BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028677
(205 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225461477|ref|XP_002282453.1| PREDICTED: putative RNA-binding protein ylmH [Vitis vinifera]
gi|302142996|emb|CBI20291.3| unnamed protein product [Vitis vinifera]
Length = 321
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 131/193 (67%), Positives = 154/193 (79%), Gaps = 1/193 (0%)
Query: 1 MAAISLAAPWILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQA 60
MAA P +LR+A+ +F LP L H+N ++ R F T L +ASG+ HL QA
Sbjct: 1 MAATGFTTPSVLRKALHSF-LPLRLTHINNTLFYYKNLRSFPLSTHLNSSASGMCHLAQA 59
Query: 61 VKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD 120
+KG+ + LLKGV D++ IE VKHILEMA+RAS+RREVLH+DFLTPPVLKESM+ LEKLAD
Sbjct: 60 MKGDANSLLKGVADRSTIEAVKHILEMAKRASARREVLHTDFLTPPVLKESMIVLEKLAD 119
Query: 121 VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
+KAVAQGGYPQAERCRLSVGH E LT+ PDIVAAL ITGNFGFQ CSHGDFLG+ILGTGI
Sbjct: 120 MKAVAQGGYPQAERCRLSVGHSEVLTTAPDIVAALRITGNFGFQSCSHGDFLGAILGTGI 179
Query: 181 AREKIGDIILQNK 193
AREK+GDIILQ +
Sbjct: 180 AREKLGDIILQGE 192
>gi|9454543|gb|AAF87866.1|AC022520_10 Unknown protein [Arabidopsis thaliana]
Length = 773
Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats.
Identities = 128/201 (63%), Positives = 153/201 (76%), Gaps = 6/201 (2%)
Query: 1 MAAISLAAPW-ILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQ 59
MA SLA PW ILR A R+ + LH N + P +FP LR +A + +
Sbjct: 453 MAVTSLAPPWVILRLAFRSVA-ASSCLHTNQKTLITNLSIPTSFP--LRQSALRRCYSAE 509
Query: 60 AVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA 119
A+KG+ D LLKGVGD+ +EVK ILEMARRASS+REVLH+DFLTPP++KES+ LEK A
Sbjct: 510 AIKGDVDFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFA 569
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
DVK VAQGGYP+AERCR+S+GHP+ LTSDPDIVAALSITGNFGFQPCSHGDFLG+ILGTG
Sbjct: 570 DVKIVAQGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNFGFQPCSHGDFLGAILGTG 629
Query: 180 IAREKIGDIILQ--NKGFLCS 198
I+REK+GDI++Q N G CS
Sbjct: 630 ISREKLGDILIQVGNVGVTCS 650
>gi|297847696|ref|XP_002891729.1| hypothetical protein ARALYDRAFT_314636 [Arabidopsis lyrata subsp.
lyrata]
gi|297337571|gb|EFH67988.1| hypothetical protein ARALYDRAFT_314636 [Arabidopsis lyrata subsp.
lyrata]
Length = 759
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 122/200 (61%), Positives = 151/200 (75%), Gaps = 4/200 (2%)
Query: 1 MAAISLAAPWILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQA 60
MA SLA PWI+ R LH N + P +FP LRH+A ++ +A
Sbjct: 439 MAVTSLAPPWIILRQTFRSVAASSYLHSNHKTLISNLSIPASFP--LRHSALRRCYIAEA 496
Query: 61 VKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD 120
+KG+ D LLKGVGD+ +EVK ILEMARRA+S+REVLH+DFLTPP++KES++ L K AD
Sbjct: 497 IKGDVDFLLKGVGDQAVAKEVKQILEMARRAASKREVLHTDFLTPPIVKESVLVLGKFAD 556
Query: 121 VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
VK VAQGGYP+AERCR+S+GHP+ LT+DPDIVAALSITGNFGFQPCSHGDFLG+ILGTGI
Sbjct: 557 VKIVAQGGYPEAERCRISIGHPDVLTNDPDIVAALSITGNFGFQPCSHGDFLGAILGTGI 616
Query: 181 AREKIGDIILQ--NKGFLCS 198
+REK+GDI++Q N G C+
Sbjct: 617 SREKLGDILIQVGNVGVTCT 636
>gi|359807576|ref|NP_001241156.1| uncharacterized protein LOC100793767 [Glycine max]
gi|255642537|gb|ACU21532.1| unknown [Glycine max]
Length = 324
Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 125/198 (63%), Positives = 149/198 (75%), Gaps = 10/198 (5%)
Query: 1 MAAISLAAPWILRRAVRTFSLPQPLLHLNPGSCFHGTHRPF-----TFPTSLRHTASGIR 55
+ A S W LRRA + F++ H+ + R F + TSL ASG+
Sbjct: 3 VTASSFGTTWCLRRAAQAFAISHS--HILRNNVKLSLQRNFCSHLLSVSTSL---ASGVS 57
Query: 56 HLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMAL 115
+QA+KG D LLKGVG+++ +EVKHILEMARRAS +RE+LH+DFLTPPVLKESM L
Sbjct: 58 QTVQALKGEVDLLLKGVGERSVTKEVKHILEMARRASLKREILHTDFLTPPVLKESMQVL 117
Query: 116 EKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSI 175
EKLADVKA+AQGGYPQAERCR+SVGHPE LTSDPDI++ALSITGNF F+PCSHGDFLGSI
Sbjct: 118 EKLADVKAIAQGGYPQAERCRISVGHPEELTSDPDIISALSITGNFQFEPCSHGDFLGSI 177
Query: 176 LGTGIAREKIGDIILQNK 193
LGTGI REK+GDIILQ +
Sbjct: 178 LGTGIVREKLGDIILQGE 195
>gi|18404337|ref|NP_564622.1| RNA-binding S4 domain-containing protein [Arabidopsis thaliana]
gi|16648939|gb|AAL24321.1| Unknown protein [Arabidopsis thaliana]
gi|24899783|gb|AAN65106.1| Unknown protein [Arabidopsis thaliana]
gi|27311617|gb|AAO00774.1| Unknown protein [Arabidopsis thaliana]
gi|30984534|gb|AAP42730.1| At1g53120 [Arabidopsis thaliana]
gi|332194772|gb|AEE32893.1| RNA-binding S4 domain-containing protein [Arabidopsis thaliana]
Length = 320
Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/194 (63%), Positives = 150/194 (77%), Gaps = 4/194 (2%)
Query: 1 MAAISLAAPW-ILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQ 59
MA SLA PW ILR A R+ + LH N + P +FP LR +A + +
Sbjct: 1 MAVTSLAPPWVILRLAFRSVA-ASSCLHTNQKTLITNLSIPTSFP--LRQSALRRCYSAE 57
Query: 60 AVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA 119
A+KG+ D LLKGVGD+ +EVK ILEMARRASS+REVLH+DFLTPP++KES+ LEK A
Sbjct: 58 AIKGDVDFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFA 117
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
DVK VAQGGYP+AERCR+S+GHP+ LTSDPDIVAALSITGNFGFQPCSHGDFLG+ILGTG
Sbjct: 118 DVKIVAQGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNFGFQPCSHGDFLGAILGTG 177
Query: 180 IAREKIGDIILQNK 193
I+REK+GDI++Q +
Sbjct: 178 ISREKLGDILIQEE 191
>gi|449457021|ref|XP_004146247.1| PREDICTED: putative RNA-binding protein YlmH-like [Cucumis sativus]
gi|449495519|ref|XP_004159865.1| PREDICTED: putative RNA-binding protein YlmH-like [Cucumis sativus]
Length = 319
Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 127/192 (66%), Positives = 153/192 (79%), Gaps = 7/192 (3%)
Query: 3 AISLAAPWILRRAVRTFSLPQPL-LHLNPGSCFHGTHRPFTFPTSLRHTASGIRHLIQAV 61
A S+AA W LRRA + S +PL L+LN CF+ FP+S T SGI L+QAV
Sbjct: 5 ATSIAALWSLRRAAQFSSFRRPLALNLNR-LCFNEAR----FPSSPLGT-SGICQLVQAV 58
Query: 62 KGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADV 121
KG+ D LL GVGDK I +VK IL MA+R+ SRREVLH++FLTPPV+KESM+A++KLADV
Sbjct: 59 KGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADV 118
Query: 122 KAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 181
KA+AQGGYP+AERCR+SVGH + LTSDPDI++ALSITGNF F PCSHGDFLGSILGTGIA
Sbjct: 119 KAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIA 178
Query: 182 REKIGDIILQNK 193
REK+GDI+LQ +
Sbjct: 179 REKLGDIMLQEE 190
>gi|255586534|ref|XP_002533905.1| RNA binding protein, putative [Ricinus communis]
gi|223526138|gb|EEF28479.1| RNA binding protein, putative [Ricinus communis]
Length = 231
Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 114/143 (79%), Positives = 127/143 (88%)
Query: 51 ASGIRHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKE 110
A GI L QA+K DLLK VGDK+ +EEVKHIL+MARRASSRRE LH+DFLTPP+LKE
Sbjct: 13 ALGICQLAQAMKSEVSDLLKSVGDKSVVEEVKHILDMARRASSRREALHTDFLTPPILKE 72
Query: 111 SMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGD 170
SM+ LEKLAD+KAV QGGYPQAERCRLSVGHPEAL +DPDI+AALSITGNF FQPCSHGD
Sbjct: 73 SMLLLEKLADIKAVGQGGYPQAERCRLSVGHPEALMNDPDIIAALSITGNFAFQPCSHGD 132
Query: 171 FLGSILGTGIAREKIGDIILQNK 193
FLGSILGTGI+REK+GDIILQ +
Sbjct: 133 FLGSILGTGISREKVGDIILQGE 155
>gi|147798253|emb|CAN67613.1| hypothetical protein VITISV_010260 [Vitis vinifera]
Length = 269
Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 111/138 (80%), Positives = 125/138 (90%)
Query: 56 HLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMAL 115
HL QA+KG+ + LLKGV D++ IE VKHILEMA+RAS+RREVLH+DFLTPPVLKESM+ L
Sbjct: 3 HLAQAMKGDANSLLKGVADRSTIEAVKHILEMAKRASARREVLHTDFLTPPVLKESMIVL 62
Query: 116 EKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSI 175
EKLAD+KAVAQGGYPQAERCRLSVGH E LT+ PDIVAAL ITGNFGFQ CSHGDFLG+I
Sbjct: 63 EKLADMKAVAQGGYPQAERCRLSVGHSEVLTTAPDIVAALRITGNFGFQSCSHGDFLGAI 122
Query: 176 LGTGIAREKIGDIILQNK 193
LGTGIAREK+GDIILQ +
Sbjct: 123 LGTGIAREKLGDIILQGE 140
>gi|357452969|ref|XP_003596761.1| hypothetical protein MTR_2g085340 [Medicago truncatula]
gi|355485809|gb|AES67012.1| hypothetical protein MTR_2g085340 [Medicago truncatula]
Length = 325
Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 121/199 (60%), Positives = 144/199 (72%), Gaps = 9/199 (4%)
Query: 1 MAAI--SLAAPWILRRAVRTFSLPQPLLHLNPGSCFHG----THRPFTFPTSLRHTASGI 54
MAA S W LRR + F+L G+ T +F TS + SG
Sbjct: 1 MAATTTSFGTAWCLRRVTQAFALSHSHTLRTNGNNLSFQRTLTSHLLSFSTS---SDSGA 57
Query: 55 RHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMA 114
+QA K D LLKGVG+K+ EVKH+LEMARRAS +RE+LH++FLTPPVLKESM
Sbjct: 58 STTVQASKREVDVLLKGVGEKSVENEVKHVLEMARRASLKREILHTNFLTPPVLKESMQV 117
Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGS 174
LEKLAD+KA+AQGGYPQAERCR+SVGHP+ LTSDPD+++ALSITGNF F+PCSHGDFLGS
Sbjct: 118 LEKLADIKALAQGGYPQAERCRISVGHPDELTSDPDVISALSITGNFQFEPCSHGDFLGS 177
Query: 175 ILGTGIAREKIGDIILQNK 193
ILGTGIAREK+GDIILQ +
Sbjct: 178 ILGTGIAREKVGDIILQGE 196
>gi|217074322|gb|ACJ85521.1| unknown [Medicago truncatula]
Length = 325
Score = 235 bits (600), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 121/199 (60%), Positives = 144/199 (72%), Gaps = 9/199 (4%)
Query: 1 MAAI--SLAAPWILRRAVRTFSLPQPLLHLNPGSCFHG----THRPFTFPTSLRHTASGI 54
MAA S W LRR + F+L G+ T +F TS + SG
Sbjct: 1 MAATTTSFGTAWCLRRVTQAFALSHSHTLRTNGNNLSFQRTLTSHLLSFSTS---SDSGA 57
Query: 55 RHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMA 114
+QA K D LLKGVG+K+ EVKH+LEMARRAS +RE+LH++FLTPPVLKESM
Sbjct: 58 STTVQASKREVDVLLKGVGEKSVENEVKHVLEMARRASLKREILHTNFLTPPVLKESMRV 117
Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGS 174
LEKLAD+KA+AQGGYPQAERCR+SVGHP+ LTSDPD+++ALSITGNF F+PCSHGDFLGS
Sbjct: 118 LEKLADIKALAQGGYPQAERCRISVGHPDELTSDPDVISALSITGNFQFEPCSHGDFLGS 177
Query: 175 ILGTGIAREKIGDIILQNK 193
ILGTGIAREK+GDIILQ +
Sbjct: 178 ILGTGIAREKVGDIILQGE 196
>gi|388517071|gb|AFK46597.1| unknown [Medicago truncatula]
Length = 222
Score = 235 bits (600), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 121/199 (60%), Positives = 144/199 (72%), Gaps = 9/199 (4%)
Query: 1 MAAI--SLAAPWILRRAVRTFSLPQPLLHLNPGSCFHG----THRPFTFPTSLRHTASGI 54
MAA S W LRR + F+L G+ T +F TS + SG
Sbjct: 1 MAATTTSFGTAWCLRRVTQAFALSHSHTLRTNGNNLSFQRTLTSHLLSFSTS---SDSGA 57
Query: 55 RHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMA 114
+QA K D LLKGVG+K+ EVKH+LEMARRAS +RE+LH++FLTPPVLKESM
Sbjct: 58 STTVQASKREVDVLLKGVGEKSVENEVKHVLEMARRASLKREILHTNFLTPPVLKESMRV 117
Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGS 174
LEKLAD+KA+AQGGYPQAERCR+SVGHP+ LTSDPD+++ALSITGNF F+PCSHGDFLGS
Sbjct: 118 LEKLADIKALAQGGYPQAERCRISVGHPDELTSDPDVISALSITGNFQFEPCSHGDFLGS 177
Query: 175 ILGTGIAREKIGDIILQNK 193
ILGTGIAREK+GDIILQ +
Sbjct: 178 ILGTGIAREKVGDIILQGE 196
>gi|224114944|ref|XP_002316899.1| predicted protein [Populus trichocarpa]
gi|222859964|gb|EEE97511.1| predicted protein [Populus trichocarpa]
Length = 268
Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/135 (80%), Positives = 118/135 (87%), Gaps = 1/135 (0%)
Query: 56 HLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMAL 115
H+ QA KG LKGV DK+ IEEVK IL+MARRAS RREVLH+DFLTPP LKES+ L
Sbjct: 3 HVAQATKGEVV-ALKGVEDKSVIEEVKRILDMARRASLRREVLHTDFLTPPTLKESLHVL 61
Query: 116 EKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSI 175
EKLADVKA+AQGGYPQAERCRLSVGHPE LTSDPDIVAALSITGNFGFQ CSHGDFLG+I
Sbjct: 62 EKLADVKAIAQGGYPQAERCRLSVGHPETLTSDPDIVAALSITGNFGFQLCSHGDFLGAI 121
Query: 176 LGTGIAREKIGDIIL 190
LGTGIAR K+GDII+
Sbjct: 122 LGTGIARNKLGDIIV 136
>gi|242054411|ref|XP_002456351.1| hypothetical protein SORBIDRAFT_03g034470 [Sorghum bicolor]
gi|241928326|gb|EES01471.1| hypothetical protein SORBIDRAFT_03g034470 [Sorghum bicolor]
Length = 304
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 91/134 (67%), Positives = 118/134 (88%)
Query: 60 AVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA 119
AV D +KG D+N+ EEV++IL+MA+RAS RR+V H++FLTPP++KE+M+A+EKLA
Sbjct: 42 AVAAARDSAVKGSVDRNSAEEVRNILDMAQRASQRRDVFHTNFLTPPIVKEAMLAVEKLA 101
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
D+KAVAQGGYPQAERCR+SVGHP+ +TS+PD+VAALSI+GNF +PCSHGDFLG+ILGTG
Sbjct: 102 DIKAVAQGGYPQAERCRISVGHPDFMTSNPDVVAALSISGNFRLEPCSHGDFLGAILGTG 161
Query: 180 IAREKIGDIILQNK 193
I REK+GDI+LQ +
Sbjct: 162 ITREKVGDILLQGE 175
>gi|195639066|gb|ACG39001.1| RNA-binding S4 [Zea mays]
Length = 304
Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/134 (67%), Positives = 113/134 (84%)
Query: 60 AVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA 119
AV D +KG D+N+ EEV++IL MA RAS RR+V H++FLTPP++KE+M+ALEK A
Sbjct: 42 AVAAARDSAVKGSVDRNSAEEVRNILNMAERASQRRDVFHTNFLTPPIVKETMLALEKFA 101
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
D KAVAQGGYPQAERCR+SVGHP+ +TS+PD+VAALSI+GNF + CSHGDFLG+ILGTG
Sbjct: 102 DTKAVAQGGYPQAERCRISVGHPDVMTSNPDVVAALSISGNFRLESCSHGDFLGAILGTG 161
Query: 180 IAREKIGDIILQNK 193
I REK+GDI+LQ +
Sbjct: 162 ITREKVGDILLQGE 175
>gi|218189042|gb|EEC71469.1| hypothetical protein OsI_03722 [Oryza sativa Indica Group]
Length = 305
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/197 (53%), Positives = 135/197 (68%), Gaps = 28/197 (14%)
Query: 2 AAISLAAPWILRRAVRTFSLPQPLLHLNPGSCFHGTHRPFT---FPTSLRHTASGIRHLI 58
AA+SLA+P LRR + H PF PTS SG H
Sbjct: 3 AAVSLASP--LRRVL---------------------HVPFARRAIPTSYHFIPSGRCHAA 39
Query: 59 QAVKGNF--DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALE 116
+ D +K D+NA EE++ IL+MA+RAS RR+V H++FLTPP++KE M+A+E
Sbjct: 40 LSFAAAAAGDSAVKASLDRNAAEELRSILDMAQRASQRRDVFHTNFLTPPIVKECMLAIE 99
Query: 117 KLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSIL 176
KLAD+KAVAQGGYPQAERCR+SVGHP+ +TS+PD+VAALSI+GNF +PCSHGDFLG+IL
Sbjct: 100 KLADIKAVAQGGYPQAERCRVSVGHPDCMTSNPDVVAALSISGNFRLEPCSHGDFLGAIL 159
Query: 177 GTGIAREKIGDIILQNK 193
GTGI R+K+GDI+LQ +
Sbjct: 160 GTGITRDKVGDILLQGE 176
>gi|297597609|ref|NP_001044235.2| Os01g0747700 [Oryza sativa Japonica Group]
gi|57899502|dbj|BAD86964.1| S4 domain protein-like [Oryza sativa Japonica Group]
gi|255673682|dbj|BAF06149.2| Os01g0747700 [Oryza sativa Japonica Group]
Length = 305
Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 96/161 (59%), Positives = 123/161 (76%), Gaps = 5/161 (3%)
Query: 38 HRPFT---FPTSLRHTASGIRHLIQAVKGNF--DDLLKGVGDKNAIEEVKHILEMARRAS 92
H PF PTS SG H + D +K D+NA EE++ IL+MA+RAS
Sbjct: 16 HVPFARRAIPTSYHFFPSGRCHAALSFAAAAAGDSAVKASLDRNAAEELRSILDMAQRAS 75
Query: 93 SRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 152
RR+V H++FLTPP++KE M+A+EKLAD+KAVAQGGYPQAERCR+SVGHP+ +TS+PD+V
Sbjct: 76 QRRDVFHTNFLTPPIVKECMLAIEKLADIKAVAQGGYPQAERCRVSVGHPDCMTSNPDVV 135
Query: 153 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
AALSI+GNF +PCSHGDFLG+ILGTGI R+K+GDI+LQ +
Sbjct: 136 AALSISGNFRLEPCSHGDFLGAILGTGITRDKVGDILLQGE 176
>gi|212274707|ref|NP_001130102.1| uncharacterized protein LOC100191195 [Zea mays]
gi|194688290|gb|ACF78229.1| unknown [Zea mays]
gi|223975061|gb|ACN31718.1| unknown [Zea mays]
gi|414880496|tpg|DAA57627.1| TPA: RNA-binding S4 isoform 1 [Zea mays]
gi|414880497|tpg|DAA57628.1| TPA: RNA-binding S4 isoform 2 [Zea mays]
gi|414880498|tpg|DAA57629.1| TPA: RNA-binding S4 isoform 3 [Zea mays]
Length = 304
Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 90/134 (67%), Positives = 112/134 (83%)
Query: 60 AVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA 119
AV D +KG D+N+ EEV++IL MA RAS RR V H++FLTPP++KE+M+ALEK A
Sbjct: 42 AVAAARDLAVKGSVDRNSAEEVRNILNMAERASQRRNVFHTNFLTPPIVKEAMLALEKFA 101
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
D KAVAQGGYPQAERCR+SVGHP+ +TS+PD+VAALSI+GNF + CSHGDFLG+ILGTG
Sbjct: 102 DTKAVAQGGYPQAERCRISVGHPDVMTSNPDVVAALSISGNFRLESCSHGDFLGAILGTG 161
Query: 180 IAREKIGDIILQNK 193
I REK+GDI+LQ +
Sbjct: 162 ITREKVGDILLQGE 175
>gi|222619243|gb|EEE55375.1| hypothetical protein OsJ_03443 [Oryza sativa Japonica Group]
Length = 290
Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 96/161 (59%), Positives = 123/161 (76%), Gaps = 5/161 (3%)
Query: 38 HRPFT---FPTSLRHTASGIRHLIQAVKGNF--DDLLKGVGDKNAIEEVKHILEMARRAS 92
H PF PTS SG H + D +K D+NA EE++ IL+MA+RAS
Sbjct: 16 HVPFARRAIPTSYHFFPSGRCHAALSFAAAAAGDSAVKASLDRNAAEELRSILDMAQRAS 75
