Query 028674
Match_columns 205
No_of_seqs 171 out of 1222
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 15:12:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08588 succinyl-diaminopimel 100.0 1.3E-26 2.8E-31 192.9 18.9 162 2-175 113-274 (377)
2 COG1473 AbgB Metal-dependent a 99.9 1.5E-26 3.2E-31 190.9 16.5 178 2-194 116-303 (392)
3 PRK06915 acetylornithine deace 99.9 1.6E-25 3.4E-30 188.9 18.8 166 2-175 147-312 (422)
4 TIGR01910 DapE-ArgE acetylorni 99.9 2.2E-25 4.8E-30 185.4 18.0 165 2-175 118-283 (375)
5 PRK13013 succinyl-diaminopimel 99.9 3.8E-25 8.1E-30 186.9 19.6 172 1-175 135-319 (427)
6 PLN02280 IAA-amino acid hydrol 99.9 4.5E-25 9.7E-30 187.8 17.5 158 2-175 199-364 (478)
7 TIGR01892 AcOrn-deacetyl acety 99.9 1.6E-24 3.5E-29 179.4 19.2 161 2-174 111-272 (364)
8 PRK07522 acetylornithine deace 99.9 1.3E-24 2.9E-29 181.2 17.9 163 2-172 117-280 (385)
9 PRK05111 acetylornithine deace 99.9 2.3E-24 5E-29 179.7 18.2 162 2-175 124-286 (383)
10 TIGR01246 dapE_proteo succinyl 99.9 1.9E-24 4E-29 179.5 17.3 166 2-178 109-280 (370)
11 PRK13009 succinyl-diaminopimel 99.9 3.4E-24 7.3E-29 178.2 18.4 166 2-178 112-283 (375)
12 PRK08651 succinyl-diaminopimel 99.9 4.5E-24 9.8E-29 178.5 18.7 162 2-175 127-291 (394)
13 TIGR01891 amidohydrolases amid 99.9 2.8E-24 6E-29 178.1 16.7 158 2-175 103-268 (363)
14 TIGR01900 dapE-gram_pos succin 99.9 4.7E-24 1E-28 177.3 18.0 156 8-172 124-279 (373)
15 PLN02693 IAA-amino acid hydrol 99.9 5.3E-24 1.2E-28 179.9 18.1 155 2-174 149-311 (437)
16 PRK08737 acetylornithine deace 99.9 6.6E-24 1.4E-28 175.7 18.1 151 11-173 117-268 (364)
17 PRK08652 acetylornithine deace 99.9 8.5E-24 1.8E-28 174.0 16.7 149 11-178 107-255 (347)
18 PRK13007 succinyl-diaminopimel 99.9 1.4E-23 3.1E-28 173.0 18.0 156 10-174 112-267 (352)
19 PRK07338 hypothetical protein; 99.9 6.9E-24 1.5E-28 177.9 16.3 153 2-174 142-297 (402)
20 PRK06133 glutamate carboxypept 99.9 9.7E-24 2.1E-28 177.4 16.3 151 2-172 149-302 (410)
21 PRK13004 peptidase; Reviewed 99.9 7.1E-23 1.5E-27 171.7 18.5 159 1-171 122-280 (399)
22 PRK09290 allantoate amidohydro 99.9 3.7E-23 8.1E-28 174.1 16.8 159 2-175 105-313 (413)
23 TIGR03526 selenium_YgeY putati 99.9 8E-23 1.7E-27 171.1 18.5 159 2-173 121-280 (395)
24 PRK13983 diaminopimelate amino 99.9 6.4E-23 1.4E-27 171.8 17.6 166 2-175 130-301 (400)
25 PRK00466 acetyl-lysine deacety 99.9 7.1E-23 1.5E-27 168.6 17.1 144 2-172 105-249 (346)
26 PRK06837 acetylornithine deace 99.9 9.2E-23 2E-27 172.4 18.2 166 2-176 151-318 (427)
27 TIGR03320 ygeY M20/DapE family 99.9 8.2E-23 1.8E-27 171.1 17.7 159 2-173 121-280 (395)
28 PRK12892 allantoate amidohydro 99.9 3.7E-23 8.1E-28 174.0 15.6 159 1-174 105-312 (412)
29 TIGR01880 Ac-peptdase-euk N-ac 99.9 4.1E-23 8.8E-28 173.2 14.5 166 2-176 125-299 (400)
30 PRK12893 allantoate amidohydro 99.9 5.5E-23 1.2E-27 173.0 14.8 160 1-175 107-312 (412)
31 PRK09133 hypothetical protein; 99.9 7.2E-23 1.6E-27 175.0 13.1 164 2-172 154-366 (472)
32 PRK12891 allantoate amidohydro 99.9 3.8E-22 8.2E-27 168.0 16.0 158 1-175 107-312 (414)
33 PRK08262 hypothetical protein; 99.9 1.4E-22 2.9E-27 173.9 13.4 172 2-178 167-385 (486)
34 PRK12890 allantoate amidohydro 99.9 5.7E-22 1.2E-26 166.9 16.5 162 2-175 106-314 (414)
35 PRK07473 carboxypeptidase; Pro 99.9 5.8E-22 1.3E-26 164.9 15.8 148 2-171 125-275 (376)
36 PRK06446 hypothetical protein; 99.9 3.4E-22 7.4E-27 169.3 14.1 166 2-174 116-332 (436)
37 PRK08596 acetylornithine deace 99.9 2.7E-21 5.7E-26 163.2 17.8 162 1-174 130-302 (421)
38 PRK04443 acetyl-lysine deacety 99.9 2.7E-21 5.8E-26 159.4 16.4 147 8-172 107-254 (348)
39 TIGR01879 hydantase amidase, h 99.9 2.4E-21 5.2E-26 162.5 16.1 160 1-175 98-305 (401)
40 PRK08201 hypothetical protein; 99.9 2.3E-21 5E-26 165.1 15.2 167 2-173 133-350 (456)
41 TIGR01883 PepT-like peptidase 99.9 1E-21 2.2E-26 162.5 12.7 151 2-175 113-266 (361)
42 PRK09104 hypothetical protein; 99.9 6.6E-21 1.4E-25 162.7 14.5 167 2-173 141-358 (464)
43 KOG2275 Aminoacylase ACY1 and 99.9 1.1E-20 2.5E-25 152.9 14.5 173 1-178 141-319 (420)
44 PRK07906 hypothetical protein; 99.9 1.5E-20 3.2E-25 159.0 14.3 163 2-170 118-321 (426)
45 TIGR03176 AllC allantoate amid 99.8 3.8E-20 8.3E-25 155.3 15.7 161 1-176 100-307 (406)
46 TIGR01902 dapE-lys-deAc N-acet 99.8 5.5E-20 1.2E-24 150.9 16.1 135 12-168 101-236 (336)
47 PRK07907 hypothetical protein; 99.8 7E-20 1.5E-24 155.8 16.1 162 8-173 140-342 (449)
48 TIGR01886 dipeptidase dipeptid 99.8 1.5E-19 3.3E-24 154.2 17.3 159 1-172 129-369 (466)
49 COG0624 ArgE Acetylornithine d 99.8 3E-19 6.4E-24 150.3 17.7 164 2-175 129-307 (409)
50 PRK07079 hypothetical protein; 99.8 1.5E-19 3.3E-24 154.5 14.9 167 2-174 140-354 (469)
51 PRK13381 peptidase T; Provisio 99.8 2.4E-19 5.3E-24 150.5 14.5 150 2-175 151-302 (404)
52 PF07687 M20_dimer: Peptidase 99.8 1.2E-19 2.5E-24 125.7 10.1 109 62-175 1-109 (111)
53 PRK07318 dipeptidase PepV; Rev 99.8 2.7E-19 5.8E-24 152.8 14.0 165 1-174 130-371 (466)
54 PRK05469 peptidase T; Provisio 99.8 6E-19 1.3E-23 148.4 13.4 150 2-175 153-304 (408)
55 PRK13799 unknown domain/N-carb 99.8 3.2E-18 7E-23 149.5 16.4 162 1-176 282-492 (591)
56 PRK13590 putative bifunctional 99.8 5.6E-18 1.2E-22 148.1 16.8 160 1-176 282-490 (591)
57 PRK07205 hypothetical protein; 99.8 2.8E-17 6E-22 139.7 18.0 164 1-174 128-348 (444)
58 PRK15026 aminoacyl-histidine d 99.8 5.9E-18 1.3E-22 144.7 12.9 142 2-171 125-288 (485)
59 TIGR01882 peptidase-T peptidas 99.8 1.5E-18 3.3E-23 145.9 9.2 151 2-175 155-306 (410)
60 TIGR01887 dipeptidaselike dipe 99.8 2.6E-17 5.6E-22 139.7 15.8 161 1-170 118-354 (447)
61 PRK06156 hypothetical protein; 99.7 1.1E-16 2.4E-21 138.4 15.9 163 2-174 167-416 (520)
62 TIGR01893 aa-his-dipept aminoa 99.7 2.3E-15 5E-20 129.0 13.8 142 10-174 126-285 (477)
63 PRK08554 peptidase; Reviewed 99.6 4.4E-14 9.5E-19 119.8 13.2 162 2-173 116-339 (438)
64 KOG2276 Metalloexopeptidases [ 99.0 1E-08 2.3E-13 83.6 11.3 171 1-176 144-367 (473)
65 COG4187 RocB Arginine degradat 98.8 1.4E-08 3E-13 83.7 7.1 155 9-176 159-328 (553)
66 COG2195 PepD Di- and tripeptid 98.5 6.6E-08 1.4E-12 80.8 3.3 145 9-175 165-311 (414)
67 PF01546 Peptidase_M20: Peptid 97.8 1.1E-05 2.4E-10 60.5 2.1 57 2-61 49-106 (189)
68 TIGR01893 aa-his-dipept aminoa 94.4 0.12 2.6E-06 44.7 6.4 48 124-178 338-385 (477)
69 PF04389 Peptidase_M28: Peptid 94.2 0.016 3.4E-07 43.1 0.5 51 2-55 39-89 (179)
70 TIGR03107 glu_aminopep glutamy 93.5 0.088 1.9E-06 43.7 3.6 40 10-57 197-236 (350)
71 PF05343 Peptidase_M42: M42 gl 93.2 0.077 1.7E-06 42.9 2.8 44 2-55 147-190 (292)
72 PRK09961 exoaminopeptidase; Pr 92.5 0.17 3.6E-06 42.0 3.9 39 10-56 185-223 (344)
73 PRK09864 putative peptidase; P 92.5 0.14 3.1E-06 42.5 3.5 39 11-57 193-231 (356)
74 PRK15026 aminoacyl-histidine d 92.4 0.53 1.1E-05 40.9 7.0 45 138-182 351-395 (485)
75 COG1363 FrvX Cellulase M and r 91.3 0.18 3.9E-06 41.8 2.8 42 8-57 197-238 (355)
76 PRK10199 alkaline phosphatase 90.9 0.18 4E-06 41.6 2.5 34 2-40 156-189 (346)
77 TIGR03106 trio_M42_hydro hydro 87.6 0.36 7.7E-06 40.0 1.9 26 2-27 196-221 (343)
78 cd06406 PB1_P67 A PB1 domain i 75.1 7 0.00015 25.1 4.0 34 145-178 9-42 (80)
79 COG2234 Iap Predicted aminopep 71.1 3.8 8.2E-05 34.9 2.8 35 2-41 241-275 (435)
80 cd06411 PB1_p51 The PB1 domain 53.2 37 0.0008 21.7 4.2 35 144-178 4-38 (78)
81 KOG2195 Transferrin receptor a 52.8 11 0.00023 34.5 2.3 34 4-40 388-421 (702)
82 KOG2194 Aminopeptidases of the 52.2 7.8 0.00017 35.8 1.4 50 2-55 176-225 (834)
83 COG4829 CatC1 Muconolactone de 44.2 89 0.0019 20.4 4.9 21 146-167 4-24 (98)
84 cd04870 ACT_PSP_1 CT domains f 42.3 81 0.0018 19.4 5.1 35 142-176 36-70 (75)
85 cd04869 ACT_GcvR_2 ACT domains 41.8 83 0.0018 19.4 4.9 34 143-176 43-76 (81)
86 COG5470 Uncharacterized conser 37.8 46 0.00099 22.1 2.9 52 147-205 8-60 (96)
87 TIGR03884 sel_bind_Methan sele 35.4 1.1E+02 0.0024 19.3 4.2 38 139-176 7-44 (74)
88 PHA02448 hypothetical protein 32.5 1.1E+02 0.0023 21.7 4.2 49 47-95 46-101 (192)
89 PF03822 NAF: NAF domain; Int 27.5 47 0.001 20.2 1.6 26 151-176 35-60 (63)
90 PRK02813 putative aminopeptida 27.1 55 0.0012 28.1 2.5 23 12-34 252-274 (428)
91 cd04871 ACT_PSP_2 ACT domains 25.5 1.5E+02 0.0033 18.8 3.9 34 142-176 46-79 (84)
92 PF05450 Nicastrin: Nicastrin; 24.3 75 0.0016 24.9 2.6 28 9-39 47-74 (234)
93 PF13740 ACT_6: ACT domain; PD 23.9 1.9E+02 0.004 17.8 4.3 36 138-174 35-70 (76)
94 PRK06156 hypothetical protein; 23.5 2.1E+02 0.0045 25.2 5.5 23 126-149 241-263 (520)
95 PF01883 DUF59: Domain of unkn 22.0 1.7E+02 0.0038 17.6 3.6 36 138-173 29-64 (72)
No 1
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.95 E-value=1.3e-26 Score=192.87 Aligned_cols=162 Identities=23% Similarity=0.321 Sum_probs=139.2
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCCceeeecccEEEEEEEEeecCCc
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Ha 81 (205)
+.|++.+..++++|.|+|++|||.|+ .|+++|++++.+++ +|++++.||+...+.++++|..+++|+++|+++|+
T Consensus 113 ~~l~~~~~~~~~~i~l~~~~dEE~g~---~G~~~~~~~~~~~~--~d~~i~~ep~~~~i~~~~~G~~~~~i~~~G~~~Hs 187 (377)
T PRK08588 113 IELKEQGQLLNGTIRLLATAGEEVGE---LGAKQLTEKGYADD--LDALIIGEPSGHGIVYAHKGSMDYKVTSTGKAAHS 187 (377)
T ss_pred HHHHHcCCCCCCcEEEEEEcccccCc---hhHHHHHhcCccCC--CCEEEEecCCCceeEEEEEEEEEEEEEEEeechhc
Confidence 46777888889999999999999987 79999999876543 57899999988888899999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHH
Q 028674 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (205)
Q Consensus 82 s~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~ 161 (205)
|.|+.|.|||..+++++.++.++..+ +... ....+..+++++.++ +|...|+||++|++++|+|+.|+++.++
T Consensus 188 s~p~~g~nAi~~~~~~l~~l~~~~~~-~~~~-----~~~~~~~t~~v~~i~-gG~~~nvip~~~~~~~d~R~~p~~~~~~ 260 (377)
T PRK08588 188 SMPELGVNAIDPLLEFYNEQKEYFDS-IKKH-----NPYLGGLTHVVTIIN-GGEQVNSVPDEAELEFNIRTIPEYDNDQ 260 (377)
T ss_pred cCCccccCHHHHHHHHHHHHHHHhhh-hccc-----CccCCCCceeeeEEe-CCCcCCcCCCeEEEEEEeccCCCCCHHH
Confidence 99999999999999999999875322 2211 112235788999998 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 028674 162 VMKRLQEYVDDINE 175 (205)
Q Consensus 162 i~~~i~~~i~~~~~ 175 (205)
+.++|++.+++...
T Consensus 261 v~~~i~~~~~~~~~ 274 (377)
T PRK08588 261 VISLLQEIINEVNQ 274 (377)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988653
No 2
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=99.95 E-value=1.5e-26 Score=190.87 Aligned_cols=178 Identities=20% Similarity=0.281 Sum_probs=148.7
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCC----CCcee--e--ecccEEEEEE
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD----KQPCI--G--TGGMIPWKLH 73 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~----~~i~~--~--~~g~~~~~i~ 73 (205)
++|++...+++|+|+|+|||+||.++ |++.|+++|.++++ +|+++..|+.+ +.+.+ | ..+...++++
T Consensus 116 ~~L~~~~~~~~Gtv~~ifQPAEE~~~----Ga~~mi~~G~~~~~-vD~v~g~H~~p~~~~g~v~~~~G~~~aa~d~~~i~ 190 (392)
T COG1473 116 LALAEHKDNLPGTVRLIFQPAEEGGG----GAKAMIEDGVFDDF-VDAVFGLHPGPGLPVGTVALRPGALMAAADEFEIT 190 (392)
T ss_pred HHHHhhhhhCCcEEEEEecccccccc----cHHHHHhcCCcccc-ccEEEEecCCCCCCCceEEeecccceeecceEEEE
Confidence 56777767999999999999999874 89999999999887 89999999954 34432 3 6778899999
Q ss_pred EEeecCCccCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeec
Q 028674 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (205)
Q Consensus 74 ~~G~~~Has~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~ 153 (205)
++|+++|++.|+.++||+..++.++..|+.+..+..+|.. +..++++.++ +|++.||||+++++.+++|.
T Consensus 191 ~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~p~~---------~~vv~vg~~~-aG~a~NVIpd~A~l~gtvR~ 260 (392)
T COG1473 191 FKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDPLD---------SAVVTVGKIE-AGTAANVIPDSAELEGTIRT 260 (392)
T ss_pred EEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccCCcc---------CeEEEEEEec-CCCcCCcCCCeeEEEEEeec
Confidence 9999999999999999999999999999998777666542 4688999998 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhc--chhccCcCCCCCCCCCCC
Q 028674 154 TPFYNVTDVMKRLQEYVDDINEN--IEKLDTRGPVSKYVLPDE 194 (205)
Q Consensus 154 ~~~~~~~~i~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~d~ 194 (205)
+..+..+++.+++++.++.++.. ++.........+++.+|+
T Consensus 261 ~~~~~~~~~~~~i~~ia~g~a~~~g~~~ei~~~~~~p~~~Nd~ 303 (392)
T COG1473 261 FSDEVREKLEARIERIAKGIAAAYGAEAEIDYERGYPPVVNDP 303 (392)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecCCCCCccCCH
Confidence 99888888888888888888764 443333335556666663
No 3
>PRK06915 acetylornithine deacetylase; Validated
Probab=99.94 E-value=1.6e-25 Score=188.92 Aligned_cols=166 Identities=18% Similarity=0.263 Sum_probs=137.7
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCCceeeecccEEEEEEEEeecCCc
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Ha 81 (205)
++|++.+.+++++|.|+|++|||+|+ .|+.+++.++ +.+|++++.||+...++.+++|..+++|+++|+++|+
T Consensus 147 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~G~~~~~~~~----~~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~H~ 219 (422)
T PRK06915 147 EALIESGIELKGDVIFQSVIEEESGG---AGTLAAILRG----YKADGAIIPEPTNMKFFPKQQGSMWFRLHVKGKAAHG 219 (422)
T ss_pred HHHHHcCCCCCCcEEEEEecccccCC---cchHHHHhcC----cCCCEEEECCCCCccceeecccEEEEEEEEEeecccc
Confidence 56777777888999999999999987 6988888765 3578999999988888999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHH
Q 028674 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (205)
Q Consensus 82 s~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~ 161 (205)
|.|+.|+|||..+++++.+++.+...............+..+.+++++.|+ +|...|+||++|++.+|+|++|.++.++
T Consensus 220 s~p~~g~nAi~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~nvvP~~a~~~~d~R~~p~~~~~~ 298 (422)
T PRK06915 220 GTRYEGVSAIEKSMFVIDHLRKLEEKRNDRITDPLYKGIPIPIPINIGKIE-GGSWPSSVPDSVILEGRCGIAPNETIEA 298 (422)
T ss_pred CCCCcCcCHHHHHHHHHHHHHHHHHHhccccCCCcccCCCCCceEeEEEee-CCCCCCccCcEEEEEEEEEECCCCCHHH
Confidence 999999999999999999998764211010000000111224688999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 028674 162 VMKRLQEYVDDINE 175 (205)
Q Consensus 162 i~~~i~~~i~~~~~ 175 (205)
+.++|++.+++++.
T Consensus 299 v~~~i~~~l~~~~~ 312 (422)
T PRK06915 299 AKEEFENWIAELND 312 (422)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
No 4
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.94 E-value=2.2e-25 Score=185.36 Aligned_cols=165 Identities=21% Similarity=0.331 Sum_probs=138.2
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCC-CCCceeeecccEEEEEEEEeecCC
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~-~~~i~~~~~g~~~~~i~~~G~~~H 80 (205)
++|++.+.+++++|.|+|+++||.|+ .|++++++++.++ ++|++++.|++ ...+.++++|..+++|+++|+++|
T Consensus 118 ~~l~~~~~~~~~~i~~~~~~~EE~g~---~G~~~~~~~~~~~--~~d~~i~~~~~~~~~v~~~~~G~~~~~i~~~G~~~H 192 (375)
T TIGR01910 118 KAIREAGIKPNGNIILQSVVDEESGE---AGTLYLLQRGYFK--DADGVLIPEPSGGDNIVIGHKGSIWFKLRVKGKQAH 192 (375)
T ss_pred HHHHHcCCCCCccEEEEEEcCcccCc---hhHHHHHHcCCCC--CCCEEEECCCCCCCceEEEecceEEEEEEEeeeecc
Confidence 56777777889999999999999987 7999999887544 36899999988 477889999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHH
Q 028674 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (205)
Q Consensus 81 as~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~ 160 (205)
+|.|+.|.|||..+++++++|.++......... . ......++++++.++ +|...|+||++|++.+|+|+.|.++.+
T Consensus 193 s~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~--~-~~~~~~~t~~i~~i~-gG~~~nviP~~~~~~~diR~~~~~~~~ 268 (375)
T TIGR01910 193 ASFPQFGVNAIMKLAKLITELNELEEHIYARNS--Y-GFIPGPITFNPGVIK-GGDWVNSVPDYCEFSIDVRIIPEENLD 268 (375)
T ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHhhhccc--c-cccCCCccccceeEE-CCCCcCcCCCEEEEEEEeeeCCCCCHH
Confidence 999999999999999999999876422111000 0 011124788999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 028674 161 DVMKRLQEYVDDINE 175 (205)
Q Consensus 161 ~i~~~i~~~i~~~~~ 175 (205)
++.++|++.+++.+.
T Consensus 269 ~~~~~i~~~~~~~~~ 283 (375)
T TIGR01910 269 EVKQIIEDVVKALSK 283 (375)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988763
No 5
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.94 E-value=3.8e-25 Score=186.88 Aligned_cols=172 Identities=15% Similarity=0.197 Sum_probs=136.5
Q ss_pred ChhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCC-CceeeecccEEEEEEEEeecC
Q 028674 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLF 79 (205)
Q Consensus 1 ~~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-~i~~~~~g~~~~~i~~~G~~~ 79 (205)
+++|++.+..++++|.|+|++|||+|+. .|+.++++++.++...+|++++.||+.. .+.++++|..+++++++|+++
T Consensus 135 ~~~l~~~~~~~~~~v~~~~~~dEE~g~~--~g~~~l~~~~~~~~~~~d~~i~~ep~~~~~i~~~~~G~~~~~i~v~G~~~ 212 (427)
T PRK13013 135 AEAFLAVYPDFAGSIEISGTADEESGGF--GGVAYLAEQGRFSPDRVQHVIIPEPLNKDRICLGHRGVWWAEVETRGRIA 212 (427)
T ss_pred HHHHHHhCCCCCccEEEEEEeccccCCh--hHHHHHHhcCCccccCCCEEEEecCCCCCceEEeeeeEEEEEEEEEcccc
Confidence 3567777778889999999999998762 3788888887655334689999999874 688899999999999999999
Q ss_pred CccCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCc-ccC-CCCCCceEeeeEEecCCCcc----------eeECCeEEE
Q 028674 80 HSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKE-QVY-GFETPSTMKPTQWSYPGGGI----------NQIPGECTV 147 (205)
Q Consensus 80 Has~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~g~i~~~g~~~----------nvip~~~~~ 147 (205)
|+|.|+.|+|||..+++++.++++...+........ ... ......+++++.|+ +|... |+||++|++
T Consensus 213 H~~~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~~~~~~~~~~~n~IPd~a~~ 291 (427)
T PRK13013 213 HGSMPFLGDSAIRHMGAVLAEIEERLFPLLATRRTAMPVVPEGARQSTLNINSIH-GGEPEQDPDYTGLPAPCVADRCRI 291 (427)
T ss_pred ccCCCCcCcCHHHHHHHHHHHHHHHhhhhhhcccccCCCCCcccCCCceeeeEEe-CCCccccccccccccccCCceEEE
Confidence 999999999999999999999976432111100000 000 00124678999998 88666 999999999
Q ss_pred EEEeecCCCCCHHHHHHHHHHHHHHHhh
Q 028674 148 SGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (205)
Q Consensus 148 ~~diR~~~~~~~~~i~~~i~~~i~~~~~ 175 (205)
++|+|++|.++.+++.+++++.+++++.
T Consensus 292 ~idiR~~p~~~~~~v~~~i~~~i~~~~~ 319 (427)
T PRK13013 292 VIDRRFLIEEDLDEVKAEITALLERLKR 319 (427)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988653
No 6
>PLN02280 IAA-amino acid hydrolase
Probab=99.93 E-value=4.5e-25 Score=187.81 Aligned_cols=158 Identities=20% Similarity=0.312 Sum_probs=130.9
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCC--c------eeeecccEEEEEE
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQ--P------CIGTGGMIPWKLH 73 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~--i------~~~~~g~~~~~i~ 73 (205)
++|++.+.+++++|.|+|++|||.| .|+++|+++|.+++ +|+++..|+.... . ....+|..+++|+
T Consensus 199 ~~L~~~~~~~~g~V~~if~pdEE~g----~Ga~~li~~g~~~~--~d~~~~~h~~~~~p~g~ig~~~~~~~~G~~~~~I~ 272 (478)
T PLN02280 199 KILKSREHLLKGTVVLLFQPAEEAG----NGAKRMIGDGALDD--VEAIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAV 272 (478)
T ss_pred HHHHhccccCCceEEEEeccccccc----chHHHHHHCCCCcC--CCEEEEEecCCCCCCceeEecccccccceeEEEEE
Confidence 4567777788999999999999985 59999999988765 5778877764321 1 2234599999999
Q ss_pred EEeecCCccCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeec
Q 028674 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (205)
Q Consensus 74 ~~G~~~Has~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~ 153 (205)
++|+++|+|.|+.|+|||..+++++.+++.+..+...+. .+.+++++.++ ||...|+||++|++.+|+|+
T Consensus 273 v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~~~~~---------~~~tvnvg~I~-GG~~~NvIPd~~~l~~diR~ 342 (478)
T PLN02280 273 ISGKKGRAGSPHHSVDLILAASAAVISLQGIVSREANPL---------DSQVVSVTTMD-GGNNLDMIPDTVVLGGTFRA 342 (478)
T ss_pred EECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcccCCC---------CCcEEEEEEEE-ccCCCCEeCCEEEEEEEEec
Confidence 999999999999999999999999999987643332221 24678999999 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhh
Q 028674 154 TPFYNVTDVMKRLQEYVDDINE 175 (205)
Q Consensus 154 ~~~~~~~~i~~~i~~~i~~~~~ 175 (205)
++.++.+++.++|++.++..+.
