BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028674
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54638|ARGE_DICDI Acetylornithine deacetylase OS=Dictyostelium discoideum GN=argE
PE=1 SV=2
Length = 447
Score = 209 bits (532), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 99/190 (52%), Positives = 125/190 (65%)
Query: 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCI 62
+L K LK ++ AVFI SEEN I G+GVDAL G +N K GP+YW+D+AD QP I
Sbjct: 149 QLATEKPALKHSIFAVFIVSEENDEIPGIGVDALDHSGKMNPCKNGPVYWVDSADSQPTI 208
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET 122
GTGG W L GK HS +P++ +N +EL EAL IQ RFY DF PHPKE Y F+
Sbjct: 209 GTGGAQTWNLTAHGKNMHSAMPYRTVNSVELVNEALAEIQRRFYIDFKPHPKEAEYKFDC 268
Query: 123 PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDT 182
STMKPT W G N IPGE T+ GD+RLTPFY++ ++ +++ Y+ DIN NI +L
Sbjct: 269 SSTMKPTLWKPIAGSYNTIPGESTICGDIRLTPFYDMKEMRAKVEGYIKDINANITELRN 328
Query: 183 RGPVSKYVLP 192
RGP SKY +P
Sbjct: 329 RGPYSKYDVP 338
>sp|B2SQY5|DAPE_XANOP Succinyl-diaminopimelate desuccinylase OS=Xanthomonas oryzae pv.
oryzae (strain PXO99A) GN=dapE PE=3 SV=1
Length = 376
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 24/172 (13%)
Query: 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC-------- 61
+ + +AV + S+E G +D + + L + +G + W T +
Sbjct: 119 RAHAGTLAVLLTSDEE----GDAIDGVRRVANLFRERGQAIDWCITGEPSSTERLGDLLR 174
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
+G G + L V G H PHKA NP+ LA AL + R + D GFE
Sbjct: 175 VGRRGSLSGTLTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFE 224
Query: 122 T--PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ P++++ + G N IPGE V+ ++R TP ++ + + +D
Sbjct: 225 SFPPTSLQVSNIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLETEITALLD 276
>sp|Q3BVJ3|DAPE_XANC5 Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris
pv. vesicatoria (strain 85-10) GN=dapE PE=3 SV=1
Length = 376
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 24/169 (14%)
Query: 13 STVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGT 64
S +AV + S+E G +D + + + + +G + W T + +G
Sbjct: 122 SGTLAVLLTSDEE----GDAIDGVRRVAEVFRERGQTIDWCITGEPSSTERLGDLLRVGR 177
Query: 65 GGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-- 122
G + L V G H PHKA NP+ LA AL + R + D GFE+
Sbjct: 178 RGSLSGTLTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFESFP 227
Query: 123 PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
P++++ + G N IPGE V+ ++R TP ++ + + +D
Sbjct: 228 PTSLQLSNIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLEAEITALLD 276
>sp|Q5H1C8|DAPE_XANOR Succinyl-diaminopimelate desuccinylase OS=Xanthomonas oryzae pv.
oryzae (strain KACC10331 / KXO85) GN=dapE PE=3 SV=2
Length = 376
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 24/172 (13%)
Query: 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC-------- 61
+ + +AV + S+E G +D + + L +G + W T +
Sbjct: 119 RAHAGTLAVLLTSDEE----GDAIDGVRRVANLFLERGQAIDWCITGEPSSTERLGDLLR 174
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
+G G + L V G H PHKA NP+ LA AL + R + D GFE
Sbjct: 175 VGRRGSLSGTLTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFE 224
Query: 122 T--PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ P++++ + G N IPGE V+ ++R TP ++ + + +D
Sbjct: 225 SFPPTSLQVSNIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLEAEITALLD 276
>sp|Q2P492|DAPE_XANOM Succinyl-diaminopimelate desuccinylase OS=Xanthomonas oryzae pv.
oryzae (strain MAFF 311018) GN=dapE PE=3 SV=1
Length = 376
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 24/172 (13%)
Query: 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC-------- 61
+ + +AV + S+E G +D + + L +G + W T +
Sbjct: 119 RAHAGTLAVLLTSDEE----GDAIDGVRRVANLFLERGQAIDWCITGEPSSTERLGDLLR 174
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
+G G + L V G H PHKA NP+ LA AL + R + D GFE
Sbjct: 175 VGRRGSLSGTLTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFE 224
Query: 122 T--PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ P++++ + G N IPGE V+ ++R TP ++ + + +D
Sbjct: 225 SFPPTSLQVSNIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLEAEITALLD 276
>sp|Q8PMJ5|DAPE_XANAC Succinyl-diaminopimelate desuccinylase OS=Xanthomonas axonopodis