Query: 93 SRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 152
RR+V H++FLTPP++KE M+A+EKLAD+KAVAQGGYPQAERCR+SVGHP+ +TS+PD+V
Sbjct: 76 QRRDVFHTNFLTPPIVKECMLAIEKLADIKAVAQGGYPQAERCRVSVGHPDCMTSNPDVV 135
Query: 153 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
AALSI+GNF +PCSHGDFLG+ILGTGI R+K+GDI+LQ +
Sbjct: 136 AALSISGNFRLEPCSHGDFLGAILGTGITRDKVGDILLQGE 176
>gi|326523405|dbj|BAJ88743.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 305
Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 108/128 (84%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
D KG ++ EEV IL+MA+RAS RR+V H+ FLTPP++ E+M+A+EKLAD+KA+A
Sbjct: 49 DSSAKGSVHRHVTEEVMGILDMAQRASQRRDVFHTSFLTPPIITEAMLAIEKLADIKAIA 108
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
QGGYPQAERCR+SVGHP+++ +DPD+VAALSI+GNF +PCSHGDFLG+ILG GI R+K+
Sbjct: 109 QGGYPQAERCRISVGHPDSMRNDPDVVAALSISGNFRLEPCSHGDFLGAILGAGITRDKV 168
Query: 186 GDIILQNK 193
GDI+LQ +
Sbjct: 169 GDILLQGE 176
>gi|357136417|ref|XP_003569801.1| PREDICTED: putative RNA-binding protein ylmH-like [Brachypodium
distachyon]
Length = 222
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/110 (70%), Positives = 98/110 (89%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
IL+MA AS RR+V H+ FLTPPV+KE+M+A+EKLA +KAVAQGGYPQAERCR+SVGHP+
Sbjct: 3 ILDMAETASQRRDVFHTSFLTPPVIKEAMLAIEKLAGIKAVAQGGYPQAERCRISVGHPD 62
Query: 144 ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
++ S+PD+VAALSI+GNF +PCSHGDFLG+ILG GI REK+GDI+LQ +
Sbjct: 63 SMKSNPDVVAALSISGNFRLEPCSHGDFLGAILGAGITREKVGDILLQEE 112
>gi|116784861|gb|ABK23497.1| unknown [Picea sitchensis]
Length = 332
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/133 (57%), Positives = 105/133 (78%)
Query: 61 VKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD 120
+K +D LKG+ +A VK IL A++A+S RE+ HSDFL PPV+++++ A++KL+D
Sbjct: 71 LKYEKEDHLKGLSKGSAESPVKLILVQAQKAASGREIFHSDFLMPPVVEDALSAIKKLSD 130
Query: 121 VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
V+A+ QGGYPQAERCRLS+GH + ++S PD V+ALSI+GNF F P SHGDFLG++L TGI
Sbjct: 131 VEALVQGGYPQAERCRLSIGHTDVISSAPDAVSALSISGNFTFDPASHGDFLGAVLATGI 190
Query: 181 AREKIGDIILQNK 193
REK+GDI+LQ +
Sbjct: 191 RREKVGDILLQGE 203
>gi|168015016|ref|XP_001760047.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688797|gb|EDQ75172.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 276
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 101/156 (64%), Gaps = 22/156 (14%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
LL GV DK +++V ILE AR A+ R EV HS FLTPPVL +++ A+ +L+DV + G
Sbjct: 14 LLLGV-DKAHVDDVARILEQARTAADRWEVAHSAFLTPPVLNDALTAVRRLSDVGVLVSG 72
Query: 128 GYPQAERCRLSVGHPEALTSD---------PDIVAALSITGNFGFQPCSHGDFLGSILGT 178
GY QAERCRLSVGH E + + P VAALS++GNF F+ +HGDFLGSILGT
Sbjct: 73 GYAQAERCRLSVGHVETIEAGSLEGGNAGYPGAVAALSVSGNFMFESATHGDFLGSILGT 132
Query: 179 GIAREKIGDIILQ-NKG-----------FLCSGCLQ 202
G+ R+K+GDII+Q KG F CS +Q
Sbjct: 133 GVTRDKVGDIIMQGEKGAQILVVPELVEFFCSSLVQ 168
>gi|307106329|gb|EFN54575.1| hypothetical protein CHLNCDRAFT_35967 [Chlorella variabilis]
Length = 332
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/134 (54%), Positives = 95/134 (70%), Gaps = 7/134 (5%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
DDLL+GV D E V ++E+A+RA+ VLHSDF TPPV+ +++M L+++ADV VA
Sbjct: 71 DDLLRGV-DAEHRESVARVVELAQRAADSWAVLHSDFHTPPVVADALMVLQRMADVAGVA 129
Query: 126 QGGYPQAERCRLSVGHPEA---LTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTG 179
GGYPQAERCRL+VG EA L DP VAA+ +TGNF F P SH DFLG+ LGTG
Sbjct: 130 WGGYPQAERCRLAVGREEAVEGLAGDPSQLGGVAAVEVTGNFMFDPASHRDFLGACLGTG 189
Query: 180 IAREKIGDIILQNK 193
I R K+GDI+++ +
Sbjct: 190 IERGKVGDIVVRGE 203
>gi|302832532|ref|XP_002947830.1| hypothetical protein VOLCADRAFT_57892 [Volvox carteri f.
nagariensis]
gi|300266632|gb|EFJ50818.1| hypothetical protein VOLCADRAFT_57892 [Volvox carteri f.
nagariensis]
Length = 300
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 89/144 (61%), Gaps = 6/144 (4%)
Query: 57 LIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALE 116
L A+KG D D +V +LE+A RA+ R +V+ +DFL PP++ +SM AL
Sbjct: 29 LASALKGQGTDTALAWVDPANRRDVARVLEIAERAAQRWDVVWTDFLPPPIVADSMAALA 88
Query: 117 KLADVKAVAQGGYPQAERCRLSVGHP---EALTSDP---DIVAALSITGNFGFQPCSHGD 170
D+ + GGY QAERCR+++G E L SDP D VAAL + GNF F P H D
Sbjct: 89 SRTDIVCLPWGGYAQAERCRIALGREELMEPLQSDPQQLDGVAALQVKGNFMFDPAKHPD 148
Query: 171 FLGSILGTGIAREKIGDIILQNKG 194
FLG+ILGTG+ R+K+GDI++Q +
Sbjct: 149 FLGAILGTGVVRDKVGDILVQGEA 172
>gi|159465535|ref|XP_001690978.1| hypothetical protein CHLREDRAFT_128015 [Chlamydomonas reinhardtii]
gi|158279664|gb|EDP05424.1| predicted protein [Chlamydomonas reinhardtii]
Length = 291
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 84/121 (69%), Gaps = 7/121 (5%)
Query: 80 EVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV 139
EV +LE+A RA+ R +V+ +DFLTPP++ +SM AL+ DV V GGY QAERCRL++
Sbjct: 42 EVARVLEIAERATDRWDVVWTDFLTPPIVADSMAALQGRQDVICVPWGGYAQAERCRLAL 101
Query: 140 GHP---EALTSDP---DIVAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQN 192
G E+L SDP D V AL + GNF F P H DFLG+ILGT G+ REK+GDI++Q
Sbjct: 102 GREELMESLRSDPQQLDGVVALQVKGNFMFDPAKHPDFLGAILGTAGVVREKVGDILVQG 161
Query: 193 K 193
+
Sbjct: 162 E 162
>gi|302767986|ref|XP_002967413.1| hypothetical protein SELMODRAFT_86884 [Selaginella moellendorffii]
gi|300165404|gb|EFJ32012.1| hypothetical protein SELMODRAFT_86884 [Selaginella moellendorffii]
Length = 245
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 77/110 (70%), Gaps = 7/110 (6%)
Query: 88 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 147
A RA R+EVLH+DFLTPP L+ES+ + KLADV V GGY QAERCRLS+G + + +
Sbjct: 2 ADRAVERQEVLHTDFLTPPALQESLACVRKLADVGVVVSGGYAQAERCRLSLGPADLIRA 61
Query: 148 D-------PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
P V+ALS++G F +HGDFLG++LGTGI REK+GDII+
Sbjct: 62 SQCSAGGYPGAVSALSVSGKFVHDAANHGDFLGAVLGTGIVREKVGDIIV 111
>gi|302753752|ref|XP_002960300.1| hypothetical protein SELMODRAFT_73367 [Selaginella moellendorffii]
gi|300171239|gb|EFJ37839.1| hypothetical protein SELMODRAFT_73367 [Selaginella moellendorffii]
Length = 245
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 77/110 (70%), Gaps = 7/110 (6%)
Query: 88 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 147
A RA R+EVLH+DFLTPP L+ES+ + KLADV V GGY QAERCRLS+G + + +
Sbjct: 2 ADRAVERQEVLHTDFLTPPALQESLACVRKLADVGVVVSGGYAQAERCRLSLGPADLIRA 61
Query: 148 D-------PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
P V+ALS++G F +HGDFLG++LGTGI REK+GDII+
Sbjct: 62 SQCSAGGYPGAVSALSVSGKFVHDAANHGDFLGAVLGTGIVREKVGDIIV 111
>gi|67923764|ref|ZP_00517228.1| RNA-binding S4 [Crocosphaera watsonii WH 8501]
gi|67854391|gb|EAM49686.1| RNA-binding S4 [Crocosphaera watsonii WH 8501]
Length = 275
Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 79/126 (62%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+ LLKGV ++ E+ I++ A A EV+ SDF +PPV+ E +L D++ V
Sbjct: 21 ETLLKGVENRT---EITRIVDQAEIAVKTWEVVVSDFFSPPVIAEVENGFSRLTDIEIVV 77
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+ + PE P I +AAL I GNF F P SH DFLG+IL TGI REK
Sbjct: 78 WGGYPQAERRRIGIARPEIPLEQPQIPLAALDIAGNFLFDPASHRDFLGAILATGIVREK 137
Query: 185 IGDIIL 190
IGDII+
Sbjct: 138 IGDIIV 143
>gi|416399374|ref|ZP_11686955.1| RNA-binding S4 [Crocosphaera watsonii WH 0003]
gi|357262400|gb|EHJ11533.1| RNA-binding S4 [Crocosphaera watsonii WH 0003]
Length = 259
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 79/126 (62%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+ LLKGV ++ E+ I++ A A EV+ SDF +PPV+ E +L D++ V
Sbjct: 5 ETLLKGVENRT---EITRIVDQAEIAVKTWEVVVSDFFSPPVIAEVENGFSRLTDIEIVV 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+ + PE P I +AAL I GNF F P SH DFLG+IL TGI REK
Sbjct: 62 WGGYPQAERRRIGIARPEIPLEQPQIPLAALDIAGNFLFDPASHRDFLGAILATGIVREK 121
Query: 185 IGDIIL 190
IGDII+
Sbjct: 122 IGDIIV 127
>gi|428205885|ref|YP_007090238.1| photosystem II S4 domain-containing protein [Chroococcidiopsis
thermalis PCC 7203]
gi|428007806|gb|AFY86369.1| photosystem II S4 domain protein [Chroococcidiopsis thermalis PCC
7203]
Length = 259
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 83/126 (65%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+DLLKGV ++ AI ++++A +A EV+ +DFL+PP L ES +L DV+ VA
Sbjct: 5 EDLLKGVENREAI---VRVIDLAEQAIKTWEVVLTDFLSPPELAESQQIFSRLTDVQLVA 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ E L S VAA+ I GNF F +H DFLG++LGTGI R+K
Sbjct: 62 WGGYPQAERQRLAIARAEVPLDSSQVTVAAIDIAGNFLFDTATHRDFLGAMLGTGIVRDK 121
Query: 185 IGDIIL 190
GDII+
Sbjct: 122 TGDIIV 127
>gi|443328134|ref|ZP_21056736.1| photosystem II S4 domain protein [Xenococcus sp. PCC 7305]
gi|442792216|gb|ELS01701.1| photosystem II S4 domain protein [Xenococcus sp. PCC 7305]
Length = 259
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 83/126 (65%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+DLLKGV ++ EEV +++ A +A E++ +DFL+PPVL E KL D++ +A
Sbjct: 5 EDLLKGVENR---EEVARVIDKAEQAVRTWEIVLTDFLSPPVLFEVQRIFGKLTDIELLA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + E + I +AAL I GNF F +H DFLGSILGTGI REK
Sbjct: 62 WGGYPQAERQRLGLARLEMPLDNSHIELAALDIAGNFLFDTATHRDFLGSILGTGIVREK 121
Query: 185 IGDIIL 190
+GDII+
Sbjct: 122 VGDIIV 127
>gi|434391054|ref|YP_007126001.1| photosystem II S4 domain protein [Gloeocapsa sp. PCC 7428]
gi|428262895|gb|AFZ28841.1| photosystem II S4 domain protein [Gloeocapsa sp. PCC 7428]
Length = 259
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 85/126 (67%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++++I +++ A++A EV+ +DFL+PP L E+ +L +V+ +A
Sbjct: 5 EELLKGVENRDSI---ARVIDQAQQAIKTWEVVLTDFLSPPELAETQQVFSRLTEVQTIA 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ PE L VAAL I+GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLAIARPEIPLDLSHVAVAALDISGNFLFDTATHRDFLGAMLGTGIVREK 121
Query: 185 IGDIIL 190
GDII+
Sbjct: 122 TGDIIV 127
>gi|254416092|ref|ZP_05029847.1| photosystem II S4 domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196177025|gb|EDX72034.1| photosystem II S4 domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 259
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 81/126 (64%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+DLLKGV +++ V +++ A +A EV+ +DFL+PPVL E +L +V+ +
Sbjct: 5 EDLLKGVENRDT---VARVIDQAEQAIKTWEVVLTDFLSPPVLVEIQQQFARLTEVQLLP 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + E + VAAL I GNF F P +H DFLG+ILGTGI REK
Sbjct: 62 WGGYPQAERQRLGITREELPLDQSQVEVAALDIEGNFLFDPATHRDFLGAILGTGIVREK 121
Query: 185 IGDIIL 190
+GDII+
Sbjct: 122 VGDIIV 127
>gi|384249277|gb|EIE22759.1| photosystem II S4 domain protein [Coccomyxa subellipsoidea C-169]
Length = 298
Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 90/137 (65%), Gaps = 13/137 (9%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
DDLLKGV ++ ++V ++E A+RA+S + +DF PPV+ ++M A+++LA V A++
Sbjct: 32 DDLLKGVNPQHR-DDVARVVEQAQRAASMWTTICTDFHPPPVVADAMNAMKQLAGVAALS 90
Query: 126 QGGYPQAERCRLSVGHP---EALTSDP---------DIVAALSITGNFGFQPCSHGDFLG 173
GGY QAER R+ +G EAL +DP + VAAL + GNF F +H DFLG
Sbjct: 91 FGGYAQAERTRIFLGQEDIIEALKADPQQVSCKAQAEGVAALRVQGNFMFDAATHRDFLG 150
Query: 174 SILGTGIAREKIGDIIL 190
+ILGTGI R K+GDIIL
Sbjct: 151 AILGTGIERSKVGDIIL 167
>gi|218247630|ref|YP_002373001.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
8801]
gi|257061035|ref|YP_003138923.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
8802]
gi|218168108|gb|ACK66845.1| photosystem II S4 domain protein [Cyanothece sp. PCC 8801]
gi|256591201|gb|ACV02088.1| photosystem II S4 domain protein [Cyanothece sp. PCC 8802]
Length = 259
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 81/126 (64%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+ LLKG+ ++ EE+ I+++A A EV SDFL+PPV+ E + L +++ +
Sbjct: 5 EQLLKGIENR---EEIARIIDLAEIALKTWEVAISDFLSPPVIAEVQRLFKGLTELEMLP 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+ + E P I +AAL I GNF F P +H DFLG+ILGTGI REK
Sbjct: 62 WGGYPQAERQRVGIVRAEIPLETPQITLAALDIAGNFLFDPATHRDFLGAILGTGIVREK 121
Query: 185 IGDIIL 190
IGDII+
Sbjct: 122 IGDIIV 127
>gi|126654802|ref|ZP_01726336.1| RNA-binding S4 [Cyanothece sp. CCY0110]
gi|126623537|gb|EAZ94241.1| RNA-binding S4 [Cyanothece sp. CCY0110]
Length = 259
Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+ LLKG+ ++ EE+ I++ A A EV+ SDF +PPV+ E A +L +V+ +
Sbjct: 5 ETLLKGIENR---EEMTRIIDQAEMAIKTWEVVVSDFFSPPVVAEVENAFSQLTEVEIMV 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+ + PE I +AAL I GNF F P SH DFLG+IL TGI R+K
Sbjct: 62 WGGYPQAERRRIGITRPEIPLEQSQIPLAALDIAGNFLFDPASHRDFLGAILATGIVRDK 121
Query: 185 IGDIIL 190
IGDII+
Sbjct: 122 IGDIIV 127
>gi|428215265|ref|YP_007088409.1| photosystem II S4 domain-containing protein [Oscillatoria acuminata
PCC 6304]
gi|428003646|gb|AFY84489.1| photosystem II S4 domain protein [Oscillatoria acuminata PCC 6304]
Length = 259
Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 84/128 (65%), Gaps = 8/128 (6%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ E++ IL++A RA EV +DFL+P L E+ A +L +V VA
Sbjct: 5 EELLKGVENR---EQMARILDLADRALKTWEVAVTDFLSPIELMETQTAFNRLTEVHLVA 61
Query: 126 QGGYPQAERCRLSVGH---PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGYPQAER R+++ P TS P +AAL I GNF F SH DFLGSILGTGI R
Sbjct: 62 FGGYPQAERQRVAIARIDLPLDATSVP--LAALEIAGNFLFDSASHRDFLGSILGTGIVR 119
Query: 183 EKIGDIIL 190
EK+GDII+
Sbjct: 120 EKVGDIIV 127
>gi|425469652|ref|ZP_18848571.1| RNA-binding S4 [Microcystis aeruginosa PCC 9701]
gi|389880482|emb|CCI38776.1| RNA-binding S4 [Microcystis aeruginosa PCC 9701]
Length = 259
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 89/150 (59%), Gaps = 16/150 (10%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQK 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + ++ DI ++AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLGIARVDLPLAETDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDII-LQNKG-----------FLCSGCLQ 202
+GDII L +G FLC+ LQ
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLCANLLQ 151
>gi|428310855|ref|YP_007121832.1| photosystem II S4 domain-containing protein [Microcoleus sp. PCC
7113]
gi|428252467|gb|AFZ18426.1| photosystem II S4 domain protein [Microcoleus sp. PCC 7113]
Length = 259
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 84/126 (66%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ E + ++++A +A EV+ +DFL+PP + + ++L +V+ +A
Sbjct: 5 EELLKGVENR---ESIARVIDLAEQAIKTWEVVFTDFLSPPEVAQIQQQFQRLTEVQLLA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ E + VAAL I GNF F P +H DFLG+ILGTG+ R+K
Sbjct: 62 WGGYPQAERQRIAIARSELPLDRAQVAVAALDIAGNFLFDPATHRDFLGAILGTGLVRDK 121
Query: 185 IGDIIL 190
IGDII+
Sbjct: 122 IGDIIV 127
>gi|434397141|ref|YP_007131145.1| photosystem II S4 domain protein [Stanieria cyanosphaera PCC 7437]
gi|428268238|gb|AFZ34179.1| photosystem II S4 domain protein [Stanieria cyanosphaera PCC 7437]
Length = 259
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LL GV ++ EEV I++ A +A EV+ +DFL+P VL E+ KL +V+ VA
Sbjct: 5 EELLAGVENR---EEVARIIDQAEQAIKTWEVVLTDFLSPRVLIETQAIFSKLTEVEIVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + I + AL I GNF F P +H DFLG+ILGTGI R+K
Sbjct: 62 WGGYPQAERQRLGIARQDIPIDQSQIDLVALDIAGNFLFDPATHRDFLGAILGTGIVRDK 121
Query: 185 IGDIIL 190
+GDI++
Sbjct: 122 VGDILV 127
>gi|172036251|ref|YP_001802752.1| putative RNA-binding S4 protein [Cyanothece sp. ATCC 51142]
gi|354553046|ref|ZP_08972353.1| photosystem II S4 domain protein [Cyanothece sp. ATCC 51472]
gi|171697705|gb|ACB50686.1| putative RNA-binding S4 protein [Cyanothece sp. ATCC 51142]
gi|353554876|gb|EHC24265.1| photosystem II S4 domain protein [Cyanothece sp. ATCC 51472]
Length = 259
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 79/126 (62%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+ LLKG+ ++ EE+ I++ A A EV+ SDF +PPV E A +L +++ +
Sbjct: 5 EKLLKGIENR---EEMTRIIDQAEIAIKTWEVVVSDFFSPPVTAEVEKAFNQLTEIEIMV 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+ + PE I +AAL I GNF F P SH DFLG+IL TGI R+K
Sbjct: 62 WGGYPQAERRRIGITRPEIPLEQSQIPLAALDIAGNFLFDPASHRDFLGAILATGIVRDK 121