T Consensus 343 ~~~e~~e~l~~~I~~~~~~~a~ 364 (478)
T PLN02280 343 FSNTSFYQLLKRIQEVIVEQAG 364 (478)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988653
No 7
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.93 E-value=1.6e-24 Score=179.38 Aligned_cols=161 Identities=19% Similarity=0.225 Sum_probs=133.5
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCCceeeecccEEEEEEEEeecCCc
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Ha 81 (205)
++|++. +++++|.|+|++|||.|+ .|++++++++. +.+|++++.||+...+..+++|..+++|+++|+++|+
T Consensus 111 ~~l~~~--~~~~~v~~~~~~~EE~g~---~G~~~~~~~~~---~~~d~~i~~ep~~~~~~~~~~G~~~~~v~v~G~~~Hs 182 (364)
T TIGR01892 111 PDLAAE--QLKKPLHLALTADEEVGC---TGAPKMIEAGA---GRPRHAIIGEPTRLIPVRAHKGYASAEVTVRGRSGHS 182 (364)
T ss_pred HHHHhc--CcCCCEEEEEEeccccCC---cCHHHHHHhcC---CCCCEEEECCCCCceeEEeeceEEEEEEEEEcccccc
Confidence 456554 467899999999999987 79999998864 3578999999988777789999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCC-CCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHH
Q 028674 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE-TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (205)
Q Consensus 82 s~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~ 160 (205)
+.|+.|.|||..+++++.+|.++... ..... ....+. ..++++++.++ +|...|+||++|++.+|+|++|+++.+
T Consensus 183 ~~p~~g~nAi~~~~~~i~~l~~~~~~-~~~~~--~~~~~~~~~~~~~i~~i~-gg~~~nviP~~~~~~~diR~~p~~~~~ 258 (364)
T TIGR01892 183 SYPDSGVNAIFRAGRFLQRLVHLADT-LLRED--LDEGFTPPYTTLNIGVIQ-GGKAVNIIPGACEFVFEWRPIPGMDPE 258 (364)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHHH-hccCC--CCccCCCCCceEEEeeee-cCCCCcccCCeEEEEEEeecCCCCCHH
Confidence 99999999999999999999865321 11000 001121 23688999998 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 028674 161 DVMKRLQEYVDDIN 174 (205)
Q Consensus 161 ~i~~~i~~~i~~~~ 174 (205)
++.++|++.++.+.
T Consensus 259 ~v~~~i~~~~~~~~ 272 (364)
T TIGR01892 259 ELLQLLETIAQALV 272 (364)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
No 8
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.93 E-value=1.3e-24 Score=181.19 Aligned_cols=163 Identities=20% Similarity=0.315 Sum_probs=133.4
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCCceeeecccEEEEEEEEeecCCc
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Ha 81 (205)
++|++. .++++|.|+|++|||.|+ .|+++++++.......+|+++.++|+...++++++|..+++|+++|+++|+
T Consensus 117 ~~l~~~--~~~~~i~~~~~~dEE~g~---~G~~~l~~~~~~~~~~~d~~i~~ep~~~~~~~~~~G~~~~~i~v~G~~~Hs 191 (385)
T PRK07522 117 PELAAA--PLRRPLHLAFSYDEEVGC---LGVPSMIARLPERGVKPAGCIVGEPTSMRPVVGHKGKAAYRCTVRGRAAHS 191 (385)
T ss_pred HHHHhC--CCCCCEEEEEEeccccCC---ccHHHHHHHhhhcCCCCCEEEEccCCCCeeeeeecceEEEEEEEEeecccc
Confidence 455554 467899999999999987 799999986432345678999999988888999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCC-CceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHH
Q 028674 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (205)
Q Consensus 82 s~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~ 160 (205)
+.|+.|.||+..+++++.+|+++..+...... ....+.. .++++++.++ +|...|+||++|++.+|+|+++.++.+
T Consensus 192 ~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~--~~~~~~~~~~t~~i~~i~-gG~~~nviP~~a~~~~diR~~~~~~~~ 268 (385)
T PRK07522 192 SLAPQGVNAIEYAARLIAHLRDLADRLAAPGP--FDALFDPPYSTLQTGTIQ-GGTALNIVPAECEFDFEFRNLPGDDPE 268 (385)
T ss_pred CCCccCcCHHHHHHHHHHHHHHHHHHHhhcCC--CCcCCCCCcceeEEeeee-cCccccccCCceEEEEEEccCCCCCHH
Confidence 99999999999999999999875322111000 0011211 2678999998 898999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028674 161 DVMKRLQEYVDD 172 (205)
Q Consensus 161 ~i~~~i~~~i~~ 172 (205)
++.++|++.+++
T Consensus 269 ~i~~~i~~~i~~ 280 (385)
T PRK07522 269 AILARIRAYAEA 280 (385)
T ss_pred HHHHHHHHHHHh
Confidence 999999999987
No 9
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.93 E-value=2.3e-24 Score=179.67 Aligned_cols=162 Identities=22% Similarity=0.236 Sum_probs=133.1
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCCceeeecccEEEEEEEEeecCCc
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Ha 81 (205)
++|++. .++++|.|+|++|||+|+ .|++++++++. +.+|+++++||+...++++++|..+++|+++|+++|+
T Consensus 124 ~~l~~~--~~~~~i~~~~~~~EE~g~---~G~~~~~~~~~---~~~d~~i~~ep~~~~~~~~~~G~~~~~i~v~G~~~H~ 195 (383)
T PRK05111 124 RDIDLT--KLKKPLYILATADEETSM---AGARAFAEATA---IRPDCAIIGEPTSLKPVRAHKGHMSEAIRITGQSGHS 195 (383)
T ss_pred HHHhhc--CCCCCeEEEEEeccccCc---ccHHHHHhcCC---CCCCEEEEcCCCCCceeecccceEEEEEEEEeechhc
Confidence 445543 467899999999999987 79999998754 3468999999998878889999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCC-CCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHH
Q 028674 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGF-ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (205)
Q Consensus 82 s~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~ 160 (205)
|.|+.|.|||..+++++.++..+......... ...+ ...++++++.++ +|...|+||++|++.+|+|++|+++.+
T Consensus 196 ~~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~---~~~~~~~~~t~~i~~i~-gg~~~NvVP~~~~~~~diR~~p~~~~~ 271 (383)
T PRK05111 196 SDPALGVNAIELMHDVIGELLQLRDELQERYH---NPAFTVPYPTLNLGHIH-GGDAPNRICGCCELHFDIRPLPGMTLE 271 (383)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHHHHhccCC---CccCCCCCCceeEeeee-cCCcCcccCCceEEEEEEecCCCCCHH
Confidence 99999999999999999998765311101000 0111 124678999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 028674 161 DVMKRLQEYVDDINE 175 (205)
Q Consensus 161 ~i~~~i~~~i~~~~~ 175 (205)
++.++|++.++++..
T Consensus 272 ~v~~~i~~~i~~~~~ 286 (383)
T PRK05111 272 DLRGLLREALAPVSE 286 (383)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988754
No 10
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=99.93 E-value=1.9e-24 Score=179.51 Aligned_cols=166 Identities=20% Similarity=0.225 Sum_probs=133.0
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCC-----CceeeecccEEEEEEEEe
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~i~~~G 76 (205)
+.|++.+.+++++|+|+|++|||.++. .|++.+++........+|++++.||+.. .++.+++|..+++++++|
T Consensus 109 ~~l~~~~~~~~~~v~~~~~~dEE~~~~--~G~~~~~~~~~~~~~~~d~~i~~ep~~~~~~~~~i~~~~~G~~~~~v~v~G 186 (370)
T TIGR01246 109 ERFVKKNPDHKGSISLLITSDEEGTAI--DGTKKVVETLMARDELIDYCIVGEPSSVKKLGDVIKNGRRGSITGNLTIKG 186 (370)
T ss_pred HHHHHhcCCCCCcEEEEEEeccccCCC--cCHHHHHHHHHhcCCCCCEEEEcCCCCcccCCceEEEeeeEEEEEEEEEEc
Confidence 456666677889999999999998652 4999888753223345799999998642 367789999999999999
Q ss_pred ecCCccCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCC-cceeECCeEEEEEEeecCC
Q 028674 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTP 155 (205)
Q Consensus 77 ~~~Has~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~-~~nvip~~~~~~~diR~~~ 155 (205)
+++|++.|+.|.||+..++++++.+.....+. ...+..+.+++++.++ +|. ..|++|++|++.+|+|++|
T Consensus 187 ~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~--------~~~~~~~~t~~i~~i~-~g~~~~nvvP~~~~~~~diR~~~ 257 (370)
T TIGR01246 187 IQGHVAYPHLANNPIHKAAPALAELTAIKWDE--------GNEFFPPTSLQITNIH-AGTGANNVIPGELYVQFNLRFST 257 (370)
T ss_pred cCcccCCcccCCCHHHHHHHHHHHHhhhhhcc--------CCccCCCCceEeeeee-cCCCCCcccCCceEEEEEEecCC
Confidence 99999999999999999999999987642211 0112235688999998 665 6799999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcch
Q 028674 156 FYNVTDVMKRLQEYVDDINENIE 178 (205)
Q Consensus 156 ~~~~~~i~~~i~~~i~~~~~~~~ 178 (205)
.++.+++.+.|++.+++....++
T Consensus 258 ~~~~~~v~~~i~~~~~~~~~~~~ 280 (370)
T TIGR01246 258 EVSDEILKQRVEAILDQHGLDYD 280 (370)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999887544443
No 11
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.93 E-value=3.4e-24 Score=178.20 Aligned_cols=166 Identities=21% Similarity=0.216 Sum_probs=134.1
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCC-----CceeeecccEEEEEEEEe
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~i~~~G 76 (205)
+.|++.+.+++++|+|+|++|||.++. .|++.+++.....+..+|++++.||+.. .+.++++|..+++|+++|
T Consensus 112 ~~l~~~~~~~~~~i~~~~~~~EE~~~~--~G~~~~~~~~~~~~~~~d~~i~~ep~~~~~~~~~i~~g~~g~~~~~i~v~G 189 (375)
T PRK13009 112 ERFVAAHPDHKGSIAFLITSDEEGPAI--NGTVKVLEWLKARGEKIDYCIVGEPTSTERLGDVIKNGRRGSLTGKLTVKG 189 (375)
T ss_pred HHHHHhcCCCCceEEEEEEeecccccc--cCHHHHHHHHHHcCcCCCEEEEcCCCcccCCCCeEEEecceEEEEEEEEEe
Confidence 456677778889999999999998642 4899988754333446799999998753 366789999999999999
Q ss_pred ecCCccCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCC-cceeECCeEEEEEEeecCC
Q 028674 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTP 155 (205)
Q Consensus 77 ~~~Has~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~-~~nvip~~~~~~~diR~~~ 155 (205)
+++|+|.|+.|.||+..+++++.+|.....+.. ..+..+.+++++.++ +|. ..|++|++|++.+|+|++|
T Consensus 190 ~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~~--------~~~~~~~~~~i~~i~-~G~~~~nvip~~~~~~~diR~~~ 260 (375)
T PRK13009 190 VQGHVAYPHLADNPIHLAAPALAELAATEWDEG--------NEFFPPTSLQITNID-AGTGATNVIPGELEAQFNFRFST 260 (375)
T ss_pred cCcccCCCCcccCHHHHHHHHHHHHHhhhccCC--------CccCCCceEEEEEEe-cCCCCCcccCCcEEEEEEEecCC
Confidence 999999999999999999999999976532111 112235688999998 665 6899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcch
Q 028674 156 FYNVTDVMKRLQEYVDDINENIE 178 (205)
Q Consensus 156 ~~~~~~i~~~i~~~i~~~~~~~~ 178 (205)
..+.+++.++|++.+++...+++
T Consensus 261 ~~~~e~i~~~i~~~~~~~~~~~~ 283 (375)
T PRK13009 261 EHTAESLKARVEAILDKHGLDYT 283 (375)
T ss_pred CCCHHHHHHHHHHHHHhcCCCeE
Confidence 99999999999999987544444
No 12
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.92 E-value=4.5e-24 Score=178.53 Aligned_cols=162 Identities=21% Similarity=0.276 Sum_probs=131.9
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCC-CceeeecccEEEEEEEEeecCC
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFH 80 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-~i~~~~~g~~~~~i~~~G~~~H 80 (205)
+.|++.+ +++|.|+|++|||+|+ .|++++++++.+ ++|++++.|++.. .++.+++|..+++|+++|+++|
T Consensus 127 ~~l~~~~---~~~v~~~~~~~EE~g~---~G~~~~~~~~~~---~~d~~i~~~~~~~~~i~~~~~G~~~~~i~v~G~~~H 197 (394)
T PRK08651 127 ERLDPAG---DGNIELAIVPDEETGG---TGTGYLVEEGKV---TPDYVIVGEPSGLDNICIGHRGLVWGVVKVYGKQAH 197 (394)
T ss_pred HHHHhcC---CCCEEEEEecCccccc---hhHHHHHhccCC---CCCEEEEecCCCCCceEEecccEEEEEEEEEEeccc
Confidence 4455543 7899999999999987 699999987643 3689999999876 7889999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeE--EecCCCcceeECCeEEEEEEeecCCCCC
Q 028674 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQ--WSYPGGGINQIPGECTVSGDVRLTPFYN 158 (205)
Q Consensus 81 as~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--i~~~g~~~nvip~~~~~~~diR~~~~~~ 158 (205)
++.|+.|.||+..+++++.+|.+...+...... .......+.+++++. ++ +|...|++|++|++.+|+|++|.++
T Consensus 198 ~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~--~~~~~~~~~~~~ig~~~i~-gG~~~nviP~~a~~~~diR~~~~~~ 274 (394)
T PRK08651 198 ASTPWLGINAFEAAAKIAERLKSSLSTIKSKYE--YDDERGAKPTVTLGGPTVE-GGTKTNIVPGYCAFSIDRRLIPEET 274 (394)
T ss_pred cCCCccccCHHHHHHHHHHHHHHHHHhhhcccc--ccccccCCCceeecceeee-CCCCCCccCCEEEEEEEeeeCCCCC
Confidence 999999999999999999999765322211100 000111235678888 87 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 028674 159 VTDVMKRLQEYVDDINE 175 (205)
Q Consensus 159 ~~~i~~~i~~~i~~~~~ 175 (205)
.+++.+++++.+++++.
T Consensus 275 ~e~i~~~i~~~~~~~~~ 291 (394)
T PRK08651 275 AEEVRDELEALLDEVAP 291 (394)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999988754
No 13
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=99.92 E-value=2.8e-24 Score=178.07 Aligned_cols=158 Identities=21% Similarity=0.323 Sum_probs=129.3
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCC--------ceeeecccEEEEEE
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQ--------PCIGTGGMIPWKLH 73 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~--------i~~~~~g~~~~~i~ 73 (205)
+.|++.+..++++|.|+|++|||.+ .|++++++++.++. .|++++.||+... ...+++|..+++++
T Consensus 103 ~~l~~~~~~~~~~i~~~~~~dEE~~----~G~~~~~~~~~~~~--~d~~i~~e~~~~~~~~~~~~~~~~~~~g~~~~~i~ 176 (363)
T TIGR01891 103 KLLKKLADLLEGTVRLIFQPAEEGG----GGATKMIEDGVLDD--VDAILGLHPDPSIPAGTVGLRPGTIMAAADKFEVT 176 (363)
T ss_pred HHHHhchhhCCceEEEEEeecCcCc----chHHHHHHCCCCCC--cCEEEEECCCCCCCCeEEEECCCcceeecceEEEE
Confidence 3456666678899999999999985 59999998876544 4789998885421 22356888999999
Q ss_pred EEeecCCccCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeec
Q 028674 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (205)
Q Consensus 74 ~~G~~~Has~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~ 153 (205)
++|+++|++.|+.|.||+..+++++++++++..+...+. ...+++++.++ +|...|+||++|++.+|+|+
T Consensus 177 ~~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~---------~~~~~~i~~i~-gG~~~nvvP~~~~~~~diR~ 246 (363)
T TIGR01891 177 IHGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNVDPS---------RPAVVTVGIIE-AGGAPNVIPDKASMSGTVRS 246 (363)
T ss_pred EEeecccccCcccccCHHHHHHHHHHHHHHHhhccCCCC---------CCcEEEEEEEE-cCCCCcEECCeeEEEEEEEe
Confidence 999999999999999999999999999987532221111 13578999998 88899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhh
Q 028674 154 TPFYNVTDVMKRLQEYVDDINE 175 (205)
Q Consensus 154 ~~~~~~~~i~~~i~~~i~~~~~ 175 (205)
+|.++.+++.++|++.+++++.
T Consensus 247 ~~~~~~e~~~~~i~~~~~~~~~ 268 (363)
T TIGR01891 247 LDPEVRDQIIDRIERIVEGAAA 268 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988653
No 14
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=99.92 E-value=4.7e-24 Score=177.29 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=127.6
Q ss_pred cCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCCceeeecccEEEEEEEEeecCCccCCCCC
Q 028674 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKA 87 (205)
Q Consensus 8 ~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Has~p~~g 87 (205)
+..++++|.|+|++|||+++. ..|+..++++.. ..+.+|++|++||+...++++++|..+++|+++|+++|+|.|+.|
T Consensus 124 ~~~~~~~i~~~~~~dEE~~~~-~~G~~~~~~~~~-~~~~~d~~iv~Ept~~~i~~g~~G~~~~~i~v~G~~~H~s~p~~g 201 (373)
T TIGR01900 124 ETELKHDLTLIAYDCEEVAAE-KNGLGHIRDAHP-DWLAADFAIIGEPTGGGIEAGCNGNIRFDVTAHGVAAHSARAWLG 201 (373)
T ss_pred ccCCCCCEEEEEEecccccCC-CCCHHHHHHhCc-ccccCCEEEEECCCCCcccccceeeEEEEEEEEeeccccCCCCCC
Confidence 456889999999999998631 039999987642 223578999999999899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHHH
Q 028674 88 INPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQ 167 (205)
Q Consensus 88 ~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~ 167 (205)
.|||..+++++.+|+.+...... . ..+....+++++.++ +|...|+||++|++++|+|++|+++.+++.+.|+
T Consensus 202 ~NAi~~~~~~i~~l~~l~~~~~~-~-----~~~~~~~t~~v~~I~-GG~~~nvVP~~a~~~~diR~~p~~~~e~~~~~i~ 274 (373)
T TIGR01900 202 DNAIHKAADIINKLAAYEAAEVN-I-----DGLDYREGLNATFCE-GGKANNVIPDEARMHLNFRFAPDKDLAEAKALMM 274 (373)
T ss_pred CCHHHHHHHHHHHHHHhhccccc-c-----cCCcccceEEEEEEe-CCCCCcccCCeEEEEEEEecCCCcCHHHHHHHHH
Confidence 99999999999999875321111 0 011123578999998 9999999999999999999999999999999997
Q ss_pred HHHHH
Q 028674 168 EYVDD 172 (205)
Q Consensus 168 ~~i~~ 172 (205)
+.+++
T Consensus 275 ~~~~~ 279 (373)
T TIGR01900 275 GADAG 279 (373)
T ss_pred hhhhh
Confidence 66433
No 15
>PLN02693 IAA-amino acid hydrolase
Probab=99.92 E-value=5.3e-24 Score=179.89 Aligned_cols=155 Identities=21% Similarity=0.340 Sum_probs=123.5
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCC----CCcee----eecccEEEEEE
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD----KQPCI----GTGGMIPWKLH 73 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~----~~i~~----~~~g~~~~~i~ 73 (205)
++|++.+.+++++|.|+|++|||. + .|++.|++++.++. .|+++..|..+ +.+.. .++|..+++|+
T Consensus 149 ~~L~~~~~~~~g~V~~if~pdEE~-~---~Ga~~~i~~g~~~~--~~~iig~h~~p~~~~g~~~~~~g~~~~G~~~~~i~ 222 (437)
T PLN02693 149 KILQEHRHHLQGTVVLIFQPAEEG-L---SGAKKMREEGALKN--VEAIFGIHLSPRTPFGKAASRAGSFMAGAGVFEAV 222 (437)
T ss_pred HHHHhCcccCCceEEEEEEEcccc-h---hhHHHHHHCCCCCC--CCEEEEEecCCCCCCeeEEeccCcccccceEEEEE
Confidence 567777767889999999999994 4 59999999987654 35555544432 22222 25788899999
Q ss_pred EEeecCCccCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeec
Q 028674 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (205)
Q Consensus 74 ~~G~~~Has~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~ 153 (205)
++|+++|+|.|+.|+|||..+++++.+++++..+...+. .+.++++|.++ ||...|+||++|++.+|+|+
T Consensus 223 v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~~~~~---------~~~ti~vg~i~-GG~~~NvVPd~a~~~~diR~ 292 (437)
T PLN02693 223 ITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPL---------DSKVVTVSKVN-GGNAFNVIPDSITIGGTLRA 292 (437)
T ss_pred EEcccccCCCCCCCcCHHHHHHHHHHHHHHHhcccCCCC---------CCcEEEEEEEE-cCCCCceECCeEEEEEEEec
Confidence 999999999999999999999999999988643322221 24788999998 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 028674 154 TPFYNVTDVMKRLQEYVDDIN 174 (205)
Q Consensus 154 ~~~~~~~~i~~~i~~~i~~~~ 174 (205)
.++ .+++.++|++.++.++
T Consensus 293 ~~~--~~~i~~~i~~i~~~~a 311 (437)
T PLN02693 293 FTG--FTQLQQRIKEIITKQA 311 (437)
T ss_pred CCH--HHHHHHHHHHHHHHHH
Confidence 986 4678888888888764
No 16
>PRK08737 acetylornithine deacetylase; Provisional
Probab=99.92 E-value=6.6e-24 Score=175.74 Aligned_cols=151 Identities=13% Similarity=0.085 Sum_probs=124.7
Q ss_pred CcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCCceeeecccEEEEEEEEeecCCccCC-CCCCC
Q 028674 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLP-HKAIN 89 (205)
Q Consensus 11 ~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Has~p-~~g~N 89 (205)
+.++|.|+|++|||.|+. .|++.+++.+. .+|+++++||+...++++++|..+++++++|+++|+|.| +.|+|
T Consensus 117 ~~~~v~~~~~~dEE~g~~--~g~~~~~~~~~----~~~~~iv~Ept~~~~~~~~kG~~~~~v~v~Gk~aHas~p~~~G~N 190 (364)
T PRK08737 117 GDGDAAFLFSSDEEANDP--RCVAAFLARGI----PYEAVLVAEPTMSEAVLAHRGISSVLMRFAGRAGHASGKQDPSAS 190 (364)
T ss_pred cCCCEEEEEEcccccCch--hhHHHHHHhCC----CCCEEEEcCCCCceeEEecceeEEEEEEEEeeccccCCCcccCCC
Confidence 467999999999998762 48888988753 468999999999889999999999999999999999998 68999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHHHHH
Q 028674 90 PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEY 169 (205)
Q Consensus 90 Ai~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~ 169 (205)
||..+++++.++.+.......+.. .. ..+.+++++.++ +|...|+||++|++++|+|++|+++.+++.++|++.
T Consensus 191 AI~~~~~~l~~~~~~~~~~~~~~~----~~-~~~~t~~vg~i~-GG~~~NvVP~~a~~~~d~R~~p~~~~e~v~~~i~~~ 264 (364)
T PRK08737 191 ALHQAMRWGGQALDHVESLAHARF----GG-LTGLRFNIGRVE-GGIKANMIAPAAELRFGFRPLPSMDVDGLLATFAGF 264 (364)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcc----CC-CCCCceEEeeEe-cCCCCCcCCCceEEEEEeeeCCCCCHHHHHHHHHHH
Confidence 999999999886544221111100 00 113588999999 999999999999999999999999999999999877
Q ss_pred HHHH
Q 028674 170 VDDI 173 (205)
Q Consensus 170 i~~~ 173 (205)
++..