pv. citri (strain 306) GN=dapE PE=3 SV=1
Length = 376
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 24/166 (14%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+AV + S+E G +D + + + + +G + W T + +G G
Sbjct: 125 LAVLLTSDEE----GDAIDGVRRVAEVFRERGQTIDWCITGEPSSTERLGDLLRVGRRGS 180
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PST 125
+ L V G H PHKA NP+ LA AL + R + D GFE+ P++
Sbjct: 181 LSGTLTVKGVQGHVAYPHKARNPIHLAAPALAELVARQWDD----------GFESFPPTS 230
Query: 126 MKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
++ + G N IPGE V+ ++R TP ++ + + +D
Sbjct: 231 LQLSNIHAGTGANNVIPGELQVAFNLRYTPHWDAPRLEAEITALLD 276
>sp|Q8PAU0|DAPE_XANCP Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris
pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dapE PE=3 SV=2
Length = 376
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 24/161 (14%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+AV + S+E G +D + L +G + W T + +G G
Sbjct: 126 LAVLLTSDEE----GDAIDGVRHVARLFAERGQQIDWCITGEPSSTERLGDLLRVGRRGS 181
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PST 125
+ L V G H PHKA NP+ LA AL + R + D GFE+ P++
Sbjct: 182 LSGNLIVKGVQGHVAYPHKARNPIHLAAPALAELIARQWDD----------GFESFPPTS 231
Query: 126 MKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166
++ + G N IPGE V+ ++R TP +N + + +
Sbjct: 232 LQISNIHAGTGANNVIPGELQVAFNLRYTPHWNAETLEREI 272
>sp|Q4USS4|DAPE_XANC8 Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris
pv. campestris (strain 8004) GN=dapE PE=3 SV=2
Length = 376
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 24/161 (14%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+AV + S+E G +D + L +G + W T + +G G
Sbjct: 126 LAVLLTSDEE----GDAIDGVRHVARLFAERGQQIDWCITGEPSSTERLGDLLRVGRRGS 181
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PST 125
+ L V G H PHKA NP+ LA AL + R + D GFE+ P++
Sbjct: 182 LSGNLIVKGVQGHVAYPHKARNPIHLAAPALAELIARQWDD----------GFESFPPTS 231
Query: 126 MKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166
++ + G N IPGE V+ ++R TP +N + + +
Sbjct: 232 LQISNIHAGTGANNVIPGELQVAFNLRYTPHWNAETLEREI 272
>sp|B0RW53|DAPE_XANCB Succinyl-diaminopimelate desuccinylase OS=Xanthomonas campestris
pv. campestris (strain B100) GN=dapE PE=3 SV=1
Length = 376
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 24/161 (14%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+AV + S+E G +D + L +G + W T + +G G
Sbjct: 126 LAVLLTSDEE----GDAIDGVRHVARLFAERGQQIDWCITGEPSSTERLGDLLRVGRRGS 181
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PST 125
+ L V G H PHKA NP+ LA AL + R + D GFE+ P++
Sbjct: 182 LSGNLIVKGVQGHVAYPHKARNPIHLAAPALAELIARQWDD----------GFESFPPTS 231
Query: 126 MKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166
++ + G N IPGE V+ ++R TP +N + + +
Sbjct: 232 LQISNIHAGTGANNVIPGELQVAFNLRYTPHWNAETLEREI 272
>sp|Q87F49|DAPE_XYLFT Succinyl-diaminopimelate desuccinylase OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=dapE PE=3 SV=1
Length = 377
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 24/152 (15%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+A+ + S+E G +D + K + +G + W T + +G G
Sbjct: 125 LAILLTSDEE----GQAIDGVRKVAETLRQRGQGIDWCLTGEPSSSKRLGDLLRVGRRGS 180
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTM 126
+ LHV G H PH+A NP+ LA+ A + R + D G+E+ PST
Sbjct: 181 LSATLHVKGVQGHVAYPHQARNPIHLALPAFAALTARHWDD----------GYESFPSTS 230
Query: 127 KPTQWSYPGGGINQ-IPGECTVSGDVRLTPFY 157
+ G G N IPG V+ ++R P +
Sbjct: 231 LQISNIHAGTGANNVIPGALEVAFNLRYNPHW 262
>sp|B2I6B4|DAPE_XYLF2 Succinyl-diaminopimelate desuccinylase OS=Xylella fastidiosa
(strain M23) GN=dapE PE=3 SV=1
Length = 377
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 24/152 (15%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+A+ + S+E G +D + K + +G + W T + +G G
Sbjct: 125 LAILLTSDEE----GQAIDGVRKVAETLRQRGQGIDWCLTGEPSSSKRLGDLLRVGRRGS 180
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTM 126
+ LHV G H PH+A NP+ LA+ A + R + D G+E+ PST
Sbjct: 181 LSATLHVKGVQGHVAYPHQARNPIHLALPAFAALTARHWDD----------GYESFPSTS 230
Query: 127 KPTQWSYPGGGINQ-IPGECTVSGDVRLTPFY 157
+ G G N IPG V+ ++R P +
Sbjct: 231 LQISNIHAGTGANNVIPGALEVAFNLRYNPHW 262
>sp|Q8S9S4|ILL1_ORYSJ IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp.