Query: 185 IGDIIL 190
IGDII+
Sbjct: 122 IGDIIV 127
>gi|220907729|ref|YP_002483040.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
7425]
gi|219864340|gb|ACL44679.1| photosystem II S4 domain protein [Cyanothece sp. PCC 7425]
Length = 259
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LLKGV ++ E + +L+ +A +V+ SDFL+PP L ES L +L ++ ++
Sbjct: 6 ELLKGVENR---ETLSRVLDQVEQALKTWDVVCSDFLSPPELAESQTLLARLTEIHSLGW 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER RL++ E L + + AL I GNF F P SH DFLG+ILGTGI REK+
Sbjct: 63 GGYPQAERQRLAIARQEVPLEGEQVPLVALEIAGNFLFDPASHRDFLGAILGTGIVREKV 122
Query: 186 GDIIL 190
GDII+
Sbjct: 123 GDIIV 127
>gi|218441671|ref|YP_002380000.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
7424]
gi|218174399|gb|ACK73132.1| photosystem II S4 domain protein [Cyanothece sp. PCC 7424]
Length = 259
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 81/126 (64%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+DLLKGV ++ EE+ IL+ A +A E+ +DF +PPVL E ++L +V+ +
Sbjct: 5 EDLLKGVENR---EEIARILDKAEQAIRTWEITLTDFFSPPVLAEVQQIFKRLTEVQLIT 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+ + E I +AA+ I GNF F P +H DFLG++LGTGI R+K
Sbjct: 62 WGGYPQAERQRIGLSRSEIPLDISQIELAAVDIAGNFLFDPANHRDFLGAMLGTGIVRDK 121
Query: 185 IGDIIL 190
+GDII+
Sbjct: 122 VGDIIV 127
>gi|422301480|ref|ZP_16388848.1| RNA-binding S4 [Microcystis aeruginosa PCC 9806]
gi|389789624|emb|CCI14403.1| RNA-binding S4 [Microcystis aeruginosa PCC 9806]
Length = 259
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 89/150 (59%), Gaps = 16/150 (10%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTVTDFLSPAVLAEVERVFQRLTDVSMQK 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + ++ DI ++AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLGISRVDLPLAETDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDII-LQNKG-----------FLCSGCLQ 202
+GDII L +G FLC+ LQ
Sbjct: 122 VGDIIVLGERGAQAIVVPELADFLCANLLQ 151
>gi|427723367|ref|YP_007070644.1| photosystem II S4 domain-containing protein [Leptolyngbya sp. PCC
7376]
gi|427355087|gb|AFY37810.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 7376]
Length = 260
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 84/126 (66%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
DDLLKG ++ EE+ IL+ A +A +++ +DFL+PPVL E+ L +L + +
Sbjct: 6 DDLLKGAENR---EELSRILDQADQAFRTWDIVQTDFLSPPVLYEATAILGRLTEFSFIK 62
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ E L ++ +AA+ I+GNF F +H DFLGS+LGTG+ REK
Sbjct: 63 GGGYPQAERQRLAIARNEIPLEAEHIEIAAIDISGNFLFDTATHRDFLGSLLGTGLVREK 122
Query: 185 IGDIIL 190
+GDI++
Sbjct: 123 VGDILV 128
>gi|428203950|ref|YP_007082539.1| photosystem II S4 domain-containing protein [Pleurocapsa sp. PCC
7327]
gi|427981382|gb|AFY78982.1| photosystem II S4 domain protein [Pleurocapsa sp. PCC 7327]
Length = 259
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 82/126 (65%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ I++ A +A EV +DFL+PPVL E+ +L +++ +A
Sbjct: 5 EELLKGVENR---EEIARIVDKAEQALRTWEVALTDFLSPPVLAEAQQIFGRLTEIEYIA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+ + + I + AL I GNF F P +H DFLG+ILGTGI R+K
Sbjct: 62 WGGYPQAERQRIGMARSDIPLDLSQIQITALDIAGNFLFDPANHRDFLGAILGTGIVRDK 121
Query: 185 IGDIIL 190
+GDII+
Sbjct: 122 VGDIIV 127
>gi|428220252|ref|YP_007104422.1| photosystem II S4 domain-containing protein [Synechococcus sp. PCC
7502]
gi|427993592|gb|AFY72287.1| photosystem II S4 domain protein [Synechococcus sp. PCC 7502]
Length = 258
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 84/126 (66%), Gaps = 6/126 (4%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLL G+ + E + +L++ +A EV+ SDFL+P L E+ +K +VK V
Sbjct: 5 DLLTGLEHR---EVISRLLDLGDQALQTWEVVCSDFLSPSELIEAQQVFKKFTEVKFVIY 61
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY QAERCR+++ H + L +P++V AA+ I+GNF F P SH DFLG+ILGTGI R+K
Sbjct: 62 GGYAQAERCRMAIAHID-LPLEPEMVNLAAIDISGNFLFDPASHRDFLGAILGTGIERQK 120
Query: 185 IGDIIL 190
+GD+IL
Sbjct: 121 VGDLIL 126
>gi|334119785|ref|ZP_08493869.1| photosystem II S4 domain protein [Microcoleus vaginatus FGP-2]
gi|333457426|gb|EGK86049.1| photosystem II S4 domain protein [Microcoleus vaginatus FGP-2]
Length = 261
Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 81/126 (64%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKG+ +++ V L+ A +A EV +DFL+PP L +++ ++L DV+ VA
Sbjct: 7 EELLKGIENRDC---VARALDQAEQAIKTWEVTQTDFLSPPELADTLTVFKRLTDVELVA 63
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ + + VAA+ I GNF F SH DFLG++LGTGI REK
Sbjct: 64 WGGYPQAERQRIAIARSDIPIDSASVNVAAVEIAGNFLFDTASHRDFLGAMLGTGIVREK 123
Query: 185 IGDIIL 190
GD+I+
Sbjct: 124 TGDVIV 129
>gi|428319799|ref|YP_007117681.1| photosystem II S4 domain protein [Oscillatoria nigro-viridis PCC
7112]
gi|428243479|gb|AFZ09265.1| photosystem II S4 domain protein [Oscillatoria nigro-viridis PCC
7112]
Length = 259
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 81/126 (64%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKG+ ++ E V L+ A +A EV +DFL+PP L +++ ++L DV+ VA
Sbjct: 5 EELLKGIENR---ECVARALDQAEQAIKTWEVTQTDFLSPPELADTLTVFKRLTDVELVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ + + +AA+ I GNF F SH DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRIAIARSDIPIDSASVSIAAVEIAGNFLFDTASHRDFLGAMLGTGIVREK 121
Query: 185 IGDIIL 190
GD+I+
Sbjct: 122 TGDVIV 127
>gi|425440202|ref|ZP_18820510.1| RNA-binding S4 [Microcystis aeruginosa PCC 9717]
gi|389719422|emb|CCH96747.1| RNA-binding S4 [Microcystis aeruginosa PCC 9717]
Length = 259
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 88/152 (57%), Gaps = 20/152 (13%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A E+ +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEMTVTDFLSPAVLAEVERVFQRLTDVSMQK 61
Query: 126 QGGYPQAERCRLSVGH---PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGYPQAER RL + P +T P ++AL I GNF F +H DFLG++LGTGI R
Sbjct: 62 WGGYPQAERQRLGIARVDLPWTVTDIP--LSALDIAGNFLFDTANHRDFLGAMLGTGIVR 119
Query: 183 EKIGDII-LQNKG-----------FLCSGCLQ 202
EK+GDII L +G FLC+ LQ
Sbjct: 120 EKVGDIIVLGERGAQAIVVPELADFLCANLLQ 151
>gi|440682854|ref|YP_007157649.1| photosystem II S4 domain protein [Anabaena cylindrica PCC 7122]
gi|428679973|gb|AFZ58739.1| photosystem II S4 domain protein [Anabaena cylindrica PCC 7122]
Length = 259
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLK V ++++I +++ A +A EV+++DFL+PP L E +L +V VA
Sbjct: 5 EELLKSVENRDSI---ARVIDQAEQAIKTWEVVYTDFLSPPELAEIQRVFSRLTEVHLVA 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ E L +AAL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRIAIARSELPLDQSQVAIAALEIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIIL 190
GDII+
Sbjct: 122 TGDIIV 127
>gi|425448148|ref|ZP_18828127.1| RNA-binding S4 [Microcystis aeruginosa PCC 9443]
gi|389731129|emb|CCI04764.1| RNA-binding S4 [Microcystis aeruginosa PCC 9443]
Length = 259
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 81/128 (63%), Gaps = 8/128 (6%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTVTDFLSPAVLAEVERVFQRLTDVSMEK 61
Query: 126 QGGYPQAERCRLSVGH---PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGYPQAER RL + P A+T P ++AL I GNF F +H DFLG++LGTGI R
Sbjct: 62 WGGYPQAERQRLGIARVDLPLAVTDIP--LSALDIAGNFLFDTANHRDFLGAMLGTGIVR 119
Query: 183 EKIGDIIL 190
EK+GDII+
Sbjct: 120 EKVGDIIV 127
>gi|300866534|ref|ZP_07111224.1| RNA-binding S4 [Oscillatoria sp. PCC 6506]
gi|300335491|emb|CBN56384.1| RNA-binding S4 [Oscillatoria sp. PCC 6506]
Length = 259
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKG+ ++ E V ++ A +A E+ +DFL+PP L E+ +L +V+ +A
Sbjct: 5 EELLKGIENR---ECVARAIDQAEQALKTWEISLTDFLSPPELAETQKVFSRLTEVQLIA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ E + + VAAL I GNF F SH DFLGSILG+GI REK
Sbjct: 62 WGGYPQAERQRLAIARSELPLDNSSVSVAALEIAGNFLFDTASHRDFLGSILGSGIVREK 121
Query: 185 IGDIIL 190
GDII+
Sbjct: 122 TGDIIV 127
>gi|113477614|ref|YP_723675.1| RNA-binding protein S4 [Trichodesmium erythraeum IMS101]
gi|110168662|gb|ABG53202.1| RNA-binding S4 [Trichodesmium erythraeum IMS101]
Length = 259
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 81/126 (64%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKG+ ++ E + I+++A +A E+ SDFL+PP + ES +KL +V V+
Sbjct: 5 EELLKGIQNR---ETITRIIDLAEQAIKTWEITQSDFLSPPEIFESETIFQKLTEVDIVS 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ + + + A++I GNF F +H DFLGS+LGTGI REK
Sbjct: 62 WGGYPQAERKRLAIARSDLPIDTSSVELKAINIEGNFLFDTATHRDFLGSMLGTGIEREK 121
Query: 185 IGDIIL 190
GDII+
Sbjct: 122 TGDIIV 127
>gi|440752557|ref|ZP_20931760.1| photosystem II S4 domain protein [Microcystis aeruginosa TAIHU98]
gi|440177050|gb|ELP56323.1| photosystem II S4 domain protein [Microcystis aeruginosa TAIHU98]
Length = 259
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQK 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + + DI ++AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIIL 190
+GDII+
Sbjct: 122 VGDIIV 127
>gi|425434483|ref|ZP_18814952.1| Similar to tr|Q8YT36|Q8YT36 [Microcystis aeruginosa PCC 9432]
gi|389676027|emb|CCH94899.1| Similar to tr|Q8YT36|Q8YT36 [Microcystis aeruginosa PCC 9432]
Length = 259
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQK 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + + DI ++AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIIL 190
+GDII+
Sbjct: 122 VGDIIV 127
>gi|17230382|ref|NP_486930.1| hypothetical protein alr2890 [Nostoc sp. PCC 7120]
gi|17131984|dbj|BAB74589.1| alr2890 [Nostoc sp. PCC 7120]
Length = 259
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 81/127 (63%), Gaps = 6/127 (4%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++++ V +++ A +A EV+ +DFL+PP L E +L DV+ VA
Sbjct: 5 EELLKGVENRDS---VARVIDQAEQAIKTWEVVVTDFLSPPELAEIQRVFSRLTDVQLVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVA--ALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GGYPQAER RL++ E L D V+ L I GNF F +H DFLG++LGTGI RE
Sbjct: 62 WGGYPQAERQRLAIARAE-LPLDQSQVSLLVLEIAGNFLFDSATHRDFLGAMLGTGIVRE 120
Query: 184 KIGDIIL 190
K GDII+
Sbjct: 121 KTGDIIV 127
>gi|425457020|ref|ZP_18836726.1| Similar to tr|Q8YT36|Q8YT36 [Microcystis aeruginosa PCC 9807]
gi|389801734|emb|CCI19139.1| Similar to tr|Q8YT36|Q8YT36 [Microcystis aeruginosa PCC 9807]
Length = 259
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMEK 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + + DI ++AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIIL 190
+GDII+
Sbjct: 122 VGDIIV 127
>gi|425450199|ref|ZP_18830031.1| RNA-binding S4 [Microcystis aeruginosa PCC 7941]
gi|389769055|emb|CCI05983.1| RNA-binding S4 [Microcystis aeruginosa PCC 7941]
Length = 259
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQK 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + + DI ++AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIIL 190
+GDII+
Sbjct: 122 VGDIIV 127
>gi|425460161|ref|ZP_18839643.1| RNA-binding S4 [Microcystis aeruginosa PCC 9808]
gi|389827156|emb|CCI21733.1| RNA-binding S4 [Microcystis aeruginosa PCC 9808]
Length = 259
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERVFQRLTDVSMQK 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + + DI ++AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIIL 190
+GDII+
Sbjct: 122 VGDIIV 127
>gi|428300093|ref|YP_007138399.1| photosystem II S4 domain-containing protein [Calothrix sp. PCC
6303]
gi|428236637|gb|AFZ02427.1| photosystem II S4 domain protein [Calothrix sp. PCC 6303]
Length = 259
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 81/126 (64%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++++ V +++ A +A E++ +DFL+PP L E+ A +L +V VA
Sbjct: 5 EELLKGVENRDS---VARVIDHAEQAIKTWEIVFTDFLSPPELAEAQRAFNRLTEVHLVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ + + +A L + GNF F +H DFLGS+LGTGI REK
Sbjct: 62 WGGYPQAERQRIAIARSDLPLEQAQVEIAVLDVAGNFLFDTATHRDFLGSMLGTGIVREK 121
Query: 185 IGDIIL 190
GDII+
Sbjct: 122 TGDIIV 127
>gi|307152717|ref|YP_003888101.1| photosystem II S4 domain-containing protein [Cyanothece sp. PCC
7822]
gi|306982945|gb|ADN14826.1| photosystem II S4 domain protein [Cyanothece sp. PCC 7822]
Length = 259
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 79/126 (62%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ I++ A A EV +DFL+PPVL E ++L +V +
Sbjct: 5 EELLKGVENR---EEIARIIDKAETAMRTWEVTLTDFLSPPVLAEVQRIFQRLTEVDLIP 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + E + VAA+ I GNF F +H DFLG++LGTG+ REK
Sbjct: 62 WGGYPQAERQRLGISRSEVPFDLSGVAVAAVDIAGNFLFDAANHRDFLGAMLGTGLVREK 121
Query: 185 IGDIIL 190
+GDII+
Sbjct: 122 VGDIIV 127
>gi|170079381|ref|YP_001736019.1| S4 domain-containing protein [Synechococcus sp. PCC 7002]
gi|169887050|gb|ACB00764.1| S4 domain protein [Synechococcus sp. PCC 7002]
Length = 253
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 82/124 (66%), Gaps = 4/124 (3%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
+LKGV ++ E+ +L+ A +A E++ +DFL+PPVL E++ KL +V+ V G
Sbjct: 1 MLKGVENR---AELSRLLDQADQAIRTWEIVQTDFLSPPVLYEALEIFGKLTEVQVVHGG 57
Query: 128 GYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
GYPQAER RL++ E L + +AAL I GNF F +H DFLGS+LGTG+ R+K+G
Sbjct: 58 GYPQAERQRLAIAREEIPLDASHVEIAALDIAGNFLFDTATHRDFLGSLLGTGLVRDKVG 117
Query: 187 DIIL 190
DI++
Sbjct: 118 DILV 121
>gi|166365176|ref|YP_001657449.1| RNA-binding protein S4 [Microcystis aeruginosa NIES-843]
gi|425465358|ref|ZP_18844667.1| RNA-binding S4 [Microcystis aeruginosa PCC 9809]
gi|166087549|dbj|BAG02257.1| RNA-binding S4 [Microcystis aeruginosa NIES-843]
gi|389832398|emb|CCI23996.1| RNA-binding S4 [Microcystis aeruginosa PCC 9809]
Length = 259
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTVTDFLSPAVLAEVERVFQRLTDVSMQK 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + + DI ++AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIIL 190
+GDII+
Sbjct: 122 VGDIIV 127
>gi|119513374|ref|ZP_01632408.1| hypothetical protein N9414_12918 [Nodularia spumigena CCY9414]
gi|119461983|gb|EAW42986.1| hypothetical protein N9414_12918 [Nodularia spumigena CCY9414]
Length = 259
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 81/127 (63%), Gaps = 6/127 (4%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++++ V +++ A +A EV+ +DFL+PP L E +L DV+ VA
Sbjct: 5 EELLKGVENRDS---VARVIDQAEQAIKTWEVVLTDFLSPPELAEINRVFSRLTDVQLVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GGYPQAER R+++ E L +P V AL GNF F SH DFLG++LGTGI RE
Sbjct: 62 WGGYPQAERQRMAIARSE-LPLEPSQVDLVALEFAGNFLFDTASHRDFLGAMLGTGIVRE 120
Query: 184 KIGDIIL 190
K GDI++
Sbjct: 121 KTGDILV 127
>gi|434405253|ref|YP_007148138.1| photosystem II S4 domain protein [Cylindrospermum stagnale PCC
7417]
gi|428259508|gb|AFZ25458.1| photosystem II S4 domain protein [Cylindrospermum stagnale PCC
7417]
Length = 259
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 80/127 (62%), Gaps = 6/127 (4%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV +++ V +++ A +A EV+ +DFL+PP L E +L DV+ VA
Sbjct: 5 EELLKGVENRDT---VARVIDQAEQAIKTWEVVVTDFLSPPELAEVQRVFSRLTDVQLVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVA--ALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GGYPQAER R+++ E L D VA L I GNF F +H DFLG++LGTGI RE
Sbjct: 62 WGGYPQAERQRIAIARSE-LPLDQSQVALVVLEIAGNFLFDTATHRDFLGAMLGTGIIRE 120
Query: 184 KIGDIIL 190
K GD+I+
Sbjct: 121 KTGDVIV 127
>gi|411119486|ref|ZP_11391866.1| photosystem II S4 domain protein [Oscillatoriales cyanobacterium
JSC-12]
gi|410711349|gb|EKQ68856.1| photosystem II S4 domain protein [Oscillatoriales cyanobacterium
JSC-12]
Length = 259
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 81/126 (64%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
DDLLKGV ++ AI +++ + A EV+ +DFL+PP L E L +V+ VA
Sbjct: 5 DDLLKGVENREAI---ARVIDQSELAIKTWEVVCTDFLSPPELAEIQEVFSCLTEVQMVA 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY QAER RL++ E L+ + ++AL I GNF F P +H DFLG+ILGTGI R+K
Sbjct: 62 WGGYLQAERQRLAIARAELPLSVEQVSLSALEIAGNFLFDPATHRDFLGAILGTGIVRDK 121
Query: 185 IGDIIL 190
+GD+++
Sbjct: 122 VGDVLV 127
>gi|298493122|ref|YP_003723299.1| photosystem II S4 domain-containing protein ['Nostoc azollae' 0708]