T Consensus 265 ~~~~ 268 (364)
T PRK08737 265 AEPA 268 (364)
T ss_pred HHHc
Confidence 7653
No 17
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.92 E-value=8.5e-24 Score=173.99 Aligned_cols=149 Identities=21% Similarity=0.292 Sum_probs=124.9
Q ss_pred CcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCCceeeecccEEEEEEEEeecCCccCCCCCCCH
Q 028674 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINP 90 (205)
Q Consensus 11 ~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Has~p~~g~NA 90 (205)
.+++|.|+|++|||.|+ .|++++++. ..+|++++.||+...+.++++|..+++|+++|+++|++.|+.|.||
T Consensus 107 ~~~~v~~~~~~dEE~g~---~G~~~~~~~-----~~~d~~i~~ep~~~~i~~~~~g~~~~~i~~~G~~~H~s~p~~g~nA 178 (347)
T PRK08652 107 EDLNVGIAFVSDEEEGG---RGSALFAER-----YRPKMAIVLEPTDLKVAIAHYGNLEAYVEVKGKPSHGACPESGVNA 178 (347)
T ss_pred cCCCEEEEEecCcccCC---hhHHHHHHh-----cCCCEEEEecCCCCceeeecccEEEEEEEEEeeecccCCCCcCcCH
Confidence 45699999999999987 799999875 2358999999988888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHHHHHH
Q 028674 91 LELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 170 (205)
Q Consensus 91 i~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i 170 (205)
|..+++++.++..+.... .. .+. .+++++.++ +|...|++|++|++++|+|+++.++.+++.+++++.+
T Consensus 179 i~~~a~~i~~l~~~~~~~-~~-------~~~--~~~~~~~i~-gg~~~nviP~~~~~~~diR~~~~~~~~~v~~~i~~~~ 247 (347)
T PRK08652 179 IEKAFEMLEKLKELLKAL-GK-------YFD--PHIGIQEII-GGSPEYSIPALCRLRLDARIPPEVEVEDVLDEIDPIL 247 (347)
T ss_pred HHHHHHHHHHHHHHHHhh-hc-------ccC--CCCcceeee-cCCCCCccCCcEEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 999999999998753211 10 011 234667787 8888999999999999999999999999999999999
Q ss_pred HHHhhcch
Q 028674 171 DDINENIE 178 (205)
Q Consensus 171 ~~~~~~~~ 178 (205)
++...+++
T Consensus 248 ~~~~v~~~ 255 (347)
T PRK08652 248 DEYTVKYE 255 (347)
T ss_pred HhcCceEE
Confidence 87544343
No 18
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.92 E-value=1.4e-23 Score=173.04 Aligned_cols=156 Identities=20% Similarity=0.257 Sum_probs=128.8
Q ss_pred CCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCCceeeecccEEEEEEEEeecCCccCCCCCCC
Q 028674 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAIN 89 (205)
Q Consensus 10 ~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Has~p~~g~N 89 (205)
+++++|.|+|++|||+++.. .|+..+++... ..+++|+++++||+...++++++|..+++|+++|+++|+|.|+.|.|
T Consensus 112 ~~~~~i~~~~~~~EE~~~~~-~G~~~~~~~~~-~~~~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~n 189 (352)
T PRK13007 112 EPAHDLTLVFYDCEEVEAEA-NGLGRLAREHP-EWLAGDFAILLEPTDGVIEAGCQGTLRVTVTFHGRRAHSARSWLGEN 189 (352)
T ss_pred ccCCCeEEEEEecccccCCc-ccHHHHHHhcc-cccCCCEEEEecCCCCceEeeccceEEEEEEEEecccccCCCccCcC
Confidence 57889999999999986411 38888886532 23567999999998888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHHHHH
Q 028674 90 PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEY 169 (205)
Q Consensus 90 Ai~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~ 169 (205)
|+..+++++.+++.+..+.... . +.....+++++.++ +|...|+||++|++++|+|++|+++.+++.++|++.
T Consensus 190 Ai~~~~~~i~~l~~~~~~~~~~----~--~~~~~~~~~~~~i~-gG~~~nviP~~a~~~~diR~~p~~~~~~v~~~i~~~ 262 (352)
T PRK13007 190 AIHKAAPVLARLAAYEPREVVV----D--GLTYREGLNAVRIS-GGVAGNVIPDECVVNVNYRFAPDRSLEEALAHVREV 262 (352)
T ss_pred HHHHHHHHHHHHHHhccccccc----C--CCCccceeEeEeEe-cCCcCccCCCeEEEEEEEeeCCCCCHHHHHHHHHHH
Confidence 9999999999998753221110 0 11113578899998 999999999999999999999999999999999999
Q ss_pred HHHHh
Q 028674 170 VDDIN 174 (205)
Q Consensus 170 i~~~~ 174 (205)
+++..
T Consensus 263 ~~~~~ 267 (352)
T PRK13007 263 FDGFA 267 (352)
T ss_pred hcccc
Confidence 87764
No 19
>PRK07338 hypothetical protein; Provisional
Probab=99.92 E-value=6.9e-24 Score=177.91 Aligned_cols=153 Identities=15% Similarity=0.104 Sum_probs=131.9
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCC--CCceeeecccEEEEEEEEeecC
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~--~~i~~~~~g~~~~~i~~~G~~~ 79 (205)
++|++.+.+++++|.|+|++|||.|+ .|++.+++++. . .++++++.||+. +.+..+++|..+++++++|+++
T Consensus 142 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~~~~~~-~--~~~~~i~~ep~~~~~~v~~~~kG~~~~~v~v~G~~a 215 (402)
T PRK07338 142 LAFERSPLADKLGYDVLINPDEEIGS---PASAPLLAELA-R--GKHAALTYEPALPDGTLAGARKGSGNFTIVVTGRAA 215 (402)
T ss_pred HHHHhcCCCCCCCEEEEEECCcccCC---hhhHHHHHHHh-c--cCcEEEEecCCCCCCcEEeecceeEEEEEEEEeEcc
Confidence 56777777788899999999999987 69999988753 2 357899999974 5677889999999999999999
Q ss_pred CccC-CCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCC
Q 028674 80 HSGL-PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (205)
Q Consensus 80 Has~-p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~ 158 (205)
|++. |+.|.|||..+++++++|+++.. .. ...+++++.++ +|...|+||++|++++|+|+.|+++
T Consensus 216 Hs~~~p~~g~nAi~~~~~~i~~l~~l~~-~~------------~~~t~~vg~i~-gG~~~nvVP~~a~~~~d~R~~~~~~ 281 (402)
T PRK07338 216 HAGRAFDEGRNAIVAAAELALALHALNG-QR------------DGVTVNVAKID-GGGPLNVVPDNAVLRFNIRPPTPED 281 (402)
T ss_pred cCCCCcccCccHHHHHHHHHHHHHhhhc-cC------------CCcEEEEEEEe-cCCCCceeccccEEEEEeccCCHHH
Confidence 9995 89999999999999999976532 11 13688999998 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 028674 159 VTDVMKRLQEYVDDIN 174 (205)
Q Consensus 159 ~~~i~~~i~~~i~~~~ 174 (205)
.+++.++|++.+++.+
T Consensus 282 ~~~v~~~i~~~~~~~~ 297 (402)
T PRK07338 282 AAWAEAELKKLIAQVN 297 (402)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999998865
No 20
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.92 E-value=9.7e-24 Score=177.44 Aligned_cols=151 Identities=23% Similarity=0.246 Sum_probs=130.6
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCC--CCceeeecccEEEEEEEEeecC
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~--~~i~~~~~g~~~~~i~~~G~~~ 79 (205)
++|++.+.+++++|.|+|++|||.|+ .|++.++++.. . ++|++|+.||+. +.++++++|..+++++++|+++
T Consensus 149 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~G~~~~~~~~~-~--~~d~~i~~ep~~~~~~v~~~~~G~~~~~v~v~G~~~ 222 (410)
T PRK06133 149 KILQQLGFKDYGTLTVLFNPDEETGS---PGSRELIAELA-A--QHDVVFSCEPGRAKDALTLATSGIATALLEVKGKAS 222 (410)
T ss_pred HHHHHcCCCCCCCEEEEEECCcccCC---ccHHHHHHHHh-c--cCCEEEEeCCCCCCCCEEEeccceEEEEEEEEeecc
Confidence 45777777788999999999999987 69999997643 2 468999999976 4688899999999999999999
Q ss_pred Ccc-CCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCC
Q 028674 80 HSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (205)
Q Consensus 80 Has-~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~ 158 (205)
|++ .|+.|.||+..+++++..+.++.. +. ...+++++.++ +|...|+||++|++.+|+|++|.++
T Consensus 223 Hsg~~p~~g~nAi~~~~~~i~~l~~~~~----~~---------~~~t~~~~~i~-gG~~~nvIP~~~~~~~diR~~~~~~ 288 (410)
T PRK06133 223 HAGAAPELGRNALYELAHQLLQLRDLGD----PA---------KGTTLNWTVAK-AGTNRNVIPASASAQADVRYLDPAE 288 (410)
T ss_pred ccCCCcccCcCHHHHHHHHHHHHHhccC----CC---------CCeEEEeeEEE-CCCCCceeCCccEEEEEEEECCHHH
Confidence 975 799999999999999999876421 11 13678999998 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028674 159 VTDVMKRLQEYVDD 172 (205)
Q Consensus 159 ~~~i~~~i~~~i~~ 172 (205)
.+++.++|++.+++
T Consensus 289 ~~~v~~~i~~~~~~ 302 (410)
T PRK06133 289 FDRLEADLQEKVKN 302 (410)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999987
No 21
>PRK13004 peptidase; Reviewed
Probab=99.91 E-value=7.1e-23 Score=171.67 Aligned_cols=159 Identities=15% Similarity=0.160 Sum_probs=130.6
Q ss_pred ChhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCCceeeecccEEEEEEEEeecCC
Q 028674 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFH 80 (205)
Q Consensus 1 ~~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~H 80 (205)
|++|++.+..++++|.|+|++|||.++ |.|+++++++.. +.+|++++.|++...+.++++|..+++++++|+++|
T Consensus 122 ~~~l~~~~~~~~~~i~~~~~~~EE~~~--g~~~~~~~~~~~---~~~d~~i~~e~~~~~i~~~~~G~~~~~v~v~G~~~H 196 (399)
T PRK13004 122 AKIIKDLGLDDEYTLYVTGTVQEEDCD--GLCWRYIIEEDK---IKPDFVVITEPTDLNIYRGQRGRMEIRVETKGVSCH 196 (399)
T ss_pred HHHHHhcCCCCCCeEEEEEEcccccCc--chhHHHHHHhcC---CCCCEEEEccCCCCceEEecceEEEEEEEEeccccc
Confidence 367788887889999999999999643 157888887632 457899999999888999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHH
Q 028674 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (205)
Q Consensus 81 as~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~ 160 (205)
++.|+.|.|||..+++++.++..+... .. ...+.++.+++++.+..++...|++|++|++++|+|++|.++.+
T Consensus 197 a~~p~~g~nAi~~~~~~i~~l~~~~~~-~~------~~~~~~~~~~~v~~i~~g~~~~nvvP~~~~~~~diR~~~~~~~~ 269 (399)
T PRK13004 197 GSAPERGDNAIYKMAPILNELEELNPN-LK------EDPFLGKGTLTVSDIFSTSPSRCAVPDSCAISIDRRLTVGETWE 269 (399)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHhhccc-cc------cCCcCCCceEEEeeeecCCCCCCccCCEEEEEEEEcCCCCCCHH
Confidence 999999999999999999999875321 00 01122345778898873345899999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 028674 161 DVMKRLQEYVD 171 (205)
Q Consensus 161 ~i~~~i~~~i~ 171 (205)
++.+++++.+.
T Consensus 270 ~v~~~i~~~~~ 280 (399)
T PRK13004 270 SVLAEIRALPA 280 (399)
T ss_pred HHHHHHHHHHh
Confidence 99999998843
No 22
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.91 E-value=3.7e-23 Score=174.06 Aligned_cols=159 Identities=19% Similarity=0.206 Sum_probs=126.6
Q ss_pred hhhhcccCCCcccEEEEEeeccCcC-----CCCCccHHHHHHccc--------------------ccCCCCCCEEEe--c
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDALVKDGL--------------------LNKLKGGPLYWI--D 54 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g-----~~~~~G~~~~~~~~~--------------------~~~~~~d~~i~~--e 54 (205)
+.|++.+..++++|.|++++|||.+ + .|++.++++.. ..++++|+++++ |
T Consensus 105 ~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~e 181 (413)
T PRK09290 105 RTLNERGIRPRRPIEVVAFTNEEGSRFGPAM---LGSRVFTGALTPEDALALRDADGVSFAEALAAIGYDGDEAVGAARA 181 (413)
T ss_pred HHHHHcCCCCCCCeEEEEEcCCccccccCcc---ccHHHHHcccCHHHHHhccCCCCCCHHHHHHHcCCChhhccccccC
Confidence 5677788888999999999999984 3 58887764321 124566777654 4
Q ss_pred CCC---------------------CCceeeecccEEEEEEEEeecCCcc-CC-CCCCCHHHHHHHHHHHHHHHhhcCCCC
Q 028674 55 TAD---------------------KQPCIGTGGMIPWKLHVTGKLFHSG-LP-HKAINPLELAMEALKVIQTRFYKDFPP 111 (205)
Q Consensus 55 ~~~---------------------~~i~~~~~g~~~~~i~~~G~~~Has-~p-~~g~NAi~~l~~~l~~l~~~~~~~~~~ 111 (205)
|+. ..++.+++|..+++|+++|+++|+| .| +.|+|||..+++++++|+.+..+. .
T Consensus 182 pt~~~~~~~~~~~~~~~~e~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~~-~- 259 (413)
T PRK09290 182 RRDIKAFVELHIEQGPVLEAEGLPIGVVTGIVGQRRYRVTFTGEANHAGTTPMALRRDALLAAAEIILAVERIAAAH-G- 259 (413)
T ss_pred CCCccEEEEEEeccCHHHHHCCCcEEEEeeeeccEEEEEEEEEECCCCCCCCchhccCHHHHHHHHHHHHHHHHHhc-C-
Confidence 442 2367899999999999999999988 68 589999999999999998754221 1
Q ss_pred CCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHhh
Q 028674 112 HPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (205)
Q Consensus 112 ~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~ 175 (205)
.+.+++++.++.++...|+||++|++.+|+|++|+++.+++.++|++.+++...
T Consensus 260 ----------~~~~~~~g~i~~g~~~~NvIP~~a~~~~diR~~p~e~~e~v~~~i~~~~~~~~~ 313 (413)
T PRK09290 260 ----------PDLVATVGRLEVKPNSVNVIPGEVTFTLDIRHPDDAVLDALVAELRAAAEAIAA 313 (413)
T ss_pred ----------CCeEEEEEEEEEcCCCCeEECCEEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 135778999984457899999999999999999999999999999999988653
No 23
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=99.91 E-value=8e-23 Score=171.14 Aligned_cols=159 Identities=16% Similarity=0.132 Sum_probs=129.7
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCCceeeecccEEEEEEEEeecCCc
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Ha 81 (205)
+.|++.+..+++++.|++++|||.++ |.|+.++++++. +.+|++++.||+...+..+++|..+++|+++|+++|+
T Consensus 121 ~~l~~~~~~~~~~v~~~~~~dEE~~~--g~~~~~~~~~~~---~~~d~~i~~ep~~~~i~~g~~G~~~~~v~v~G~~~Hs 195 (395)
T TIGR03526 121 KIIKDLGLLDDYTLLVTGTVQEEDCD--GLCWQYIIEEDK---IKPEFVVITEPTDMNIYRGQRGRMEIKVTVKGVSCHG 195 (395)
T ss_pred HHHHHcCCCCCceEEEEEecccccCC--cHhHHHHHhccC---CCCCEEEecCCCCceEEEEcceEEEEEEEEecCCCcc
Confidence 45677777777899999999999532 146777776543 4578999999988888899999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCC-cceeECCeEEEEEEeecCCCCCHH
Q 028674 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTPFYNVT 160 (205)
Q Consensus 82 s~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~-~~nvip~~~~~~~diR~~~~~~~~ 160 (205)
|.|+.|+|||..+++++.+|+.+...... ..+.+..+++++.++ +|. ..|+||++|++++|+|++|+++.+
T Consensus 196 ~~p~~g~nAi~~~~~~i~~l~~~~~~~~~-------~~~~~~~~~~v~~i~-~g~~~~nviP~~~~~~~d~R~~~~~~~~ 267 (395)
T TIGR03526 196 SAPERGDNAIYKMAPILKELSQLNANLVE-------DPFLGKGTLTVSEIF-FSSPSRCAVADGCTISIDRRLTWGETWE 267 (395)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhhhhhcC-------CcccCccceeeeeee-cCCCCCCccCCeEEEEEEEecCCCCCHH
Confidence 99999999999999999999875321101 011124688999998 554 789999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028674 161 DVMKRLQEYVDDI 173 (205)
Q Consensus 161 ~i~~~i~~~i~~~ 173 (205)
++.+.|++.++..
T Consensus 268 ~~~~~i~~~~~~~ 280 (395)
T TIGR03526 268 YALEQIRNLPAVQ 280 (395)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987654
No 24
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.91 E-value=6.4e-23 Score=171.78 Aligned_cols=166 Identities=25% Similarity=0.345 Sum_probs=129.2
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHc--ccccCCCCCCEEEec---CCCCCceeeecccEEEEEEEEe
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKD--GLLNKLKGGPLYWID---TADKQPCIGTGGMIPWKLHVTG 76 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~--~~~~~~~~d~~i~~e---~~~~~i~~~~~g~~~~~i~~~G 76 (205)
++|++.+.+++++|.|+|++|||.|+. .|++++++. +.+.. .|++++.+ ++...+.++++|..+++|+++|
T Consensus 130 ~~l~~~~~~~~~~v~~~~~~dEE~g~~--~g~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~i~~~~~G~~~~~v~v~G 205 (400)
T PRK13983 130 KALMDLGIRPKYNLGLAFVSDEETGSK--YGIQYLLKKHPELFKK--DDLILVPDAGNPDGSFIEIAEKSILWLKFTVKG 205 (400)
T ss_pred HHHHHhCCCCCCcEEEEEEeccccCCc--ccHHHHHhhcccccCC--CCEEEEecCCCCCCceeEEeecceEEEEEEEEe
Confidence 567778888999999999999998862 489999986 33332 46788744 4445578899999999999999
Q ss_pred ecCCccCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCC-CceEeeeEEecCCCcceeECCeEEEEEEeecCC
Q 028674 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTP 155 (205)
Q Consensus 77 ~~~Has~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~ 155 (205)
+++|+|.|+.|+||+..+++++.+++..+.+.+.... ..+.+ ..+++++.+..++...|+||++|++++|+|++|
T Consensus 206 ~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~nvvp~~~~~~~diR~~p 281 (400)
T PRK13983 206 KQCHASTPENGINAHRAAADFALELDEALHEKFNAKD----PLFDPPYSTFEPTKKEANVDNINTIPGRDVFYFDCRVLP 281 (400)
T ss_pred EccccCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccc----cccCCCCcccccceeecCCcCCcccCCeeEEEEEEEeCC
Confidence 9999999999999999999999999863222221110 01111 135567777623368899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q 028674 156 FYNVTDVMKRLQEYVDDINE 175 (205)
Q Consensus 156 ~~~~~~i~~~i~~~i~~~~~ 175 (205)
+++.+++.++|++.+++.+.
T Consensus 282 ~~~~~~v~~~l~~~~~~~~~ 301 (400)
T PRK13983 282 DYDLDEVLKDIKEIADEFEE 301 (400)
T ss_pred CCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999988654
No 25
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.91 E-value=7.1e-23 Score=168.65 Aligned_cols=144 Identities=17% Similarity=0.201 Sum_probs=122.1
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCC-CCceeeecccEEEEEEEEeecCC
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-KQPCIGTGGMIPWKLHVTGKLFH 80 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~-~~i~~~~~g~~~~~i~~~G~~~H 80 (205)
++|++.+ .+|.|+|++|||+|+ .|++++++++ .++|++++.||+. ..+.++++|..+++|+++|+++|
T Consensus 105 ~~l~~~~----~~i~~~~~~dEE~g~---~G~~~l~~~~----~~~d~~i~~ep~~~~~i~~~~kG~~~~~i~v~G~~~H 173 (346)
T PRK00466 105 WLLNEKG----IKVMVSGLADEESTS---IGAKELVSKG----FNFKHIIVGEPSNGTDIVVEYRGSIQLDIMCEGTPEH 173 (346)
T ss_pred HHHHHcC----CCEEEEEEcCcccCC---ccHHHHHhcC----CCCCEEEEcCCCCCCceEEEeeEEEEEEEEEEeeccc
Confidence 3455543 469999999999987 7999999875 2478999999987 46889999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHH
Q 028674 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (205)
Q Consensus 81 as~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~ 160 (205)
+|.|. .|||..+++++.++.+.. ... ...+++++.++ +|...|+||++|++++|+|++|+++.+
T Consensus 174 as~p~--~nAi~~~~~~l~~l~~~~----~~~---------~~~t~~~~~i~-gG~~~NvvP~~a~~~~diR~~p~~~~~ 237 (346)
T PRK00466 174 SSSAK--SNLIVDISKKIIEVYKQP----ENY---------DKPSIVPTIIR-AGESYNVTPAKLYLHFDVRYAINNKRD 237 (346)
T ss_pred cCCCC--cCHHHHHHHHHHHHHhcc----ccC---------CCCcceeeEEe-cCCcCcccCCceEEEEEEEeCCCCCHH
Confidence 99985 599999999999886531 111 13578899998 999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028674 161 DVMKRLQEYVDD 172 (205)
Q Consensus 161 ~i~~~i~~~i~~ 172 (205)
++.+++++.+.+
T Consensus 238 ~v~~~i~~~~~~ 249 (346)
T PRK00466 238 DLISEIKDKFQE 249 (346)
T ss_pred HHHHHHHHHHhh
Confidence 999999998876
No 26
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.91 E-value=9.2e-23 Score=172.37 Aligned_cols=166 Identities=13% Similarity=0.189 Sum_probs=135.9
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCCceeeecccEEEEEEEEeecCCc
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Ha 81 (205)
++|++.+..++++|.|+|++|||.++ .|+..++..+ +.+|++++.||+...+.++++|..+++++++|+++|+
T Consensus 151 ~~l~~~~~~~~~~i~~~~~~dEE~~g---~g~~~~~~~~----~~~d~~iv~ep~~~~i~~~~~G~~~~~i~v~G~~~Hs 223 (427)
T PRK06837 151 DALRAAGLAPAARVHFQSVIEEESTG---NGALSTLQRG----YRADACLIPEPTGEKLVRAQVGVIWFRLRVRGAPVHV 223 (427)
T ss_pred HHHHHcCCCCCCcEEEEEEeccccCC---HhHHHHHhcC----cCCCEEEEcCCCCCccccccceeEEEEEEEEeecccc
Confidence 56778887889999999999999876 6888877654 3578999999988888899999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCC--CcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCH
Q 028674 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHP--KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (205)
Q Consensus 82 s~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~ 159 (205)
+.|+.|.||+..+++++.+|..+... ..... .....+...+.+++++.++ +|...|+||++|++.+++|+.|+++.
T Consensus 224 ~~p~~g~nAi~~~~~~i~~l~~~~~~-~~~~~~~~~~~~~~~~~~t~ni~~i~-gG~~~nvVP~~~~~~~~ir~~p~~~~ 301 (427)
T PRK06837 224 REAGTGANAIDAAYHLIQALRELEAE-WNARKASDPHFEDVPHPINFNVGIIK-GGDWASSVPAWCDLDCRIAIYPGVTA 301 (427)
T ss_pred CCcccCcCHHHHHHHHHHHHHHHHHH-HhhcccCCCcccCCCCceeEeeeeEe-CCCCCCccCCEEEEEEEEeECCCCCH
Confidence 99999999999999999999765321 11000 0001112235688999998 89899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 028674 160 TDVMKRLQEYVDDINEN 176 (205)
Q Consensus 160 ~~i~~~i~~~i~~~~~~ 176 (205)
+++.+.|++.+++...+
T Consensus 302 ~~v~~~i~~~~~~~~~~ 318 (427)
T PRK06837 302 ADAQAEIEACLAAAARD 318 (427)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999876543
No 27
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=99.91 E-value=8.2e-23 Score=171.06 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=129.4
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCCceeeecccEEEEEEEEeecCCc
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Ha 81 (205)
++|++.+..++++|.|++++|||.++ |.|.+++++.. ++.+|++++.||+...+..+++|..+++|+++|+++|+
T Consensus 121 ~~l~~~g~~~~~~i~~~~~~dEE~~~--g~~~~~~~~~~---~~~~d~~iv~ep~~~~i~~g~~G~~~~~v~~~G~~~Hs 195 (395)
T TIGR03320 121 KIIKDLGLLDDYTLLVTGTVQEEDCD--GLCWQYIIEED---GIKPEFVVITEPTDMNIYRGQRGRMEIKVTVKGVSCHG 195 (395)
T ss_pred HHHHHcCCCCCceEEEEecccccccC--chHHHHHHHhc---CCCCCEEEEcCCCccceEEecceEEEEEEEEeeecccc
Confidence 56777777788899999999999753 13456666542 34579999999998889999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCC-cceeECCeEEEEEEeecCCCCCHH
Q 028674 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTPFYNVT 160 (205)
Q Consensus 82 s~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~-~~nvip~~~~~~~diR~~~~~~~~ 160 (205)
|.|+.|.||+..+++++.+++++.... .. ..+.++.+++++.++ +|. ..|+||++|++++|+|++|+++.+
T Consensus 196 s~p~~g~nAi~~~~~~l~~l~~~~~~~-~~------~~~~~~~t~~v~~i~-~g~~~~NviP~~~~~~~diR~~p~~~~~ 267 (395)
T TIGR03320 196 SAPERGDNAIYKMAPILKELSQLNANL-VE------DPFLGKGTLTVSEIF-FSSPSRCAVADGCTISIDRRLTWGETWE 267 (395)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhh-cC------CcccCcCceeeeeee-cCCCCcCccCCEEEEEEEEecCCCCCHH
Confidence 999999999999999999998753211 10 011224678899998 554 789999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028674 161 DVMKRLQEYVDDI 173 (205)
Q Consensus 161 ~i~~~i~~~i~~~ 173 (205)
++.++|++.+...
T Consensus 268 ~i~~~i~~~~~~~ 280 (395)
T TIGR03320 268 YALEQIRNLPAVQ 280 (395)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999987653
No 28
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.90 E-value=3.7e-23 Score=173.99 Aligned_cols=159 Identities=23% Similarity=0.241 Sum_probs=126.7
Q ss_pred ChhhhcccCCCcccEEEEEeeccCcC----CCCCccHHHHHHcccc---------------------cCCCCCCEEEecC
Q 028674 1 MRKLGETKLKLKSTVIAVFIASEENS----AITGVGVDALVKDGLL---------------------NKLKGGPLYWIDT 55 (205)
Q Consensus 1 ~~~l~~~~~~~~~~i~~~~~~dEE~g----~~~~~G~~~~~~~~~~---------------------~~~~~d~~i~~e~ 55 (205)
++.|++.+..++++|.|++++|||.+ +. .|+++++.+... .++.+|++++.||
T Consensus 105 ~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~--~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~ep 182 (412)
T PRK12892 105 ARALNEHGIATRHPLDVVAWCDEEGSRFTPGF--LGSRAYAGRLDPADALAARCRSDGVPLRDALAAAGLAGRPRPAADR 182 (412)
T ss_pred HHHHHHcCCCCCCCeEEEEecCcccccccCcc--ccHHHHHcCCCHHHHHhCccCCCCcCHHHHHHHcCCChhhcccccc
Confidence 35678888889999999999999984 21 588888743110 1244566666665
Q ss_pred CC---------------------CCceeeecccEEEEEEEEeecCCccC-CC-CCCCHHHHHHHHHHHHHHHhhcCCCCC
Q 028674 56 AD---------------------KQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPH 112 (205)
Q Consensus 56 ~~---------------------~~i~~~~~g~~~~~i~~~G~~~Has~-p~-~g~NAi~~l~~~l~~l~~~~~~~~~~~ 112 (205)
+. ..++.+++|..+++|+++|+++|++. |+ .|.|||..+++++++++++..+..