japonica GN=ILL1 PE=2 SV=1
Length = 442
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 37/218 (16%)
Query: 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC 61
R L E + +LK TV+ VF +EE G G ++ DG + ++ ++ + AD P
Sbjct: 149 RILQEHRDELKGTVVLVFQPAEEG----GGGAKKMIDDGAVENIEA--IFGVHVADVVP- 201
Query: 62 IGTGGMIP---------WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPH 112
IG P ++ ++GK H+ LPH I+P+ A + +Q ++ P
Sbjct: 202 IGVVASRPGPVMAGSGFFEAVISGKGGHAALPHHTIDPILAASNVIVSLQQLVSREADPL 261
Query: 113 PKEQVYGFETPSTMKPTQWSYPGGG-INQIPGECTVSGDVRLTPFYNVTDVMKRLQEY-- 169
+ V T + GGG N IP T+ G R + + +R++E
Sbjct: 262 DSQVV-----------TVGKFQGGGAFNVIPDSVTIGGTFRAFLKESFNQLKQRIEEVIV 310
Query: 170 ----VDDINENIEKLDTRGPVSKYVLPDENIRGRHPYI 203
V N ++ LD P + P N G H +
Sbjct: 311 SQASVQRCNAVVDFLDKDRP---FFPPTINSAGLHDFF 345
>sp|Q84XG9|ILL1_ORYSI IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp. indica
GN=ILL1 PE=2 SV=1
Length = 442
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 37/218 (16%)
Query: 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC 61
R L E + +LK TV+ VF +EE G G ++ DG + ++ ++ + AD P
Sbjct: 149 RILQEHRDELKGTVVLVFQPAEEG----GGGAKKMIDDGTVENIEA--IFGVHVADVVP- 201
Query: 62 IGTGGMIP---------WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPH 112
IG P ++ ++GK H+ LPH I+P+ A + +Q ++ P
Sbjct: 202 IGVVASRPGPVMAGSGFFEAVISGKGGHAALPHHTIDPILAASNVIVSLQQLVSREADPL 261
Query: 113 PKEQVYGFETPSTMKPTQWSYPGGG-INQIPGECTVSGDVRLTPFYNVTDVMKRLQEY-- 169
+ V T + GGG N IP T+ G R + + +R++E
Sbjct: 262 DSQVV-----------TVGKFQGGGAFNVIPDSVTIGGTFRAFLKESFNQLKQRIEEVIV 310
Query: 170 ----VDDINENIEKLDTRGPVSKYVLPDENIRGRHPYI 203
V N ++ LD P + P N G H +
Sbjct: 311 SQASVQRCNAVVDFLDKDRP---FFPPTINSAGLHDFF 345
>sp|Q9PH30|DAPE_XYLFA Succinyl-diaminopimelate desuccinylase OS=Xylella fastidiosa
(strain 9a5c) GN=dapE PE=3 SV=1
Length = 377
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 24/166 (14%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+A+ + S+E G +D + K + +G + W T + +G G
Sbjct: 125 LAILLTSDEE----GQAIDGVRKVAETLRQRGQGIDWCLTGEPSSSKRLGDLLRVGRRGS 180
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTM 126
+ LHV G H PH+A NP+ LA+ AL + R + D G E+ PST
Sbjct: 181 LSATLHVKGVQGHVAYPHQARNPIHLAVPALAALTARHWDD----------GDESFPSTS 230
Query: 127 KPTQWSYPGGGINQ-IPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ G G N IPG V+ ++R P ++ + + +D
Sbjct: 231 LQISNIHAGTGANNVIPGALEVAFNLRYNPHWSAPRLESEIVALLD 276
>sp|A3QGR1|DAPE2_SHELP Succinyl-diaminopimelate desuccinylase 2 OS=Shewanella loihica
(strain ATCC BAA-1088 / PV-4) GN=dapE2 PE=3 SV=1
Length = 377
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 20/137 (14%)
Query: 55 TADKQPC----IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYK--- 107
TADKQ IG G I +L + GK H P A+N L +A ++ ++ +
Sbjct: 160 TADKQAGDVIKIGRRGAISARLTLKGKQGHVAYPKNAVNALHMAARVMQALEALIWDEGS 219
Query: 108 -DFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166
DFP ++++ T N +PG C + ++R + Y+ +M R+
Sbjct: 220 DDFPG------------TSLQVTHVDSGAFTDNIVPGSCEICFNIRYSYRYSEAGIMARI 267
Query: 167 QEYVDDINENIEKLDTR 183
Q +D ++ + + R
Sbjct: 268 QACLDGLSLGEDAISLR 284
>sp|B0U296|DAPE_XYLFM Succinyl-diaminopimelate desuccinylase OS=Xylella fastidiosa
(strain M12) GN=dapE PE=3 SV=1
Length = 377
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 24/166 (14%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+A+ + S+E G +D + K + +G + W T + +G G
Sbjct: 125 LAILLTSDEE----GQAIDGVRKVAETLRQRGQRIDWCLTGEPSSSERLGDLLRVGRRGS 180
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTM 126
+ LHV G H PH+A NP+ LA+ AL + R + D G E+ PST
Sbjct: 181 LSATLHVKGVQGHVAYPHQARNPIHLAVPALAALTGRHWDD----------GDESFPSTS 230
Query: 127 KPTQWSYPGGGINQ-IPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ G G N IPG V+ ++R P ++ + + +D
Sbjct: 231 LQISNIHAGTGANNVIPGALEVAFNLRYNPHWSAPRLESEIVALLD 276
>sp|B4SQ35|DAPE_STRM5 Succinyl-diaminopimelate desuccinylase OS=Stenotrophomonas
