+|||+|||+|.++..+++.+.+|+++|. +.+++.++.++... .++++...|..+...
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~--------------~~v~v~~~D~~~~~~--- 89 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLY--------------ERLEVIEGDALKVDL--- 89 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcC--------------CcEEEEECchhcCCh---
Confidence 346789999999999999999999989999999 77888888765321 357777766554431
Q ss_pred CCCCcc---EEEEccccc
Q 028673 141 VAPPFD---YIIGTDVVY 155 (205)
Q Consensus 141 ~~~~fD---~Ii~~d~~y 155 (205)
..+| +|+++-+++
T Consensus 90 --~~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 90 --PDFPKQLKVVSNLPYN 105 (253)
T ss_pred --hHcCCcceEEEcCChh
Confidence 1455 788875533
No 180
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.75 E-value=7.4e-08 Score=79.84 Aligned_cols=106 Identities=20% Similarity=0.123 Sum_probs=80.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
.|.+|+|+-||.|..++.+|++|+. |+++|+ |.+++.+++|+++|+. ...+....+|-.... ..
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v-----------~~~v~~i~gD~rev~---~~ 253 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV-----------EGRVEPILGDAREVA---PE 253 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-----------cceeeEEeccHHHhh---hc
Confidence 4889999999999999999999987 999999 8999999999999975 345777776655443 22
Q ss_pred CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFS 187 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~ 187 (205)
.+.+|-|+++-+- ....++....++++++|.+..-...+...
T Consensus 254 ~~~aDrIim~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 254 LGVADRIIMGLPK----SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred cccCCEEEeCCCC----cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 2689999998333 33456666667777788766655444443
No 181
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.73 E-value=4.7e-08 Score=76.76 Aligned_cols=128 Identities=20% Similarity=0.182 Sum_probs=85.5
Q ss_pred cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhc--cCCC
Q 028673 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRIS--QMNP 117 (205)
Q Consensus 41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~--~~~~ 117 (205)
....|.+|+... ....+.+||.-|||.|.-.+.+|..|.+|+++|+ +.+++.+.+ .|+..-. ....
T Consensus 22 ~~p~L~~~~~~l--------~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~---e~~~~~~~~~~~~ 90 (218)
T PF05724_consen 22 PNPALVEYLDSL--------ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFE---ENNLEPTVTSVGG 90 (218)
T ss_dssp STHHHHHHHHHH--------TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHH---HCTTEEECTTCTT
T ss_pred CCHHHHHHHHhc--------CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHH---HhccCCCcccccc
Confidence 377888888762 1235679999999999999999999999999999 677777632 2211000 0000
Q ss_pred -CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEE-EEEE
Q 028673 118 -GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTI-LVMF 181 (205)
Q Consensus 118 -~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~-~i~~ 181 (205)
.....++|++...|.-+... ...++||+|+-.-++.. ++..+.-.+.+.++|+|||.+ +++.
T Consensus 91 ~~~~~~~~i~~~~gDfF~l~~--~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 91 FKRYQAGRITIYCGDFFELPP--EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITL 156 (218)
T ss_dssp EEEETTSSEEEEES-TTTGGG--SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred eeeecCCceEEEEcccccCCh--hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 00123467777755544321 12247999987665543 677888999999999999993 4443
No 182
>PRK01581 speE spermidine synthase; Validated
Probab=98.73 E-value=8.3e-08 Score=80.10 Aligned_cols=107 Identities=19% Similarity=0.112 Sum_probs=72.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHH---HhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVE---WNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~---~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
..++||++|||+|.....+.+.. .+|+++|+ +++++.++.... .|... -..+++++...|..+.-
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~--------~~DpRV~vvi~Da~~fL- 220 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSA--------FFDNRVNVHVCDAKEFL- 220 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcccc--------CCCCceEEEECcHHHHH-
Confidence 45799999999998877777764 47999999 789999996311 11100 11357777775544321
Q ss_pred cccCCCCccEEEEcccccCCc------C-hHhHHHHHHHhhCCCcEEEEEEe
Q 028673 138 IKAVAPPFDYIIGTDVVYAEH------L-LEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~~y~~~------~-~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
....++||+|++. +. .+. . -..+++.+++.|+|||.+++...
T Consensus 221 -~~~~~~YDVIIvD-l~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 221 -SSPSSLYDVIIID-FP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred -HhcCCCccEEEEc-CC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 2234689999985 22 211 1 24688999999999999877644
No 183
>PLN02366 spermidine synthase
Probab=98.68 E-value=2e-07 Score=76.86 Aligned_cols=108 Identities=15% Similarity=0.011 Sum_probs=73.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
..++||++|||.|.....+++.. .+|+++|+ +++++.+++.+...... -..+++++...|-...-. ..
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~--------~~dpRv~vi~~Da~~~l~-~~ 161 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG--------FDDPRVNLHIGDGVEFLK-NA 161 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc--------cCCCceEEEEChHHHHHh-hc
Confidence 46799999999999988888873 36999999 77999999987542110 113577887755322110 01
Q ss_pred CCCCccEEEEcccccCCc-----ChHhHHHHHHHhhCCCcEEEEEE
Q 028673 141 VAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
..++||+|++ |..-... .-..+++.++++|+|||.++.-.
T Consensus 162 ~~~~yDvIi~-D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 162 PEGTYDAIIV-DSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred cCCCCCEEEE-cCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 1458999997 3321111 13468899999999999986643
No 184
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.67 E-value=1e-07 Score=72.65 Aligned_cols=107 Identities=18% Similarity=0.181 Sum_probs=71.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCE-----------EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEee
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCN-----------VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD 131 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~-----------v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~d 131 (205)
++..|||--||+|.+.+.++..+.. ++++|+ +++++.++.|++..+. ...+.+...|
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----------~~~i~~~~~D 96 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----------EDYIDFIQWD 96 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------------CGGEEEEE--
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----------CCceEEEecc
Confidence 5679999999999999998876443 679999 8899999999988754 3457777766
Q ss_pred cCCCCCcccCCCCccEEEEcccccCC--------cChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 132 WGNEDHIKAVAPPFDYIIGTDVVYAE--------HLLEPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 132 w~~~~~~~~~~~~fD~Ii~~d~~y~~--------~~~~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
..+.. .....+|.|++++++-.. ..+..+++.+.+.+++ ..+++....+.
T Consensus 97 ~~~l~---~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~ 154 (179)
T PF01170_consen 97 ARELP---LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNRE 154 (179)
T ss_dssp GGGGG---GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCC
T ss_pred hhhcc---cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHH
Confidence 55543 335689999998877552 2234566677777777 44555444333
No 185
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.65 E-value=5.3e-08 Score=72.72 Aligned_cols=77 Identities=21% Similarity=0.055 Sum_probs=55.8
Q ss_pred eEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCc
Q 028673 67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF 145 (205)
Q Consensus 67 ~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~f 145 (205)
.|+|+.||.|--++.+|+.+.+|+++|+ +.-++.++.|++.-+. .+++++...||.+..........+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv-----------~~~I~~i~gD~~~~~~~~~~~~~~ 70 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGV-----------ADNIDFICGDFFELLKRLKSNKIF 70 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT------------GGGEEEEES-HHHHGGGB------
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEeCCHHHHHhhccccccc
Confidence 6999999999999999999999999999 8899999999998865 368999999887753222112228
Q ss_pred cEEEEcccc
Q 028673 146 DYIIGTDVV 154 (205)
Q Consensus 146 D~Ii~~d~~ 154 (205)
|+|+++++-
T Consensus 71 D~vFlSPPW 79 (163)
T PF09445_consen 71 DVVFLSPPW 79 (163)
T ss_dssp SEEEE---B
T ss_pred cEEEECCCC
Confidence 999998765
No 186
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.60 E-value=2.1e-07 Score=77.43 Aligned_cols=141 Identities=16% Similarity=0.075 Sum_probs=81.3
Q ss_pred ccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccH-HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhc
Q 028673 36 TTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRIS 113 (205)
Q Consensus 36 ~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl-~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~ 113 (205)
..-|--++++..|+... ....++.+|||||||-|- +.-.....-..++++|+ +++++.|++..+.......
T Consensus 41 fNNwvKs~LI~~~~~~~-------~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~ 113 (331)
T PF03291_consen 41 FNNWVKSVLIQKYAKKV-------KQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNN 113 (331)
T ss_dssp HHHHHHHHHHHHHCHCC-------CCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT
T ss_pred HhHHHHHHHHHHHHHhh-------hccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccc
Confidence 34577788888887643 122267899999999864 34333333346999999 7789988887743221000
Q ss_pred cCCCCCCCCCceEEEEeecCCCC---CcccCCCCccEEEEcccccC----CcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 114 QMNPGSDLLGSIQAVELDWGNED---HIKAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 114 ~~~~~~~~~~~i~~~~~dw~~~~---~~~~~~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
.... ...-...+...|-.... .......+||+|=+--++|+ .+....+++.+..+|+|||.++.+.+-..
T Consensus 114 ~~~~--~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 114 SKQY--RFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp -HTS--EECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cccc--cccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 0000 00011233332222110 01111358999988877766 34456799999999999999999987544
No 187
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.59 E-value=5.6e-07 Score=66.72 Aligned_cols=119 Identities=13% Similarity=0.138 Sum_probs=82.8
Q ss_pred cccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC---EEEEEcC-cchHHHHHHHHHHhhhhh
Q 028673 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRI 112 (205)
Q Consensus 37 ~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (205)
.+=++|-.+|+-|.+.. +.-.|..|||+|.|||.+.-.+.++|. .++++++ ++....+.+..
T Consensus 28 aI~PsSs~lA~~M~s~I-------~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------- 93 (194)
T COG3963 28 AILPSSSILARKMASVI-------DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------- 93 (194)
T ss_pred eecCCcHHHHHHHHhcc-------CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-------
Confidence 45577888888887752 344678999999999999999999875 3999999 77666555432
Q ss_pred ccCCCCCCCCCceEEEEeecCCCCC--cccCCCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEE
Q 028673 113 SQMNPGSDLLGSIQAVELDWGNEDH--IKAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILV 179 (205)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~dw~~~~~--~~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i 179 (205)
+.+.+.+.|--+... .....+.||.|+++=++-.... --++++.+...+..||.++-
T Consensus 94 ----------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 94 ----------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred ----------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 233444544333321 1123567999999977765433 34788888888888777553
No 188
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=6.8e-07 Score=68.62 Aligned_cols=110 Identities=20% Similarity=0.242 Sum_probs=74.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CCE---EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALL-GCN---VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~-g~~---v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
..+|.+.||+|+|||.++-.+++. |+. ++++|. ++.++..++|+...-.. ++. ..--...++.+...|-...
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~-~e~-~~~~~~~~l~ivvGDgr~g- 156 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITT-SES-SSKLKRGELSIVVGDGRKG- 156 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccC-chh-hhhhccCceEEEeCCcccc-
Confidence 557899999999999999888855 443 599999 99999999999865310 000 0001123455555443333
Q ss_pred CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.....+||.|.+. .....+.+.+...|+++|++++-..
T Consensus 157 --~~e~a~YDaIhvG------Aaa~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 157 --YAEQAPYDAIHVG------AAASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred --CCccCCcceEEEc------cCccccHHHHHHhhccCCeEEEeec
Confidence 2345699999876 4556677777778889998877643
No 189
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.56 E-value=3.4e-07 Score=70.79 Aligned_cols=109 Identities=14% Similarity=0.064 Sum_probs=75.9
Q ss_pred CeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 66 KRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
..+||||||.|-..+.+|+... .++|+|+ ...+..+...+...+. .|+.+...|....-.....+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l------------~Nv~~~~~da~~~l~~~~~~ 86 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL------------KNVRFLRGDARELLRRLFPP 86 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT------------SSEEEEES-CTTHHHHHSTT
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc------------cceEEEEccHHHHHhhcccC
Confidence 3799999999999999998754 6999999 7778877777776653 58888886655532112235
Q ss_pred CCccEEEEc--ccccCCc------ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 143 PPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 143 ~~fD~Ii~~--d~~y~~~------~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
+++|-|..+ |+-.... .-+.+++.+++.|+|||.+.+..-....
T Consensus 87 ~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y 138 (195)
T PF02390_consen 87 GSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEY 138 (195)
T ss_dssp TSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHH
T ss_pred CchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 688888665 3322211 3458999999999999999888765544
No 190
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.55 E-value=4.2e-06 Score=76.47 Aligned_cols=153 Identities=13% Similarity=0.031 Sum_probs=96.7
Q ss_pred EEEEEEcCeEEEEEeCCCCccc---cc----cccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 028673 13 VINLEVLGHQLQFSQDPNSKHL---GT----TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL 85 (205)
Q Consensus 13 ~~~~~~~~~~~~i~q~~~~~~~---g~----~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~ 85 (205)
.+.+.+.....++.-+..+... |. ..-+--..||.-|..... -...+..++|-+||+|.+.+.+|..
T Consensus 138 ~i~~~~~~~~~~l~ld~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a~------w~~~~~~l~DP~CGSGTilIEAa~~ 211 (702)
T PRK11783 138 RINARLNKGEATISLDLSGESLHQRGYRQATGEAPLKENLAAAILLRSG------WPQEGTPLLDPMCGSGTLLIEAAMM 211 (702)
T ss_pred EEEEEEeCCEEEEEEECCCCchhhccCccCCCCCCCcHHHHHHHHHHcC------CCCCCCeEEccCCCccHHHHHHHHH
Confidence 4555566666777666543321 11 122223456665554310 1124678999999999999988753
Q ss_pred C--------------------------------------------CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCC
Q 028673 86 G--------------------------------------------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (205)
Q Consensus 86 g--------------------------------------------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (205)
+ .+++++|+ +++++.++.|+..++.
T Consensus 212 ~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~---------- 281 (702)
T PRK11783 212 AADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGV---------- 281 (702)
T ss_pred HhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCC----------
Confidence 1 25899999 8899999999999865
Q ss_pred CCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC----cChHhHHHHHHHhhC---CCcEEEEEEee
Q 028673 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSG---PKTTILVMFSL 183 (205)
Q Consensus 121 ~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~l~---~~g~~~i~~~~ 183 (205)
.+.+.+...|+.+.... ...++||+|++|+++... .....+.+.+.+.++ +|+.+++....
T Consensus 282 -~~~i~~~~~D~~~~~~~-~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~~ 349 (702)
T PRK11783 282 -AELITFEVKDVADLKNP-LPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSSS 349 (702)
T ss_pred -CcceEEEeCChhhcccc-cccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 34678888777665321 113479999999887542 223344444444433 78887776653
No 191
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.50 E-value=7.6e-07 Score=72.64 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=49.3
Q ss_pred CCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHh-hhhhccCCCCCCCCCceEEEEeecCC-C-CCc
Q 028673 65 GKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGN-E-DHI 138 (205)
Q Consensus 65 ~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~i~~~~~dw~~-~-~~~ 138 (205)
..++||+|+|. .+..+..++ .|-+++|||+ +.+++.|++|++.| .+ .++|.+....-.. . ...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L-----------~~~I~l~~~~~~~~i~~~i 171 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL-----------ESRIELRKQKNPDNIFDGI 171 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T------------TTTEEEEE--ST-SSTTTS
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc-----------ccceEEEEcCCccccchhh
Confidence 45899999997 466776665 4789999999 78999999999999 43 5678876643211 1 111
Q ss_pred ccCCCCccEEEEcccccCCcC
Q 028673 139 KAVAPPFDYIIGTDVVYAEHL 159 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~ 159 (205)
....+.||+.+|++++|....
T Consensus 172 ~~~~e~~dftmCNPPFy~s~~ 192 (299)
T PF05971_consen 172 IQPNERFDFTMCNPPFYSSQE 192 (299)
T ss_dssp TT--S-EEEEEE-----SS--
T ss_pred hcccceeeEEecCCccccChh
Confidence 223468999999999997443
No 192
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.46 E-value=9.2e-07 Score=67.61 Aligned_cols=96 Identities=20% Similarity=0.281 Sum_probs=68.6
Q ss_pred eEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673 67 RVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (205)
Q Consensus 67 ~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~ 143 (205)
+++|+|+|.|.+|+.+|-.. .+|+++|- ..=+..++.-+..-+. +++.+......+ .....
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L------------~nv~v~~~R~E~----~~~~~ 114 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL------------SNVEVINGRAEE----PEYRE 114 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-------------SSEEEEES-HHH----TTTTT
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC------------CCEEEEEeeecc----cccCC
Confidence 79999999999999999764 46999998 5434444444443332 367888865554 22467
Q ss_pred CccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
+||+|++- ....+..+++.+..+++++|.+++.-.
T Consensus 115 ~fd~v~aR----Av~~l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 115 SFDVVTAR----AVAPLDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp -EEEEEEE----SSSSHHHHHHHHGGGEEEEEEEEEEES
T ss_pred CccEEEee----hhcCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 89999985 456788999999999999998766544
No 193
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.43 E-value=1.2e-06 Score=65.63 Aligned_cols=83 Identities=11% Similarity=-0.016 Sum_probs=62.5
Q ss_pred EEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHH
Q 028673 90 ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIF 168 (205)
Q Consensus 90 ~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~ 168 (205)
+++|. ++|++.++++...... ....++++...|..+. +..+++||+|+++.++.+..+...+++.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~---------~~~~~i~~~~~d~~~l---p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~ 68 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR---------SCYKCIEWIEGDAIDL---PFDDCEFDAVTMGYGLRNVVDRLRAMKEMY 68 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc---------cCCCceEEEEechhhC---CCCCCCeeEEEecchhhcCCCHHHHHHHHH
Confidence 47999 7899999876543211 0123577877655443 344668999999999988889999999999
Q ss_pred HhhCCCcEEEEEEeec
Q 028673 169 ALSGPKTTILVMFSLS 184 (205)
Q Consensus 169 ~~l~~~g~~~i~~~~r 184 (205)
+.|+|||.+++..-.+
T Consensus 69 rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 69 RVLKPGSRVSILDFNK 84 (160)
T ss_pred HHcCcCeEEEEEECCC
Confidence 9999999998886543
No 194
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.43 E-value=2.1e-06 Score=70.01 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=77.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC---Cc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HI 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~---~~ 138 (205)
++..+++||||-|--.+-.-+.|.. ++++|+ +-.++.|++..+........ ..-.+.+...|..... ..
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~------~~f~a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKK------FIFTAVFIAADCFKERLMDLL 190 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhc------ccceeEEEEeccchhHHHHhc
Confidence 4678999999998655555566765 999999 55889888776643211000 0012345554433221 11
Q ss_pred ccCCCCccEEEEcccccC----CcChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673 139 KAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILVMFSLSMFS 187 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~ 187 (205)
...+++||+|-+--++|+ .+...-++..+.++|+|||.++-+.|.+..-
T Consensus 191 e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~I 243 (389)
T KOG1975|consen 191 EFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVI 243 (389)
T ss_pred cCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHH
Confidence 222445999977766655 3456678999999999999999998866543
No 195
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.41 E-value=2.2e-06 Score=67.63 Aligned_cols=109 Identities=12% Similarity=-0.008 Sum_probs=78.6
Q ss_pred CeEEEeCCCccHHHHHHHHhCCE--EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 66 KRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~g~~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
..+||||||.|-.-+.+|+...+ ++|+|+ ...+..+.+.+...++ .|+.+...|.......-..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l------------~Nlri~~~DA~~~l~~~~~~ 117 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL------------KNLRLLCGDAVEVLDYLIPD 117 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC------------CcEEEEcCCHHHHHHhcCCC
Confidence 57999999999999999999875 999999 7777666666665542 26788776655443333334
Q ss_pred CCccEEEEc--ccccCCc------ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 143 PPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 143 ~~fD~Ii~~--d~~y~~~------~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
++.|-|..+ |+-.-.. ..+.+++.+.+.|+|||.+.+..-....
T Consensus 118 ~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y 169 (227)
T COG0220 118 GSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEY 169 (227)
T ss_pred CCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHH
Confidence 588888665 2222211 2458999999999999999998765553
No 196
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.37 E-value=6.1e-07 Score=67.76 Aligned_cols=97 Identities=21% Similarity=0.222 Sum_probs=72.4
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673 65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~ 143 (205)
...+.|||+|+|.+|..+|....+|++++. |...+.+++|+..++. .++.+...|..+-+ -.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~------------~n~evv~gDA~~y~-----fe 95 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD------------VNWEVVVGDARDYD-----FE 95 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC------------cceEEEeccccccc-----cc
Confidence 367999999999999999999778999999 8888999999877763 57888886554433 13
Q ss_pred CccEEEEc--ccccCCcChHhHHHHHHHhhCCCcEEE
Q 028673 144 PFDYIIGT--DVVYAEHLLEPLLQTIFALSGPKTTIL 178 (205)
Q Consensus 144 ~fD~Ii~~--d~~y~~~~~~~ll~~~~~~l~~~g~~~ 178 (205)
.-|+|+|- |...-.+..-++++.+.+.|+.+++++
T Consensus 96 ~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 96 NADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 56878764 222334445577777777888777765
No 197
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.35 E-value=1.4e-06 Score=67.31 Aligned_cols=119 Identities=15% Similarity=0.142 Sum_probs=67.8
Q ss_pred CCeEEEeCCCcc--HHHH--HHHHh-----C--CEEEEEcC-cchHHHHHHHHH-Hhhhh----------h-ccCCC---
Q 028673 65 GKRVIELGAGCG--VAGF--GMALL-----G--CNVITTDQ-IEVLPLLKRNVE-WNTSR----------I-SQMNP--- 117 (205)
Q Consensus 65 ~~~VLdlGcGtG--l~sl--~~a~~-----g--~~v~~~D~-~~~l~~~~~n~~-~n~~~----------~-~~~~~--- 117 (205)
.-+|+-.||+|| ..|+ .+... + .+|+|||+ +.+++.|++=+= .+... . ...+.
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 458999999999 3444 44441 2 26999999 778887764220 00000 0 00000
Q ss_pred -CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 118 -GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 118 -~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
+......|.+...+..+. .....+||+|+|-.++-+ .+....+++.+++.|+|||.+++...-.-.
T Consensus 112 v~~~lr~~V~F~~~NL~~~---~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~l~ 180 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDP---DPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSESLP 180 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--ST
T ss_pred EChHHcCceEEEecccCCC---CcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCccCC
Confidence 012345678888777661 223568999999998833 556679999999999999999998654444
No 198
>PLN02823 spermine synthase
Probab=98.34 E-value=3e-06 Score=70.67 Aligned_cols=106 Identities=18% Similarity=0.200 Sum_probs=72.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
..++||.||+|.|..+..+.+.. .+|+++|+ +++++.+++++..+... -..+++++...|-... +..
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~--------~~dprv~v~~~Da~~~--L~~ 172 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA--------FCDKRLELIINDARAE--LEK 172 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc--------ccCCceEEEEChhHHH--Hhh
Confidence 35789999999999888777753 46999999 88999999987654211 0135677776443322 122
Q ss_pred CCCCccEEEEcccccCCc--------ChHhHHH-HHHHhhCCCcEEEEEE
Q 028673 141 VAPPFDYIIGTDVVYAEH--------LLEPLLQ-TIFALSGPKTTILVMF 181 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~--------~~~~ll~-~~~~~l~~~g~~~i~~ 181 (205)
..++||+|+. |+. .+. .-..+++ .+++.|+|||.+++-.
T Consensus 173 ~~~~yDvIi~-D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 173 RDEKFDVIIG-DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred CCCCccEEEe-cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 3468999997 432 210 1236777 8899999999876643
No 199
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.34 E-value=7.9e-07 Score=69.36 Aligned_cols=107 Identities=20% Similarity=0.190 Sum_probs=75.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
+|.+|||-+.|.|..++.+.++|| .|+.++. +.++++++.|==..+. ....+.++..|..+.-. ...
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l----------~~~~i~iilGD~~e~V~-~~~ 202 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSREL----------FEIAIKIILGDAYEVVK-DFD 202 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccc----------cccccEEecccHHHHHh-cCC
Confidence 688999999999999999999999 6999999 8888888765211110 01235666644333211 123
Q ss_pred CCCccEEEEcccccCCc---ChHhHHHHHHHhhCCCcEEEEEE
Q 028673 142 APPFDYIIGTDVVYAEH---LLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~---~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
+.+||+||--++-+... .-+.+.+.+.+.|+|||.++--.
T Consensus 203 D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 203 DESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred ccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 66899998866666532 24578999999999999976543
No 200
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.33 E-value=5.3e-07 Score=69.93 Aligned_cols=107 Identities=17% Similarity=0.057 Sum_probs=70.6
Q ss_pred CCCeEEEeCCCccHHHHHH-HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 64 KGKRVIELGAGCGVAGFGM-ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~-a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
...+.||.|||.|.++-.+ .....+|-.+|. +..++.|++.+..... ...++......+. .+.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~------------~v~~~~~~gLQ~f---~P~ 119 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP------------RVGEFYCVGLQDF---TPE 119 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC------------CEEEEEES-GGG-------
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC------------CcceEEecCHhhc---cCC
Confidence 4568999999999999755 455567999999 7788888876544211 1233444333322 233
Q ss_pred CCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 142 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
..+||+|++-.|+-|- .++-.+++.++..|+|+|.+++-.+.-.
T Consensus 120 ~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~ 165 (218)
T PF05891_consen 120 EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSS 165 (218)
T ss_dssp TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred CCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCC
Confidence 5699999999999764 4566899999999999999988765433
No 201
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.33 E-value=2.4e-05 Score=61.65 Aligned_cols=133 Identities=19% Similarity=0.191 Sum_probs=84.9
Q ss_pred ccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHh
Q 028673 32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWN 108 (205)
Q Consensus 32 ~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n 108 (205)
.+.+...++.++.=+.|+.++ .++.|++||=+|=+ =+.|+++|.. .++|+.+|+ +.+++.+++.++..
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~--------gdL~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~ 90 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAER--------GDLEGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEE 90 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHT--------T-STT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHhc--------CcccCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc
Confidence 345667778888888899885 67899999999843 3667777765 457999999 66999999999988
Q ss_pred hhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCC-CcEEEEEEeeccch
Q 028673 109 TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGP-KTTILVMFSLSMFS 187 (205)
Q Consensus 109 ~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~-~g~~~i~~~~r~~~ 187 (205)
+. .+++...|..+.-+. ...++||+++. |+.|-.+....++....+.|+. |+..|+++..+..+
T Consensus 91 gl-------------~i~~~~~DlR~~LP~-~~~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s 155 (243)
T PF01861_consen 91 GL-------------PIEAVHYDLRDPLPE-ELRGKFDVFFT-DPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEAS 155 (243)
T ss_dssp T---------------EEEE---TTS---T-TTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--
T ss_pred CC-------------ceEEEEecccccCCH-HHhcCCCEEEe-CCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCc
Confidence 75 478888887766422 23579998887 8889888888899888888874 54889999888754
Q ss_pred h
Q 028673 188 L 188 (205)
Q Consensus 188 ~ 188 (205)
.
T Consensus 156 ~ 156 (243)
T PF01861_consen 156 P 156 (243)
T ss_dssp H
T ss_pred H
Confidence 4
No 202
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.31 E-value=5.8e-06 Score=68.31 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=70.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---------CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecC
Q 028673 64 KGKRVIELGAGCGVAGFGMALL---------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 133 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~---------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~ 133 (205)
.+.+|+|-.||+|.+-+.+.+. ..+++++|+ +.++..++.|+..++... ....+...|.-
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~----------~~~~i~~~d~l 115 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN----------SNINIIQGDSL 115 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC----------BGCEEEES-TT
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc----------ccccccccccc
Confidence 5678999999999877777652 346999999 789999999987765421 12234443322
Q ss_pred CCCCcccCCCCccEEEEcccccCC--c-------------------ChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 134 NEDHIKAVAPPFDYIIGTDVVYAE--H-------------------LLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 134 ~~~~~~~~~~~fD~Ii~~d~~y~~--~-------------------~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
..... ....+||+|++++++-.. . ..-.++..+.+.|+++|++.+..+..
T Consensus 116 ~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 116 ENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp TSHSC-TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred ccccc-ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 22111 124689999999887433 0 01146777888899999988888754
No 203
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.29 E-value=6.7e-06 Score=66.35 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=76.7
Q ss_pred CCeEEEeCCCcc--HHHH--HHHHhC-------CEEEEEcC-cchHHHHHHHHHH--hh---hhh-------ccCC-C--
Q 028673 65 GKRVIELGAGCG--VAGF--GMALLG-------CNVITTDQ-IEVLPLLKRNVEW--NT---SRI-------SQMN-P-- 117 (205)
Q Consensus 65 ~~~VLdlGcGtG--l~sl--~~a~~g-------~~v~~~D~-~~~l~~~~~n~~~--n~---~~~-------~~~~-~-- 117 (205)
.-+|+-.||+|| -.|+ .+.... .+|+|||+ ..+++.|+.=+=. +. ... .+.. +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 458999999999 4444 444432 25999999 6688887642211 10 000 0000 0
Q ss_pred --CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccc-cC-CcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 118 --GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV-YA-EHLLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 118 --~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~-y~-~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
+......|.+..++...... ..+.||+|+|-+|+ |. ...-..+++.++..|+|||.+++...-...
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~~ 246 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETIP 246 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcccC
Confidence 11234456666655554432 45689999999887 33 556679999999999999999998765554
No 204
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.29 E-value=1.5e-05 Score=69.43 Aligned_cols=105 Identities=17% Similarity=0.218 Sum_probs=72.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
+|.+|||++||.|-=+..+|.. + ..|++.|+ +.-++.+++|+++.++ .++.+...|-.....
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------------~nv~v~~~D~~~~~~-- 178 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------------SNVALTHFDGRVFGA-- 178 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCchhhhhh--
Confidence 6789999999999888888865 2 36999999 7788999999998764 345665544332211
Q ss_pred cCCCCccEEEEccc------ccCCc----------------ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 140 AVAPPFDYIIGTDV------VYAEH----------------LLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~------~y~~~----------------~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.....||.|+.--+ +.... .-..++....++|+|||+++.+..
T Consensus 179 ~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 179 ALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred hchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 12357999984211 11110 124678888889999999876654
No 205
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.27 E-value=7.9e-06 Score=72.36 Aligned_cols=81 Identities=15% Similarity=0.049 Sum_probs=52.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC----------CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeec
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG----------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW 132 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g----------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw 132 (205)
.+.+|||.|||+|.+.+.++... ..++++|+ +.+++.++.|+...+. ..+.+...+.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------------~~~~i~~~d~ 98 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------------LEINVINFNS 98 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------------CCceeeeccc
Confidence 45689999999998888777532 24899999 7899999998876531 0122222221
Q ss_pred CCCCC--cccCCCCccEEEEcccccC
Q 028673 133 GNEDH--IKAVAPPFDYIIGTDVVYA 156 (205)
Q Consensus 133 ~~~~~--~~~~~~~fD~Ii~~d~~y~ 156 (205)
-.... .....++||+||+|+++-.
T Consensus 99 l~~~~~~~~~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 99 LSYVLLNIESYLDLFDIVITNPPYGR 124 (524)
T ss_pred ccccccccccccCcccEEEeCCCccc
Confidence 11100 0111358999999998854
No 206
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.25 E-value=7.1e-06 Score=64.02 Aligned_cols=95 Identities=20% Similarity=0.244 Sum_probs=66.1
Q ss_pred CCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
+++++|+|+|.|++|+.+|-.. .+|+.+|- ..=+..++.-...-+ .+++++......+.. .
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~------------L~nv~i~~~RaE~~~---~- 131 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG------------LENVEIVHGRAEEFG---Q- 131 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC------------CCCeEEehhhHhhcc---c-
Confidence 6899999999999999998654 35999997 443334443333322 235777775444443 1
Q ss_pred CCC-ccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673 142 APP-FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV 179 (205)
Q Consensus 142 ~~~-fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i 179 (205)
..+ ||+|.+- ....+..+.+.+..++++||.++.
T Consensus 132 ~~~~~D~vtsR----Ava~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 132 EKKQYDVVTSR----AVASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ccccCcEEEee----hccchHHHHHHHHHhcccCCcchh
Confidence 123 9999884 446788999999999999888653
No 207
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=2.1e-05 Score=62.99 Aligned_cols=79 Identities=15% Similarity=0.087 Sum_probs=59.4
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
..++.+|||+|+|.|.++..+++++++|+++++ +.+++.+++.... .++++++..|.-..+-...
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~--------------~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP--------------YDNLTVINGDALKFDFPSL 93 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc--------------ccceEEEeCchhcCcchhh
Confidence 345789999999999999999999999999999 6788888876541 2467888866665541111
Q ss_pred CCCCccEEEEcccccC
Q 028673 141 VAPPFDYIIGTDVVYA 156 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~ 156 (205)
. .++.|++|=+++-
T Consensus 94 -~-~~~~vVaNlPY~I 107 (259)
T COG0030 94 -A-QPYKVVANLPYNI 107 (259)
T ss_pred -c-CCCEEEEcCCCcc
Confidence 1 6888999865553
No 208
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.25 E-value=6.2e-06 Score=67.32 Aligned_cols=117 Identities=23% Similarity=0.250 Sum_probs=74.7
Q ss_pred CeEEEeCCCcc--HHHHHH--HHh------CCEEEEEcC-cchHHHHHHHHHHh----hhhh-------cc-CCC-----
Q 028673 66 KRVIELGAGCG--VAGFGM--ALL------GCNVITTDQ-IEVLPLLKRNVEWN----TSRI-------SQ-MNP----- 117 (205)
Q Consensus 66 ~~VLdlGcGtG--l~sl~~--a~~------g~~v~~~D~-~~~l~~~~~n~~~n----~~~~-------~~-~~~----- 117 (205)
-+|+-.||.|| ..|+++ ... ..+|+|||+ +.+++.|+.-+=.. +... .. .++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 58999999999 444444 332 136999999 77998887653110 0000 00 000
Q ss_pred --CCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 118 --GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 118 --~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
+......|.+...+..+.. . ...++||+|+|-.++.+ .+....+++.+.+.|+|||.+++...-.
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~-~-~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEs 265 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQ-W-AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSEN 265 (287)
T ss_pred EEChHHHccCEEEcccCCCCC-C-ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCccc
Confidence 0123345667766655422 1 12468999999887744 4567899999999999999988876533
No 209
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.23 E-value=5e-06 Score=64.68 Aligned_cols=114 Identities=18% Similarity=0.272 Sum_probs=57.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHH-HhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMA-LLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a-~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
..++..++|||||.|-+-+.+| ..+++ ++++++ +...+.++...+.......... ....++.+...|..+.+..
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g---~~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYG---KRPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT---B---EEEEECS-TTTHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhh---cccccceeeccCccccHhH
Confidence 3357799999999998877666 44665 999999 7666666554433211000000 0123455555444432211
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV 179 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i 179 (205)
...-..-|+|+++...|.++....+ ......+++|.+++-
T Consensus 117 ~~~~s~AdvVf~Nn~~F~~~l~~~L-~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 117 KDIWSDADVVFVNNTCFDPDLNLAL-AELLLELKPGARIIS 156 (205)
T ss_dssp HHHGHC-SEEEE--TTT-HHHHHHH-HHHHTTS-TT-EEEE
T ss_pred hhhhcCCCEEEEeccccCHHHHHHH-HHHHhcCCCCCEEEE
Confidence 1111357999999999977766666 444455777777653
No 210
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.21 E-value=1.4e-05 Score=63.77 Aligned_cols=96 Identities=21% Similarity=0.307 Sum_probs=69.9
Q ss_pred cccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhh
Q 028673 33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSR 111 (205)
Q Consensus 33 ~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~ 111 (205)
+.|.++-.-+.++...+... ..-++..|||+|-|||.++..+...|++|+++++ +.|+..+++.+..-
T Consensus 35 d~GQHilkNp~v~~~I~~ka--------~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gt--- 103 (315)
T KOG0820|consen 35 DFGQHILKNPLVIDQIVEKA--------DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGT--- 103 (315)
T ss_pred ccchhhhcCHHHHHHHHhcc--------CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCC---
Confidence 45666555566655555442 3446678999999999999999999999999999 88888887765432
Q ss_pred hccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcc
Q 028673 112 ISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD 152 (205)
Q Consensus 112 ~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d 152 (205)
+.....++...|.-..+ .+.||.+|++-
T Consensus 104 --------p~~~kLqV~~gD~lK~d-----~P~fd~cVsNl 131 (315)
T KOG0820|consen 104 --------PKSGKLQVLHGDFLKTD-----LPRFDGCVSNL 131 (315)
T ss_pred --------CccceeeEEecccccCC-----CcccceeeccC
Confidence 23457788886655443 45799888853
No 211
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=98.20 E-value=3.5e-06 Score=71.20 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=64.0
Q ss_pred eEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673 67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (205)
Q Consensus 67 ~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~ 144 (205)
.|||+|+|||++|+++++.|+. |++++. ..|.+.+++-...|+. .++|.++.-.-.+..... ..+
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~-----------SdkI~vInkrStev~vg~--~~R 135 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM-----------SDKINVINKRSTEVKVGG--SSR 135 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC-----------ccceeeeccccceeeecC--cch
Confidence 5899999999999999999986 999999 8899999999999965 567777763222221111 234
Q ss_pred ccEEEEccccc---CCcChHhHHHHHHHhhCCCc
Q 028673 145 FDYIIGTDVVY---AEHLLEPLLQTIFALSGPKT 175 (205)
Q Consensus 145 fD~Ii~~d~~y---~~~~~~~ll~~~~~~l~~~g 175 (205)
-|+++..+..- -+..++.+-.....++++|.
T Consensus 136 adI~v~e~fdtEligeGalps~qhAh~~L~~~nc 169 (636)
T KOG1501|consen 136 ADIAVREDFDTELIGEGALPSLQHAHDMLLVDNC 169 (636)
T ss_pred hhhhhHhhhhhhhhccccchhHHHHHHHhcccCC
Confidence 56555542211 12344444445555566653
No 212
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.19 E-value=5e-06 Score=64.85 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=76.4
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
.+.++|||||.|.++-.+...+-. ++.+|. -.|++.++.. +.+ .+... .-.++.+.++...
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp---------------~i~~~-~~v~DEE~Ldf~e 135 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDP---------------SIETS-YFVGDEEFLDFKE 135 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCC---------------ceEEE-EEecchhcccccc
Confidence 467999999999999988888764 999999 5687776642 112 22222 2224455555567
Q ss_pred CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
+++|+||++--+++..+++.-...++..+||+|.++-+.
T Consensus 136 ns~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 136 NSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred cchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHH
Confidence 899999999999999999999999999999999887653
No 213
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.17 E-value=0.00012 Score=61.53 Aligned_cols=148 Identities=13% Similarity=0.048 Sum_probs=97.2
Q ss_pred EEEEEEcCeEEEEEeCCCCcccccccccc-------HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 028673 13 VINLEVLGHQLQFSQDPNSKHLGTTVWDA-------SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL 85 (205)
Q Consensus 13 ~~~~~~~~~~~~i~q~~~~~~~g~~~W~~-------~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~ 85 (205)
.+...+.+..+++.-+.++...-.+-|+- -..||.-|..- ..-..+..++|-=||+|.+.|.+|..