T Consensus 183 ~~~~~~~e~~~~~g~~~e~~~~~~~i~~~~kG~~~~~i~v~G~~aHa~~~p~~~g~nAi~~a~~~i~~l~~~~~~~~--- 259 (412)
T PRK12892 183 ARPKGYLEAHIEQGPVLEQAGLPVGVVTGIVGIWQYRITVTGEAGHAGTTPMALRRDAGLAAAEMIAAIDEHFPRVC--- 259 (412)
T ss_pred cCccEEEEEEeccCHhHhhCCCcEEEEEEeccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcC---
Confidence 42 23677899999999999999999875 64 689999999999999987543221
Q ss_pred CCcccCCCCCCceEeeeEEecCC-CcceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028674 113 PKEQVYGFETPSTMKPTQWSYPG-GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN 174 (205)
Q Consensus 113 ~~~~~~~~~~~~~~~~g~i~~~g-~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~ 174 (205)
.+.++++|.++ +| ...|+||++|++++|+|++|+++.+++.++|++.++..+
T Consensus 260 ---------~~~~~~vg~i~-gg~~~~NvIP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~~~ 312 (412)
T PRK12892 260 ---------GPAVVTVGRVA-LDPGSPSIIPGRVEFSFDARHPSPPVLQRLVALLEALCREIA 312 (412)
T ss_pred ---------CCcEEEEEEEE-ecCCCCeEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHH
Confidence 14688999998 55 799999999999999999999999999999999998764
No 29
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.90 E-value=4.1e-23 Score=173.18 Aligned_cols=166 Identities=19% Similarity=0.214 Sum_probs=127.9
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEe-----cCCC-CCceeeecccEEEEEEEE
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWI-----DTAD-KQPCIGTGGMIPWKLHVT 75 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~-----e~~~-~~i~~~~~g~~~~~i~~~ 75 (205)
+.|++.+.+++++|.|+|++|||.|+. .|++++++++.+... |.+++. +|+. ..+..+++|..+++|+++
T Consensus 125 ~~l~~~~~~~~~~v~l~~~~dEE~g~~--~G~~~~~~~~~~~~~--~~~~~~d~g~~~~~~~~~i~~~~kG~~~~~l~v~ 200 (400)
T TIGR01880 125 RNLKASGFKFKRTIHISFVPDEEIGGH--DGMEKFAKTDEFKAL--NLGFALDEGLASPDDVYRVFYAERVPWWVVVTAP 200 (400)
T ss_pred HHHHHcCCCCCceEEEEEeCCcccCcH--hHHHHHHHhhhccCC--ceEEEEcCCCcccccccceeEEeeEEEEEEEEEe
Confidence 567777778899999999999998751 499999987655443 444444 3333 367889999999999999
Q ss_pred eecCCccCCCCCCCHHHHHHHHHHHHHHHhhcC---CCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEee
Q 028674 76 GKLFHSGLPHKAINPLELAMEALKVIQTRFYKD---FPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVR 152 (205)
Q Consensus 76 G~~~Has~p~~g~NAi~~l~~~l~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR 152 (205)
|+++|++.|. +.||+..|++++..|.++.... +... ....+...++++++.++ +|...|+||++|++.+|+|
T Consensus 201 G~~~Hs~~~~-~~nai~~l~~~i~~l~~~~~~~~~~~~~~---~~~~~~~~~t~~v~~i~-gG~~~nvIP~~a~~~~diR 275 (400)
T TIGR01880 201 GNPGHGSKLM-ENTAMEKLEKSVESIRRFRESQFQLLQSN---PDLAIGDVTSVNLTKLK-GGVQSNVIPSEAEAGFDIR 275 (400)
T ss_pred cCCCCCCCCC-CCCHHHHHHHHHHHHHHhhHHHHHHHhcC---ccccccccceeecceec-cCCcCCcCCCccEEEEEEe
Confidence 9999999875 4799999999998886542110 1100 00111124688999998 9999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhc
Q 028674 153 LTPFYNVTDVMKRLQEYVDDINEN 176 (205)
Q Consensus 153 ~~~~~~~~~i~~~i~~~i~~~~~~ 176 (205)
++|.++.+++.++|++.+++....
T Consensus 276 ~~p~~~~~~~~~~i~~~i~~~~~~ 299 (400)
T TIGR01880 276 LAPSVDFEEMENRLDEWCADAGEG 299 (400)
T ss_pred eCCCCCHHHHHHHHHHHHhccCCc
Confidence 999999999999999999875433
No 30
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.90 E-value=5.5e-23 Score=172.98 Aligned_cols=160 Identities=16% Similarity=0.212 Sum_probs=123.2
Q ss_pred ChhhhcccCCCcccEEEEEeeccCcC-----CCCCccHHHHHHccccc--------------------CCCCC-------
Q 028674 1 MRKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDALVKDGLLN--------------------KLKGG------- 48 (205)
Q Consensus 1 ~~~l~~~~~~~~~~i~~~~~~dEE~g-----~~~~~G~~~~~~~~~~~--------------------~~~~d------- 48 (205)
+++|++.+..++++|.|+|++|||++ + .|+.++......+ ++.++
T Consensus 107 ~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (412)
T PRK12893 107 VRTLNDAGIRTRRPIEVVSWTNEEGARFAPAM---LGSGVFTGALPLDDALARRDADGITLGEALARIGYRGTARVGRRA 183 (412)
T ss_pred HHHHHHcCCCCCCCeEEEEEcccccccccccc---ccHHHHhCcCChHHHHhccCCCCCCHHHHHHHcCCCcccccccCC
Confidence 35778888889999999999999986 4 5888777542210 11122
Q ss_pred --CEEEecC----------CCCCceeeecccEEEEEEEEeecCCccC-CC-CCCCHHHHHHHHHHHHHHHhhcCCCCCCC
Q 028674 49 --PLYWIDT----------ADKQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHPK 114 (205)
Q Consensus 49 --~~i~~e~----------~~~~i~~~~~g~~~~~i~~~G~~~Has~-p~-~g~NAi~~l~~~l~~l~~~~~~~~~~~~~ 114 (205)
..+..|. ....++++++|..+++|+++|+++|+|. |+ .|+|||..+++++.+|+++..+ ..+
T Consensus 184 ~~~~~~~~~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~G~~aHas~~p~~~G~NAI~~a~~~i~~l~~~~~~-~~~--- 259 (412)
T PRK12893 184 VDAYLELHIEQGPVLEAEGLPIGVVTGIQGIRWLEVTVEGQAAHAGTTPMAMRRDALVAAARIILAVERIAAA-LAP--- 259 (412)
T ss_pred ccEEEEEEeccCHHHHHCCCcEEEEeeecccEEEEEEEEEECCCcCCCcchhccCHHHHHHHHHHHHHHHHHh-cCC---
Confidence 1222221 1234678999999999999999999885 84 7999999999999999876432 121
Q ss_pred cccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHhh
Q 028674 115 EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (205)
Q Consensus 115 ~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~ 175 (205)
..+++++.++.+++..|+||++|++++|+|++|+++.+++.++|++.+++...
T Consensus 260 --------~~~~~vg~i~ggg~~~NvVP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~ 312 (412)
T PRK12893 260 --------DGVATVGRLRVEPNSRNVIPGKVVFTVDIRHPDDARLDAMEAALRAACAKIAA 312 (412)
T ss_pred --------CceEEEEEEEeeCCCceEECCeeEEEEEeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35788999983357999999999999999999999999999999999988654
No 31
>PRK09133 hypothetical protein; Provisional
Probab=99.89 E-value=7.2e-23 Score=175.04 Aligned_cols=164 Identities=19% Similarity=0.172 Sum_probs=127.3
Q ss_pred hhhhcccCCCcccEEEEEeeccC-cCCCCCccHHHHHHcccccCCCCCCEEEecCCC-----------CCceeeecccEE
Q 028674 2 RKLGETKLKLKSTVIAVFIASEE-NSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-----------KQPCIGTGGMIP 69 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE-~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~-----------~~i~~~~~g~~~ 69 (205)
++|++.+..++++|.|+|++||| +|+ .|+++++++.. ..+++|++++ |++. ..++++++|..+
T Consensus 154 ~~l~~~~~~~~~~i~~~~~~dEE~~g~---~G~~~l~~~~~-~~~~~~~~i~-e~~~~~~~~~gept~~~i~~g~kG~~~ 228 (472)
T PRK09133 154 IRLKREGFKPKRDIILALTGDEEGTPM---NGVAWLAENHR-DLIDAEFALN-EGGGGTLDEDGKPVLLTVQAGEKTYAD 228 (472)
T ss_pred HHHHhcCCCCCCCEEEEEECccccCcc---chHHHHHHHHh-hccCeEEEEE-CCCccccCCCCCceEEEeeeecceeEE
Confidence 56777777889999999999999 666 79999998643 2345688888 6643 234578999999
Q ss_pred EEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHHHhhcC-CCC----------------------------CCC------
Q 028674 70 WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD-FPP----------------------------HPK------ 114 (205)
Q Consensus 70 ~~i~~~G~~~Has~p~~g~NAi~~l~~~l~~l~~~~~~~-~~~----------------------------~~~------ 114 (205)
++|+++|+++|+|.|+ +.|||..++++|.++.+..... ... ...
T Consensus 229 ~~i~v~G~~~Hss~p~-~~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (472)
T PRK09133 229 FRLEVTNPGGHSSRPT-KDNAIYRLAAALSRLAAYRFPVMLNDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALL 307 (472)
T ss_pred EEEEEecCCCCCCCCC-CCChHHHHHHHHHHHhhCCCCCccCCccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHH
Confidence 9999999999999997 5899999999999987531100 000 000
Q ss_pred cccCCC--CCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHH
Q 028674 115 EQVYGF--ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD 172 (205)
Q Consensus 115 ~~~~~~--~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~ 172 (205)
.....+ ....+++++.|+ +|...|+||++|++.+|+|++|+++.+++.++|++.+++
T Consensus 308 ~~~~~~~~~~~~t~~~~~i~-gG~~~NvVP~~a~~~lDiR~~p~~~~e~v~~~I~~~i~~ 366 (472)
T PRK09133 308 SADPSYNAMLRTTCVATMLE-GGHAENALPQRATANVNCRIFPGDTIEAVRATLKQVVAD 366 (472)
T ss_pred hcCcchhheeeeeEEeeEEe-cCCcCccCCCceEEEEEEEeCCchhHHHHHHHHHHHhcC
Confidence 000001 124688999998 899999999999999999999999999999999998876
No 32
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.89 E-value=3.8e-22 Score=167.99 Aligned_cols=158 Identities=18% Similarity=0.184 Sum_probs=121.9
Q ss_pred ChhhhcccCCCcccEEEEEeeccCcCCCC--CccHHHH------------------------HHcccccCCCCCCEEEec
Q 028674 1 MRKLGETKLKLKSTVIAVFIASEENSAIT--GVGVDAL------------------------VKDGLLNKLKGGPLYWID 54 (205)
Q Consensus 1 ~~~l~~~~~~~~~~i~~~~~~dEE~g~~~--~~G~~~~------------------------~~~~~~~~~~~d~~i~~e 54 (205)
+++|++.+.+++++|.|++++|||.+... ..|+..+ .+.|+ ..|++++.+
T Consensus 107 ~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~ 182 (414)
T PRK12891 107 VRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSGVFFGVYPLEYLLSRRDDTGRTLGEHLARIGY----AGAEPVGGY 182 (414)
T ss_pred HHHHHHcCCCCCCCeEEEEecccccCcCCcccccHHHHhCCCCHHHHHhccCCCCCCHHHHHHHCCC----CcccccccC
Confidence 46788999999999999999999985200 0255433 33332 233333333
Q ss_pred CC-----------------C--CCceeeecccEEEEEEEEeecCCcc-CCC-CCCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 028674 55 TA-----------------D--KQPCIGTGGMIPWKLHVTGKLFHSG-LPH-KAINPLELAMEALKVIQTRFYKDFPPHP 113 (205)
Q Consensus 55 ~~-----------------~--~~i~~~~~g~~~~~i~~~G~~~Has-~p~-~g~NAi~~l~~~l~~l~~~~~~~~~~~~ 113 (205)
|. . ..++.+++|..+++|+++|+++|+| .|+ .|.|||..+++++++++.+..+. .
T Consensus 183 ~~~~~~e~h~e~g~vle~~~~~~~iv~~~kG~~~~~v~v~Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~~~~~~~-~--- 258 (414)
T PRK12891 183 PVHAAYELHIEQGAILERAGKTIGVVTAGQGQRWYEVTLTGVDAHAGTTPMAFRRDALVGAARMIAFLDALGRRD-A--- 258 (414)
T ss_pred CCCEEEEEEeCCCHHHHHCCCcEEEEeeccCcEEEEEEEEeECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc-C---
Confidence 32 1 2467899999999999999999988 576 58999999999999998764321 1
Q ss_pred CcccCCCCCCceEeeeEEecCC-CcceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHhh
Q 028674 114 KEQVYGFETPSTMKPTQWSYPG-GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (205)
Q Consensus 114 ~~~~~~~~~~~~~~~g~i~~~g-~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~ 175 (205)
.+.++++|.|+ +| ...|+||++|++.+|+|++|.++.+++.++|++.++.++.
T Consensus 259 --------~~~t~~vg~I~-gG~~~~NvVP~~~~~~~diR~~~~e~~e~v~~~i~~~~~~~~~ 312 (414)
T PRK12891 259 --------PDARATVGMID-ARPNSRNTVPGECFFTVEFRHPDDAVLDRLDAALRAELARIAD 312 (414)
T ss_pred --------CCeEEEEEEEE-eeCCCcceECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 14688999999 65 6899999999999999999999999999999999987653
No 33
>PRK08262 hypothetical protein; Provisional
Probab=99.89 E-value=1.4e-22 Score=173.93 Aligned_cols=172 Identities=17% Similarity=0.137 Sum_probs=126.4
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEE------EecCC--C----CCceeeecccEE
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLY------WIDTA--D----KQPCIGTGGMIP 69 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i------~~e~~--~----~~i~~~~~g~~~ 69 (205)
++|++++.+++++|+|+|++|||+|+ .|++++++.....+..+|+++ ..++. . ..++++++|..+
T Consensus 167 ~~l~~~~~~l~~~I~llf~~dEE~g~---~G~~~l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~p~~~i~~~~kG~~~ 243 (486)
T PRK08262 167 EALLAQGFQPRRTIYLAFGHDEEVGG---LGARAIAELLKERGVRLAFVLDEGGAITEGVLPGVKKPVALIGVAEKGYAT 243 (486)
T ss_pred HHHHHcCCCCCCeEEEEEecccccCC---cCHHHHHHHHHHhcCCEEEEEeCCceecccccCCCCceEEeeEEeeeeeEE
Confidence 56778887899999999999999988 699988864221223344432 22211 1 245678899999
Q ss_pred EEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHHHhhc------------CCCCCCC-----------------------
Q 028674 70 WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYK------------DFPPHPK----------------------- 114 (205)
Q Consensus 70 ~~i~~~G~~~Has~p~~g~NAi~~l~~~l~~l~~~~~~------------~~~~~~~----------------------- 114 (205)
++|+++|+++|+|.|+. .||+..++++|.++.+.... .+.+...
T Consensus 244 ~~i~v~G~~~Hss~p~~-~nai~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (486)
T PRK08262 244 LELTARATGGHSSMPPR-QTAIGRLARALTRLEDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAK 322 (486)
T ss_pred EEEEEecCCCCCCCCCC-CCHHHHHHHHHHHHhhCCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhc
Confidence 99999999999999988 99999999999998753100 0000000
Q ss_pred cccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHhhcch
Q 028674 115 EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIE 178 (205)
Q Consensus 115 ~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~~~ 178 (205)
.........++++++.|+ +|...|+||++|++++|+|++|+++.+++.++|++.+++...+++
T Consensus 323 ~~~~~~~~~~t~~i~~I~-gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~v~ 385 (486)
T PRK08262 323 SPETAAMLRTTTAPTMLK-GSPKDNVLPQRATATVNFRILPGDSVESVLAHVRRAVADDRVEIE 385 (486)
T ss_pred CCccceeEEeeeeeeEEe-cCCccccCCCccEEEEEEEeCCCCCHHHHHHHHHHHhccCceEEE
Confidence 000001124688999998 889999999999999999999999999999999999987533343
No 34
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.89 E-value=5.7e-22 Score=166.93 Aligned_cols=162 Identities=16% Similarity=0.100 Sum_probs=122.0
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCC--CCccHHHHHHccc--------------------ccCCCCCCEEE--ecCC-
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAI--TGVGVDALVKDGL--------------------LNKLKGGPLYW--IDTA- 56 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~--~~~G~~~~~~~~~--------------------~~~~~~d~~i~--~e~~- 56 (205)
++|++.+..++++|.|++++|||.++. ...|++.+.+... -.++.+|++.. .||+
T Consensus 106 ~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ep~~ 185 (414)
T PRK12890 106 AALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSRALAGTLDVEAVLATRDDDGTTLAEALRRIGGDPDALPGALRPPGA 185 (414)
T ss_pred HHHHHcCCCCCCCeEEEEEecccccccCCccccHHHHHcccChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCC
Confidence 567777888899999999999997320 0147665543211 01233444332 4442
Q ss_pred --------------------CCCceeeecccEEEEEEEEeecCCccC-CC-CCCCHHHHHHHHHHHHHHHhhcCCCCCCC
Q 028674 57 --------------------DKQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHPK 114 (205)
Q Consensus 57 --------------------~~~i~~~~~g~~~~~i~~~G~~~Has~-p~-~g~NAi~~l~~~l~~l~~~~~~~~~~~~~ 114 (205)
...++.+++|..+++|+++|+++|+|. |+ .+.|||..+++++.+|+++..+. .
T Consensus 186 ~~~~~~~h~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~nAI~~~~~~i~~l~~~~~~~-~---- 260 (414)
T PRK12890 186 VAAFLELHIEQGPVLEAEGLPIGVVTAIQGIRRQAVTVEGEANHAGTTPMDLRRDALVAAAELVTAMERRARAL-L---- 260 (414)
T ss_pred ccEEEEEeeCcCHHHHhCCCceEEEEeecCcEEEEEEEEEECCCCCcCChhhccCHHHHHHHHHHHHHHHHHhc-C----
Confidence 234778999999999999999999985 85 45899999999999998764322 1
Q ss_pred cccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHhh
Q 028674 115 EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (205)
Q Consensus 115 ~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~ 175 (205)
.+.+++++.++.++...|+||++|++++|+|++|+++.+++.++|++.+++...
T Consensus 261 -------~~~~~~~g~i~~gg~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~ 314 (414)
T PRK12890 261 -------HDLVATVGRLDVEPNAINVVPGRVVFTLDLRSPDDAVLEAAEAALLAELEAIAA 314 (414)
T ss_pred -------CCeEEEEEEEEECCCCceEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 146789999983457999999999999999999999999999999998887654
No 35
>PRK07473 carboxypeptidase; Provisional
Probab=99.89 E-value=5.8e-22 Score=164.89 Aligned_cols=148 Identities=13% Similarity=0.142 Sum_probs=122.9
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCC--CCceeeecccEEEEEEEEeecC
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~--~~i~~~~~g~~~~~i~~~G~~~ 79 (205)
++|++.+..++++|.|+|++|||.|+ .|++.+++++.. .+|++|+.||+. ..++.+++|..+++|+++|+++
T Consensus 125 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~g~~~~~~~~~~---~~d~~iv~ep~~~~~~v~~~~~G~~~~~v~~~G~~a 198 (376)
T PRK07473 125 RQLARAGITTPLPITVLFTPDEEVGT---PSTRDLIEAEAA---RNKYVLVPEPGRPDNGVVTGRYAIARFNLEATGRPS 198 (376)
T ss_pred HHHHHcCCCCCCCEEEEEeCCcccCC---ccHHHHHHHhhc---cCCEEEEeCCCCCCCCEEEECeeeEEEEEEEEeEcC
Confidence 56777777778899999999999988 799999986432 468999999985 4688999999999999999999
Q ss_pred Ccc-CCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCC
Q 028674 80 HSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (205)
Q Consensus 80 Has-~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~ 158 (205)
|++ .|+.|+|||..+++++.+|+.+.. . ..+++++.|+ +|...|+||++|++.++.|......
T Consensus 199 Hag~~p~~g~nAi~~~~~~i~~l~~~~~---~------------~~~~~vg~i~-gg~~~n~VP~~~~~~~d~r~~~~~~ 262 (376)
T PRK07473 199 HAGATLSEGRSAIREMARQILAIDAMTT---E------------DCTFSVGIVH-GGQWVNCVATTCTGEALSMAKRQAD 262 (376)
T ss_pred CCCCCcccCcCHHHHHHHHHHHHHHhcC---C------------CceEeEeeEE-cCCCCcCCCCceEEEEEEEeCCHhH
Confidence 986 699999999999999999987521 1 2578999998 8899999999999999999877555
Q ss_pred HHHHHHHHHHHHH
Q 028674 159 VTDVMKRLQEYVD 171 (205)
Q Consensus 159 ~~~i~~~i~~~i~ 171 (205)
.+++.+++.+.+.
T Consensus 263 ~~~~~~~i~~~~~ 275 (376)
T PRK07473 263 LDRGVARMLALSG 275 (376)
T ss_pred HHHHHHHHHHhhC
Confidence 5555555555443
No 36
>PRK06446 hypothetical protein; Provisional
Probab=99.88 E-value=3.4e-22 Score=169.32 Aligned_cols=166 Identities=19% Similarity=0.239 Sum_probs=125.3
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCC------CceeeecccEEEEEEEE
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK------QPCIGTGGMIPWKLHVT 75 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~------~i~~~~~g~~~~~i~~~ 75 (205)
+.|++.+ .++++|.|+|++|||.|+ .|++.++++.. ..+++|+++ .|++.. .++++++|..+++++++
T Consensus 116 ~~l~~~~-~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~vi-~E~~~~~~~~~~~i~~~~kG~~~~~l~v~ 189 (436)
T PRK06446 116 KHLIDKH-KLNVNVKFLYEGEEEIGS---PNLEDFIEKNK-NKLKADSVI-MEGAGLDPKGRPQIVLGVKGLLYVELVLR 189 (436)
T ss_pred HHHHHcC-CCCCCEEEEEEcccccCC---HhHHHHHHHHH-HHhCCCEEE-ECCCCccCCCCeEEEEecCeEEEEEEEEE
Confidence 3444443 578899999999999988 68888887631 234567877 487654 57889999999999999
Q ss_pred e--ecCCccCCCCCCCHHHHHHHHHHHHHHHhh--------cCCCCCCC------------------cc------c----
Q 028674 76 G--KLFHSGLPHKAINPLELAMEALKVIQTRFY--------KDFPPHPK------------------EQ------V---- 117 (205)
Q Consensus 76 G--~~~Has~p~~g~NAi~~l~~~l~~l~~~~~--------~~~~~~~~------------------~~------~---- 117 (205)
| +++|+|.|..|.|||..+++++++|.+... +.+.+... .. .
T Consensus 190 G~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 269 (436)
T PRK06446 190 TGTKDLHSSNAPIVRNPAWDLVKLLSTLVDGEGRVLIPGFYDDVRELTEEERELLKKYDIDVEELRKALGFKELKYSDRE 269 (436)
T ss_pred eCCCCCCCCCCccCCCHHHHHHHHHHhhCCCCCCEEccchhcCCCCCCHHHHHHHHhCCCCHHHHHHHhCCccccCCCcc
Confidence 9 999999999999999999999999864210 00000000 00 0
Q ss_pred ---CCCCCCceEeeeEEecCC----CcceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028674 118 ---YGFETPSTMKPTQWSYPG----GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN 174 (205)
Q Consensus 118 ---~~~~~~~~~~~g~i~~~g----~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~ 174 (205)
......+++|++.+. +| ...|+||++|++++|+|++|+++.+++.+.|++.+++..
T Consensus 270 ~~~~~~~~~~t~nv~~i~-~g~~~~~~~nvvP~~a~~~~d~R~~p~~~~~~v~~~l~~~~~~~~ 332 (436)
T PRK06446 270 KIAEALLTEPTCNIDGFY-SGYTGKGSKTIVPSRAFAKLDFRLVPNQDPYKIFELLKKHLQKVG 332 (436)
T ss_pred cHHHHHHhCCcEEEeeee-ccccCCCCCcEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 001123678998887 55 457999999999999999999999999999999998853
No 37
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.88 E-value=2.7e-21 Score=163.22 Aligned_cols=162 Identities=22% Similarity=0.295 Sum_probs=131.1
Q ss_pred ChhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCCceeeecccEEEEEEEEeec--
Q 028674 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKL-- 78 (205)
Q Consensus 1 ~~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~-- 78 (205)
+++|++.+..++++|.|+|++|||+|+ .|++++++++ +.+|++++.||+... ..+++|...+.++++|..
T Consensus 130 ~~~l~~~~~~~~~~v~~~~~~dEE~g~---~G~~~~~~~~----~~~d~~i~~ep~~~~-~~~~~G~~~~~~~v~g~~~~ 201 (421)
T PRK08596 130 IQLLHEAGIELPGDLIFQSVIGEEVGE---AGTLQCCERG----YDADFAVVVDTSDLH-MQGQGGVITGWITVKSPQTF 201 (421)
T ss_pred HHHHHHcCCCCCCcEEEEEEeccccCC---cCHHHHHhcC----CCCCEEEECCCCCCc-cccccceeeEEEEEEeeccc
Confidence 356788888899999999999999987 7999999875 346899999997765 478999887888888763
Q ss_pred --------CCccCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCC-CCCceEeeeEEecCCCcceeECCeEEEEE
Q 028674 79 --------FHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGF-ETPSTMKPTQWSYPGGGINQIPGECTVSG 149 (205)
Q Consensus 79 --------~Has~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~g~~~nvip~~~~~~~ 149 (205)
+|++.|+.|.|||..+++++.+|+.+... +.... ....+ ....+++++.|+ +|...|+||++|++.+
T Consensus 202 ~~~~~~~~~H~~~p~~G~nai~~~~~~i~~l~~~~~~-~~~~~--~~~~~~~~~~t~~v~~i~-gG~~~nvvP~~~~~~~ 277 (421)
T PRK08596 202 HDGTRRQMIHAGGGLFGASAIEKMMKIIQSLQELERH-WAVMK--SYPGFPPGTNTINPAVIE-GGRHAAFIADECRLWI 277 (421)
T ss_pred ccccccccccccCCccCcCHHHHHHHHHHHHHHHHHH-Hhhcc--cCccCCCCCcceeeeeee-CCCCCCccCceEEEEE
Confidence 79999999999999999999999865211 10000 00011 123678999998 9999999999999999
Q ss_pred EeecCCCCCHHHHHHHHHHHHHHHh
Q 028674 150 DVRLTPFYNVTDVMKRLQEYVDDIN 174 (205)
Q Consensus 150 diR~~~~~~~~~i~~~i~~~i~~~~ 174 (205)
|+|++|+++.+++.++|++.+++..