maltophilia (strain R551-3) GN=dapE PE=3 SV=1
Length = 375
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 24/166 (14%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+AV + S+E G +D + L +G + W T + +G G
Sbjct: 125 LAVLLTSDEE----GDAIDGVRHVARLFAERGQRIDWCITGEPSSTATLGDLLRVGRRGS 180
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PST 125
+ KL V G H P KA NP+ A AL + R + D G+E+ P++
Sbjct: 181 LSAKLRVQGVQGHVAYPEKARNPIHQAAPALAELSARRWDD----------GYESFPPTS 230
Query: 126 MKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
++ + G N IPGE V ++R P ++ + + +D
Sbjct: 231 LQISNIHAGTGANNVIPGELEVDFNIRYNPHWDAPKLEAEITALLD 276
>sp|B2FIC0|DAPE_STRMK Succinyl-diaminopimelate desuccinylase OS=Stenotrophomonas
maltophilia (strain K279a) GN=dapE PE=3 SV=1
Length = 375
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 24/154 (15%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPC--------IGTGGM 67
+AV + S+E G +D + L +G + W T + +G G
Sbjct: 125 LAVLLTSDEE----GDAIDGVRHVARLFAARGQRIDWCITGEPSSTATLGDLLRVGRRGS 180
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET--PST 125
+ KL V G H P KA NP+ A AL + R + D G+E+ P++
Sbjct: 181 LSAKLRVQGVQGHVAYPEKARNPIHQAAPALAELCARRWDD----------GYESFPPTS 230
Query: 126 MKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159
++ + G N IPGE V ++R P ++
Sbjct: 231 LQISNIHAGTGANNVIPGELDVDFNIRYNPHWDA 264
>sp|Q0BUB7|DAPE_GRABC Succinyl-diaminopimelate desuccinylase OS=Granulibacter
bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=dapE
PE=3 SV=2
Length = 383
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
IG G + L V G+ H PH+A NPL + AL + T D + GFE
Sbjct: 172 IGRRGSLNATLTVRGRQGHVAYPHRADNPLPRLVAALHALTTTRLDD-------GMEGFE 224
Query: 122 TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD 172
PS+++ T N IP + ++R P + D+ + L+ V D
Sbjct: 225 -PSSLQLTTVDVGNPATNVIPEQAQARLNIRFNPLHRGDDLARWLRGIVQD 274
>sp|Q6LXF3|Y1398_METMP Uncharacterized metallohydrolase MMP1398 OS=Methanococcus
maripaludis (strain S2 / LL) GN=MMP1398 PE=1 SV=1
Length = 415
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 25/191 (13%)
Query: 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGV------DALV--KDGLLNKLKGGPL-Y 51
++ + E K+ K + +F+A EE+ + G+ D + KD ++ G P
Sbjct: 133 LKMIFEEKIDPKYNLNLIFVADEEDGSKYGLSYLVNNFEDEIFSSKDLIIVPDFGMPEGE 192
Query: 52 WIDTADKQPCIGTGGMIPW-KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFP 110
+I+ A+K I W K +TGK H +P IN +A K + + Y +
Sbjct: 193 FIEIAEKN--------ILWLKFKITGKQCHGSVPENGINADLIAFSFGKGLYDKLYGKY- 243
Query: 111 PHPKEQVYGFETP--STMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQE 168
+ + P ST +PT IN IPG ++ D R+ P Y+ +V+ ++
Sbjct: 244 ----DGINPIFNPAFSTFEPTILKNNIENINTIPGYVELNFDCRIIPKYDPKEVLSDIEN 299
Query: 169 YVDDINENIEK 179
Y++ IEK
Sbjct: 300 YIEVFKNEIEK 310
>sp|A0L3N2|DAPE_MAGSM Succinyl-diaminopimelate desuccinylase OS=Magnetococcus sp. (strain
MC-1) GN=dapE PE=3 SV=2
Length = 380
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 61 CIGTG--GMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVY 118
CI G G + +L + G H PH NP+ A L I + + +Q
Sbjct: 174 CIKNGRRGSVNGRLTIRGVQGHVAYPHLVDNPIHRAAPVLAAISSMTF--------DQGD 225
Query: 119 GFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
F P++++ T G N +PGE T ++R + + + R+++ +D
Sbjct: 226 RFFQPTSLQFTAVQSGGSATNVVPGELTAGFNIRFSAMHTPESLEARIRQVLD 278
>sp|Q0A7H5|DAPE_ALHEH Succinyl-diaminopimelate desuccinylase OS=Alkalilimnicola ehrlichei
(strain MLHE-1) GN=dapE PE=3 SV=1
Length = 375
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEAL-KVIQTRFYKDFPPHPKEQVYGF 120
+G G + +L V G H PH A NP+ A+ AL +++ TR+ + P
Sbjct: 175 VGRRGSLNGRLTVRGDQGHVAYPHLARNPVHQALAALDELVTTRWDEGNDHFP------- 227
Query: 121 ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
P++ + + G N IPGE V+ + R + ++ +R++ +D
Sbjct: 228 --PTSFQISNVQAGTGATNVIPGELEVTFNFRFSTEVTADELQQRVEAVLD 276
>sp|Q8H3C7|ILL9_ORYSJ IAA-amino acid hydrolase ILR1-like 9 OS=Oryza sativa subsp.