T Consensus 140 ~i~v~l~~~~~~l~iDttG~sLhkRGyR~~~g~ApLketLAaAil~l-------agw~~~~pl~DPmCGSGTi~IEAAl~ 212 (381)
T COG0116 140 RINVELDKDTATLGIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLL-------AGWKPDEPLLDPMCGSGTILIEAALI 212 (381)
T ss_pred EEEEEEEcCEEEEEEeCCCcchhhccccccCCCCCchHHHHHHHHHH-------cCCCCCCccccCCCCccHHHHHHHHh
Confidence 34455666777777666544322223311 12344444332 12224468999999999999999988
Q ss_pred CC-----------------------------------------EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCC
Q 028673 86 GC-----------------------------------------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLG 123 (205)
Q Consensus 86 g~-----------------------------------------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 123 (205)
+. .++++|+ +.+++.|+.|+...++ .+
T Consensus 213 ~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv-----------~d 281 (381)
T COG0116 213 AANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGV-----------GD 281 (381)
T ss_pred ccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCC-----------Cc
Confidence 74 2779999 8899999999999876 56
Q ss_pred ceEEEEeecCCCCCcccCCCCccEEEEcccccC----Cc----ChHhHHHHHHHhhCCCcEEEEEE
Q 028673 124 SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----EH----LLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 124 ~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~----~~----~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
.|.+...|..+.... ...+|+||+|+++-. .. .+..+.+.+++.++.-+..+++.
T Consensus 282 ~I~f~~~d~~~l~~~---~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 282 LIEFKQADATDLKEP---LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred eEEEEEcchhhCCCC---CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 788888777665421 168999999987633 11 34455566667776666655553
No 214
>PRK00536 speE spermidine synthase; Provisional
Probab=98.17 E-value=2.8e-05 Score=62.64 Aligned_cols=104 Identities=7% Similarity=-0.107 Sum_probs=75.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
.-++||=+|.|-|...-.+.+...+|+.+|+ +++++.+++-+...... . ..+++++.. |-. ....
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~--~------~DpRv~l~~--~~~----~~~~ 137 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEV--K------NNKNFTHAK--QLL----DLDI 137 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHh--h------cCCCEEEee--hhh----hccC
Confidence 3479999999999999999998778999999 77999999866543221 1 234666654 211 1123
Q ss_pred CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
++||+||. |..+. +.+.+.+++.|+|||.++.-......
T Consensus 138 ~~fDVIIv-Ds~~~----~~fy~~~~~~L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 138 KKYDLIIC-LQEPD----IHKIDGLKRMLKEDGVFISVAKHPLL 176 (262)
T ss_pred CcCCEEEE-cCCCC----hHHHHHHHHhcCCCcEEEECCCCccc
Confidence 68999996 65543 57778999999999998876554443
No 215
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.16 E-value=3.8e-05 Score=62.11 Aligned_cols=115 Identities=11% Similarity=-0.028 Sum_probs=88.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C---CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL-G---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~-g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
+..+|||+.||.|..=+-+... . .+|...|+ +..++..++-++.++. .+.+++...|..+.+.+
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL-----------~~i~~f~~~dAfd~~~l 203 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL-----------EDIARFEQGDAFDRDSL 203 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC-----------ccceEEEecCCCCHhHh
Confidence 3458999999999776655443 2 35999999 7789999999988865 34558888887777666
Q ss_pred ccCCCCccEEEEcccccCCcC---hHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673 139 KAVAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILVMFSLSMFSLT 189 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~ 189 (205)
....+++++++.|.++-...+ ....++.+..++.|||.++.+-+...+.++
T Consensus 204 ~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle 257 (311)
T PF12147_consen 204 AALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLE 257 (311)
T ss_pred hccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchH
Confidence 666788999999988755444 445677888889999999988776666655
No 216
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=4.2e-05 Score=60.08 Aligned_cols=116 Identities=18% Similarity=0.194 Sum_probs=79.1
Q ss_pred cccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cc-hHHHHHHHHHHhhhhhc
Q 028673 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IE-VLPLLKRNVEWNTSRIS 113 (205)
Q Consensus 37 ~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~-~l~~~~~n~~~n~~~~~ 113 (205)
.+-+++.-|...+... .-+++|++|||+|+-||-.+..+.+.||+ |+++|. -. .-..++. +
T Consensus 59 yVSRG~~KL~~ale~F-------~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----d----- 122 (245)
T COG1189 59 YVSRGGLKLEKALEEF-------ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----D----- 122 (245)
T ss_pred ccccHHHHHHHHHHhc-------CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----C-----
Confidence 3445688899999886 56789999999999999999999999986 999998 43 3233332 1
Q ss_pred cCCCCCCCCCceEEE-EeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 114 QMNPGSDLLGSIQAV-ELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 114 ~~~~~~~~~~~i~~~-~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
+++.+. ..+...... ....+..|+|++ |+-| -....++..+..++++++.++.-.
T Consensus 123 ---------~rV~~~E~tN~r~l~~-~~~~~~~d~~v~-DvSF--ISL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 123 ---------PRVIVLERTNVRYLTP-EDFTEKPDLIVI-DVSF--ISLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred ---------CcEEEEecCChhhCCH-HHcccCCCeEEE-Eeeh--hhHHHHHHHHHHhcCCCceEEEEe
Confidence 233332 222222221 112347888887 4444 466788889999999988766554
No 217
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.12 E-value=8.1e-05 Score=61.75 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=71.8
Q ss_pred ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCC
Q 028673 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGS 119 (205)
Q Consensus 40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (205)
+++.-|.+.+..............+|+++|||||++|-.+..+.++|++|+++|...+-+. +..+
T Consensus 187 Rs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~----L~~~----------- 251 (357)
T PRK11760 187 RSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQS----LMDT----------- 251 (357)
T ss_pred hHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHh----hhCC-----------
Confidence 4455666665443111000012457899999999999999999999999999997433222 2222
Q ss_pred CCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCC--cEEEEEEee
Q 028673 120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK--TTILVMFSL 183 (205)
Q Consensus 120 ~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~--g~~~i~~~~ 183 (205)
+++.....+--... + ...++|.+++ |++- .+..+.+.+.+.+..| ..+++..+.
T Consensus 252 ---~~V~h~~~d~fr~~--p-~~~~vDwvVc-Dmve---~P~rva~lm~~Wl~~g~cr~aIfnLKl 307 (357)
T PRK11760 252 ---GQVEHLRADGFKFR--P-PRKNVDWLVC-DMVE---KPARVAELMAQWLVNGWCREAIFNLKL 307 (357)
T ss_pred ---CCEEEEeccCcccC--C-CCCCCCEEEE-eccc---CHHHHHHHHHHHHhcCcccEEEEEEEc
Confidence 34555553322221 1 1568999888 6664 3446666666666544 356666554
No 218
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.11 E-value=4e-05 Score=59.85 Aligned_cols=105 Identities=18% Similarity=0.179 Sum_probs=77.2
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC-CC
Q 028673 63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-DH 137 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~-~~ 137 (205)
...+++||||.=||+-++..|.. +.+|+++|+ ++..+...+-.+..+. ..+|++....-.+. ++
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----------~~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----------DHKITFIEGPALESLDE 140 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----------cceeeeeecchhhhHHH
Confidence 36789999999999888888865 778999999 6788888777776654 35677766443322 11
Q ss_pred c--ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 138 I--KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 138 ~--~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
+ ....+.||+++.- .+..+.....+.+.+++++||.+++-.
T Consensus 141 l~~~~~~~tfDfaFvD---adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 141 LLADGESGTFDFAFVD---ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHhcCCCCceeEEEEc---cchHHHHHHHHHHHhhcccccEEEEec
Confidence 1 1135689999885 556666788889999999999877653
No 219
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.09 E-value=1.2e-05 Score=58.50 Aligned_cols=44 Identities=30% Similarity=0.413 Sum_probs=39.6
Q ss_pred eEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhh
Q 028673 67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTS 110 (205)
Q Consensus 67 ~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~ 110 (205)
+|||+|||+|..++.+++.+. +|+++|. +++.+.+++|++.|+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~ 47 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL 47 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC
Confidence 489999999999999998876 5999999 8899999999998854
No 220
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.06 E-value=1.5e-05 Score=64.47 Aligned_cols=92 Identities=20% Similarity=0.288 Sum_probs=65.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
++..|||+|+|+|.++..+++.+.+|+++|. +..++.+++.+.. .+++++...|..+.+......
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~--------------~~~~~vi~~D~l~~~~~~~~~ 95 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS--------------NPNVEVINGDFLKWDLYDLLK 95 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT--------------CSSEEEEES-TTTSCGGGHCS
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh--------------cccceeeecchhccccHHhhc
Confidence 7889999999999999999999989999999 7788888876552 257899887777655333223
Q ss_pred CCccEEEEcccccCCcChHhHHHHHHHhhC
Q 028673 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSG 172 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~ 172 (205)
.....|++|-+ | ..-..++..+...-+
T Consensus 96 ~~~~~vv~NlP-y--~is~~il~~ll~~~~ 122 (262)
T PF00398_consen 96 NQPLLVVGNLP-Y--NISSPILRKLLELYR 122 (262)
T ss_dssp SSEEEEEEEET-G--TGHHHHHHHHHHHGG
T ss_pred CCceEEEEEec-c--cchHHHHHHHhhccc
Confidence 45667888754 4 233455555555333
No 221
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.00 E-value=6.2e-06 Score=66.07 Aligned_cols=123 Identities=15% Similarity=0.215 Sum_probs=71.4
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhh-hh-------ccCCCCCC--------C
Q 028673 60 PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTS-RI-------SQMNPGSD--------L 121 (205)
Q Consensus 60 ~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~-~~-------~~~~~~~~--------~ 121 (205)
+...+|.++||+|||.-+..+..|..-+ +|+++|+ +...+.+++=++.-+. .+ ....+... .
T Consensus 52 ~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 52 SGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp TSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred ccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 4566788999999999877666665555 5999999 6666655554432211 00 00000000 0
Q ss_pred CCce-EEEEeecCCCCCccc---CCCCccEEEEcccccC----CcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 122 LGSI-QAVELDWGNEDHIKA---VAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 122 ~~~i-~~~~~dw~~~~~~~~---~~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
...| ++...|..+...+.. .+++||+|+++-|+-. .+.+...++.+.++|||||.++++.-
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 1112 355666666554433 2346999999877743 34566788888889999999999864
No 222
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=0.00026 Score=59.71 Aligned_cols=114 Identities=19% Similarity=0.157 Sum_probs=77.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC----CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 63 LKGKRVIELGAGCGVAGFGMALLG----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~g----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
.+|.+|||+.++.|-=+..+|.+. ..|++.|. +.=++.++.|+++-+. .++.+...|-.....
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------------~nv~~~~~d~~~~~~ 222 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------------RNVIVVNKDARRLAE 222 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------------CceEEEecccccccc
Confidence 368899999999997777777653 45799999 6688999999998875 244555544333322
Q ss_pred cccCCCCccEEEEccc------ccCC----------------cChHhHHHHHHHhhCCCcEEEEEEeeccchh
Q 028673 138 IKAVAPPFDYIIGTDV------VYAE----------------HLLEPLLQTIFALSGPKTTILVMFSLSMFSL 188 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~------~y~~----------------~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~ 188 (205)
......+||.|+.-.+ +... .....+++...++++|||.++.+...-.+..
T Consensus 223 ~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eE 295 (355)
T COG0144 223 LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEE 295 (355)
T ss_pred cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhc
Confidence 2222336999975222 2110 1133688888899999999998876555543
No 223
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.93 E-value=6.6e-05 Score=66.18 Aligned_cols=110 Identities=11% Similarity=0.008 Sum_probs=73.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
.+..+||||||.|-..+.+|+... .++++|+ ...+..+.+.+...+. .|+.+...+....... .
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l------------~N~~~~~~~~~~~~~~-~ 413 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI------------TNFLLFPNNLDLILND-L 413 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC------------CeEEEEcCCHHHHHHh-c
Confidence 456899999999999999998866 4999999 6655555555544432 4566655443222111 2
Q ss_pred CCCCccEEEEc--ccccCCc------ChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 141 VAPPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 141 ~~~~fD~Ii~~--d~~y~~~------~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
.+.++|-|..+ |+-.... ..+.+++.+++.|+|||.+.+..-....
T Consensus 414 ~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y 467 (506)
T PRK01544 414 PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENY 467 (506)
T ss_pred CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence 34678888665 3332221 2458999999999999999988665443
No 224
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=97.92 E-value=8.9e-06 Score=65.29 Aligned_cols=124 Identities=23% Similarity=0.213 Sum_probs=77.5
Q ss_pred ccccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhh
Q 028673 32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS 110 (205)
Q Consensus 32 ~~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~ 110 (205)
..+|..+|++++.|.+++.++ +....+++|.++|||.++..+.+++..--|...|- ..+.-+...+...+..
T Consensus 65 ~~tg~~~w~~al~L~~~l~~~-------~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~~~~~l~~~~~~~~~ 137 (262)
T KOG2497|consen 65 ARTGLSVWESALSLEADLRDK-------PDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRCAGLLLEEIILLSRD 137 (262)
T ss_pred HHhccccchHHHHHHHHHhhC-------cccccccchHhhccCHHHHHHHHHhcccceecCCccCcHHHHHHHHHhcccc
Confidence 468999999999999999987 45577889999999999988666665444444444 4343344443333321
Q ss_pred hhccCCCCCCCCCceEEEEeecCCCCCccc-CCCCccEEEEcccccCCcChHhHHHHHHHhh
Q 028673 111 RISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALS 171 (205)
Q Consensus 111 ~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l 171 (205)
.. ....-.....+|......+. ....+|+|+++|++|. .....+++....+|
T Consensus 138 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL 190 (262)
T KOG2497|consen 138 LS--------LEVRDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLL 190 (262)
T ss_pred cc--------ccccccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHH
Confidence 10 01112222333332221111 1234999999999999 77777777777754
No 225
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.92 E-value=3.1e-05 Score=66.76 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=63.9
Q ss_pred eEEEeCCCccHHHHHHHHhCCEEEEE---cC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 67 RVIELGAGCGVAGFGMALLGCNVITT---DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 67 ~VLdlGcGtGl~sl~~a~~g~~v~~~---D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
.+||+|||+|..|..+..++-.+..+ |. +..++.|.+ + |+ -....-.+ ...++..+
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale---R-Gv---------------pa~~~~~~-s~rLPfp~ 179 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE---R-GV---------------PAMIGVLG-SQRLPFPS 179 (506)
T ss_pred EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh---c-Cc---------------chhhhhhc-cccccCCc
Confidence 68999999999999999888753333 33 223333322 1 11 11000001 12234557
Q ss_pred CCccEEEEcccccCCcCh-HhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 143 PPFDYIIGTDVVYAEHLL-EPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~~~-~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
..||+|-++.|+-..... .-++-.+.++|+|||.++++.+.-+
T Consensus 180 ~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 180 NAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 899999999988653332 4578889999999999999987544
No 226
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.90 E-value=0.00017 Score=55.75 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=64.5
Q ss_pred cccccH--HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhc
Q 028673 37 TVWDAS--VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRIS 113 (205)
Q Consensus 37 ~~W~~~--~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~ 113 (205)
.-||-- ..+.+||... ..+..|-|+|||-+.++..+ ..+..|...|+ .. |
T Consensus 53 ~~WP~nPvd~iI~~l~~~----------~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-----------n----- 105 (219)
T PF05148_consen 53 KKWPVNPVDVIIEWLKKR----------PKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-----------N----- 105 (219)
T ss_dssp CTSSS-HHHHHHHHHCTS-----------TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------S-----
T ss_pred hcCCCCcHHHHHHHHHhc----------CCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-----------C-----
Confidence 456543 3456666532 24568999999999887443 23456999998 42 1
Q ss_pred cCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc-hhHHHH
Q 028673 114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF-SLTFFC 192 (205)
Q Consensus 114 ~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~-~~~~~~ 192 (205)
-.+...|... .+..++..|++|.+=.+- -.++..+++...+.|++||.++|+.....+ ....|.
T Consensus 106 -----------~~Vtacdia~---vPL~~~svDv~VfcLSLM-GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~ 170 (219)
T PF05148_consen 106 -----------PRVTACDIAN---VPLEDESVDVAVFCLSLM-GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFI 170 (219)
T ss_dssp -----------TTEEES-TTS----S--TT-EEEEEEES----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHH
T ss_pred -----------CCEEEecCcc---CcCCCCceeEEEEEhhhh-CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHH
Confidence 1234444333 344567899998873332 457889999999999999999999765444 444444
Q ss_pred H
Q 028673 193 W 193 (205)
Q Consensus 193 ~ 193 (205)
.
T Consensus 171 ~ 171 (219)
T PF05148_consen 171 K 171 (219)
T ss_dssp H
T ss_pred H
Confidence 3
No 227
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.88 E-value=9.5e-05 Score=60.23 Aligned_cols=105 Identities=14% Similarity=0.029 Sum_probs=74.1
Q ss_pred CeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
++||-+|-|.|...-.+.+.. .+++++|+ +++++.+++-+..-.... + .+++.+...|-.+.- ....
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~-------~-dpRv~i~i~Dg~~~v--~~~~ 147 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGA-------D-DPRVEIIIDDGVEFL--RDCE 147 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCccccc-------C-CCceEEEeccHHHHH--HhCC
Confidence 599999999999999999887 46999999 789999998765432110 1 356777664433221 1223
Q ss_pred CCccEEEEcccccCCcC-----hHhHHHHHHHhhCCCcEEEEEE
Q 028673 143 PPFDYIIGTDVVYAEHL-----LEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~~-----~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
.+||+|+.- +.-.... -..+.+.+++.|+++|.++.-.
T Consensus 148 ~~fDvIi~D-~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 148 EKFDVIIVD-STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CcCCEEEEc-CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 489999974 3222111 3689999999999999877763
No 228
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.85 E-value=0.00017 Score=56.09 Aligned_cols=106 Identities=16% Similarity=0.078 Sum_probs=65.1
Q ss_pred EEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673 68 VIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (205)
Q Consensus 68 VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~ 144 (205)
|.|+||--|.+++.+.+.|. +++++|+ +.-++.++.|++.++. .+++++...|--+ .+. ..+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l-----------~~~i~~rlgdGL~--~l~-~~e~ 66 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL-----------EDRIEVRLGDGLE--VLK-PGED 66 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------------TTTEEEEE-SGGG--G---GGG-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------cccEEEEECCccc--ccC-CCCC
Confidence 68999999999999999987 5999999 7799999999998854 4678887743211 111 1223
Q ss_pred ccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673 145 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT 189 (205)
Q Consensus 145 fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~ 189 (205)
.|.|+.+.+-- ..+..+++.....++....+++.-......+.
T Consensus 67 ~d~ivIAGMGG--~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR 109 (205)
T PF04816_consen 67 VDTIVIAGMGG--ELIIEILEAGPEKLSSAKRLILQPNTHAYELR 109 (205)
T ss_dssp --EEEEEEE-H--HHHHHHHHHTGGGGTT--EEEEEESS-HHHHH
T ss_pred CCEEEEecCCH--HHHHHHHHhhHHHhccCCeEEEeCCCChHHHH
Confidence 78887774432 23445555544445555566665554444444
No 229
>PRK10742 putative methyltransferase; Provisional
Probab=97.84 E-value=8e-05 Score=59.21 Aligned_cols=85 Identities=19% Similarity=0.287 Sum_probs=56.7
Q ss_pred eEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCc
Q 028673 67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF 145 (205)
Q Consensus 67 ~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~f 145 (205)
+|||+-+|+|..|+.++.+|++|+++|. +.+...++.|++.-... .+... ....++++...+-.+. +.....+|
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~-~~~~~--~~~~ri~l~~~da~~~--L~~~~~~f 165 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYAD-AEIGG--WLQERLQLIHASSLTA--LTDITPRP 165 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhc-cccch--hhhceEEEEeCcHHHH--HhhCCCCC
Confidence 8999999999999999999999999999 77888888888763210 00000 0013455555333222 11123479
Q ss_pred cEEEEcccccCC
Q 028673 146 DYIIGTDVVYAE 157 (205)
Q Consensus 146 D~Ii~~d~~y~~ 157 (205)
|+|+. |+.|..
T Consensus 166 DVVYl-DPMfp~ 176 (250)
T PRK10742 166 QVVYL-DPMFPH 176 (250)
T ss_pred cEEEE-CCCCCC
Confidence 99997 666664
No 230
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.83 E-value=7.7e-05 Score=59.73 Aligned_cols=113 Identities=15% Similarity=0.107 Sum_probs=76.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
+.++||=||-|.|...-.+.+.. .+|+++|+ +.+++.+++-+...... ...+++++...|-... +..
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--------~~d~r~~i~~~Dg~~~--l~~ 145 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--------LDDPRVRIIIGDGRKF--LKE 145 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--------GGSTTEEEEESTHHHH--HHT
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--------cCCCceEEEEhhhHHH--HHh
Confidence 56899999999998888888775 47999999 78999999887664321 1135777776433221 112
Q ss_pred CCC-CccEEEEcccccC---C--cChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673 141 VAP-PFDYIIGTDVVYA---E--HLLEPLLQTIFALSGPKTTILVMFSLSMFS 187 (205)
Q Consensus 141 ~~~-~fD~Ii~~d~~y~---~--~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~ 187 (205)
... +||+|+. |+.-. . -.-.++++.+++.|+|+|.+++-.......
T Consensus 146 ~~~~~yDvIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~ 197 (246)
T PF01564_consen 146 TQEEKYDVIIV-DLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLH 197 (246)
T ss_dssp SSST-EEEEEE-ESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTT
T ss_pred ccCCcccEEEE-eCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccc
Confidence 233 8999987 33221 1 123589999999999999988877554443
No 231
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.82 E-value=0.00029 Score=51.55 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=38.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHH------hCCEEEEEcC-cchHHHHHHHHHHhh
Q 028673 63 LKGKRVIELGAGCGVAGFGMAL------LGCNVITTDQ-IEVLPLLKRNVEWNT 109 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~------~g~~v~~~D~-~~~l~~~~~n~~~n~ 109 (205)
.+..+|+|+|||.|.+|..++. .+.+|+++|. +..++.+....+...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 3567899999999999999998 3567999999 777777777666543
No 232
>PHA01634 hypothetical protein
Probab=97.80 E-value=4.2e-05 Score=54.29 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=45.7
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhh
Q 028673 60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTS 110 (205)
Q Consensus 60 ~~~~~~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~ 110 (205)
.-++++++|+|+|++.|-.++..+.+||+ |++.+. +...+..+.|++.|.+
T Consensus 24 ~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 24 MLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred heeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 45778999999999999999999999997 999999 7788999999998853
No 233
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.79 E-value=0.00071 Score=48.29 Aligned_cols=104 Identities=22% Similarity=0.226 Sum_probs=65.6
Q ss_pred EEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC-
Q 028673 68 VIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA- 142 (205)
Q Consensus 68 VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~- 142 (205)
++|+|||+|... .++... ..++++|. +.++...+..... .. ...+.+...+.... ......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~-~~~~~~~ 117 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AG-----------LGLVDFVVADALGG-VLPFEDS 117 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC-----------CCceEEEEeccccC-CCCCCCC
Confidence 999999999876 444443 37899999 6666663333221 10 00145555554431 112222
Q ss_pred CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
..||++ ......+.......+..+.+.++|+|.+++....+..
T Consensus 118 ~~~d~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 118 ASFDLV-ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred CceeEE-eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 479999 5544443333788999999999999999998776554
No 234
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.78 E-value=0.00016 Score=56.23 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=73.2
Q ss_pred cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCC
Q 028673 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG 118 (205)
Q Consensus 41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~ 118 (205)
+|.+|.+||....... .......++||+||=+.-..+ +..+. +|+.+|+ +.
T Consensus 31 SSK~lv~wL~~~~~~~---~~~~~~lrlLEVGals~~N~~--s~~~~fdvt~IDLns~---------------------- 83 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRP---KNGRPKLRLLEVGALSTDNAC--STSGWFDVTRIDLNSQ---------------------- 83 (219)
T ss_pred hhHHHHHHhhhhcccc---ccccccceEEeecccCCCCcc--cccCceeeEEeecCCC----------------------
Confidence 6889999997753211 011122589999996432222 22232 5999998 42
Q ss_pred CCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChH---hHHHHHHHhhCCCcE-----EEEEEeecc
Q 028673 119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE---PLLQTIFALSGPKTT-----ILVMFSLSM 185 (205)
Q Consensus 119 ~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~---~ll~~~~~~l~~~g~-----~~i~~~~r~ 185 (205)
...+.+.|+-+..-.....++||+|.+|-++-+..... .+++.+.++|+|+|. ++++.|..-
T Consensus 84 -----~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 84 -----HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred -----CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 12344555554432223467899999999997655433 799999999999999 999987443
No 235
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.76 E-value=9.4e-06 Score=62.37 Aligned_cols=94 Identities=22% Similarity=0.261 Sum_probs=72.6
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673 65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~ 143 (205)
..++||||+|-|-++..++..-.+|++|+. ..|...+++. |- -.....+|.+. +-
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk---~y---------------nVl~~~ew~~t------~~ 168 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK---NY---------------NVLTEIEWLQT------DV 168 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc---CC---------------ceeeehhhhhc------Cc
Confidence 478999999999999999887777999999 5576655541 10 12345566654 34
Q ss_pred CccEEEEcccccCCcChHhHHHHHHHhhCC-CcEEEEEEe
Q 028673 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGP-KTTILVMFS 182 (205)
Q Consensus 144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~-~g~~~i~~~ 182 (205)
+||+|.|-.++-.....-.|++.++..+.| +|+++++..
T Consensus 169 k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLV 208 (288)
T KOG3987|consen 169 KLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALV 208 (288)
T ss_pred eeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEE
Confidence 899999988887777888999999999988 899888753
No 236
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.72 E-value=0.00024 Score=55.07 Aligned_cols=105 Identities=18% Similarity=0.129 Sum_probs=76.2
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
.+|.+||++|=|.|++.-.+-.+.. +=+.++. |++++.++.+.-.. ..++.+....|.+.....
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-------------k~nViil~g~WeDvl~~L- 165 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-------------KENVIILEGRWEDVLNTL- 165 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-------------ccceEEEecchHhhhccc-
Confidence 3688999999999998887776655 3567777 88988888764322 357888999999875332
Q ss_pred CCCCccEEEEcccc-cCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 141 VAPPFDYIIGTDVV-YAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~-y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.++.||-|+- |.+ -+-++...+.+.+.++|||+|.+-....
T Consensus 166 ~d~~FDGI~y-DTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 166 PDKHFDGIYY-DTYSELYEDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred cccCcceeEe-echhhHHHHHHHHHHHHhhhcCCCceEEEecC
Confidence 3567998875 333 2234556777888899999998766543
No 237
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.72 E-value=2.9e-05 Score=59.11 Aligned_cols=50 Identities=28% Similarity=0.159 Sum_probs=35.8
Q ss_pred ccHHHHHHHHhhhccCCCCCCCCC-CCCeEEEeCCCccHHHHHHHHhC---CEEEEEcCc
Q 028673 40 DASVVFVKYLEKNCRKGRFCPSKL-KGKRVIELGAGCGVAGFGMALLG---CNVITTDQI 95 (205)
Q Consensus 40 ~~~~~La~~l~~~~~~~~~~~~~~-~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~~ 95 (205)
+++.-|.+.+.... .... ++.+||||||++|-.+..+.+++ .+|+++|+.
T Consensus 4 Ra~~KL~ei~~~~~------~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~ 57 (181)
T PF01728_consen 4 RAAFKLYEIDEKFK------IFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLG 57 (181)
T ss_dssp THHHHHHHHHHTTS------SS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESS
T ss_pred HHHHHHHHHHHHCC------CCCcccccEEEEcCCcccceeeeeeecccccceEEEEecc
Confidence 35566666666541 0112 45799999999999999999988 569999993
No 238
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.70 E-value=0.00058 Score=55.22 Aligned_cols=114 Identities=21% Similarity=0.193 Sum_probs=71.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcc-hHHHHHHHHHHhhhh------h-----ccCC-------------
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSR------I-----SQMN------------- 116 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~-~l~~~~~n~~~n~~~------~-----~~~~------------- 116 (205)
...+.+||-=|||.|.++..+|++|..+.+.|.+- | ++..|.-.|... + ..++
T Consensus 54 ~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~M--ll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 54 DRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFM--LLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHH--HHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 33457899999999999999999999999999954 5 333444444311 0 0000
Q ss_pred C----C--CCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCC---cChHhHHHHHHHhhCCCcEEEEE
Q 028673 117 P----G--SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---HLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 117 ~----~--~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~---~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
| . .....++.....|+.+........++||.|+.+ |.. +++-.-+++|.++|||||..+=.
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~ 201 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLKPGGYWINF 201 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhccCCEEEec
Confidence 0 0 012334555554444333222224799999988 443 44557788999999999954433
No 239
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.66 E-value=0.0012 Score=51.68 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=83.5
Q ss_pred cccccccc-HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEEcC-cchHHHHHHHHHHh
Q 028673 34 LGTTVWDA-SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWN 108 (205)
Q Consensus 34 ~g~~~W~~-~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g~--~v~~~D~-~~~l~~~~~n~~~n 108 (205)
...++|+- ---||..+...... ....+|.+||-||+.+|..--.++.- |. .|++++. +...+.+-.-++.
T Consensus 46 ~eYR~W~P~RSKLaAai~~Gl~~----~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~- 120 (229)
T PF01269_consen 46 VEYRVWNPFRSKLAAAILKGLEN----IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK- 120 (229)
T ss_dssp EEEEEE-TTT-HHHHHHHTT-S------S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-
T ss_pred cceeecCchhhHHHHHHHcCccc----cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-
Confidence 35667843 23455555443111 23446889999999999776666654 43 5999999 6544433322221
Q ss_pred hhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673 109 TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFS 187 (205)
Q Consensus 109 ~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~ 187 (205)
..|+..+-.|-..+......-+..|+|++- + -.++..+-+.......||+||.++++...|...
T Consensus 121 -------------R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D-V-aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD 184 (229)
T PF01269_consen 121 -------------RPNIIPILEDARHPEKYRMLVEMVDVIFQD-V-AQPDQARIAALNARHFLKPGGHLIISIKARSID 184 (229)
T ss_dssp -------------STTEEEEES-TTSGGGGTTTS--EEEEEEE---SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-
T ss_pred -------------CCceeeeeccCCChHHhhcccccccEEEec-C-CChHHHHHHHHHHHhhccCCcEEEEEEecCccc
Confidence 135676776767666665556789988884 3 356677788888899999999999999876653
No 240
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.65 E-value=0.00058 Score=54.43 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=65.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~ 143 (205)
....|-|+|||-+-++. ..-.+|+..|+-. .| -++...|..+. +..++
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------~~----------------~~V~~cDm~~v---Pl~d~ 227 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------VN----------------ERVIACDMRNV---PLEDE 227 (325)
T ss_pred CceEEEecccchhhhhh---ccccceeeeeeec----------CC----------------CceeeccccCC---cCccC
Confidence 45689999999886554 3344588888722 11 24455454543 34577
Q ss_pred CccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc-hhHHHH
Q 028673 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF-SLTFFC 192 (205)
Q Consensus 144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~-~~~~~~ 192 (205)
+.|+++.+-.+ .-.++..+++.+.+.|++||.+||+.-...+ ....|+
T Consensus 228 svDvaV~CLSL-Mgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~ 276 (325)
T KOG3045|consen 228 SVDVAVFCLSL-MGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFV 276 (325)
T ss_pred cccEEEeeHhh-hcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHH
Confidence 89999876333 2457789999999999999999999764444 444443
No 241
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.60 E-value=0.00017 Score=59.15 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=38.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHH
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEW 107 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~ 107 (205)
++..+||.+||.|--+..+++.. .+|+++|. +++++.+++++..
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 56799999999999999999874 57999999 8899999887643
No 242
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.59 E-value=0.0011 Score=53.78 Aligned_cols=103 Identities=18% Similarity=0.135 Sum_probs=62.9
Q ss_pred CeEEEeCCCc-cHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHH-HhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 66 KRVIELGAGC-GVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVE-WNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 66 ~~VLdlGcGt-Gl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
++|+=||||. -+.++.+++. ++.|+.+|+ +++++.+++-++ ..+. ..++.+...|-.+..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----------~~~m~f~~~d~~~~~--- 187 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----------SKRMSFITADVLDVT--- 187 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------------SSEEEEES-GGGG----
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----------cCCeEEEecchhccc---
Confidence 5999999996 7888888864 456999999 889999988776 3333 357888875544332
Q ss_pred cCCCCccEEEEccccc-CCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 140 AVAPPFDYIIGTDVVY-AEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y-~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
..-..||+|+.+-.+. ..+.-..+++.+.+.++||+.+++=+.
T Consensus 188 ~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 188 YDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred cccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 2235899998887776 356778999999999999998877644
No 243
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.57 E-value=0.00055 Score=55.70 Aligned_cols=103 Identities=18% Similarity=0.288 Sum_probs=58.5
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
++..++|||+|||+|....++... + .+++++|. +.|++.++.-++.. . ... ...|.....
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~-~-------------~~~--~~~~~~~~~ 94 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG-P-------------NNR--NAEWRRVLY 94 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc-c-------------ccc--cchhhhhhh
Confidence 566789999999999766555432 2 25999999 67888777644332 1 000 111111100
Q ss_pred c-ccCCCCccEEEEcccccCCcC--hHhHHHHHHHhhCCCcEEEEEEe
Q 028673 138 I-KAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 138 ~-~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
. .....+.|+|+++-++-.... ...+++.+...+++ .++++.+
T Consensus 95 ~~~~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 95 RDFLPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred cccccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 0 011223499999988866444 33555555555554 5544443
No 244
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.47 E-value=0.00074 Score=56.03 Aligned_cols=109 Identities=12% Similarity=0.070 Sum_probs=66.5
Q ss_pred CCCeEEEeCCCccHHHH-HHH---Hh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEE--EEeecCC
Q 028673 64 KGKRVIELGAGCGVAGF-GMA---LL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA--VELDWGN 134 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl-~~a---~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~--~~~dw~~ 134 (205)
.+..++|||||.|.=.- .+. +. ...++++|+ .++++.+..++.... .+.+.+ ...+..+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~------------~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN------------FSHVRCAGLLGTYDD 143 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc------------CCCeEEEEEEecHHH
Confidence 45689999999985322 222 22 346999999 678888888877221 233444 4444433
Q ss_pred CCC-ccc--CCCCccEEEEc-ccccC--CcChHhHHHHHHH-hhCCCcEEEEEEeec
Q 028673 135 EDH-IKA--VAPPFDYIIGT-DVVYA--EHLLEPLLQTIFA-LSGPKTTILVMFSLS 184 (205)
Q Consensus 135 ~~~-~~~--~~~~fD~Ii~~-d~~y~--~~~~~~ll~~~~~-~l~~~g~~~i~~~~r 184 (205)
... ++. ......+++.- ..+-+ +.....+++.+++ .++|++.+++..-..
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 211 111 12234555433 35544 4455589999999 999999999986533
No 245
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.0013 Score=50.89 Aligned_cols=99 Identities=18% Similarity=0.199 Sum_probs=64.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC-C--EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc-
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG-C--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK- 139 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g-~--~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~- 139 (205)
++.+|+||||-.|-.+..+++.. . +|+++|+.++- .-..+.+.+.|..+.+...
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------------------~~~~V~~iq~d~~~~~~~~~ 102 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------------------PIPGVIFLQGDITDEDTLEK 102 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------------------cCCCceEEeeeccCccHHHH
Confidence 56899999999999999999873 3 39999994421 1234778888877765322
Q ss_pred ----cCCCCccEEEEcccccCC------------cChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 140 ----AVAPPFDYIIGTDVVYAE------------HLLEPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 140 ----~~~~~fD~Ii~~d~~y~~------------~~~~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
....++|+|++ |.--.. ......++.....|+|+|.+++-.-.-.
T Consensus 103 l~~~l~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 103 LLEALGGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred HHHHcCCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 12334698885 332221 1122445555667899999887654333
No 246
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.35 E-value=8.9e-05 Score=57.57 Aligned_cols=81 Identities=19% Similarity=0.107 Sum_probs=64.2
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc-ccCC
Q 028673 65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAVA 142 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~-~~~~ 142 (205)
-..|+|--||.|--.+..|..|+.|+++|+ |.=+..++.|++.-|+ .++|++++.||-+.... ....
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI-----------~~rItFI~GD~ld~~~~lq~~K 163 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGV-----------PDRITFICGDFLDLASKLKADK 163 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecC-----------CceeEEEechHHHHHHHHhhhh
Confidence 357999999999999999999999999999 7789999999998876 35899999998776422 2223
Q ss_pred CCccEEEEcccccC
Q 028673 143 PPFDYIIGTDVVYA 156 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~ 156 (205)
..+|+|..+++--.
T Consensus 164 ~~~~~vf~sppwgg 177 (263)
T KOG2730|consen 164 IKYDCVFLSPPWGG 177 (263)
T ss_pred heeeeeecCCCCCC
Confidence 35778877765533
No 247
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.26 E-value=0.0089 Score=46.65 Aligned_cols=109 Identities=14% Similarity=0.088 Sum_probs=72.1
Q ss_pred CCeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 65 GKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
+.++.|+||-.|++++++.+.+. .+++.|+ +..++.+.+|+..++. .+++++...|- ...-..
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l-----------~~~i~vr~~dg---l~~l~~ 82 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL-----------SERIDVRLGDG---LAVLEL 82 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC-----------cceEEEeccCC---ccccCc
Confidence 45699999999999999998864 4999999 8899999999999853 56777777443 222223
Q ss_pred CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchhH
Q 028673 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSLT 189 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~ 189 (205)
+..+|+|+.+.+-- ..+..+++.-...++.--.+++.-..+...++
T Consensus 83 ~d~~d~ivIAGMGG--~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR 128 (226)
T COG2384 83 EDEIDVIVIAGMGG--TLIREILEEGKEKLKGVERLILQPNIHTYELR 128 (226)
T ss_pred cCCcCEEEEeCCcH--HHHHHHHHHhhhhhcCcceEEECCCCCHHHHH
Confidence 45799988773321 23444455445555433345554444444443
No 248
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.008 Score=48.36 Aligned_cols=105 Identities=13% Similarity=0.028 Sum_probs=69.5
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
+..+|.+|||-|+|+|.+|.++++.- .+++..|+ ..-.+.+.+.++..+. .+++++..-|....-
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----------~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----------GDNVTVTHRDVCGSG 170 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----------CcceEEEEeecccCC
Confidence 34579999999999999999999874 36999999 5556677777777764 578888887776543
Q ss_pred CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.. .....+|.|+. |+. .+-..+-.+.+.++.+|.-++++.