T Consensus 278 d~R~~p~~~~~~v~~~i~~~~~~~~ 302 (421)
T PRK08596 278 TVHFYPNETYEQVIKEIEEYIGKVA 302 (421)
T ss_pred EeeeCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 38
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.88 E-value=2.7e-21 Score=159.41 Aligned_cols=147 Identities=18% Similarity=0.139 Sum_probs=118.8
Q ss_pred cCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCC-CceeeecccEEEEEEEEeecCCccCCCC
Q 028674 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFHSGLPHK 86 (205)
Q Consensus 8 ~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-~i~~~~~g~~~~~i~~~G~~~Has~p~~ 86 (205)
+.+++++|.|++++|||+|+ .|...++.++ +.+|+++++||+.. .++++++|..+++++++|+++|||.|
T Consensus 107 ~~~~~~~i~~~~~~dEE~g~---~~~~~~l~~~----~~~d~~iv~Ept~~~~i~~~~kG~~~~~l~~~G~~~Hss~~-- 177 (348)
T PRK04443 107 EALVRARVSFVGAVEEEAPS---SGGARLVADR----ERPDAVIIGEPSGWDGITLGYKGRLLVTYVATSESFHSAGP-- 177 (348)
T ss_pred cccCCCCEEEEEEcccccCC---hhHHHHHHhc----cCCCEEEEeCCCCccceeeecccEEEEEEEEEeCCCccCCC--
Confidence 45688999999999999987 5666665543 25799999999874 68899999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHH
Q 028674 87 AINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166 (205)
Q Consensus 87 g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i 166 (205)
|.||+..++++++++.++.. ...+ ...+..+.+++++.++ ...|++|++|++++|+|++|+++.+++.+.|
T Consensus 178 g~NAi~~~~~~l~~l~~~~~-~~~~-----~~~~~~~~~~~i~~i~---~~~n~iP~~~~~~~d~R~~p~~~~~~i~~~i 248 (348)
T PRK04443 178 EPNAAEDAIEWWLAVEAWFE-ANDG-----RERVFDQVTPKLVDFD---SSSDGLTVEAEMTVGLRLPPGLSPEEAREIL 248 (348)
T ss_pred CCCHHHHHHHHHHHHHHHHh-cCcc-----ccccccccceeeeEEe---cCCCCCCceEEEEEEEccCCCCCHHHHHHHH
Confidence 79999999999999987532 1111 1112234567888886 2468999999999999999999999999999
Q ss_pred HHHHHH
Q 028674 167 QEYVDD 172 (205)
Q Consensus 167 ~~~i~~ 172 (205)
++.+..
T Consensus 249 ~~~~~~ 254 (348)
T PRK04443 249 DALLPT 254 (348)
T ss_pred HHhCCC
Confidence 998844
No 39
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.88 E-value=2.4e-21 Score=162.53 Aligned_cols=160 Identities=18% Similarity=0.182 Sum_probs=122.2
Q ss_pred ChhhhcccCCCcccEEEEEeeccCc-----CCCCCccHHHHHHccc------c-c--C---------CCCCCEEEecCCC
Q 028674 1 MRKLGETKLKLKSTVIAVFIASEEN-----SAITGVGVDALVKDGL------L-N--K---------LKGGPLYWIDTAD 57 (205)
Q Consensus 1 ~~~l~~~~~~~~~~i~~~~~~dEE~-----g~~~~~G~~~~~~~~~------~-~--~---------~~~d~~i~~e~~~ 57 (205)
+++|++.+.+++++|.|++++|||. ++ .|++++..... + + + ..++.++..+++.
T Consensus 98 ~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~---~Gs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~ 174 (401)
T TIGR01879 98 VDALKEAYVVPLHPIEVVAFTEEEGSRFPYGM---WGSRNMVGLANPEDVRNICDAKGISFAEAMKACGPDLPNQPLRPR 174 (401)
T ss_pred HHHHHHcCCCCCCCeEEEEEeCCcCcCccccc---ccHHHHhcccchhHHHhCcCCCCCCHHHHHHHcCCCccccccccc
Confidence 3678899999999999999999997 44 68888864220 0 0 0 1223333233222
Q ss_pred -----------------------CCceeeecccEEEEEEEEeecCCccC-CC-CCCCHHHHHHHHHHHHHHHhhcCCCCC
Q 028674 58 -----------------------KQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPH 112 (205)
Q Consensus 58 -----------------------~~i~~~~~g~~~~~i~~~G~~~Has~-p~-~g~NAi~~l~~~l~~l~~~~~~~~~~~ 112 (205)
..++.+++|..+++|+++|+++|++. |. .|+||+..+++++.+++++..+. .
T Consensus 175 ~~~~~~~e~Hieqg~~l~~~g~~~~v~~~~~G~~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l~~~~-~-- 251 (401)
T TIGR01879 175 GDIKAYVELHIEQGPVLESNGQPIGVVNAIAGQRWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQVEEKAKRM-G-- 251 (401)
T ss_pred ccccEEEEEEEcCCcChhhCCCeEEEEEEecCcEEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc-C--
Confidence 23567899999999999999999986 53 57999999999999998764322 1
Q ss_pred CCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHhh
Q 028674 113 PKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (205)
Q Consensus 113 ~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~ 175 (205)
.+.+.+++.++.++...|+||++|++.+|+|++|+++.+++.+++++.++..+.
T Consensus 252 ---------~~~~~~vg~i~~g~~~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~~~~~~~ 305 (401)
T TIGR01879 252 ---------DPTVGTVGKVEARPNGVNVIPGKVTFTLDLRHTDAAVLRDFTQQLENDIKAISD 305 (401)
T ss_pred ---------CCeEEEEEEEEecCCceEEECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 134678999983346789999999999999999999999999999999987654
No 40
>PRK08201 hypothetical protein; Provisional
Probab=99.87 E-value=2.3e-21 Score=165.13 Aligned_cols=167 Identities=20% Similarity=0.189 Sum_probs=125.4
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCC-----CceeeecccEEEEEEEEe
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~i~~~G 76 (205)
+.|++.+..++++|.|+|++|||.|+ .|+..++++.. +.+.+|++++.|++.. .++++++|..+++|+++|
T Consensus 133 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~~ii~e~~~~~~~~~~i~~g~kG~~~~~l~v~G 208 (456)
T PRK08201 133 EALLKVEGTLPVNVKFCIEGEEEIGS---PNLDSFVEEEK-DKLAADVVLISDTTLLGPGKPAICYGLRGLAALEIDVRG 208 (456)
T ss_pred HHHHHhcCCCCCCEEEEEEcccccCC---ccHHHHHHhhH-HhccCCEEEEeCCCcCCCCCEEEEEecCCeEEEEEEEEe
Confidence 45666666778899999999999988 68888887632 2355789999998753 378899999999999999
Q ss_pred ecC--CccCCCC-CCCHHHHHHHHHHHHHHHhhc--------CCCCCCC-------------------cc-cCCC-----
Q 028674 77 KLF--HSGLPHK-AINPLELAMEALKVIQTRFYK--------DFPPHPK-------------------EQ-VYGF----- 120 (205)
Q Consensus 77 ~~~--Has~p~~-g~NAi~~l~~~l~~l~~~~~~--------~~~~~~~-------------------~~-~~~~----- 120 (205)
+++ |||.|.. +.|||..+++++++|.+...+ .+.+... .. ...+
T Consensus 209 ~~~~~Hs~~~~~~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (456)
T PRK08201 209 AKGDLHSGLYGGAVPNALHALVQLLASLHDEHGTVAVEGFYDGVRPLTPEEREEFAALGFDEEKLKRELGVDELFGEEGY 288 (456)
T ss_pred CCCCCccccccCcCCCHHHHHHHHHHhcCCCCCCEecCCcccCCCCCCHHHHHHHHhCCCCHHHHHhhcCCccccCCcch
Confidence 998 9987654 579999999999998642100 0000000 00 0000
Q ss_pred ------CCCceEeeeEEecCCC----cceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028674 121 ------ETPSTMKPTQWSYPGG----GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 173 (205)
Q Consensus 121 ------~~~~~~~~g~i~~~g~----~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~ 173 (205)
....+++++.++ +|. ..|+||++|++.+|+|++|+++.+++.+.|++.+++.
T Consensus 289 ~~~~~~~~~~t~~i~~i~-gg~~~~~~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~l~~~ 350 (456)
T PRK08201 289 TALERTWARPTLELNGVY-GGFQGEGTKTVIPAEAHAKITCRLVPDQDPQEILDLIEAHLQAH 350 (456)
T ss_pred HHHHHHHhCCcEEEEeee-cCCCCCCCceEECcceEEEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 012477888887 553 3799999999999999999999999999999999874
No 41
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.87 E-value=1e-21 Score=162.53 Aligned_cols=151 Identities=17% Similarity=0.261 Sum_probs=123.3
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCC--CCceeeecccEEEEEEEEeecC
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~--~~i~~~~~g~~~~~i~~~G~~~ 79 (205)
+.|++.+ .++++|.|+|++|||.|+ .|++.+.+.+ +.+++++..+++. +.++.+.+|..+++++++|+++
T Consensus 113 ~~l~~~~-~~~~~v~~~~~~~EE~g~---~G~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~g~~~~~i~~~G~~~ 184 (361)
T TIGR01883 113 DVLSTEE-TPHGTIEFIFTVKEELGL---IGMRLFDESK----ITAAYGYCLDAPGEVGNIQLAAPTQVKVDATIAGKDA 184 (361)
T ss_pred HHHHhcC-CCCCCEEEEEEcccccCc---hhHhHhChhh----cCcceeEEEeCCCCcceEEecCCceEEEEEEEEeeec
Confidence 4565554 577899999999999987 7998887543 3356777777643 5688889999999999999999
Q ss_pred Ccc-CCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCC
Q 028674 80 HSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (205)
Q Consensus 80 Has-~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~ 158 (205)
|++ .|+.|+||+..+++++.++... ... ...+++++.++ +|...|+||++|++.+|+|+++..+
T Consensus 185 Ha~~~p~~g~nAi~~~~~~i~~l~~~---~~~-----------~~~~~~i~~i~-gG~~~nvVP~~~~~~~diR~~~~~~ 249 (361)
T TIGR01883 185 HAGLVPEDGISAISVARMAIHAMRLG---RID-----------EETTANIGSFS-GGVNTNIVQDEQLIVAEARSLSFRK 249 (361)
T ss_pred CCCCCcccCcCHHHHHHHHHHhcccc---CCC-----------Cccccccceee-cCCccCccCCceEEEEEEecCCHHH
Confidence 985 7999999999999999987532 111 12567899998 9999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhh
Q 028674 159 VTDVMKRLQEYVDDINE 175 (205)
Q Consensus 159 ~~~i~~~i~~~i~~~~~ 175 (205)
.+++.+++++.++....
T Consensus 250 ~~~~~~~i~~~i~~~~~ 266 (361)
T TIGR01883 250 AEAQVQTMRERFEQAAE 266 (361)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888877643
No 42
>PRK09104 hypothetical protein; Validated
Probab=99.86 E-value=6.6e-21 Score=162.65 Aligned_cols=167 Identities=19% Similarity=0.171 Sum_probs=126.7
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCC-----CceeeecccEEEEEEEEe
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~i~~~G 76 (205)
+.|++++..++++|.|+|++|||+|+ .|+..++++.. +.+.+|++|+.|++.. .++++++|..+++++++|
T Consensus 141 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~~iv~E~~~~~~~~~~i~~~~kG~~~~~l~v~g 216 (464)
T PRK09104 141 RAWKAVTGSLPVRVTILFEGEEESGS---PSLVPFLEANA-EELKADVALVCDTGMWDRETPAITTSLRGLVGEEVTITA 216 (464)
T ss_pred HHHHHhcCCCCCcEEEEEECccccCC---ccHHHHHHhhH-HhcCCCEEEEeCCCCCCCCCeEEEeecCCeEEEEEEEEe
Confidence 56777766788899999999999988 68888876532 2245789999997642 477899999999999999
Q ss_pred --ecCCccC-CCCCCCHHHHHHHHHHHHHHHhhcC-CCCCC---------------C--cccCCC---------------
Q 028674 77 --KLFHSGL-PHKAINPLELAMEALKVIQTRFYKD-FPPHP---------------K--EQVYGF--------------- 120 (205)
Q Consensus 77 --~~~Has~-p~~g~NAi~~l~~~l~~l~~~~~~~-~~~~~---------------~--~~~~~~--------------- 120 (205)
+++|||. |..|.||+..+++++.+|.+...+- +.... . .....|
T Consensus 217 ~~~~~Hss~~~~~g~nai~~~~~~l~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (464)
T PRK09104 217 ADRDLHSGLFGGAAANPIRVLTRILAGLHDETGRVTLPGFYDGVEELPPEILAQWKALGFTAEAFLGPVGLSIPAGEKGR 296 (464)
T ss_pred CCCCccccccCCccCCHHHHHHHHHHhccCCCCCEeCCccccCCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccCcccH
Confidence 6899996 6889999999999999986421000 00000 0 000000
Q ss_pred ------CCCceEeeeEEecCCC----cceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028674 121 ------ETPSTMKPTQWSYPGG----GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 173 (205)
Q Consensus 121 ------~~~~~~~~g~i~~~g~----~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~ 173 (205)
...++++++.++ +|. ..|+||++|++.+|+|++|+++.+++.+.|++.+++.
T Consensus 297 ~~~~~~~~~~t~~i~~i~-gg~~~~~~~nvvP~~~~~~~diR~~p~~~~~~v~~~i~~~l~~~ 358 (464)
T PRK09104 297 SVLEQIWSRPTCEINGIW-GGYTGEGFKTVIPAEASAKVSFRLVGGQDPAKIREAFRAYVRAR 358 (464)
T ss_pred HHHHHHhhCCeEEEeccc-cCCCCCCCccEecCceEEEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 113578899997 664 4699999999999999999999999999999999864
No 43
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.86 E-value=1.1e-20 Score=152.87 Aligned_cols=173 Identities=18% Similarity=0.234 Sum_probs=129.2
Q ss_pred ChhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecC--CCC---CceeeecccEEEEEEEE
Q 028674 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDT--ADK---QPCIGTGGMIPWKLHVT 75 (205)
Q Consensus 1 ~~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~--~~~---~i~~~~~g~~~~~i~~~ 75 (205)
++.|+..+.+++++|.+.|++|||.++. .|++.+.+...+++... +.+..|+ +.. ++++++||.++++++++
T Consensus 141 ir~L~~~g~kp~Rti~lsfvpDEEi~G~--~Gm~~fa~~~~~~~l~~-~filDEG~~se~d~~~vfyaEkg~w~~~v~~~ 217 (420)
T KOG2275|consen 141 IRNLKASGFKPKRTIHLSFVPDEEIGGH--IGMKEFAKTEEFKKLNL-GFILDEGGATENDFATVFYAEKGPWWLKVTAN 217 (420)
T ss_pred HHHHHhcCCCcCceEEEEecCchhccCc--chHHHHhhhhhhcccce-eEEecCCCCCcccceeEEEEeeceeEEEEEec
Confidence 3567788999999999999999999875 79998887433454433 3444565 322 46889999999999999
Q ss_pred eecCCccCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCC
Q 028674 76 GKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTP 155 (205)
Q Consensus 76 G~~~Has~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~ 155 (205)
|.++|+|.|- -..|+.++.+++.++.+...+...-............+|+|++.++ ||.+.|++|++.++.+|+|..+
T Consensus 218 G~~GHss~~~-~nTa~~~l~klv~~~~~fr~~q~~~l~~~p~~~~~~vtT~Nv~~i~-GGv~~N~~P~~~ea~~dirv~~ 295 (420)
T KOG2275|consen 218 GTPGHSSYPP-PNTAIEKLEKLVESLEEFREKQVDLLASGPKLALGDVTTINVGIIN-GGVQSNVLPETFEAAFDIRVRP 295 (420)
T ss_pred CCCCCCCCCC-CccHHHHHHHHHHHHHHhHHHHHHHhhcCCceeccceeEEeeeeee-cccccCcCchhheeeeeeEecc
Confidence 9999999842 2466777777777776543111100000112233456899999999 9999999999999999999999
Q ss_pred CCCHHHHHHHH-HHHHHHHhhcch
Q 028674 156 FYNVTDVMKRL-QEYVDDINENIE 178 (205)
Q Consensus 156 ~~~~~~i~~~i-~~~i~~~~~~~~ 178 (205)
..+..++.+++ .+++++....++
T Consensus 296 ~~d~~~i~~~l~~~w~~~~~eg~t 319 (420)
T KOG2275|consen 296 HVDVKAIRDQLEDEWAEEAGEGVT 319 (420)
T ss_pred CCCHHHHHHHHHHHhhhhcCCceE
Confidence 99999999999 777777765444
No 44
>PRK07906 hypothetical protein; Provisional
Probab=99.85 E-value=1.5e-20 Score=158.96 Aligned_cols=163 Identities=20% Similarity=0.216 Sum_probs=117.7
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCC-----------CceeeecccEEE
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----------QPCIGTGGMIPW 70 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-----------~i~~~~~g~~~~ 70 (205)
++|++.+..++++|.|+|++|||+++. .|+++++++.. +.+....+++.|++.. .++.+++|..++
T Consensus 118 ~~l~~~~~~~~~~i~~~~~~dEE~g~~--~g~~~l~~~~~-~~~~~~~~ii~e~~~~~~~~~~~~~~~~i~~~~kG~~~~ 194 (426)
T PRK07906 118 RHLARTGRRPPRDLVFAFVADEEAGGT--YGAHWLVDNHP-ELFEGVTEAISEVGGFSLTVPGRDRLYLIETAEKGLAWM 194 (426)
T ss_pred HHHHHcCCCCCccEEEEEecCcccchh--hhHHHHHHHHH-HhccchheEEECCCceeeccCCCccEEEEEeccceEEEE
Confidence 567788888999999999999999762 49999987632 1121112345666431 266789999999
Q ss_pred EEEEEeecCCccCCCCCCCHHHHHHHHHHHHHHHhhcC------------CCCCCC---ccc---------------CCC
Q 028674 71 KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD------------FPPHPK---EQV---------------YGF 120 (205)
Q Consensus 71 ~i~~~G~~~Has~p~~g~NAi~~l~~~l~~l~~~~~~~------------~~~~~~---~~~---------------~~~ 120 (205)
+|+++|+++|+|.|+ +.|||..+++++.+|.+...+. +..... ... ...
T Consensus 195 ~v~v~G~~~Hss~p~-~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 273 (426)
T PRK07906 195 RLTARGRAGHGSMVN-DDNAVTRLAEAVARIGRHRWPLVLTPTVRAFLDGVAELTGLEFDPDDPDALLAKLGPAARMVGA 273 (426)
T ss_pred EEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHhhhhcCcccCcccHHHHHHHHhhcCcchhh
Confidence 999999999999997 4999999999999986431100 000000 000 000
Q ss_pred CCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHHHHHH
Q 028674 121 ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 170 (205)
Q Consensus 121 ~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i 170 (205)
...++++++.|+ +|...|+||++|++.+|+|++|+++ +++.+.+++.+
T Consensus 274 ~~~~t~~~~~i~-gG~~~NviP~~~~~~~d~R~~p~~~-~~i~~~i~~~~ 321 (426)
T PRK07906 274 TLRNTANPTMLK-AGYKVNVIPGTAEAVVDGRFLPGRE-EEFLATVDELL 321 (426)
T ss_pred hhcccccceeEe-ccCccccCCCceEEEEEEeECCCCc-HHHHHHHHHHh
Confidence 013588999998 8889999999999999999999886 66777776665
No 45
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.85 E-value=3.8e-20 Score=155.35 Aligned_cols=161 Identities=16% Similarity=0.114 Sum_probs=122.0
Q ss_pred ChhhhcccCCCcccEEEEEeeccCcC-----CCCCccHHHHHHcc----cc---c-------------CC----------
Q 028674 1 MRKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDALVKDG----LL---N-------------KL---------- 45 (205)
Q Consensus 1 ~~~l~~~~~~~~~~i~~~~~~dEE~g-----~~~~~G~~~~~~~~----~~---~-------------~~---------- 45 (205)
++.|++++.+++++|.+++.++||.+ + .|++.+.-.- .+ + ++
T Consensus 100 ~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~---~Gs~~~~g~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~ 176 (406)
T TIGR03176 100 VDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVF---WGSKNIFGLAKPEDVRTIEDAKGIKFVDAMHACGFDLRKAPTVRD 176 (406)
T ss_pred HHHHHHcCCCCCCCeEEEEeccccCccCCccc---ccHHHHhCCCCHHHHHhCcCCCCCCHHHHHHHcCCCccccccccc
Confidence 46889999999999999999999975 4 5776665200 00 0 01
Q ss_pred CCCCEEEecCCCC----------CceeeecccEEEEEEEEeecCCccCCCC--CCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 028674 46 KGGPLYWIDTADK----------QPCIGTGGMIPWKLHVTGKLFHSGLPHK--AINPLELAMEALKVIQTRFYKDFPPHP 113 (205)
Q Consensus 46 ~~d~~i~~e~~~~----------~i~~~~~g~~~~~i~~~G~~~Has~p~~--g~NAi~~l~~~l~~l~~~~~~~~~~~~ 113 (205)
++++.+-.|...+ .++.+.+|..+++|+++|+++|++.|.. +.||+..+++++..+.....+ ..
T Consensus 177 ~~~~~~elHieqG~~Le~~g~~igiv~~~~G~~~~~v~v~GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~~~-~~--- 252 (406)
T TIGR03176 177 DIKAFVELHIEQGCVLESEGQSIGVVNAIVGQRRYTVNLKGEANHAGTTPMSYRRDTVYAFSRICTQSIERAKE-IG--- 252 (406)
T ss_pred ccceEEEEEECCCcchHHCCCeEEEEeecccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-cC---
Confidence 1223333443222 2356899999999999999999997544 489999999999999875322 11
Q ss_pred CcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHhhc
Q 028674 114 KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (205)
Q Consensus 114 ~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~ 176 (205)
.+.++++|.++.+|+..|+||++|++++|+|+++.++.+++.+++++.+++++..
T Consensus 253 --------~~~~~tvG~I~~gg~~~NvIP~~a~~~~DiR~~~~~~~e~v~~~i~~~i~~ia~~ 307 (406)
T TIGR03176 253 --------DPLVLTFGKVEPVPNTVNVVPGETTFTIDCRHTDAAVLRNFTKELENDMKAIADE 307 (406)
T ss_pred --------CCcEEEEEEEEEcCCceEEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1357899999856788999999999999999999999999999999988887653
No 46
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=99.85 E-value=5.5e-20 Score=150.93 Aligned_cols=135 Identities=20% Similarity=0.260 Sum_probs=112.3
Q ss_pred cccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCC-CceeeecccEEEEEEEEeecCCccCCCCCCCH
Q 028674 12 KSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFHSGLPHKAINP 90 (205)
Q Consensus 12 ~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-~i~~~~~g~~~~~i~~~G~~~Has~p~~g~NA 90 (205)
.++|.|++++|||+|+ .|+++++++.. +++++++||+.. .++++++|..+++++++|+++|+|.|. ||
T Consensus 101 ~~~i~~~~~~dEE~g~---~G~~~~~~~~~-----~~~~ii~ept~~~~i~~~~kG~~~~~v~~~G~~~Hss~~~---~a 169 (336)
T TIGR01902 101 GIKVIVSGLVDEESSS---KGAREVIDKNY-----PFYVIVGEPSGAEGITLGYKGSLQLKIMCEGTPFHSSSAG---NA 169 (336)
T ss_pred CCcEEEEEEeCcccCC---ccHHHHHhhcC-----CCEEEEecCCCCcceeeeeeeEEEEEEEEEecCcccCCCh---hH
Confidence 4689999999999987 79999998742 358899999874 688999999999999999999999885 48
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHHHH
Q 028674 91 LELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQE 168 (205)
Q Consensus 91 i~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~ 168 (205)
+..+..+++++.+.+..... + ...+++++.++ +|...|+||++|++++|+|++|+++.+++.+++++
T Consensus 170 i~~~~~~~~~l~~~~~~~~~---------~-~~~~~~~~~i~-gg~~~nvIP~~a~~~idiR~~p~~~~~~~~~~i~~ 236 (336)
T TIGR01902 170 AELLIDYSKKIIEVYKQPEN---------Y-DKPSIVPTIIR-FGESYNDTPAKLELHFDLRYPPNNKPEEAIKEITD 236 (336)
T ss_pred HHHHHHHHHHHHHHhccccC---------C-CCCcceeEEEE-ccCCCcCCCceEEEEEEEeeCCCCCHHHHHHHHHh
Confidence 99999999988743221111 1 12467788888 89999999999999999999999999999888887
No 47
>PRK07907 hypothetical protein; Provisional
Probab=99.84 E-value=7e-20 Score=155.79 Aligned_cols=162 Identities=13% Similarity=0.078 Sum_probs=123.3
Q ss_pred cCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCC-----CceeeecccEEEEEEEE--eecCC
Q 028674 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVT--GKLFH 80 (205)
Q Consensus 8 ~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~i~~~--G~~~H 80 (205)
+.+++++|.|++++|||+|+ .|+++++++.. +.+++|++++.|++.. .+.++++|..+++++++ |+++|
T Consensus 140 ~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~~iv~E~~~~~~~~p~i~~~~kG~~~~~l~v~~~G~~~H 215 (449)
T PRK07907 140 GGDLPVGVTVFVEGEEEMGS---PSLERLLAEHP-DLLAADVIVIADSGNWSVGVPALTTSLRGNADVVVTVRTLEHAVH 215 (449)
T ss_pred ccCCCCcEEEEEEcCcccCC---ccHHHHHHhch-HhhcCCEEEEecCCcCCCCCeEEEEecCCcEEEEEEEEECCCCCC
Confidence 34567899999999999998 79999998632 2256789999999764 36789999999999998 89999
Q ss_pred ccCC-CCCCCHHHHHHHHHHHHHHHhhcC----CCCCCCcccC-----------------C----------CCCCceEee
Q 028674 81 SGLP-HKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVY-----------------G----------FETPSTMKP 128 (205)
Q Consensus 81 as~p-~~g~NAi~~l~~~l~~l~~~~~~~----~~~~~~~~~~-----------------~----------~~~~~~~~~ 128 (205)
+|.| ..+.||+..+++++.+|.+...+. +......... . ....+++++
T Consensus 216 ss~~~~~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i 295 (449)
T PRK07907 216 SGQFGGAAPDALTALVRLLATLHDEDGNVAVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITV 295 (449)
T ss_pred CccccccCCCHHHHHHHHHHhhCCCCCCEeCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEE
Confidence 9974 668999999999999986531110 0000000000 0 012457788
Q ss_pred eEEec--CCCcceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028674 129 TQWSY--PGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 173 (205)
Q Consensus 129 g~i~~--~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~ 173 (205)
+.++. +|+..|+||++|++++|+|++|+++.+++.+.|++.+++.
