BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028676
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WSC|A Chain A, Crystal Structure Of St0229, Function Unknown Protein From
Sulfolobus Tokodaii
pdb|1WSC|B Chain B, Crystal Structure Of St0229, Function Unknown Protein From
Sulfolobus Tokodaii
Length = 230
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Query: 40 GGEPRLRGCIGTLEARC-LINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFET 98
G LRGCIG +EA L A+ +A D RFPP+ E ++ V++LT +
Sbjct: 66 GNSTSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPRFPPLSKGEFDNIIIEVTVLTKPQE 125
Query: 99 ANNYLDWE------VGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVEAIDSLMRKA 152
+ WE VG GLI+ EY S LP+V W + + KA
Sbjct: 126 IDVENRWELPKKIKVGEDGLIV-----EYGILYSGLLLPQVPXEYCWDEETFLAETCIKA 180
Query: 153 GFSGPITESLRKRIRLTRYQSTLF 176
G L ++++ ++Q +F
Sbjct: 181 GLEPDCW--LNNKVKIKKFQGIIF 202
>pdb|1VAJ|A Chain A, Crystal Structure Of Uncharacterized Protein Ph0010 From
Pyrococcus Horikoshii
Length = 214
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 14/158 (8%)
Query: 30 LFVTWKKVVNGGEPRLRGCIG-TLEARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 88
+FVT + + LRGCIG L+ A+ SA+ D RFPP++ E +L
Sbjct: 47 VFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDDPRFPPVKLEEXDNLVV 106
Query: 89 TVSILTDFETANNYLD-----WEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEGWTKVE 143
VS+LT E + +VG GLI+E S LP+V GW + E
Sbjct: 107 EVSVLTPPELIEGPPEERPRKIKVGRDGLIVE------KGIYSGLLLPQVPVEWGWDEEE 160
Query: 144 AIDSLMRKAGFSGPITESLRKRIRLTRYQSTLFALHYS 181
+ KAG P L + ++ ++ + +F Y
Sbjct: 161 FLAETCWKAGL--PPDCWLDEDTKVYKFTAEIFEEEYP 196
>pdb|1ZQ7|A Chain A, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9.
pdb|1ZQ7|B Chain B, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9.
pdb|1ZQ7|C Chain C, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9.
pdb|1ZQ7|D Chain D, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9
Length = 207
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 27 FSPLFVTWKKV----VNGGEPRLRGCIG-TLEARCLINGFKDYALTSALKDRRFPPIQAR 81
SP+F ++ V GG LRGCIG L D A+++A +D RFP ++
Sbjct: 37 LSPVFEEYRGVFVTLTEGG--LLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVEQD 94
Query: 82 ELPSLECTVSILTDFETANNYLDW-----EVGTHGLIIEFTDPEYSTRRSATYLPEVAAH 136
E ++ V+ILT E N E+G HGLI++ LP+VA
Sbjct: 95 EXKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVK------QGYCQGLLLPQVAPE 148
Query: 137 EGWTKVEAIDSLMRKAGFS 155
++ + KAG S
Sbjct: 149 NDXDSIDFLSHTCXKAGLS 167
>pdb|2E1N|A Chain A, Crystal Structure Of The Cyanobacterium Circadian Clock
Modifier Pex
pdb|2E1N|B Chain B, Crystal Structure Of The Cyanobacterium Circadian Clock
Modifier Pex
Length = 138
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 34 WKKVVNGGEPRLRGCIGTLE---ARCLINGFKDYALTSALKDRRFPPIQAR 81
WKKV G PR + +R L ++ Y +SA DR+ P++AR
Sbjct: 88 WKKVEGRGRPRRMYQLAQANDDRSRDLAQLWERYLSSSAATDRQLIPVEAR 138
>pdb|2ZFW|A Chain A, Crystal Structure Of Pex From Synechococcus Sp. (Strain
Pcc 7942) (Anacystis Nidulans R2)
pdb|2ZFW|B Chain B, Crystal Structure Of Pex From Synechococcus Sp. (Strain
Pcc 7942) (Anacystis Nidulans R2)
pdb|2ZFW|D Chain D, Crystal Structure Of Pex From Synechococcus Sp. (Strain
Pcc 7942) (Anacystis Nidulans R2)
pdb|2ZFW|E Chain E, Crystal Structure Of Pex From Synechococcus Sp. (Strain
Pcc 7942) (Anacystis Nidulans R2)
Length = 148
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 34 WKKVVNGGEPRLRGCIGTLE---ARCLINGFKDYALTSALKDRRFPPIQAR 81
WKKV G PR + +R L ++ Y +SA DR+ P++AR
Sbjct: 98 WKKVEGRGRPRRMYQLAQANDDRSRDLAQLWERYLSSSAATDRQLIPVEAR 148
>pdb|3OH0|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Triphosphate
pdb|3OH1|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galacturonic Acid
pdb|3OH2|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galactose
pdb|3OH3|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate -Arabinose
pdb|3OH4|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate Glucose
Length = 641
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 100 NNYLDWEVGTHGLIIEFTDPEYS--TRRS 126
++Y+D +HG++ EF +P+YS TRRS
Sbjct: 367 SSYVDRLRESHGIVPEFINPKYSDETRRS 395
>pdb|3OGZ|A Chain A, Protein Structure Of Usp From L. Major In Apo-Form
Length = 630
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 100 NNYLDWEVGTHGLIIEFTDPEYS--TRRS 126
++Y+D +HG++ EF +P+YS TRRS
Sbjct: 367 SSYVDRLRESHGIVPEFINPKYSDETRRS 395
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,280,897
Number of Sequences: 62578
Number of extensions: 247013
Number of successful extensions: 579
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 7
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)