T Consensus 171 F~-~ks~~aDaVFL-DlP----aPw~AiPha~~~lk~~g~r~csFS 210 (314)
T KOG2915|consen 171 FL-IKSLKADAVFL-DLP----APWEAIPHAAKILKDEGGRLCSFS 210 (314)
T ss_pred cc-ccccccceEEE-cCC----ChhhhhhhhHHHhhhcCceEEecc
Confidence 11 12456777765 322 222333334446666665555544
No 249
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.13 E-value=7.4e-05 Score=51.68 Aligned_cols=96 Identities=14% Similarity=0.103 Sum_probs=35.2
Q ss_pred EEeCCCccHHHHHHHHh---C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC-
Q 028673 69 IELGAGCGVAGFGMALL---G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV- 141 (205)
Q Consensus 69 LdlGcGtGl~sl~~a~~---g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~- 141 (205)
||+|+..|..++.+++. + .+++++|. +. .+..+++++..+. ..++++...+-.+. +...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~-----------~~~~~~~~g~s~~~--l~~~~ 66 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL-----------SDRVEFIQGDSPDF--LPSLP 66 (106)
T ss_dssp --------------------------EEEESS-------------GGG------------BTEEEEES-THHH--HHHHH
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC-----------CCeEEEEEcCcHHH--HHHcC
Confidence 69999999888777653 2 26999999 53 3344444443322 34577777433221 1111
Q ss_pred CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV 179 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i 179 (205)
..+||+|+. |--+..+....-++.+...++|||.+++
T Consensus 67 ~~~~dli~i-Dg~H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 67 DGPIDLIFI-DGDHSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp H--EEEEEE-ES---HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCEEEEEE-CCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 368999987 4333334455667777778899998765
No 250
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.12 E-value=0.0027 Score=51.98 Aligned_cols=123 Identities=20% Similarity=0.180 Sum_probs=79.9
Q ss_pred cccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEEcC-cchHHHHHHHHHHhhhhh
Q 028673 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRI 112 (205)
Q Consensus 37 ~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (205)
.+++.+-.++..+.. ..++.+|||++|+.|-=+..++..- ..|++.|+ +.-+..++.|+++.+.
T Consensus 68 ~vQd~sS~l~~~~L~----------~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-- 135 (283)
T PF01189_consen 68 YVQDESSQLVALALD----------PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-- 135 (283)
T ss_dssp EEHHHHHHHHHHHHT----------TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---
T ss_pred Eeccccccccccccc----------ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC--
Confidence 355555555555443 2267889999999998887777652 46999999 7788999999988764
Q ss_pred ccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEccc------ccCCc----------------ChHhHHHHHHHh
Q 028673 113 SQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV------VYAEH----------------LLEPLLQTIFAL 170 (205)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~------~y~~~----------------~~~~ll~~~~~~ 170 (205)
.++.+...|...... ......||.|+.-.+ +.... ....+++...++
T Consensus 136 ----------~~v~~~~~D~~~~~~-~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 204 (283)
T PF01189_consen 136 ----------FNVIVINADARKLDP-KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKL 204 (283)
T ss_dssp ----------SSEEEEESHHHHHHH-HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHC
T ss_pred ----------ceEEEEeeccccccc-cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHh
Confidence 345555533332211 112336999976222 11111 123678888889
Q ss_pred h----CCCcEEEEEEe
Q 028673 171 S----GPKTTILVMFS 182 (205)
Q Consensus 171 l----~~~g~~~i~~~ 182 (205)
+ +|||+++.+.-
T Consensus 205 ~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 205 LNIDFKPGGRLVYSTC 220 (283)
T ss_dssp EHHHBEEEEEEEEEES
T ss_pred hcccccCCCeEEEEec
Confidence 9 99999887754
No 251
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.98 E-value=0.0039 Score=51.76 Aligned_cols=94 Identities=15% Similarity=0.038 Sum_probs=65.8
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEEcC--cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~ 143 (205)
...+|+|.|.|.+.-.+...-.+|-+++. +.+++.+... . .+ |.... ++.. .. .+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~-~-~g---------------V~~v~---gdmf--q~-~P 235 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYL-A-PG---------------VEHVA---GDMF--QD-TP 235 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhh-c-CC---------------cceec---cccc--cc-CC
Confidence 56899999999887777776566777766 4455544432 2 21 23333 2221 11 34
Q ss_pred CccEEEEcccccCCc--ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 144 PFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 144 ~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
+-|+|+.-.++++.. +..++++.+++.|+|+|.+++...
T Consensus 236 ~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 236 KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 668999999999854 456999999999999999999876
No 252
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.017 Score=44.53 Aligned_cols=133 Identities=14% Similarity=0.121 Sum_probs=84.6
Q ss_pred cccccc-HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C-CEEEEEcC-cchHHHHHHHHHHhhhh
Q 028673 36 TTVWDA-SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSR 111 (205)
Q Consensus 36 ~~~W~~-~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~ 111 (205)
.+.|+. ---||..+..... .....+|.+||=||+-+|..--..+.- | ..|++++. +.+...+-.-++.-
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~----~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--- 123 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLK----NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--- 123 (231)
T ss_pred eeeeCcchhHHHHHHHcCcc----cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---
Confidence 457754 2234444443211 123457889999999999776666654 4 35999999 66443333222211
Q ss_pred hccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccchh
Q 028673 112 ISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMFSL 188 (205)
Q Consensus 112 ~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~ 188 (205)
.|+--+-.|...++.....-++.|+|+.- +-.+...+-+.......|+++|.++++...|.-..
T Consensus 124 -----------~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D--VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdv 187 (231)
T COG1889 124 -----------PNIIPILEDARKPEKYRHLVEKVDVIYQD--VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDV 187 (231)
T ss_pred -----------CCceeeecccCCcHHhhhhcccccEEEEe--cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccc
Confidence 24555565656555444445567777663 33456677788888999999999999999888754
No 253
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.88 E-value=0.002 Score=52.41 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=34.3
Q ss_pred eEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHH
Q 028673 67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV 105 (205)
Q Consensus 67 ~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~ 105 (205)
+|+||.||.|-+++.+.+.|.+ |.++|+ +.+++..+.|.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~ 42 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANF 42 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhC
Confidence 6999999999999999999998 889999 77888877775
No 254
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.87 E-value=0.0076 Score=48.62 Aligned_cols=120 Identities=19% Similarity=0.209 Sum_probs=83.7
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 60 PSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 60 ~~~~~~~~VLdlGcGtGl~sl~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
..++.|+.|+=+| ---+.|++++..|. +|..+|+ +..++...+-++.-+. .++.+...|..++-
T Consensus 148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~------------~~ie~~~~Dlr~pl 214 (354)
T COG1568 148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY------------NNIEAFVFDLRNPL 214 (354)
T ss_pred ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc------------cchhheeehhcccC
Confidence 4678899999999 56788888887764 5999999 5588888888777654 46788888887764
Q ss_pred CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhC-CCcEEEEEEeeccchhHHHHHHhh
Q 028673 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSG-PKTTILVMFSLSMFSLTFFCWTRI 196 (205)
Q Consensus 137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~-~~g~~~i~~~~r~~~~~~~~~~~~ 196 (205)
+. ....+||+.+. |+.+-...+..++..=...|+ +|+.=|+....|..+.+ .|.++
T Consensus 215 pe-~~~~kFDvfiT-DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressid--kW~ei 271 (354)
T COG1568 215 PE-DLKRKFDVFIT-DPPETIKALKLFLGRGIATLKGEGCAGYFGITRRESSID--KWREI 271 (354)
T ss_pred hH-HHHhhCCeeec-CchhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHH--HHHHH
Confidence 22 23578997665 777766666666655444454 55555555556666655 66554
No 255
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.87 E-value=0.0081 Score=50.33 Aligned_cols=117 Identities=17% Similarity=0.119 Sum_probs=76.7
Q ss_pred CeEEEeCCCccHHHHHHHHhC-C-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 66 KRVIELGAGCGVAGFGMALLG-C-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~g-~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
.+||-||.|-|+..-.+.+.- . +|+.+|+ |+|++.+++|...-.. +..+-..+++++..-|-.+.- ....
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~-----N~~sf~dpRv~Vv~dDAf~wl--r~a~ 363 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRAL-----NQGSFSDPRVTVVNDDAFQWL--RTAA 363 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhh-----ccCCccCCeeEEEeccHHHHH--Hhhc
Confidence 579999999999888888773 3 6999999 8999999976643211 111123346666654332221 1124
Q ss_pred CCccEEEEcccccCCcC-------hHhHHHHHHHhhCCCcEEEEEEeeccchhHHH
Q 028673 143 PPFDYIIGTDVVYAEHL-------LEPLLQTIFALSGPKTTILVMFSLSMFSLTFF 191 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~~-------~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~~~ 191 (205)
..||.||.- .. ++.. -.++...+++.++++|.+++-....+...+.|
T Consensus 364 ~~fD~vIVD-l~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vf 417 (508)
T COG4262 364 DMFDVVIVD-LP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVF 417 (508)
T ss_pred ccccEEEEe-CC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCcee
Confidence 589999874 22 2111 23677778889999999988877666655543
No 256
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.83 E-value=0.0032 Score=53.50 Aligned_cols=101 Identities=26% Similarity=0.246 Sum_probs=71.1
Q ss_pred CCeEEEeCCCccHHHHHHHHh--CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCC-ceEEEEeecCCCCCcc
Q 028673 65 GKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLG-SIQAVELDWGNEDHIK 139 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~-~i~~~~~dw~~~~~~~ 139 (205)
+.+|||-=||||+=|+..++- +. +|++-|+ +++++.+++|++.|+.. + .+.+...|-...-.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~-----------~~~~~v~~~DAn~ll~-- 116 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE-----------DERIEVSNMDANVLLY-- 116 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S-----------GCCEEEEES-HHHHHC--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc-----------CceEEEehhhHHHHhh--
Confidence 458999999999999999987 33 5999999 88999999999999762 2 45665533332211
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.....||+|=. |++ ....+++....+..+.||.++++..
T Consensus 117 ~~~~~fD~IDl-DPf---GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 117 SRQERFDVIDL-DPF---GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp HSTT-EEEEEE---S---S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred hccccCCEEEe-CCC---CCccHhHHHHHHHhhcCCEEEEecc
Confidence 23678998854 333 4567899999999999999999864
No 257
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.80 E-value=0.0047 Score=52.20 Aligned_cols=105 Identities=19% Similarity=0.169 Sum_probs=72.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC-CEEEEEcC-cchHHHHH-HHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLK-RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g-~~v~~~D~-~~~l~~~~-~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
...+..++|+|||.|-+....+..+ +++++.|+ +.-+.... .++... + ..+..+...+..+.
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l-----------~~k~~~~~~~~~~~--- 172 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY-L-----------DNKCNFVVADFGKM--- 172 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH-h-----------hhhcceehhhhhcC---
Confidence 3345589999999999999999875 67999998 43222222 222111 1 11222323222222
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
+..+..||.+.+.+..-+......+++.+.+.++|||.+....
T Consensus 173 ~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 173 PFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred CCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHH
Confidence 2346789999999999999999999999999999999887653
No 258
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.0032 Score=52.40 Aligned_cols=106 Identities=13% Similarity=0.254 Sum_probs=66.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC---EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 61 SKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl~sl~~a~~g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
.++.-+++||+|.|.|....++-..-. +++.++.+.++...-..+..|. .....+|...+-
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv----------------~t~~td~r~s~v 173 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV----------------STEKTDWRASDV 173 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc----------------ccccCCCCCCcc
Confidence 567778999999998864443333211 3666666556666666666663 222355544321
Q ss_pred c----c-cCCCCccEEEEcccccCCcC---hHhHHHHHHHhhCCCcEEEEEEe
Q 028673 138 I----K-AVAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 138 ~----~-~~~~~fD~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
. + .....|++++..+=+...+. +...++.+..++.|||.++|+.+
T Consensus 174 t~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 174 TEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred chhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 1 0 11346888888876665443 34567777788899999998865
No 259
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.64 E-value=0.0049 Score=50.77 Aligned_cols=97 Identities=20% Similarity=0.186 Sum_probs=62.7
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 62 KLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
...|.+||=+|||. |++.+..|+. |+ +|+.+|. ++-++.|++ +-.-. +...... ...+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~---------------~~~~~~~-~~~~~ 229 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATV---------------TDPSSHK-SSPQE 229 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeE---------------Eeecccc-ccHHH
Confidence 44688999999997 9999988876 77 4999999 778888887 22110 0000000 00010
Q ss_pred c------ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 138 I------KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 138 ~------~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
+ ......||+.+-+ .-.+.-+++....++.+|.+.++.
T Consensus 230 ~~~~v~~~~g~~~~d~~~dC------sG~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 230 LAELVEKALGKKQPDVTFDC------SGAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred HHHHHHhhccccCCCeEEEc------cCchHHHHHHHHHhccCCEEEEec
Confidence 0 0112346666554 677788888888899999977764
No 260
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.60 E-value=0.0044 Score=48.73 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=51.4
Q ss_pred CCCeEEEeCCCccH-HH-HHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecC-CC-CCc
Q 028673 64 KGKRVIELGAGCGV-AG-FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG-NE-DHI 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl-~s-l~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~-~~-~~~ 138 (205)
++.++||+|.|.-. .- +-.-..|-+.+++|+ +.+++.|+.++..|-- +...++.....-. .. ...
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~----------l~~~I~lr~qk~~~~if~gi 147 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPG----------LERAIRLRRQKDSDAIFNGI 147 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcc----------hhhheeEEeccCcccccccc
Confidence 44578999887531 11 122245778999999 7799999999999821 1223333321100 00 111
Q ss_pred ccCCCCccEEEEcccccCC
Q 028673 139 KAVAPPFDYIIGTDVVYAE 157 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~ 157 (205)
...++.||+.+||+++|..
T Consensus 148 ig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 148 IGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ccccceeeeEecCCCcchh
Confidence 1225689999999999863
No 261
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.58 E-value=0.057 Score=47.73 Aligned_cols=102 Identities=25% Similarity=0.333 Sum_probs=62.7
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC---
Q 028673 62 KLKGKRVIELGAGC-GVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE--- 135 (205)
Q Consensus 62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~--- 135 (205)
...+.+|+=+|||. |+.++..|+. |++|+++|. ++.++.+++ .+. ++...+-.+.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes----lGA---------------~~v~i~~~e~~~~ 222 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES----MGA---------------EFLELDFEEEGGS 222 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC---------------eEEEecccccccc
Confidence 45688999999997 9999888865 899999999 766665554 222 1111110000
Q ss_pred ---------CC--------cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 136 ---------DH--------IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 136 ---------~~--------~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.+ +......+|+||.+--.-.......+.+...+.++|||.++....
T Consensus 223 ~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 223 GDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred ccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 00 000114689999873332222332335888899999998776643
No 262
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.58 E-value=0.014 Score=48.83 Aligned_cols=96 Identities=25% Similarity=0.228 Sum_probs=61.8
Q ss_pred CCCCCCeEEEeCCC-ccHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 61 SKLKGKRVIELGAG-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 61 ~~~~~~~VLdlGcG-tGl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
...+|++|+=.|+| .|.+++.+|+ .|++|+++|. ++-.+.+++- +. -. ..++.+.+.
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----GA--------------d~--~i~~~~~~~ 222 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----GA--------------DH--VINSSDSDA 222 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----CC--------------cE--EEEcCCchh
Confidence 34468899999997 4677777787 6999999999 6655555542 11 11 222232222
Q ss_pred cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSL 183 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~ 183 (205)
.....+.||+|+.. .. +..+....++|+++|++.++-..
T Consensus 223 ~~~~~~~~d~ii~t------v~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 223 LEAVKEIADAIIDT------VG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hHHhHhhCcEEEEC------CC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 22223349988876 33 56667777888899998777544
No 263
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.42 E-value=0.013 Score=47.32 Aligned_cols=108 Identities=16% Similarity=0.108 Sum_probs=64.0
Q ss_pred eEEEeCCCc---cHHHHHHHHh---CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 67 RVIELGAGC---GVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 67 ~VLdlGcGt---Gl~sl~~a~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
..||||||. |.. -..|+. .++|+-+|. |-++..++.-+..+. .....+...|..+.+.+.
T Consensus 71 QFLDlGsGlPT~~nv-HevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~------------~g~t~~v~aD~r~p~~iL 137 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNV-HEVAQRVAPDARVVYVDNDPVVLAHARALLADNP------------RGRTAYVQADLRDPEAIL 137 (267)
T ss_dssp EEEEET--S--SS-H-HHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T------------TSEEEEEE--TT-HHHHH
T ss_pred eEEEcccCCCCCCCH-hHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC------------CccEEEEeCCCCCHHHHh
Confidence 599999993 332 233333 678999999 667777777655552 123678888877765321
Q ss_pred c--------CCCCccEEEEcccccCC---cChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673 140 A--------VAPPFDYIIGTDVVYAE---HLLEPLLQTIFALSGPKTTILVMFSLSMFS 187 (205)
Q Consensus 140 ~--------~~~~fD~Ii~~d~~y~~---~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~ 187 (205)
. .-.+.=.++...++++. +....++..+...|.||+.+.+++......
T Consensus 138 ~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~ 196 (267)
T PF04672_consen 138 AHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA 196 (267)
T ss_dssp CSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS
T ss_pred cCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC
Confidence 1 01233456667777773 467789999999999999999999876543
No 264
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.29 E-value=0.0078 Score=51.26 Aligned_cols=70 Identities=24% Similarity=0.330 Sum_probs=54.0
Q ss_pred cccccccccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhh
Q 028673 33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS 110 (205)
Q Consensus 33 ~~g~~~W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~ 110 (205)
++|..-|.+ .+..++-.-. +. .-.|..|-|+.||.|-.++-+++.+++|++-|. +++++.++.|+..|.+
T Consensus 226 DfskVYWns-RL~~Eherls---g~----fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv 296 (495)
T KOG2078|consen 226 DFSKVYWNS-RLSHEHERLS---GL----FKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKV 296 (495)
T ss_pred ecceEEeec-cchhHHHHHh---hc----cCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhcccccc
Confidence 456666984 3333332211 11 225678999999999999999999999999999 9999999999999975
No 265
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.26 E-value=0.034 Score=42.49 Aligned_cols=100 Identities=13% Similarity=0.051 Sum_probs=58.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC-C--EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEe-ecCCCCCc-
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG-C--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL-DWGNEDHI- 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g-~--~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~-dw~~~~~~- 138 (205)
++.+|||+||-.|..+..+.++. . .|.++|+-.... ..| +.+... |..++...
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p-------~~G---------------a~~i~~~dvtdp~~~~ 126 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP-------PEG---------------ATIIQGNDVTDPETYR 126 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC-------CCC---------------cccccccccCCHHHHH
Confidence 57899999999999999999874 3 499999732110 011 122221 33332210
Q ss_pred ----ccCCCCccEEEEcccccCC-----cChHhHHHHHHH-------hhCCCcEEEEEEeeccc
Q 028673 139 ----KAVAPPFDYIIGTDVVYAE-----HLLEPLLQTIFA-------LSGPKTTILVMFSLSMF 186 (205)
Q Consensus 139 ----~~~~~~fD~Ii~~d~~y~~-----~~~~~ll~~~~~-------~l~~~g~~~i~~~~r~~ 186 (205)
..++.+.|+|++ |...+. -++..+++.+.+ ++.|+|.+++-.-.-..
T Consensus 127 ki~e~lp~r~VdvVlS-DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 127 KIFEALPNRPVDVVLS-DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred HHHHhCCCCcccEEEe-ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 123568898877 555442 234444444433 35799998887654333
No 266
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.15 E-value=0.015 Score=45.16 Aligned_cols=57 Identities=25% Similarity=0.249 Sum_probs=41.5
Q ss_pred cccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHH
Q 028673 39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKR 103 (205)
Q Consensus 39 W~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~ 103 (205)
-+=.+.|.+.+... ...+|..|||--||+|..++++.+.|-+.+++|+ ++.++.|++
T Consensus 174 ~~kP~~l~~~lI~~--------~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 174 TQKPVELIERLIKA--------STNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp T-S-HHHHHHHHHH--------HS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred ecCCHHHHHHHHHh--------hhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 33467777777664 2336889999999999999999999999999999 777777753
No 267
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.06 E-value=0.019 Score=47.80 Aligned_cols=111 Identities=21% Similarity=0.144 Sum_probs=71.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEEcCc-chHH-------HHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC
Q 028673 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLP-------LLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 134 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~-~~l~-------~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~ 134 (205)
.+|+-|.|=-.|||.+-+.+|..|+-|+++|++ .++. .++.|+++-+.. .--+.+...|..+
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~----------~~fldvl~~D~sn 276 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS----------SQFLDVLTADFSN 276 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCc----------chhhheeeecccC
Confidence 368899999999999999999999999999994 4444 345555554421 1224555555554
Q ss_pred CCCcccCCCCccEEEEcccccCCc----------------------------------ChHhHHHHHHHhhCCCcEEEEE
Q 028673 135 EDHIKAVAPPFDYIIGTDVVYAEH----------------------------------LLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 135 ~~~~~~~~~~fD~Ii~~d~~y~~~----------------------------------~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
.. . ..+-.||.|+| |+-|-.. ....++.-..+.|..||++.+-
T Consensus 277 ~~-~-rsn~~fDaIvc-DPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w 353 (421)
T KOG2671|consen 277 PP-L-RSNLKFDAIVC-DPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW 353 (421)
T ss_pred cc-h-hhcceeeEEEe-CCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEe
Confidence 43 1 12558999998 5555410 1223455556667889998877
Q ss_pred Eeeccc
Q 028673 181 FSLSMF 186 (205)
Q Consensus 181 ~~~r~~ 186 (205)
.+.+..
T Consensus 354 ~p~~~e 359 (421)
T KOG2671|consen 354 LPTITE 359 (421)
T ss_pred cCchhh
Confidence 664443
No 268
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.06 E-value=0.032 Score=44.20 Aligned_cols=83 Identities=24% Similarity=0.340 Sum_probs=42.3
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHH---HHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKR---NVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~---n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
.+|||.-||.|.=++.+|..|++|++++. |-+..+++. +...+..... ....++++...|-.+.- ...
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~------~~~~ri~l~~~d~~~~L--~~~ 148 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLA------EAMRRIQLIHGDALEYL--RQP 148 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHH------HHHHHEEEEES-CCCHC--CCH
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHH------HHHhCCEEEcCCHHHHH--hhc
Confidence 48999999999999999999999999999 433333332 2222110000 01136777775544322 233
Q ss_pred CCCccEEEEcccccCC
Q 028673 142 APPFDYIIGTDVVYAE 157 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~ 157 (205)
..+||+|.. |+.|..
T Consensus 149 ~~s~DVVY~-DPMFp~ 163 (234)
T PF04445_consen 149 DNSFDVVYF-DPMFPE 163 (234)
T ss_dssp SS--SEEEE---S---
T ss_pred CCCCCEEEE-CCCCCC
Confidence 579999998 777763
No 269
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.034 Score=46.68 Aligned_cols=100 Identities=22% Similarity=0.286 Sum_probs=71.0
Q ss_pred CCeEEEeCCCccHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 65 GKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
..+|+|-=||||+=||..+.- +. +|++-|+ |++++.+++|++.|.. .+..+..-|-... ....
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~------------~~~~v~n~DAN~l--m~~~ 118 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG------------EDAEVINKDANAL--LHEL 118 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc------------ccceeecchHHHH--HHhc
Confidence 678999999999999999975 45 6999999 8999999999999932 2233333221111 1112
Q ss_pred CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
...||+|=. |++ ..+.+++....+..+.+|.+.++..
T Consensus 119 ~~~fd~IDi-DPF---GSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 119 HRAFDVIDI-DPF---GSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCCccEEec-CCC---CCCchHHHHHHHHhhcCCEEEEEec
Confidence 367898743 333 3456788888888888999888854
No 270
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.01 E-value=0.0054 Score=49.95 Aligned_cols=47 Identities=26% Similarity=0.325 Sum_probs=42.4
Q ss_pred CCCeEEEeCCCccHHHH-HHHHhCCE-EEEEcC-cchHHHHHHHHHHhhh
Q 028673 64 KGKRVIELGAGCGVAGF-GMALLGCN-VITTDQ-IEVLPLLKRNVEWNTS 110 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl-~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~ 110 (205)
.+..|.||-+|.|+..+ .+...||+ |++.|. |.+++.+++|++.|+.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V 243 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV 243 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch
Confidence 35689999999999999 78888987 999999 8899999999999965
No 271
>PRK11524 putative methyltransferase; Provisional
Probab=95.87 E-value=0.032 Score=45.59 Aligned_cols=57 Identities=19% Similarity=0.128 Sum_probs=46.2
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHH
Q 028673 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW 107 (205)
Q Consensus 43 ~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~ 107 (205)
+-|.+.+... ...+|..|||--||+|..++++.+.|-+.+++|+ ++.++.+++.+..
T Consensus 195 ~~L~erlI~~--------~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILA--------SSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHH--------hCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 4555555443 2347889999999999999999999999999999 7888988887753
No 272
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.87 E-value=0.03 Score=47.21 Aligned_cols=97 Identities=25% Similarity=0.252 Sum_probs=59.1
Q ss_pred CCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc-
Q 028673 64 KGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 138 (205)
Q Consensus 64 ~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~- 138 (205)
.+.+|+=+|||+ |++++.+++. |+ +|+++|. ++=++.+++-...- ..+...........
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----------------~~~~~~~~~~~~~~~ 231 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----------------VVVNPSEDDAGAEIL 231 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----------------EeecCccccHHHHHH
Confidence 444899999997 9998888876 65 5999999 66677766521110 00100000000000
Q ss_pred cc-CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 139 KA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 139 ~~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.. ....+|+++-+ .-....+..+.++++++|++.+.--
T Consensus 232 ~~t~g~g~D~vie~------~G~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 232 ELTGGRGADVVIEA------VGSPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred HHhCCCCCCEEEEC------CCCHHHHHHHHHHhcCCCEEEEEec
Confidence 01 12368888765 2255678888889999999777644
No 273
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.76 E-value=0.064 Score=39.07 Aligned_cols=86 Identities=17% Similarity=0.078 Sum_probs=51.6
Q ss_pred EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcC-------
Q 028673 88 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL------- 159 (205)
Q Consensus 88 ~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~------- 159 (205)
+|++.|+ +++++.+++.++.++. .+++++..-.=.+...... .+++|.++.| .-|-+..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----------~~~v~li~~sHe~l~~~i~-~~~v~~~iFN-LGYLPggDk~i~T~ 67 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL-----------EDRVTLILDSHENLDEYIP-EGPVDAAIFN-LGYLPGGDKSITTK 67 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------------GSGEEEEES-GGGGGGT---S--EEEEEEE-ESB-CTS-TTSB--
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC-----------CCcEEEEECCHHHHHhhCc-cCCcCEEEEE-CCcCCCCCCCCCcC
Confidence 5899999 8899999999988854 3467776643333322111 1479988876 2243321
Q ss_pred hH---hHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 160 LE---PLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 160 ~~---~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
.+ ..++.+.++|+|||.+.++......
T Consensus 68 ~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 68 PETTLKALEAALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE--STC
T ss_pred cHHHHHHHHHHHHhhccCCEEEEEEeCCCC
Confidence 22 4556666778999998777654443
No 274
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.75 E-value=0.12 Score=43.12 Aligned_cols=95 Identities=21% Similarity=0.232 Sum_probs=54.7
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 63 LKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 63 ~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
.++.+||=.|||. |+.++.+++. |+ +|+++|. ++-++.+++ .+.. .-+.....++. ..
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~-----------~vi~~~~~~~~---~~ 229 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD-----------KLVNPQNDDLD---HY 229 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc-----------EEecCCcccHH---HH
Confidence 3678899899975 7777777764 77 5999998 665555543 2210 00000000111 11
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
....+.+|+|+-+ ...+..+....++++++|++++.-
T Consensus 230 ~~~~g~~D~vid~------~G~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 230 KAEKGYFDVSFEV------SGHPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred hccCCCCCEEEEC------CCCHHHHHHHHHHhhcCCEEEEEc
Confidence 1112358888754 222346667778889999987764
No 275
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.71 E-value=0.01 Score=48.94 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=45.5
Q ss_pred eEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673 67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (205)
Q Consensus 67 ~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~ 144 (205)
+++||-||.|.+++.+.+.|.+ |.++|+ +.+.+..+.|.. .....|..+........ .
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------------------~~~~~Di~~~~~~~l~~-~ 61 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------------------EVICGDITEIDPSDLPK-D 61 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------------------EEEESHGGGCHHHHHHH-T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------------------ccccccccccccccccc-c
Confidence 6899999999999999999987 899999 777777777754 22333333332111112 5
Q ss_pred ccEEEEcccccC
Q 028673 145 FDYIIGTDVVYA 156 (205)
Q Consensus 145 fD~Ii~~d~~y~ 156 (205)
+|+++++.+.-.
T Consensus 62 ~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 62 VDLLIGGPPCQG 73 (335)
T ss_dssp -SEEEEE---TT
T ss_pred ceEEEeccCCce
Confidence 999999977643
No 276
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.55 E-value=0.16 Score=43.47 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=70.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
..+|-||||+.|-.|-=+.++|.+ . ..|++-|. .+-+..++.|+.+.+. .+..+..+|-..+..
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------------~ntiv~n~D~~ef~~ 306 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------------TNTIVSNYDGREFPE 306 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------------CceEEEccCcccccc
Confidence 347889999999987555555543 3 24999999 6678899999988764 334444544433321
Q ss_pred cccCCCCccEEEE----cc--cccCC----------------cChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 138 IKAVAPPFDYIIG----TD--VVYAE----------------HLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 138 ~~~~~~~fD~Ii~----~d--~~y~~----------------~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.. ..++||-|+. |. +++.. +....|+.....++++||.++.+..
T Consensus 307 ~~-~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 307 KE-FPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred cc-cCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 11 2348999963 33 34332 2244677777888999999887754
No 277
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.49 E-value=0.11 Score=42.93 Aligned_cols=117 Identities=19% Similarity=0.238 Sum_probs=65.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcc-hHHHHHHHHHHhhhhh--------------------ccCCC-----
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRI--------------------SQMNP----- 117 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~--------------------~~~~~----- 117 (205)
+..+||-=|||.|.++.-+|..|..+-+-+.+- | ++..++-.|.... .|-.|
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~M--li~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFM--LICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHH--HHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 345899999999999999999999887776643 3 2233333332211 00000
Q ss_pred ---CC--CCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 118 ---GS--DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 118 ---~~--~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.+ ...+......+|+.+........+.||+|+.+--|=-.++.-.-++++.+.|+|||..+=.-|
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGP 297 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGP 297 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccc
Confidence 00 011111122222222221122234799999883332345666788899999999997664433
No 278
>PRK13699 putative methylase; Provisional
Probab=95.43 E-value=0.069 Score=42.26 Aligned_cols=45 Identities=13% Similarity=0.021 Sum_probs=39.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHh
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN 108 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n 108 (205)
+|..|||--||+|..++++.+.|-+.+++|+ ++..+.+.+.++..
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999 77888887776553
No 279
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.42 E-value=0.013 Score=40.47 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=27.3
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCEEEEEcC
Q 028673 65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ 94 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~ 94 (205)
.....|||||.|++--.+.+-|.+-.++|.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 346999999999999999999999999997
No 280
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.28 E-value=0.039 Score=46.09 Aligned_cols=75 Identities=21% Similarity=0.205 Sum_probs=50.7
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
..+++||-||.|-+++.+...|.+ +.++|+ +.+++..+.|.... .+...|...........
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~-----------------~~~~~di~~~~~~~~~~ 65 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHG-----------------DIILGDIKELDGEALRK 65 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCC-----------------ceeechHhhcChhhccc
Confidence 357999999999999999999998 888999 77888777775421 22222222221111111
Q ss_pred CCccEEEEcccccC
Q 028673 143 PPFDYIIGTDVVYA 156 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~ 156 (205)
..+|+|+++.+.-.
T Consensus 66 ~~~DvligGpPCQ~ 79 (328)
T COG0270 66 SDVDVLIGGPPCQD 79 (328)
T ss_pred cCCCEEEeCCCCcc
Confidence 17899999987754
No 281
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.09 E-value=0.33 Score=37.73 Aligned_cols=105 Identities=19% Similarity=0.158 Sum_probs=54.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHh------CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALL------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
+.+.|+|+|.-.|--.+..|.. .++|+++|+ ..... +..++.+ ...++|++.+.+..+.+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~h-----------p~~~rI~~i~Gds~d~~ 98 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESH-----------PMSPRITFIQGDSIDPE 98 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG---------------TTEEEEES-SSSTH
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhc-----------cccCceEEEECCCCCHH
Confidence 6689999999887666655532 247999999 33211 1111111 22468999998777664
Q ss_pred Ccc---cC--CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 137 HIK---AV--APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 137 ~~~---~~--~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
... .. .....+|+- |.=+..++.-.-++....++++|+.+++.+.
T Consensus 99 ~~~~v~~~~~~~~~vlVil-Ds~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 99 IVDQVRELASPPHPVLVIL-DSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp HHHTSGSS----SSEEEEE-SS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred HHHHHHHhhccCCceEEEE-CCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 321 11 223344443 5556666777788889999999998887753
No 282
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.09 E-value=0.034 Score=48.46 Aligned_cols=96 Identities=16% Similarity=0.238 Sum_probs=62.6
Q ss_pred CeEEEeCCCccHHHHHHHHhCC---EEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 66 KRVIELGAGCGVAGFGMALLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
..|+|+.+|.|-++.++....- .|+-++.++.+..+-. -| .--...||.+.... -+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIyd----RG---------------LIG~yhDWCE~fsT--YP 425 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYD----RG---------------LIGVYHDWCEAFST--YP 425 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhh----cc---------------cchhccchhhccCC--CC
Confidence 3699999999966555554432 3444443443332221 12 12346788876533 35
Q ss_pred CCccEEEEcccccC---CcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 143 PPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~---~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.+||+|-++.++-. .-.++.++-.+.++|+|+|.++|-+.
T Consensus 426 RTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 426 RTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred cchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 79999988876633 33567888899999999999998654
No 283
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=95.06 E-value=0.69 Score=39.47 Aligned_cols=136 Identities=14% Similarity=0.119 Sum_probs=85.7
Q ss_pred cCeEEEEEeCCCCcc-ccccccccHH-HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcc
Q 028673 19 LGHQLQFSQDPNSKH-LGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE 96 (205)
Q Consensus 19 ~~~~~~i~q~~~~~~-~g~~~W~~~~-~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~ 96 (205)
..++++++-+|.... .....|+++. .|.+++... ... .+||=++=.-|.++..++..+.. ..+|---
T Consensus 7 ~~~~~~l~r~p~~~~~~~l~awdaade~ll~~~~~~---------~~~-~~~~i~nd~fGal~~~l~~~~~~-~~~ds~~ 75 (378)
T PRK15001 7 GFRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDT---------EIR-GPVLILNDAFGALSCALAEHKPY-SIGDSYI 75 (378)
T ss_pred CCceeEEEECCCCCCcCcccccccHHHHHHHHHhhc---------ccC-CCEEEEcCchhHHHHHHHhCCCC-eeehHHH
Confidence 336788888776444 4488999875 334444332 112 27999999999999999865543 3366533
Q ss_pred hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCc---ChHhHHHHHHHhhCC
Q 028673 97 VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---LLEPLLQTIFALSGP 173 (205)
Q Consensus 97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~---~~~~ll~~~~~~l~~ 173 (205)
.-..++.|++.|+.. .+.++... -. ...+..+|+|+. |.+. ..+..+..+...+.+
T Consensus 76 ~~~~~~~n~~~n~~~----------~~~~~~~~--~~-----~~~~~~~d~vl~----~~PK~~~~l~~~l~~l~~~l~~ 134 (378)
T PRK15001 76 SELATRENLRLNGID----------ESSVKFLD--ST-----ADYPQQPGVVLI----KVPKTLALLEQQLRALRKVVTS 134 (378)
T ss_pred HHHHHHHHHHHcCCC----------cccceeec--cc-----ccccCCCCEEEE----EeCCCHHHHHHHHHHHHhhCCC
Confidence 456788999999652 11122221 11 122456898876 4444 345667777888999
Q ss_pred CcEEEEEEeeccc
Q 028673 174 KTTILVMFSLSMF 186 (205)
Q Consensus 174 ~g~~~i~~~~r~~ 186 (205)
++.++.....+.-
T Consensus 135 ~~~ii~g~~~k~i 147 (378)
T PRK15001 135 DTRIIAGAKARDI 147 (378)
T ss_pred CCEEEEEEecCCC
Confidence 9998766665543
No 284
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=94.73 E-value=0.45 Score=42.04 Aligned_cols=108 Identities=14% Similarity=0.064 Sum_probs=67.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C-----CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALL-G-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~-g-----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
...+|.|--||+|.+-+.+++. + ..+++.|. +....+++.|+-.++... .+.....+--..+
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-----------~~~i~~~dtl~~~ 254 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-----------DANIRHGDTLSNP 254 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-----------cccccccccccCC
Confidence 3458999999998655555432 2 33899998 789999999999987521 1111111100000
Q ss_pred Cc--ccCCCCccEEEEcccccCC-------------------------cChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 137 HI--KAVAPPFDYIIGTDVVYAE-------------------------HLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 137 ~~--~~~~~~fD~Ii~~d~~y~~-------------------------~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.. .....+||+|+++++.... .....++..+...++|+|++-++.+
T Consensus 255 ~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 255 KHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred cccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 00 1134679999999888610 0124677888888999887666654
No 285
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.69 E-value=0.6 Score=39.90 Aligned_cols=24 Identities=4% Similarity=-0.086 Sum_probs=17.4
Q ss_pred hHHHHHHHhhCCCcEEEEEEeecc
Q 028673 162 PLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 162 ~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
.+++.-.+-|.|||+++++...|.
T Consensus 218 ~FL~~Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 218 GFLRARAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHHHHHHHhccCcEEEEEEecCC
Confidence 344444555889999999987774
No 286
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.53 E-value=0.46 Score=39.74 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=52.4
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHHh-CCEEEEEcCc----chHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 63 LKGKRVIELGAGC-GVAGFGMALL-GCNVITTDQI----EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 63 ~~~~~VLdlGcGt-Gl~sl~~a~~-g~~v~~~D~~----~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
..+.+||=+|||. |.+++.+++. |++|++++.. +-++.+ +..+. +. .+..+.+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~----~~~Ga---------------~~--v~~~~~~ 229 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIV----EELGA---------------TY--VNSSKTP 229 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH----HHcCC---------------EE--ecCCccc
Confidence 3678999999975 7777766654 7889999862 222222 22221 11 1111110
Q ss_pred Cc-ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 137 HI-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 137 ~~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
.. ......+|+|+-+ ......+....+.++++|++++.-
T Consensus 230 ~~~~~~~~~~d~vid~------~g~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 230 VAEVKLVGEFDLIIEA------TGVPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred hhhhhhcCCCCEEEEC------cCCHHHHHHHHHHccCCcEEEEEe
Confidence 00 0112468888765 222346677778899999887654
No 287
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.53 E-value=0.55 Score=37.46 Aligned_cols=129 Identities=13% Similarity=0.136 Sum_probs=68.7
Q ss_pred cccccccccc-HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH-hCCE--EEEEcC-cc----hHHHHH
Q 028673 32 KHLGTTVWDA-SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LGCN--VITTDQ-IE----VLPLLK 102 (205)
Q Consensus 32 ~~~g~~~W~~-~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~-~g~~--v~~~D~-~~----~l~~~~ 102 (205)
...-.++|+. ---||.-+.--..+ .....|.+||=||+++|..--..+. .|.+ |++++. +- .+.+++
T Consensus 127 ~kvEyRVWnPfrSKLAA~I~gGvdn----ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk 202 (317)
T KOG1596|consen 127 GKVEYRVWNPFRSKLAAGILGGVDN----IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK 202 (317)
T ss_pred CcEEEEEeChHHHHHHHHhhcCccc----eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh
Confidence 3566778864 22344444322111 2345789999999999965444443 4665 899988 32 223332
Q ss_pred HHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 103 RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 103 ~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
+ ..||.-+.-|...+......-+-.|+|++ |+ -.++...-+.-.....|+++|-++++..