T Consensus 296 ~~i~~~~~g~~~nvIP~~a~~~~diR~~p~~~~e~v~~~l~~~l~~~ 342 (449)
T PRK07907 296 IGIDAPPVAGASNALPPSARARLSLRVAPGQDAAEAQDALVAHLEAH 342 (449)
T ss_pred EeeecCCCCCCCCEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 88872 1467899999999999999999999999999999999875
No 48
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=99.84 E-value=1.5e-19 Score=154.21 Aligned_cols=159 Identities=14% Similarity=0.011 Sum_probs=114.7
Q ss_pred ChhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCE---------EEecCCCCCce----------
Q 028674 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPL---------YWIDTADKQPC---------- 61 (205)
Q Consensus 1 ~~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~---------i~~e~~~~~i~---------- 61 (205)
+++|++.+.+++++|.|+|++|||+|+ .|++++++++.. +|++ +.+|++...+.
T Consensus 129 ~~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~~~~~~~----~d~~~~~d~~~~~~~ge~g~~~~~~~~~~~~~~~ 201 (466)
T TIGR01886 129 MKILKELGLPPSKKIRFVVGTNEETGW---VDMDYYFKHEET----PDFGFSPDAEFPIINGEKGNFTLELSFKGDNKGD 201 (466)
T ss_pred HHHHHHhCCCCCCCEEEEEECccccCc---ccHHHHHhcCcC----CCEEEECCCCceeEEEecceEEEEEEEecCCCCc
Confidence 467888888999999999999999998 799999987541 3444 33443321110
Q ss_pred --------------------------------------eeecccE---------EEEEEEEeecCCccCCCCCCCHHHHH
Q 028674 62 --------------------------------------IGTGGMI---------PWKLHVTGKLFHSGLPHKAINPLELA 94 (205)
Q Consensus 62 --------------------------------------~~~~g~~---------~~~i~~~G~~~Has~p~~g~NAi~~l 94 (205)
.+++|.. +++|+++|+++|+|.|+.|+|||..|
T Consensus 202 ~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~ 281 (466)
T TIGR01886 202 YVLDSFKAGLAENMVPQVARAVISGPDAEALKAAYESFLADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFL 281 (466)
T ss_pred eeEEEEEcCCcCCccCCeeEEEEecCCHHHHHHHHHHHHhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHH
Confidence 1233432 78899999999999999999999999
Q ss_pred HHHHHHH----------HHHhhcCCC-C----CC-CcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCC
Q 028674 95 MEALKVI----------QTRFYKDFP-P----HP-KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (205)
Q Consensus 95 ~~~l~~l----------~~~~~~~~~-~----~~-~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~ 158 (205)
++++.++ ..+ .+... . .. ........+..++|+|.|+ +|.. | ++|++.+|+|++|+++
T Consensus 282 ~~~l~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~g~~S~nvgvI~-gG~~-~---~~~~l~iD~R~~Pge~ 355 (466)
T TIGR01886 282 ALFLNQYAFAGGAKNFIHFL-AEVEHEDFYGEKLGIAFHDELMGDLAMNAGMFD-FDHA-N---KESKLLLNFRYPQGTS 355 (466)
T ss_pred HHHHHhccCChhHHHHHHHH-HHhcCCCCCcccCCCcccccCcCceEEEeEEEE-EecC-C---ceEEEEEEEecCCCCC
Confidence 9988873 111 11100 0 00 0011223456789999998 6644 3 7999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028674 159 VTDVMKRLQEYVDD 172 (205)
Q Consensus 159 ~~~i~~~i~~~i~~ 172 (205)
.+++.++|++.+..
T Consensus 356 ~eev~~eI~~~i~~ 369 (466)
T TIGR01886 356 PETMQKQVLDKFGG 369 (466)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998875
No 49
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=99.83 E-value=3e-19 Score=150.26 Aligned_cols=164 Identities=24% Similarity=0.290 Sum_probs=121.5
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccc-cCCCCCCEEEecCC-----CCCceeeecccEEEEEEEE
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLL-NKLKGGPLYWIDTA-----DKQPCIGTGGMIPWKLHVT 75 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~-~~~~~d~~i~~e~~-----~~~i~~~~~g~~~~~i~~~ 75 (205)
+.|.+.+..++++|.+++++|||+++ .|+..++..+.. .++.+|+++.+|++ ...+.++++|..+++++++
T Consensus 129 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~~~~~~~~~~~~~~~~~~d~~i~~E~~~~~~~~~~~~~~~kG~~~~~v~v~ 205 (409)
T COG0624 129 SALKAAGGELPGDVRLLFTADEESGG---AGGKAYLEEGEEALGIRPDYEIVGEPTLESEGGDIIVVGHKGSLWLEVTVK 205 (409)
T ss_pred HHHHHhCCCCCeEEEEEEEeccccCC---cchHHHHHhcchhhccCCCEEEeCCCCCcccCCCeEEEcceeEEEEEEEEE
Confidence 45667677888999999999999998 688888776532 24678999999983 2345678999999999999
Q ss_pred eecCCccC--CCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEec-------CCCcceeECCeEE
Q 028674 76 GKLFHSGL--PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSY-------PGGGINQIPGECT 146 (205)
Q Consensus 76 G~~~Has~--p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~-------~g~~~nvip~~~~ 146 (205)
|+++|+|. |+.+.|++..+...+.++.....+...+. +..+.+++++.+.. +|...|+||++|+
T Consensus 206 G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~nviP~~~~ 278 (409)
T COG0624 206 GKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEG-------FDGPLGLNVGLILAGPGASVNGGDKVNVIPGEAE 278 (409)
T ss_pred eecccccccCCcccccHHHHHHHHHHHHHHHhccccccc-------ccCCccccccccccCCcccccCCccCceecceEE
Confidence 99999998 89999966555555555543322111111 00023444554431 3334699999999
Q ss_pred EEEEeecCCCCCHHHHHHHHHHHHHHHhh
Q 028674 147 VSGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (205)
Q Consensus 147 ~~~diR~~~~~~~~~i~~~i~~~i~~~~~ 175 (205)
+.+|+|+.|..+.+++.+++++.++....
T Consensus 279 ~~~d~R~~p~~~~~~~~~~v~~~i~~~~~ 307 (409)
T COG0624 279 ATVDIRLLPGEDLDDVLEELEAELRAIAP 307 (409)
T ss_pred EEEEEecCCcCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999988754
No 50
>PRK07079 hypothetical protein; Provisional
Probab=99.83 E-value=1.5e-19 Score=154.48 Aligned_cols=167 Identities=17% Similarity=0.170 Sum_probs=122.9
Q ss_pred hhhhc-ccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCC-----CCceeeecccEEEEEEEE
Q 028674 2 RKLGE-TKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-----KQPCIGTGGMIPWKLHVT 75 (205)
Q Consensus 2 ~~l~~-~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~-----~~i~~~~~g~~~~~i~~~ 75 (205)
++|.+ .+.++.++|.|+|++|||+|+ .|++++++++. ..+.+|++|+.|++. ..++++++|..+++|+++
T Consensus 140 ~~l~~~~~~~~~~~i~~~~~~dEE~g~---~G~~~l~~~~~-~~~~~d~~iv~e~~~~~~~~~~i~~g~kG~~~~~v~v~ 215 (469)
T PRK07079 140 EQVLAARGGRLGFNVKLLIEMGEEIGS---PGLAEVCRQHR-EALAADVLIASDGPRLSAERPTLFLGSRGAVNFRLRVN 215 (469)
T ss_pred HHHHHhcCCCCCCCEEEEEECccccCC---ccHHHHHHHhH-HhcCCCEEEEeCCCccCCCCeEEEEecceEEEEEEEEe
Confidence 34443 346788999999999999998 79999998742 234579999999763 247889999999999999
Q ss_pred ee--cCCccCCCCC--CCHHHHHHHHHHHHHHHhhc--------------------CCCCCCC---------cccC----
Q 028674 76 GK--LFHSGLPHKA--INPLELAMEALKVIQTRFYK--------------------DFPPHPK---------EQVY---- 118 (205)
Q Consensus 76 G~--~~Has~p~~g--~NAi~~l~~~l~~l~~~~~~--------------------~~~~~~~---------~~~~---- 118 (205)
|+ +.||+ +..| .||+..+++++.++.+...+ .+..... ....
T Consensus 216 G~~~~~hs~-~~~g~~~nai~~l~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (469)
T PRK07079 216 LRDGAHHSG-NWGGLLRNPGTVLAHAIASLVDARGRIQVPGLRPPPLPAAVRAALADITVGGGPGDPAIDPDWGEPGLTP 294 (469)
T ss_pred eCCCCCCCC-ccccccCCHHHHHHHHHHHhCCCCCCEecCCccCCCCCHHHHHHHHhCCCchhhhccCcccccCCCCcCH
Confidence 98 44665 4334 79999999999988432100 0000000 0000
Q ss_pred --CCCCCceEeeeEEecCCC---cceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028674 119 --GFETPSTMKPTQWSYPGG---GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN 174 (205)
Q Consensus 119 --~~~~~~~~~~g~i~~~g~---~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~ 174 (205)
......++|++.|+ +|. ..|+||++|++++|+|++|+++.+++.++|++.+++..
T Consensus 295 ~~~~~~~~t~nv~~i~-gG~~~~~~NvVP~~a~~~vdiR~~P~~~~e~v~~~l~~~i~~~~ 354 (469)
T PRK07079 295 AERVFGWNTLEVLAFK-TGNPDAPVNAIPGSARAVCQLRFVVGTDWENLAPHLRAHLDAHG 354 (469)
T ss_pred HHHHhhCCceEEEeee-cCCCCCcceEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 00113578999998 763 58999999999999999999999999999999998854
No 51
>PRK13381 peptidase T; Provisional
Probab=99.82 E-value=2.4e-19 Score=150.54 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=115.7
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCC-CCCceeeecccEEEEEEEEeecCC
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~-~~~i~~~~~g~~~~~i~~~G~~~H 80 (205)
++|++.+ .++++|.|+|++|||+|+ .|+++++.++ +.+|++++.|.. .+.+..+++|..+++|+++|+++|
T Consensus 151 ~~l~~~~-~~~g~i~~~~~~dEE~g~---~G~~~~~~~~----~~~d~~~~~~~~~~~~i~~~~~G~~~~~v~v~Gk~aH 222 (404)
T PRK13381 151 ENLTENE-VEHGDIVVAFVPDEEIGL---RGAKALDLAR----FPVDFAYTIDCCELGEVVYENFNAASAEITITGVTAH 222 (404)
T ss_pred HHHHhcC-CCCCCEEEEEEccccccc---ccHHHHHHhc----CCCCEEEEecCCCcceEEEecCcceEEEEEEEeEecC
Confidence 3455554 468899999999999987 7999997653 345777766542 346778899999999999999999
Q ss_pred ccC-CCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCH
Q 028674 81 SGL-PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (205)
Q Consensus 81 as~-p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~ 159 (205)
++. |+.|.|||..+++++.+|.++..+..... ...+++++.++ + .|++|++.+|+|++|.++.
T Consensus 223 a~~~p~~g~NAI~~a~~~i~~l~~~~~~~~~~~---------~~~~i~v~~i~-g------~p~~~~~~~diR~~~~~~~ 286 (404)
T PRK13381 223 PMSAKGVLVNPILMANDFISHFPRQETPEHTEG---------REGYIWVNDLQ-G------NVNKAKLKLIIRDFDLDGF 286 (404)
T ss_pred CCCCcccCcCHHHHHHHHHHhCCccCCCCCCCC---------cccEEEEEeEE-e------CcceEEEEEEEecCCHHHH
Confidence 874 88999999999999999865422111100 12346667665 3 2899999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 028674 160 TDVMKRLQEYVDDINE 175 (205)
Q Consensus 160 ~~i~~~i~~~i~~~~~ 175 (205)
+++.++|++.+++++.
T Consensus 287 e~i~~~i~~~~~~~~~ 302 (404)
T PRK13381 287 EARKQFIEEVVAKINA 302 (404)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988754
No 52
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=99.82 E-value=1.2e-19 Score=125.73 Aligned_cols=109 Identities=27% Similarity=0.375 Sum_probs=92.5
Q ss_pred eeecccEEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeE
Q 028674 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQI 141 (205)
Q Consensus 62 ~~~~g~~~~~i~~~G~~~Has~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvi 141 (205)
++++|..+++|+++|+++|+|.|+.|+||+..+++++.+|++...+.... ....+.++.+++++.++ +|...|++
T Consensus 1 ~g~~G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~----~~~~~~~~~~~~~~~i~-gG~~~n~i 75 (111)
T PF07687_consen 1 IGHRGVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFR----PEEFFPGPPTLNIGSIE-GGTAPNVI 75 (111)
T ss_dssp EEEEEEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTST----HHHCTCTSEEEEEEEEE-EESSTTEE
T ss_pred CcCCCEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcccccc----cccccccccceeEeecc-cCCcCCEE
Confidence 57899999999999999999999999999999999999998763221100 00112246889999998 88999999
Q ss_pred CCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHhh
Q 028674 142 PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (205)
Q Consensus 142 p~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~ 175 (205)
|++|++++++|++|.++.+++.+.+++.+++.+.
T Consensus 76 p~~a~~~~~~R~~p~~~~~~i~~~i~~~~~~~~~ 109 (111)
T PF07687_consen 76 PDEATLTVDIRYPPGEDLEEIKAEIEAAVEKIAK 109 (111)
T ss_dssp SSEEEEEEEEEESTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCcchHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999988764
No 53
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.82 E-value=2.7e-19 Score=152.82 Aligned_cols=165 Identities=15% Similarity=0.079 Sum_probs=114.3
Q ss_pred ChhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHccccc--CCCCCC---EEEecCCCCC----------------
Q 028674 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLN--KLKGGP---LYWIDTADKQ---------------- 59 (205)
Q Consensus 1 ~~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~--~~~~d~---~i~~e~~~~~---------------- 59 (205)
|+.|++.+..++++|.|+|++|||+|+ .|++++++..... ++.+|. ++.+|++...
T Consensus 130 l~~l~~~g~~~~~~i~l~~~~DEE~g~---~G~~~l~~~~~~~~~~~~~d~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~ 206 (466)
T PRK07318 130 LKIIKELGLPLSKKVRFIVGTDEESGW---KCMDYYFEHEEAPDFGFSPDAEFPIINGEKGITTFDLVHFEGENEGDYVL 206 (466)
T ss_pred HHHHHHcCCCCCccEEEEEEcccccCc---hhHHHHHHhCCCCCEEEEeCCCCcEEEEEeeeEEEEEEeccccCCCCcee
Confidence 467788888888999999999999988 7999999874211 122232 3445542100
Q ss_pred ------------------------------------ceeeecccE-----EEEEEEEeecCCccCCCCCCCHHHHHHHHH
Q 028674 60 ------------------------------------PCIGTGGMI-----PWKLHVTGKLFHSGLPHKAINPLELAMEAL 98 (205)
Q Consensus 60 ------------------------------------i~~~~~g~~-----~~~i~~~G~~~Has~p~~g~NAi~~l~~~l 98 (205)
+..+++|.. +++|+++|+++|+|.|+.|.|||..|++++
T Consensus 207 ~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i 286 (466)
T PRK07318 207 VSFKSGLRENMVPDSAEAVITGDDLDDLIAAFEAFLAENGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFL 286 (466)
T ss_pred EEEEcCccceecCcccEEEEecCCHHHHHHHHHHHHhhcCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHH
Confidence 001455543 799999999999999999999999999999
Q ss_pred HHHHH------Hh---hcCCC-CC-----CCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHH
Q 028674 99 KVIQT------RF---YKDFP-PH-----PKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVM 163 (205)
Q Consensus 99 ~~l~~------~~---~~~~~-~~-----~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~ 163 (205)
.++.. ++ .+... .. .........+..++|++.++ +|... +|++.+|+|++|+++.+++.
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~nvg~i~-gg~~~-----~~~~~iDiR~~p~~~~~~v~ 360 (466)
T PRK07318 287 NQLNLDGDAKAFLDFAAEYLHEDTRGEKLGIAYEDDVMGDLTMNVGVFS-FDEEK-----GGTLGLNFRYPVGTDFEKIK 360 (466)
T ss_pred HhccCchhHHHHHHHHHHhcCCCCCcccCCCcccCCCccCeEEEeeEEE-EecCc-----EEEEEEEEeCCCCCCHHHHH
Confidence 99853 10 00000 00 00001112234678888887 54321 69999999999999999999
Q ss_pred HHHHHHHHHHh
Q 028674 164 KRLQEYVDDIN 174 (205)
Q Consensus 164 ~~i~~~i~~~~ 174 (205)
++|++.+++..
T Consensus 361 ~~i~~~~~~~~ 371 (466)
T PRK07318 361 AKLEKLIGVTG 371 (466)
T ss_pred HHHHHHHHhcC
Confidence 99999987754
No 54
>PRK05469 peptidase T; Provisional
Probab=99.80 E-value=6e-19 Score=148.37 Aligned_cols=150 Identities=16% Similarity=0.066 Sum_probs=112.8
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCC-CCCceeeecccEEEEEEEEeecCC
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~-~~~i~~~~~g~~~~~i~~~G~~~H 80 (205)
++|++.+..++++|.|+|++|||+| .|++.++.+. +..|+++..++. .+.+.++.+|..+++|+++|+++|
T Consensus 153 ~~l~~~~~~~~g~v~~~f~~dEE~g----~Ga~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~g~~~~~i~v~Gk~~H 224 (408)
T PRK05469 153 EYLIAHPEIKHGDIRVAFTPDEEIG----RGADKFDVEK----FGADFAYTVDGGPLGELEYENFNAASAKITIHGVNVH 224 (408)
T ss_pred HHHHhCCCCCCCCEEEEEecccccC----CCHHHhhhhh----cCCcEEEEecCCCcceEEeccCceeEEEEEEeeecCC
Confidence 5667776678899999999999986 3888886432 234556555442 345777788999999999999999
Q ss_pred cc-CCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCH
Q 028674 81 SG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (205)
Q Consensus 81 as-~p~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~ 159 (205)
++ .|+.|.|||..++++++.++......... ....+++++.++ + .|++|++++|+|+.+.++.
T Consensus 225 a~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~---------~~~~~i~~g~i~-g------gp~~~~i~~diR~~~~e~~ 288 (408)
T PRK05469 225 PGTAKGKMVNALLLAADFHAMLPADETPETTE---------GYEGFYHLTSIK-G------TVEEAELSYIIRDFDREGF 288 (408)
T ss_pred CCCCcccccCHHHHHHHHHHhCCCCCCCCCCC---------CceEEEEEEEEE-E------ccceEEEEEEEecCCHHHH
Confidence 86 58999999999999998876432111000 001235666665 3 4899999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 028674 160 TDVMKRLQEYVDDINE 175 (205)
Q Consensus 160 ~~i~~~i~~~i~~~~~ 175 (205)
+++.++|++.+++++.
T Consensus 289 e~i~~~i~~~~~~~~~ 304 (408)
T PRK05469 289 EARKALMQEIAKKVNA 304 (408)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988753
No 55
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.79 E-value=3.2e-18 Score=149.52 Aligned_cols=162 Identities=21% Similarity=0.259 Sum_probs=120.7
Q ss_pred ChhhhcccCCCcccEEEEEeeccCc-----CCCCCccHHHHH--------H----ccc-----cc--CC-----------
Q 028674 1 MRKLGETKLKLKSTVIAVFIASEEN-----SAITGVGVDALV--------K----DGL-----LN--KL----------- 45 (205)
Q Consensus 1 ~~~l~~~~~~~~~~i~~~~~~dEE~-----g~~~~~G~~~~~--------~----~~~-----~~--~~----------- 45 (205)
++.|++.+++++++|.|+..++||+ ++ .|++.+. + +|. ++ ++
T Consensus 282 ~~~l~~~~~~~~~~i~vi~~~~EEg~rF~~~~---~GS~~~~G~~~~~~~~~~d~~G~~~~~~l~~~g~~~~~~~~~~~~ 358 (591)
T PRK13799 282 VKELHEQGERLPFHFEVIAFAEEEGQRFKATF---LGSGALIGDFNMELLDIKDADGISLREAIQHAGHCIDAIPKIARD 358 (591)
T ss_pred HHHHHHcCCCCCCCeEEEEecCCCccCCCccc---cchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccC
Confidence 4678999999999999999999997 34 5666665 1 122 00 11
Q ss_pred --CCCCEEEecCCCC----------CceeeecccEEEEEEEEeecCCccC-C-CCCCCHHHHHHHHHHHHHHHhhcCCCC
Q 028674 46 --KGGPLYWIDTADK----------QPCIGTGGMIPWKLHVTGKLFHSGL-P-HKAINPLELAMEALKVIQTRFYKDFPP 111 (205)
Q Consensus 46 --~~d~~i~~e~~~~----------~i~~~~~g~~~~~i~~~G~~~Has~-p-~~g~NAi~~l~~~l~~l~~~~~~~~~~ 111 (205)
++++.+-.|...+ .++.+++|..+++|+++|+++|++. | ..+.||+..+++++..++.+..+. +
T Consensus 359 ~~~~~a~~ElHIEQgp~Le~~~~~igvV~g~~G~~~~~Itv~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~~--~ 436 (591)
T PRK13799 359 PADVLGFIEVHIEQGPVLLELDIPLGIVTSIAGSARYICEFIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQD--Q 436 (591)
T ss_pred CCCccEEEEEEeCCCHHHHHCCCcEEEEeeeccceEEEEEEEEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHhc--C
Confidence 1122233333332 2457899999999999999999986 5 458999999999999998764321 1
Q ss_pred CCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHhhc
Q 028674 112 HPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (205)
Q Consensus 112 ~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~ 176 (205)
. ...++++|.++.+++..|+||++|++.+|+|+++.++.+.+.+++++.+++++..
T Consensus 437 ~---------~~~v~tVG~I~~~~ga~NvIP~~a~~~~DiR~~~~e~~e~l~~~i~~~i~~ia~~ 492 (591)
T PRK13799 437 H---------ASLVATMGQLNVPSGSTNVIPGRCQFSLDIRAATDEIRDAAVADILAEIAAIAAR 492 (591)
T ss_pred C---------CCcEEEEEEEEecCCCCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1246788999854568999999999999999999999998888888888777643
No 56
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.79 E-value=5.6e-18 Score=148.09 Aligned_cols=160 Identities=21% Similarity=0.255 Sum_probs=118.7
Q ss_pred ChhhhcccCCCcccEEEEEeeccCcC-----CCCCccHHHH--------HHc----cc-c------cCC-----------
Q 028674 1 MRKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDAL--------VKD----GL-L------NKL----------- 45 (205)
Q Consensus 1 ~~~l~~~~~~~~~~i~~~~~~dEE~g-----~~~~~G~~~~--------~~~----~~-~------~~~----------- 45 (205)
++.|++.+++++++|.|++.+|||++ + .|++.+ ++. |. + .++
T Consensus 282 ~~~l~~~~~~~~~~i~vv~~~~EEg~rF~~~~---~GS~~~~G~~~~~~~~~~d~~g~~~~~al~~~g~~~~~~~~~~~~ 358 (591)
T PRK13590 282 VRELHRQGRRLPFGLEVVGFAEEEGQRYKATF---LGSGALIGDFDPAWLDQKDADGITMREAMQHAGLCIDDIPKLRRD 358 (591)
T ss_pred HHHHHHcCCCCCCCeEEEEecCCccccCCccc---cchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccC
Confidence 46789999999999999999999973 3 466642 221 11 0 011
Q ss_pred --CCCCEEEecCCC----------CCceeeecccEEEEEEEEeecCCccC-CCC-CCCHHHHHHHHHHHHHHHhhcCCCC
Q 028674 46 --KGGPLYWIDTAD----------KQPCIGTGGMIPWKLHVTGKLFHSGL-PHK-AINPLELAMEALKVIQTRFYKDFPP 111 (205)
Q Consensus 46 --~~d~~i~~e~~~----------~~i~~~~~g~~~~~i~~~G~~~Has~-p~~-g~NAi~~l~~~l~~l~~~~~~~~~~ 111 (205)
.+++.+-.|... ..++.+.+|..+++|+++|+++|++. |.. +.||+..+++++..++..... .
T Consensus 359 ~~~~~a~~ElHiEqg~~Le~~~~~~gvV~~~~G~~~~~v~v~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~~~--~- 435 (591)
T PRK13590 359 PARYLGFVEVHIEQGPVLNELDLPLGIVTSINGSVRYVGEMIGMASHAGTTPMDRRRDAAAAVAELALYVEQRAAQ--D- 435 (591)
T ss_pred CCCccEEEEEEeCCCHHHHHCCCceEEEeeeeccEEEEEEEEeECCCCCCCCchhcccHHHHHHHHHHHHHHHHhc--C-
Confidence 111223333222 23567899999999999999999996 544 689999999999999875321 1
Q ss_pred CCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHhhc
Q 028674 112 HPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (205)
Q Consensus 112 ~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~ 176 (205)
...++++|.++..|+..|+||++|++++|+|+++.++.+++.+.+++.+++++..