japonica GN=ILL9 PE=2 SV=2
Length = 440
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 24/176 (13%)
Query: 4 LGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWID--------T 55
L + K +LK TV VF +EE SA G ++++G+L+ + +D
Sbjct: 157 LQKRKNELKGTVKLVFQPAEEGSA----GAYYVLQEGVLDDVSAMFGMHVDPALPVGVVA 212
Query: 56 ADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKE 115
A P T G + +TGK H+ PH AI+P+ A A+ +Q ++ P
Sbjct: 213 ARPGPFAATSGR--FLATITGKGGHAAFPHDAIDPVVAASNAILSLQQIVAREIDP---- 266
Query: 116 QVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ + G N IP G +R + +MKR++E V+
Sbjct: 267 ------LQGAVVSITFVKGGEAYNVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVE 316
>sp|O04373|ILL4_ARATH IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsis thaliana
GN=ILL4 PE=1 SV=2
Length = 440
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 88/219 (40%), Gaps = 43/219 (19%)
Query: 4 LGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLL------------NKLKGGPLY 51
L E + +L+ TV+ VF +EE G G +V+ G+L N+L G +
Sbjct: 150 LKEHEEELQGTVVLVFQPAEEG----GGGAKKIVEAGVLENVSAIFGLHVTNQLALGQV- 204
Query: 52 WIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPP 111
++ + P + G +K ++GK H+ LP I+P+ A + +Q ++ P
Sbjct: 205 ---SSREGPMLAGSGF--FKAKISGKGGHAALPQHTIDPILAASNVIVSLQHLVSREADP 259
Query: 112 HPKEQVYGFETPSTMKPTQWSYPGGG-INQIPGECTVSGDVRLTPFYNVTDVMKRL---- 166
+ V T + GGG N IP T+ G R + + KR+
Sbjct: 260 LDSQVV-----------TVAKFEGGGAFNVIPDSVTIGGTFRAFSTKSFMQLKKRIEQVI 308
Query: 167 --QEYVDDINENIEKLDTRGPVSKYVLPDENIRGRHPYI 203
Q V+ N ++ ++ P + P N + H +
Sbjct: 309 TRQASVNMCNATVDFIEEEKP---FFPPTVNDKALHQFF 344
>sp|Q87MI6|DAPE_VIBPA Succinyl-diaminopimelate desuccinylase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=dapE PE=3 SV=1
Length = 378
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 18/121 (14%)
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVY 118
G G I L V G H PH A NP+ ++ A+ + T + FPP
Sbjct: 178 GRRGSITGDLTVKGTQGHVAYPHLANNPVHASLLAIHELATTEWDKGNDYFPP------T 231
Query: 119 GFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD--DINEN 176
F+ P+ T G N IPGE V ++R + N +++R+ E +D D+N +
Sbjct: 232 SFQIPNVSAGT------GASNVIPGEFNVQFNLRFSTELNNDTIVQRVTETLDKHDLNYD 285
Query: 177 I 177
+
Sbjct: 286 L 286
>sp|Q57899|Y457_METJA Uncharacterized metallohydrolase MJ0457 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0457 PE=3 SV=1
Length = 410
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
IG G++ K ++ GK H P +N +A + Y+ F +++
Sbjct: 195 IGEKGILWIKFNIKGKQCHGSTPENGLNADIVAFNFANELYNGLYEKF-----DEINSIF 249
Query: 122 TP--STMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 173
P ST +PT N IPG V D R+ P Y + +V++ + +++ +
Sbjct: 250 LPEYSTFEPTILKNKVENPNTIPGYVEVVFDCRILPTYKIEEVLEFINKFIKNF 303
>sp|Q5LN80|DAPE_RUEPO Succinyl-diaminopimelate desuccinylase OS=Ruegeria pomeroyi (strain
ATCC 700808 / DSM 15171 / DSS-3) GN=dapE PE=3 SV=1
Length = 380
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 65 GGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPS 124
G M W VTG HS PH+A NPL R H +Q PS
Sbjct: 181 GSMTAW-FTVTGVQGHSAYPHRAKNPLP--------AMARLMDRLASHGLDQGTDHFDPS 231
Query: 125 TMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENI 177
T+ N IP +C + ++R ++ + +Q D + E
Sbjct: 232 TLAVVTIDTGNTATNVIPAQCRGAVNIRFNDLHSGASLTGWMQGEADRVAEEF 284
>sp|Q886Q4|DAPE_PSESM Succinyl-diaminopimelate desuccinylase OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=dapE PE=3 SV=1
Length = 383
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFY---KDFPPHPKEQVYG 119
G G + KL V GK H PH A NP+ LA AL + + DF P
Sbjct: 184 GRRGSLGAKLTVRGKQGHVAYPHLAKNPIHLATPALAELAAEHWDNGNDFFP-------- 235
Query: 120 FETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
P++ + + + G N IPG+ + R + V + +R+ +D
Sbjct: 236 ---PTSFQISNLNSGTGATNVIPGDLVAVFNFRFSTESTVEGLQQRVAAILD 284
>sp|B4RDU4|DAPE_PHEZH Succinyl-diaminopimelate desuccinylase OS=Phenylobacterium zucineum
(strain HLK1) GN=dapE PE=3 SV=1
Length = 380
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
+G G I ++ V G H PH+A NP+ + + L +Q R + +P+ Q
Sbjct: 177 VGRRGSINAEILVEGIQGHVAYPHRAANPVPVLVRLLAALQDRALDE--GYPEFQ----- 229
Query: 122 TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTP 155
PS ++ T P N IPG ++R P
Sbjct: 230 -PSNLEVTMIDVPNTATNVIPGTAKARLNIRFNP 262
>sp|Q2NS82|DAPE_SODGM Succinyl-diaminopimelate desuccinylase OS=Sodalis glossinidius