T Consensus 203 k------------------RtNiiPIiEDArhP~KYRmlVgmVDvIFa-Dv-aqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 203 K------------------RTNIIPIIEDARHPAKYRMLVGMVDVIFA-DV-AQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred c------------------cCCceeeeccCCCchheeeeeeeEEEEec-cC-CCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 2 12344444333333322222223444433 21 1233334445556778999999999976
Q ss_pred ec
Q 028673 183 LS 184 (205)
Q Consensus 183 ~r 184 (205)
..
T Consensus 263 an 264 (317)
T KOG1596|consen 263 AN 264 (317)
T ss_pred cc
Confidence 43
No 288
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.51 E-value=0.031 Score=48.50 Aligned_cols=104 Identities=23% Similarity=0.190 Sum_probs=72.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~ 138 (205)
++.+|||-=|+||+-+|..|+. |. +|++-|. +.+++..++|++.|+. .+.++....|..... ..
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v-----------~~ive~~~~DA~~lM~~~ 177 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV-----------EDIVEPHHSDANVLMYEH 177 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc-----------hhhcccccchHHHHHHhc
Confidence 4568999999999999999976 44 4999999 7899999999999954 223333333322211 01
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
......||+|=. |++ .....++....+.+..||.++++..
T Consensus 178 ~~~~~~FDvIDL-DPy---Gs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 178 PMVAKFFDVIDL-DPY---GSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred cccccccceEec-CCC---CCccHHHHHHHHHhhcCCEEEEEec
Confidence 122468998854 333 3445778888888889999888753
No 289
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.46 E-value=0.64 Score=39.02 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=21.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh------------C------CEEEEEcCc
Q 028673 64 KGKRVIELGAGCGVAGFGMALL------------G------CNVITTDQI 95 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~------------g------~~v~~~D~~ 95 (205)
+.-+|+|+||.+|-.++.+... + -+|+..|+|
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP 65 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLP 65 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-T
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC
Confidence 3358999999999888877532 1 269999994
No 290
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=94.42 E-value=0.39 Score=35.94 Aligned_cols=116 Identities=16% Similarity=0.118 Sum_probs=77.1
Q ss_pred cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHH-HHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCC
Q 028673 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGM-ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGS 119 (205)
Q Consensus 41 ~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~-a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (205)
++..|++.+... ...+.+|+=|||=+-...+.- ...+.+++..|++.= .+..
T Consensus 11 T~~~l~~~l~~~---------~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~R-------F~~~----------- 63 (162)
T PF10237_consen 11 TAEFLARELLDG---------ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRR-------FEQF----------- 63 (162)
T ss_pred HHHHHHHHHHHh---------cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecch-------HHhc-----------
Confidence 355677777663 124578999998765554444 112446999998541 1111
Q ss_pred CCCCceEEEEeecCCCCCcc-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 120 DLLGSIQAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 120 ~~~~~i~~~~~dw~~~~~~~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
.++ .+...|...+..++ ...++||+|++-+++...+.......+++.++++++.++++...+..
T Consensus 64 --~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~ 128 (162)
T PF10237_consen 64 --GGD-EFVFYDYNEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEME 128 (162)
T ss_pred --CCc-ceEECCCCChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHHH
Confidence 112 45566666665443 22569999999777776777788889999999999999988776554
No 291
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.33 E-value=0.048 Score=45.30 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=32.7
Q ss_pred EEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHH
Q 028673 68 VIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV 105 (205)
Q Consensus 68 VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~ 105 (205)
|+||.||.|-+++.+.+.|.+ +.++|+ +.+++..+.|.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC
Confidence 689999999999999999998 678999 66778777765
No 292
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.28 E-value=0.17 Score=44.10 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=65.2
Q ss_pred eEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHH-HHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673 67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLK-RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (205)
Q Consensus 67 ~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~-~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~ 143 (205)
++|.+|||.--++..+-+-|.+ |+.+|+ +-+++.+. .|++.+ ..+.+...+... ....++
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~--------------~~~~~~~~d~~~---l~fedE 113 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER--------------PEMQMVEMDMDQ---LVFEDE 113 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC--------------cceEEEEecchh---ccCCCc
Confidence 8999999999888888888987 999999 44555443 443222 234555543332 234467
Q ss_pred CccEEEEcccccC----------CcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 144 PFDYIIGTDVVYA----------EHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 144 ~fD~Ii~~d~~y~----------~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
+||+|+.-..+-+ .......+..+.+.++++|+.+...
T Consensus 114 SFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 114 SFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred ceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 8999876554432 2234466788889999999855443
No 293
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.12 E-value=0.32 Score=39.99 Aligned_cols=84 Identities=11% Similarity=-0.006 Sum_probs=51.1
Q ss_pred CCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 64 KGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 64 ~~~~VLdlGcGt-Gl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
++++||=+|||. |++++.+|+. |++ |+++|. ++-++.+... .. ++. .+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~--------------i~~-----~~~---- 196 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV--------------LDP-----EKD---- 196 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc--------------cCh-----hhc----
Confidence 567888889985 8887777764 887 777787 4443333221 00 000 000
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
....+|+|+-+ .-.+..+....++++++|++++.-
T Consensus 197 -~~~g~Dvvid~------~G~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 197 -PRRDYRAIYDA------SGDPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred -cCCCCCEEEEC------CCCHHHHHHHHHhhhcCcEEEEEe
Confidence 12357877754 233456677778899999988654
No 294
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=94.01 E-value=0.27 Score=40.67 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=37.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHH
Q 028673 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW 107 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~ 107 (205)
.++..++|.=+|.|--+..+++. ..+|+++|. +++++.+++.++.
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 35678999999999999988875 367999999 8899999887754
No 295
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=93.85 E-value=0.052 Score=44.02 Aligned_cols=96 Identities=19% Similarity=0.159 Sum_probs=59.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
.+..++|.|||.|-....- -..-+++.|+ ...+..+++ .+. + .... .+.-..+...
T Consensus 45 ~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~---~~~-------------~--~~~~---ad~l~~p~~~ 101 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKR---SGG-------------D--NVCR---ADALKLPFRE 101 (293)
T ss_pred CcceeeecccCCcccCcCC--Ccceeeecchhhhhcccccc---CCC-------------c--eeeh---hhhhcCCCCC
Confidence 4778999999998322110 1224788888 444444332 110 0 1111 1111223346
Q ss_pred CCccEEEEcccccCCcC---hHhHHHHHHHhhCCCcEEEEEEe
Q 028673 143 PPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.+||.+++..+++|... -..+++.+.+.++|||..++-.-
T Consensus 102 ~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 102 ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 78999999999998544 44788888889999999776644
No 296
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.82 E-value=0.28 Score=39.19 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=56.9
Q ss_pred CCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
..+|+|||||.=-+++..... ++.+++.|+ ..+++.+..-+..-+. ...+...|.-.. ..
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-------------~~~~~v~Dl~~~----~~ 168 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-------------PHDARVRDLLSD----PP 168 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--------------CEEEEEE-TTTS----HT
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-------------CcceeEeeeecc----CC
Confidence 468999999987666655544 468999999 7788888877665532 345555443322 13
Q ss_pred CCCccEEEEcccccCCcCh--HhHHHHHHHhhCCCcEEEEEEeeccchh
Q 028673 142 APPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILVMFSLSMFSL 188 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~~--~~ll~~~~~~l~~~g~~~i~~~~r~~~~ 188 (205)
....|+.+.-=++.-.+.. ...++.+..+ ..-.+++++|.|.-..
T Consensus 169 ~~~~DlaLllK~lp~le~q~~g~g~~ll~~~--~~~~~vVSfPtrSL~g 215 (251)
T PF07091_consen 169 KEPADLALLLKTLPCLERQRRGAGLELLDAL--RSPHVVVSFPTRSLGG 215 (251)
T ss_dssp TSEESEEEEET-HHHHHHHSTTHHHHHHHHS--CESEEEEEEES-----
T ss_pred CCCcchhhHHHHHHHHHHHhcchHHHHHHHh--CCCeEEEecccccccc
Confidence 4568888876333211111 1112222222 3456888998776543
No 297
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.81 E-value=0.28 Score=36.19 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=36.6
Q ss_pred CeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhh
Q 028673 66 KRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTS 110 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~ 110 (205)
.+.+|||+|-|.+-+.+++.|.. -+++++ |-.+...+..+-+.+.
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~ 120 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC 120 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc
Confidence 47999999999999999999965 899999 6577777766655554
No 298
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=93.62 E-value=1.4 Score=35.27 Aligned_cols=130 Identities=9% Similarity=0.075 Sum_probs=87.1
Q ss_pred cccc---cHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhh
Q 028673 37 TVWD---ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRI 112 (205)
Q Consensus 37 ~~W~---~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (205)
++|. ....|..|+..-. ....+.+ |..=||+=.++-.+.+..-++.++++ |+=...++.|+...
T Consensus 66 RL~~a~~lpa~l~~yl~~i~-------~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d---- 133 (279)
T COG2961 66 RLWQAADLPAELEPYLDAVR-------QLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGD---- 133 (279)
T ss_pred HHHhcCCchHHHHHHHHHHH-------HhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCC----
Confidence 4663 3456677775531 1222333 88888888877777777788999999 87667777777633
Q ss_pred ccCCCCCCCCCceEEEEee-cCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhC--CCcEEEEEEeeccchh
Q 028673 113 SQMNPGSDLLGSIQAVELD-WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSG--PKTTILVMFSLSMFSL 188 (205)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~d-w~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~--~~g~~~i~~~~r~~~~ 188 (205)
.++.+...| |...-....+.++=-+|+.-+++-....++.+++++.+.++ ++|+..|=|+......
T Consensus 134 ----------~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~ 202 (279)
T COG2961 134 ----------RRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQ 202 (279)
T ss_pred ----------cceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHH
Confidence 356776644 22221122223455788886666668889999999998876 7888888888666654
No 299
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.62 E-value=0.99 Score=40.05 Aligned_cols=99 Identities=26% Similarity=0.308 Sum_probs=59.0
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC----
Q 028673 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN---- 134 (205)
Q Consensus 62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~---- 134 (205)
..++.+|+=+|||. |+.++.+++ +|++|+++|. ++.++.++. .+. ++...+..+
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~----lGa---------------~~v~v~~~e~g~~ 221 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS----MGA---------------EFLELDFKEEGGS 221 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC---------------eEEeccccccccc
Confidence 34568999999996 888777665 4899999999 555454443 121 111111100
Q ss_pred ----------CCC------cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673 135 ----------EDH------IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV 179 (205)
Q Consensus 135 ----------~~~------~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i 179 (205)
... +...-..+|+|+.+-.+--.....-+.+...+.+|||+.++=
T Consensus 222 ~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 222 GDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred cccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 000 111135699998875454433433466777788888887663
No 300
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.43 E-value=0.32 Score=41.34 Aligned_cols=120 Identities=14% Similarity=0.118 Sum_probs=69.6
Q ss_pred CCCCCeEEEeCCCccHHHHHHH-HhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMA-LLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a-~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
.-++....|||+|.|-+-.+.| ..+++ -+++++ ...-+.+..|...+.....-.+ .....+..+..++.+....
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fG---k~~~~~~~i~gsf~~~~~v 266 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFG---KKPNKIETIHGSFLDPKRV 266 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhC---CCcCceeecccccCCHHHH
Confidence 3356789999999985555544 44443 555555 3333344433333211000000 0123456666555554433
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeecc
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSM 185 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~ 185 (205)
......-++|+.+.+-|.++..-.+- .+..-+++|.+++=.-+.+.
T Consensus 267 ~eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 267 TEIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HHHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCcceEeccccccc
Confidence 34456789999999998877666555 66666788888887766544
No 301
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.36 E-value=0.23 Score=42.21 Aligned_cols=42 Identities=31% Similarity=0.374 Sum_probs=31.6
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHH
Q 028673 62 KLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKR 103 (205)
Q Consensus 62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~ 103 (205)
..++.+||.+|||+ |...+.+|+. |. +|+++|. ++.++.+++
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS 227 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 34678999999987 8777777765 66 5999998 666666654
No 302
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.07 E-value=0.78 Score=38.27 Aligned_cols=90 Identities=16% Similarity=0.030 Sum_probs=52.6
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHHh--C-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 63 LKGKRVIELGAGC-GVAGFGMALL--G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 63 ~~~~~VLdlGcGt-Gl~sl~~a~~--g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
..|.+||=+|||. |++.+.++++ | ++|+++|. ++-++.++. .+. ... .-++.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--------------~~~-~~~~~---- 218 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--------------TYL-IDDIP---- 218 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--------------eee-hhhhh----
Confidence 3578999999985 8777666653 4 46999998 554455442 110 000 00111
Q ss_pred cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
....+|+|+-+ .-. ...+..+....++++++|++++.-
T Consensus 219 ---~~~g~d~viD~--~G~-~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 219 ---EDLAVDHAFEC--VGG-RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ---hccCCcEEEEC--CCC-CccHHHHHHHHHhCcCCcEEEEEe
Confidence 01247887743 211 113456777778899999987654
No 303
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.06 E-value=1.7 Score=33.72 Aligned_cols=77 Identities=26% Similarity=0.347 Sum_probs=44.8
Q ss_pred CCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 64 KGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
++++||=.|++.|+ |..++ +.|++|++++. ++-.+.+...+... .++.....|+.+.+..
T Consensus 4 ~~~~vlItGa~g~i-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~~~ 68 (238)
T PRK05786 4 KGKKVAIIGVSEGL-GYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--------------GNIHYVVGDVSSTESA 68 (238)
T ss_pred CCcEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCeEEEECCCCCHHHH
Confidence 57899999996543 44443 45889999998 54444333322221 2466777777765432
Q ss_pred cc-------CCCCccEEEEccccc
Q 028673 139 KA-------VAPPFDYIIGTDVVY 155 (205)
Q Consensus 139 ~~-------~~~~fD~Ii~~d~~y 155 (205)
.. .-+++|.++.+--.+
T Consensus 69 ~~~~~~~~~~~~~id~ii~~ag~~ 92 (238)
T PRK05786 69 RNVIEKAAKVLNAIDGLVVTVGGY 92 (238)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCc
Confidence 11 123578777665433
No 304
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.03 E-value=0.57 Score=38.66 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=57.0
Q ss_pred CeEEEeCCCc--cHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 66 KRVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 66 ~~VLdlGcGt--Gl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
.+|+=+|||. |+++..+++.|.+|++++. ++-++.+++ .++..+... ............ ....
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~---~~Gl~i~~~-------g~~~~~~~~~~~----~~~~ 68 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ---AGGLTLVEQ-------GQASLYAIPAET----ADAA 68 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh---cCCeEEeeC-------CcceeeccCCCC----cccc
Confidence 4689999996 5778888888999999998 444444443 222211000 000110100011 1123
Q ss_pred CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
++||+|+.+ -.....+..++.+..++.+++.++..
T Consensus 69 ~~~D~viv~---vK~~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 69 EPIHRLLLA---CKAYDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred cccCEEEEE---CCHHhHHHHHHHHHhhCCCCCEEEEE
Confidence 589999876 22234567788888888888865554
No 305
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=92.87 E-value=2.9 Score=32.73 Aligned_cols=112 Identities=15% Similarity=0.205 Sum_probs=61.2
Q ss_pred CCeEEEeCCCcc----HHHHHHHHh--CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC-C
Q 028673 65 GKRVIELGAGCG----VAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D 136 (205)
Q Consensus 65 ~~~VLdlGcGtG----l~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~-~ 136 (205)
-+.++|..|+-| .+++++|.+ |.+++.+-- ++.+...++.+...+. .+.+++.. ++. +
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~-----------~~~vEfvv---g~~~e 107 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL-----------SDVVEFVV---GEAPE 107 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc-----------cccceEEe---cCCHH
Confidence 467999976533 334444433 677555544 4445555555544432 23346554 432 2
Q ss_pred CcccCCCCccEEEEcccccCCcChH-hHHHHHHHhhCCCcEEEEEEeeccchhHHHHHHh
Q 028673 137 HIKAVAPPFDYIIGTDVVYAEHLLE-PLLQTIFALSGPKTTILVMFSLSMFSLTFFCWTR 195 (205)
Q Consensus 137 ~~~~~~~~fD~Ii~~d~~y~~~~~~-~ll~~~~~~l~~~g~~~i~~~~r~~~~~~~~~~~ 195 (205)
.....-...|+++. ||= .+++. .+++.+. ++|.|.++++++.......-|.|..
T Consensus 108 ~~~~~~~~iDF~vV-Dc~--~~d~~~~vl~~~~--~~~~GaVVV~~Na~~r~~~~~~w~~ 162 (218)
T PF07279_consen 108 EVMPGLKGIDFVVV-DCK--REDFAARVLRAAK--LSPRGAVVVCYNAFSRSTNGFSWRS 162 (218)
T ss_pred HHHhhccCCCEEEE-eCC--chhHHHHHHHHhc--cCCCceEEEEeccccCCcCCccHHH
Confidence 12222346888877 332 34444 6666543 6678999999886655444566755
No 306
>PRK10458 DNA cytosine methylase; Provisional
Probab=92.78 E-value=0.34 Score=42.50 Aligned_cols=41 Identities=29% Similarity=0.319 Sum_probs=34.4
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCE-EEEEcC-cchHHHHHHHH
Q 028673 65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV 105 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~ 105 (205)
.-+++||-||.|-+++.+-..|.+ |.++|+ +.+.+..+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 458999999999999988888988 788899 66777777764
No 307
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.73 E-value=0.38 Score=34.34 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=29.8
Q ss_pred HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCc-cHHHHHHHHhCCEEEEEcC-cc
Q 028673 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC-GVAGFGMALLGCNVITTDQ-IE 96 (205)
Q Consensus 44 ~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGt-Gl~sl~~a~~g~~v~~~D~-~~ 96 (205)
-+|+|+.+.. ...+|+|+|-|. --.+..++..|..|++||+ +.
T Consensus 3 ~~a~~ia~~~----------~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~ 47 (127)
T PF03686_consen 3 DFAEYIARLN----------NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR 47 (127)
T ss_dssp HHHHHHHHHS-----------SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S
T ss_pred hHHHHHHHhC----------CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc
Confidence 4788887642 234999999996 4678888889999999999 54
No 308
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=92.69 E-value=0.24 Score=38.73 Aligned_cols=121 Identities=16% Similarity=0.122 Sum_probs=62.1
Q ss_pred CeEEEeCCCccHHHHHHHHh-CC---EEEEEcC-cchHHHHHHHHHHhh---hhh----------ccCCCC---------
Q 028673 66 KRVIELGAGCGVAGFGMALL-GC---NVITTDQ-IEVLPLLKRNVEWNT---SRI----------SQMNPG--------- 118 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~-g~---~v~~~D~-~~~l~~~~~n~~~n~---~~~----------~~~~~~--------- 118 (205)
-++-|=.||.|.+--.+..+ +. +|+++|+ +++++.+++|+..-. +.. ....|+
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~ 132 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESAD 132 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 47999999999665555433 32 5999999 789999999986421 100 000000
Q ss_pred --------CCCCCceEEEEeecCCCCCc--ccCCCCccEEEEcccccCC-c---------ChHhHHHHHHHhhCCCcEEE
Q 028673 119 --------SDLLGSIQAVELDWGNEDHI--KAVAPPFDYIIGTDVVYAE-H---------LLEPLLQTIFALSGPKTTIL 178 (205)
Q Consensus 119 --------~~~~~~i~~~~~dw~~~~~~--~~~~~~fD~Ii~~d~~y~~-~---------~~~~ll~~~~~~l~~~g~~~ 178 (205)
........+...|..+.... .......|+|+. |+-|-. . ....++..+...|.+++++.
T Consensus 133 RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViT-DlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~ 211 (246)
T PF11599_consen 133 RLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVIT-DLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVA 211 (246)
T ss_dssp HHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEE-E--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEE
T ss_pred HHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEe-cCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEE
Confidence 01122245555444433211 112334687766 777762 1 24478999999996666666
Q ss_pred EEEeeccch
Q 028673 179 VMFSLSMFS 187 (205)
Q Consensus 179 i~~~~r~~~ 187 (205)
++...|...
T Consensus 212 v~~k~~Ki~ 220 (246)
T PF11599_consen 212 VSDKGRKIP 220 (246)
T ss_dssp EEESSSS--
T ss_pred EecCCcccc
Confidence 655544433
No 309
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=92.59 E-value=0.51 Score=38.14 Aligned_cols=110 Identities=19% Similarity=0.229 Sum_probs=68.2
Q ss_pred CeEEEeCCCccHHHHHHHHh-CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC--Ccc---
Q 028673 66 KRVIELGAGCGVAGFGMALL-GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED--HIK--- 139 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~--~~~--- 139 (205)
..|+.||||.=.-+..+... +.+++=+|.|++++.-++-+..++. ....+......|..+.. .+.
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~---------~~~~~~~~v~~Dl~~~w~~~L~~~g 153 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGA---------EPPAHRRAVPVDLRQDWPAALAAAG 153 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCC---------CCCCceEEeccCchhhHHHHHHhCC
Confidence 36999999965444444322 4567777888888877777765532 11244556665544110 011
Q ss_pred cCCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 140 AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
......-++++-.++++ .+....+++.+.....||+.+++-+...
T Consensus 154 fd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 154 FDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred CCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 11234456777777755 4567789999999888999988876544
No 310
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.53 E-value=1.4 Score=35.55 Aligned_cols=94 Identities=17% Similarity=0.143 Sum_probs=52.4
Q ss_pred CCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeec-CCCCCc
Q 028673 64 KGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW-GNEDHI 138 (205)
Q Consensus 64 ~~~~VLdlGcGt-Gl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw-~~~~~~ 138 (205)
++.+||=.|+|. |++.+.+|+. |++ |+++|. ++-++.+++ .+.. ..+...+. ......
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~-------------~~i~~~~~~~~~~~~ 182 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT-------------ALAEPEVLAERQGGL 182 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc-------------EecCchhhHHHHHHH
Confidence 678999999875 7776666654 776 889987 544444433 1110 00000000 000000
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
. ....+|+|+-+ .--...++...++++++|++++.-
T Consensus 183 ~-~~~g~d~vid~------~G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 183 Q-NGRGVDVALEF------SGATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred h-CCCCCCEEEEC------CCChHHHHHHHHHhcCCCEEEEec
Confidence 0 12358887754 222456667778889999987655
No 311
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.45 E-value=0.48 Score=39.71 Aligned_cols=98 Identities=18% Similarity=0.153 Sum_probs=52.4
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 63 LKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 63 ~~~~~VLdlGcGt-Gl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
..+.+||=.|||. |...+.+|+. |++ |+++|. ++-.+.+++ .+.. .-+.....+|.+.-..
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~-----------~~i~~~~~~~~~~i~~ 239 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT-----------HTVNSSGTDPVEAIRA 239 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc-----------eEEcCCCcCHHHHHHH
Confidence 4578999999874 7777766764 775 999988 554444432 2210 0011111111100000
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
......+|+|+-+ .-. +..+......++++|++++.-
T Consensus 240 ~~~~~g~d~vid~--~g~----~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 240 LTGGFGADVVIDA--VGR----PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred HhCCCCCCEEEEC--CCC----HHHHHHHHHHhccCCEEEEEC
Confidence 0112358888743 322 334555667889999987654
No 312
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.38 E-value=1.3 Score=36.38 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=58.7
Q ss_pred CCCCCCCeEEEeCCCcc---HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673 60 PSKLKGKRVIELGAGCG---VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (205)
Q Consensus 60 ~~~~~~~~VLdlGcGtG---l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~ 135 (205)
..++.|+.||==|.|.| .+++.+|++|++++..|+ ++..+...+.++.+| ++.....|..+.
T Consensus 33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g--------------~~~~y~cdis~~ 98 (300)
T KOG1201|consen 33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG--------------EAKAYTCDISDR 98 (300)
T ss_pred hhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC--------------ceeEEEecCCCH
Confidence 45778999999999998 567778899999999999 666666666666553 466777777776
Q ss_pred CCc-------ccCCCCccEEEEcccc
Q 028673 136 DHI-------KAVAPPFDYIIGTDVV 154 (205)
Q Consensus 136 ~~~-------~~~~~~fD~Ii~~d~~ 154 (205)
++. ...-+..|+++-|--+
T Consensus 99 eei~~~a~~Vk~e~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 99 EEIYRLAKKVKKEVGDVDILVNNAGI 124 (300)
T ss_pred HHHHHHHHHHHHhcCCceEEEecccc
Confidence 543 1234678888876443
No 313
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=91.67 E-value=2.4 Score=35.88 Aligned_cols=109 Identities=16% Similarity=0.096 Sum_probs=59.6
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC------EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecC
Q 028673 61 SKLKGKRVIELGAGCGVAGFGMALLGC------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 133 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl~sl~~a~~g~------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~ 133 (205)
+.-+|.+|||+.+-.|-=++.+....+ .|++-|. +.=+..+..-++.-. ..++.+...+..
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~------------~~~~~v~~~~~~ 219 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP------------SPNLLVTNHDAS 219 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC------------Ccceeeecccce
Confidence 444688999999999966655554322 6999998 443444443332210 112222222211
Q ss_pred CCCCc------ccCCCCccEEEEcccccCCc------------------------ChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 134 NEDHI------KAVAPPFDYIIGTDVVYAEH------------------------LLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 134 ~~~~~------~~~~~~fD~Ii~~d~~y~~~------------------------~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
..... ......||-|++ |+....+ .--.++..-.++|++||+++.+..
T Consensus 220 ~~p~~~~~~~~~~~~~~fDrVLv-DVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 220 LFPNIYLKDGNDKEQLKFDRVLV-DVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred eccccccccCchhhhhhcceeEE-ecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 11111 112347898876 4332210 011466677788999999988864
No 314
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.65 E-value=1.8 Score=35.95 Aligned_cols=89 Identities=17% Similarity=0.031 Sum_probs=52.4
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
...|.+||=.|+|. |...+.+|+ .|++|++++. ++-.+.+++ .+.. .+... .+.
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~--------------~vi~~--~~~--- 219 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAA--------------SAGGA--YDT--- 219 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCc--------------eeccc--ccc---
Confidence 34578999999864 655565665 4888999987 554444433 2220 11110 011
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
....+|+++..+.. ...+....+.++++|++++.-
T Consensus 220 --~~~~~d~~i~~~~~------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 220 --PPEPLDAAILFAPA------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred --CcccceEEEECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence 12357877654432 246777778899999987654
No 315
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.44 E-value=0.83 Score=39.07 Aligned_cols=74 Identities=23% Similarity=0.377 Sum_probs=48.2
Q ss_pred CeEEEeCCCc-cHHHH-HHHHhC-CEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 66 KRVIELGAGC-GVAGF-GMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 66 ~~VLdlGcGt-Gl~sl-~~a~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
++||=||||. |.... .+|+.+ .+|+..|. .+.++.+..+.. .+++...+|..+.+.+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----------------~~v~~~~vD~~d~~al~~l 65 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----------------GKVEALQVDAADVDALVAL 65 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----------------ccceeEEecccChHHHHHH
Confidence 5799999974 53333 335556 57999998 564444433211 2578888888887655444
Q ss_pred CCCccEEEEccccc
Q 028673 142 APPFDYIIGTDVVY 155 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y 155 (205)
-..+|+||..-+.|
T Consensus 66 i~~~d~VIn~~p~~ 79 (389)
T COG1748 66 IKDFDLVINAAPPF 79 (389)
T ss_pred HhcCCEEEEeCCch
Confidence 55679998875444
No 316
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.29 E-value=0.53 Score=38.67 Aligned_cols=96 Identities=23% Similarity=0.316 Sum_probs=53.1
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 63 ~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
..+.+||..|+|. |...+.+|+ .|.+|++++. ++..+.+++ .+.. ..+......+...- ..
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~-----------~~~~~~~~~~~~~~-~~ 227 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD-----------EVLNSLDDSPKDKK-AA 227 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC-----------EEEcCCCcCHHHHH-HH
Confidence 3567888888863 666666665 4888999987 555444432 2210 00000000000000 01
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
.....+|+++.+ . .....++.+.+.++++|+++..
T Consensus 228 ~~~~~~D~vid~--~----g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 228 GLGGGFDVIFDF--V----GTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred hcCCCceEEEEC--C----CCHHHHHHHHHHhhcCCEEEEE
Confidence 123468988754 1 1245677778899999998765
No 317
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.29 E-value=1.5 Score=35.92 Aligned_cols=32 Identities=34% Similarity=0.545 Sum_probs=22.2
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCE-EEEEcC
Q 028673 62 KLKGKRVIELGAGCGVA---GFGMALLGCN-VITTDQ 94 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~---sl~~a~~g~~-v~~~D~ 94 (205)
..+++++|=+|+| |.. ...++..|++ |+.++.
T Consensus 123 ~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R 158 (289)
T PRK12548 123 DVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNI 158 (289)
T ss_pred CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeC
Confidence 3568899999997 532 2223456875 999987
No 318
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.23 E-value=0.42 Score=33.62 Aligned_cols=85 Identities=27% Similarity=0.325 Sum_probs=53.8
Q ss_pred CccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC---ccc--CCCCcc
Q 028673 74 GCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH---IKA--VAPPFD 146 (205)
Q Consensus 74 GtGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~---~~~--~~~~fD 146 (205)
|.|+.++.+|+. |++|+++|. ++-++.+++ .+. -. ..+..+.+. ... ....+|
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga--------------~~--~~~~~~~~~~~~i~~~~~~~~~d 60 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGA--------------DH--VIDYSDDDFVEQIRELTGGRGVD 60 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTE--------------SE--EEETTTSSHHHHHHHHTTTSSEE
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hcc--------------cc--cccccccccccccccccccccce
Confidence 568888888865 888999999 555555543 322 11 223333211 111 124799
Q ss_pred EEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 147 ~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
+|+-+ ......++...++++++|++.+.--..
T Consensus 61 ~vid~------~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 61 VVIDC------VGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp EEEES------SSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred EEEEe------cCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 88876 233678888889999999988875443
No 319
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.98 E-value=1.7 Score=34.15 Aligned_cols=94 Identities=30% Similarity=0.300 Sum_probs=53.1
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc-
Q 028673 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 138 (205)
Q Consensus 63 ~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~- 138 (205)
.++.+||-.|+|+ |...+.+++ .|.+|++++. ++..+.++. .+. -.+ .+.......
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~--------------~~~--~~~~~~~~~~ 192 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE----LGA--------------DHV--IDYKEEDLEE 192 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----hCC--------------cee--ccCCcCCHHH
Confidence 4678999999986 555554554 4788999988 544444432 111 000 111111100
Q ss_pred ---ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 139 ---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 139 ---~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
......+|+++.+ .- .......+.+.++++|+++....
T Consensus 193 ~~~~~~~~~~d~vi~~--~~----~~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 193 ELRLTGGGGADVVIDA--VG----GPETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred HHHHhcCCCCCEEEEC--CC----CHHHHHHHHHhcccCCEEEEEcc
Confidence 0123579999865 11 11456667778889999876643
No 320
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.69 E-value=2 Score=35.48 Aligned_cols=39 Identities=36% Similarity=0.460 Sum_probs=26.9
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEEcC-cchHHHH
Q 028673 63 LKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLL 101 (205)
Q Consensus 63 ~~~~~VLdlGcGt-Gl~sl~~a~-~g~~-v~~~D~-~~~l~~~ 101 (205)
.++.+||=+|+|. |...+.+++ .|++ |+++|. ++-.+.+
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~ 204 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELA 204 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 4578888899864 666665665 4887 999987 5544444
No 321
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=90.66 E-value=0.82 Score=34.19 Aligned_cols=102 Identities=11% Similarity=0.083 Sum_probs=57.3
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCE-EEEEcCcc--hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccC
Q 028673 65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQIE--VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~~g~~-v~~~D~~~--~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
|++++=+|+..=.+=..+.+.|+. |+.+|+.. .-+..+..+..- ..+++ .-+|.. -
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi--------------~p~df-~~~~~~------y 60 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSI--------------LPVDF-AKNWQK------Y 60 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccccc--------------cHHHH-HHHHHH------h
Confidence 577888888866666666677775 88888732 111111100000 00000 001211 1
Q ss_pred CCCccEEEEcccccCCc-----------ChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673 142 APPFDYIIGTDVVYAEH-----------LLEPLLQTIFALSGPKTTILVMFSLSMFS 187 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~-----------~~~~ll~~~~~~l~~~g~~~i~~~~r~~~ 187 (205)
..+||.+.+-..+-+.. .....+..+.++||+||.++++.|.....
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~ 117 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDA 117 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcc
Confidence 35688877766664421 22356777888999999999998865433
No 322
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=90.60 E-value=0.6 Score=39.66 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=27.0
Q ss_pred CeEEEeCCCccHHHHHHHH-hCCEEEEEcCcc
Q 028673 66 KRVIELGAGCGVAGFGMAL-LGCNVITTDQIE 96 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~-~g~~v~~~D~~~ 96 (205)
+.|+|+|+|.|.++-+++- .|..|.++|.+.
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq 186 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ 186 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence 5799999999999999985 577899999854
No 323
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=90.60 E-value=1.9 Score=36.28 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=23.9
Q ss_pred CCCeEEEeCCCc-cHHHHHHHHh-CCEEEEEcC
Q 028673 64 KGKRVIELGAGC-GVAGFGMALL-GCNVITTDQ 94 (205)
Q Consensus 64 ~~~~VLdlGcGt-Gl~sl~~a~~-g~~v~~~D~ 94 (205)
.+.+||=.|||. |+..+.+|+. |++|++++.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~ 215 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISS 215 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 577888899975 7777777754 888888876
No 324
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.45 E-value=0.59 Score=37.01 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=28.3
Q ss_pred CCCC-CeEEEeCCCccHHHHHHHHh--------CCE---EEEEcCcch
Q 028673 62 KLKG-KRVIELGAGCGVAGFGMALL--------GCN---VITTDQIEV 97 (205)
Q Consensus 62 ~~~~-~~VLdlGcGtGl~sl~~a~~--------g~~---v~~~D~~~~ 97 (205)
.++| ++|+||.+-.|..|..++++ +.+ ++++|+..|
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M 85 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM 85 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC
Confidence 4455 58999999999999999975 222 999998554
No 325
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=90.43 E-value=0.51 Score=37.62 Aligned_cols=48 Identities=25% Similarity=0.310 Sum_probs=31.7
Q ss_pred HHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHH
Q 028673 45 FVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLP 99 (205)
Q Consensus 45 La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~ 99 (205)
|+.++.... |.. +..+++|.-||+|.+++.+...+.+|+.-|+ +..+.
T Consensus 8 l~~~I~~~i------p~~-~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~ 56 (260)
T PF02086_consen 8 LAKWIIELI------PKN-KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLIN 56 (260)
T ss_dssp GHHHHHHHS-------S--S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHH
T ss_pred HHHHHHHHc------CCC-CCCEEEEEecchhHHHHHhcccccceeeeechHHHHH
Confidence 556666542 222 5789999999999999988888889999999 54433
No 326
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.32 E-value=0.6 Score=39.39 Aligned_cols=96 Identities=19% Similarity=0.254 Sum_probs=51.8
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 63 LKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 63 ~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
..+.+||=.|+|. |.+.+.+|+. |+ +|+++|. ++-++.+++ .+.. .-+.....++.+ ..
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~-----------~~i~~~~~~~~~--~i 252 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT-----------ATVNAGDPNAVE--QV 252 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc-----------eEeCCCchhHHH--HH
Confidence 3577888899874 6666666654 87 5999998 554454432 2210 000100101100 00
Q ss_pred c-cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 139 K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 139 ~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
. .....+|+|+-+ . .....+....++++++|++++.-
T Consensus 253 ~~~~~~g~d~vid~--~----G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 253 RELTGGGVDYAFEM--A----GSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred HHHhCCCCCEEEEC--C----CChHHHHHHHHHHhcCCEEEEEc
Confidence 0 112258888754 1 12345666677888999877653
No 327
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.17 E-value=0.85 Score=34.64 Aligned_cols=103 Identities=21% Similarity=0.256 Sum_probs=52.8
Q ss_pred eEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCC-----CCCCceEEEEeecCCCCCc
Q 028673 67 RVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS-----DLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 67 ~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~-----~~~~~i~~~~~dw~~~~~~ 138 (205)
+|.=+|+|+ | -++..++..|.+|+..|. ++.++.+++.+..+.........-+ ....++.+.. + +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~----d---l 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTT----D---L 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEES----S---G
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccccc----C---H
Confidence 356688886 5 456666778999999999 7788877777765322110000000 0011233211 1 1
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEE
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 178 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~ 178 (205)
.... ..|+|+-+ +.-..+.-..+++.+.+++.|+..+.
T Consensus 74 ~~~~-~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ila 111 (180)
T PF02737_consen 74 EEAV-DADLVIEA-IPEDLELKQELFAELDEICPPDTILA 111 (180)
T ss_dssp GGGC-TESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEE
T ss_pred HHHh-hhheehhh-ccccHHHHHHHHHHHHHHhCCCceEE
Confidence 1122 56777765 11222334477888888877776543
No 328
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=90.08 E-value=4.3 Score=33.63 Aligned_cols=98 Identities=27% Similarity=0.333 Sum_probs=59.1
Q ss_pred eEEEeCCCc--cHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673 67 RVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (205)
Q Consensus 67 ~VLdlGcGt--Gl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~ 144 (205)
+|+=+|||. ++++..+++.|..|+.+-.++.++..+++ ++.+... ..+....... ........+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~----GL~i~~~------~~~~~~~~~~----~~~~~~~~~ 67 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKK----GLRIEDE------GGNFTTPVVA----ATDAEALGP 67 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhC----CeEEecC------CCcccccccc----ccChhhcCC
Confidence 678899996 58888899999667777665434444443 4322110 0000111100 001122348
Q ss_pred ccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 145 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 145 fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
+|+|+.+ -.....+..++.+...+++.+.+++..
T Consensus 68 ~Dlviv~---vKa~q~~~al~~l~~~~~~~t~vl~lq 101 (307)
T COG1893 68 ADLVIVT---VKAYQLEEALPSLAPLLGPNTVVLFLQ 101 (307)
T ss_pred CCEEEEE---eccccHHHHHHHhhhcCCCCcEEEEEe
Confidence 9999887 445578899999999999888765543
No 329
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=89.51 E-value=8.8 Score=30.14 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=49.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673 61 SKLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~ 135 (205)
..++++++|=.|++.|+ |..+ ++.|++|++++. ++.++.+...++..+ .++.+...|..+.