gi|298235040|gb|ADI66176.1| photosystem II S4 domain protein ['Nostoc azollae' 0708]
Length = 259
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 4/125 (3%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LL+GV ++++I +++ A +A EV+ +DFL+PP L E +L DV VA
Sbjct: 6 ELLRGVENRDSI---ARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTDVHLVAW 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER R+++ E L + AL I GNF F +H DFLG+ILGTGI REK
Sbjct: 63 GGYPQAERQRVTIARSELPLDQSQVAITALEIVGNFLFDTATHRDFLGAILGTGIVREKT 122
Query: 186 GDIIL 190
GDI++
Sbjct: 123 GDIMV 127
>gi|75907235|ref|YP_321531.1| RNA-binding protein S4 [Anabaena variabilis ATCC 29413]
gi|75700960|gb|ABA20636.1| RNA-binding S4 [Anabaena variabilis ATCC 29413]
Length = 259
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++++ V +++ A +A EV+ +DF +PP L E +L DV+ VA
Sbjct: 5 EELLKGVENRDS---VARVIDQAEQAIKTWEVVVTDFFSPPELAEIQRVFSRLTDVQLVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ E + + L I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLAIARAELPLDQSQVSLVVLEIAGNFLFDSATHRDFLGAMLGTGIVREK 121
Query: 185 IGDIIL 190
GDII+
Sbjct: 122 TGDIIV 127
>gi|186683162|ref|YP_001866358.1| RNA-binding S4 domain-containing protein [Nostoc punctiforme PCC
73102]
gi|186465614|gb|ACC81415.1| RNA-binding S4 domain protein [Nostoc punctiforme PCC 73102]
Length = 259
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++++ V +++ A +A EV+ +DFL+PP L E +L +V+ VA
Sbjct: 5 EELLKGVENRDS---VARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFNRLTEVQLVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ E + + A+ I GNF F SH DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRIAIARSELPLDQSQVSLVAVEIAGNFLFDTASHRDFLGAMLGTGIVREK 121
Query: 185 IGDIIL 190
GD+I+
Sbjct: 122 TGDVIV 127
>gi|390441638|ref|ZP_10229680.1| RNA-binding S4 [Microcystis sp. T1-4]
gi|389835056|emb|CCI33806.1| RNA-binding S4 [Microcystis sp. T1-4]
Length = 259
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 81/128 (63%), Gaps = 8/128 (6%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ E++ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EDIAKVIDKAEQAIKTWEVTVTDFLSPAVLAEVERVFQRLTDVSMQK 61
Query: 126 QGGYPQAERCRLSVGH---PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGYPQAER RL + P A+T P ++AL I GNF F +H DFLG++LGTGI R
Sbjct: 62 WGGYPQAERQRLGIARVDLPLAVTDIP--LSALDIAGNFLFDTANHRDFLGAMLGTGIVR 119
Query: 183 EKIGDIIL 190
EK+GDII+
Sbjct: 120 EKVGDIIV 127
>gi|443646827|ref|ZP_21129505.1| photosystem II S4 domain protein [Microcystis aeruginosa
DIANCHI905]
gi|159028854|emb|CAO90659.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443335656|gb|ELS50120.1| photosystem II S4 domain protein [Microcystis aeruginosa
DIANCHI905]
Length = 259
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ EE+ +++ A +A EV +DFL+P VL E ++L DV
Sbjct: 5 EELLKGVENR---EEIAKVIDKAEQAIKTWEVTTTDFLSPAVLAEVERFFQRLTDVSMEK 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL + + + DI ++AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLGIARVDLPLTVTDIPLSALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIIL 190
+GDII+
Sbjct: 122 VGDIIV 127
>gi|427730945|ref|YP_007077182.1| photosystem II S4 domain-containing protein [Nostoc sp. PCC 7524]
gi|427366864|gb|AFY49585.1| photosystem II S4 domain protein [Nostoc sp. PCC 7524]
Length = 259
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++++I +++ A +A EV+ +DFL+PP L E +L +++ VA
Sbjct: 5 EELLKGVENRDSI---ARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTELQLVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ E + + L I GNF F P +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRVAIARSELPLDQSQVNLVLLEIAGNFLFDPATHRDFLGAMLGTGIVREK 121
Query: 185 IGDIIL 190
GDII+
Sbjct: 122 TGDIIV 127
>gi|428224087|ref|YP_007108184.1| photosystem II S4 domain-containing protein [Geitlerinema sp. PCC
7407]
gi|427983988|gb|AFY65132.1| photosystem II S4 domain protein [Geitlerinema sp. PCC 7407]
Length = 259
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
D+LL+ ++ A +++ A RA EV+ +DFL+PP + ++ +L +V+ +
Sbjct: 5 DELLQKAQNREA---AAQLIDAAERAIKTWEVVLTDFLSPPEMADAQQMFGRLTEVQLMG 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ PE L + VA L I GNF F P +H DFLG++LGTGI R+K
Sbjct: 62 WGGYPQAERQRLAIARPEIPLEASQVEVAVLEIAGNFLFDPATHRDFLGAVLGTGIVRDK 121
Query: 185 IGDIIL 190
+GDI++
Sbjct: 122 VGDIVV 127
>gi|254423526|ref|ZP_05037244.1| photosystem II S4 domain protein [Synechococcus sp. PCC 7335]
gi|196191015|gb|EDX85979.1| photosystem II S4 domain protein [Synechococcus sp. PCC 7335]
Length = 259
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 79/125 (63%), Gaps = 4/125 (3%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLLK +K A+ I++ A +A E + +DFL+PP + E+ +L+DV A+A
Sbjct: 6 DLLKHSENKEAL---SRIIDQAEQAIRTWEPVATDFLSPPEVFEAQATFGRLSDVHAIAN 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER RL + E L P +AA+SI GNF F +H DFLGS+LGTGI R K+
Sbjct: 63 GGYPQAERQRLIIARAEIPLDETPVPLAAISIAGNFLFDTATHRDFLGSLLGTGIVRAKV 122
Query: 186 GDIIL 190
GDII+
Sbjct: 123 GDIIV 127
>gi|414078898|ref|YP_006998216.1| photosystem II S4 domain-containing protein [Anabaena sp. 90]
gi|413972314|gb|AFW96403.1| photosystem II S4 domain protein [Anabaena sp. 90]
Length = 259
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV +++ V +++ A +A EV+ +DFL+PP L E +L +V +VA
Sbjct: 5 EELLKGVENRDT---VARVIDQADQAIKTWEVVFTDFLSPPELAEIQRVFSRLTEVHSVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ + ++ + AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRLAIARADLPLDQSEVAIVALDIAGNFLFDTANHRDFLGAMLGTGIVREK 121
Query: 185 IGDIIL 190
GD+I+
Sbjct: 122 TGDVIV 127
>gi|428780106|ref|YP_007171892.1| photosystem II S4 domain-containing protein [Dactylococcopsis
salina PCC 8305]
gi|428694385|gb|AFZ50535.1| photosystem II S4 domain protein [Dactylococcopsis salina PCC 8305]
Length = 259
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 81/126 (64%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+ +LKGV ++ EE+ I+++A +A EV+ +DFL+PPV+ E+ L +++ +
Sbjct: 5 EQILKGVENR---EEITRIIDIAEQAMKTWEVVCTDFLSPPVMVEARERFSSLTEIQFIV 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ + + +AAL + GNF F +H DFLG+ILGTG+ R K
Sbjct: 62 WGGYPQAERSRMAIARSDLPLDQSQVPIAALDVAGNFLFDTANHRDFLGAILGTGVVRGK 121
Query: 185 IGDIIL 190
+GDII+
Sbjct: 122 VGDIIV 127
>gi|119491309|ref|ZP_01623363.1| RNA-binding S4 [Lyngbya sp. PCC 8106]
gi|119453473|gb|EAW34635.1| RNA-binding S4 [Lyngbya sp. PCC 8106]
Length = 259
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 79/126 (62%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LL V +++ I +++ A +A EV ++DFL+PP L E+ +L +V+ V
Sbjct: 5 EELLNSVENRDCI---ARVIDQAEQAIKTWEVTYTDFLSPPELAEAQRIFNRLTEVQLVT 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ E D + V A+ I+GNF F +H DFLGS+LGTGI REK
Sbjct: 62 GGGYPQAERQRIAIAREELPLDDSSVAVEAIDISGNFLFDTATHRDFLGSMLGTGIVREK 121
Query: 185 IGDIIL 190
GDII+
Sbjct: 122 TGDIIV 127
>gi|282897968|ref|ZP_06305963.1| RNA-binding S4 [Raphidiopsis brookii D9]
gi|281197112|gb|EFA72013.1| RNA-binding S4 [Raphidiopsis brookii D9]
Length = 259
Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV +++ I H+++ A +A EV+ +DFL+PP L E +L +V VA
Sbjct: 5 EELLKGVENRDVI---AHVIDQAEQAIKTWEVVITDFLSPPELAEIERVFNRLTEVHLVA 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ E L V L I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRVAIIRSEMPLDVSQVAVTVLDIAGNFLFDTATHRDFLGAMLGTGIVREK 121
Query: 185 IGDIIL 190
GDII+
Sbjct: 122 TGDIII 127
>gi|354567372|ref|ZP_08986541.1| photosystem II S4 domain protein [Fischerella sp. JSC-11]
gi|353542644|gb|EHC12105.1| photosystem II S4 domain protein [Fischerella sp. JSC-11]
Length = 259
Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKG+ +++ V +++ A +A EV+ +DFL+PP L E +L +V+ +A
Sbjct: 5 EELLKGIENRDT---VARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVQLLA 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ E L +AAL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERQRMAIARSELPLDLSQVAIAALDIAGNFLFDTATHRDFLGAMLGTGIIREK 121
Query: 185 IGDIIL 190
GDII+
Sbjct: 122 TGDIIV 127
>gi|427736647|ref|YP_007056191.1| photosystem II S4 domain-containing protein [Rivularia sp. PCC
7116]
gi|427371688|gb|AFY55644.1| photosystem II S4 domain protein [Rivularia sp. PCC 7116]
Length = 259
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 81/126 (64%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLK V +++ V +++ A +A EV+ +DFL+PP L E+ KL +V+ +A
Sbjct: 5 EELLKNVENRDT---VARVIDCAEQAIRTWEVVFTDFLSPPELAEAQQGFSKLTEVELLA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+++ E + + + AL+I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYPQAERKRIAIARNELPLDESQVELVALNIAGNFLFDTATHRDFLGAMLGTGIVREK 121
Query: 185 IGDIIL 190
GDII+
Sbjct: 122 TGDIIV 127
>gi|428219626|ref|YP_007104091.1| photosystem II S4 domain-containing protein [Pseudanabaena sp. PCC
7367]
gi|427991408|gb|AFY71663.1| photosystem II S4 domain protein [Pseudanabaena sp. PCC 7367]
Length = 258
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 83/125 (66%), Gaps = 4/125 (3%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLL G+ +K E + + + RA + EV+ SDFL+PP L E+ L+KL ++ AV+
Sbjct: 5 DLLDGLENK---EILSRLFDQGDRALNTWEVVCSDFLSPPELAEAHEVLKKLTEIHAVSW 61
Query: 127 GGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAERCRL++ + + ++ +AA+ + GNF F +H DFLG+ LG+GI R+K+
Sbjct: 62 GGYPQAERCRLALARVDLPLAPENVELAAIDVAGNFLFDAATHRDFLGACLGSGIERQKV 121
Query: 186 GDIIL 190
GDII+
Sbjct: 122 GDIIV 126
>gi|409990192|ref|ZP_11273604.1| RNA-binding protein S4 [Arthrospira platensis str. Paraca]
gi|409938945|gb|EKN80197.1| RNA-binding protein S4 [Arthrospira platensis str. Paraca]
Length = 259
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 82/125 (65%), Gaps = 4/125 (3%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LL G+ +++ I I+++A +A E+ ++FL+PP + E+ ++L +V+A +
Sbjct: 6 ELLNGIENRDCI---ARIIDLAEQALKTWEITQTEFLSPPEIAEAQGIFQRLTEVQAFSW 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER R+++ E L S +AA+ I+GNF F +H DFLGS+LGTGI REK
Sbjct: 63 GGYPQAERQRMAIARSELPLDSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKT 122
Query: 186 GDIIL 190
GDII+
Sbjct: 123 GDIIV 127
>gi|291568923|dbj|BAI91195.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 259
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 82/125 (65%), Gaps = 4/125 (3%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LL G+ +++ I I+++A +A E+ ++FL+PP + E+ ++L +V+A +
Sbjct: 6 ELLNGIENRDCI---ARIIDLAEQALKTWEITQTEFLSPPEIAEAQGIFQRLTEVQAFSW 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER R+++ E L S +AA+ I+GNF F +H DFLGS+LGTGI REK
Sbjct: 63 GGYPQAERQRMAIARSELPLDSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKT 122
Query: 186 GDIIL 190
GDII+
Sbjct: 123 GDIIV 127
>gi|428305393|ref|YP_007142218.1| photosystem II S4 domain-containing protein [Crinalium epipsammum
PCC 9333]
gi|428246928|gb|AFZ12708.1| photosystem II S4 domain protein [Crinalium epipsammum PCC 9333]
Length = 259
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 79/126 (62%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++ E +++ A +A EV+ +DFL+PP L E +L +V VA
Sbjct: 5 EELLKGVENR---ETAARVIDQAEQALKTWEVVVTDFLSPPELVEMQQMFGRLTEVHLVA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ E P + +AA+SI GNF F +H DFLGS+LG GI REK
Sbjct: 62 GGGYPQAERQRLAIARSELPLELPQVPLAAVSIAGNFLFDSATHRDFLGSMLGCGIVREK 121
Query: 185 IGDIIL 190
GDII+
Sbjct: 122 TGDIIV 127
>gi|428769447|ref|YP_007161237.1| photosystem II S4 domain-containing protein [Cyanobacterium
aponinum PCC 10605]
gi|428683726|gb|AFZ53193.1| photosystem II S4 domain protein [Cyanobacterium aponinum PCC
10605]
Length = 259
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 79/126 (62%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLK V +K E++ +++ A +A E++ +DFL+PPVL E L +VK V
Sbjct: 5 EELLKRVENK---EDIARVIDKAEKAVKTWELVVTDFLSPPVLAEVNEIFASLTEVKIVC 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+ + E +I + AL + GNF F +H DFLG+ILGTGI R+K
Sbjct: 62 WGGYPQAERQRVGIHREEVYAGVAEIPLMALDVAGNFLFDTATHRDFLGAILGTGIVRDK 121
Query: 185 IGDIIL 190
IGDII+
Sbjct: 122 IGDIIV 127
>gi|282899112|ref|ZP_06307093.1| RNA-binding S4 [Cylindrospermopsis raciborskii CS-505]
gi|281196028|gb|EFA70944.1| RNA-binding S4 [Cylindrospermopsis raciborskii CS-505]
Length = 259
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV +++ I H+++ A +A EV+ +DFL+PP L E +L +V VA
Sbjct: 5 EELLKGVENRDII---AHVIDQAEQAIKTWEVVITDFLSPPELAEIERVFSRLMEVHLVA 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY QAER R+++ E L +V L I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYLQAERQRVAIARSEMPLDISQVVVTVLDIAGNFLFDTATHRDFLGAMLGTGIVREK 121
Query: 185 IGDIIL 190
GDII+
Sbjct: 122 TGDIII 127
>gi|443475431|ref|ZP_21065381.1| photosystem II S4 domain protein [Pseudanabaena biceps PCC 7429]
gi|443019738|gb|ELS33786.1| photosystem II S4 domain protein [Pseudanabaena biceps PCC 7429]
Length = 258
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 84/131 (64%), Gaps = 7/131 (5%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLL V +++ + +L++ RA EV+ SDFL+PP + E++ K+ ++ +A
Sbjct: 5 DLLNHVENRDTL---SRLLDLGDRAVQTWEVVCSDFLSPPEITEALQVFGKMTEIHCLAW 61
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVA--ALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY QAER RL++ E L DP +V+ A+SI GNF F +H DFLG+ILGTGI R+K
Sbjct: 62 GGYEQAERQRLAIARSE-LPLDPSMVSLTAISIAGNFLFDTATHRDFLGAILGTGIERQK 120
Query: 185 IGDI-ILQNKG 194
+GD+ +L KG
Sbjct: 121 VGDVNVLGEKG 131
>gi|423067872|ref|ZP_17056662.1| photosystem II S4 domain protein [Arthrospira platensis C1]
gi|406710615|gb|EKD05822.1| photosystem II S4 domain protein [Arthrospira platensis C1]
Length = 287
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 82/125 (65%), Gaps = 4/125 (3%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LL G+ +++ I I+++A +A E+ ++FL+PP + E+ +L +++A++
Sbjct: 34 ELLNGIENRDCI---ARIIDLAEQALKTWEITQTEFLSPPEIAEAQGIFRRLTEIQALSW 90
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER R+++ E L S +AA+ I+GNF F +H DFLGS+LGTGI REK
Sbjct: 91 GGYPQAERQRMAIARSEIPLDSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKT 150
Query: 186 GDIIL 190
GD+I+
Sbjct: 151 GDLIV 155
>gi|16330752|ref|NP_441480.1| hypothetical protein sll1252 [Synechocystis sp. PCC 6803]
gi|383322494|ref|YP_005383347.1| hypothetical protein SYNGTI_1585 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383325663|ref|YP_005386516.1| hypothetical protein SYNPCCP_1584 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383491547|ref|YP_005409223.1| hypothetical protein SYNPCCN_1584 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384436814|ref|YP_005651538.1| hypothetical protein SYNGTS_1585 [Synechocystis sp. PCC 6803]
gi|451814910|ref|YP_007451362.1| hypothetical protein MYO_116000 [Synechocystis sp. PCC 6803]
gi|1653245|dbj|BAA18160.1| sll1252 [Synechocystis sp. PCC 6803]
gi|339273846|dbj|BAK50333.1| hypothetical protein SYNGTS_1585 [Synechocystis sp. PCC 6803]
gi|359271813|dbj|BAL29332.1| hypothetical protein SYNGTI_1585 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359274983|dbj|BAL32501.1| hypothetical protein SYNPCCN_1584 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359278153|dbj|BAL35670.1| hypothetical protein SYNPCCP_1584 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407958671|dbj|BAM51911.1| hypothetical protein BEST7613_2980 [Bacillus subtilis BEST7613]
gi|451780879|gb|AGF51848.1| hypothetical protein MYO_116000 [Synechocystis sp. PCC 6803]
Length = 259
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+ LLKG D+ AI +++ A +A EV+ SDF PP++ E + L ++ +
Sbjct: 5 EALLKGAPDREAI---ARVIDQAEQALRTWEVVVSDFCAPPLIAEIQTRFDSLTELHFLP 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ E L ++ + AL + GNF F P SH DFLG++LGTG+ REK
Sbjct: 62 WGGYPQAERQRLAIARAEIPLETEQIPLTALDVAGNFLFDPASHRDFLGALLGTGLVREK 121
Query: 185 IGDIIL 190
+GDIIL
Sbjct: 122 VGDIIL 127
>gi|209525233|ref|ZP_03273776.1| photosystem II S4 domain protein [Arthrospira maxima CS-328]