T Consensus 436 ----------~~~v~tVG~i~~~Gg~~NVIP~~a~~~iDiR~~~~e~~e~v~~~i~~~i~~ia~~ 490 (591)
T PRK13590 436 ----------GDSVGTVGMLEVPGGSINVVPGRCRFSLDIRAPTDAQRDAMVADVLAELEAICER 490 (591)
T ss_pred ----------CCcEEEEEEEEECCCCCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1246689999855778999999999999999999999999988888888887643
No 57
>PRK07205 hypothetical protein; Provisional
Probab=99.77 E-value=2.8e-17 Score=139.70 Aligned_cols=164 Identities=12% Similarity=0.111 Sum_probs=109.8
Q ss_pred ChhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHccccc--CCCCCC--------------EEEecCCCCC-----
Q 028674 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLN--KLKGGP--------------LYWIDTADKQ----- 59 (205)
Q Consensus 1 ~~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~--~~~~d~--------------~i~~e~~~~~----- 59 (205)
|++|++.+..++++|.|+|++|||+++ .|++.+++..... ++.+|. ++.+++++..
T Consensus 128 l~~l~~~~~~~~~~i~l~~~~dEE~g~---~g~~~~~~~~~~~~~~~~~~~~~~v~~~ekG~~~~~i~~~~~~~~~~~~g 204 (444)
T PRK07205 128 VKALLDAGVQFNKRIRFIFGTDEETLW---RCMNRYNEVEEQATMGFAPDSSFPLTYAEKGLLQAKLVGPGSDQLELEVG 204 (444)
T ss_pred HHHHHHcCCCCCCcEEEEEECCcccCc---ccHHHHHhCCCCCCeeECCCCCCceEEEEeceEEEEEEeCCccceEEecC
Confidence 356778888889999999999999988 7999888753211 122331 3344544221
Q ss_pred ------ceee-ec--------------cc----EEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHHH-----hhcCC
Q 028674 60 ------PCIG-TG--------------GM----IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTR-----FYKDF 109 (205)
Q Consensus 60 ------i~~~-~~--------------g~----~~~~i~~~G~~~Has~p~~g~NAi~~l~~~l~~l~~~-----~~~~~ 109 (205)
+..+ ++ |. .+.+++++|+++|+|.|+.|.|||..+++++.+++.. +.+.+
T Consensus 205 ~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~~~~v~v~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~ 284 (444)
T PRK07205 205 QAFNVVPAKASYQGPKLEAVKKELDKLGFEYVVKENEVTVLGKSVHAKDAPQGINAVIRLAKALVVLEPHPALDFLANVI 284 (444)
T ss_pred CcccccCceeEEEecCHHHHHHHHHhcCceEeecCcEEEEEeEEcccCCCccCcCHHHHHHHHHHhccHHHHHHHHHHhc
Confidence 0011 22 21 2348999999999999999999999999999888642 11111
Q ss_pred CCCC------CcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028674 110 PPHP------KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN 174 (205)
Q Consensus 110 ~~~~------~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~ 174 (205)
.... ........+..++|++. .|++|++|++.+|+|++|+++.+++.+.|++.+++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~t~nvg~-------~nvvP~~a~~~ld~R~~p~~~~e~v~~~i~~~~~~~~ 348 (444)
T PRK07205 285 GEDATGLNIFGDIEDEPSGKLSFNIAG-------LTITKEKSEIRIDIRIPVLADKEKLVQQLSQKAQEYG 348 (444)
T ss_pred CCCCccccCCccccCCCcCCceEEeEE-------EEEECCEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 1000 00001111234455543 4799999999999999999999999999999887643
No 58
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.77 E-value=5.9e-18 Score=144.67 Aligned_cols=142 Identities=20% Similarity=0.246 Sum_probs=111.6
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCC-CCceeee----------------
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-KQPCIGT---------------- 64 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~-~~i~~~~---------------- 64 (205)
.+|++.+.. +++|.++|++|||.|+ .|++.+... . +.+|++++.||+. +.+++++
T Consensus 125 ~~l~~~~~~-~~~i~~l~t~dEE~G~---~ga~~l~~~-~---~~~~~~i~~e~~~~g~l~~g~~G~~~~~~~~~~~r~~ 196 (485)
T PRK15026 125 AVLADENVV-HGPLEVLLTMTEEAGM---DGAFGLQSN-W---LQADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREA 196 (485)
T ss_pred HHHHhCCCC-CCCEEEEEEcccccCc---HhHHHhhhc-c---CCcCEEEEeCCCCCCeEEEeCCCcceEEEEEEEEEEe
Confidence 455555543 7899999999999998 799988652 2 3578999999974 5565544
Q ss_pred --cccEEEEEEEEe-ecCCcc-CCCCCC-CHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcce
Q 028674 65 --GGMIPWKLHVTG-KLFHSG-LPHKAI-NPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGIN 139 (205)
Q Consensus 65 --~g~~~~~i~~~G-~~~Has-~p~~g~-NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~n 139 (205)
+|...++|+++| +++||+ .|+.|. |||..|+++|.++.. ..+++++.|+ ||+..|
T Consensus 197 ~~~g~~~~~i~v~Gl~ggHsG~~i~~g~~nAi~~la~~l~~~~~-------------------~~~~~v~~i~-GG~~~N 256 (485)
T PRK15026 197 VPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAE-------------------ELDLRLIDFN-GGTLRN 256 (485)
T ss_pred cCCCceEEEEEEECCCCcCChHHHCCCCccHHHHHHHHHHHhHh-------------------hCCeEEEEEe-CCCccC
Confidence 466789999999 999999 699998 999999999998431 1457899999 999999
Q ss_pred eECCeEEEEEEeecCCCCCHHHHHHHHHHHHH
Q 028674 140 QIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171 (205)
Q Consensus 140 vip~~~~~~~diR~~~~~~~~~i~~~i~~~i~ 171 (205)
+||++|++.+++|.......+.+.+.+.+.+.
T Consensus 257 aIp~~a~a~i~~~~~~~~~~~~~~~~~~~~~~ 288 (485)
T PRK15026 257 AIPREAFATIAVAADKVDALKSLVNTYQEILK 288 (485)
T ss_pred CCCCCcEEEEEEChhHHHHHHHHHHHHHHHHH
Confidence 99999999999998765555555555555444
No 59
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.76 E-value=1.5e-18 Score=145.94 Aligned_cols=151 Identities=15% Similarity=0.076 Sum_probs=108.0
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCCceeeecccEEEEEEEEeecCCc
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~~~G~~~Ha 81 (205)
++|++.+..++++|.|+|++|||.| .|++.+..++. +.++++++.++|++ .+.+...|..+++|+++|+++|+
T Consensus 155 ~~L~e~~~~~~g~I~~~ft~dEE~g----~Ga~~l~~~~~--~~~~~~~i~gep~g-~i~~~~~g~~~~~I~v~Gk~aHa 227 (410)
T TIGR01882 155 DYLINHPEIKHGTIRVAFTPDEEIG----RGAHKFDVKDF--NADFAYTVDGGPLG-ELEYETFSAAAAKITIQGNNVHP 227 (410)
T ss_pred HHHHhCCCCCCCCEEEEEECcccCC----cCcchhhhhhc--CccEEEEeCCCCCC-eEEEccccceEEEEEEEEEecCc
Confidence 5666654446899999999999986 48888764432 12223344444433 45666678999999999999999
Q ss_pred cCC-CCCCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHH
Q 028674 82 GLP-HKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (205)
Q Consensus 82 s~p-~~g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~ 160 (205)
+.+ +.++||+..+.+++..+... ..+. .++.+.+.++ + +..|.+|++|++.+|+|+++.++.+
T Consensus 228 ~~~~~~g~nAi~~a~~~~~~l~~~----~~~~----------~t~~~~g~i~-~-g~i~giPd~a~l~~diR~~~~e~~e 291 (410)
T TIGR01882 228 GTAKGKMINAAQIAIDLHNLLPED----DRPE----------YTEGREGFFH-L-LSIDGTVEEAKLHYIIRDFEKENFQ 291 (410)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCc----CCCc----------cccceeEEEE-E-EeEEEecCEEEEEEEEecCCHHHHH
Confidence 975 68999999998876655321 1110 0111234444 3 3467799999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 028674 161 DVMKRLQEYVDDINE 175 (205)
Q Consensus 161 ~i~~~i~~~i~~~~~ 175 (205)
++.++|++.+++++.
T Consensus 292 ~i~~~i~~i~~~~~~ 306 (410)
T TIGR01882 292 ERKELMKRIVEKMNN 306 (410)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
No 60
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.76 E-value=2.6e-17 Score=139.75 Aligned_cols=161 Identities=16% Similarity=0.093 Sum_probs=111.3
Q ss_pred ChhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHccccc--CCCCCC---EEEecC--------------------
Q 028674 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLN--KLKGGP---LYWIDT-------------------- 55 (205)
Q Consensus 1 ~~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~--~~~~d~---~i~~e~-------------------- 55 (205)
|+.|++.+.+++++|.|+|++|||+|+ .|+++++++.... ++.+|+ +++.|+
T Consensus 118 ~~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~~~~~~~~~d~~~~~~~~e~g~~~~~~~v~g~~~~~~~i~ 194 (447)
T TIGR01887 118 MKILKELGLKLKKKIRFIFGTDEETGW---ACIDYYFEHEEAPDIGFTPDAEFPIIYGEKGIVTLEISFKDDTEGDVVLE 194 (447)
T ss_pred HHHHHHcCCCCCCcEEEEEECCcccCc---HhHHHHHHhcCCCCEEEeCCCCcceEEEecCeEEEEEEeccCCCCceeEE
Confidence 356778888889999999999999998 7999988763211 122333 444443
Q ss_pred -------CCCC-----ceeeec-------------------ccE-----EEEEEEEeecCCccCCCCCCCHHHHHHHHHH
Q 028674 56 -------ADKQ-----PCIGTG-------------------GMI-----PWKLHVTGKLFHSGLPHKAINPLELAMEALK 99 (205)
Q Consensus 56 -------~~~~-----i~~~~~-------------------g~~-----~~~i~~~G~~~Has~p~~g~NAi~~l~~~l~ 99 (205)
++.. +.++++ |.. +++|+++|+++|+|.|+.|.|||..|++++.
T Consensus 195 ~~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~ 274 (447)
T TIGR01887 195 SFKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFIAKELEGSFEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLA 274 (447)
T ss_pred EEeCCCcCCccCcceEEEEeccchhHHHHHHHHHhhhcCcceEEEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHH
Confidence 2221 233444 555 7999999999999999999999999999999
Q ss_pred HHH--HHhhc-------CCCC----C-CCccc-CCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHH
Q 028674 100 VIQ--TRFYK-------DFPP----H-PKEQV-YGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMK 164 (205)
Q Consensus 100 ~l~--~~~~~-------~~~~----~-~~~~~-~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~ 164 (205)
.+. +...+ .... . ..... ....+.+++|++.++ ++ +|++|++++|+|++|+++.+++++
T Consensus 275 ~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~nvg~I~-~g-----~p~~~~~~~d~R~~p~~~~e~~~~ 348 (447)
T TIGR01887 275 QLNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDVSGDLTMNVGVID-YE-----NAEAGLIGLNVRYPVGNDPDTMLK 348 (447)
T ss_pred hccCchhHHHHHHHHHHhcCCCCccccCCCcccCCCcCCcEEEEEEEE-Ee-----CCcEEEEEEEEecCCCCCHHHHHH
Confidence 885 21000 0000 0 00000 111234678899887 54 489999999999999999998877
Q ss_pred HHHHHH
Q 028674 165 RLQEYV 170 (205)
Q Consensus 165 ~i~~~i 170 (205)
++.+.+
T Consensus 349 ~i~~~~ 354 (447)
T TIGR01887 349 NELAKE 354 (447)
T ss_pred HHHHHh
Confidence 777544
No 61
>PRK06156 hypothetical protein; Provisional
Probab=99.73 E-value=1.1e-16 Score=138.35 Aligned_cols=163 Identities=14% Similarity=0.129 Sum_probs=111.3
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccC--CCCCC---EEEecCCCC----------------Cc
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNK--LKGGP---LYWIDTADK----------------QP 60 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~--~~~d~---~i~~e~~~~----------------~i 60 (205)
++|++.+.+++++|.|+|++|||.|+ .|++.+++++.... +.+|. ++++|++.. ++
T Consensus 167 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~G~~~~~~~~~~~~~~~~~D~~~~~~~~E~~~~~~~i~~~~~~~~~~~~~l 243 (520)
T PRK06156 167 KAIKDSGLPLARRIELLVYTTEETDG---DPLKYYLERYTPPDYNITLDAEYPVVTAEKGWGTIMATFPKRAADGKGAEI 243 (520)
T ss_pred HHHHHcCCCCCceEEEEEecccccCc---hhHHHHHHhcCCCCeEEeeCCCCceEEEecceEEEEEEecCcCCCCCceeE
Confidence 56778888888999999999999998 79999987753211 11121 345555310 00
Q ss_pred ---------------------------------------eeeecccE---------EEEEEEEeecCCccCCCCCCCHHH
Q 028674 61 ---------------------------------------CIGTGGMI---------PWKLHVTGKLFHSGLPHKAINPLE 92 (205)
Q Consensus 61 ---------------------------------------~~~~~g~~---------~~~i~~~G~~~Has~p~~g~NAi~ 92 (205)
..+++|.. +++|+++|+++|+|.|+.|.|||.
T Consensus 244 ~~~~gG~~~n~ip~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~I~v~Gk~aHsS~P~~G~NAI~ 323 (520)
T PRK06156 244 VAMTGGAFANQIPQTAVATLSGGDPAALAAALQAAAAAQVKRHGGGFSIDFKRDGKDVTITVTGKSAHSSTPESGVNPVT 323 (520)
T ss_pred EEEEcCCcCCCCCCccEEEEecCCHHHHHHHHHHHHHHHHhhcccCceEEEEEcCCeEEEEEEeEECCCCCCCCCccHHH
Confidence 01122433 899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcC--------CC---CCC---C----cccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecC
Q 028674 93 LAMEALKVIQTRFYKD--------FP---PHP---K----EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLT 154 (205)
Q Consensus 93 ~l~~~l~~l~~~~~~~--------~~---~~~---~----~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~ 154 (205)
.+++++.++++..... +. ... . .....+.+..+++++.+. +|. ++|++.+|+|++
T Consensus 324 ~aa~ii~~L~~~l~~~~~~~~~~~i~~~~~~~~~g~~~g~~~~~~~~g~~t~~~~~I~-gg~------~~~~l~iDiR~~ 396 (520)
T PRK06156 324 RLALFLQSLDGDLPHNHAADAARYINDLVGLDYLGEKFGVAYKDDFMGPLTLSPTVVG-QDD------KGTEVTVNLRRP 396 (520)
T ss_pred HHHHHHHhccccccchhHHHHHHHHHHhhCCCCccCcCCccccCCCccCcEEeeeEEE-EeC------CeEEEEEEeeCC
Confidence 9999999986411000 00 000 0 001122234556677666 432 689999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 028674 155 PFYNVTDVMKRLQEYVDDIN 174 (205)
Q Consensus 155 ~~~~~~~i~~~i~~~i~~~~ 174 (205)
|+++.+++.++|++.++++.
T Consensus 397 p~~~~eev~~~I~~~i~~~~ 416 (520)
T PRK06156 397 VGKTPELLKGEIADALAAWQ 416 (520)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999998754
No 62
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.65 E-value=2.3e-15 Score=129.04 Aligned_cols=142 Identities=18% Similarity=0.160 Sum_probs=104.3
Q ss_pred CCcccEEEEEeeccCcCCCCCccHHHHHHccccc-------CCCCCCEEEecCCCCCc------eee--ecccEEEEEEE
Q 028674 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLN-------KLKGGPLYWIDTADKQP------CIG--TGGMIPWKLHV 74 (205)
Q Consensus 10 ~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~-------~~~~d~~i~~e~~~~~i------~~~--~~g~~~~~i~~ 74 (205)
..+++|.++|++|||+|+ .|++++....... ....+.+++++++...+ .+. ++|..+++|++
T Consensus 126 ~~~~~i~~~~~~dEE~g~---~Gs~~l~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~~i~~ 202 (477)
T TIGR01893 126 LKHPPLELLFTVDEETGM---DGALGLDENWLSGKILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGYQISL 202 (477)
T ss_pred CCCCCEEEEEEeccccCc---hhhhhcChhhcCCcEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEEEEEE
Confidence 356799999999999987 7999987543211 01122233333332211 111 47899999999
Q ss_pred Ee-ecCCcc-CCCCC-CCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEe
Q 028674 75 TG-KLFHSG-LPHKA-INPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDV 151 (205)
Q Consensus 75 ~G-~~~Has-~p~~g-~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~di 151 (205)
+| +++|++ .|..+ .||+..+++++.++.... ..+++.+. +|...|+||++|++++|+
T Consensus 203 ~G~~~~Hsg~~p~~~r~nAi~~aa~~i~~l~~~~-------------------~~~v~~~~-gg~~~N~ip~~~~~~~di 262 (477)
T TIGR01893 203 KGLKGGHSGADIHKGRANANKLMARVLNELKENL-------------------NFRLSDIK-GGSKRNAIPREAKALIAI 262 (477)
T ss_pred eCcCCCcCccccCCCCcCHHHHHHHHHHhhhhcC-------------------CeEEEEEe-CCCcccccCCceEEEEEE
Confidence 99 999997 58888 599999999999886531 13577787 899999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHh
Q 028674 152 RLTPFYNVTDVMKRLQEYVDDIN 174 (205)
Q Consensus 152 R~~~~~~~~~i~~~i~~~i~~~~ 174 (205)
|.......+.+.+.+.+.+.+..
T Consensus 263 R~~~~~~l~~~~~~~~~~~~~~~ 285 (477)
T TIGR01893 263 DENDVKLLENLVKNFQSKFKSEY 285 (477)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHh
Confidence 99887777777777777766655
No 63
>PRK08554 peptidase; Reviewed
Probab=99.57 E-value=4.4e-14 Score=119.82 Aligned_cols=162 Identities=16% Similarity=0.105 Sum_probs=96.8
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCCCCceeeecccEEEEEE--------
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLH-------- 73 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~-------- 73 (205)
+.|++. .++++|.|+|++|||+|+ .+..+++++.......+|++|+.||+...+.+++++..+++++
T Consensus 116 ~~l~~~--~~~~~i~l~~~~dEE~g~---~~~~~~~~~~~~~~~~~~~~iv~Ept~~~~~~~~~kg~~~~~~~~~~~~~~ 190 (438)
T PRK08554 116 KELSKE--PLNGKVIFAFTGDEEIGG---AMAMHIAEKLREEGKLPKYMINADGIGMKPIIRRRKGFGVTIRVPSEKVKV 190 (438)
T ss_pred HHHHhc--CCCCCEEEEEEcccccCc---cccHHHHHHHHhcCCCCCEEEEeCCCCCcchhhcCCceEEEEEeccccccc
Confidence 455553 467899999999999987 4555666543223345789999999887655443333345444
Q ss_pred ------------EEee-cCCccCCCCCCC--HHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEec-CCC-
Q 028674 74 ------------VTGK-LFHSGLPHKAIN--PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSY-PGG- 136 (205)
Q Consensus 74 ------------~~G~-~~Has~p~~g~N--Ai~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~-~g~- 136 (205)
+.|. .+|++.|..|+| |+..+++++.++...... +... .....+ .+..++++...- .|.
T Consensus 191 ~g~~~~~~~~~~~~~~~~~Ha~~~~~g~~~~~i~~~~~~~~~~~~~~~~-~~g~--~~~~~~-~~~~~~~~~~~p~~g~n 266 (438)
T PRK08554 191 KGKLREQTFEIRTPVVETRHAAYFLPGVDTHPLIAASHFLRESNVLAVS-LEGK--FLKGNV-VPGEVTLTYLEPGEGEE 266 (438)
T ss_pred ccceeeeeeceeecccCccccccccCCcCchHHHHHHHHHhhcCceEEE-Eeee--eeecCc-ccceeEEEEecCCCCcc
Confidence 3444 499998766665 477777766655422100 0000 000000 011111111110 111
Q ss_pred ----------------------------------cceeE---CCeEEEEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028674 137 ----------------------------------GINQI---PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 173 (205)
Q Consensus 137 ----------------------------------~~nvi---p~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~ 173 (205)
..|++ |++|++++|+|+.+ .+.+++.++|++.+++.
T Consensus 267 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~n~~~i~~g~a~~~~DiR~~~-~~~e~v~~~i~~~~~~~ 339 (438)
T PRK08554 267 VEVDLGLTRLLKAIVPLVRAPIKAEKYSDYGVSITPNVYSFAEGKHVLKLDIRAMS-YSKEDIERTLKEVLEFN 339 (438)
T ss_pred ccccccHHHHHHHHHHHHHHhhccccccccceeeccceEEecCCeEEEEEEEEecC-CCHHHHHHHHHHHhhcc
Confidence 33444 99999999999987 68899999999988764
No 64
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=98.96 E-value=1e-08 Score=83.56 Aligned_cols=171 Identities=21% Similarity=0.337 Sum_probs=112.3
Q ss_pred ChhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCC--CCCCEEEecC---CCCCc--eeeecccEEEEEE
Q 028674 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKL--KGGPLYWIDT---ADKQP--CIGTGGMIPWKLH 73 (205)
Q Consensus 1 ~~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~--~~d~~i~~e~---~~~~i--~~~~~g~~~~~i~ 73 (205)
|+++++.++.++-||.|+|...||+|+ .|...+++... +++ +.|++.+.+. ....+ .+|.+|.+.+.++
T Consensus 144 v~a~~~~g~~lpvnv~f~~EgmEEsgS---~~L~~l~~~~k-D~~~~~vD~vciSdnyWlg~kkPcltyGlRG~~yf~i~ 219 (473)
T KOG2276|consen 144 VKALQQLGIDLPVNVVFVFEGMEESGS---EGLDELIEKEK-DKFFKDVDFVCISDNYWLGTKKPCLTYGLRGVIYFQIE 219 (473)
T ss_pred HHHHHHhCccccceEEEEEEechhccC---ccHHHHHHHHh-hhhhccCCEEEeeCceeccCCCcccccccccceeEEEE
Confidence 478889999999999999999999999 68887776532 221 3466665543 23344 4688999999999
Q ss_pred EEe--ecCCccCC-CCCCCHHHHHHHHHHHHHHH--------hhcCCCCCCC---------------------cccCCCC
Q 028674 74 VTG--KLFHSGLP-HKAINPLELAMEALKVIQTR--------FYKDFPPHPK---------------------EQVYGFE 121 (205)
Q Consensus 74 ~~G--~~~Has~p-~~g~NAi~~l~~~l~~l~~~--------~~~~~~~~~~---------------------~~~~~~~ 121 (205)
+.| +-.||+.- -.-.-|+..|..++..|.+. +.+.+.|... .....+.
T Consensus 220 v~g~~~DlHSGvfGG~~hE~m~dL~~~ms~Lv~~~~~Ilipgiy~~vaplteeE~~~y~~I~f~~~e~~~~tg~~~l~~~ 299 (473)
T KOG2276|consen 220 VEGPSKDLHSGVFGGVVHEAMNDLVLVMSSLVDIQGRILIPGIYEDVAPLTEEEDSIYDDIDFDVEEFKEATGSQMLPTD 299 (473)
T ss_pred EeecccccccccccchhHHHHHHHHHHHHHhcCcCCcEeccchhhhccCCChHHHhhhhcceeeHhhhhccccccccccC
Confidence 999 66898843 11134455555555554321 1111121110 0000000
Q ss_pred ---------C-CceEee----eEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHhhc
Q 028674 122 ---------T-PSTMKP----TQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (205)
Q Consensus 122 ---------~-~~~~~~----g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~ 176 (205)
. .+++++ |.++ +.++..|||.+....+.+|..|.++++.+.+.+++.+++.-++
T Consensus 300 ~k~~~l~~rWryPSLsihgIeGaFs-~pG~kTVIP~kVigkfSiRlVP~md~e~verlv~~yl~~~f~~ 367 (473)
T KOG2276|consen 300 DKKRILMHRWRYPSLSIHGIEGAFS-GPGAKTVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKVFAE 367 (473)
T ss_pred chHHHhhhhcccCccceecccceee-CCCceEEeehhheeeeEEEecCCCCHHHHHHHHHHHHHHHHHh
Confidence 0 122333 4454 6678899999999999999999999999988888888777553
No 65
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=98.80 E-value=1.4e-08 Score=83.66 Aligned_cols=155 Identities=16% Similarity=0.133 Sum_probs=110.4
Q ss_pred CCCcccEEEEEeeccCcCCCCCccHHHHHHccc--ccC--CCCCCEEEecCCC-------CC-ceeeecccEEEEEEEEe
Q 028674 9 LKLKSTVIAVFIASEENSAITGVGVDALVKDGL--LNK--LKGGPLYWIDTAD-------KQ-PCIGTGGMIPWKLHVTG 76 (205)
Q Consensus 9 ~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~--~~~--~~~d~~i~~e~~~-------~~-i~~~~~g~~~~~i~~~G 76 (205)
...+|||.|+.+||||..+ .|++..+.... .++ ++.-.+|+.+++. ++ +..|..|..-.-.-+.|
T Consensus 159 ~~~~GNlLf~a~pdEE~~s---~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryvYtGtiGKLLp~f~vvG 235 (553)
T COG4187 159 TDRQGNLLFMAVPDEEVES---RGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYVYTGTIGKLLPFFFVVG 235 (553)
T ss_pred CCCCCcEEEEeccchhhhc---ccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEEEeccchhhcceeEEEe
Confidence 4788999999999999988 79887765421 122 3333566666642 22 56789999999999999
Q ss_pred ecCCccCCCCCCCHHHHHHHHHHHHHHH--hhcCCCCCCCcccCCCCCCceEeeeEEecCCCccee-ECCeEEEEEEeec
Q 028674 77 KLFHSGLPHKAINPLELAMEALKVIQTR--FYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQ-IPGECTVSGDVRL 153 (205)
Q Consensus 77 ~~~Has~p~~g~NAi~~l~~~l~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nv-ip~~~~~~~diR~ 153 (205)
+..|++.|..|+||-..++.+..+++.. +.++. .++--.+|+.+..-. -.+.+|| +|.++.+.+++-+
T Consensus 236 ~etHvG~~f~Gvnan~maSei~~~le~N~~l~dr~------~Ge~t~PPs~L~qkD---lKe~Y~VqTp~~a~~~fN~l~ 306 (553)
T COG4187 236 CETHVGYPFEGVNANFMASEITRRLELNADLADRV------DGEITPPPSCLEQKD---LKESYNVQTPERAWLYFNWLY 306 (553)
T ss_pred eccccCCcccCCCHHHHHHHHHHHhhcChhhhhhh------CCeeCCCcHhhhhhh---hhhhccccCcchhhhhheehh
Confidence 9999999999999999999998887632 11111 122222333333233 2456777 8999999999966
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhc
Q 028674 154 TPFYNVTDVMKRLQEYVDDINEN 176 (205)
Q Consensus 154 ~~~~~~~~i~~~i~~~i~~~~~~ 176 (205)
. +.+.+++.+++++.+++.+.+
T Consensus 307 h-~~ta~~~~d~l~~~a~~A~~e 328 (553)
T COG4187 307 H-SRTAKELFDRLKEEAETAAEE 328 (553)
T ss_pred h-cCCHHHHHHHHHHHHHHHHHH
Confidence 5 588899999998887776654
No 66
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=98.51 E-value=6.6e-08 Score=80.81 Aligned_cols=145 Identities=14% Similarity=0.096 Sum_probs=108.3
Q ss_pred CCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCC-CCCceeeecccEEEEEEEEeecCCccC-CCC
Q 028674 9 LKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFHSGL-PHK 86 (205)
Q Consensus 9 ~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~-~~~i~~~~~g~~~~~i~~~G~~~Has~-p~~ 86 (205)
..++++|++.|+++||.|+ +|+..+.- ..+..++++..+++ .+.+.+...+...+++++.|+.+|++. +..