T Consensus 7 ~~~~~k~ilItGas~~I-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~ 72 (256)
T PRK06124 7 FSLAGQVALVTGSARGL-GFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG-------------GAAEALAFDIADE 72 (256)
T ss_pred cCCCCCEEEEECCCchH-HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEccCCCH
Confidence 34578999999976554 4433 345899999998 555554444444332 2467777777765
Q ss_pred CCcc-------cCCCCccEEEEcccc
Q 028673 136 DHIK-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 136 ~~~~-------~~~~~fD~Ii~~d~~ 154 (205)
+... ..-+++|.++.+--.
T Consensus 73 ~~~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 73 EAVAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4321 112468888876443
No 330
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.49 E-value=1 Score=38.37 Aligned_cols=38 Identities=32% Similarity=0.398 Sum_probs=26.2
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHH
Q 028673 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPL 100 (205)
Q Consensus 63 ~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~ 100 (205)
.++.+|+=+|+|. |...+..++ .|++|+.+|. ++.++.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~ 205 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQ 205 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHH
Confidence 3567799999984 655555554 4889999998 554333
No 331
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=89.43 E-value=0.13 Score=35.82 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=29.0
Q ss_pred CccEEEEcccccC------CcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 144 PFDYIIGTDVVYA------EHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 144 ~fD~Ii~~d~~y~------~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
+||+|+|-.+.=+ .+.+..+++.+..+|+|||.+++..+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 4899999887744 33466899999999999999998854
No 332
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=89.30 E-value=0.43 Score=37.10 Aligned_cols=113 Identities=9% Similarity=0.027 Sum_probs=60.3
Q ss_pred CeEEEeCCCccHHHHHHHHhCCE--EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-Cccc-
Q 028673 66 KRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA- 140 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~g~~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~-~~~~- 140 (205)
..+.|||||-|-+-+.++.+... +.+.++ ..+.+..+..+..-...- ...-..++.+....--..- .+..
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~-----a~~~~~ni~vlr~namk~lpn~f~k 136 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTS-----AEGQYPNISVLRTNAMKFLPNFFEK 136 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccc-----cccccccceeeeccchhhccchhhh
Confidence 46899999999777777877654 888888 667777777765543110 0011223333332111100 0000
Q ss_pred CCCCccEEEEcccccCCc------ChHhHHHHHHHhhCCCcEEEEEEee
Q 028673 141 VAPPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILVMFSL 183 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~------~~~~ll~~~~~~l~~~g~~~i~~~~ 183 (205)
..-+-+..+.-|+=+... .-..++....-++++||.+|.....
T Consensus 137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 000112223223222211 1235777788889999999887653
No 333
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=88.86 E-value=0.54 Score=38.99 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=47.5
Q ss_pred EEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC---CCc-c
Q 028673 69 IELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE---DHI-K 139 (205)
Q Consensus 69 LdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~---~~~-~ 139 (205)
+|+|.|+- .|..+ +.+...++||+ +-.++.+..|+.+|+. .+.+.+....-... +.. .
T Consensus 107 iDIgtgas--ci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~l-----------ss~ikvV~~~~~ktll~d~~~~ 173 (419)
T KOG2912|consen 107 IDIGTGAS--CIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNL-----------SSLIKVVKVEPQKTLLMDALKE 173 (419)
T ss_pred eeccCchh--hhHHhhhchhccceeeeeeccccccchhhcccccccc-----------ccceeeEEecchhhcchhhhcc
Confidence 78877653 33333 23556999999 5578999999999954 44555544321110 111 1
Q ss_pred cCCCCccEEEEcccccCC
Q 028673 140 AVAPPFDYIIGTDVVYAE 157 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~ 157 (205)
..+..||+..+++++|..
T Consensus 174 ~~e~~ydFcMcNPPFfe~ 191 (419)
T KOG2912|consen 174 ESEIIYDFCMCNPPFFEN 191 (419)
T ss_pred CccceeeEEecCCchhhc
Confidence 123469999999999874
No 334
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=88.80 E-value=7.3 Score=32.04 Aligned_cols=93 Identities=23% Similarity=0.282 Sum_probs=50.8
Q ss_pred CCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 64 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 64 ~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
++.+||-.|||. |...+.+++ .|. +|++++. ++..+.+++ ...+ .+....-.......
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~-~g~~-----------------~vi~~~~~~~~~~~ 226 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA-MGAD-----------------ETVNLARDPLAAYA 226 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-cCCC-----------------EEEcCCchhhhhhh
Confidence 688898898874 556555554 477 6999987 554443332 1100 01100000000111
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
.....+|+++.+- .....++.+.+.|+++|+++..
T Consensus 227 ~~~~~vd~vld~~------g~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 227 ADKGDFDVVFEAS------GAPAALASALRVVRPGGTVVQV 261 (339)
T ss_pred ccCCCccEEEECC------CCHHHHHHHHHHHhcCCEEEEE
Confidence 1123589888651 1134566777888999988764
No 335
>PRK11524 putative methyltransferase; Provisional
Probab=88.70 E-value=0.47 Score=38.75 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=31.5
Q ss_pred CCCccEEEEcccccCC----------------cChHhHHHHHHHhhCCCcEEEEEEee
Q 028673 142 APPFDYIIGTDVVYAE----------------HLLEPLLQTIFALSGPKTTILVMFSL 183 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~----------------~~~~~ll~~~~~~l~~~g~~~i~~~~ 183 (205)
+++||+|+++++++.. ..+..++..+.++|+|+|.+++....
T Consensus 25 ~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 25 SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 5689999998776421 11246888999999999999987554
No 336
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=88.50 E-value=1.4 Score=36.86 Aligned_cols=94 Identities=22% Similarity=0.202 Sum_probs=52.6
Q ss_pred CCCCCeEEEeCC-C-ccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEe----ecC
Q 028673 62 KLKGKRVIELGA-G-CGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL----DWG 133 (205)
Q Consensus 62 ~~~~~~VLdlGc-G-tGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~----dw~ 133 (205)
..+|.+||=.|+ | .|...+.+|+. |++|++++. ++-.+.+++. .+. . .+... ++.
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa-------------~-~vi~~~~~~~~~ 218 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGF-------------D-EAFNYKEEPDLD 218 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCC-------------C-EEEECCCcccHH
Confidence 346789999998 4 47777777764 889999887 4444443321 221 0 11111 111
Q ss_pred CCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 134 NEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 134 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
+.- .......+|+|+-+ +- ...+....++++++|++++.
T Consensus 219 ~~i-~~~~~~gvD~v~d~--vG-----~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 219 AAL-KRYFPEGIDIYFDN--VG-----GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred HHH-HHHCCCCcEEEEEC--CC-----HHHHHHHHHHhccCCEEEEE
Confidence 000 00112358888743 22 24567777888999998765
No 337
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=88.16 E-value=2 Score=36.28 Aligned_cols=59 Identities=10% Similarity=0.126 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh----------CCEEEEEcCcchHHHHHHH
Q 028673 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL----------GCNVITTDQIEVLPLLKRN 104 (205)
Q Consensus 42 ~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~----------g~~v~~~D~~~~l~~~~~n 104 (205)
+..++.|+.+.-.+. .......++|+|+|+|.+..-+.+. ..++..++.+.-+...+++
T Consensus 59 Gella~~~~~~wq~~----g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~ 127 (370)
T COG1565 59 GELLAEQFLQLWQEL----GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKE 127 (370)
T ss_pred HHHHHHHHHHHHHHh----cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHH
Confidence 345677765532111 1112347999999999877655432 3579999994434444443
No 338
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.11 E-value=0.6 Score=37.65 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=33.2
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcc
Q 028673 60 PSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE 96 (205)
Q Consensus 60 ~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~ 96 (205)
..+.+|+.+.||-+|||++|-.+.+.|..|++-|++.
T Consensus 23 k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ 59 (330)
T COG3392 23 KEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEY 59 (330)
T ss_pred hcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHH
Confidence 4566888999999999999999999999999999854
No 339
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.01 E-value=1.3 Score=31.17 Aligned_cols=77 Identities=23% Similarity=0.282 Sum_probs=47.3
Q ss_pred CeEEEeCCCc-cHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673 66 KRVIELGAGC-GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (205)
Q Consensus 66 ~~VLdlGcGt-Gl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~ 144 (205)
.+|.|+|-|- =-.+-.++++|..|++||+.+. ++. . -+.+..-|..++ .
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~------~a~-~---------------g~~~v~DDitnP--------~ 64 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK------TAP-E---------------GLRFVVDDITNP--------N 64 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCCcEEEEecccc------cCc-c---------------cceEEEccCCCc--------c
Confidence 4899999986 3567788889999999999442 212 1 234444333322 2
Q ss_pred ccEEEEcccccCCcChHhHHHHHHHhhC
Q 028673 145 FDYIIGTDVVYAEHLLEPLLQTIFALSG 172 (205)
Q Consensus 145 fD~Ii~~d~~y~~~~~~~ll~~~~~~l~ 172 (205)
.-+--+++.+|.....+++.+.+.++.+
T Consensus 65 ~~iY~~A~lIYSiRpppEl~~~ildva~ 92 (129)
T COG1255 65 ISIYEGADLIYSIRPPPELQSAILDVAK 92 (129)
T ss_pred HHHhhCccceeecCCCHHHHHHHHHHHH
Confidence 2223345666776666667666666543
No 340
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.98 E-value=6.8 Score=31.89 Aligned_cols=41 Identities=34% Similarity=0.405 Sum_probs=29.4
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHH
Q 028673 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVE 106 (205)
Q Consensus 66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~ 106 (205)
++|.=+|+|+ | .++..+++.|.+|++.|. ++.++.++.+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 3677789885 3 445555667889999999 677777776654
No 341
>PRK07326 short chain dehydrogenase; Provisional
Probab=87.94 E-value=5.7 Score=30.72 Aligned_cols=76 Identities=22% Similarity=0.287 Sum_probs=43.5
Q ss_pred CCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 64 KGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
.+++||=.|+ +|.+|..++ ..|++|++++. ++..+.+...+... ..+.+...|..+....
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~D~~~~~~~ 69 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--------------GNVLGLAADVRDEADV 69 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--------------CcEEEEEccCCCHHHH
Confidence 4688999996 454555554 44889999987 54333333332211 2456667676654322
Q ss_pred cc-------CCCCccEEEEcccc
Q 028673 139 KA-------VAPPFDYIIGTDVV 154 (205)
Q Consensus 139 ~~-------~~~~fD~Ii~~d~~ 154 (205)
.. ..+++|.|+.+.-.
T Consensus 70 ~~~~~~~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 70 QRAVDAIVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 11 12468988866433
No 342
>PRK06139 short chain dehydrogenase; Provisional
Probab=87.93 E-value=1.9 Score=36.00 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=49.2
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
.++++||=.|++.|+- +..+++.|++|++++. ++.++.+...++..+ .++.+...|..+.+..
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g-------------~~~~~~~~Dv~d~~~v 71 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG-------------AEVLVVPTDVTDADQV 71 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeeCCCHHHH
Confidence 4678999999866542 3334456899999988 555655555554432 2466677777765432
Q ss_pred cc-------CCCCccEEEEccc
Q 028673 139 KA-------VAPPFDYIIGTDV 153 (205)
Q Consensus 139 ~~-------~~~~fD~Ii~~d~ 153 (205)
.. ..+++|++|.+--
T Consensus 72 ~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 72 KALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHHHHHHhcCCCCEEEECCC
Confidence 11 1257899887643
No 343
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=87.85 E-value=7.4 Score=31.62 Aligned_cols=95 Identities=27% Similarity=0.353 Sum_probs=52.5
Q ss_pred eEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCC
Q 028673 67 RVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (205)
Q Consensus 67 ~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~ 143 (205)
+|+=+|||. | .++..+++.|.+|++++. ++.++.+++ ++.... ...... .. ........ ..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~--------~~~~~~-~~--~~~~~~~~-~~ 65 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLE--------DGEITV-PV--LAADDPAE-LG 65 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCccc--------CCceee-cc--cCCCChhH-cC
Confidence 577788885 3 456666677889999998 554443332 222110 001110 00 00111111 25
Q ss_pred CccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 144 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
++|+|+.+=. ....+.+++.+...+.++..++..
T Consensus 66 ~~d~vila~k---~~~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 66 PQDLVILAVK---AYQLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred CCCEEEEecc---cccHHHHHHHHhhhcCCCCEEEEe
Confidence 7999988733 235678888888888777665543
No 344
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=87.70 E-value=3.3 Score=35.18 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=24.0
Q ss_pred CCCeEEEeCCCc-cHHHHHHHHh-CCEEEEEcC
Q 028673 64 KGKRVIELGAGC-GVAGFGMALL-GCNVITTDQ 94 (205)
Q Consensus 64 ~~~~VLdlGcGt-Gl~sl~~a~~-g~~v~~~D~ 94 (205)
.+.+||=.|||. |+..+.+|+. |++|+++|.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~ 210 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISR 210 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeC
Confidence 578888899874 7777766754 888888886
No 345
>PLN02740 Alcohol dehydrogenase-like
Probab=87.68 E-value=1.7 Score=36.82 Aligned_cols=41 Identities=29% Similarity=0.256 Sum_probs=29.3
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHH
Q 028673 62 KLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLK 102 (205)
Q Consensus 62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~ 102 (205)
...|.+||=+|||. |+..+.+|+. |+ +|+++|. ++-++.++
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~ 240 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGK 240 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH
Confidence 34678999999875 7776666654 77 5999998 55555554
No 346
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=87.19 E-value=6.6 Score=29.42 Aligned_cols=45 Identities=22% Similarity=0.150 Sum_probs=34.3
Q ss_pred CCCccEEEEcccccC-------------CcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 142 APPFDYIIGTDVVYA-------------EHLLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~-------------~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
..+||.|+-+-+--. ...+..+++.+..+|+++|.+.|+.....+
T Consensus 73 ~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 73 NQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred CCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 568999998854433 123556788888899999999999887665
No 347
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=87.16 E-value=1.8 Score=35.91 Aligned_cols=39 Identities=41% Similarity=0.583 Sum_probs=27.2
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEEcC-cchHHHH
Q 028673 63 LKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLL 101 (205)
Q Consensus 63 ~~~~~VLdlGcGt-Gl~sl~~a~-~g~~-v~~~D~-~~~l~~~ 101 (205)
..+.+||=+|||+ |...+.+|+ .|++ |+++|. ++-.+.+
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~ 201 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALA 201 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence 3578899899875 766666665 4776 788887 5544443
No 348
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.00 E-value=2.5 Score=35.14 Aligned_cols=93 Identities=22% Similarity=0.227 Sum_probs=51.5
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC-
Q 028673 62 KLKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED- 136 (205)
Q Consensus 62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~- 136 (205)
..++.+||=.|+|. |...+.+|+. |.. |+++|. ++-.+.+++ .+. -.+.. .....
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~--------------~~~v~--~~~~~~ 223 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGA--------------TDIVD--YKNGDV 223 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCC--------------ceEec--CCCCCH
Confidence 33578888888874 6666666654 774 899988 544444442 111 01111 11110
Q ss_pred --Cc--ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 137 --HI--KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 137 --~~--~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
.. ......+|+|+-+ ......+..+.++++++|+++..
T Consensus 224 ~~~i~~~~~~~~~d~vld~------~g~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 224 VEQILKLTGGKGVDAVIIA------GGGQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred HHHHHHHhCCCCCcEEEEC------CCCHHHHHHHHHHhhcCCEEEEe
Confidence 00 0112468888753 12235677778888899987754
No 349
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.98 E-value=2.8 Score=34.25 Aligned_cols=103 Identities=18% Similarity=0.174 Sum_probs=56.4
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCC-----CCCCceEEEEeecCCCCC
Q 028673 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS-----DLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~-----~~~~~i~~~~~dw~~~~~ 137 (205)
++|-=+|+|+ | -++..++..|.+|+..|. ++.++.+...+..+.....+....+ ....++.+. .+ .+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~-~~---~~- 80 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFT-TD---LG- 80 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEee-CC---HH-
Confidence 3688889986 3 445666777999999999 7787777766654432111110000 001122221 11 11
Q ss_pred cccCCCCccEEEEcccccCCcChHhHHHHHHHhh-CCCcEE
Q 028673 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALS-GPKTTI 177 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l-~~~g~~ 177 (205)
.-...|+|+-+ +.-..+.-..++..+.+++ +|+..+
T Consensus 81 ---~~~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il 117 (286)
T PRK07819 81 ---DFADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVL 117 (286)
T ss_pred ---HhCCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEE
Confidence 12356888775 2233344447778888877 555443
No 350
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=86.86 E-value=4.7 Score=33.79 Aligned_cols=33 Identities=30% Similarity=0.312 Sum_probs=23.4
Q ss_pred CCCeEEEeCCCc-cHHHHHHHHh-CCEEEEEcC-cc
Q 028673 64 KGKRVIELGAGC-GVAGFGMALL-GCNVITTDQ-IE 96 (205)
Q Consensus 64 ~~~~VLdlGcGt-Gl~sl~~a~~-g~~v~~~D~-~~ 96 (205)
.+.+||=.|+|. |...+.+|+. |++|++++. ++
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~ 215 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDK 215 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 577888888864 7766666654 778777766 44
No 351
>PRK08265 short chain dehydrogenase; Provisional
Probab=86.68 E-value=7.4 Score=30.88 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=44.5
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
.+++++|=.|++.|+ ++..+++.|++|+++|. ++-++.+.+.+ + .++.+...|..+.+..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~--------------~~~~~~~~Dl~~~~~~ 67 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL--G--------------ERARFIATDITDDAAI 67 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--C--------------CeeEEEEecCCCHHHH
Confidence 467899999976553 23333456899999998 44232222211 1 2466777777766432
Q ss_pred c-------cCCCCccEEEEcccc
Q 028673 139 K-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 139 ~-------~~~~~fD~Ii~~d~~ 154 (205)
. ..-++.|+++.+--+
T Consensus 68 ~~~~~~~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 68 ERAVATVVARFGRVDILVNLACT 90 (261)
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 1 112468988876543
No 352
>PRK05867 short chain dehydrogenase; Provisional
Probab=86.65 E-value=3.3 Score=32.64 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=47.6
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
.++++++|=.|++.|+- +..+++.|++|++++. ++.++.+...+...+ .++.....|..+.+.
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~D~~~~~~ 72 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-------------GKVVPVCCDVSQHQQ 72 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------------CeEEEEEccCCCHHH
Confidence 35688999999876642 3333456899999988 554444444333221 245666767665542
Q ss_pred cc-------cCCCCccEEEEcccc
Q 028673 138 IK-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 138 ~~-------~~~~~fD~Ii~~d~~ 154 (205)
.. ..-++.|.++.+.-+
T Consensus 73 ~~~~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 73 VTSMLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 21 112478988876544
No 353
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.34 E-value=1.9 Score=34.79 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=25.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC-------CEEEEEcC
Q 028673 64 KGKRVIELGAGCGVAGFGMALLG-------CNVITTDQ 94 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~g-------~~v~~~D~ 94 (205)
++..++|+|||.|.+|-.+++.- ..++++|.
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 45589999999999999998652 35999998
No 354
>PRK07109 short chain dehydrogenase; Provisional
Probab=86.26 E-value=12 Score=31.25 Aligned_cols=80 Identities=24% Similarity=0.285 Sum_probs=48.5
Q ss_pred CCCCCeEEEeCCCccHHH---HHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~s---l~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
..++++||=.|++.|+-. ..+++.|++|++++. ++.++.+...++..+ .++.+...|..+.+.
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g-------------~~~~~v~~Dv~d~~~ 71 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG-------------GEALAVVADVADAEA 71 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-------------CcEEEEEecCCCHHH
Confidence 346788999998665422 233456899999988 555555554444321 246677777766543
Q ss_pred ccc-------CCCCccEEEEcccc
Q 028673 138 IKA-------VAPPFDYIIGTDVV 154 (205)
Q Consensus 138 ~~~-------~~~~fD~Ii~~d~~ 154 (205)
... .-+++|+++.+--+
T Consensus 72 v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 72 VQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCc
Confidence 211 12478988876543
No 355
>PRK06701 short chain dehydrogenase; Provisional
Probab=86.18 E-value=8.2 Score=31.33 Aligned_cols=79 Identities=20% Similarity=0.160 Sum_probs=44.8
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cc-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
.++++++|=.|++.|+ ++..+++.|++|++++. ++ ..+.....++.. ..++.+...|..+.+
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~ 109 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE-------------GVKCLLIPGDVSDEA 109 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc-------------CCeEEEEEccCCCHH
Confidence 5568899999986654 23333456899998887 32 233332222221 124667777776654
Q ss_pred Cccc-------CCCCccEEEEccc
Q 028673 137 HIKA-------VAPPFDYIIGTDV 153 (205)
Q Consensus 137 ~~~~-------~~~~fD~Ii~~d~ 153 (205)
.... ...++|++|.+--
T Consensus 110 ~~~~~~~~i~~~~~~iD~lI~~Ag 133 (290)
T PRK06701 110 FCKDAVEETVRELGRLDILVNNAA 133 (290)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCc
Confidence 3211 1246898876543
No 356
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=86.17 E-value=4.8 Score=33.21 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=54.6
Q ss_pred CCeEEEeCCCc--cHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCC
Q 028673 65 GKRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (205)
Q Consensus 65 ~~~VLdlGcGt--Gl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~ 142 (205)
..+|+=+|+|. |+++..+++.|.+|+++.... .+. +..++...... .....+......... ...
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~----~~~~g~~~~~~------~~~~~~~~~~~~~~~---~~~ 70 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEA----VRENGLQVDSV------HGDFHLPPVQAYRSA---EDM 70 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHH----HHhCCeEEEeC------CCCeeecCceEEcch---hhc
Confidence 35799999995 467777788899998887743 222 23343211000 001111111111111 123
Q ss_pred CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
.++|+|+.+=-.| ....+++.+..++++++.++..
T Consensus 71 ~~~D~vilavK~~---~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 71 PPCDWVLVGLKTT---ANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred CCCCEEEEEecCC---ChHhHHHHHhhhcCCCCEEEEe
Confidence 5799998873333 3456778888888888865543
No 357
>PRK08324 short chain dehydrogenase; Validated
Probab=85.92 E-value=6.5 Score=36.24 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=45.0
Q ss_pred CCCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
...+++||=.|++.| +|..+ ++.|++|+++|. ++.++.+...+... .++.+...|..+.+
T Consensus 419 ~l~gk~vLVTGasgg-IG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--------------~~v~~v~~Dvtd~~ 483 (681)
T PRK08324 419 PLAGKVALVTGAAGG-IGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--------------DRALGVACDVTDEA 483 (681)
T ss_pred CCCCCEEEEecCCCH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--------------CcEEEEEecCCCHH
Confidence 346789999997544 33333 345889999998 54433333222111 24667777766654
Q ss_pred Ccc-------cCCCCccEEEEcccc
Q 028673 137 HIK-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 137 ~~~-------~~~~~fD~Ii~~d~~ 154 (205)
... ...+++|+|+.+--+
T Consensus 484 ~v~~~~~~~~~~~g~iDvvI~~AG~ 508 (681)
T PRK08324 484 AVQAAFEEAALAFGGVDIVVSNAGI 508 (681)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 321 112468998876543
No 358
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=85.85 E-value=4.7 Score=31.84 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=47.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
.++++++|=.|+ +|.+|..++ +.|++|+.++. ++-++.+...+... ..++.+...|..+.+
T Consensus 9 ~~~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-------------~~~~~~~~~Dl~d~~ 74 (259)
T PRK08213 9 DLSGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL-------------GIDALWIAADVADEA 74 (259)
T ss_pred CcCCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEEccCCCHH
Confidence 457889999995 444555555 34889999988 44444444333322 124667787777654
Q ss_pred Ccc-------cCCCCccEEEEcccc
Q 028673 137 HIK-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 137 ~~~-------~~~~~fD~Ii~~d~~ 154 (205)
... ...+++|.|+.+.-.
T Consensus 75 ~i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 75 DIERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 331 112468988876543
No 359
>PRK07063 short chain dehydrogenase; Provisional
Probab=85.85 E-value=3.4 Score=32.66 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=48.3
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
.++++++|=.|++.|+ ++..+++.|++|++++. ++.++.+...+.... ...++.+...|..+.+.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Dl~~~~~ 72 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV-----------AGARVLAVPADVTDAAS 72 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc-----------CCceEEEEEccCCCHHH
Confidence 3568899999987653 23334456899999998 554544444443210 12356677777766543
Q ss_pred ccc-------CCCCccEEEEccc
Q 028673 138 IKA-------VAPPFDYIIGTDV 153 (205)
Q Consensus 138 ~~~-------~~~~fD~Ii~~d~ 153 (205)
... ..+++|.++.+--
T Consensus 73 ~~~~~~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 73 VAAAVAAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHHHHHHHHHhCCCcEEEECCC
Confidence 211 1247898887643
No 360
>PRK05854 short chain dehydrogenase; Provisional
Probab=85.74 E-value=5.5 Score=32.78 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=49.1
Q ss_pred CCCCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 61 SKLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
.+.+++++|=.|++.|+- +..+++.|++|++++. ++-.+.+...+.... ...++.+..+|..+.+
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~-----------~~~~v~~~~~Dl~d~~ 78 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV-----------PDAKLSLRALDLSSLA 78 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-----------CCCceEEEEecCCCHH
Confidence 355788999999877642 2233456899998887 443443433333221 1235677788877654
Q ss_pred Ccc-------cCCCCccEEEEcccc
Q 028673 137 HIK-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 137 ~~~-------~~~~~fD~Ii~~d~~ 154 (205)
... ...++.|++|.+--+
T Consensus 79 sv~~~~~~~~~~~~~iD~li~nAG~ 103 (313)
T PRK05854 79 SVAALGEQLRAEGRPIHLLINNAGV 103 (313)
T ss_pred HHHHHHHHHHHhCCCccEEEECCcc
Confidence 321 123578988866433
No 361
>PRK06949 short chain dehydrogenase; Provisional
Probab=85.58 E-value=3.6 Score=32.34 Aligned_cols=79 Identities=29% Similarity=0.409 Sum_probs=46.6
Q ss_pred CCCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
..++++||=.|++.| +|..++ +.|++|++++. ++.++.+...+... ..++.+...|..+.+
T Consensus 6 ~~~~k~ilItGasg~-IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~ 71 (258)
T PRK06949 6 NLEGKVALVTGASSG-LGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE-------------GGAAHVVSLDVTDYQ 71 (258)
T ss_pred CCCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHH
Confidence 456889999995443 444444 45889999988 55444444433322 124667777776543
Q ss_pred Ccc-------cCCCCccEEEEcccc
Q 028673 137 HIK-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 137 ~~~-------~~~~~fD~Ii~~d~~ 154 (205)
... ...+++|+|+.+.-.
T Consensus 72 ~~~~~~~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 72 SIKAAVAHAETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 221 112468988876543
No 362
>PRK08339 short chain dehydrogenase; Provisional
Probab=85.20 E-value=3.6 Score=32.82 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=47.5
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
+++++++|=.|++.|+ ++..+++.|++|+++|. ++-++.+...+.... ..++.+...|..+.+.
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~~~~~ 72 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES------------NVDVSYIVADLTKRED 72 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEecCCCHHH
Confidence 3578899999987764 23344456999999998 554444444433210 1246677777776543
Q ss_pred ccc------CCCCccEEEEcc
Q 028673 138 IKA------VAPPFDYIIGTD 152 (205)
Q Consensus 138 ~~~------~~~~fD~Ii~~d 152 (205)
... .-+++|+++.+-
T Consensus 73 i~~~~~~~~~~g~iD~lv~na 93 (263)
T PRK08339 73 LERTVKELKNIGEPDIFFFST 93 (263)
T ss_pred HHHHHHHHHhhCCCcEEEECC
Confidence 211 124688887664
No 363
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=85.14 E-value=4.4 Score=29.27 Aligned_cols=99 Identities=23% Similarity=0.254 Sum_probs=52.0
Q ss_pred EEEeCCCc-c-HHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCc
Q 028673 68 VIELGAGC-G-VAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF 145 (205)
Q Consensus 68 VLdlGcGt-G-l~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~f 145 (205)
|+=+|+|. | +++-.+++.|.+|++++.+.-++. ++.++..+.... ....+.... ..... .....+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~----~~~~g~~~~~~~----~~~~~~~~~-~~~~~---~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEA----IKEQGLTITGPD----GDETVQPPI-VISAP---SADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHH----HHHHCEEEEETT----EEEEEEEEE-EESSH---GHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHh----hhheeEEEEecc----cceeccccc-ccCcc---hhccCCC
Confidence 34567774 3 444555566889999998443332 333433211100 000111111 11111 1135689
Q ss_pred cEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 146 DYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 146 D~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
|+|+.+ -.....+..++.++..+++++.+++..
T Consensus 69 D~viv~---vKa~~~~~~l~~l~~~~~~~t~iv~~q 101 (151)
T PF02558_consen 69 DLVIVA---VKAYQLEQALQSLKPYLDPNTTIVSLQ 101 (151)
T ss_dssp SEEEE----SSGGGHHHHHHHHCTGEETTEEEEEES
T ss_pred cEEEEE---ecccchHHHHHHHhhccCCCcEEEEEe
Confidence 999987 233466788888999999986665543
No 364
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=85.10 E-value=3.2 Score=32.38 Aligned_cols=80 Identities=23% Similarity=0.259 Sum_probs=47.2
Q ss_pred CCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
..+++||=.|++ |.+|..++ +.|++|++++. ++.+......+...+ .++.+...|+.+.+.
T Consensus 4 ~~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dl~~~~~ 69 (251)
T PRK12826 4 LEGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-------------GKARARQVDVRDRAA 69 (251)
T ss_pred CCCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEECCCCCHHH
Confidence 357889988865 44455544 45889999987 444443433333321 246777878776543
Q ss_pred ccc-------CCCCccEEEEcccccC
Q 028673 138 IKA-------VAPPFDYIIGTDVVYA 156 (205)
Q Consensus 138 ~~~-------~~~~fD~Ii~~d~~y~ 156 (205)
... .-+++|.|+.+...+.
T Consensus 70 ~~~~~~~~~~~~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 70 LKAAVAAGVEDFGRLDILVANAGIFP 95 (251)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 211 1236898887754443
No 365
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.70 E-value=3.1 Score=34.37 Aligned_cols=108 Identities=22% Similarity=0.283 Sum_probs=70.3
Q ss_pred CeEEEeCCCccHHHHHHHHh-CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc-cc---
Q 028673 66 KRVIELGAGCGVAGFGMALL-GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KA--- 140 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~-g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~-~~--- 140 (205)
..|+-||||-=.=+..+-.. +.+|.=+|+|++++.=++.++..+.. .....+.+..|..+.+-. ..
T Consensus 94 ~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~---------~~~~~~~Va~Dl~~~dw~~~L~~~ 164 (297)
T COG3315 94 RQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGAT---------PPAHRRLVAVDLREDDWPQALAAA 164 (297)
T ss_pred cEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCC---------CCceEEEEeccccccchHHHHHhc
Confidence 67999999943211111111 45688899999988877777766431 122466666666532211 11
Q ss_pred --CCCCccEEEEcccccC--CcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 141 --VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 141 --~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.....=++++-.++.+ ++....+++.|..+..||..++..+.
T Consensus 165 G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 165 GFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 1234557777777755 55677999999999999999988885
No 366
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=84.64 E-value=5.3 Score=31.44 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=47.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
.+++++||=.|+. |-+|..++ ..|++|++++. ++.++.+...++..+ .++.....|..+.+
T Consensus 7 ~~~~k~vlItGa~-g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-------------~~~~~~~~D~~~~~ 72 (255)
T PRK07523 7 DLTGRRALVTGSS-QGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG-------------LSAHALAFDVTDHD 72 (255)
T ss_pred CCCCCEEEEECCc-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-------------ceEEEEEccCCCHH
Confidence 4578999999964 44455544 45889999988 444444444443321 24566676776654
Q ss_pred Ccc-------cCCCCccEEEEcccc
Q 028673 137 HIK-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 137 ~~~-------~~~~~fD~Ii~~d~~ 154 (205)
... ....+.|.++.+.-.
T Consensus 73 ~~~~~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 73 AVRAAIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 321 112468888877544
No 367
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=84.62 E-value=3 Score=34.42 Aligned_cols=96 Identities=25% Similarity=0.254 Sum_probs=48.9
Q ss_pred CCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 64 KGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 64 ~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
++.+||-.|+|. |...+.+|+. |. .|++++. ++..+.+++ .+.. ..+.....++.+.-...
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~-----------~vi~~~~~~~~~~i~~~ 231 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGAT-----------DIINPKNGDIVEQILEL 231 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCc-----------EEEcCCcchHHHHHHHH
Confidence 567888888763 6666666654 75 6888876 444443332 2110 00111111111100000
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
.....+|+++-+ +- ....+....+.++++|+++..
T Consensus 232 ~~~~~~d~vld~--~g----~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 232 TGGRGVDCVIEA--VG----FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cCCCCCcEEEEc--cC----CHHHHHHHHHHhhcCCEEEEE
Confidence 112468988753 21 124666667788888887654
No 368
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.45 E-value=4.7 Score=33.67 Aligned_cols=102 Identities=20% Similarity=0.167 Sum_probs=55.3
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCC-CCCCCceEEEEeecCCCCCcccC
Q 028673 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG-SDLLGSIQAVELDWGNEDHIKAV 141 (205)
Q Consensus 66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~-~~~~~~i~~~~~dw~~~~~~~~~ 141 (205)
++|-=+|+|+ | -++..++..|.+|++.|. ++.++.++..++............ .....++.+.. .+...
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-------~l~~a 80 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-------TIEAC 80 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-------CHHHH
Confidence 4688889986 4 345556678999999999 777766665554332111100000 00001122111 11111
Q ss_pred CCCccEEEEcccccCCcChHhHHHHHHHhhCCCc
Q 028673 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKT 175 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g 175 (205)
-..-|+|+-+ +....+.-..+++.+.+.++|+.
T Consensus 81 v~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~a 113 (321)
T PRK07066 81 VADADFIQES-APEREALKLELHERISRAAKPDA 113 (321)
T ss_pred hcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCe
Confidence 2356777765 33334445577888888888776
No 369
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=84.42 E-value=4.8 Score=32.54 Aligned_cols=108 Identities=20% Similarity=0.274 Sum_probs=51.9
Q ss_pred HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCc--c-HHHHH-HHHh---CCEEEEEcCcchHHHHHHHHHHhhhhhccCC
Q 028673 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC--G-VAGFG-MALL---GCNVITTDQIEVLPLLKRNVEWNTSRISQMN 116 (205)
Q Consensus 44 ~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGt--G-l~sl~-~a~~---g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~ 116 (205)
.|..|+.... .....+.+||-||+|+ | .+|-. +.+. ++-++-.|+.+.+.
T Consensus 47 QLCqYln~~t------laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vS----------------- 103 (299)
T PF06460_consen 47 QLCQYLNKTT------LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVS----------------- 103 (299)
T ss_dssp HHHHHHTTS-----------TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B------------------
T ss_pred HHHHHhcccc------EeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhcc-----------------
Confidence 4666664321 2233578999999996 5 34443 3443 55566666644211
Q ss_pred CCCCCCCceEEEEeecCCCCCcccCCCCccEEEEcccccC-------------CcChHhHHHHHHHhhCCCcEEEEEEee
Q 028673 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-------------EHLLEPLLQTIFALSGPKTTILVMFSL 183 (205)
Q Consensus 117 ~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~-------------~~~~~~ll~~~~~~l~~~g~~~i~~~~ 183 (205)
+.-.....|.... ..+.+||+|++- +|. ...+.-+...++..|+-||.+.+-..-
T Consensus 104 ------Da~~~~~~Dc~t~----~~~~k~DlIiSD--mYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE 171 (299)
T PF06460_consen 104 ------DADQSIVGDCRTY----MPPDKFDLIISD--MYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITE 171 (299)
T ss_dssp ------SSSEEEES-GGGE----EESS-EEEEEE------TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-S
T ss_pred ------ccCCceecccccc----CCCCcccEEEEe--cccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeec
Confidence 1112333332222 235699999984 452 233556777778889999998887654
Q ss_pred ccc
Q 028673 184 SMF 186 (205)
Q Consensus 184 r~~ 186 (205)
...
T Consensus 172 ~Sw 174 (299)
T PF06460_consen 172 HSW 174 (299)
T ss_dssp SS-
T ss_pred ccc
Confidence 444
No 370
>PRK05876 short chain dehydrogenase; Provisional
Probab=84.39 E-value=4.8 Score=32.40 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=46.3
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
++++++|=.|++.|+- +..+++.|++|+++|. ++.++.+...+...+ .++.+...|..+.+..
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~-------------~~~~~~~~Dv~d~~~v 70 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG-------------FDVHGVMCDVRHREEV 70 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEeCCCCCHHHH
Confidence 5788999999877642 2233456899999998 444443333332221 2456667777665432
Q ss_pred c-------cCCCCccEEEEcccc
Q 028673 139 K-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 139 ~-------~~~~~fD~Ii~~d~~ 154 (205)
. ...++.|+++.+--+
T Consensus 71 ~~~~~~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 71 THLADEAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 1 112468988776543
No 371
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=84.19 E-value=3.7 Score=38.15 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=59.9
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCC-----CCCCCceEEEEeecCCCCC
Q 028673 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG-----SDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~-----~~~~~~i~~~~~dw~~~~~ 137 (205)
++|-=+|+|+ | -++..++..|.+|+..|. ++.++.+...+..+.........- .....+++... +. .
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~---~- 388 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-SY---A- 388 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CH---H-
Confidence 4688999997 3 456667788999999999 778877776665442211000000 00011222211 11 1
Q ss_pred cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEE
Q 028673 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~ 177 (205)
.-...|+||=+ +.-..+.-..+++.+.+.++|+..+
T Consensus 389 ---~~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~il 424 (714)
T TIGR02437 389 ---GFDNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAIL 424 (714)
T ss_pred ---HhcCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEE
Confidence 12357888765 3344455568888888888887553
No 372
>PRK08862 short chain dehydrogenase; Provisional
Probab=84.18 E-value=4.8 Score=31.46 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=46.4
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
++++++|=.|++.|+ ++..+++.|++|++++. ++.++.+.+.+...+ ..+.....|..+.+..
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~-------------~~~~~~~~D~~~~~~~ 69 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT-------------DNVYSFQLKDFSQESI 69 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------------CCeEEEEccCCCHHHH
Confidence 467899999999885 34445567999999987 555554444443322 2344445555544322
Q ss_pred c-------cCCC-CccEEEEcc
Q 028673 139 K-------AVAP-PFDYIIGTD 152 (205)
Q Consensus 139 ~-------~~~~-~fD~Ii~~d 152 (205)
. ..-+ ++|+++.+-
T Consensus 70 ~~~~~~~~~~~g~~iD~li~na 91 (227)
T PRK08862 70 RHLFDAIEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHHHHHHHhCCCCCEEEECC
Confidence 1 1113 789888764
No 373
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=84.10 E-value=3.9 Score=32.66 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=27.2
Q ss_pred CeEEEeCCCccHHHHHHHHh----------CCEEEEEcC-cchHHHHHHHHH
Q 028673 66 KRVIELGAGCGVAGFGMALL----------GCNVITTDQ-IEVLPLLKRNVE 106 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~----------g~~v~~~D~-~~~l~~~~~n~~ 106 (205)
-+|+|+|+|+|.++.-+.+. ..+++.+|. +.+.+.-++.+.