gi|209494418|gb|EDZ94730.1| photosystem II S4 domain protein [Arthrospira maxima CS-328]
Length = 259
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 82/125 (65%), Gaps = 4/125 (3%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LL G+ +++ I I+++A +A E+ ++FL+PP + E+ +L +++A++
Sbjct: 6 ELLNGIENRDCI---ARIIDLAEQALKTWEITQTEFLSPPEIAEAQGIFRRLTEIQALSW 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER R+++ E L S +AA+ I+GNF F +H DFLGS+LGTGI REK
Sbjct: 63 GGYPQAERQRMAIARSEIPLDSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKT 122
Query: 186 GDIIL 190
GD+I+
Sbjct: 123 GDLIV 127
>gi|376002425|ref|ZP_09780258.1| conserved hypothetical protein [Arthrospira sp. PCC 8005]
gi|375329165|emb|CCE16011.1| conserved hypothetical protein [Arthrospira sp. PCC 8005]
Length = 259
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 82/125 (65%), Gaps = 4/125 (3%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LL G+ +++ I I+++A +A E+ ++FL+PP + E+ +L +++A++
Sbjct: 6 ELLNGIENRDCI---ARIIDLAEQALKTWEITQTEFLSPPEIAEAQGIFRRLTEIQALSW 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER R+++ E L S +AA+ I+GNF F +H DFLGS+LGTGI REK
Sbjct: 63 GGYPQAERQRMAIARSEIPLDSSHVEIAAIDISGNFLFDTATHRDFLGSLLGTGIVREKT 122
Query: 186 GDIIL 190
GD+I+
Sbjct: 123 GDLIV 127
>gi|81300312|ref|YP_400520.1| RNA-binding S4 [Synechococcus elongatus PCC 7942]
gi|81169193|gb|ABB57533.1| RNA-binding S4 [Synechococcus elongatus PCC 7942]
Length = 259
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 83/130 (63%), Gaps = 5/130 (3%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLL G +++ + ++++A ++ E SDFL+PP L E+ L +L +++ +
Sbjct: 6 DLLAGADNRDCL---ARLIDLAEQSIRTWEPAISDFLSPPELAEAQERLGRLTELQLLPW 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER RL++ E L D +AA+ I GNF F P SH DFLGS+LGTG+ REK+
Sbjct: 63 GGYPQAERQRLAIARSEMPLDVDQIAIAAVEIAGNFLFDPASHRDFLGSLLGTGLVREKV 122
Query: 186 GDI-ILQNKG 194
GDI +L ++G
Sbjct: 123 GDILVLGDRG 132
>gi|434387463|ref|YP_007098074.1| photosystem II S4 domain protein [Chamaesiphon minutus PCC 6605]
gi|428018453|gb|AFY94547.1| photosystem II S4 domain protein [Chamaesiphon minutus PCC 6605]
Length = 259
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 81/127 (63%), Gaps = 6/127 (4%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLK V ++ E V +++A RA EV+ +DFL+PP + E +L+DV+ +A
Sbjct: 5 EELLKRVENR---EVVARAIDLADRAIKNWEVVETDFLSPPEIAEIKSVFSRLSDVEIIA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GGYPQAER RL + E L +P V AA+ I GNF F P +H DFLG++LG GI R+
Sbjct: 62 TGGYPQAERQRLGICRAE-LPFEPSQVPLAAIQIAGNFLFDPPTHRDFLGAMLGCGIVRD 120
Query: 184 KIGDIIL 190
K GDII+
Sbjct: 121 KTGDIIV 127
>gi|427707479|ref|YP_007049856.1| photosystem II S4 domain-containing protein [Nostoc sp. PCC 7107]
gi|427359984|gb|AFY42706.1| photosystem II S4 domain protein [Nostoc sp. PCC 7107]
Length = 259
Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 81/127 (63%), Gaps = 6/127 (4%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLKGV ++++ V +++ A +A EV+ +DFL+PP L E +L +V+ +A
Sbjct: 5 EELLKGVENRDS---VARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRIFNRLTEVQLLA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVA--ALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GGYPQAER R+++ E L D VA L + GNF F +H DFLG++LGTGI RE
Sbjct: 62 WGGYPQAERQRMAIARGE-LPLDESQVALVVLEVAGNFLFDTATHRDFLGAMLGTGIVRE 120
Query: 184 KIGDIIL 190
K GD+I+
Sbjct: 121 KTGDVIV 127
>gi|428777211|ref|YP_007168998.1| photosystem II S4 domain-containing protein [Halothece sp. PCC
7418]
gi|428691490|gb|AFZ44784.1| photosystem II S4 domain protein [Halothece sp. PCC 7418]
Length = 259
Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 81/126 (64%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+++L+GV ++ EE+ ++++A +A E + +DFL+PPV E+ L +++ +
Sbjct: 5 EEILRGVENR---EEITRVIDIAEQAIKTWETVCTDFLSPPVAVEAQDKFSLLTEIQFMV 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R+ + E + +AAL ++GNF F +H DFLG+ILGTG+ R+K
Sbjct: 62 WGGYPQAERVRMGITRAELPLDQSQVPIAALDVSGNFLFDTANHRDFLGAILGTGVVRQK 121
Query: 185 IGDIIL 190
+GDI++
Sbjct: 122 VGDIVV 127
>gi|427420696|ref|ZP_18910879.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 7375]
gi|425756573|gb|EKU97427.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 7375]
Length = 259
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
DDLLKGV + E + +++ A ++ E + +DFL+PP L E+ +L D+
Sbjct: 5 DDLLKGVENT---ETLTRVIDQADQSIRTWEPVTTDFLSPPELYEAQAIFGRLTDIHTQV 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL++ E ++ +A LS+ GNF F +H DFLG++LGTGI REK
Sbjct: 62 HGGYPQAERQRLTIARTEIPLEGQELPLALLSVAGNFLFDTATHRDFLGALLGTGIVREK 121
Query: 185 IGDIIL 190
+GDII+
Sbjct: 122 VGDIIV 127
>gi|427720370|ref|YP_007068364.1| photosystem II S4 domain-containing protein [Calothrix sp. PCC
7507]
gi|427352806|gb|AFY35530.1| photosystem II S4 domain protein [Calothrix sp. PCC 7507]
Length = 259
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLK V ++++I +++ A +A EV+ +DFL+PP L E +L +V+ V
Sbjct: 5 EELLKSVENRDSI---ARVIDQAEQAIKTWEVVLTDFLSPPELAEIQRVFSRLTEVQLVT 61
Query: 126 QGGYPQAERCRLSVGHPEA--LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GGYPQAER R+++ E S D+V L I GNF F SH DFLG++LGTGI RE
Sbjct: 62 WGGYPQAERQRIAIARAEMPLDQSQVDLV-LLEIAGNFLFDTASHRDFLGAMLGTGIVRE 120
Query: 184 KIGDIIL 190
K GDI++
Sbjct: 121 KTGDIVV 127
>gi|443314925|ref|ZP_21044448.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 6406]
gi|442785487|gb|ELR95304.1| photosystem II S4 domain protein [Leptolyngbya sp. PCC 6406]
Length = 276
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 6/126 (4%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLLK V K+A+ +L+ A +A EV+ +DFL+PP L E+ ++L +V+ +A
Sbjct: 23 DLLKAVDHKDAL---TRLLDQADQAIRTWEVVVTDFLSPPELVEAQSLFQRLTEVQFIAS 79
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER R ++ E L DP + + I GNF F +H DFLG++LGTG+ REK
Sbjct: 80 GGYPQAERQRGAIARAE-LPLDPSQIPLTLVDIAGNFLFDTATHRDFLGALLGTGLVREK 138
Query: 185 IGDIIL 190
+GDII+
Sbjct: 139 VGDIIV 144
>gi|158337091|ref|YP_001518266.1| S4-like domain-containing protein [Acaryochloris marina MBIC11017]
gi|158307332|gb|ABW28949.1| uncharacterized conserved protein, contains S4-like domain
[Acaryochloris marina MBIC11017]
Length = 259
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 78/124 (62%), Gaps = 4/124 (3%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
LL GV + + +L+ A +A EV+ S FL+PP L E+ L +V +A G
Sbjct: 7 LLNGVEHTDCM---SRLLDQATQALKTWEVVVSAFLSPPELAEAQQMFAPLTEVSILAWG 63
Query: 128 GYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
GYPQAER R+++ H + + +AALSI+GNF F P SH DFLG++LGTGI R+++G
Sbjct: 64 GYPQAERQRIAIAHSDLPLDQSQVELAALSISGNFLFDPASHRDFLGALLGTGIVRDQVG 123
Query: 187 DIIL 190
DI++
Sbjct: 124 DILV 127
>gi|359460617|ref|ZP_09249180.1| S4-like domain-containing protein [Acaryochloris sp. CCMEE 5410]
Length = 259
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 78/124 (62%), Gaps = 4/124 (3%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
LL GV + + +L+ A +A EV+ S FL+PP L E+ L +V +A G
Sbjct: 7 LLNGVEHTDCM---SRLLDQATQALKTWEVVVSAFLSPPELAEAQQMFAPLTEVSILAWG 63
Query: 128 GYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
GYPQAER R+++ H + + +AALSI+GNF F P SH DFLG++LGTGI R+++G
Sbjct: 64 GYPQAERQRIAIAHSDLPLDQSQVDLAALSISGNFLFDPASHRDFLGALLGTGIVRDQVG 123
Query: 187 DIIL 190
DI++
Sbjct: 124 DILV 127
>gi|443312798|ref|ZP_21042413.1| photosystem II S4 domain protein [Synechocystis sp. PCC 7509]
gi|442777254|gb|ELR87532.1| photosystem II S4 domain protein [Synechocystis sp. PCC 7509]
Length = 259
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 79/126 (62%), Gaps = 4/126 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+++LKGV ++++I +++ A +A EV+ +DFL+PP L E +L +V+ +A
Sbjct: 5 EEILKGVENRDSI---ARVIDRAEQAIKTWEVVLTDFLSPPELAELQKVFSRLTEVQLLA 61
Query: 126 QGGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY QAER RL+V E L + AL I GNF F +H DFLG++LGTGI REK
Sbjct: 62 WGGYEQAERQRLAVARSEMPLERHQVELVALEIAGNFLFDTATHRDFLGAMLGTGIVREK 121
Query: 185 IGDIIL 190
GD+I+
Sbjct: 122 TGDVIV 127
>gi|443320974|ref|ZP_21050044.1| photosystem II S4 domain protein [Gloeocapsa sp. PCC 73106]
gi|442789300|gb|ELR98963.1| photosystem II S4 domain protein [Gloeocapsa sp. PCC 73106]
Length = 259
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 82/126 (65%), Gaps = 6/126 (4%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
++LK V ++ EE+ IL+++ +A ++ +DFL+P +L E++ L ++ +A
Sbjct: 6 EILKRVENR---EEIARILDLSEQAWKTWSIVLTDFLSPTILVEALPLFTDLTELHCLAW 62
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGYPQAER RL +G E + D ++V A L I GNF F +H DFLG+ILGTGI R+K
Sbjct: 63 GGYPQAERQRLGLGRTE-VPIDTEVVELAVLKIEGNFLFDVATHRDFLGAILGTGIVRDK 121
Query: 185 IGDIIL 190
IGDII+
Sbjct: 122 IGDIIV 127
>gi|86609679|ref|YP_478441.1| S4 domain-containing protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558221|gb|ABD03178.1| S4 domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 259
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 8/120 (6%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E + +L++ +A +V+ SDFL+PP + E L L +++ A GGYPQAER RL+
Sbjct: 8 ETLARVLDLGEQALKTWQVVWSDFLSPPEIAEVQARLCNLTELQVWAWGGYPQAERQRLA 67
Query: 139 VGHPEA------LTSDPDIV--AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ E SDP+ + AA+ I GNF F P +H DFLG++LG GIAREK+GDI+L
Sbjct: 68 LARSEVGLDVRDPKSDPEGIPLAAIQIQGNFLFDPATHRDFLGALLGAGIAREKVGDILL 127
>gi|56752497|ref|YP_173198.1| hypothetical protein syc2488_d [Synechococcus elongatus PCC 6301]
gi|56687456|dbj|BAD80678.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 259
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 82/130 (63%), Gaps = 5/130 (3%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DL G +++ + ++++A ++ E SDFL+PP L E+ L +L +++ +
Sbjct: 6 DLPAGADNRDCL---ARLIDLAEQSIRTWEPAISDFLSPPELAEAQERLGRLTELQLLPW 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGYPQAER RL++ E L D +AA+ I GNF F P SH DFLGS+LGTG+ REK+
Sbjct: 63 GGYPQAERQRLAIARSEMPLDVDQIAIAAVEIAGNFLFDPASHRDFLGSLLGTGLVREKV 122
Query: 186 GDI-ILQNKG 194
GDI +L ++G
Sbjct: 123 GDILVLGDRG 132
>gi|428772974|ref|YP_007164762.1| photosystem II S4 domain-containing protein [Cyanobacterium
stanieri PCC 7202]
gi|428687253|gb|AFZ47113.1| photosystem II S4 domain protein [Cyanobacterium stanieri PCC 7202]
Length = 259
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+D+L V ++ E+ +L+ A +A E++ +DFL+PPVL E +L +V+ +
Sbjct: 5 EDILNRVENR---AEIAKVLDKAEQAIKTWELVVTDFLSPPVLAEVNEIFAQLTEVQIIP 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GG+PQAER R+ + H E + D VAAL I GNF F +H DFLG+ILG G+ RE
Sbjct: 62 WGGFPQAERKRVGI-HREEIPCDVSQMPVAALDIAGNFLFDTATHRDFLGAILGAGVVRE 120
Query: 184 KIGDIIL 190
K+GDII+
Sbjct: 121 KVGDIIV 127
>gi|86606443|ref|YP_475206.1| S4 domain-containing protein [Synechococcus sp. JA-3-3Ab]
gi|86554985|gb|ABC99943.1| S4 domain protein [Synechococcus sp. JA-3-3Ab]
Length = 262
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 80/128 (62%), Gaps = 7/128 (5%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LLKG + E + IL++ +A +V+ SDFL+P + E L LA+++ +A
Sbjct: 6 ELLKGAEYR---ETLARILDLGEQALKTWQVVWSDFLSPAEVAEVQSRLHNLAELQVMAW 62
Query: 127 GGYPQAERCRLSVGHPEALT----SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGY QAER RL++ PE ++ +AA+ I GNF F P +H DFLG++L TGIAR
Sbjct: 63 GGYAQAERQRLALARPEVSLEVEGAEGIPLAAVQIQGNFLFDPATHRDFLGALLATGIAR 122
Query: 183 EKIGDIIL 190
EK+GDI++
Sbjct: 123 EKVGDILV 130
>gi|37519960|ref|NP_923337.1| hypothetical protein gll0391 [Gloeobacter violaceus PCC 7421]
gi|35210952|dbj|BAC88332.1| gll0391 [Gloeobacter violaceus PCC 7421]
Length = 262
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 79/131 (60%), Gaps = 5/131 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLK ++A+ V + E A R S V+ SDF +PP + E + +L +V A A
Sbjct: 8 EELLKRAEHRDALARVLDLAETALRDWS---VVTSDFYSPPEVGECLDVFSRLVEVHAAA 64
Query: 126 QGGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY QAER R++V A+ + +AA+ I GNF F SH DFLG+ILGTGI R K
Sbjct: 65 WGGYSQAERQRIAVSRDNIAIETAAIPLAAVDIRGNFLFDAASHRDFLGAILGTGIVRGK 124
Query: 185 IGDI-ILQNKG 194
+GDI +L ++G
Sbjct: 125 VGDILVLGDRG 135
>gi|255081170|ref|XP_002507807.1| predicted protein [Micromonas sp. RCC299]
gi|226523083|gb|ACO69065.1| predicted protein [Micromonas sp. RCC299]
Length = 311
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 13/138 (9%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
LL GV +I V I E A+ AS R ++FL P + ++ + ++++AD +A G
Sbjct: 46 LLSGV-HPESIAAVSAIAERAQAASDRWGTEVTEFLDPALAADARVVIDRMADCEARPWG 104
Query: 128 GYPQAERCRLSVGHPEALTSDPD------------IVAALSITGNFGFQPCSHGDFLGSI 175
GY +AER RL +G E L D D VA L ++GNF F H DFLG+
Sbjct: 105 GYDRAERVRLVIGRREVLDGDGDDSFAALTDATNGCVALLQVSGNFMFDAADHRDFLGAA 164
Query: 176 LGTGIAREKIGDIILQNK 193
LG GI R+++GDI++Q +
Sbjct: 165 LGAGIERDRLGDILVQGE 182
>gi|422293742|gb|EKU21042.1| rna-binding s4 [Nannochloropsis gaditana CCMP526]
Length = 325
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL------- 137
+E A +A S E+ DF PP + L ++AD+ GG+PQAER R+
Sbjct: 80 VEAADKAVSIWEMQVIDFCRPPEVATMTRVLGRVADLSITCDGGFPQAERQRVFFSRALD 139
Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
+V +A +AA+S+ GNF F +H DFLG++LGTGIAREK+GDI+LQ +
Sbjct: 140 YAVDEEDARKERGGYLAAISVEGNFIFDRATHRDFLGALLGTGIAREKVGDILLQGE 196
>gi|303285910|ref|XP_003062245.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456656|gb|EEH53957.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 244
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 68/110 (61%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
I E A AS V + FL P + +++ + ++ADV A GGY +AER RL +G E
Sbjct: 3 IAERAEAASDAWSVHVTPFLDPALAADALAVVGRMADVDARPWGGYDRAERVRLVIGRAE 62
Query: 144 ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
L + P V+A ++GNF F H DFLG++LGTGI R+++GDI++Q +
Sbjct: 63 VLDAPPACVSAYKLSGNFMFDAADHRDFLGAVLGTGIERDRVGDILVQGE 112
>gi|374308765|ref|YP_005055196.1| S4 domain-containing protein [Filifactor alocis ATCC 35896]
gi|291167097|gb|EFE29143.1| S4 domain protein [Filifactor alocis ATCC 35896]
Length = 263
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E+V +L++ ++ EV HSDFLTP +E L + DV+ G Q+ER +S
Sbjct: 20 EKVLRVLDIVQQVLYTHEVKHSDFLTPYEQRELASVLNGIYDVRYSFDGMSEQSERKIVS 79
Query: 139 VGHPEAL-TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFLC 197
+ +P+ L S DI+ L ITGN F SH D+LGSILG G+ REKIGDI + G
Sbjct: 80 I-YPDYLEESCQDILVCLKITGNTQFSKLSHRDYLGSILGLGLRREKIGDIFVVKDGAYI 138
Query: 198 SGCLQ 202
CLQ
Sbjct: 139 V-CLQ 142
>gi|435853593|ref|YP_007314912.1| photosystem II S4 domain protein [Halobacteroides halobius DSM
5150]
gi|433670004|gb|AGB40819.1| photosystem II S4 domain protein [Halobacteroides halobius DSM
5150]
Length = 261
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 75/138 (54%), Gaps = 14/138 (10%)
Query: 64 NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
N + LL + K A V IL+ A A + +DFL P L + L ++ D+K
Sbjct: 3 NKEKLLSHLDSKEA-SNVDKILDKAELALIDHKPTFTDFLNPRQLYIAKPVLAQIRDLKY 61
Query: 124 VAQGGYPQAERCRLSVGHPEALTSD---PDIV----AALSITGNFGFQPCSHGDFLGSIL 176
+ GGY +AER L AL D PD++ L+ITG F FQ SH DFLG+IL
Sbjct: 62 LEYGGYNKAERKML------ALVPDYYIPDMIDPPLTVLNITGQFKFQQVSHRDFLGAIL 115
Query: 177 GTGIAREKIGDIILQNKG 194
GTGI R+K+GD++L KG
Sbjct: 116 GTGIKRKKVGDLVLYKKG 133
>gi|306520977|ref|ZP_07407324.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-32g58]
Length = 252
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+++ A +V ++FL P +K ++ L ++K GGY QAER + + +P
Sbjct: 22 VIDKANSCIKNYDVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYEQAERSTVFI-YPF 80
Query: 144 ALTSD--PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ + D + L I GNF F+ SH D+LGSILG GI REKIGDII+ +
Sbjct: 81 YMEYEDIEDTLRFLQIEGNFKFKNISHKDYLGSILGLGIKREKIGDIIIHD 131
>gi|254976209|ref|ZP_05272681.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-66c26]
gi|255093596|ref|ZP_05323074.1| putative RNA-binding cell division protein [Clostridium difficile
CIP 107932]