T Consensus 165 ~i~h~~i~~g~s~~Ee~g~---rg~~~~~~----a~f~a~~ay~iDGg~~g~i~~ea~~~~~~~~~~~g~~~h~~~a~~~ 237 (414)
T COG2195 165 EIPHGGIRGGFSPDEEIGG---RGAANKDV----ARFLADFAYTLDGGPVGEIPREAFNAAAVRATIVGPNVHPGSAKGK 237 (414)
T ss_pred cccccCeEEEecchHHhhh---hhhhhccH----HhhhcceeEecCCCccCeeeeeccchheeeeeeeccCcCccchHHH
Confidence 4677999999999999997 78876653 34556788887743 456778888889999999999999985 677
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCCCCcccCCCCCCceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHH
Q 028674 87 AINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166 (205)
Q Consensus 87 g~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i 166 (205)
.+||+..+.++...+... ..+ . .++.+.|..+ .+...|.+.+++.....+|...........+.+
T Consensus 238 ~i~a~~~a~e~~~~~~~~---~~~-e----------~t~~~~Gv~~-~~~~~~~V~~~s~~~~~iR~~d~~~~~s~~~~~ 302 (414)
T COG2195 238 MINALLLAAEFILELPLE---EVP-E----------LTEGPEGVYH-LGDSTNSVEETSLNLAIIRDFDNLLFRARKDSM 302 (414)
T ss_pred HhhHHHhhhhhhhcCCcc---ccc-c----------cccccceEEe-ccccccchhhhhhhhhhhhhcchhHHHHhHHHH
Confidence 899999888877765421 111 1 2445667776 888899999999999999999876655555555
Q ss_pred HHHHHHHhh
Q 028674 167 QEYVDDINE 175 (205)
Q Consensus 167 ~~~i~~~~~ 175 (205)
++.+.+...
T Consensus 303 ~~~~~~~~~ 311 (414)
T COG2195 303 KDVVEEMAA 311 (414)
T ss_pred HHHHHHHHH
Confidence 555555444
No 67
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=97.80 E-value=1.1e-05 Score=60.45 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=45.9
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCc-cHHHHHHcccccCCCCCCEEEecCCCCCce
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGV-GVDALVKDGLLNKLKGGPLYWIDTADKQPC 61 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~-G~~~~~~~~~~~~~~~d~~i~~e~~~~~i~ 61 (205)
+.|++.+.+++++|.|+|+++||+++ . |++.+++++....+++|+++.+|++.....
T Consensus 49 ~~l~~~~~~~~~~i~~~~~~~EE~g~---~~g~~~l~~~~~~~~~~~~~~~~~e~~~~~~~ 106 (189)
T PF01546_consen 49 KALKESGDDLPGNIIFLFTPDEEIGS---IGGAKHLLEEGAFFGLHPDYVIIGEPTGKGGV 106 (189)
T ss_dssp HHHHHTTTTCSSEEEEEEESTCCGTS---TTHHHHHHHHCEEEEEEESEEEECECETTSEE
T ss_pred HHHHhccccccccccccccccccCCC---cchhhhhhhhcccccccccccccccccccccc
Confidence 55666788999999999999999998 5 999999986434455788888888766553
No 68
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=94.41 E-value=0.12 Score=44.70 Aligned_cols=48 Identities=8% Similarity=0.016 Sum_probs=39.2
Q ss_pred ceEeeeEEecCCCcceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHhhcch
Q 028674 124 STMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIE 178 (205)
Q Consensus 124 ~~~~~g~i~~~g~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~~~ 178 (205)
.++|++.++ ..|+++.+.+++|++++++.+++.+.+++.++....+++
T Consensus 338 ~t~n~g~i~-------~~~~~~~~~i~~R~~~~~~~~~i~~~i~~~~~~~~~~v~ 385 (477)
T TIGR01893 338 SSLNLGVVK-------TKENKVIFTFLIRSSVESDKDYVTEKIESIAKLAGARVE 385 (477)
T ss_pred eeeeEEEEE-------EcCCEEEEEEEeCCCCchhHHHHHHHHHHHhhhcCeEEE
Confidence 566777776 338899999999999999999999999999986544444
No 69
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=94.20 E-value=0.016 Score=43.05 Aligned_cols=51 Identities=27% Similarity=0.257 Sum_probs=36.7
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecC
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDT 55 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~ 55 (205)
|.|++.+.+++.+|+|+|..+||.|. .|+++++++......+..++|+.+.
T Consensus 39 r~l~~~~~~~~~~i~fv~~~~EE~gl---~GS~~~~~~~~~~~~~~~~~inlD~ 89 (179)
T PF04389_consen 39 RVLKELKPQPKRTIRFVFFDGEEQGL---LGSRAFVEHDHEELDNIAAVINLDM 89 (179)
T ss_dssp HHHHHSTHSSSEEEEEEEESSGGGTS---HHHHHHHHHHHCHHHHEEEEEEECS
T ss_pred HHHHHhhcccCccEEEEEecccccCc---cchHHHHHhhhcccccceeEEeccc
Confidence 56777677888999999999999998 8999999742111112235666664
No 70
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=93.48 E-value=0.088 Score=43.71 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=32.5
Q ss_pred CCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCC
Q 028674 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD 57 (205)
Q Consensus 10 ~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~ 57 (205)
+++.+|+++|++.||.|. +||+..... ++||.+|..+.+.
T Consensus 197 ~~~~~l~~~~tvqEEvG~---rGA~~aa~~-----i~pD~aI~vDv~~ 236 (350)
T TIGR03107 197 ELPNTLIAGANVQEEVGL---RGAHVSTTK-----FNPDIFFAVDCSP 236 (350)
T ss_pred CCCceEEEEEEChhhcCc---hhhhhHHhh-----CCCCEEEEEecCC
Confidence 467899999999999998 799866432 5689999888754
No 71
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=93.23 E-value=0.077 Score=42.93 Aligned_cols=44 Identities=27% Similarity=0.283 Sum_probs=32.1
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecC
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDT 55 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~ 55 (205)
+.|++. .+..+|+++|++.||.|. +|+.....+ ++||.+|..+.
T Consensus 147 ~~l~~~--~~~~~v~~v~tvqEEvG~---rGA~~aa~~-----i~PD~ai~vD~ 190 (292)
T PF05343_consen 147 RELKEK--ELDVDVYFVFTVQEEVGL---RGAKTAAFR-----IKPDIAIAVDV 190 (292)
T ss_dssp HHHTTS--S-SSEEEEEEESSCTTTS---HHHHHHHHH-----H-CSEEEEEEE
T ss_pred HHHhhc--CCCceEEEEEEeeeeecC---cceeecccc-----cCCCEEEEEee
Confidence 344443 455899999999999998 899877654 45788887764
No 72
>PRK09961 exoaminopeptidase; Provisional
Probab=92.52 E-value=0.17 Score=42.01 Aligned_cols=39 Identities=26% Similarity=0.201 Sum_probs=31.9
Q ss_pred CCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCC
Q 028674 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA 56 (205)
Q Consensus 10 ~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~ 56 (205)
++..+|+++|+..||.|. +|++..... ++||.+|..+.+
T Consensus 185 ~~~~~v~~~~tvqEEvG~---rGa~~aa~~-----i~pd~~I~vDv~ 223 (344)
T PRK09961 185 ELPAEVWLVASSSEEVGL---RGGQTATRA-----VSPDVAIVLDTA 223 (344)
T ss_pred CCCceEEEEEEcccccch---HHHHHHHhc-----cCCCEEEEEecc
Confidence 467899999999999998 798877542 468999988865
No 73
>PRK09864 putative peptidase; Provisional
Probab=92.50 E-value=0.14 Score=42.54 Aligned_cols=39 Identities=23% Similarity=0.161 Sum_probs=32.3
Q ss_pred CcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCC
Q 028674 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD 57 (205)
Q Consensus 11 ~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~ 57 (205)
+..+|+++|++.||.|. +||+..... ++||.+|..+.+.
T Consensus 193 ~~~~vy~v~TvQEEvGl---rGA~~aa~~-----i~PDiaIavDvt~ 231 (356)
T PRK09864 193 PEITLYGVGSVEEEVGL---RGAQTSAEH-----IKPDVVIVLDTAV 231 (356)
T ss_pred CCCeEEEEEEcchhcch---HHHHHHHhc-----CCCCEEEEEeccc
Confidence 77899999999999998 899877543 5689999888654
No 74
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=92.40 E-value=0.53 Score=40.94 Aligned_cols=45 Identities=9% Similarity=-0.042 Sum_probs=35.8
Q ss_pred ceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHhhcchhccC
Q 028674 138 INQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDT 182 (205)
Q Consensus 138 ~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~ 182 (205)
.+...+++++.+++|++++.+.+++.+++++..+....+++....
T Consensus 351 v~~~~~~~~i~~~~Rs~~~~~~~~i~~~i~~~~~~~g~~~~~~~~ 395 (485)
T PRK15026 351 VTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGA 395 (485)
T ss_pred EEEeCCEEEEEEEecCCCchHHHHHHHHHHHHHHHcCcEEEEeCC
Confidence 446678899999999999999999999999987766555554443
No 75
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=91.34 E-value=0.18 Score=41.83 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=33.3
Q ss_pred cCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecCCC
Q 028674 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD 57 (205)
Q Consensus 8 ~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~~~ 57 (205)
+.+++.+++|+|++.||.|. +||+.... .++||.+|..+.+.
T Consensus 197 ~~~~~~~vy~v~tvqEEVGl---rGA~~~a~-----~i~pd~aiavd~~~ 238 (355)
T COG1363 197 GIELPADVYFVASVQEEVGL---RGAKTSAF-----RIKPDIAIAVDVTP 238 (355)
T ss_pred cCCCCceEEEEEecchhhcc---chhhcccc-----ccCCCEEEEEeccc
Confidence 46888999999999999998 78875543 35688999887653
No 76
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=90.90 E-value=0.18 Score=41.64 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=27.6
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcc
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDG 40 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~ 40 (205)
+.|++. .++.+|.|++.++||.|. .|+++++++.
T Consensus 156 r~l~~~--~~~~~I~fv~~~~EE~Gl---~GS~~~~~~~ 189 (346)
T PRK10199 156 ERLKNV--PTEYGIRFVATSGEEEGK---LGAENLLKRM 189 (346)
T ss_pred HHHhhC--CCCCcEEEEEECCcccCc---HHHHHHHHhc
Confidence 455544 466799999999999998 7999999873
No 77
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=87.56 E-value=0.36 Score=40.03 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=21.6
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCC
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSA 27 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~ 27 (205)
+.|++.+.+++++|+++|+++||.|+
T Consensus 196 ~~l~~~~~~~~~~v~~~~t~qEEvG~ 221 (343)
T TIGR03106 196 KAIVEHKVPLPVDVHPLFTITEEVGS 221 (343)
T ss_pred HHHHhcCCCCCceEEEEEECCcccCc
Confidence 56666666788999999999999985
No 78
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=75.12 E-value=7 Score=25.09 Aligned_cols=34 Identities=6% Similarity=0.135 Sum_probs=27.6
Q ss_pred EEEEEEeecCCCCCHHHHHHHHHHHHHHHhhcch
Q 028674 145 CTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIE 178 (205)
Q Consensus 145 ~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~~~ 178 (205)
.+..+-+|.+++.+..++.++|.+.++-.+..+.
T Consensus 9 f~~tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~ 42 (80)
T cd06406 9 FKYTVAIQVARGLSYATLLQKISSKLELPAEHIT 42 (80)
T ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHhCCCchhcE
Confidence 5568889999999999999999998876544443
No 79
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=71.07 E-value=3.8 Score=34.89 Aligned_cols=35 Identities=34% Similarity=0.289 Sum_probs=29.2
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHccc
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGL 41 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~ 41 (205)
|.|++.. ++.+|+|++...||.|. .|+.++..+..
T Consensus 241 r~l~~~~--p~~~v~f~~~~aEE~Gl---~GS~~~~~~~~ 275 (435)
T COG2234 241 RVLKGNP--PKRTVRFVAFGAEESGL---LGSEAYVKRLS 275 (435)
T ss_pred HHHhcCC--CCceEEEEEecchhhcc---cccHHHHhcCC
Confidence 4566554 88899999999999998 79999998754
No 80
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=53.25 E-value=37 Score=21.69 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=29.5
Q ss_pred eEEEEEEeecCCCCCHHHHHHHHHHHHHHHhhcch
Q 028674 144 ECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIE 178 (205)
Q Consensus 144 ~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~~~ 178 (205)
++++++.+|.+++.+..++.+.|.+.+.-......
T Consensus 4 h~~fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~ 38 (78)
T cd06411 4 QCAFTVALRAPRGADVSSLRALLSQALPQQAQRGQ 38 (78)
T ss_pred EEEEEEEEEccCCCCHHHHHHHHHHHhcCChhhcE
Confidence 57899999999999999999999998876655433
No 81
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=52.77 E-value=11 Score=34.48 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=29.5
Q ss_pred hhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcc
Q 028674 4 LGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDG 40 (205)
Q Consensus 4 l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~ 40 (205)
+++.+++|.++|+|+.-.+||-|. .|+-.+++..
T Consensus 388 ~~k~gwrP~RtI~F~sWdAeEfGl---iGStE~~E~~ 421 (702)
T KOG2195|consen 388 LKKRGWRPRRTILFASWDAEEFGL---LGSTEWAEEY 421 (702)
T ss_pred HHHcCCCccceEEEEEccchhccc---cccHHHHHHH
Confidence 456779999999999999999998 7988888754
No 82
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=52.21 E-value=7.8 Score=35.81 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=36.9
Q ss_pred hhhhcccCCCcccEEEEEeeccCcCCCCCccHHHHHHcccccCCCCCCEEEecC
Q 028674 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDT 55 (205)
Q Consensus 2 ~~l~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~~~~~~~~~d~~i~~e~ 55 (205)
|.+......+..+|.|+|-.+||.+. .|+..++.++.... +..++++.|.
T Consensus 176 Rv~s~~~~~l~~~vVFLfNgaEE~~L---~gsH~FItQH~w~~-~~ka~INLea 225 (834)
T KOG2194|consen 176 RVLSKSDKLLTHSVVFLFNGAEESGL---LGSHAFITQHPWSK-NIKAVINLEA 225 (834)
T ss_pred HHhhcCCCcccccEEEEecCcccchh---hhcccceecChhhh-hhheEEeccc
Confidence 45566666778999999999999988 79999998655432 2336676664
No 83
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.17 E-value=89 Score=20.38 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=14.4
Q ss_pred EEEEEeecCCCCCHHHHHHHHH
Q 028674 146 TVSGDVRLTPFYNVTDVMKRLQ 167 (205)
Q Consensus 146 ~~~~diR~~~~~~~~~i~~~i~ 167 (205)
-+++++|+|.+++.+. .++++
T Consensus 4 lv~Mtv~~PdsMdad~-~er~~ 24 (98)
T COG4829 4 LVTMTVRVPDSMDADA-VERVR 24 (98)
T ss_pred EEEEEEEcCCCCCHHH-HHHHH
Confidence 4678899999888554 33443
No 84
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.32 E-value=81 Score=19.37 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=27.2
Q ss_pred CCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHhhc
Q 028674 142 PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (205)
Q Consensus 142 p~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~ 176 (205)
.+...+.+.+..++..+.+++.+.+++..++.+..
T Consensus 36 ~~~f~~~~~v~~p~~~~~~~l~~~l~~l~~~l~l~ 70 (75)
T cd04870 36 HGRLSLGILVQIPDSADSEALLKDLLFKAHELGLQ 70 (75)
T ss_pred cCeeEEEEEEEcCCCCCHHHHHHHHHHHHHHcCce
Confidence 35677888888887778888888888888776544
No 85
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=41.81 E-value=83 Score=19.37 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=26.2
Q ss_pred CeEEEEEEeecCCCCCHHHHHHHHHHHHHHHhhc
Q 028674 143 GECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (205)
Q Consensus 143 ~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~ 176 (205)
+...+.+.+..+...+..++.+.|++..++++..
T Consensus 43 ~~~~~~~~v~~p~~~~~~~l~~~l~~l~~~~~~~ 76 (81)
T cd04869 43 PLFKAQATLALPAGTDLDALREELEELCDDLNVD 76 (81)
T ss_pred ceEEEEEEEecCCCCCHHHHHHHHHHHHHHhcce
Confidence 5677788888887677888888888888776543
No 86
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=37.84 E-value=46 Score=22.12 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=31.3
Q ss_pred EEEEeecCCCCCHHHHHHHHHHHHHHHhhcchhccCcCCCCCCCCCCCCcc-cCCCCcCC
Q 028674 147 VSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIR-GRHPYIDF 205 (205)
Q Consensus 147 ~~~diR~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~ 205 (205)
..+|+|-+ +..++-..++..++++.+.+.- . .+........+|+ ++++.|.|
T Consensus 8 a~vdv~D~--e~y~~Y~~~~~~a~~~~Ggr~L--v---RGG~v~~lEG~w~ptr~vviEF 60 (96)
T COG5470 8 ADVDVRDP--EQYKDYVSKAKPAIEKFGGRYL--V---RGGEVETLEGEWRPTRNVVIEF 60 (96)
T ss_pred EEEeecCH--HHHHHHHHHhHHHHHHhCCeeE--e---eCCCeeeccCCCCcccEEEEEc
Confidence 34445444 5567777778888888766522 1 2333444444588 88888766
No 87
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=35.39 E-value=1.1e+02 Score=19.29 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=28.1
Q ss_pred eeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHhhc
Q 028674 139 NQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (205)
Q Consensus 139 nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~ 176 (205)
|-+|+.---++++-+.-+.++++.++++.+.++++.++
T Consensus 7 ~~i~G~ei~yl~iv~~~~~d~d~Al~eM~e~A~~lGAn 44 (74)
T TIGR03884 7 DEIPGLQLYYLGIVSTESDNVDEIVENLREKVKAKGGM 44 (74)
T ss_pred ccCCCeEEEEEEEEEEecCCHHHHHHHHHHHHHHcCCC
Confidence 34555433555666666779999999999999999876
No 88
>PHA02448 hypothetical protein
Probab=32.52 E-value=1.1e+02 Score=21.68 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=33.2
Q ss_pred CCCEEEecCC----CCCceeeecccEEEEEEEEeecCCc---cCCCCCCCHHHHHH
Q 028674 47 GGPLYWIDTA----DKQPCIGTGGMIPWKLHVTGKLFHS---GLPHKAINPLELAM 95 (205)
Q Consensus 47 ~d~~i~~e~~----~~~i~~~~~g~~~~~i~~~G~~~Ha---s~p~~g~NAi~~l~ 95 (205)
.|-...+||- ++.+...+-|..|+++++.|...-+ +.-..|.||+..+.
T Consensus 46 ~dplwtwep~a~~~~glp~~d~~gglwirlt~~g~tr~gygd~~gk~gpnavkeai 101 (192)
T PHA02448 46 VDPLWTWEPFAVGDNGLPLLDEHGGLWIRLTLCGVTRIGYGDAGGKKGPNAVKEAI 101 (192)
T ss_pred cCccccccccccCCCCCcccccCCCeEEEEEEeccceeeccccCCCcCchHHHHHH
Confidence 3445566663 3455677889999999999966333 23356889987664
No 89
>PF03822 NAF: NAF domain; InterPro: IPR004041 The NAF domain is a 24 amino acid domain that is found in a plant-specific subgroup of serine-threonine protein kinases (CIPKs), that interact with calcineurin B-like calcium sensor proteins (CBLs). Whereas the N-terminal part of CIPKs comprises a conserved catalytic domain typical of Ser-Thr kinases, the much less conserved C-terminal domain appears to be unique to this subgroup of kinases. The only exception is the NAF domain that forms an 'island of conservation' in this otherwise variable region. The NAF domain has been named after the prominent conserved amino acids Asn-Ala-Phe. It represents a minimum protein interaction module that is both necessary and sufficient to mediate the interaction with the CBL calcium sensor proteins []. The secondary structure of the NAF domain is currently not known, but secondary structure computation of the C-terminal region of Arabidopsis thaliana CBL-interacting protein kinase 1 revealed a long helical structure [].; GO: 0007165 signal transduction; PDB: 2ZFD_B 2EHB_D.
Probab=27.55 E-value=47 Score=20.24 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=19.0
Q ss_pred eecCCCCCHHHHHHHHHHHHHHHhhc
Q 028674 151 VRLTPFYNVTDVMKRLQEYVDDINEN 176 (205)
Q Consensus 151 iR~~~~~~~~~i~~~i~~~i~~~~~~ 176 (205)
.|+.....+.++++++++.++.....
T Consensus 35 ~RF~S~~~~~~Ii~klEe~a~~~~~~ 60 (63)
T PF03822_consen 35 TRFTSKEPASEIIEKLEEIAKKLGFR 60 (63)
T ss_dssp EEEEESS-HHHHHHHHHHHHHHTTEE
T ss_pred ceEecCCCHHHHHHHHHHHHHhcCce
Confidence 35555666799999999999876543
No 90
>PRK02813 putative aminopeptidase 2; Provisional
Probab=27.11 E-value=55 Score=28.13 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=17.4
Q ss_pred cccEEEEEeeccCcCCCCCccHH
Q 028674 12 KSTVIAVFIASEENSAITGVGVD 34 (205)
Q Consensus 12 ~~~i~~~~~~dEE~g~~~~~G~~ 34 (205)
...+++++...||.|+..-.||.
T Consensus 252 ~~~~~~~~~d~EEVGs~~~~GA~ 274 (428)
T PRK02813 252 DATNVLAAFDHEEVGSATKQGAD 274 (428)
T ss_pred CCeEEEEEEecCccCCCCCcccC
Confidence 67899999999999982112666
No 91
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=25.50 E-value=1.5e+02 Score=18.82 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=25.3
Q ss_pred CCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHhhc
Q 028674 142 PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (205)
Q Consensus 142 p~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~ 176 (205)
+....+.+++|-++ .+.+.+.+.+.+..++.+-.
T Consensus 46 ~~~~~~e~~v~~~~-~~~~~lr~~L~~la~elgvD 79 (84)
T cd04871 46 SPKACVEFSVRGQP-ADLEALRAALLELASELNVD 79 (84)
T ss_pred CCcEEEEEEEeCCC-CCHHHHHHHHHHHhcccCce
Confidence 45567889999766 78888888888777666543
No 92
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=24.34 E-value=75 Score=24.85 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=24.5
Q ss_pred CCCcccEEEEEeeccCcCCCCCccHHHHHHc
Q 028674 9 LKLKSTVIAVFIASEENSAITGVGVDALVKD 39 (205)
Q Consensus 9 ~~~~~~i~~~~~~dEE~g~~~~~G~~~~~~~ 39 (205)
..++++|.|.|..+|-.+- .|...|+.+
T Consensus 47 ~~~~knV~F~~F~GEs~dY---iGS~R~vyD 74 (234)
T PF05450_consen 47 SNLNKNVLFAFFNGESFDY---IGSSRFVYD 74 (234)
T ss_pred ccccCcEEEEEecCccccc---cchHHHHHH
Confidence 3678999999999999987 799999876
No 93
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=23.87 E-value=1.9e+02 Score=17.83 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=22.5
Q ss_pred ceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHh
Q 028674 138 INQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN 174 (205)
Q Consensus 138 ~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~~ 174 (205)
..+..++..+.+-+..++. +.+++.+.+.+..++..
T Consensus 35 ~~~~~~~f~~~~~v~~~~~-~~~~l~~~L~~l~~~~~ 70 (76)
T PF13740_consen 35 QAVLGGRFTLIMLVSIPED-SLERLESALEELAEELG 70 (76)
T ss_dssp EEEETTEEEEEEEEEESHH-HHHHHHHHHHHHHHHTT
T ss_pred EEEEcCeEEEEEEEEeCcc-cHHHHHHHHHHHHHHCC
Confidence 3456678888888888732 45555555555555544
No 94
>PRK06156 hypothetical protein; Provisional
Probab=23.47 E-value=2.1e+02 Score=25.22 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=19.0
Q ss_pred EeeeEEecCCCcceeECCeEEEEE
Q 028674 126 MKPTQWSYPGGGINQIPGECTVSG 149 (205)
Q Consensus 126 ~~~g~i~~~g~~~nvip~~~~~~~ 149 (205)
.++..++ ||+..|+||+.|.+.+
T Consensus 241 ~~l~~~~-gG~~~n~ip~~a~~~~ 263 (520)
T PRK06156 241 AEIVAMT-GGAFANQIPQTAVATL 263 (520)
T ss_pred eeEEEEE-cCCcCCCCCCccEEEE
Confidence 3466777 8999999999999874
No 95
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=21.99 E-value=1.7e+02 Score=17.64 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=23.3
Q ss_pred ceeECCeEEEEEEeecCCCCCHHHHHHHHHHHHHHH
Q 028674 138 INQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 173 (205)
Q Consensus 138 ~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~i~~~ 173 (205)
..+..+++.+.+.+-++.....+.+.+.+++.+..+
T Consensus 29 i~i~~~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l 64 (72)
T PF01883_consen 29 ISIEGGKVSVSLELPTPACPAAEPLREEIREALKAL 64 (72)
T ss_dssp EEECTCEEEEEE--SSTTHTTHHHHHHHHHHHHHTS
T ss_pred EEEECCEEEEEEEECCCCchHHHHHHHHHHHHHHhC
Confidence 345567888888887766555677777777777644
Done!