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 58999999999887766542 237999999 555444444443
No 374
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.90 E-value=4.6 Score=32.93 Aligned_cols=103 Identities=20% Similarity=0.230 Sum_probs=55.2
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCC-----CCCCceEEEEeecCCCCC
Q 028673 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS-----DLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~-----~~~~~i~~~~~dw~~~~~ 137 (205)
++|.=+|+|+ | .++..++..|.+|++.|. ++.++.+...+..+.........-+ ....++.+. ...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-----~~~- 78 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-----TDL- 78 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-----CCH-
Confidence 4677889986 3 445566677889999999 6776665554443321000000000 000112221 111
Q ss_pred cccCCCCccEEEEcccccC-CcChHhHHHHHHHhhCCCcEEE
Q 028673 138 IKAVAPPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTIL 178 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~~y~-~~~~~~ll~~~~~~l~~~g~~~ 178 (205)
.. -...|+|+.+ +.. ......+++.+...++++..++
T Consensus 79 -~~-~~~aD~Viea--vpe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 79 -ED-LADCDLVIEA--ATEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred -HH-hcCCCEEEEc--CcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 11 2367888876 322 2345577788888888877554
No 375
>PRK08267 short chain dehydrogenase; Provisional
Probab=83.89 E-value=9.8 Score=29.97 Aligned_cols=73 Identities=22% Similarity=0.231 Sum_probs=42.8
Q ss_pred CeEEEeCCCccHHHHH----HHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 66 KRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~----~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
+++|=.|++.|+ |.. +++.|++|++++. ++.++.+...+. ..++.+...|..+......
T Consensus 2 k~vlItGasg~i-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------------~~~~~~~~~D~~~~~~v~~ 65 (260)
T PRK08267 2 KSIFITGAASGI-GRATALLFAAEGWRVGAYDINEAGLAALAAELG---------------AGNAWTGALDVTDRAAWDA 65 (260)
T ss_pred cEEEEeCCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---------------CCceEEEEecCCCHHHHHH
Confidence 468888876543 333 3455889999987 544444433222 1246777878776543211
Q ss_pred --------CCCCccEEEEcccc
Q 028673 141 --------VAPPFDYIIGTDVV 154 (205)
Q Consensus 141 --------~~~~fD~Ii~~d~~ 154 (205)
..+++|+++.+--+
T Consensus 66 ~~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 66 ALADFAAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHHHHHHcCCCCCEEEECCCC
Confidence 03578988876443
No 376
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=83.71 E-value=4.3 Score=32.23 Aligned_cols=80 Identities=19% Similarity=0.180 Sum_probs=49.5
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
..+++++|=.|++.|+- ...++..|++|+.++. ++.++.+..+++..+ .++.+...|..+.+.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~~~ 73 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG-------------IEAHGYVCDVTDEDG 73 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEcCCCCHHH
Confidence 45788999999987643 2334456899988887 554454444443321 246677777776543
Q ss_pred cc-------cCCCCccEEEEcccc
Q 028673 138 IK-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 138 ~~-------~~~~~fD~Ii~~d~~ 154 (205)
.. ..-+++|.++.+--+
T Consensus 74 ~~~~~~~~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 74 VQAMVSQIEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCC
Confidence 21 112468999877554
No 377
>PRK07806 short chain dehydrogenase; Provisional
Probab=83.65 E-value=19 Score=28.04 Aligned_cols=104 Identities=18% Similarity=0.188 Sum_probs=53.7
Q ss_pred CCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cc-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
.+++++|=.|+..| +|..++ +.|.+|++++. ++ ..+.+...++.. ..++.+...|..+.+
T Consensus 4 ~~~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~ 69 (248)
T PRK07806 4 LPGKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA-------------GGRASAVGADLTDEE 69 (248)
T ss_pred CCCcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc-------------CCceEEEEcCCCCHH
Confidence 46789999997544 344443 45888888776 32 233333222221 124566677776654
Q ss_pred Ccc-------cCCCCccEEEEcccccCC-------------cChHhHHHHHHHhhCCCcEEEEE
Q 028673 137 HIK-------AVAPPFDYIIGTDVVYAE-------------HLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 137 ~~~-------~~~~~fD~Ii~~d~~y~~-------------~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
... ..-..+|+++.+--.... ...-.+++.+...++.+|.+++.
T Consensus 70 ~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 70 SVAALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 321 111367887755322110 01224666666665555555544
No 378
>PRK07062 short chain dehydrogenase; Provisional
Probab=83.65 E-value=7.7 Score=30.68 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=48.3
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
+.+++++|=.|++.|+- +..+++.|++|++++. ++-++.+...+.... ...++.....|..+.+.
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----------~~~~~~~~~~D~~~~~~ 73 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKF-----------PGARLLAARCDVLDEAD 73 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC-----------CCceEEEEEecCCCHHH
Confidence 45789999999877642 3333456899999988 554444443333221 01246667777776543
Q ss_pred cc-------cCCCCccEEEEcccc
Q 028673 138 IK-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 138 ~~-------~~~~~fD~Ii~~d~~ 154 (205)
.. ..-++.|+++.+--+
T Consensus 74 v~~~~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 74 VAAFAAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 21 112468988776543
No 379
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=83.35 E-value=5.7 Score=30.86 Aligned_cols=105 Identities=15% Similarity=0.027 Sum_probs=57.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CCE--EEEEcCcchH-----------HHHHHHHHHhhhhhccCCCCCCCCCceEE
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALL-GCN--VITTDQIEVL-----------PLLKRNVEWNTSRISQMNPGSDLLGSIQA 127 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~-g~~--v~~~D~~~~l-----------~~~~~n~~~n~~~~~~~~~~~~~~~~i~~ 127 (205)
...|.+|+|+=-|.|...-.++.. |++ |++.=-.+.. ..+++-...|. ++
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~----------------e~ 109 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANV----------------EV 109 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhh----------------hh
Confidence 446789999999999998888865 443 5554221111 11111112221 11
Q ss_pred EEeecCCCCCcccCCCCccEEEEccccc-------CCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 128 VELDWGNEDHIKAVAPPFDYIIGTDVVY-------AEHLLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 128 ~~~dw~~~~~~~~~~~~fD~Ii~~d~~y-------~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
..-..-.. . .....|+++.+...+ +......+-..+.+.|||||.+++..+.-..
T Consensus 110 ~~~~~~A~---~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~p 171 (238)
T COG4798 110 IGKPLVAL---G-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADP 171 (238)
T ss_pred hCCccccc---C-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccC
Confidence 11000000 1 233455554432221 1456778889999999999999988765444
No 380
>PRK05866 short chain dehydrogenase; Provisional
Probab=83.23 E-value=4.8 Score=32.78 Aligned_cols=79 Identities=24% Similarity=0.334 Sum_probs=46.8
Q ss_pred CCCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
...+++||=.|++.|+ |..+ ++.|++|++++. ++.++.+...+... ...+.+...|..+.+
T Consensus 37 ~~~~k~vlItGasggI-G~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~-------------~~~~~~~~~Dl~d~~ 102 (293)
T PRK05866 37 DLTGKRILLTGASSGI-GEAAAEQFARRGATVVAVARREDLLDAVADRITRA-------------GGDAMAVPCDLSDLD 102 (293)
T ss_pred CCCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHH
Confidence 4467899999986654 4333 455889999998 55444444433221 124566677766654
Q ss_pred Ccc-------cCCCCccEEEEcccc
Q 028673 137 HIK-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 137 ~~~-------~~~~~fD~Ii~~d~~ 154 (205)
... ...++.|+++.+--+
T Consensus 103 ~v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 103 AVDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 221 112478998876433
No 381
>PRK07814 short chain dehydrogenase; Provisional
Probab=83.20 E-value=20 Score=28.29 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=45.7
Q ss_pred CCCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
..+++++|=.|++.| +|..++ +.|++|++++. ++.++.+...+... ..++.+...|..+.+
T Consensus 7 ~~~~~~vlItGasgg-IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~ 72 (263)
T PRK07814 7 RLDDQVAVVTGAGRG-LGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA-------------GRRAHVVAADLAHPE 72 (263)
T ss_pred cCCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHH
Confidence 356889999997544 455444 45889999998 54444444333221 124666777776654
Q ss_pred Ccc-------cCCCCccEEEEcc
Q 028673 137 HIK-------AVAPPFDYIIGTD 152 (205)
Q Consensus 137 ~~~-------~~~~~fD~Ii~~d 152 (205)
... ..-+++|+|+.+-
T Consensus 73 ~~~~~~~~~~~~~~~id~vi~~A 95 (263)
T PRK07814 73 ATAGLAGQAVEAFGRLDIVVNNV 95 (263)
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 321 0124789888654
No 382
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=83.14 E-value=5.7 Score=31.03 Aligned_cols=75 Identities=23% Similarity=0.220 Sum_probs=43.3
Q ss_pred CeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc--
Q 028673 66 KRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-- 138 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~-- 138 (205)
++||=.|+. |.+|..++ +.|.+|++++. ++-.+.+...+... ..++.+...|+.+.+..
T Consensus 2 ~~vlItGa~-g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~ 67 (255)
T TIGR01963 2 KTALVTGAA-SGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA-------------GGSVIYLVADVTKEDEIAD 67 (255)
T ss_pred CEEEEcCCc-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEECCCCCHHHHHH
Confidence 467777754 44455554 34889999988 54444443333222 13567778788776422
Q ss_pred -----ccCCCCccEEEEcccc
Q 028673 139 -----KAVAPPFDYIIGTDVV 154 (205)
Q Consensus 139 -----~~~~~~fD~Ii~~d~~ 154 (205)
....++.|.|+.+...
T Consensus 68 ~~~~~~~~~~~~d~vi~~a~~ 88 (255)
T TIGR01963 68 MIAAAAAEFGGLDILVNNAGI 88 (255)
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 1123468888876543
No 383
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=83.10 E-value=14 Score=28.54 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCCCCeEEEeCCCc-cHH-HHHHHHhCCEEEEEcC
Q 028673 62 KLKGKRVIELGAGC-GVA-GFGMALLGCNVITTDQ 94 (205)
Q Consensus 62 ~~~~~~VLdlGcGt-Gl~-sl~~a~~g~~v~~~D~ 94 (205)
+++|++||=+|+|. |.. .-.+...|++|+.++-
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 46899999999985 432 2344566888888863
No 384
>PRK06172 short chain dehydrogenase; Provisional
Probab=82.82 E-value=3.3 Score=32.54 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=47.3
Q ss_pred CCCCeEEEeCCCccHHH---HHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 63 LKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~s---l~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
++++++|=.|++.|+-. ..+++.|++|++++. ++-++.+...+... ..++.+...|..+....
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~i 71 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA-------------GGEALFVACDVTRDAEV 71 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEcCCCCHHHH
Confidence 46889999998665422 233455889999998 55444444444332 13467777777665422
Q ss_pred c-------cCCCCccEEEEcccc
Q 028673 139 K-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 139 ~-------~~~~~fD~Ii~~d~~ 154 (205)
. ...+++|.|+.+.-.
T Consensus 72 ~~~~~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 72 KALVEQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 1 112468998876543
No 385
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=82.57 E-value=7.7 Score=31.79 Aligned_cols=96 Identities=20% Similarity=0.178 Sum_probs=51.5
Q ss_pred CCCCCeEEEeCC-C-ccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEe-ecCCCC
Q 028673 62 KLKGKRVIELGA-G-CGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL-DWGNED 136 (205)
Q Consensus 62 ~~~~~~VLdlGc-G-tGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~-dw~~~~ 136 (205)
..+|.+||=.|+ | .|...+.+|+. |++|++++. ++-.+.++. .+.. .-+..... +|.+..
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~-----------~vi~~~~~~~~~~~~ 200 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD-----------VAFNYKTVKSLEETL 200 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC-----------EEEeccccccHHHHH
Confidence 346789998985 3 47777777764 888888887 544444432 2210 00111100 111100
Q ss_pred CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
. ....+.+|+|+-+ +- ...+....++++++|+++..
T Consensus 201 ~-~~~~~gvdvv~d~--~G-----~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 201 K-KASPDGYDCYFDN--VG-----GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred H-HhCCCCeEEEEEC--CC-----HHHHHHHHHHhCcCcEEEEe
Confidence 0 0112358888743 21 13456777888999998865
No 386
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.47 E-value=4.8 Score=37.42 Aligned_cols=103 Identities=21% Similarity=0.203 Sum_probs=58.8
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCC-----CCCCceEEEEeecCCCCC
Q 028673 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS-----DLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~-----~~~~~i~~~~~dw~~~~~ 137 (205)
++|.=||+|+ | -++..+|..|.+|+..|. ++.++.+...++.+.....+...-+ ....++.+.. +. +
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~---~- 388 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTL-DY---A- 388 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CH---H-
Confidence 4789999997 3 456667788999999999 7788777666654322111100000 0012233211 11 1
Q ss_pred cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEE
Q 028673 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~ 177 (205)
.-...|+||=+ +.-..+.-..+++.+.+.++|+..+
T Consensus 389 ---~~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~il 424 (715)
T PRK11730 389 ---GFERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTIL 424 (715)
T ss_pred ---HhcCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEE
Confidence 12356777765 3333444557888888888777543
No 387
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=82.36 E-value=13 Score=31.74 Aligned_cols=40 Identities=35% Similarity=0.347 Sum_probs=26.0
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEEcC-cchHHHHH
Q 028673 63 LKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLK 102 (205)
Q Consensus 63 ~~~~~VLdlGcGt-Gl~sl~~a~~-g~~-v~~~D~-~~~l~~~~ 102 (205)
..+.+||=.|+|. |+..+.+|+. |++ |+.+|. ++-++.++
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~ 227 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQAR 227 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHH
Confidence 3567777688875 7777666654 776 666677 44444444
No 388
>PRK09242 tropinone reductase; Provisional
Probab=82.32 E-value=8.6 Score=30.26 Aligned_cols=81 Identities=12% Similarity=0.222 Sum_probs=47.3
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
.++++++|=.|++.|+- ...+++.|++|++++. ++.++....++.... ...++.....|..+.+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~-----------~~~~~~~~~~Dl~~~~~ 74 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEF-----------PEREVHGLAADVSDDED 74 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC-----------CCCeEEEEECCCCCHHH
Confidence 35788999999866542 2233455889999988 554554444443321 01346666767665432
Q ss_pred cc-------cCCCCccEEEEccc
Q 028673 138 IK-------AVAPPFDYIIGTDV 153 (205)
Q Consensus 138 ~~-------~~~~~fD~Ii~~d~ 153 (205)
.. ..-+++|.++.+--
T Consensus 75 ~~~~~~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 75 RRAILDWVEDHWDGLHILVNNAG 97 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 21 11247898876653
No 389
>PRK07035 short chain dehydrogenase; Provisional
Probab=82.22 E-value=7.8 Score=30.36 Aligned_cols=79 Identities=19% Similarity=0.295 Sum_probs=46.1
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
.+++++||=.|++.|+- ...+++.|++|++++. ++.++.+.+.+...+ .++.....|..+...
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~ 71 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG-------------GKAEALACHIGEMEQ 71 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEEcCCCCHHH
Confidence 35678899999887643 2233456889999998 554444443333221 235566666665543
Q ss_pred cc-------cCCCCccEEEEccc
Q 028673 138 IK-------AVAPPFDYIIGTDV 153 (205)
Q Consensus 138 ~~-------~~~~~fD~Ii~~d~ 153 (205)
.. ..-+++|+++.+-.
T Consensus 72 ~~~~~~~~~~~~~~id~li~~ag 94 (252)
T PRK07035 72 IDALFAHIRERHGRLDILVNNAA 94 (252)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 21 11246899886543
No 390
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=82.12 E-value=5.9 Score=31.15 Aligned_cols=79 Identities=20% Similarity=0.311 Sum_probs=46.8
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
+.++++|=.|++.|+- +..+++.|++|++++. ++.++.+...++.. ..++.....|..+.+..
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~~ 73 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE-------------GIKAHAAPFNVTHKQEV 73 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc-------------CCeEEEEecCCCCHHHH
Confidence 4688999999776532 2233445889999998 54444443333322 12456667777765432
Q ss_pred c-------cCCCCccEEEEcccc
Q 028673 139 K-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 139 ~-------~~~~~fD~Ii~~d~~ 154 (205)
. ...+++|.++.+--.
T Consensus 74 ~~~~~~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 74 EAAIEHIEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHHHHHHHhcCCCCEEEECCCc
Confidence 1 112468999877543
No 391
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=82.05 E-value=3.6 Score=34.02 Aligned_cols=37 Identities=35% Similarity=0.534 Sum_probs=25.6
Q ss_pred CeEEEeCC-C-ccHHHHHHHHh-CC-EEEEEcC-cchHHHHH
Q 028673 66 KRVIELGA-G-CGVAGFGMALL-GC-NVITTDQ-IEVLPLLK 102 (205)
Q Consensus 66 ~~VLdlGc-G-tGl~sl~~a~~-g~-~v~~~D~-~~~l~~~~ 102 (205)
.+||=.|+ | .|...+.+|+. |+ +|++++. ++-.+.++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~ 197 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLK 197 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 78998987 3 47777777764 87 7999887 44444443
No 392
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=81.98 E-value=3.5 Score=30.98 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=27.3
Q ss_pred CCCCCCeEEEeCCC-c-cH-HHHHHHHhCCEEEEEcC
Q 028673 61 SKLKGKRVIELGAG-C-GV-AGFGMALLGCNVITTDQ 94 (205)
Q Consensus 61 ~~~~~~~VLdlGcG-t-Gl-~sl~~a~~g~~v~~~D~ 94 (205)
..+++++||=+|+| + |. ++-.+...|++|+.++.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r 76 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHS 76 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEEC
Confidence 46789999999999 3 76 56666677889888886
No 393
>PRK06194 hypothetical protein; Provisional
Probab=81.97 E-value=4.2 Score=32.66 Aligned_cols=78 Identities=19% Similarity=0.283 Sum_probs=44.7
Q ss_pred CCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
.+++++|=.|++.|+ |..+ ++.|++|+++|. ++.++.....+... ..++.+...|..+.+.
T Consensus 4 ~~~k~vlVtGasggI-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~d~~~ 69 (287)
T PRK06194 4 FAGKVAVITGAASGF-GLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ-------------GAEVLGVRTDVSDAAQ 69 (287)
T ss_pred CCCCEEEEeCCccHH-HHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHH
Confidence 357889988876543 4443 445889999998 44444333322221 1246667777665543
Q ss_pred ccc-------CCCCccEEEEcccc
Q 028673 138 IKA-------VAPPFDYIIGTDVV 154 (205)
Q Consensus 138 ~~~-------~~~~fD~Ii~~d~~ 154 (205)
... ..+++|+|+.+--+
T Consensus 70 ~~~~~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 70 VEALADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 211 12467988876544
No 394
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=81.91 E-value=12 Score=29.69 Aligned_cols=91 Identities=19% Similarity=0.195 Sum_probs=50.0
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 62 KLKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
..++.+||=.|||. |...+.+|+. |.+ |++++. ++-.+.+++ .+.. ..+ .. ... .
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~----~g~~-----------~~~--~~--~~~-~- 153 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEA----LGPA-----------DPV--AA--DTA-D- 153 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHH----cCCC-----------ccc--cc--cch-h-
Confidence 34677888888874 6666656654 777 999987 554443332 1100 000 00 000 0
Q ss_pred cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
......+|+|+-+ . .....+....+.++++|+++..
T Consensus 154 -~~~~~~~d~vl~~--~----~~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 154 -EIGGRGADVVIEA--S----GSPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred -hhcCCCCCEEEEc--c----CChHHHHHHHHHhcCCcEEEEE
Confidence 0113468888753 1 1134566667778888887654
No 395
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.86 E-value=16 Score=28.18 Aligned_cols=78 Identities=26% Similarity=0.300 Sum_probs=45.5
Q ss_pred CCCCeEEEeCCCccHHHHHHH----HhCCEEEEE-cC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITT-DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~-D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
+.++++|=.|+ +|-+|..++ +.|++|+.+ +. ++..+.+...+... ..++.+...|..+.+
T Consensus 3 ~~~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~ 68 (247)
T PRK05565 3 LMGKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE-------------GGDAIAVKADVSSEE 68 (247)
T ss_pred CCCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHH
Confidence 45678888886 444555444 458898887 87 44444333333322 134677787777664
Q ss_pred Cccc-------CCCCccEEEEcccc
Q 028673 137 HIKA-------VAPPFDYIIGTDVV 154 (205)
Q Consensus 137 ~~~~-------~~~~fD~Ii~~d~~ 154 (205)
.... ..+++|.|+.+.-.
T Consensus 69 ~~~~~~~~~~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 69 DVENLVEQIVEKFGKIDILVNNAGI 93 (247)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCc
Confidence 3211 11368998876543
No 396
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=81.67 E-value=6.4 Score=31.07 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=45.7
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
.+++++||=.|++.|+- +..+++.|++|++++..+-.+.+.+.+... ..++.+...|..+.+..
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~i 78 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKE-------------GRKVTFVQVDLTKPESA 78 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhc-------------CCceEEEEcCCCCHHHH
Confidence 45789999999977643 223345689988887643223333322221 13466777777665432
Q ss_pred c-------cCCCCccEEEEccc
Q 028673 139 K-------AVAPPFDYIIGTDV 153 (205)
Q Consensus 139 ~-------~~~~~fD~Ii~~d~ 153 (205)
. ..-+++|.++.+.-
T Consensus 79 ~~~~~~~~~~~g~id~li~~ag 100 (258)
T PRK06935 79 EKVVKEALEEFGKIDILVNNAG 100 (258)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 1 11246898887643
No 397
>PRK06181 short chain dehydrogenase; Provisional
Probab=81.60 E-value=14 Score=29.09 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=42.1
Q ss_pred CeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 66 KRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
++||=.|+..| +|..+ +..|++|++++. ++..+.+...+... ..++.+...|..+.+....
T Consensus 2 ~~vlVtGasg~-iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~~~~ 67 (263)
T PRK06181 2 KVVIITGASEG-IGRALAVRLARAGAQLVLAARNETRLASLAQELADH-------------GGEALVVPTDVSDAEACER 67 (263)
T ss_pred CEEEEecCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHHHHH
Confidence 46777776443 44444 345889999998 44444333333322 1356677777766543211
Q ss_pred -------CCCCccEEEEcccc
Q 028673 141 -------VAPPFDYIIGTDVV 154 (205)
Q Consensus 141 -------~~~~fD~Ii~~d~~ 154 (205)
.-++.|.|+.+--.
T Consensus 68 ~~~~~~~~~~~id~vi~~ag~ 88 (263)
T PRK06181 68 LIEAAVARFGGIDILVNNAGI 88 (263)
T ss_pred HHHHHHHHcCCCCEEEECCCc
Confidence 11368988876443
No 398
>PRK06125 short chain dehydrogenase; Provisional
Probab=81.58 E-value=8.7 Score=30.29 Aligned_cols=79 Identities=24% Similarity=0.339 Sum_probs=47.2
Q ss_pred CCCCeEEEeCCCccHHHHH----HHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~----~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
++++++|=.|++.|+ |.. +++.|++|++++. ++..+.+...+.... ..++.+...|..+.+.
T Consensus 5 ~~~k~vlItG~~~gi-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~D~~~~~~ 71 (259)
T PRK06125 5 LAGKRVLITGASKGI-GAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH------------GVDVAVHALDLSSPEA 71 (259)
T ss_pred CCCCEEEEeCCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEecCCCHHH
Confidence 467899999986653 333 4456899999998 554444444333221 1246667777766543
Q ss_pred cc---cCCCCccEEEEcccc
Q 028673 138 IK---AVAPPFDYIIGTDVV 154 (205)
Q Consensus 138 ~~---~~~~~fD~Ii~~d~~ 154 (205)
.. ..-++.|.++.+.-+
T Consensus 72 ~~~~~~~~g~id~lv~~ag~ 91 (259)
T PRK06125 72 REQLAAEAGDIDILVNNAGA 91 (259)
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 21 112478888876543
No 399
>PRK05872 short chain dehydrogenase; Provisional
Probab=81.54 E-value=5.1 Score=32.58 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=46.4
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
..+++++||=.|++.|+ ++..+++.|++|++++. ++.++.+.+.+.. ...+.....|..+.+
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~--------------~~~~~~~~~Dv~d~~ 70 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG--------------DDRVLTVVADVTDLA 70 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC--------------CCcEEEEEecCCCHH
Confidence 35678999999987664 23333456899999988 4444333322211 123444556776654
Q ss_pred Ccc-------cCCCCccEEEEcccc
Q 028673 137 HIK-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 137 ~~~-------~~~~~fD~Ii~~d~~ 154 (205)
... ...+++|++|.+--+
T Consensus 71 ~v~~~~~~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 71 AMQAAAEEAVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 321 112578999887554
No 400
>PRK07478 short chain dehydrogenase; Provisional
Probab=81.41 E-value=5.5 Score=31.33 Aligned_cols=79 Identities=23% Similarity=0.196 Sum_probs=46.1
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
++++++|=.|++.|+- ...+++.|++|++++. ++-++.+...++..+ .++.+...|..+.+..
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~~ 70 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG-------------GEAVALAGDVRDEAYA 70 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCCHHHH
Confidence 4678899888876532 2333456899999987 554444444433321 2456667676655422
Q ss_pred c-------cCCCCccEEEEcccc
Q 028673 139 K-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 139 ~-------~~~~~fD~Ii~~d~~ 154 (205)
. ..-+++|.++.+--+
T Consensus 71 ~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 71 KALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHHHHHHhcCCCCEEEECCCC
Confidence 1 112478988866533
No 401
>PRK07774 short chain dehydrogenase; Provisional
Probab=81.40 E-value=6.7 Score=30.60 Aligned_cols=78 Identities=24% Similarity=0.330 Sum_probs=44.7
Q ss_pred CCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
.+++++|=.|+. |.+|..++ +.|++|++++. ++..+.+...+... ..++.....|..+.+.
T Consensus 4 ~~~k~vlItGas-g~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~ 69 (250)
T PRK07774 4 FDDKVAIVTGAA-GGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD-------------GGTAIAVQVDVSDPDS 69 (250)
T ss_pred cCCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHH
Confidence 467889988854 44455554 45889999998 44444443333221 1234566666665542
Q ss_pred cc-------cCCCCccEEEEcccc
Q 028673 138 IK-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 138 ~~-------~~~~~fD~Ii~~d~~ 154 (205)
.. ...+++|+||.+--+
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 70 AKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 21 112468999876544
No 402
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.34 E-value=3.1 Score=31.66 Aligned_cols=61 Identities=18% Similarity=0.185 Sum_probs=47.9
Q ss_pred EEEEeecCCCCCccc-CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 126 QAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 126 ~~~~~dw~~~~~~~~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
++..+|...+.+++. ...+||+|++-+++...+.+.+-..+++.+.+++-+++++..-+..
T Consensus 116 eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCtGeime 177 (217)
T KOG3350|consen 116 EFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCTGEIME 177 (217)
T ss_pred eeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEechhHhH
Confidence 667777777765442 3567999999888888888889999999999998888888765543
No 403
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=81.28 E-value=5.7 Score=28.48 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=43.6
Q ss_pred CCCCCCeEEEeCCCc-c-HHHHHHHHhCCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 61 SKLKGKRVIELGAGC-G-VAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 61 ~~~~~~~VLdlGcGt-G-l~sl~~a~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
..+++++||=+|+|- | .....++..|++ |+.+.. .+-.+.+.+.+ .+ ..+....|.+..
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--~~---------------~~~~~~~~~~~~ 70 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--GG---------------VNIEAIPLEDLE 70 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--TG---------------CSEEEEEGGGHC
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--Cc---------------cccceeeHHHHH
Confidence 356899999999983 3 344455566876 999887 44222222222 11 123333444433
Q ss_pred CcccCCCCccEEEEcccccCC
Q 028673 137 HIKAVAPPFDYIIGTDVVYAE 157 (205)
Q Consensus 137 ~~~~~~~~fD~Ii~~d~~y~~ 157 (205)
....++|+|+.+-..-+.
T Consensus 71 ---~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 71 ---EALQEADIVINATPSGMP 88 (135)
T ss_dssp ---HHHHTESEEEE-SSTTST
T ss_pred ---HHHhhCCeEEEecCCCCc
Confidence 123479999988655443
No 404
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=81.23 E-value=9.2 Score=33.24 Aligned_cols=105 Identities=21% Similarity=0.215 Sum_probs=63.9
Q ss_pred eEEEeCC-Cc------cHHHHHHHHhCCE--EEEEcC--cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673 67 RVIELGA-GC------GVAGFGMALLGCN--VITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (205)
Q Consensus 67 ~VLdlGc-Gt------Gl~sl~~a~~g~~--v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~ 135 (205)
.|+=+|= |+ |=++.++.++|.+ ++++|. |.+++.++....+-+. .+...+-+..
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v---------------~~f~~~~~~~ 166 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGV---------------PFFGSGTEKD 166 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCC---------------ceecCCCCCC
Confidence 4666653 43 4556666676776 788997 7799999988777643 3333211111
Q ss_pred C-Cc------ccCCCCccEEEEcccccCCcChHhHHH---HHHHhhCCCcEEEEEEeeccch
Q 028673 136 D-HI------KAVAPPFDYIIGTDVVYAEHLLEPLLQ---TIFALSGPKTTILVMFSLSMFS 187 (205)
Q Consensus 136 ~-~~------~~~~~~fD~Ii~~d~~y~~~~~~~ll~---~~~~~l~~~g~~~i~~~~r~~~ 187 (205)
+ +. ......||+||. |+--..+.-+.|+. .++..++|.=++++++..-.+.
T Consensus 167 Pv~Iak~al~~ak~~~~DvvIv-DTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd 227 (451)
T COG0541 167 PVEIAKAALEKAKEEGYDVVIV-DTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD 227 (451)
T ss_pred HHHHHHHHHHHHHHcCCCEEEE-eCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH
Confidence 1 00 012457999987 55444444445554 4566689999999998754443
No 405
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=81.08 E-value=28 Score=28.23 Aligned_cols=84 Identities=19% Similarity=0.227 Sum_probs=54.1
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
..+.++.+|-=|...|+ ++..+++.|++|+.++. ++.++..+......+. ...++.....|..+.+
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~ 73 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGY----------TGGKVLAIVCDVSKEV 73 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC----------CCCeeEEEECcCCCHH
Confidence 45689999999998874 45677788999999998 6666665555444322 1234666666665443
Q ss_pred Cc--------ccCCCCccEEEEcccc
Q 028673 137 HI--------KAVAPPFDYIIGTDVV 154 (205)
Q Consensus 137 ~~--------~~~~~~fD~Ii~~d~~ 154 (205)
+. ....++.|+.+.+.-.
T Consensus 74 ~~~~l~~~~~~~~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 74 DVEKLVEFAVEKFFGKIDILVNNAGA 99 (270)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCCc
Confidence 21 1114678888766433
No 406
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=81.03 E-value=1.2 Score=40.18 Aligned_cols=33 Identities=21% Similarity=0.064 Sum_probs=27.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEEcC
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ 94 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~---g~~v~~~D~ 94 (205)
.-++..||||||-.|.....+++. |.-|+++|+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl 77 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDL 77 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeee
Confidence 335678999999999999998876 345999998
No 407
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=81.02 E-value=10 Score=30.89 Aligned_cols=98 Identities=20% Similarity=0.192 Sum_probs=50.9
Q ss_pred eEEEeCCCc-c-HHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCC
Q 028673 67 RVIELGAGC-G-VAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (205)
Q Consensus 67 ~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~ 144 (205)
+|+=+|+|. | .++..+++.|.+|++++.++-++.++ .++...... ...... . .............
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~----~~g~~~~~~------~~~~~~-~--~~~~~~~~~~~~~ 68 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALR----ERGLVIRSD------HGDAVV-P--GPVITDPEELTGP 68 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHH----hCCeEEEeC------CCeEEe-c--ceeecCHHHccCC
Confidence 467788886 3 45666667788899998733333322 222211000 000110 0 0001111111357
Q ss_pred ccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 145 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 145 fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
+|+|+.+-. ....+.+++.+...++++..++..
T Consensus 69 ~d~vilavk---~~~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 69 FDLVILAVK---AYQLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred CCEEEEEec---ccCHHHHHHHHHhhcCCCCEEEEe
Confidence 898877633 235678888888888777654433
No 408
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=80.97 E-value=13 Score=28.69 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=22.6
Q ss_pred CCCCeEEEeCCCc-c-HHHHHHHHhCCE-EEEEcCc
Q 028673 63 LKGKRVIELGAGC-G-VAGFGMALLGCN-VITTDQI 95 (205)
Q Consensus 63 ~~~~~VLdlGcGt-G-l~sl~~a~~g~~-v~~~D~~ 95 (205)
+++.+||=+|||. | -+...++..|.. ++.+|..
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3678999999985 3 334445566764 9999863
No 409
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.96 E-value=6.4 Score=30.59 Aligned_cols=77 Identities=22% Similarity=0.165 Sum_probs=43.9
Q ss_pred CCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
.+++++|=.|+ +|.+|..++ ..|++|++++. ++..+.....+... ..++.+...|..+...
T Consensus 5 ~~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~ 70 (239)
T PRK07666 5 LQGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY-------------GVKVVIATADVSDYEE 70 (239)
T ss_pred CCCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-------------CCeEEEEECCCCCHHH
Confidence 45678888996 555566554 44889999998 44333333333222 1246666666655432
Q ss_pred cc-------cCCCCccEEEEccc
Q 028673 138 IK-------AVAPPFDYIIGTDV 153 (205)
Q Consensus 138 ~~-------~~~~~fD~Ii~~d~ 153 (205)
.. ...++.|.|+.+--
T Consensus 71 ~~~~~~~~~~~~~~id~vi~~ag 93 (239)
T PRK07666 71 VTAAIEQLKNELGSIDILINNAG 93 (239)
T ss_pred HHHHHHHHHHHcCCccEEEEcCc
Confidence 21 11246888887643
No 410
>PRK07890 short chain dehydrogenase; Provisional
Probab=80.96 E-value=7.8 Score=30.40 Aligned_cols=78 Identities=23% Similarity=0.240 Sum_probs=45.4
Q ss_pred CCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 64 KGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
++++||=.|++.|+- +..++..|++|++++. ++-.+.+...+... ..++.....|..+.+...
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~ 70 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL-------------GRRALAVPTDITDEDQCA 70 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh-------------CCceEEEecCCCCHHHHH
Confidence 578899899866532 2334456889999998 54334333333222 124667777776554321
Q ss_pred -------cCCCCccEEEEcccc
Q 028673 140 -------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 140 -------~~~~~fD~Ii~~d~~ 154 (205)
..-+++|+|+.+.-.
T Consensus 71 ~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 71 NLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHcCCccEEEECCcc
Confidence 112468988876543
No 411
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=80.96 E-value=8.1 Score=34.92 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=47.0
Q ss_pred CCCCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673 61 SKLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~ 135 (205)
+...|++||=.|+. |.+|..++ +.|++|++++. .+-++.+..++....... . . .....++.+...|..+.
T Consensus 76 ~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~-~-G--a~~~~~v~iV~gDLtD~ 150 (576)
T PLN03209 76 DTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDV-E-G--TQPVEKLEIVECDLEKP 150 (576)
T ss_pred ccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhcccc-c-c--ccccCceEEEEecCCCH
Confidence 34467888888874 44555544 45889998887 444433333332211000 0 0 00113477788787765
Q ss_pred CCcccCCCCccEEEEc
Q 028673 136 DHIKAVAPPFDYIIGT 151 (205)
Q Consensus 136 ~~~~~~~~~fD~Ii~~ 151 (205)
+.....-...|+||.+
T Consensus 151 esI~~aLggiDiVVn~ 166 (576)
T PLN03209 151 DQIGPALGNASVVICC 166 (576)
T ss_pred HHHHHHhcCCCEEEEc
Confidence 5433333568988776
No 412
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=80.85 E-value=7.6 Score=32.22 Aligned_cols=98 Identities=17% Similarity=0.134 Sum_probs=50.2
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 63 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 63 ~~~~~VLdlGcGt-Gl~sl~~a~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
.++.+||=.|+|. |...+.+++ .|+ +|++++. ++-.+.+++ .+.. .-+.....+|.+.-..
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~-----------~~i~~~~~~~~~~l~~ 235 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGAT-----------IVLDPTEVDVVAEVRK 235 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC-----------EEECCCccCHHHHHHH
Confidence 3577888888753 555555554 477 6888887 554444432 1210 0011111111100000
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
......+|+|+-+ ......++...+.++++|+++..-
T Consensus 236 ~~~~~~~d~vid~------~g~~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 236 LTGGGGVDVSFDC------AGVQATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred HhCCCCCCEEEEC------CCCHHHHHHHHHhccCCCEEEEEc
Confidence 0112348988864 111345666677888999877653
No 413
>PRK09291 short chain dehydrogenase; Provisional
Probab=80.79 E-value=6.7 Score=30.75 Aligned_cols=74 Identities=22% Similarity=0.238 Sum_probs=43.3
Q ss_pred CCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 65 GKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
+++||=.|++.|+ |..+ ++.|++|++++. ++..+.+....... ...+.+...|+.+.....
T Consensus 2 ~~~vlVtGasg~i-G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~ 67 (257)
T PRK09291 2 SKTILITGAGSGF-GREVALRLARKGHNVIAGVQIAPQVTALRAEAARR-------------GLALRVEKLDLTDAIDRA 67 (257)
T ss_pred CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcceEEEeeCCCHHHHH
Confidence 4578888886543 4433 345889998887 44333333322222 124677788887764332
Q ss_pred c-CCCCccEEEEcc
Q 028673 140 A-VAPPFDYIIGTD 152 (205)
Q Consensus 140 ~-~~~~fD~Ii~~d 152 (205)
. ...+.|+++.+-
T Consensus 68 ~~~~~~id~vi~~a 81 (257)
T PRK09291 68 QAAEWDVDVLLNNA 81 (257)
T ss_pred HHhcCCCCEEEECC
Confidence 1 123789888764
No 414
>PRK08589 short chain dehydrogenase; Validated
Probab=80.77 E-value=12 Score=29.81 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=46.4
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
++++++|=.|++.|+ ++..+++.|++|++++..+.++.....+... ..++.+...|..+.+...
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~ 70 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSN-------------GGKAKAYHVDISDEQQVK 70 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhc-------------CCeEEEEEeecCCHHHHH
Confidence 468899999987764 2333445689999998753233333333222 124667777777654321
Q ss_pred -------cCCCCccEEEEcccc
Q 028673 140 -------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 140 -------~~~~~fD~Ii~~d~~ 154 (205)
...++.|+++.+--+
T Consensus 71 ~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 71 DFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHHHHHHHcCCcCEEEECCCC
Confidence 112468988876543
No 415
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=80.77 E-value=1.7 Score=32.91 Aligned_cols=93 Identities=22% Similarity=0.293 Sum_probs=49.5
Q ss_pred CeEEEeCCCccHHHHHHHHh--CCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc---c-
Q 028673 66 KRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI---K- 139 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~---~- 139 (205)
+.|+.||||.=..+..+... +.+++=+|.|++++.-++-++.+..... .+.++...|..+..-. .