gi|255307652|ref|ZP_05351823.1| putative RNA-binding cell division protein [Clostridium difficile
ATCC 43255]
gi|255315344|ref|ZP_05356927.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-76w55]
gi|255518009|ref|ZP_05385685.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-97b34]
gi|255651125|ref|ZP_05398027.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-37x79]
gi|260684191|ref|YP_003215476.1| RNA-binding cell division protein [Clostridium difficile CD196]
gi|260687850|ref|YP_003218984.1| RNA-binding cell division protein [Clostridium difficile R20291]
gi|384361833|ref|YP_006199685.1| RNA-binding cell division protein [Clostridium difficile BI1]
gi|423092653|ref|ZP_17080457.1| S4 domain protein [Clostridium difficile 70-100-2010]
gi|260210354|emb|CBA64710.1| putative RNA-binding cell division protein [Clostridium difficile
CD196]
gi|260213867|emb|CBE05880.1| putative RNA-binding cell division protein [Clostridium difficile
R20291]
gi|357553523|gb|EHJ35270.1| S4 domain protein [Clostridium difficile 70-100-2010]
Length = 261
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+++ A +V ++FL P +K ++ L ++K GGY QAER + + +P
Sbjct: 22 VIDKANSCIKNYDVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYEQAERSTVFI-YPF 80
Query: 144 ALTSD--PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ + D + L I GNF F+ SH D+LGSILG GI REKIGDII+ +
Sbjct: 81 YMEYEDIEDTLRFLQIEGNFKFKNISHKDYLGSILGLGIKREKIGDIIIHD 131
>gi|255656596|ref|ZP_05402005.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-23m63]
gi|296449950|ref|ZP_06891714.1| possible ribosomal protein S4e [Clostridium difficile NAP08]
gi|296878332|ref|ZP_06902340.1| possible ribosomal protein S4e [Clostridium difficile NAP07]
gi|296261220|gb|EFH08051.1| possible ribosomal protein S4e [Clostridium difficile NAP08]
gi|296430630|gb|EFH16469.1| possible ribosomal protein S4e [Clostridium difficile NAP07]
Length = 261
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+++ A +V ++FL P +K ++ L ++K GGY QAER + + +P
Sbjct: 22 VIDKANSCIKNYDVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYEQAERSTVFI-YPF 80
Query: 144 ALTSD--PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ + D + L I GNF F+ SH D+LGSILG GI REKIGDII+ +
Sbjct: 81 YMEYEDIEDTLRFLQIEGNFKFKNISHKDYLGSILGLGIKREKIGDIIIHD 131
>gi|308805044|ref|XP_003079834.1| unnamed protein product [Ostreococcus tauri]
gi|116058291|emb|CAL53480.1| unnamed protein product [Ostreococcus tauri]
Length = 306
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALE-KLADVKAVAQ-GGYPQAERCR 136
E V +E RA R V ++F+ P + + ++ + D A+ Q GG+ AER R
Sbjct: 57 ETVSRAIERGERALERWSVETTEFMDPGAMTSVVSSVRARFGDEVAIEQWGGFSAAERRR 116
Query: 137 LSVGHPEALTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
++ E SD ++ V L ++GNF F +H DFLG+ILGTGI RE++GDI++
Sbjct: 117 ATISRSETPASDEEVRANVKVLRVSGNFMFDAATHRDFLGAILGTGIKRERVGDIVV 173
>gi|145348001|ref|XP_001418446.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578675|gb|ABO96739.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 303
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA--DVKAVAQGGYPQAERCRLS 138
VK +E A R R V +FL P L A+ + +V+ A GG+ AER R +
Sbjct: 57 VKRAVERAERVRDRWTVETIEFLDPGALHSVENAVRAVCGDEVEVRAWGGFASAERRRAT 116
Query: 139 VGHPEALTSDP--DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ +++ + D V L + GNF F +H DFLG+ILGTGI REK+GDI++
Sbjct: 117 IARADSVDEEEIRDTVRVLRVQGNFMFDAATHRDFLGAILGTGIKREKVGDIVV 170
>gi|126700234|ref|YP_001089131.1| RNA-binding cell division protein [Clostridium difficile 630]
gi|255101784|ref|ZP_05330761.1| putative RNA-binding cell division protein [Clostridium difficile
QCD-63q42]
gi|115251671|emb|CAJ69506.1| putative RNA-binding cell division protein [Clostridium difficile
630]
Length = 261
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+++ A +V ++FL P +K ++ L ++K GGY +AER + + +P
Sbjct: 22 VIDKANSCIKNYDVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYERAERSTVFI-YPF 80
Query: 144 ALTSD--PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ + D + L I GNF F+ SH D+LGSILG GI REKIGDII+ +
Sbjct: 81 YMEYEDIEDTLRFLQIEGNFKFKNISHKDYLGSILGLGIKREKIGDIIIHD 131
>gi|78043754|ref|YP_360858.1| S4 domain-containing protein [Carboxydothermus hydrogenoformans
Z-2901]
gi|77995869|gb|ABB14768.1| S4 domain protein [Carboxydothermus hydrogenoformans Z-2901]
Length = 246
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 92 SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI 151
+++ +++ +DFL P + L +V GGYP AE+ R + D ++
Sbjct: 15 AAKGQIVLTDFLDPAAASLTRDLLRNYPEVNYKVDGGYPNAEKVRFAFYPIYVFPEDVEL 74
Query: 152 -VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFLCSGC 200
+ + ITGNF FQ +H DFLG+ILGTGI REK+GD+IL + +GC
Sbjct: 75 NLGFIEITGNFKFQAVTHRDFLGAILGTGIKREKVGDLIL-----IPNGC 119
>gi|332708244|ref|ZP_08428226.1| hypothetical protein LYNGBM3L_16620 [Moorea producens 3L]
gi|332352968|gb|EGJ32526.1| hypothetical protein LYNGBM3L_16620 [Moorea producens 3L]
Length = 219
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 69/127 (54%), Gaps = 5/127 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LLK V ++ E+V +++ A +A EV+ +DFL+PPVL E ++L +V+ +A
Sbjct: 5 EELLKSVENR---EDVARVIDQADQAIKTWEVVLTDFLSPPVLVEVAQQFQRLTEVQLLA 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGI-ARE 183
GGYPQAER RL + E + V L I GNF F + FLG G I ARE
Sbjct: 62 WGGYPQAERQRLGIAREELPLDQSQVEVVGLDIAGNFLFDTATPPGFLGRNSGNWIGARE 121
Query: 184 KIGDIIL 190
G L
Sbjct: 122 DWGHYCL 128
>gi|385799637|ref|YP_005836041.1| RNA-binding S4 domain-containing protein [Halanaerobium praevalens
DSM 2228]
gi|309389001|gb|ADO76881.1| RNA-binding S4 domain protein [Halanaerobium praevalens DSM 2228]
Length = 262
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
HIL+ + + SDFL P +K ++ +E+LAD+ +GGY AER RL V P
Sbjct: 22 HILDKCAQVLKYHKTQASDFLNPYQMKIAIPLVEQLADINFKKEGGYQAAERKRLVV-FP 80
Query: 143 EALTSDPDIVAA----LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
E L PD+V + GNF FQ SH DFLG+++G G+ R+ IGD+++
Sbjct: 81 EYLF--PDLVEKQIKIYQLAGNFAFQKLSHRDFLGALMGLGLKRKLIGDLLV 130
>gi|423081295|ref|ZP_17069903.1| S4 domain protein [Clostridium difficile 002-P50-2011]
gi|423084646|ref|ZP_17073146.1| S4 domain protein [Clostridium difficile 050-P50-2011]
gi|357550961|gb|EHJ32765.1| S4 domain protein [Clostridium difficile 002-P50-2011]
gi|357552216|gb|EHJ33991.1| S4 domain protein [Clostridium difficile 050-P50-2011]
Length = 261
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+++ A +V ++FL P +K ++ L ++K GGY QAER + + +P
Sbjct: 22 VIDKANSCIKNYDVKSTEFLNPYEVKNAVAILNSTNEIKYSVDGGYEQAERSTVFI-YPF 80
Query: 144 ALTSD--PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ + D + L I GNF F+ SH D+LGSIL GI REKIGDII+ +
Sbjct: 81 YMEYEDIEDTLRFLQIEGNFKFKNISHKDYLGSILSLGIKREKIGDIIIHD 131
>gi|22299704|ref|NP_682951.1| hypothetical protein tlr2161 [Thermosynechococcus elongatus BP-1]
gi|22295888|dbj|BAC09713.1| tlr2161 [Thermosynechococcus elongatus BP-1]
Length = 243
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALTSDPDIVAAL 155
V+H+ FL P + E++ LE+ ADV +A GGYPQAERCRL++ E L +A
Sbjct: 17 VVHTLFLPPDRVVEALGVLEQRADVHGLAWGGYPQAERCRLAIAPVELPLEGQQPPLALG 76
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
ITGNF F P ++ DF G+I G+ GD+IL
Sbjct: 77 RITGNFLFDPATYSDFEGAIASVGLDEGDYGDVIL 111
>gi|312143929|ref|YP_003995375.1| RNA-binding S4 domain-containing protein [Halanaerobium
hydrogeniformans]
gi|311904580|gb|ADQ15021.1| RNA-binding S4 domain protein [Halanaerobium hydrogeniformans]
Length = 262
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
HIL+ + R + SDFL P K + +++++D+ +GGY AER RL + P
Sbjct: 22 HILDKSERVLKYHKTEASDFLNPYQQKIAEGIVKQISDINFKFEGGYKAAERKRLLI-FP 80
Query: 143 EALTSDPDIV----AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGF 195
E L PD+V A I GNF FQ +H DFLG+++G G+ R+ IGDI++ + GF
Sbjct: 81 EYLF--PDLVESQIAIFKIKGNFSFQNLTHRDFLGAVMGLGLQRKVIGDILIHS-GF 134
>gi|427711215|ref|YP_007059839.1| photosystem II S4 domain-containing protein [Synechococcus sp. PCC
6312]
gi|427375344|gb|AFY59296.1| photosystem II S4 domain protein [Synechococcus sp. PCC 6312]
Length = 258
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
+ +K IL + +A EV+ +DFL P V E++ AL +L D+ A GGYPQAER R+
Sbjct: 15 QALKQILNQSEQAFKTWEVVVTDFLDPLVRLEAIAALNQLTDLHYQAWGGYPQAERQRMV 74
Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ + +I + +I GNF F P + DF +++ GI ++IGDIIL
Sbjct: 75 LARTDIPLDQSNIGLELWAIAGNFLFDPPTDTDFHQALIMAGIPTDQIGDIIL 127
>gi|302391658|ref|YP_003827478.1| RNA-binding S4 domain-containing protein [Acetohalobium arabaticum
DSM 5501]
gi|302203735|gb|ADL12413.1| RNA-binding S4 domain protein [Acetohalobium arabaticum DSM 5501]
Length = 264
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 7/132 (5%)
Query: 64 NFDDLLKGVGDKNAIEEVK--HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADV 121
N + L+ + K+ EE+ +L+ AR A + E ++FL P + L+++ D+
Sbjct: 3 NREKFLRYIKAKDEEEELTAAKVLDKAREALQKHEPTFTNFLNPYQRELLTSILDQIYDL 62
Query: 122 KAVAQGGYPQAERCRLSV---GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT 178
K + GG+ +AER R+ + + + +P + I+GNF F SH DFLG+ILGT
Sbjct: 63 KYLLYGGFERAERKRIGLMPDYYMREIVDNP--LTIFEISGNFNFASVSHRDFLGAILGT 120
Query: 179 GIAREKIGDIIL 190
GI RE +GD+I+
Sbjct: 121 GIKREVVGDLIV 132
>gi|158320443|ref|YP_001512950.1| RNA-binding S4 domain-containing protein [Alkaliphilus oremlandii
OhILAs]
gi|158140642|gb|ABW18954.1| RNA-binding S4 domain protein [Alkaliphilus oremlandii OhILAs]
Length = 262
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 10/131 (7%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
D ++ +G KN + + IL+ S + E+ +DFL P + + L + D++ V
Sbjct: 9 DHIQDLGLKNTMLK---ILDRVEAVSKKHEIKTTDFLNPQEIVMACEILHTVRDIQYVVS 65
Query: 127 GGYPQAERCRLSVGHPEAL----TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGY +AER +++ PE L P +A I G F+ +H D+LG+ILG G+ R
Sbjct: 66 GGYDEAERKLITI-FPEYLEGYGVEIP--IAVFEIKGTSQFEKLNHRDYLGAILGLGLKR 122
Query: 183 EKIGDIILQNK 193
EKIGDII+ N+
Sbjct: 123 EKIGDIIVHNE 133
>gi|251797860|ref|YP_003012591.1| RNA-binding S4 domain-containing protein [Paenibacillus sp. JDR-2]
gi|247545486|gb|ACT02505.1| RNA-binding S4 domain protein [Paenibacillus sp. JDR-2]
Length = 257
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 5/110 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V LE R++ E+ +DFL P + M + DV+ GGYP+AERCR +G
Sbjct: 17 VDRALEWVERSAQLHELKRTDFLDPRQAQILQMLANRNPDVQLRLAGGYPEAERCRAIIG 76
Query: 141 HPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
PE L +P ++ L++TG G HGD+LG++LG G+ R++IGDI
Sbjct: 77 -PEYRYLDDEPIGLSVLAVTG--GGSELDHGDYLGALLGLGVKRDRIGDI 123
>gi|414154543|ref|ZP_11410861.1| RNA-binding S4 domain protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
gi|411453940|emb|CCO08765.1| RNA-binding S4 domain protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
Length = 263
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
LL + D+ + +L+ A + L ++F P + LE++ D++ G
Sbjct: 8 LLGSIRDQEEKVVIAKVLDDAEKVLKNHRPLLTNFYDPYHTGLIISVLERIPDLEFGTNG 67
Query: 128 GYPQAERCRLSVGHPEALTS---DPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GYP AER R+++ P+ L D D V L++ GNF +H DFLGS+LG GI RE
Sbjct: 68 GYPAAERVRIAI-FPDYLDENEIDYDTVV-LAVEGNFKMVQVTHRDFLGSVLGLGIKREM 125
Query: 185 IGDIILQNKG 194
+GD+++ N G
Sbjct: 126 VGDLLVTNNG 135
>gi|210622350|ref|ZP_03293119.1| hypothetical protein CLOHIR_01067 [Clostridium hiranonis DSM 13275]
gi|210154338|gb|EEA85344.1| hypothetical protein CLOHIR_01067 [Clostridium hiranonis DSM 13275]
Length = 261
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 60/98 (61%), Gaps = 5/98 (5%)
Query: 96 EVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI---V 152
E ++F+ P +K +M + +D+K + GGY AER LS+ +P + + DI +
Sbjct: 34 EAKSTEFMNPFEVKNAMDIINSESDLKYHSDGGYEGAERSVLSI-YPFYMEYE-DIEQPI 91
Query: 153 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ I GNF F+ SH D+LGS+LG GI REKIGDI++
Sbjct: 92 KFIQIDGNFKFRSVSHKDYLGSLLGLGIKREKIGDILI 129
>gi|299144086|ref|ZP_07037166.1| putative YlmH protein [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518571|gb|EFI42310.1| putative YlmH protein [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 257
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
D++ + E++ +++ +++R + +DFL P K + L K D+ GGY +E
Sbjct: 15 DEDKLFEIRKVIDKIEISANRHSIQSTDFLDPYERKIVISILNKFDDISYSIDGGYSNSE 74
Query: 134 RCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
R + + D D V LS NF F +H D LGSIL GI R K+GDI+ +
Sbjct: 75 RAVIYIFPNYMYDIDFDDVEVLSFKNNFEF---THKDVLGSILSLGIDRRKVGDIVFNSN 131
Query: 194 G---FLCSGCLQY 203
F+ S +Y
Sbjct: 132 YCHIFVKSEIFKY 144
>gi|296133619|ref|YP_003640866.1| RNA-binding S4 domain-containing protein [Thermincola potens JR]
gi|296032197|gb|ADG82965.1| RNA-binding S4 domain protein [Thermincola potens JR]
Length = 260
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 9/117 (7%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRLSV 139
I++ A+ A + + SDFL P + +MA + ++ + + GGY AER R+ +
Sbjct: 20 KIIDKAQSALKIYQPVFSDFLDPG---QQVMAKKLVSGIYGLTWKFDGGYDSAERKRMII 76
Query: 140 GHPEALT--SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
PE L+ P+ + L + GNF F+ +H DFLG++L TGI REK+GDII+ + G
Sbjct: 77 -FPEDLSWGEIPECICCLQVAGNFRFRKATHRDFLGAVLNTGIRREKLGDIIVVDDG 132
>gi|150390561|ref|YP_001320610.1| RNA-binding S4 domain-containing protein [Alkaliphilus
metalliredigens QYMF]
gi|149950423|gb|ABR48951.1| RNA-binding S4 domain protein [Alkaliphilus metalliredigens QYMF]
Length = 262
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
Query: 64 NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
N D ++ + D+ +L+ + EV +++FLTP +K + L ++
Sbjct: 3 NRDQYIEHIQDEKLKLVAVKLLDKVEMVMRKHEVKYTNFLTPYEIKHMLAILNTFEEICF 62
Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
A GG+ AER L + SD + +AA+ I + F H DFLG+ILG GI R
Sbjct: 63 FAIGGHEDAERKTLVIFQAYLDPSDIESPIAAIEIQSSTRFNQLMHRDFLGAILGLGIKR 122
Query: 183 EKIGDIILQN 192
EKIGDI+LQ+
Sbjct: 123 EKIGDILLQD 132
>gi|429727341|ref|ZP_19262115.1| S4 domain protein [Peptostreptococcus anaerobius VPI 4330]
gi|429152793|gb|EKX95603.1| S4 domain protein [Peptostreptococcus anaerobius VPI 4330]
Length = 260
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 79 EEVKHILEMARRASSRREVLHS------DFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
EE+K ++M R S VL S +FL P +K ++ L D+K +GGY A
Sbjct: 13 EELK--VKMYRVIDSCNSVLKSHSIRTTEFLNPYEVKNAVAILNTEPDLKYKLEGGYDGA 70
Query: 133 ERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
R + + S+ + ++GNF F+ SH D+LGSILG GI REK+GDI++
Sbjct: 71 IRSVMLISQYYCDLSEESSIRCFQVSGNFKFKSVSHRDYLGSILGLGIKREKLGDILV 128
>gi|289423170|ref|ZP_06424985.1| RNA-binding S4 domain protein [Peptostreptococcus anaerobius 653-L]
gi|289156501|gb|EFD05151.1| RNA-binding S4 domain protein [Peptostreptococcus anaerobius 653-L]
Length = 260
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 79 EEVKHILEMARRASSRREVLHS------DFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
EE+K ++M R S VL S +FL P +K ++ L D+K +GGY A
Sbjct: 13 EELK--VKMYRVIDSCNSVLKSHSIRSTEFLNPYEVKNAVAILNTEPDLKYKLEGGYDGA 70
Query: 133 ERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
R + + S+ + ++GNF F+ SH D+LGSILG GI REK+GDI++
Sbjct: 71 IRSVMLISQYYCDLSEESSIRCFQVSGNFKFKSVSHRDYLGSILGLGIKREKLGDILV 128
>gi|421860332|ref|ZP_16292463.1| uncharacterized conserved protein [Paenibacillus popilliae ATCC
14706]
gi|410830080|dbj|GAC42900.1| uncharacterized conserved protein [Paenibacillus popilliae ATCC
14706]
Length = 262
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V E RRAS EV +DFL P + + + DV+ GG+ QAER R V
Sbjct: 19 VDRAWEWVRRASEGHEVKRTDFLDPRQAYITATLVNRCRDVQLRLDGGFAQAERKRALVA 78
Query: 141 HPEALTSDPDI-VAALSITG-NFGFQPCSHGDFLGSILGTGIAREKIGDI 188
D+ ++ L IT + + HGDFLG++LG GI REKIGDI
Sbjct: 79 PDYVYAEGEDVGISVLQITAPDRKWDELEHGDFLGALLGLGIKREKIGDI 128
>gi|323702137|ref|ZP_08113804.1| RNA-binding S4 domain protein [Desulfotomaculum nigrificans DSM
574]
gi|333924457|ref|YP_004498037.1| RNA-binding S4 domain-containing protein [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|323532824|gb|EGB22696.1| RNA-binding S4 domain protein [Desulfotomaculum nigrificans DSM