(strain morsitans) GN=dapE PE=3 SV=1
Length = 375
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALK-VIQTRFYKDFPPHPKEQVYGFE 121
G G + L V G H PH A NP AM ALK +++T++ ++ F
Sbjct: 176 GRRGSLTANLVVQGVQGHVAYPHLADNPFHRAMAALKELVETQW---------DEGNSFF 226
Query: 122 TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKR 165
P+TM+ G N IPGE V + R + +TDV+ R
Sbjct: 227 PPTTMQIANIHAGTGSNNVIPGELLVQFNFRFST--ELTDVIIR 268
>sp|C5BQE9|DAPE_TERTT Succinyl-diaminopimelate desuccinylase OS=Teredinibacter turnerae
(strain ATCC 39867 / T7901) GN=dapE PE=3 SV=1
Length = 375
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 59/163 (36%), Gaps = 26/163 (15%)
Query: 16 IAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTG--------GM 67
IA I S+E G+ + VK + +G + W + G G
Sbjct: 125 IAFLITSDEE----GIAANGTVKVVEWLEARGEKVTWCLVGEPSSTQSVGDVIKNGRRGS 180
Query: 68 IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFY---KDFPPHPKEQVYGFETPS 124
+ KL V GK H PH A NP+ L AL + + DF P QV F +
Sbjct: 181 LGCKLTVKGKQGHVAYPHLAKNPIHLVAPALADLAAEQWDEGNDFFPATSFQVSNFNAGT 240
Query: 125 TMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQ 167
G N IPGE + + R + ++ +R +
Sbjct: 241 -----------GATNVIPGEAAIVFNFRFSTESTADELKQRTE 272
>sp|A8GHK9|DAPE_SERP5 Succinyl-diaminopimelate desuccinylase OS=Serratia proteamaculans
(strain 568) GN=dapE PE=3 SV=1
Length = 375
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALK---VIQTRFYKDFPPHPKEQVYG 119
G G I LH+ G H PH A NP+ AM AL I+ +F P
Sbjct: 176 GRRGSITANLHIHGIQGHVAYPHLADNPVHRAMPALNELVAIEWDRGNEFFP-------- 227
Query: 120 FETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD--DINENI 177
P++M+ G N IPGE V + R + + +R++E ++ +N +I
Sbjct: 228 ---PTSMQIANVQAGTGSNNVIPGEMFVQFNFRFSTESTDATIKQRVEELLERHQLNYSI 284
Query: 178 E 178
E
Sbjct: 285 E 285
>sp|B5FGX0|DAPE_VIBFM Succinyl-diaminopimelate desuccinylase OS=Vibrio fischeri (strain
MJ11) GN=dapE PE=3 SV=1
Length = 377
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVY 118
G G + L V G H PH A NP+ AM AL + T + + FPP
Sbjct: 178 GRRGSLTGNLTVKGIQGHVAYPHIARNPIHQAMPALSELATTVWDNGNDYFPP------T 231
Query: 119 GFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
F+ P+ T G N IPG + + R + V ++ +R+ E +D
Sbjct: 232 SFQIPNMNGGT------GASNVIPGTVDIMFNFRFSTESTVDELQQRVVEILD 278
>sp|Q5E3I7|DAPE_VIBF1 Succinyl-diaminopimelate desuccinylase OS=Vibrio fischeri (strain
ATCC 700601 / ES114) GN=dapE PE=3 SV=1
Length = 377
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVY 118
G G + L V G H PH A NP+ AM AL + T + + FPP
Sbjct: 178 GRRGSLTGNLTVKGIQGHVAYPHIARNPIHQAMPALSELATTVWDNGNDYFPP------T 231
Query: 119 GFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
F+ P+ T G N IPG + + R + V ++ +R+ E +D
Sbjct: 232 SFQIPNMNGGT------GASNVIPGTVDIMFNFRFSTESTVDELQQRVVEILD 278
>sp|C3LRV6|ARGE_VIBCM Acetylornithine deacetylase OS=Vibrio cholerae serotype O1 (strain
M66-2) GN=argE PE=3 SV=1
Length = 378
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 66 GMIPWKLHVTGKLFHSGLPHKAINPLELAME---ALKVIQTRFYKDFPPHPKEQVYGFET 122
G + + VTGK HS P +N +E+ E AL ++ R K++ HP GFE
Sbjct: 177 GHVANAIRVTGKSGHSSNPALGVNAIEIMHEVLFALMQLRDRLIKEY-HHP-----GFEI 230
Query: 123 PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE----NIE 178
P+ + G N+I G C + DVR P ++ + + + + ++ + IE
Sbjct: 231 PTPTLNLGHIHGGDSPNRICGCCELHYDVRPLPGISLDGLDNLMHDALREVQQKWPGRIE 290
Query: 179 KLDTRGPVSKYVLPDENIRGRHPYI 203
+ P+ Y + HP+I
Sbjct: 291 LVPLHDPIPGYECAHD-----HPFI 310
>sp|Q9KNT5|ARGE_VIBCH Acetylornithine deacetylase OS=Vibrio cholerae serotype O1 (strain
ATCC 39315 / El Tor Inaba N16961) GN=argE PE=3 SV=1
Length = 378
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 66 GMIPWKLHVTGKLFHSGLPHKAINPLELAME---ALKVIQTRFYKDFPPHPKEQVYGFET 122
G + + VTGK HS P +N +E+ E AL ++ R K++ HP GFE
Sbjct: 177 GHVANAIRVTGKSGHSSNPALGVNAIEIMHEVLFALMQLRDRLIKEY-HHP-----GFEI 230
Query: 123 PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE----NIE 178
P+ + G N+I G C + DVR P ++ + + + + ++ + IE
Sbjct: 231 PTPTLNLGHIHGGDSPNRICGCCELHYDVRPLPGISLDGLDNLMHDALREVQQKWPGRIE 290
Query: 179 KLDTRGPVSKYVLPDENIRGRHPYI 203
+ P+ Y + HP+I
Sbjct: 291 LVPLHDPIPGYECAHD-----HPFI 310
>sp|A5F4Z7|ARGE_VIBC3 Acetylornithine deacetylase OS=Vibrio cholerae serotype O1 (strain
ATCC 39541 / Ogawa 395 / O395) GN=argE PE=3 SV=1
Length = 378
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 66 GMIPWKLHVTGKLFHSGLPHKAINPLELAME---ALKVIQTRFYKDFPPHPKEQVYGFET 122