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~---------~~~~~v~~Dl~~~~~~~~L~~ 150 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPP---------ANYRYVPADLRDDSWIDALPK 150 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHH---------EESSEEES-TTSHHHHHHHHH
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCC---------cceeEEeccccchhhHHHHHH
Confidence 38999999987666666664 4468888889888877777766643110 1234566555542211 1
Q ss_pred --cCCCCccEEEEcccccC--CcChHhHHHHH
Q 028673 140 --AVAPPFDYIIGTDVVYA--EHLLEPLLQTI 167 (205)
Q Consensus 140 --~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~ 167 (205)
......-++++-.++++ ++....+++.+
T Consensus 151 ~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 151 AGFDPDRPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp CTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred hCCCCCCCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 01234445666565544 33344555443
No 416
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=80.75 E-value=3 Score=31.84 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=53.9
Q ss_pred eEEEeCCCc-cHH-HHHHHHhCCEEEEEcC-cchHHHHHHH------------HHHhhhhhccCCCCCCCCCceEEEEee
Q 028673 67 RVIELGAGC-GVA-GFGMALLGCNVITTDQ-IEVLPLLKRN------------VEWNTSRISQMNPGSDLLGSIQAVELD 131 (205)
Q Consensus 67 ~VLdlGcGt-Gl~-sl~~a~~g~~v~~~D~-~~~l~~~~~n------------~~~n~~~~~~~~~~~~~~~~i~~~~~d 131 (205)
+|-=+|.|- |+. +..+|..|.+|+++|. ++-++.+..- ++.+. ...+..+. .+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~-----------~~~~l~~t-~~ 69 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENV-----------SAGRLRAT-TD 69 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHH-----------HTTSEEEE-SE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhcccc-----------ccccchhh-hh
Confidence 455567774 533 5566678999999999 6654443311 00010 01122221 11
Q ss_pred cCCCCCcccCCCCccEEEEc-ccccCC------cChHhHHHHHHHhhCCCcEEEEEEeeccchhHHHHHHhhh
Q 028673 132 WGNEDHIKAVAPPFDYIIGT-DVVYAE------HLLEPLLQTIFALSGPKTTILVMFSLSMFSLTFFCWTRIT 197 (205)
Q Consensus 132 w~~~~~~~~~~~~fD~Ii~~-d~~y~~------~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~~~~~~~~~~~ 197 (205)
+.. .....|+++.+ ++-+.. ......++.+.+.++++..+++.....-...+...+..++
T Consensus 70 ~~~------ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile 136 (185)
T PF03721_consen 70 IEE------AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILE 136 (185)
T ss_dssp HHH------HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHH
T ss_pred hhh------hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhh
Confidence 111 01245666443 333432 3356778888888888777666655555544434433333
No 417
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=80.74 E-value=4 Score=35.33 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=52.8
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 62 ~~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
.+.|++|+=+|||. |......++ .|++|+.+|. +.-...++. .+. +.... . +
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G~---------------~~~~~--~--e-- 253 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EGY---------------EVMTM--E--E-- 253 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cCC---------------EEccH--H--H--
Confidence 45799999999996 766555554 5889999998 543333332 221 11111 0 1
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHH-HHHHhhCCCcEEEEEEe
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQ-TIFALSGPKTTILVMFS 182 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~-~~~~~l~~~g~~~i~~~ 182 (205)
.-...|+|+.+ ......+. .....+++||.++.+-.
T Consensus 254 --~v~~aDVVI~a------tG~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 254 --AVKEGDIFVTT------TGNKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred --HHcCCCEEEEC------CCCHHHHHHHHHhcCCCCcEEEEeCC
Confidence 11356888764 22234444 44778899998876653
No 418
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.71 E-value=11 Score=31.25 Aligned_cols=97 Identities=22% Similarity=0.243 Sum_probs=50.6
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeec---C-
Q 028673 62 KLKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW---G- 133 (205)
Q Consensus 62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw---~- 133 (205)
..++.+||=.|+|. |...+.+|+. |++ |++++- ++-.+.+++ + +.. .-+.....++ .
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~-~---g~~-----------~vi~~~~~~~~~~~~ 224 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE-L---GAT-----------HTVNVRTEDTPESAE 224 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-c---CCc-----------EEeccccccchhHHH
Confidence 44677887788764 6666666654 777 888876 444443322 1 110 0011111111 0
Q ss_pred CCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 134 NEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 134 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
..... .....+|+|+-+ . .....+....+.++++|+++..
T Consensus 225 ~~~~~-~~~~~~d~vld~--~----g~~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 225 KIAEL-LGGKGPDVVIEC--T----GAESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred HHHHH-hCCCCCCEEEEC--C----CCHHHHHHHHHHhhcCCEEEEE
Confidence 00000 113458988865 1 1233667777888888887654
No 419
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=80.69 E-value=18 Score=29.24 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=62.1
Q ss_pred CCCeEEEeCCCccHHHH----HHHHhCC--EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 64 KGKRVIELGAGCGVAGF----GMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl----~~a~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
.+...+|||+|+--=.- +++.+|. +.+.+|+ ...++...+.+...-. .-.+.....+....-
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~-----------~l~v~~l~~~~~~~L 146 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP-----------GLEVNALCGDYELAL 146 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC-----------CCeEeehhhhHHHHH
Confidence 46789999999763332 2334443 6999999 4555544443333211 112333333322211
Q ss_pred -CcccCCCCccEEEEcccc--cCCcChHhHHHHHHHhhCCCcEEEEEEeeccch
Q 028673 137 -HIKAVAPPFDYIIGTDVV--YAEHLLEPLLQTIFALSGPKTTILVMFSLSMFS 187 (205)
Q Consensus 137 -~~~~~~~~fD~Ii~~d~~--y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~~ 187 (205)
.++. .++==.++....+ +.+.....++..+...++||-.+++....+.+.
T Consensus 147 a~~~~-~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~A 199 (321)
T COG4301 147 AELPR-GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPA 199 (321)
T ss_pred hcccC-CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHH
Confidence 1111 1111122223333 346667789999999999999999987766654
No 420
>PRK08703 short chain dehydrogenase; Provisional
Probab=80.51 E-value=12 Score=29.03 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=27.2
Q ss_pred CCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHH
Q 028673 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNV 105 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~ 105 (205)
.++++||=.||+.| +|..++ +.|++|++++. ++.++.....+
T Consensus 4 l~~k~vlItG~sgg-iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l 50 (239)
T PRK08703 4 LSDKTILVTGASQG-LGEQVAKAYAAAGATVILVARHQKKLEKVYDAI 50 (239)
T ss_pred CCCCEEEEECCCCc-HHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHH
Confidence 46789999997544 454444 45889999998 54444443333
No 421
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=80.14 E-value=20 Score=29.51 Aligned_cols=37 Identities=27% Similarity=0.342 Sum_probs=25.6
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEEcC-cch
Q 028673 61 SKLKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEV 97 (205)
Q Consensus 61 ~~~~~~~VLdlGcGt-Gl~sl~~a-~~g~~v~~~D~-~~~ 97 (205)
....+++|+=+|+|. |...+..+ ..|++|+.+|. ++.
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~ 187 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAH 187 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 345789999999984 44433333 45889999998 443
No 422
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=80.05 E-value=5.4 Score=32.85 Aligned_cols=98 Identities=18% Similarity=0.182 Sum_probs=50.1
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 62 KLKGKRVIELGAGC-GVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
...+.+||-.|+|. |...+.+|+. |.+|+++.. ++..+.+++ .+.. .-+.....++.+.-..
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~----~g~~-----------~v~~~~~~~~~~~l~~ 221 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARE----LGAD-----------DTINVGDEDVAARLRE 221 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHH----hCCC-----------EEecCcccCHHHHHHH
Confidence 34677899998763 5565656654 888888865 444444322 1110 0011111011000000
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
......+|+++.+ + .-...+..+.+.++++|+++..
T Consensus 222 ~~~~~~vd~vld~--~----g~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 222 LTDGEGADVVIDA--T----GNPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred HhCCCCCCEEEEC--C----CCHHHHHHHHHHHhcCCEEEEE
Confidence 0113458988875 1 1134566667778888887654
No 423
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=79.72 E-value=4.2 Score=33.94 Aligned_cols=97 Identities=22% Similarity=0.207 Sum_probs=51.1
Q ss_pred CCCeEEEeCCC--ccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 64 KGKRVIELGAG--CGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 64 ~~~~VLdlGcG--tGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
.|.+||=.|+. .|.+++.+|+. |+.++++-. ++-.+.++ ..+.. .-+.....+|.+.-...
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~----~lGAd-----------~vi~y~~~~~~~~v~~~ 206 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLK----ELGAD-----------HVINYREEDFVEQVREL 206 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHH----hcCCC-----------EEEcCCcccHHHHHHHH
Confidence 48899999963 47778888875 656555544 43222222 22210 01222222232221001
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEe
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFS 182 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~ 182 (205)
.....+|+|+-+ .-...+......++++|+++..-.
T Consensus 207 t~g~gvDvv~D~-------vG~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 207 TGGKGVDVVLDT-------VGGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred cCCCCceEEEEC-------CCHHHHHHHHHHhccCCEEEEEec
Confidence 112468988875 334555556667777788766544
No 424
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=79.64 E-value=4.4 Score=37.79 Aligned_cols=103 Identities=19% Similarity=0.171 Sum_probs=58.9
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCC-----CCCCCceEEEEeecCCCCC
Q 028673 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG-----SDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~-----~~~~~~i~~~~~dw~~~~~ 137 (205)
++|-=+|+|+ | -++..++..|.+|+..|. ++.++.+...+..+.........- .....++... .+..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~---- 410 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYS---- 410 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH----
Confidence 4688999997 3 445666778999999999 788887777665543211000000 0001123221 1111
Q ss_pred cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEE
Q 028673 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (205)
Q Consensus 138 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~ 177 (205)
.-...|+||=+ +.-+.+.-..+++.+.+.++|+..+
T Consensus 411 ---~~~~aDlViEA-v~E~l~~K~~vf~~l~~~~~~~~il 446 (737)
T TIGR02441 411 ---GFKNADMVIEA-VFEDLSLKHKVIKEVEAVVPPHCII 446 (737)
T ss_pred ---HhccCCeehhh-ccccHHHHHHHHHHHHhhCCCCcEE
Confidence 12356777754 3333444557888888888887654
No 425
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=79.40 E-value=7.3 Score=30.47 Aligned_cols=76 Identities=24% Similarity=0.289 Sum_probs=45.5
Q ss_pred CCCeEEEeCCCccHHHHHHHH----hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 64 KGKRVIELGAGCGVAGFGMAL----LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~----~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
++++||=.|+ +|.+|..+++ .|.+|++++. ++..+.....+... ..++.....|..+.+..
T Consensus 3 ~~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~ 68 (258)
T PRK12429 3 KGKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA-------------GGKAIGVAMDVTDEEAI 68 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHHH
Confidence 5678887776 4555666554 4889999988 55444444433332 23567777777765432
Q ss_pred c-------cCCCCccEEEEccc
Q 028673 139 K-------AVAPPFDYIIGTDV 153 (205)
Q Consensus 139 ~-------~~~~~fD~Ii~~d~ 153 (205)
. ...+++|+|+.+--
T Consensus 69 ~~~~~~~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 69 NAGIDYAVETFGGVDILVNNAG 90 (258)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 1 11246898887643
No 426
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=79.39 E-value=16 Score=28.28 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=23.6
Q ss_pred CCCCCeEEEeCCCc-cHH-HHHHHHhCCEEEEEcC
Q 028673 62 KLKGKRVIELGAGC-GVA-GFGMALLGCNVITTDQ 94 (205)
Q Consensus 62 ~~~~~~VLdlGcGt-Gl~-sl~~a~~g~~v~~~D~ 94 (205)
+++|++||=+|.|. |.- ...+...|++|+.++-
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999995 433 2344466999888875
No 427
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=79.36 E-value=9.2 Score=30.10 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=44.7
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
.++++++|=.|++.|+ ++..+++.|++|+++|..+..+.+...+... ..++.+...|..+.+..
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~ 71 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAA-------------GGEALALTADLETYAGA 71 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhc-------------CCeEEEEEEeCCCHHHH
Confidence 4578899999987654 2333445688999999843233233332221 12456667777664322
Q ss_pred c-------cCCCCccEEEEcc
Q 028673 139 K-------AVAPPFDYIIGTD 152 (205)
Q Consensus 139 ~-------~~~~~fD~Ii~~d 152 (205)
. ...+++|+++.+-
T Consensus 72 ~~~~~~~~~~~~~id~lv~nA 92 (260)
T PRK12823 72 QAAMAAAVEAFGRIDVLINNV 92 (260)
T ss_pred HHHHHHHHHHcCCCeEEEECC
Confidence 1 1124689887654
No 428
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=79.35 E-value=19 Score=29.39 Aligned_cols=92 Identities=22% Similarity=0.217 Sum_probs=49.3
Q ss_pred CCCCeEEEeCCC-ccHHHHHHHHh-CCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 63 LKGKRVIELGAG-CGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 63 ~~~~~VLdlGcG-tGl~sl~~a~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
..+.+||-.||| .|...+.+++. |.+|+.++. ++..+.++. -+. . .+... .......
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~-------------~-~~~~~--~~~~~~~ 220 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK----LGA-------------D-EVVDS--GAELDEQ 220 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----hCC-------------c-EEecc--CCcchHH
Confidence 356788888987 46655555554 888888877 554444422 111 0 01010 0000000
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
.....+|+++.+ +- .......+.+.++++|+++..
T Consensus 221 ~~~~~~d~vi~~--~~----~~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 221 AAAGGADVILVT--VV----SGAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred hccCCCCEEEEC--CC----cHHHHHHHHHhcccCCEEEEE
Confidence 012368888753 21 123556667788888887765
No 429
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=79.29 E-value=8.7 Score=32.07 Aligned_cols=98 Identities=20% Similarity=0.285 Sum_probs=61.3
Q ss_pred CCCeEEEeCCCc-cHHHHHHH-HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 64 KGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 64 ~~~~VLdlGcGt-Gl~sl~~a-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
...+|.=||-|. |.-+--+| ..|++|+..|+ .+-++.+..- . ..++.... .....+..
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~---f-------------~~rv~~~~---st~~~iee 227 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDL---F-------------GGRVHTLY---STPSNIEE 227 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHh---h-------------CceeEEEE---cCHHHHHH
Confidence 345678888885 54444333 45899999998 4433333321 1 12344433 22222333
Q ss_pred CCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
.-.+.|++|++=.+--...+....+...+.++||+.++=+
T Consensus 228 ~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 228 AVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred HhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEE
Confidence 3468999999877766777777888888889998876543
No 430
>PLN02253 xanthoxin dehydrogenase
Probab=78.96 E-value=6.2 Score=31.55 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=45.4
Q ss_pred CCCCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673 61 SKLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~ 135 (205)
...+++++|=.|+..|+ |..+ ++.|++|+++|. ++..+.+...+.. ..++.+...|..+.
T Consensus 14 ~~l~~k~~lItGas~gI-G~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~Dl~d~ 78 (280)
T PLN02253 14 QRLLGKVALVTGGATGI-GESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG--------------EPNVCFFHCDVTVE 78 (280)
T ss_pred cccCCCEEEEECCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC--------------CCceEEEEeecCCH
Confidence 34568899999976543 4444 456899999987 4433332222211 12467777777765
Q ss_pred CCccc-------CCCCccEEEEccc
Q 028673 136 DHIKA-------VAPPFDYIIGTDV 153 (205)
Q Consensus 136 ~~~~~-------~~~~fD~Ii~~d~ 153 (205)
+.... .-++.|.++.+--
T Consensus 79 ~~~~~~~~~~~~~~g~id~li~~Ag 103 (280)
T PLN02253 79 DDVSRAVDFTVDKFGTLDIMVNNAG 103 (280)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCC
Confidence 43211 1246898876643
No 431
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=78.93 E-value=6.9 Score=31.24 Aligned_cols=78 Identities=23% Similarity=0.262 Sum_probs=45.2
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
..+++++|=.|++.|+ +...+++.|++|++++. ++..+.+...+...+ .++.+...|..+...
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~~~ 73 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG-------------GEALAVKADVLDKES 73 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEECCCCCHHH
Confidence 3467899999987654 23333456889999998 544444433333221 245666766665432
Q ss_pred ccc-------CCCCccEEEEcc
Q 028673 138 IKA-------VAPPFDYIIGTD 152 (205)
Q Consensus 138 ~~~-------~~~~fD~Ii~~d 152 (205)
... .-+++|+++.+-
T Consensus 74 v~~~~~~~~~~~g~id~li~~a 95 (278)
T PRK08277 74 LEQARQQILEDFGPCDILINGA 95 (278)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 211 124788888663
No 432
>PRK07791 short chain dehydrogenase; Provisional
Probab=78.91 E-value=12 Score=30.17 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=46.3
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-c---------chHHHHHHHHHHhhhhhccCCCCCCCCCceEEEE
Q 028673 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-I---------EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE 129 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~---------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~ 129 (205)
++++++|=.|++.|+- +..+++.|++|+.+|. . +.++.+...+... ..++.+..
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~~ 70 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA-------------GGEAVANG 70 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc-------------CCceEEEe
Confidence 4688999999987753 2334456899888876 3 3333333322222 12456666
Q ss_pred eecCCCCCcc-------cCCCCccEEEEccccc
Q 028673 130 LDWGNEDHIK-------AVAPPFDYIIGTDVVY 155 (205)
Q Consensus 130 ~dw~~~~~~~-------~~~~~fD~Ii~~d~~y 155 (205)
.|..+.+... ..-++.|+++.+--+.
T Consensus 71 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 71 DDIADWDGAANLVDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 6766654321 1125789888765443
No 433
>PRK06720 hypothetical protein; Provisional
Probab=78.88 E-value=14 Score=27.70 Aligned_cols=79 Identities=23% Similarity=0.252 Sum_probs=44.4
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
.+++++|=-|++.|+ +...+++.|++|+.+|. ++.++.+...+...+ ....+...|..+.+..
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dl~~~~~v 80 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG-------------GEALFVSYDMEKQGDW 80 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHHHH
Confidence 467889999987764 23334456889999998 444443333332211 2344556666554321
Q ss_pred c-------cCCCCccEEEEcccc
Q 028673 139 K-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 139 ~-------~~~~~fD~Ii~~d~~ 154 (205)
. ..-++.|+++.+--+
T Consensus 81 ~~~v~~~~~~~G~iDilVnnAG~ 103 (169)
T PRK06720 81 QRVISITLNAFSRIDMLFQNAGL 103 (169)
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 1 112467888776433
No 434
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=78.84 E-value=0.45 Score=35.61 Aligned_cols=40 Identities=33% Similarity=0.422 Sum_probs=26.2
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEEcC-cchHHHH
Q 028673 62 KLKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEVLPLL 101 (205)
Q Consensus 62 ~~~~~~VLdlGcGt-Gl~sl~~a-~~g~~v~~~D~-~~~l~~~ 101 (205)
.++..+|+=+|.|. |.-+..++ .+|++|+..|. ++.++..
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~ 59 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQL 59 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhh
Confidence 44567999999985 66666555 45999999998 5544433
No 435
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=78.81 E-value=7.3 Score=30.37 Aligned_cols=76 Identities=24% Similarity=0.284 Sum_probs=44.2
Q ss_pred CCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 64 KGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
+++++|=.|+..| +|..++ +.|++|++++. .+..+.+...+... ..++.+...|..+.+..
T Consensus 2 ~~~~ilItGas~~-iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~d~~~~~~~ 67 (250)
T TIGR03206 2 KDKTAIVTGGGGG-IGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK-------------GGNAQAFACDITDRDSV 67 (250)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHHH
Confidence 5788999997544 344444 45889999988 44444444433322 12467777777665432
Q ss_pred cc-------CCCCccEEEEccc
Q 028673 139 KA-------VAPPFDYIIGTDV 153 (205)
Q Consensus 139 ~~-------~~~~fD~Ii~~d~ 153 (205)
.. ..++.|+++.+-.
T Consensus 68 ~~~~~~~~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 68 DTAVAAAEQALGPVDVLVNNAG 89 (250)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 11 1246787776653
No 436
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=78.80 E-value=10 Score=30.76 Aligned_cols=47 Identities=21% Similarity=0.300 Sum_probs=40.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHh
Q 028673 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN 108 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n 108 (205)
...+..|||--+|+|..++++.+.|-.+++.|+ ++.++.+.+.+...
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 457889999999999999999999999999999 78888887776654
No 437
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=78.69 E-value=13 Score=25.00 Aligned_cols=73 Identities=10% Similarity=0.093 Sum_probs=41.1
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCc
Q 028673 66 KRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF 145 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~f 145 (205)
++|| +-||+|..+-.++. .+++-++.++. .+++......+... ....+
T Consensus 4 ~~IL-l~C~~G~sSS~l~~---------------k~~~~~~~~gi-------------~~~v~a~~~~~~~~---~~~~~ 51 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVN---------------KMNKAAEEYGV-------------PVKIAAGSYGAAGE---KLDDA 51 (95)
T ss_pred cEEE-EECCCchhHHHHHH---------------HHHHHHHHCCC-------------cEEEEEecHHHHHh---hcCCC
Confidence 4666 77898865544432 34444455543 35555544443321 23468
Q ss_pred cEEEEcccccCCcChHhHHHHHHHhhCCCcE
Q 028673 146 DYIIGTDVVYAEHLLEPLLQTIFALSGPKTT 176 (205)
Q Consensus 146 D~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~ 176 (205)
|+|+.+ ......++.+.+...+-|.
T Consensus 52 Dvill~------pqi~~~~~~i~~~~~~~~i 76 (95)
T TIGR00853 52 DVVLLA------PQVAYMLPDLKKETDKKGI 76 (95)
T ss_pred CEEEEC------chHHHHHHHHHHHhhhcCC
Confidence 999988 4455566666666655443
No 438
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.67 E-value=9.7 Score=31.17 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=47.5
Q ss_pred CCCCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-c-chHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC
Q 028673 61 SKLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~ 135 (205)
..++++++|=.|++.|+- +..+++.|++|+.+|. + +..+.+...+... ..++.+...|..+.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~-------------g~~~~~~~~Dv~d~ 74 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAA-------------GAKAVAVAGDISQR 74 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhc-------------CCeEEEEeCCCCCH
Confidence 456789999999987642 3344566999999987 3 2333333333322 13466667666654
Q ss_pred CCccc------CCCCccEEEEcccc
Q 028673 136 DHIKA------VAPPFDYIIGTDVV 154 (205)
Q Consensus 136 ~~~~~------~~~~fD~Ii~~d~~ 154 (205)
+.... .-++.|+++.+--+
T Consensus 75 ~~~~~~~~~~~~~g~iD~li~nAG~ 99 (306)
T PRK07792 75 ATADELVATAVGLGGLDIVVNNAGI 99 (306)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 32210 02578988776433
No 439
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=78.49 E-value=27 Score=29.07 Aligned_cols=77 Identities=14% Similarity=0.021 Sum_probs=42.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHH----hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGMAL----LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a~----~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
...+++||=.|+ +|.+|..+++ .|.+|++++. ++-.+........ ..++.+...|..+..
T Consensus 7 ~~~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~Dl~~~~ 71 (353)
T PLN02896 7 ESATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE--------------GDRLRLFRADLQEEG 71 (353)
T ss_pred ccCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc--------------CCeEEEEECCCCCHH
Confidence 335778998885 6777776664 4889988876 3321111111110 134667776766654
Q ss_pred CcccCCCCccEEEEccc
Q 028673 137 HIKAVAPPFDYIIGTDV 153 (205)
Q Consensus 137 ~~~~~~~~fD~Ii~~d~ 153 (205)
.....-..+|.|+-...
T Consensus 72 ~~~~~~~~~d~Vih~A~ 88 (353)
T PLN02896 72 SFDEAVKGCDGVFHVAA 88 (353)
T ss_pred HHHHHHcCCCEEEECCc
Confidence 33222235787765543
No 440
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=78.49 E-value=7.7 Score=36.05 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=58.1
Q ss_pred CeEEEeCCCc-c-HHHHHHH-HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCC-----CCCCceEEEEeecCCCC
Q 028673 66 KRVIELGAGC-G-VAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS-----DLLGSIQAVELDWGNED 136 (205)
Q Consensus 66 ~~VLdlGcGt-G-l~sl~~a-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~-----~~~~~i~~~~~dw~~~~ 136 (205)
++|.=+|+|+ | -++..++ ..|..|+..|. ++.++.+..+++...........-+ ....++.+.. +. +
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~---~ 385 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT-DY---R 385 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC-Ch---H
Confidence 5789999997 3 3344455 66999999999 7777777766655422111100000 0012233321 11 1
Q ss_pred CcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEE
Q 028673 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (205)
Q Consensus 137 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~ 177 (205)
.-...|+|+=+ +.-..+.-..+++.+.+.++|+..+
T Consensus 386 ----~~~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~il 421 (708)
T PRK11154 386 ----GFKHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIF 421 (708)
T ss_pred ----HhccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEE
Confidence 12357777765 3333444557888888888877554
No 441
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=78.26 E-value=9.3 Score=31.17 Aligned_cols=41 Identities=27% Similarity=0.182 Sum_probs=28.1
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHH
Q 028673 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVE 106 (205)
Q Consensus 66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~ 106 (205)
++|-=+|+|. | .++..++..|.+|++.|. ++.++.+++.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~ 48 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSIS 48 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 4677788885 3 444555566889999999 666666555544
No 442
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=78.18 E-value=14 Score=28.11 Aligned_cols=33 Identities=36% Similarity=0.545 Sum_probs=23.2
Q ss_pred CCCCCeEEEeCC-C-cc-HHHHHHHHhCCEEEEEcC
Q 028673 62 KLKGKRVIELGA-G-CG-VAGFGMALLGCNVITTDQ 94 (205)
Q Consensus 62 ~~~~~~VLdlGc-G-tG-l~sl~~a~~g~~v~~~D~ 94 (205)
++++++++=+|+ | .| .....+++.|++|+.++.
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R 60 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGR 60 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 557889999996 4 35 334445566888988876
No 443
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.08 E-value=16 Score=28.99 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=24.4
Q ss_pred CCCCeEEEeCCCc-c-HHHHHHHHhCC-EEEEEcCc
Q 028673 63 LKGKRVIELGAGC-G-VAGFGMALLGC-NVITTDQI 95 (205)
Q Consensus 63 ~~~~~VLdlGcGt-G-l~sl~~a~~g~-~v~~~D~~ 95 (205)
+++.+|+=+|||. | .+...+++.|. +++.+|..
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4678999999983 5 44556677776 59999973
No 444
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=78.01 E-value=15 Score=28.92 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=46.5
Q ss_pred CCCCCeEEEeCCCccHHHH---HHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 62 KLKGKRVIELGAGCGVAGF---GMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl---~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
.+++++||=.|++.|+-.- .++..|++|+.++. ++.++.+...+..- ..++.+...|..+.+.
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~ 74 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL-------------GGQAFACRCDITSEQE 74 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHH
Confidence 4568999999987664322 23445889988887 55444443333221 1245666777766543
Q ss_pred cc-------cCCCCccEEEEcccc
Q 028673 138 IK-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 138 ~~-------~~~~~fD~Ii~~d~~ 154 (205)
.. ...+++|.++.+--+
T Consensus 75 i~~~~~~~~~~~~~~d~li~~ag~ 98 (255)
T PRK06113 75 LSALADFALSKLGKVDILVNNAGG 98 (255)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 21 112468888776543
No 445
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=77.96 E-value=11 Score=30.79 Aligned_cols=76 Identities=16% Similarity=0.094 Sum_probs=41.7
Q ss_pred CCCeEEEeCCCccHHHHHHHH----hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 64 KGKRVIELGAGCGVAGFGMAL----LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~----~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
++++||=.|+ +|.+|..+++ .|.+|++++. +.............. ..+++++...|..+....
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Dl~~~~~~ 70 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDG-----------AKERLHLFKANLLEEGSF 70 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccC-----------CCCceEEEeccccCcchH
Confidence 4678888885 6777776664 3888888876 332111111111110 013567777777765433
Q ss_pred ccCCCCccEEEEc
Q 028673 139 KAVAPPFDYIIGT 151 (205)
Q Consensus 139 ~~~~~~fD~Ii~~ 151 (205)
...-..+|.|+-.
T Consensus 71 ~~~~~~~d~Vih~ 83 (322)
T PLN02662 71 DSVVDGCEGVFHT 83 (322)
T ss_pred HHHHcCCCEEEEe
Confidence 2222357877654
No 446
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=77.93 E-value=27 Score=28.38 Aligned_cols=87 Identities=23% Similarity=0.272 Sum_probs=48.8
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 63 ~~~~~VLdlGcGt-Gl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
.++.+||=.|+|. |...+.+++ +|++|++++. ++..+.+++ .+. .. ..++...
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~---------------~~-~~~~~~~---- 209 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGV---------------ET-VLPDEAE---- 209 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCC---------------cE-EeCcccc----
Confidence 3577888888653 444444443 4888888887 555555543 221 00 0111111
Q ss_pred cCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEE
Q 028673 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILV 179 (205)
Q Consensus 140 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i 179 (205)
.....+|+++-+ . .-...+....+.++++|.+++
T Consensus 210 ~~~~~~d~vid~--~----g~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 210 SEGGGFDVVVEA--T----GSPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred ccCCCCCEEEEC--C----CChHHHHHHHHHhhcCCEEEE
Confidence 123468988864 1 113455666677888888876
No 447
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=77.68 E-value=4.6 Score=32.36 Aligned_cols=113 Identities=6% Similarity=-0.026 Sum_probs=60.4
Q ss_pred eCCCccHHHHHHH--HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCC-CCcccCCCCcc
Q 028673 71 LGAGCGVAGFGMA--LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-DHIKAVAPPFD 146 (205)
Q Consensus 71 lGcGtGl~sl~~a--~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~-~~~~~~~~~fD 146 (205)
+..-.|.+.++.. +..-+.+++|+ ++-.+.++.|+... .++.+...|--+. .....+..+=-
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~--------------~~v~v~~~DG~~~l~allPP~~rRg 127 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD--------------RRVRVHHRDGYEGLKALLPPPERRG 127 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT--------------S-EEEE-S-HHHHHHHH-S-TTS-E
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC--------------CccEEEeCchhhhhhhhCCCCCCCe
Confidence 3344565555554 44567999999 88778887776543 3567766332110 01112233445
Q ss_pred EEEEcccccCCcChHhHHHHHHHhhC--CCcEEEEEEeeccchhHHHHHHhhh
Q 028673 147 YIIGTDVVYAEHLLEPLLQTIFALSG--PKTTILVMFSLSMFSLTFFCWTRIT 197 (205)
Q Consensus 147 ~Ii~~d~~y~~~~~~~ll~~~~~~l~--~~g~~~i~~~~r~~~~~~~~~~~~~ 197 (205)
+|+.-+++-..+.++.+.+.+.+.++ +.|++.+=|+.........+.+++.
T Consensus 128 lVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~ 180 (245)
T PF04378_consen 128 LVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALK 180 (245)
T ss_dssp EEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHH
Confidence 77774455557788999999998876 8999999999776654333334443
No 448
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=77.59 E-value=6.2 Score=28.62 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=25.4
Q ss_pred EeCCCcc--HHHHHHH--Hh--CCEEEEEcC-cchHHHHHHH--HHHh
Q 028673 70 ELGAGCG--VAGFGMA--LL--GCNVITTDQ-IEVLPLLKRN--VEWN 108 (205)
Q Consensus 70 dlGcGtG--l~sl~~a--~~--g~~v~~~D~-~~~l~~~~~n--~~~n 108 (205)
|+||..| .....+. .. +.+|+++|- |..++.++.| +..|
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 4434332 22 457999999 8888999999 6665
No 449
>PRK06940 short chain dehydrogenase; Provisional
Probab=77.53 E-value=29 Score=27.79 Aligned_cols=76 Identities=24% Similarity=0.278 Sum_probs=42.9
Q ss_pred CCeEEEeCCCccHHHHHHHH---hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc-
Q 028673 65 GKRVIELGAGCGVAGFGMAL---LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK- 139 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a~---~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~- 139 (205)
++.+|=-|+| | +|..+++ .|++|+++|. ++.++.+...+... ..++.+...|..+.+...
T Consensus 2 ~k~~lItGa~-g-IG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dv~d~~~i~~ 66 (275)
T PRK06940 2 KEVVVVIGAG-G-IGQAIARRVGAGKKVLLADYNEENLEAAAKTLREA-------------GFDVSTQEVDVSSRESVKA 66 (275)
T ss_pred CCEEEEECCC-h-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEEeecCCHHHHHH
Confidence 3456666764 4 5655553 3788999988 54444333333222 124667777777654321
Q ss_pred -----cCCCCccEEEEccccc
Q 028673 140 -----AVAPPFDYIIGTDVVY 155 (205)
Q Consensus 140 -----~~~~~fD~Ii~~d~~y 155 (205)
...+++|+++.+--+.
T Consensus 67 ~~~~~~~~g~id~li~nAG~~ 87 (275)
T PRK06940 67 LAATAQTLGPVTGLVHTAGVS 87 (275)
T ss_pred HHHHHHhcCCCCEEEECCCcC
Confidence 1125789988765443
No 450
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=77.34 E-value=5 Score=33.78 Aligned_cols=41 Identities=34% Similarity=0.428 Sum_probs=32.0
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHHH
Q 028673 63 LKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKR 103 (205)
Q Consensus 63 ~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~~ 103 (205)
.+|.+|.=+|||- |+.++.-|+. |+ +++++|+ ++-++.+++
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 3578999999985 9999988875 66 4999999 666666554
No 451
>PRK06138 short chain dehydrogenase; Provisional
Probab=77.05 E-value=7.7 Score=30.26 Aligned_cols=77 Identities=25% Similarity=0.341 Sum_probs=45.3
Q ss_pred CCCCeEEEeCCCccHHHHH----HHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~----~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
++++++|=.||..|+ |.. +++.|++|++++. ++..+.....+. . ..++.+...|..+.+.
T Consensus 3 ~~~k~~lItG~sg~i-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~-------------~~~~~~~~~D~~~~~~ 67 (252)
T PRK06138 3 LAGRVAIVTGAGSGI-GRATAKLFAREGARVVVADRDAEAAERVAAAIA-A-------------GGRAFARQGDVGSAEA 67 (252)
T ss_pred CCCcEEEEeCCCchH-HHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-c-------------CCeEEEEEcCCCCHHH
Confidence 367899999986543 333 3445889999987 443433333332 1 1346777777776543
Q ss_pred ccc-------CCCCccEEEEcccc
Q 028673 138 IKA-------VAPPFDYIIGTDVV 154 (205)
Q Consensus 138 ~~~-------~~~~fD~Ii~~d~~ 154 (205)
... ..+++|.|+.+.-.
T Consensus 68 ~~~~~~~i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 68 VEALVDFVAARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 211 12478988766543
No 452
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.96 E-value=14 Score=28.73 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=43.0
Q ss_pred CCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
++++++|=.|++.|+ |..+ ++.|++|+.+|. ++-++.+...+...+ .++.....|..+.+.
T Consensus 3 ~~~~~~lItG~~g~i-G~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~ 68 (253)
T PRK08217 3 LKDKVIVITGGAQGL-GRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG-------------TEVRGYAANVTDEED 68 (253)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEcCCCCHHH
Confidence 367899999975443 4433 345889999998 443443333333221 245566666554332
Q ss_pred cc-------cCCCCccEEEEccc
Q 028673 138 IK-------AVAPPFDYIIGTDV 153 (205)
Q Consensus 138 ~~-------~~~~~fD~Ii~~d~ 153 (205)
.. ...+++|.|+.+.-
T Consensus 69 ~~~~~~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 69 VEATFAQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 11 11246898887643
No 453
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=76.77 E-value=9.1 Score=31.62 Aligned_cols=41 Identities=34% Similarity=0.376 Sum_probs=27.4
Q ss_pred CCCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEEcC-cchHHHHH
Q 028673 62 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLK 102 (205)
Q Consensus 62 ~~~~~~VLdlGc-G-tGl~sl~~a~-~g~~v~~~D~-~~~l~~~~ 102 (205)
..+|.+||=.|+ | .|...+.+|+ +|++|++++. ++-.+.++
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~ 193 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLK 193 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 346789999987 3 4666666665 4889888876 54444444
No 454
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.75 E-value=15 Score=29.10 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=23.7
Q ss_pred CCCCCeEEEeCCCcc-HHHHHH----HHhCCEEEEEcC
Q 028673 62 KLKGKRVIELGAGCG-VAGFGM----ALLGCNVITTDQ 94 (205)
Q Consensus 62 ~~~~~~VLdlGcGtG-l~sl~~----a~~g~~v~~~D~ 94 (205)
..+++++|=.|+++| -+|..+ ++.|++|+.++.
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r 44 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYL 44 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 457899999998752 334444 456899988887
No 455
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=76.72 E-value=22 Score=29.01 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=40.5
Q ss_pred ccHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEEcCcc
Q 028673 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE 96 (205)
Q Consensus 40 ~~~~~La~~l~~~~~~~~~~~~~~~~~~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~ 96 (205)
.+++.|-+.+.............-+|....|||+-.|-..-.+.+++-.|+++|.-.