574]
gi|333750018|gb|AEF95125.1| RNA-binding S4 domain protein [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 263
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITGNFGFQPCSHGDFL 172
LE++ D+ GGYP AER R+++ P+ L SD + + L++ GNF +H DFL
Sbjct: 55 LERIPDLDFATGGGYPAAERVRVAI-FPDYLDASDINFDLMLLAVEGNFKMVKVTHRDFL 113
Query: 173 GSILGTGIAREKIGDIILQNKG 194
GSILG GI RE IGD+I+ KG
Sbjct: 114 GSILGLGIKREMIGDVIVTEKG 135
>gi|111075038|gb|ABH04885.1| uncharacterized conserved protein ylmH [Heliobacillus mobilis]
Length = 263
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 69/121 (57%), Gaps = 11/121 (9%)
Query: 79 EEVKHILEMAR--RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCR 136
E++ I+++A R SS+++V +DFL P +LK +M L L DV + GGYP+AER R
Sbjct: 19 EKMARIIDLAELCRRSSKQQV--TDFLEPFLLKTAMDILRGLDDVSVLDDGGYPEAERKR 76
Query: 137 LSV--GHPEALTSDPDIVAALSITGNFG-FQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
L + G E PD + + G H D+LGS+LG GI REK+GD+ L K
Sbjct: 77 LVLLPGEWEL----PDSRSCWLMGEVRGEVDKIGHRDYLGSLLGLGIRREKMGDLKLTKK 132
Query: 194 G 194
G
Sbjct: 133 G 133
>gi|449017158|dbj|BAM80560.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 340
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 16/140 (11%)
Query: 66 DDLLKGVGDKNAIEEVK-HILEMARRASSRREVLHSDF-LTPPVLKESMMALEKLADVKA 123
D +LK + EEV ++++A +A+ +V+ +DF L P L ALE LA V
Sbjct: 69 DKVLKTLQTVQVAEEVAVRLVDLAIKATKNYQVVATDFFLRPNELHGMKQALESLAFVGV 128
Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI------------VAALSITGNFGFQPCSHGDF 171
+ GGY AER +++ +P+ P+ + AL + GNF F SH DF
Sbjct: 129 TSSGGYAAAER-QIAAFYPKDFAPTPEQEQQVATTHCESQLLALELAGNFIFDRASHSDF 187
Query: 172 LGSILG-TGIAREKIGDIIL 190
LG+++G +G+ RE+ GDII+
Sbjct: 188 LGALIGCSGLRRERFGDIII 207
>gi|307244150|ref|ZP_07526268.1| S4 domain protein [Peptostreptococcus stomatis DSM 17678]
gi|306492521|gb|EFM64556.1| S4 domain protein [Peptostreptococcus stomatis DSM 17678]
Length = 261
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
++++ S+ + +++FL P ++ ++ + D++ +GGY AER + +
Sbjct: 22 LVDICNSVSNSYSLRNTEFLNPYEIRNAISIINYDKDLEYTIEGGYEDAERAVIFIYPDY 81
Query: 144 ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ + D+ + L I GNF F SH D+LGS++ GI REKIGDI++ +
Sbjct: 82 YILEEGDLTLTYLEIRGNFKFTTVSHRDYLGSLMSLGIKREKIGDILVHD 131
>gi|220931768|ref|YP_002508676.1| RNA-binding S4 domain-containing protein [Halothermothrix orenii H
168]
gi|219993078|gb|ACL69681.1| RNA-binding S4 domain protein [Halothermothrix orenii H 168]
Length = 262
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 7/112 (6%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-- 140
IL+ R+ + ++FL P + ++++ D+ GGY +AER R+++
Sbjct: 22 QILDKIEIVVKRKSEVSTNFLNPHEQSIAEGLIKQVYDINYKIDGGYDRAERKRVTLFPD 81
Query: 141 --HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+PE + + V L + GNF F SH DFLG+ILG GI RE IGDI++
Sbjct: 82 YLYPEHVKTP---VCILKVEGNFKFNSVSHRDFLGAILGLGIKREMIGDILI 130
>gi|374602415|ref|ZP_09675408.1| hypothetical protein PDENDC454_05666 [Paenibacillus dendritiformis
C454]
gi|374392017|gb|EHQ63346.1| hypothetical protein PDENDC454_05666 [Paenibacillus dendritiformis
C454]
Length = 262
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E V E RRAS EV +DFL P + + + +DV+ GG QAER R
Sbjct: 17 EFVDRAWEWVRRASEGHEVKRTDFLDPRQAYIAATLVNRSSDVQLRLDGGSEQAERKRAL 76
Query: 139 VGHPEALTSDPDI--VAALSITG-NFGFQPCSHGDFLGSILGTGIAREKIGDI 188
+ P+ + +D + ++ L IT + + HGDFLG++LG GI REKIGDI
Sbjct: 77 IA-PDYVYADGEDMGISVLQITSPDRKWDELEHGDFLGALLGLGIKREKIGDI 128
>gi|407474154|ref|YP_006788554.1| RNA-binding S4 domain-containing protein [Clostridium acidurici 9a]
gi|407050662|gb|AFS78707.1| putative RNA-binding S4 domain-containing protein [Clostridium
acidurici 9a]
Length = 262
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
++ IL+ +V ++DFL P K S L +L DV +GG +ER + +
Sbjct: 21 MRKILDKIESVLRHHDVEYTDFLDPYQRKLSHSILNRL-DVSYYEEGGLEDSERKSIII- 78
Query: 141 HPEALTSD--PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
PE ++ + + + A+ I GNF F H D+LG+ILG GI REK+GDI
Sbjct: 79 FPEYMSKENIENPIKAIKIEGNFKFTNLRHKDYLGAILGLGIKREKVGDI 128
>gi|226313407|ref|YP_002773301.1| hypothetical protein BBR47_38200 [Brevibacillus brevis NBRC 100599]
gi|226096355|dbj|BAH44797.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 257
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V+ LEM + ++ + +DF+ P L ++ DVK GGY AER R+ +
Sbjct: 15 VERALEMLTQVERKQAMRLTDFVDPRQLLIFQSLSSQVTDVKVSPYGGYEGAERVRIII- 73
Query: 141 HPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG---- 194
HPE L +PD + L+I + F H D +G++LG G+ REK GD++ + G
Sbjct: 74 HPEYLPVEPDDYRLTLLAIKADQRFHVLEHRDVMGAMLGVGMKREKFGDMLTDSAGSYAI 133
Query: 195 -------FLCSGCLQ 202
F+C+ Q
Sbjct: 134 VAEEVADFVCAQVTQ 148
>gi|134298583|ref|YP_001112079.1| RNA-binding S4 domain-containing protein [Desulfotomaculum reducens
MI-1]
gi|134051283|gb|ABO49254.1| RNA-binding S4 domain protein [Desulfotomaculum reducens MI-1]
Length = 255
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 115 LEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFL 172
LE++ D+ + GGY +ER R + + E D +I L++ GNF +H DFL
Sbjct: 47 LERIQDIDFASYGGYDLSERVRTVIFPDYLEGEVFDYEI-TLLAVEGNFKMVKVNHRDFL 105
Query: 173 GSILGTGIAREKIGDIILQNKG 194
GS+LG GI RE +GD+I+ +KG
Sbjct: 106 GSLLGLGIKREMVGDLIVSDKG 127
>gi|333978627|ref|YP_004516572.1| RNA-binding S4 domain-containing protein [Desulfotomaculum
kuznetsovii DSM 6115]
gi|333822108|gb|AEG14771.1| RNA-binding S4 domain protein [Desulfotomaculum kuznetsovii DSM
6115]
Length = 262
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 7/129 (5%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
LL ++ E + + ++ ++ R+ +DFL P +MALE++ D+ A + G
Sbjct: 7 LLYRAKTQDEKEMLSRVYDLVQQVLRARQPRVTDFLDPYHAGLVLMALERVPDLAARSDG 66
Query: 128 GYPQAERCRLSVGHPEALTSDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GYP AER R+ + +P+ L DP +A LSI G+F Q SH DFLG++L G+ RE
Sbjct: 67 GYPGAERVRILI-YPDYL--DPREEDWQLAFLSIQGSFEEQEPSHRDFLGALLALGLRRE 123
Query: 184 KIGDIILQN 192
KIGDI+L N
Sbjct: 124 KIGDILLHN 132
>gi|345017880|ref|YP_004820233.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344033223|gb|AEM78949.1| RNA-binding S4 domain protein [Thermoanaerobacter wiegelii Rt8.B1]
Length = 248
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 24/129 (18%)
Query: 65 FDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVK 122
F+D++KGV S+R V ++DFL+ K E + + D+
Sbjct: 11 FEDIIKGV------------------LKSKR-VKYTDFLSLSEQKIFEKTILKYRQQDIN 51
Query: 123 AVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGYP AER ++++ +P+ L + + A+ I GNF SH D LGS+LG GI R
Sbjct: 52 YNLDGGYPLAER-KIAIIYPDFLQPEDTPICAVRIEGNFS--KLSHRDVLGSLLGLGIKR 108
Query: 183 EKIGDIILQ 191
+KIGDII++
Sbjct: 109 QKIGDIIVK 117
>gi|167037285|ref|YP_001664863.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040520|ref|YP_001663505.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter sp.
X514]
gi|256751718|ref|ZP_05492592.1| RNA-binding S4 domain protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914567|ref|ZP_07131883.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X561]
gi|307724197|ref|YP_003903948.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter sp.
X513]
gi|320115701|ref|YP_004185860.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|326389981|ref|ZP_08211544.1| RNA-binding S4 domain protein [Thermoanaerobacter ethanolicus JW
200]
gi|392940765|ref|ZP_10306409.1| hypothetical protein ThesiDRAFT1_2100 [Thermoanaerobacter
siderophilus SR4]
gi|166854760|gb|ABY93169.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X514]
gi|166856119|gb|ABY94527.1| RNA-binding S4 domain protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256749387|gb|EEU62417.1| RNA-binding S4 domain protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889502|gb|EFK84648.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X561]
gi|307581258|gb|ADN54657.1| RNA-binding S4 domain protein [Thermoanaerobacter sp. X513]
gi|319928792|gb|ADV79477.1| RNA-binding S4 domain protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|325994041|gb|EGD52470.1| RNA-binding S4 domain protein [Thermoanaerobacter ethanolicus JW
200]
gi|392292515|gb|EIW00959.1| hypothetical protein ThesiDRAFT1_2100 [Thermoanaerobacter
siderophilus SR4]
Length = 248
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 24/130 (18%)
Query: 65 FDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVK 122
F+D++KGV S+R V ++DFL+ K E + + D+
Sbjct: 11 FEDIIKGV------------------LKSKR-VKYTDFLSLSEQKIFEKTILKYRQQDIN 51
Query: 123 AVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGYP AER ++++ +P+ L + + A+ I GNF SH D LGS+LG GI R
Sbjct: 52 YNLDGGYPLAER-KIAIIYPDFLQPEDTPICAVRIEGNFS--KLSHRDVLGSLLGLGIKR 108
Query: 183 EKIGDIILQN 192
+KIGDII++
Sbjct: 109 QKIGDIIVKE 118
>gi|297544856|ref|YP_003677158.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842631|gb|ADH61147.1| RNA-binding S4 domain protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 248
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 95 REVLHSDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 152
+ V ++DFL+P K E + + D+ +GGYP AER ++++ + + L + +
Sbjct: 22 KRVKYTDFLSPSEQKIFEKTILKYRQQDINYNLEGGYPFAER-KIAIIYFDFLQPEDTPI 80
Query: 153 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
A+ I GNF SH D LGS+LG GI R+KIGDII++
Sbjct: 81 CAVRIEGNFS--NLSHRDVLGSLLGLGIRRQKIGDIIVKE 118
>gi|33240887|ref|NP_875829.1| RNA-binding protein [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33238416|gb|AAQ00482.1| RNA-binding protein, contains S4-like domain [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 262
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 98 LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCR--LSVGHPEALTSDPDI-VAA 154
+ + FL+ PV +E +++AD+ + GGYP AER R L E +D ++ + A
Sbjct: 35 IWTSFLSAPVQEEIKNVFKEIADISYSSNGGYPNAERKRILLQRQQNETFLNDENVPIKA 94
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ I GNF F DF SI TG+ E+IGD+ +
Sbjct: 95 IKIEGNFLFDRTEPEDFRQSIAETGVKAEEIGDLWI 130
>gi|225181688|ref|ZP_03735128.1| RNA-binding S4 domain protein [Dethiobacter alkaliphilus AHT 1]
gi|225167669|gb|EEG76480.1| RNA-binding S4 domain protein [Dethiobacter alkaliphilus AHT 1]
Length = 261
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV--AALSI 157
+DFL P + + L DVK+V GGYP+AER RL V +P +D + V A + +
Sbjct: 38 TDFLDPFQQRTADRVLHLFKDVKSVTWGGYPEAERARLLV-YPSQRQADKESVPLAFIEV 96
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ +H D+LG++LG G+ REK+GDI+L
Sbjct: 97 EAHKA-DGLTHRDYLGAVLGLGLRREKLGDILL 128
>gi|289578633|ref|YP_003477260.1| RNA-binding S4 domain-containing protein [Thermoanaerobacter
italicus Ab9]
gi|289528346|gb|ADD02698.1| RNA-binding S4 domain protein [Thermoanaerobacter italicus Ab9]
Length = 248
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 95 REVLHSDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIV 152
+ V ++DFL+P K E + + D+ GGYP AER ++++ + + L + +
Sbjct: 22 KRVKYTDFLSPSEQKIFEKTILKYRQQDINYNLDGGYPFAER-KIAIIYFDFLQPEETPI 80
Query: 153 AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
A+ I GNF SH D LGS+LG GI R+KIGDII++
Sbjct: 81 CAVRIEGNFS--NLSHRDVLGSLLGLGIRRQKIGDIIVK 117
>gi|398813824|ref|ZP_10572515.1| hypothetical protein PMI05_00924 [Brevibacillus sp. BC25]
gi|398037877|gb|EJL31054.1| hypothetical protein PMI05_00924 [Brevibacillus sp. BC25]
Length = 257
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 22/139 (15%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCR 136
V+ LEM + + + +DF+ P +M E L+ DVK GGY AER R
Sbjct: 15 VERALEMLTQVERTQAMRLTDFVDP----RQLMIFESLSSQVRDVKVSPYGGYEGAERVR 70
Query: 137 LSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ + HPE L +P+ + L+I + F H D +G++LG G+ REK GD++ + G
Sbjct: 71 III-HPEYLPVEPEDYRLTLLAIKADQRFHVLEHRDVMGAMLGVGMKREKFGDMLTDSAG 129
Query: 195 -----------FLCSGCLQ 202
F+C+ Q
Sbjct: 130 SYTIVAEEVADFVCAQVTQ 148
>gi|329922640|ref|ZP_08278192.1| S4 domain protein [Paenibacillus sp. HGF5]
gi|328941982|gb|EGG38265.1| S4 domain protein [Paenibacillus sp. HGF5]
Length = 261
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 75 KNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYP 130
K+ E V E A E +DFL P LE L DV AV GG+
Sbjct: 12 KDEREFVDRAWEWVVNAGQYHETKLTDFLDP----RQRFILESLVNRHPDVHAVFDGGHA 67
Query: 131 QAERCRLSVG-HPEALTSDPDIVAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
AER R + AL + ++ LSI+ G+ F HGD++GSILG GI R KIGDI
Sbjct: 68 DAERVRAMIAPDYRALEGEDLMMKVLSISSGDQKFLELEHGDYMGSILGLGIKRSKIGDI 127
Query: 189 ILQNKGFLCSGC 200
+ L GC
Sbjct: 128 HV-----LADGC 134
>gi|452992508|emb|CCQ96039.1| RNA-binding S4 domain protein [Clostridium ultunense Esp]
Length = 264
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
D LL + DK I ++ +L+ +R + +DF+ P + + L + D+
Sbjct: 9 DSLLNHIVDKEQILNMRRVLDQIEIVMNRHTIGITDFMDPYERRLAQSILNRFIDISYKE 68
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GG +AER + + +PE DI + +L I GN SH DFLG IL GI R
Sbjct: 69 LGGIDEAERKVIMI-YPEYFQY-QDIESPIRSLMIEGNIS--KLSHRDFLGGILNLGINR 124
Query: 183 EKIGDIIL 190
EKIGDI++
Sbjct: 125 EKIGDILI 132
>gi|339009200|ref|ZP_08641772.1| hypothetical protein BRLA_c30190 [Brevibacillus laterosporus LMG
15441]
gi|421873603|ref|ZP_16305215.1| S4 domain protein [Brevibacillus laterosporus GI-9]
gi|338773678|gb|EGP33209.1| hypothetical protein BRLA_c30190 [Brevibacillus laterosporus LMG
15441]
gi|372457390|emb|CCF14764.1| S4 domain protein [Brevibacillus laterosporus GI-9]
Length = 257
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V+ LEM R R+ + +DFL P L ++ DV+ A GGY AER R ++
Sbjct: 15 VERALEMLRLVDERQIIRLTDFLDPRQLFILQSLTSQVQDVRVSASGGYDGAERVR-ALL 73
Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
HP + D D + I GN F H D +G++L GI REK GDI++
Sbjct: 74 HPSYIVPEDVDFGLRLFEIKGNQRFIAWEHRDVMGALLHVGIKREKFGDILVSE 127
>gi|20808026|ref|NP_623197.1| hypothetical protein TTE1597 [Thermoanaerobacter tengcongensis MB4]
gi|20516604|gb|AAM24801.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
MB4]
Length = 248
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 61/98 (62%), Gaps = 8/98 (8%)
Query: 99 HSDFLTPPVLKE-SMMALE-KLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAA 154
++DFLT K+ +AL+ K VK + +GGYP AER ++++ +P+ LT + + A
Sbjct: 25 YTDFLTLSEQKQFEKLALKYKSEGVKYLLEGGYPSAER-KIAIVYPDFLTFREEELPIVA 83
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
L + G F SH + LGSILG GI REK+GDII++
Sbjct: 84 LRVEGKNRF---SHREVLGSILGLGIKREKVGDIIVKE 118
>gi|412992974|emb|CCO16507.1| RNA-binding S4 [Bathycoccus prasinos]
Length = 340
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 24/138 (17%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCR 136
++V LE A+RA +DF +PP+ A++K V GG+ AE+ R
Sbjct: 69 KDVTRALEQAKRAEKVWSCEITDFYSPPLCDWIEAAVKKNFGEAIVCNRFGGFSGAEQQR 128
Query: 137 LSVGH-------------PEALTSDPD---------IVAALSITGNFGFQPCSHGDFLGS 174
+ + E ++ D +A ++I+G F F P SH DFLG+
Sbjct: 129 VLLARRDNSEELFELAKKDEFFANEEDEGEVDTNNCAIACVNISGKFAFDPASHPDFLGA 188
Query: 175 ILGTGIAREKIGDIILQN 192
+L G+ REKIGDI++ N
Sbjct: 189 VLNAGVKREKIGDILVNN 206
>gi|188585944|ref|YP_001917489.1| RNA-binding S4 domain-containing protein [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350631|gb|ACB84901.1| RNA-binding S4 domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 265
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
+DF P L + + +DV A+ GG AER ++ + P+ PD + L +
Sbjct: 40 TDFFDPHQLTIAEKVINTFSDVSALFYGGLADAERKKVGI-FPKEWNVTPDQLGIEVLEL 98
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
GNF F SH D LG+++G G+ R+KIGDI
Sbjct: 99 RGNFRFSSISHRDVLGAVMGLGLKRDKIGDI 129
>gi|433545426|ref|ZP_20501780.1| hypothetical protein D478_17089 [Brevibacillus agri BAB-2500]
gi|432183249|gb|ELK40796.1| hypothetical protein D478_17089 [Brevibacillus agri BAB-2500]
Length = 257
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 71 GVGDKNAIEE---VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
V D A EE V+ LEM A ++ + +DF+ P ++ DVK A G