G + + VTGK HS P +N +E+ E AL ++ R K++ HP GFE
Sbjct: 177 GHVANAIRVTGKSGHSSNPALGVNAIEIMHEVLFALMQLRDRLIKEY-HHP-----GFEI 230
Query: 123 PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE----NIE 178
P+ + G N+I G C + DVR P ++ + + + + ++ + IE
Sbjct: 231 PTPTLNLGHIHGGDSPNRICGCCELHYDVRPLPGISLDGLDNLMHDALREVQQKWPGRIE 290
Query: 179 KLDTRGPVSKYVLPDENIRGRHPYI 203
+ P+ Y + HP+I
Sbjct: 291 LVPLHDPIPGYECAHD-----HPFI 310
>sp|B2VE50|DAPE_ERWT9 Succinyl-diaminopimelate desuccinylase OS=Erwinia tasmaniensis
(strain DSM 17950 / Et1/99) GN=dapE PE=3 SV=1
Length = 375
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEAL-KVIQTRFYKDFPPHPKEQVYGFE 121
G G I L + G H PH A NP+ AM AL +++ T + K P
Sbjct: 176 GRRGSITANLTIHGVQGHVAYPHLADNPVHRAMPALNELVATEWDKGNEFFP-------- 227
Query: 122 TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175
P++M+ G N IPG+C V + R + +TDVM +Q+ V + E
Sbjct: 228 -PTSMQIANVQAGTGSNNVIPGDCFVQFNFRFST--ELTDVM--IQQKVQALLE 276
>sp|A8F095|DAPE_RICCK Succinyl-diaminopimelate desuccinylase OS=Rickettsia canadensis
(strain McKiel) GN=dapE PE=3 SV=1
Length = 384
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEAL-KVIQTRFYKDFPPHPKEQVYGF 120
IG G + +KL++ G + H PHKA NPL ++ L ++I +F ++ F
Sbjct: 179 IGRRGSVNFKLNIEGLVGHVAYPHKANNPLSCLIKILNELINIKF---------DEGTEF 229
Query: 121 ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 170
S ++ T N IP ++R +N + + +++ V
Sbjct: 230 FQSSNLEVTNIDVGNNTSNVIPASVEAYFNIRFNNLHNAETLGQLIEQIV 279
>sp|Q6D7N4|DAPE_ERWCT Succinyl-diaminopimelate desuccinylase OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=dapE
PE=3 SV=1
Length = 375
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEAL-KVIQTRFYK--DFPPHPKEQVYG 119
G G I L + G H PH A NP+ A AL ++I T + + DF P
Sbjct: 176 GRRGSITANLRIHGMQGHVAYPHLADNPVHRAAPALNELIATEWDRGNDFFP-------- 227
Query: 120 FETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVM--KRLQEYVD 171
P+TM+ G N IPGE V + R + +TDV+ +R+ E +D
Sbjct: 228 ---PTTMQIANIQAGTGSNNVIPGELFVQFNFRFST--ELTDVLIQQRVAELLD 276
>sp|Q48F49|DAPE_PSE14 Succinyl-diaminopimelate desuccinylase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=dapE PE=3 SV=1
Length = 383
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
Query: 63 GTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFY---KDFPPHPKEQVYG 119
G G + L V GK H PH A NP+ LA+ AL + + DF P
Sbjct: 184 GRRGSLGATLTVRGKQGHVAYPHLAKNPIHLAVPALAELAAEHWDHGNDFFP-------- 235
Query: 120 FETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
P++ + + + G N IPG+ + R + V + +R+ +D
Sbjct: 236 ---PTSFQISNLNAGTGATNVIPGDLVAVFNFRFSTESTVEGLQQRVAAILD 284
>sp|B0T134|DAPE_CAUSK Succinyl-diaminopimelate desuccinylase OS=Caulobacter sp. (strain
K31) GN=dapE PE=3 SV=2
Length = 387
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
IG G I + V G+ H P +A NP+ + ++ L +Q+R E GF+
Sbjct: 181 IGRRGSINAWIAVDGRQGHVAYPQRAANPIPVMVDILSRLQSRVL-------DEGYEGFQ 233
Query: 122 TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD 172
PS ++ T N IP ++R P + D+ +++ D
Sbjct: 234 -PSNLEVTTIDVGNTATNVIPASAKARINIRFNPAHQGKDLRAWIEQECRD 283
>sp|Q9JYL2|DAPE_NEIMB Succinyl-diaminopimelate desuccinylase OS=Neisseria meningitidis
serogroup B (strain MC58) GN=dapE PE=1 SV=1
Length = 381
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 20/164 (12%)
Query: 16 IAVFIAS-EENSAITGVG--VDAL-VKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWK 71
IA+ I S EE A+ G VD L +D L++ G +D G G +
Sbjct: 127 IALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMIKNGRRGSLSGN 186
Query: 72 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVYGFETPSTMK 127
L V GK H PH AINP+ AL + + + FP P++ +
Sbjct: 187 LTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFP------------PTSFQ 234
Query: 128 PTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ + G N IPGE V + R + + +R+ +D
Sbjct: 235 ISNINGGTGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILD 278
>sp|A1KUW7|DAPE_NEIMF Succinyl-diaminopimelate desuccinylase OS=Neisseria meningitidis
serogroup C / serotype 2a (strain ATCC 700532 / FAM18)
GN=dapE PE=3 SV=1
Length = 381
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 20/164 (12%)
Query: 16 IAVFIAS-EENSAITGVG--VDAL-VKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWK 71
IA+ I S EE A+ G VD L +D L++ G +D G G +
Sbjct: 127 IALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMIKNGRRGSLSGN 186
Query: 72 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVYGFETPSTMK 127
L V GK H PH AINP+ AL + + + FP P++ +
Sbjct: 187 LTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFP------------PTSFQ 234
Query: 128 PTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ + G N IPGE V + R + + +R+ +D
Sbjct: 235 ISNINGGTGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILD 278
>sp|Q5F812|DAPE_NEIG1 Succinyl-diaminopimelate desuccinylase OS=Neisseria gonorrhoeae
(strain ATCC 700825 / FA 1090) GN=dapE PE=3 SV=1
Length = 381
Score = 38.1 bits (87), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 20/164 (12%)
Query: 16 IAVFIAS-EENSAITGVG--VDALVKDG-LLNKLKGGPLYWIDTADKQPCIGTGGMIPWK 71
IA+ I S EE A+ G VD L G L++ G +D G G +
Sbjct: 127 IALLITSDEEGDALDGTTKVVDVLKARGELIDYCIVGEPTAVDKLGDMIKNGRRGSLSGS 186
Query: 72 LHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVYGFETPSTMK 127
L V GK H PH A+NP+ AL + + + FP P++ +
Sbjct: 187 LTVKGKQGHIAYPHLAVNPIHTFAPALLELTQEIWDEGNEYFP------------PTSFQ 234
Query: 128 PTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171
+ + G N IPGE V + R + T + +R+ +D
Sbjct: 235 ISNINGGTGATNVIPGELNVKFNFRFSTESTETGLKQRVHAILD 278
>sp|Q9ABF3|DAPE_CAUCR Succinyl-diaminopimelate desuccinylase OS=Caulobacter crescentus
(strain ATCC 19089 / CB15) GN=dapE PE=3 SV=1
Length = 386
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
IG G I + V G+ H PH+A NP+ + ++ L ++ R D GF+
Sbjct: 180 IGRRGSINAWITVEGRQGHVAYPHRAANPVPVLVDILSALKARVLDD-------GYTGFQ 232
Query: 122 TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQ 167
PS ++ T N IP ++R P + D+ ++
Sbjct: 233 -PSNLEITTIDVGNTATNVIPAAAKARVNIRFNPAHKGKDLAAWIE 277
>sp|B8GYE7|DAPE_CAUCN Succinyl-diaminopimelate desuccinylase OS=Caulobacter crescentus
(strain NA1000 / CB15N) GN=dapE PE=3 SV=1
Length = 386
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
IG G I + V G+ H PH+A NP+ + ++ L ++ R D GF+
Sbjct: 180 IGRRGSINAWITVEGRQGHVAYPHRAANPVPVLVDILSALKARVLDD-------GYTGFQ 232
Query: 122 TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQ 167
PS ++ T N IP ++R P + D+ ++
Sbjct: 233 -PSNLEITTIDVGNTATNVIPAAAKARVNIRFNPAHKGKDLAAWIE 277
>sp|A9ILD7|DAPE_BART1 Succinyl-diaminopimelate desuccinylase OS=Bartonella tribocorum
(strain CIP 105476 / IBS 506) GN=dapE PE=3 SV=1
Length = 390
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE 121
IG G I + V G+ H P +A NPL LA + ++ + T+ D + F+
Sbjct: 182 IGRRGSISGIITVKGRQGHVAFPERAANPLPLASKLIQAL-TQIALD------QGTENFQ 234
Query: 122 TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175
PS ++ T +N IP + TV ++R + +M+ +++ + + E
Sbjct: 235 -PSNLELTTIDTGNLAVNVIPAQTTVRFNIRYNDLWTKETLMEEIEKRLSLVQE 287
>sp|B7VLL4|ARGE_VIBSL Acetylornithine deacetylase OS=Vibrio splendidus (strain LGP32)
GN=argE PE=3 SV=1
Length = 378
Score = 37.7 bits (86), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 18/151 (11%)
Query: 60 PCIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAME---ALKVIQTRFYKDFPPHPKEQ 116
P G G + + VTGK HS P +N +E+ E AL ++ + K++ HP
Sbjct: 171 PIRGHKGHVANAVRVTGKSGHSSDPALGVNAIEIMHEVLFALMQLRDKLVKEY-HHP--- 226
Query: 117 VYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE- 175
GF PS + G N+I G C + DVR P ++ + L+ + ++
Sbjct: 227 --GFAIPSPTLNLGHIHGGDSANRICGCCELHYDVRPLPGISLDGLDNMLRSALKEVEAK 284
Query: 176 ---NIEKLDTRGPVSKYVLPDENIRGRHPYI 203
IE P+ Y + HP+I
Sbjct: 285 WPGRIEITPLHEPIPGY-----ECQHDHPFI 310
>sp|Q9ZC93|DAPE_RICPR Succinyl-diaminopimelate desuccinylase OS=Rickettsia prowazekii
(strain Madrid E) GN=dapE PE=3 SV=1
Length = 383
Score = 37.7 bits (86), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Query: 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEAL-KVIQTRFYKDFPPHPKEQVYGF 120
IG G + +KL++ G H PHKA NPL ++ L ++I + ++ F
Sbjct: 179 IGRRGSVNFKLNIVGLAGHVAYPHKANNPLPCLIKILNELINIKL---------DEGTEF 229
Query: 121 ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 170
S ++ T N IP ++R +NV + + +++ +
Sbjct: 230 FQNSNLEVTNIDVDNDTSNTIPASAAAHFNIRFNSLHNVETLRQLIEQII 279
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,626,706
Number of Sequences: 539616
Number of extensions: 3875545
Number of successful extensions: 9424
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 165
Number of HSP's that attempted gapping in prelim test: 9316
Number of HSP's gapped (non-prelim): 225
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)