T Consensus 187 RStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ 243 (358)
T COG2933 187 RSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP 243 (358)
T ss_pred hhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhcceEEEEeccch
Confidence 345666665554332222222344678999999999999999999999999999843
No 456
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=76.62 E-value=30 Score=28.71 Aligned_cols=98 Identities=14% Similarity=0.178 Sum_probs=50.1
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEE--EeecCCCCCcccC
Q 028673 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV--ELDWGNEDHIKAV 141 (205)
Q Consensus 66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~--~~dw~~~~~~~~~ 141 (205)
.+|.=+|+|. | .++..+++.|.+|+++|.++..+. +..++...... ........ .+...... ..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~----~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~---~~ 70 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDE----LRAHGLTLTDY-----RGRDVRVPPSAIAFSTDP---AA 70 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHH----HHhcCceeecC-----CCcceecccceeEeccCh---hh
Confidence 3577788885 3 566667777889999998432222 22232211000 00000000 00001111 11
Q ss_pred CCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEE
Q 028673 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 178 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~ 178 (205)
...+|+|+.+-..+ ....+++.+...++++..++
T Consensus 71 ~~~~D~vil~vk~~---~~~~~~~~l~~~~~~~~iii 104 (341)
T PRK08229 71 LATADLVLVTVKSA---ATADAAAALAGHARPGAVVV 104 (341)
T ss_pred ccCCCEEEEEecCc---chHHHHHHHHhhCCCCCEEE
Confidence 34789998763323 34677778877777766544
No 457
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=76.59 E-value=18 Score=29.82 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=26.2
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHHh-CCEEEEEcC-cchHHHH
Q 028673 63 LKGKRVIELGAGC-GVAGFGMALL-GCNVITTDQ-IEVLPLL 101 (205)
Q Consensus 63 ~~~~~VLdlGcGt-Gl~sl~~a~~-g~~v~~~D~-~~~l~~~ 101 (205)
..+.+||=.|||. |...+.+++. |++|++++. ++-++.+
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~ 203 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLA 203 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHH
Confidence 3577899999764 6665555654 888888887 4444444
No 458
>PRK12939 short chain dehydrogenase; Provisional
Probab=76.57 E-value=14 Score=28.73 Aligned_cols=77 Identities=22% Similarity=0.251 Sum_probs=44.6
Q ss_pred CCCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
..+++++|=.|++ |.+|..++ +.|++|++++. ++.++.....++.. ..++.+...|..+.+
T Consensus 4 ~~~~~~vlItGa~-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~ 69 (250)
T PRK12939 4 NLAGKRALVTGAA-RGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA-------------GGRAHAIAADLADPA 69 (250)
T ss_pred CCCCCEEEEeCCC-ChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHH
Confidence 3467889988874 44455544 45889988887 44444333333221 135677777776654
Q ss_pred Cccc-------CCCCccEEEEcc
Q 028673 137 HIKA-------VAPPFDYIIGTD 152 (205)
Q Consensus 137 ~~~~-------~~~~fD~Ii~~d 152 (205)
.... .-+++|.|+.+-
T Consensus 70 ~~~~~~~~~~~~~~~id~vi~~a 92 (250)
T PRK12939 70 SVQRFFDAAAAALGGLDGLVNNA 92 (250)
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 3211 114689887664
No 459
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=76.42 E-value=6.3 Score=32.17 Aligned_cols=95 Identities=19% Similarity=0.156 Sum_probs=50.7
Q ss_pred CCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 63 LKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 63 ~~~~~VLdlGc-G-tGl~sl~~a~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
.+|.+||=.|+ | .|...+.+|+ .|++|++++- ++-.+.+++ .+.. .-+.....+|.+.- .
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~-----------~vi~~~~~~~~~~v-~ 205 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD-----------AVFNYKTVSLEEAL-K 205 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC-----------EEEeCCCccHHHHH-H
Confidence 36788988885 3 4666666665 4888888876 544444433 2210 00111011111000 0
Q ss_pred ccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
......+|+|+-+ +- ...+....+.++++|+++..
T Consensus 206 ~~~~~gvd~vld~--~g-----~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 206 EAAPDGIDCYFDN--VG-----GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred HHCCCCcEEEEEC--CC-----HHHHHHHHHhhccCCEEEEE
Confidence 0112458888743 22 24567777888999998754
No 460
>PRK06128 oxidoreductase; Provisional
Probab=76.41 E-value=39 Score=27.43 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=43.3
Q ss_pred CCCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cch--HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEV--LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 134 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~--l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~ 134 (205)
.+++++||=.|+..|+ |..+ ++.|++|+.+.. .+. .+.....++.. ..++.+...|..+
T Consensus 52 ~l~~k~vlITGas~gI-G~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~ 117 (300)
T PRK06128 52 RLQGRKALITGADSGI-GRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAE-------------GRKAVALPGDLKD 117 (300)
T ss_pred ccCCCEEEEecCCCcH-HHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHc-------------CCeEEEEecCCCC
Confidence 3567899999976553 3333 455889888765 321 22222222221 1245666767665
Q ss_pred CCCcc-------cCCCCccEEEEcccc
Q 028673 135 EDHIK-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 135 ~~~~~-------~~~~~fD~Ii~~d~~ 154 (205)
.+... ..-++.|++|.+--+
T Consensus 118 ~~~v~~~~~~~~~~~g~iD~lV~nAg~ 144 (300)
T PRK06128 118 EAFCRQLVERAVKELGGLDILVNIAGK 144 (300)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 43221 112468998876543
No 461
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=76.29 E-value=17 Score=28.35 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=45.1
Q ss_pred CCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
+++++||=.|++.|+ |..++ +.|++|++++.... +.+...+... ..++.+...|..+.+..
T Consensus 3 ~~~k~vlItGas~gI-G~~ia~~l~~~G~~vi~~~r~~~-~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~ 67 (248)
T TIGR01832 3 LEGKVALVTGANTGL-GQGIAVGLAEAGADIVGAGRSEP-SETQQQVEAL-------------GRRFLSLTADLSDIEAI 67 (248)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHhc-------------CCceEEEECCCCCHHHH
Confidence 478899999997653 44443 45889999987331 2222222221 13467777777765432
Q ss_pred c-------cCCCCccEEEEcccc
Q 028673 139 K-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 139 ~-------~~~~~fD~Ii~~d~~ 154 (205)
. ...+++|.++.+--+
T Consensus 68 ~~~~~~~~~~~~~~d~li~~ag~ 90 (248)
T TIGR01832 68 KALVDSAVEEFGHIDILVNNAGI 90 (248)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 1 112468988876543
No 462
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=76.28 E-value=10 Score=29.22 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=28.6
Q ss_pred CCCCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHH
Q 028673 61 SKLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLK 102 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~ 102 (205)
..++|++|+=+|.|. +|..+ .+.|++|+++|. ++.++.+.
T Consensus 24 ~~l~gk~v~I~G~G~--vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~ 68 (200)
T cd01075 24 DSLEGKTVAVQGLGK--VGYKLAEHLLEEGAKLIVADINEEAVARAA 68 (200)
T ss_pred CCCCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 467899999999983 44444 455899999999 55544443
No 463
>PRK13699 putative methylase; Provisional
Probab=76.09 E-value=6.3 Score=31.12 Aligned_cols=43 Identities=9% Similarity=0.286 Sum_probs=29.3
Q ss_pred CCCccEEEEcccccC------C---------cChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 142 APPFDYIIGTDVVYA------E---------HLLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 142 ~~~fD~Ii~~d~~y~------~---------~~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
++++|+|+..+++.. . +.....++.+.+.|||||.+++....+
T Consensus 18 d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~ 75 (227)
T PRK13699 18 DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN 75 (227)
T ss_pred ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc
Confidence 567888888666541 0 123467788899999999887654433
No 464
>PRK07831 short chain dehydrogenase; Provisional
Probab=76.04 E-value=15 Score=29.06 Aligned_cols=82 Identities=22% Similarity=0.238 Sum_probs=47.0
Q ss_pred CCCCCeEEEeCC-CccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 62 KLKGKRVIELGA-GCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 62 ~~~~~~VLdlGc-GtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
..+++++|=.|+ |.|+- ...++..|++|+++|. ++-++.....++... ...++.....|..+.+
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Dl~~~~ 82 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAEL-----------GLGRVEAVVCDVTSEA 82 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhc-----------CCceEEEEEccCCCHH
Confidence 446788999986 44542 3334456889999987 554544444443320 0124666777766543
Q ss_pred Ccc-------cCCCCccEEEEcccc
Q 028673 137 HIK-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 137 ~~~-------~~~~~fD~Ii~~d~~ 154 (205)
... ...++.|+++.+--+
T Consensus 83 ~~~~~~~~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 83 QVDALIDAAVERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 221 112478988877544
No 465
>PRK06500 short chain dehydrogenase; Provisional
Probab=76.03 E-value=30 Score=26.79 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=21.9
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC
Q 028673 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ 94 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~ 94 (205)
.++++||=.|++.|+- ...+++.|++|++++.
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r 38 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGR 38 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence 3578888888865532 2233456889999987
No 466
>PRK07904 short chain dehydrogenase; Provisional
Probab=75.86 E-value=12 Score=29.70 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=45.1
Q ss_pred CCCeEEEeCCCccHHHHHHH----HhC-CEEEEEcC-cch-HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 64 KGKRVIELGAGCGVAGFGMA----LLG-CNVITTDQ-IEV-LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a----~~g-~~v~~~D~-~~~-l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
.+++||=.||+.|+ |..++ +.| ++|++++. ++- ++.+.+.++..+ ..++.+..+|..+..
T Consensus 7 ~~~~vlItGas~gi-G~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~------------~~~v~~~~~D~~~~~ 73 (253)
T PRK07904 7 NPQTILLLGGTSEI-GLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG------------ASSVEVIDFDALDTD 73 (253)
T ss_pred CCcEEEEEcCCcHH-HHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC------------CCceEEEEecCCChH
Confidence 46789999997664 44443 344 78999987 442 554444444331 125777788877654
Q ss_pred Ccc------cCCCCccEEEEcc
Q 028673 137 HIK------AVAPPFDYIIGTD 152 (205)
Q Consensus 137 ~~~------~~~~~fD~Ii~~d 152 (205)
... ...++.|+++.+-
T Consensus 74 ~~~~~~~~~~~~g~id~li~~a 95 (253)
T PRK07904 74 SHPKVIDAAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHHHHHHHHhcCCCCEEEEee
Confidence 311 0125799887553
No 467
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=75.85 E-value=19 Score=24.54 Aligned_cols=90 Identities=16% Similarity=0.164 Sum_probs=46.9
Q ss_pred CCccHHHHHHHHh---CC-EEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc-CCCCcc
Q 028673 73 AGCGVAGFGMALL---GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFD 146 (205)
Q Consensus 73 cGtGl~sl~~a~~---g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~-~~~~fD 146 (205)
||.|..|..+++. +. +|+.+|. ++.++.++. . .+.+...|..+.+.+.. .-.+.+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~---------------~~~~i~gd~~~~~~l~~a~i~~a~ 64 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----E---------------GVEVIYGDATDPEVLERAGIEKAD 64 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----T---------------TSEEEES-TTSHHHHHHTTGGCES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----c---------------ccccccccchhhhHHhhcCccccC
Confidence 4555666666642 44 7999999 665554443 2 14666755555432221 234678
Q ss_pred EEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 147 ~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
.|++. .........+....+-+.|...++.....+
T Consensus 65 ~vv~~---~~~d~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 65 AVVIL---TDDDEENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp EEEEE---SSSHHHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred EEEEc---cCCHHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 77775 222222223333345566777766555433
No 468
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.79 E-value=12 Score=29.08 Aligned_cols=78 Identities=26% Similarity=0.316 Sum_probs=45.2
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
+++++||=.|+..|+- ...+++.|++|++++. ++-++.+...+..+ .++.+...|..+.+..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~~~ 68 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAG--------------GRAIAVAADVSDEADV 68 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC--------------CeEEEEECCCCCHHHH
Confidence 3577899898765432 2233456889999998 54444333333221 2466777776665433
Q ss_pred cc-------CCCCccEEEEcccc
Q 028673 139 KA-------VAPPFDYIIGTDVV 154 (205)
Q Consensus 139 ~~-------~~~~fD~Ii~~d~~ 154 (205)
.. ..+++|.|+.+.-.
T Consensus 69 ~~~~~~~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 69 EAAVAAALERFGSVDILVNNAGT 91 (251)
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 21 12468988876543
No 469
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=75.74 E-value=13 Score=30.99 Aligned_cols=41 Identities=37% Similarity=0.397 Sum_probs=29.3
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHHh-CCEEEEEcC-cchHHHHH
Q 028673 62 KLKGKRVIELGAGC-GVAGFGMALL-GCNVITTDQ-IEVLPLLK 102 (205)
Q Consensus 62 ~~~~~~VLdlGcGt-Gl~sl~~a~~-g~~v~~~D~-~~~l~~~~ 102 (205)
..++.+||=+|||. |...+.+|+. |++|+++|. ++-++.++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~ 207 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMK 207 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 34578999999975 7776666654 788999988 55455443
No 470
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=75.67 E-value=17 Score=28.27 Aligned_cols=44 Identities=27% Similarity=0.300 Sum_probs=28.6
Q ss_pred CCCCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHH
Q 028673 61 SKLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNV 105 (205)
Q Consensus 61 ~~~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~ 105 (205)
...++++||=.|+. |.+|..++ +.|++|+++|. ++.++.+...+
T Consensus 8 ~~~~~k~vlItG~~-g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l 56 (247)
T PRK08945 8 DLLKDRIILVTGAG-DGIGREAALTYARHGATVILLGRTEEKLEAVYDEI 56 (247)
T ss_pred cccCCCEEEEeCCC-chHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Confidence 45578899999964 44455444 45889999998 55444444433
No 471
>PRK09186 flagellin modification protein A; Provisional
Probab=75.39 E-value=9.9 Score=29.77 Aligned_cols=77 Identities=25% Similarity=0.253 Sum_probs=44.2
Q ss_pred CCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 64 KGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
++++||=.|++.| +|..++ +.|++|++++. ++.++.+...+.... ....+.+...|..+.+..
T Consensus 3 ~~k~vlItGas~g-iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~-----------~~~~~~~~~~Dl~d~~~~ 70 (256)
T PRK09186 3 KGKTILITGAGGL-IGSALVKAILEAGGIVIAADIDKEALNELLESLGKEF-----------KSKKLSLVELDITDQESL 70 (256)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhc-----------CCCceeEEEecCCCHHHH
Confidence 5788999998654 344433 45889999987 554444444432221 012345557777665432
Q ss_pred cc-------CCCCccEEEEcc
Q 028673 139 KA-------VAPPFDYIIGTD 152 (205)
Q Consensus 139 ~~-------~~~~fD~Ii~~d 152 (205)
.. .-++.|+++.+-
T Consensus 71 ~~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 71 EEFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHHHHHcCCccEEEECC
Confidence 11 124589888764
No 472
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=75.16 E-value=43 Score=30.65 Aligned_cols=34 Identities=9% Similarity=0.014 Sum_probs=23.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHH--HhCCE-EEEEcCc
Q 028673 62 KLKGKRVIELGAGCGVAGFGMA--LLGCN-VITTDQI 95 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a--~~g~~-v~~~D~~ 95 (205)
..+..+|+=+|.|....++..+ ..|.. +.++|.+
T Consensus 126 ~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D 162 (637)
T TIGR03693 126 LSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTD 162 (637)
T ss_pred hhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecc
Confidence 3367899999999865565554 44654 7777653
No 473
>PRK12937 short chain dehydrogenase; Provisional
Probab=75.01 E-value=36 Score=26.25 Aligned_cols=78 Identities=23% Similarity=0.225 Sum_probs=42.5
Q ss_pred CCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-c-chHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
+++++||=.|+..|+ |..+ ++.|++|+.+.. . ...+...+.+... ..++.+...|..+.+
T Consensus 3 ~~~~~vlItG~~~~i-G~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~ 68 (245)
T PRK12937 3 LSNKVAIVTGASRGI-GAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAA-------------GGRAIAVQADVADAA 68 (245)
T ss_pred CCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHH
Confidence 367889999986543 4433 456888877755 2 2223333333222 134667776766543
Q ss_pred Ccc-------cCCCCccEEEEcccc
Q 028673 137 HIK-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 137 ~~~-------~~~~~fD~Ii~~d~~ 154 (205)
... ...++.|+++.+--+
T Consensus 69 ~~~~~~~~~~~~~~~id~vi~~ag~ 93 (245)
T PRK12937 69 AVTRLFDAAETAFGRIDVLVNNAGV 93 (245)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 221 112468888776443
No 474
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.99 E-value=8.9 Score=31.84 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=49.4
Q ss_pred HHHHHHhCCEEEEEcC-cc-------hHHHHHHHHHHhhhhhccCCCC-----CCCCCceEEEEeecCCCCCcccCCCCc
Q 028673 79 GFGMALLGCNVITTDQ-IE-------VLPLLKRNVEWNTSRISQMNPG-----SDLLGSIQAVELDWGNEDHIKAVAPPF 145 (205)
Q Consensus 79 sl~~a~~g~~v~~~D~-~~-------~l~~~~~n~~~n~~~~~~~~~~-----~~~~~~i~~~~~dw~~~~~~~~~~~~f 145 (205)
+..++..|.+|+..|. ++ .++.++.++..+.........- .....++.+.. +.+ ....-..-
T Consensus 6 A~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----~~~-~~~a~~~a 80 (314)
T PRK08269 6 ALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA----RDG-AADALADA 80 (314)
T ss_pred HHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec----Ccc-hHHHhccC
Confidence 4566678999999999 64 3555666665432211100000 00112333321 000 00112357
Q ss_pred cEEEEcccccCCcChHhHHHHHHHhhCCCcEE
Q 028673 146 DYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (205)
Q Consensus 146 D~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~ 177 (205)
|+|+-+ +.-....-..++..+.+.++|+..+
T Consensus 81 D~ViEa-v~E~~~~K~~~f~~l~~~~~~~~il 111 (314)
T PRK08269 81 DLVFEA-VPEVLDAKREALRWLGRHVDADAII 111 (314)
T ss_pred CEEEEC-CcCCHHHHHHHHHHHHhhCCCCcEE
Confidence 888876 3333445557888888889888766
No 475
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=74.92 E-value=12 Score=25.70 Aligned_cols=84 Identities=8% Similarity=0.078 Sum_probs=45.8
Q ss_pred eEEEeCCCccHHHHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcccCCCCcc
Q 028673 67 RVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146 (205)
Q Consensus 67 ~VLdlGcGtGl~sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~~~~~fD 146 (205)
+|| +-||+|..+-.+++ .+++-++.++. .+++......+..... ....+|
T Consensus 3 kIL-lvCg~G~STSlla~---------------k~k~~~~e~gi-------------~~~i~a~~~~e~~~~~-~~~~~D 52 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAK---------------KTTEYLKEQGK-------------DIEVDAITATEGEKAI-AAAEYD 52 (104)
T ss_pred EEE-EECCCchHHHHHHH---------------HHHHHHHHCCC-------------ceEEEEecHHHHHHhh-ccCCCC
Confidence 444 67999975554443 33444555543 2455444333322110 134689
Q ss_pred EEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeeccc
Q 028673 147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLSMF 186 (205)
Q Consensus 147 ~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r~~ 186 (205)
+|+.+ ....-..+.+.+.+.+.+.-+...+.+.+
T Consensus 53 vIll~------PQi~~~~~~i~~~~~~~~ipv~~I~~~~Y 86 (104)
T PRK09590 53 LYLVS------PQTKMYFKQFEEAGAKVGKPVVQIPPQAY 86 (104)
T ss_pred EEEEC------hHHHHHHHHHHHHhhhcCCCEEEeCHHHc
Confidence 99988 45556667777777665554444444443
No 476
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.78 E-value=0.75 Score=34.21 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=32.7
Q ss_pred CCCCccEEEEcccccCC--cChHhHHHHHHHhhCCCcEEEEEEee
Q 028673 141 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILVMFSL 183 (205)
Q Consensus 141 ~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~i~~~~ 183 (205)
.+++.|+|++..++-|- ......++.+++.|+|||.+-++.|.
T Consensus 44 ~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 44 EDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred CCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 35688888888766543 23346788999999999999999763
No 477
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=74.75 E-value=8.5 Score=31.49 Aligned_cols=92 Identities=25% Similarity=0.314 Sum_probs=50.1
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC-
Q 028673 63 LKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH- 137 (205)
Q Consensus 63 ~~~~~VLdlGcGt-Gl~sl~~a~~-g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~- 137 (205)
.++.+||-.|+|. |...+.+++. |.+ |++++. ++..+.+++ .+. . .+... .+...
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~-------------~-~~~~~--~~~~~~ 217 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGA-------------T-ETVDP--SREDPE 217 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCC-------------e-EEecC--CCCCHH
Confidence 4677899998753 5555555544 766 888877 554444432 111 0 11110 11000
Q ss_pred --cccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEE
Q 028673 138 --IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVM 180 (205)
Q Consensus 138 --~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~ 180 (205)
.......+|+++.+ .. ....+....+.++++|+++..
T Consensus 218 ~~~~~~~~~vd~v~~~--~~----~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 218 AQKEDNPYGFDVVIEA--TG----VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred HHHHhcCCCCcEEEEC--CC----ChHHHHHHHHHHhcCCEEEEE
Confidence 01123568999864 11 235666677788888987765
No 478
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.46 E-value=17 Score=31.46 Aligned_cols=30 Identities=53% Similarity=0.906 Sum_probs=22.8
Q ss_pred CCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC
Q 028673 63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ 94 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~ 94 (205)
.++++|+=+|+|. .|+.+| ..|++|+++|.
T Consensus 3 ~~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~ 36 (450)
T PRK14106 3 LKGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDE 36 (450)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeC
Confidence 3678999999886 344443 55999999998
No 479
>PRK07576 short chain dehydrogenase; Provisional
Probab=74.28 E-value=18 Score=28.69 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=43.2
Q ss_pred CCCCeEEEeCCCccHHHHH----HHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~----~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
++++++|=.|++.| +|.. ++..|++|+++|. ++-++.....+... ..++.+...|..+.+.
T Consensus 7 ~~~k~ilItGasgg-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~ 72 (264)
T PRK07576 7 FAGKNVVVVGGTSG-INLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA-------------GPEGLGVSADVRDYAA 72 (264)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-------------CCceEEEECCCCCHHH
Confidence 46889999997444 3433 3456889999998 54333333322221 1235666777665432
Q ss_pred cc-------cCCCCccEEEEcc
Q 028673 138 IK-------AVAPPFDYIIGTD 152 (205)
Q Consensus 138 ~~-------~~~~~fD~Ii~~d 152 (205)
.. ...+++|.++.+-
T Consensus 73 i~~~~~~~~~~~~~iD~vi~~a 94 (264)
T PRK07576 73 VEAAFAQIADEFGPIDVLVSGA 94 (264)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 21 1124689988653
No 480
>PRK07102 short chain dehydrogenase; Provisional
Probab=74.25 E-value=15 Score=28.65 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=41.7
Q ss_pred CeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCccc
Q 028673 66 KRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (205)
Q Consensus 66 ~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~~ 140 (205)
++++=.|+.. -+|..++ +.|++|+++|. ++-.+....++.... ..++.+...|..+......
T Consensus 2 ~~vlItGas~-giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dl~~~~~~~~ 68 (243)
T PRK07102 2 KKILIIGATS-DIARACARRYAAAGARLYLAARDVERLERLADDLRARG------------AVAVSTHELDILDTASHAA 68 (243)
T ss_pred cEEEEEcCCc-HHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc------------CCeEEEEecCCCChHHHHH
Confidence 4688888654 3444443 45889999998 543333333333221 2357777777776543211
Q ss_pred ----CCCCccEEEEcc
Q 028673 141 ----VAPPFDYIIGTD 152 (205)
Q Consensus 141 ----~~~~fD~Ii~~d 152 (205)
...++|+++.+-
T Consensus 69 ~~~~~~~~~d~vv~~a 84 (243)
T PRK07102 69 FLDSLPALPDIVLIAV 84 (243)
T ss_pred HHHHHhhcCCEEEECC
Confidence 123578888653
No 481
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=74.24 E-value=15 Score=30.10 Aligned_cols=77 Identities=14% Similarity=0.076 Sum_probs=41.2
Q ss_pred CCCeEEEeCCCccHHHHHHHH----hCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCc
Q 028673 64 KGKRVIELGAGCGVAGFGMAL----LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~----~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~ 138 (205)
.+++||=.|+ +|.+|..+++ .|++|++++. ++..+.........+ ...++.+...|..+.+..
T Consensus 4 ~~k~vlVtG~-~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----------~~~~~~~~~~D~~d~~~~ 71 (325)
T PLN02989 4 GGKVVCVTGA-SGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDG-----------AKERLKLFKADLLDEGSF 71 (325)
T ss_pred CCCEEEEECC-chHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccC-----------CCCceEEEeCCCCCchHH
Confidence 3678998884 5666666654 4888887765 332222211111110 013466777676665433
Q ss_pred ccCCCCccEEEEcc
Q 028673 139 KAVAPPFDYIIGTD 152 (205)
Q Consensus 139 ~~~~~~fD~Ii~~d 152 (205)
...-..+|+|+-+-
T Consensus 72 ~~~~~~~d~vih~A 85 (325)
T PLN02989 72 ELAIDGCETVFHTA 85 (325)
T ss_pred HHHHcCCCEEEEeC
Confidence 22223578876554
No 482
>PRK08303 short chain dehydrogenase; Provisional
Probab=74.20 E-value=20 Score=29.38 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=23.8
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcC
Q 028673 62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ 94 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~ 94 (205)
.++++++|=.|++.|+- +..+++.|++|++++.
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r 40 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGR 40 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEec
Confidence 45789999999987742 3333456899988876
No 483
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=74.20 E-value=16 Score=28.70 Aligned_cols=78 Identities=23% Similarity=0.326 Sum_probs=45.0
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEEcCcchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~---sl~~a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
++++++|=.|++.|+- +..+++.|++|++++..+. +.+...++.. ..++.+...|..+.+...
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~-~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~ 71 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA-PETQAQVEAL-------------GRKFHFITADLIQQKDID 71 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH-HHHHHHHHHc-------------CCeEEEEEeCCCCHHHHH
Confidence 4689999999877642 3334456899988876321 2222222221 134666777776654321
Q ss_pred -------cCCCCccEEEEcccc
Q 028673 140 -------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 140 -------~~~~~fD~Ii~~d~~ 154 (205)
...+++|+++.+--+
T Consensus 72 ~~~~~~~~~~g~iD~lv~~ag~ 93 (251)
T PRK12481 72 SIVSQAVEVMGHIDILINNAGI 93 (251)
T ss_pred HHHHHHHHHcCCCCEEEECCCc
Confidence 112468988876543
No 484
>PRK08643 acetoin reductase; Validated
Probab=74.19 E-value=18 Score=28.39 Aligned_cols=76 Identities=22% Similarity=0.301 Sum_probs=44.2
Q ss_pred CCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 65 GKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
++++|=.|+..|+ |..+ ++.|++|++++. ++..+.+...+...+ .++.+...|..+.+...
T Consensus 2 ~k~~lItGas~gi-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~~~~~ 67 (256)
T PRK08643 2 SKVALVTGAGQGI-GFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG-------------GKAIAVKADVSDRDQVF 67 (256)
T ss_pred CCEEEEECCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEECCCCCHHHHH
Confidence 5678888876553 4433 455889999998 554444444443321 24566777776654321
Q ss_pred -------cCCCCccEEEEcccc
Q 028673 140 -------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 140 -------~~~~~fD~Ii~~d~~ 154 (205)
...++.|.++.+--+
T Consensus 68 ~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 68 AAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 112468988776533
No 485
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=73.80 E-value=21 Score=30.18 Aligned_cols=34 Identities=35% Similarity=0.479 Sum_probs=23.3
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cc
Q 028673 63 LKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IE 96 (205)
Q Consensus 63 ~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~ 96 (205)
..+.+||=.|+|. |...+.+|+. |+ +|++++. ++
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~ 239 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEE 239 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH
Confidence 3567887778864 6666655654 77 6999987 44
No 486
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=73.65 E-value=3 Score=34.59 Aligned_cols=43 Identities=19% Similarity=0.161 Sum_probs=33.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEEcC-cchHHHHHHHHH
Q 028673 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVE 106 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~~--g~~v~~~D~-~~~l~~~~~n~~ 106 (205)
++...+|.--|.|--+..+... +.+|+++|. +++++.+++++.
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~ 65 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK 65 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh
Confidence 5678999999998888877765 568999999 889988877655
No 487
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=73.61 E-value=13 Score=30.93 Aligned_cols=43 Identities=35% Similarity=0.387 Sum_probs=31.5
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEEcC-cchHHHHHHHHHHh
Q 028673 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN 108 (205)
Q Consensus 66 ~~VLdlGcGt-G-l~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n 108 (205)
++|-=+|+|+ | -++..+|..|..|+..|. +++++.++..+..+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~ 49 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKN 49 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHH
Confidence 4678899987 3 344555556689999999 77888777776655
No 488
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=73.61 E-value=7.7 Score=32.64 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=28.7
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEEcC-cchHHHHH
Q 028673 63 LKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLK 102 (205)
Q Consensus 63 ~~~~~VLdlGcGt-Gl~sl~~a~~-g~-~v~~~D~-~~~l~~~~ 102 (205)
..+.+||=.|||. |.+++.+|+. |+ +|+++|. ++-++.++
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~ 227 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAK 227 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 4578899999875 7777766754 77 6999998 55555443
No 489
>PRK06197 short chain dehydrogenase; Provisional
Probab=73.52 E-value=13 Score=30.23 Aligned_cols=81 Identities=21% Similarity=0.297 Sum_probs=45.5
Q ss_pred CCCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
+.++++||=.|+..|+ |..++ +.|++|++++. ++..+.+...+.... ...++.+...|..+.+
T Consensus 13 ~~~~k~vlItGas~gI-G~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~-----------~~~~~~~~~~Dl~d~~ 80 (306)
T PRK06197 13 DQSGRVAVVTGANTGL-GYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT-----------PGADVTLQELDLTSLA 80 (306)
T ss_pred cCCCCEEEEcCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCHH
Confidence 4578899988875543 44444 45889888876 443333333332210 0134667777766654
Q ss_pred Ccc-------cCCCCccEEEEcccc
Q 028673 137 HIK-------AVAPPFDYIIGTDVV 154 (205)
Q Consensus 137 ~~~-------~~~~~fD~Ii~~d~~ 154 (205)
... ...+++|+++.+--+
T Consensus 81 ~v~~~~~~~~~~~~~iD~li~nAg~ 105 (306)
T PRK06197 81 SVRAAADALRAAYPRIDLLINNAGV 105 (306)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCcc
Confidence 321 112468988776543
No 490
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=73.34 E-value=19 Score=29.13 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=22.5
Q ss_pred eEEEeCCCc--cHHHHHHHHhCCEEEEEcC-cchHHHH
Q 028673 67 RVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLL 101 (205)
Q Consensus 67 ~VLdlGcGt--Gl~sl~~a~~g~~v~~~D~-~~~l~~~ 101 (205)
+|.=+|+|. |.++..+++.|.+|++.|. ++.++.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a 39 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERA 39 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 355567764 3455555566889999998 5554444
No 491
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=73.05 E-value=15 Score=24.76 Aligned_cols=51 Identities=4% Similarity=-0.017 Sum_probs=28.8
Q ss_pred eEEEEeecCCCCCcccCCCCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEEeec
Q 028673 125 IQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMFSLS 184 (205)
Q Consensus 125 i~~~~~dw~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~~~r 184 (205)
+++...+..+.. .....+|+|+.+ ......++.+.+...+.+.-+...+.+
T Consensus 30 ~~v~~~~~~~~~---~~~~~~Diil~~------Pqv~~~~~~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 30 AEIEAVPESELE---EYIDDADVVLLG------PQVRYMLDEVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred eEEEEecHHHHH---HhcCCCCEEEEC------hhHHHHHHHHHHHhccCCCcEEEcChH
Confidence 555554444332 123578999998 456667777776655444444443333
No 492
>PRK05875 short chain dehydrogenase; Provisional
Probab=72.97 E-value=13 Score=29.53 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=44.3
Q ss_pred CCCCeEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCC
Q 028673 63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (205)
Q Consensus 63 ~~~~~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~ 137 (205)
.+++++|=.|++.| +|..+ ++.|++|++++. ++..+.....+.... ...++.+...|..+.+.
T Consensus 5 ~~~k~vlItGasg~-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----------~~~~~~~~~~Dl~~~~~ 72 (276)
T PRK05875 5 FQDRTYLVTGGGSG-IGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALK-----------GAGAVRYEPADVTDEDQ 72 (276)
T ss_pred CCCCEEEEECCCcH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcc-----------CCCceEEEEcCCCCHHH
Confidence 46789999997654 34444 345889999987 443333333222110 01356677777766543
Q ss_pred ccc-------CCCCccEEEEcc
Q 028673 138 IKA-------VAPPFDYIIGTD 152 (205)
Q Consensus 138 ~~~-------~~~~fD~Ii~~d 152 (205)
... ..+++|+++.+-
T Consensus 73 ~~~~~~~~~~~~~~~d~li~~a 94 (276)
T PRK05875 73 VARAVDAATAWHGRLHGVVHCA 94 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 211 123689888654
No 493
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.93 E-value=18 Score=28.63 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=28.9
Q ss_pred CCCeEEEeCCCccHHHHHHHH----hCCEEEEEcC--cchHHHH
Q 028673 64 KGKRVIELGAGCGVAGFGMAL----LGCNVITTDQ--IEVLPLL 101 (205)
Q Consensus 64 ~~~~VLdlGcGtGl~sl~~a~----~g~~v~~~D~--~~~l~~~ 101 (205)
..+.||=-||..|-+|-++++ .|++|+++-. +.|-+++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~ 49 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLA 49 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHH
Confidence 457899999999988887775 4889999976 3454444
No 494
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=72.83 E-value=12 Score=30.78 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=21.2
Q ss_pred CCccEEEEcccccCCcChHhHHHHHHHhhCCCcEEEEEE
Q 028673 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILVMF 181 (205)
Q Consensus 143 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~i~~ 181 (205)
..+|+|+-+ . .-...+..+.+.++++|+++...
T Consensus 229 ~~~d~vld~--~----g~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 229 EGVDVFLEM--S----GAPKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred CCCCEEEEC--C----CCHHHHHHHHHhhcCCCEEEEEc
Confidence 468888764 1 11345666677788888876653
No 495
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=72.40 E-value=12 Score=29.62 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=41.1
Q ss_pred eEEEeCCCccH---HHHHHHHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc---
Q 028673 67 RVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK--- 139 (205)
Q Consensus 67 ~VLdlGcGtGl---~sl~~a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~--- 139 (205)
+||=.|++.|+ ++..+++.|++|++++. ++.++.+...+... .++.+...|..+.+...
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~Dv~d~~~~~~~~ 67 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY--------------GEVYAVKADLSDKDDLKNLV 67 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--------------CCceEEEcCCCCHHHHHHHH
Confidence 57778877653 23334456899999988 55444444433322 23566676766543221
Q ss_pred ----cCCCCccEEEEcc
Q 028673 140 ----AVAPPFDYIIGTD 152 (205)
Q Consensus 140 ----~~~~~fD~Ii~~d 152 (205)
...+++|+++.+-
T Consensus 68 ~~~~~~~g~id~li~na 84 (259)
T PRK08340 68 KEAWELLGGIDALVWNA 84 (259)
T ss_pred HHHHHhcCCCCEEEECC
Confidence 1124789887653
No 496
>PRK08251 short chain dehydrogenase; Provisional
Probab=72.38 E-value=24 Score=27.46 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=44.2
Q ss_pred CCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc
Q 028673 65 GKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (205)
Q Consensus 65 ~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~ 139 (205)
++++|=.|+..| +|..++ +.|++|++++. ++.++.+...+.... ...++.+...|..+.+...
T Consensus 2 ~k~vlItGas~g-iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-----------~~~~~~~~~~D~~~~~~~~ 69 (248)
T PRK08251 2 RQKILITGASSG-LGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY-----------PGIKVAVAALDVNDHDQVF 69 (248)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC-----------CCceEEEEEcCCCCHHHHH
Confidence 467888886544 454444 45888988887 555544444333221 1235677787877664321
Q ss_pred -------cCCCCccEEEEcc
Q 028673 140 -------AVAPPFDYIIGTD 152 (205)
Q Consensus 140 -------~~~~~fD~Ii~~d 152 (205)
...++.|.++.+-
T Consensus 70 ~~~~~~~~~~~~id~vi~~a 89 (248)
T PRK08251 70 EVFAEFRDELGGLDRVIVNA 89 (248)
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 1124688887764
No 497
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=72.37 E-value=42 Score=25.84 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=25.9
Q ss_pred CCCCCeEEEeCCCc-c-HHHHHHHHhCC-EEEEEcCc
Q 028673 62 KLKGKRVIELGAGC-G-VAGFGMALLGC-NVITTDQI 95 (205)
Q Consensus 62 ~~~~~~VLdlGcGt-G-l~sl~~a~~g~-~v~~~D~~ 95 (205)
.++.++|+=+|||. | -++..+++.|. +++.+|..
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 44678999999984 5 45667777887 59999874
No 498
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=72.24 E-value=33 Score=27.87 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=25.2
Q ss_pred CCCCCeEEEeCCCc-c-HHHHHHHHhC-CEEEEEcCc
Q 028673 62 KLKGKRVIELGAGC-G-VAGFGMALLG-CNVITTDQI 95 (205)
Q Consensus 62 ~~~~~~VLdlGcGt-G-l~sl~~a~~g-~~v~~~D~~ 95 (205)
.+++.+|+=+|||- | ..+..+++.| .+++.+|..
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 44778999999984 5 4455667778 469999873
No 499
>PRK05650 short chain dehydrogenase; Provisional
Probab=72.14 E-value=12 Score=29.80 Aligned_cols=74 Identities=20% Similarity=0.099 Sum_probs=41.9
Q ss_pred eEEEeCCCccHHHHHH----HHhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCCCcc--
Q 028673 67 RVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-- 139 (205)
Q Consensus 67 ~VLdlGcGtGl~sl~~----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~~~~-- 139 (205)
+||=.|+..|+ |..+ ++.|.+|++++. ++-++.+...+... ..++.+...|..+.....
T Consensus 2 ~vlVtGasggI-G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~~~~~ 67 (270)
T PRK05650 2 RVMITGAASGL-GRAIALRWAREGWRLALADVNEEGGEETLKLLREA-------------GGDGFYQRCDVRDYSQLTAL 67 (270)
T ss_pred EEEEecCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEccCCCHHHHHHH
Confidence 57777765543 4433 455889999987 44444443333322 134666777776654321
Q ss_pred -----cCCCCccEEEEcccc
Q 028673 140 -----AVAPPFDYIIGTDVV 154 (205)
Q Consensus 140 -----~~~~~fD~Ii~~d~~ 154 (205)
...+++|.+|.+--+
T Consensus 68 ~~~i~~~~~~id~lI~~ag~ 87 (270)
T PRK05650 68 AQACEEKWGGIDVIVNNAGV 87 (270)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 112468988876443
No 500
>PRK12829 short chain dehydrogenase; Provisional
Probab=71.93 E-value=11 Score=29.50 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=44.6
Q ss_pred CCCCCeEEEeCCCccHHHHHHH----HhCCEEEEEcC-cchHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeecCCCC
Q 028673 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (205)
Q Consensus 62 ~~~~~~VLdlGcGtGl~sl~~a----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~i~~~~~dw~~~~ 136 (205)
..+++++|=.|+..|+ |..++ +.|++|++++. ++..+........ .++.+...|..+..
T Consensus 8 ~~~~~~vlItGa~g~i-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~---------------~~~~~~~~D~~~~~ 71 (264)
T PRK12829 8 PLDGLRVLVTGGASGI-GRAIAEAFAEAGARVHVCDVSEAALAATAARLPG---------------AKVTATVADVADPA 71 (264)
T ss_pred ccCCCEEEEeCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---------------CceEEEEccCCCHH
Confidence 4578899999986543 44433 45889999998 4433332221110 13566777776654
Q ss_pred Cccc-------CCCCccEEEEcccc
Q 028673 137 HIKA-------VAPPFDYIIGTDVV 154 (205)
Q Consensus 137 ~~~~-------~~~~fD~Ii~~d~~ 154 (205)
.... ...++|.|+.+-..
T Consensus 72 ~~~~~~~~~~~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 72 QVERVFDTAVERFGGLDVLVNNAGI 96 (264)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 3211 12468998866443
Done!