Sbjct: 2 SVFDHFAKEERPFVERALEMLTLAERKQAMRLTDFVDPRQWHIMKSLTSQVRDVKISASG 61
Query: 128 GYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GY AER R+ + HPE + +P+ +A L+I + F H D +G++L G+ REK
Sbjct: 62 GYEGAERVRVLI-HPEYIEVEPEDFRLALLAIKADQRFHTLEHRDVMGALLHAGMKREKF 120
Query: 186 GDII 189
GD++
Sbjct: 121 GDML 124
>gi|87301211|ref|ZP_01084052.1| RNA-binding S4 [Synechococcus sp. WH 5701]
gi|87284179|gb|EAQ76132.1| RNA-binding S4 [Synechococcus sp. WH 5701]
Length = 264
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLL+G D A+E ++ +A A + S FL+ +E+M L L+++ A+
Sbjct: 9 DLLRGSRDPAALEP---LIVLADHALRDWQPHWSGFLSALAWEEAMERLGSLSELHLEAE 65
Query: 127 GGYPQAERCRLSVGHPE-ALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GG PQAERCRL + + A S P +A L ++GNF F P GD +L G
Sbjct: 66 GGRPQAERCRLLLQRRDLAAGSTPPTAPLAGLEVSGNFLFDPAEPGDVRAGLLAAGALDG 125
Query: 184 KIGDIILQ 191
++GD+ L+
Sbjct: 126 ELGDLWLR 133
>gi|347542604|ref|YP_004857241.1| S4 domain-containing protein [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985640|dbj|BAK81315.1| S4 domain protein [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 258
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 71/132 (53%), Gaps = 11/132 (8%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRA-SSRREVLHSDFLTPPV--LKESMMALEKLADVK 122
+D +K G N+IE+ + + A S + ++ ++F T V + +S ++ ++L
Sbjct: 5 NDFIKSCG--NSIEDANKLFSLYVSALKSGKTMITNEFYTVNVCNVLKSFLSTKEL---N 59
Query: 123 AVAQGGYPQAERCRL--SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
+ G AERC + S+G + D D+ L I+ N F SH DFLGSI+ G
Sbjct: 60 VLCYGFVDDAERCLIAFSIGEIDLSIFD-DVAKVLKISYNDKFNKLSHRDFLGSIMSLGF 118
Query: 181 AREKIGDIILQN 192
+REK+GD++++N
Sbjct: 119 SREKMGDLVIEN 130
>gi|291563464|emb|CBL42280.1| Uncharacterized conserved protein, contains S4-like domain
[butyrate-producing bacterium SS3/4]
Length = 251
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 82 KHILEMARRASSRREVLHSDFLT--PPVLKESMMALEKLADVKAVAQGGYPQAER---CR 136
K I E+A A SR LH+DFLT + ++M A L VK V GG+P +ER C
Sbjct: 10 KRIQELAENAYSRDIPLHTDFLTLAEQTVFQNMSA--TLPPVKFVLSGGFPMSERKVLCF 67
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
L+ + E L + P + + + +H D+LG+I+ GI R IGDI+LQ+
Sbjct: 68 LA-SYEEELYAPPFVCLKIVPANRRFAEELTHRDYLGAIMNLGIERAMIGDIVLQD 122
>gi|304404028|ref|ZP_07385690.1| RNA-binding S4 domain protein [Paenibacillus curdlanolyticus YK9]
gi|304347006|gb|EFM12838.1| RNA-binding S4 domain protein [Paenibacillus curdlanolyticus YK9]
Length = 262
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V + E R S R E +D+L P + + +V GGY +AER R +
Sbjct: 19 VVKVEEWIERCSERHEWKRTDYLDPRQAEIVRALASRNGEVAIRFDGGYEEAERQRAVIA 78
Query: 141 HPEALTSD-PDIVAALSITGNF-GFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFLC 197
A+ D P V A+++T + G HGD+LG++LG G+ RE IGDI + G C
Sbjct: 79 PDYAVLDDEPMGVQAIAVTADSQGHLDLDHGDYLGALLGLGVKRELIGDIHVHEDGCHC 137
>gi|334341816|ref|YP_004546796.1| RNA-binding S4 domain-containing protein [Desulfotomaculum ruminis
DSM 2154]
gi|334093170|gb|AEG61510.1| RNA-binding S4 domain-containing protein [Desulfotomaculum ruminis
DSM 2154]
Length = 262
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITGNFGFQPCSHGDFL 172
LE++ + A GGYP AER R+++ P+ L S + + L++ GNF +H DFL
Sbjct: 55 LERIPGLDFAAGGGYPTAERVRIAL-FPDYLDESQVNFELVLLAVEGNFKMVKTTHRDFL 113
Query: 173 GSILGTGIAREKIGDIILQNKG 194
GSIL GI RE IGDI++ +G
Sbjct: 114 GSILSLGIKRELIGDILITPRG 135
>gi|403386619|ref|ZP_10928676.1| RNA-binding protein [Clostridium sp. JC122]
Length = 258
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 91 ASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD 150
A +V++S F + + ++EK D K G + + ER +S+ E + P
Sbjct: 29 AEKTNKVVYSRFFIYKGIYNKLKSMEKSIDAKIYCNGIFDECERVMISISSYEIPSYYP- 87
Query: 151 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ L I F+ SH D+LGSI+ GI RE +GD+I+Q+
Sbjct: 88 -MVLLKIVNKSKFKNLSHKDYLGSIMAQGIKRELLGDLIVQD 128
>gi|334133974|ref|ZP_08507509.1| S4 domain protein [Paenibacillus sp. HGF7]
gi|333608482|gb|EGL19779.1| S4 domain protein [Paenibacillus sp. HGF7]
Length = 259
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 92 SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI 151
++ +V +DFL P + + DV GGYP AER R +G S D+
Sbjct: 27 AAHHKVKRTDFLDPRQAFILRTLVNRNPDVNCRLDGGYPDAERQRAILGPDYLDLSGEDM 86
Query: 152 -VAALSI-TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ LS+ +G+ FQ SHGD++G+IL G+ R+K+GDI + +G
Sbjct: 87 GLRVLSVESGDSKFQALSHGDYMGAILALGMKRDKVGDINVSEQG 131
>gi|399052164|ref|ZP_10741729.1| hypothetical protein PMI08_03282 [Brevibacillus sp. CF112]
gi|398050030|gb|EJL42420.1| hypothetical protein PMI08_03282 [Brevibacillus sp. CF112]
Length = 257
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 71 GVGDKNAIEE---VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
V D A EE V+ LEM ++ + +DF+ P ++ DVK A G
Sbjct: 2 SVFDHFAKEERPFVERALEMLTLVERKQAMRLTDFVDPRQWHIMKSLTSQVRDVKISASG 61
Query: 128 GYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GY AER R+ + HPE + +P+ +A L+I + F H D +G++L G+ REK
Sbjct: 62 GYEGAERVRVLI-HPEYIEVEPEDFRLALLAIKADQRFHTLEHRDVMGALLHAGMKREKF 120
Query: 186 GDII 189
GD++
Sbjct: 121 GDML 124
>gi|87123642|ref|ZP_01079492.1| hypothetical protein RS9917_08541 [Synechococcus sp. RS9917]
gi|86168211|gb|EAQ69468.1| hypothetical protein RS9917_08541 [Synechococcus sp. RS9917]
Length = 264
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LL+G + E+++ +L+ A + S FL P+ +E+ L ++ +
Sbjct: 6 ELLQGARHR---EDLERLLDQAEAVLRTWQPQWSPFLEAPLQEEAFDRFSSLTELSWQRE 62
Query: 127 GGYPQAERCRLSVGH------PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
GGYP AERCRL P + T +P + L++ GNF F P D ++ G
Sbjct: 63 GGYPGAERCRLLCQRRDPDLDPSSETQEPAPIVGLTVEGNFLFDPIVPADIRRALAPLGA 122
Query: 181 AREKIGDIILQ-NKG--FLCS 198
A E++GD+ ++ ++G LC+
Sbjct: 123 APEQLGDVWIRGDRGAQLLCT 143
>gi|258514373|ref|YP_003190595.1| RNA-binding S4 domain-containing protein [Desulfotomaculum
acetoxidans DSM 771]
gi|257778078|gb|ACV61972.1| RNA-binding S4 domain protein [Desulfotomaculum acetoxidans DSM
771]
Length = 267
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD-PDIVAALSIT 158
+DF P + +E + D+K + GGY +AER R+ + PE + P + L
Sbjct: 46 TDFYDPHRMNLIAAMIENM-DLKILLWGGYEEAERKRMLL-VPEHYKGEWPSLTGCLLAE 103
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
GNF +H D+LG++LG GI REK+GDII+
Sbjct: 104 GNFKTIEVTHRDYLGALLGLGIKREKLGDIIV 135
>gi|261405680|ref|YP_003241921.1| RNA-binding S4 domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261282143|gb|ACX64114.1| RNA-binding S4 domain protein [Paenibacillus sp. Y412MC10]
Length = 261
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 75 KNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYP 130
K+ E V E A E +DFL P LE L DV A+ GG+
Sbjct: 12 KDEREFVDRAWEWVVNAGQYHETKLTDFLDP----RQRFILESLVNRHPDVHALFDGGHA 67
Query: 131 QAERCRLSVG-HPEALTSDPDIVAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
AER R + AL + + LSI+ G+ F HGD++GSILG GI R KIGDI
Sbjct: 68 DAERVRAMIAPDYRALEGEDLKMKVLSISSGDQKFLELEHGDYMGSILGLGIKRSKIGDI 127
Query: 189 ILQNKGFLCSGC 200
+ L GC
Sbjct: 128 HV-----LADGC 134
>gi|354582307|ref|ZP_09001209.1| RNA-binding S4 domain protein [Paenibacillus lactis 154]
gi|353199706|gb|EHB65168.1| RNA-binding S4 domain protein [Paenibacillus lactis 154]
Length = 260
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAER 134
E V E A EV +DFL P LE L DV A +GGY AER
Sbjct: 15 EFVDRAWEWVANAGQYHEVKLTDFLDP----RQRFILETLVNRHPDVHAAFEGGYADAER 70
Query: 135 CRLSVG-HPEALTSDPDIVAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
R + L + + LSIT G+ HGD++GSILG GI R KIGDI +
Sbjct: 71 VRAIIAPDYRELDGEDFKIKVLSITSGDQKLLELEHGDYMGSILGLGIKRSKIGDIHV-- 128
Query: 193 KGFLCSGC 200
+ SGC
Sbjct: 129 ---IESGC 133
>gi|402815868|ref|ZP_10865460.1| putative RNA-binding protein YlmH [Paenibacillus alvei DSM 29]
gi|402506908|gb|EJW17431.1| putative RNA-binding protein YlmH [Paenibacillus alvei DSM 29]
Length = 263
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
E RA+ E+ +DFL P + + ADV+ GG+ AER R + P+ +
Sbjct: 24 EWVERAAQLHEIRRTDFLDPRQAFILTTLVNRNADVQLRLDGGHEHAERKRALIA-PDYV 82
Query: 146 TSDPDIVAA--LSITG-NFGFQPCSHGDFLGSILGTGIAREKIGDI 188
++ + + L IT + ++ HGDFLG++LG GI R+KIGDI
Sbjct: 83 YAEGEEMGMHILQITSLDRNWEQLEHGDFLGAVLGLGIKRDKIGDI 128
>gi|318042231|ref|ZP_07974187.1| hypothetical protein SCB01_11007 [Synechococcus sp. CB0101]
Length = 263
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 8/131 (6%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
D LLKG +E+ ++++A +A E SDF+ + +E+ L L++V A
Sbjct: 5 DTLLKG---SRRPQELAGLIDLAEQALRTWEPCWSDFVDAELKEEAEARLGALSEVDLWA 61
Query: 126 QGGYPQAERCRLSVGHPEA--LTSDPDIVA---ALSITGNFGFQPCSHGDFLGSILGTGI 180
GG+PQAERCRL V + L P +A L ++GNF F P D + G+
Sbjct: 62 DGGWPQAERCRLLVRRADQADLVDAPAPLAEICGLVVSGNFLFDPAEPADVREGLRQAGL 121
Query: 181 AREKIGDIILQ 191
+GD+ ++
Sbjct: 122 QDSDLGDVWMR 132
>gi|253576145|ref|ZP_04853477.1| RNA-binding S4 domain-containing protein [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844488|gb|EES72504.1| RNA-binding S4 domain-containing protein [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 261
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCR 136
V E A EV SDFL P LE LA D + GGY AER R
Sbjct: 18 VDRAWEWVVNAGDYHEVKLSDFLDP----RQCYILETLANRHPDTQIRLDGGYEGAERRR 73
Query: 137 LSVG-HPEALTSDPDIVAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ L+ +P + L IT G+ F HGD+LG+ILG G+ R+KIGDI ++ G
Sbjct: 74 ALIAPDYRDLSQEPMGLKVLDITSGDQKFLALQHGDYLGAILGLGLKRDKIGDIHVREDG 133
>gi|342214853|ref|ZP_08707524.1| S4 domain protein [Veillonella sp. oral taxon 780 str. F0422]
gi|341590384|gb|EGS33627.1| S4 domain protein [Veillonella sp. oral taxon 780 str. F0422]
Length = 261
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
EE + ++++A + + R +DF++P L + + ++ GGY AER R++
Sbjct: 18 EEARRMIDLAEQVQAGRPYRVTDFMSPAGLVIADAVKANFGGINIISSGGYEGAERLRVA 77
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
P + +A L ++ + F+ +H D LGS++G GI R GDII+ + G
Sbjct: 78 FVDPHFQGTVDLQIAVLKVSWDPRFRLLTHRDVLGSLMGLGIDRTHFGDIIVTSGG 133
>gi|430750503|ref|YP_007213411.1| hypothetical protein Theco_2302 [Thermobacillus composti KWC4]
gi|430734468|gb|AGA58413.1| hypothetical protein Theco_2302 [Thermobacillus composti KWC4]
Length = 260
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCR 136
V LE RA+ R + +DFL P L+ +A D GGYP+AER R
Sbjct: 17 VDRALEWVERAAERHAPVVTDFLDP----RQQFILQSIAGREPDAVLRLDGGYPEAERKR 72
Query: 137 LSVGHPEALTSDPD---IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
+ D D +V A+ +G F HGD+LG++LG GI R+ IGD+ +++
Sbjct: 73 AVIVPAYRDPEDVDCGIVVLAVEASGG-KFLELDHGDYLGALLGLGIKRDVIGDLHVRDD 131
Query: 194 GFLC 197
G C
Sbjct: 132 GCHC 135
>gi|357008377|ref|ZP_09073376.1| RNA-binding S4 domain-containing protein [Paenibacillus elgii B69]
Length = 260
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + DV+ GG+P AER R V + D ++ ++ + IT
Sbjct: 36 TDFLDPRQIFILTTLANRNPDVQVRFDGGHPDAERKRALVAPDYRVLDDEEMGISLIEIT 95
Query: 159 G-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ + HGDF+G+ILG GI R+KIGDI ++ G
Sbjct: 96 SEDEKLKELDHGDFMGAILGLGIKRDKIGDIYVREDG 132
>gi|315646047|ref|ZP_07899168.1| RNA-binding S4 domain protein [Paenibacillus vortex V453]
gi|315278808|gb|EFU42122.1| RNA-binding S4 domain protein [Paenibacillus vortex V453]
Length = 260
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 75 KNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYP 130
++ E V E A E +DFL P LE L DV A+ QGG+
Sbjct: 11 RDEREFVDRAWEWVVNAGQYHEAKLTDFLDP----RQRFILESLVNRHPDVHALFQGGHA 66
Query: 131 QAERCRLSVGHPEALTSDPDI-VAALSIT-GNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
AER R + D+ + LSI+ G+ F HGD++GSILG GI R KIGDI
Sbjct: 67 DAERVRALIAPDYRDLEGEDLKMKVLSISSGDQKFLELDHGDYMGSILGLGIKRSKIGDI 126
Query: 189 ILQNKG 194
+ G
Sbjct: 127 HVLEDG 132
>gi|255280915|ref|ZP_05345470.1| S4 domain protein [Bryantella formatexigens DSM 14469]
gi|255268363|gb|EET61568.1| S4 domain protein [Marvinbryantia formatexigens DSM 14469]
Length = 268
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 68/138 (49%), Gaps = 23/138 (16%)
Query: 76 NAIEEV--KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
N EE+ K +LE+A++A SR V +DFL L + L+ VK V GGY QAE
Sbjct: 2 NYEEELFQKRLLELAKKADSRNIVTFTDFLNLNELNIYHQSAGALSFVKCVGFGGYEQAE 61
Query: 134 RCRLSVGHPEAL---TSD----PDIVAALSITGNF-----GFQP--------CSHGDFLG 173
R L+ P+AL T D D AL + + +P SH DFLG
Sbjct: 62 RQILAF-IPDALCYFTEDFADRTDFSVALRQSVRYPISCLRIEPQNKKFSGSLSHRDFLG 120
Query: 174 SILGTGIAREKIGDIILQ 191
+ L TGI R IGDI+++
Sbjct: 121 AALNTGIERSTIGDILVE 138
>gi|427392306|ref|ZP_18886311.1| hypothetical protein HMPREF9698_00117 [Alloiococcus otitis ATCC
51267]
gi|425731573|gb|EKU94389.1| hypothetical protein HMPREF9698_00117 [Alloiococcus otitis ATCC
51267]
Length = 260
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 76 NAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERC 135
N + + ++ RR S + FL P + + D++ GG+P AER
Sbjct: 11 NEKDYIDLAVDWVRRVSDTYAPYLTSFLDPRQAYILATIVAQYPDLQVSYWGGHPGAERQ 70
Query: 136 RLSVGHPEALTSDP---DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
R S+ +PE L + DI A I F SHG +GSILGTGI R+K+GDII
Sbjct: 71 R-SLIYPEYLPTHELSYDI-AGFEIDYPHKFNKLSHGQIMGSILGTGIKRDKLGDII 125
>gi|403379008|ref|ZP_10921065.1| RNA-binding S4 domain-containing protein [Paenibacillus sp. JC66]
Length = 259
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V E +A R EV +DFL P + + VK GG +AER R +
Sbjct: 17 VNKAWEWIEKAEHRHEVRLTDFLDPRQAYVVSTLVNRTTQVKLHLSGGSDEAERKRAWIA 76
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
++ D + L++ + HGD++G++LG G+ R+KIGDI +Q G
Sbjct: 77 PDYLHPAETDFSMCVLAVDAGEEGRALDHGDYMGAVLGLGLKRDKIGDIHVQESG 131
>gi|116071266|ref|ZP_01468535.1| RNA-binding S4 [Synechococcus sp. BL107]
gi|116066671|gb|EAU72428.1| RNA-binding S4 [Synechococcus sp. BL107]
Length = 261
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
D+LL G D E +K ++++A + + S FL + +E++ L L+++
Sbjct: 6 DELLAGAEDP---EGLKRLIQLADQVVRTWQPAWSPFLGARLQEEALARLNNLSEIGWHR 62
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVA---ALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGYP AERCRL + H + D A L I GNF F P S D ++ G A
Sbjct: 63 DGGYPGAERCRL-LCHRRDQMGEADACAPAYGLLIEGNFLFDPLSPQDIRNALQELGAAP 121
Query: 183 EKIGDIILQ 191
++IGD+ ++
Sbjct: 122 DQIGDLWVR 130
>gi|419718759|ref|ZP_14246065.1| S4 domain protein [Lachnoanaerobaculum saburreum F0468]
gi|383305099|gb|EIC96478.1| S4 domain protein [Lachnoanaerobaculum saburreum F0468]
Length = 249
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSVGH 141
L++AR A + V HS FL M +L ++K+V GGY +AER C
Sbjct: 13 LDLARNAYFKNIVTHSTFLNLYEQTIFEMIQNELPNIKSVMFGGYSEAERKIVCFYCEKK 72
Query: 142 PEALTSDPDIVAALSIT-GNFGF-QPCSHGDFLGSILGTGIAREKIGDI 188
P D D++ +SI N F + SH DFLG+I+ GI R IGDI
Sbjct: 73 P-----DFDMLECISIAPSNKKFAEELSHRDFLGAIMNLGIERHMIGDI 116
>gi|406026563|ref|YP_006725395.1| 30S ribosomal protein S4e [Lactobacillus buchneri CD034]
gi|405125052|gb|AFR99812.1| ribosomal protein S4e [Lactobacillus buchneri CD034]
Length = 263
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 88 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT- 146
R A+ R +L +DFL P L + + V GGYP AE R +V P+
Sbjct: 26 GRVANEYRPIL-TDFLNPRQLYILETIVNRYEGVSFQTFGGYPSAELKR-AVAFPDYFVP 83
Query: 147 -SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ--NKGFLCS 198
+D + A I F SHG LGSI+G+GI R+ IGDI+ N F+C
Sbjct: 84 KADDYNITAFQIDYPSKFATLSHGQILGSIMGSGIDRDVIGDIVTDGLNWQFMCE 138
>gi|331701066|ref|YP_004398025.1| RNA-binding S4 domain-containing protein [Lactobacillus buchneri
NRRL B-30929]
gi|329128409|gb|AEB72962.1| RNA-binding S4 domain protein [Lactobacillus buchneri NRRL B-30929]
Length = 263
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 88 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT- 146
R A+ R +L +DFL P L + + V GGYP AE R +V P+
Sbjct: 26 GRVANEYRPIL-TDFLNPRQLYILETIVNRYEGVSFQTFGGYPSAELKR-AVAFPDYFVP 83
Query: 147 -SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ--NKGFLCS 198
+D + A I F SHG LGSI+G+GI R+ IGDI+ N F+C
Sbjct: 84 KADDYNITAFQIDYPSKFATLSHGQILGSIMGSGIDRDVIGDIVTDGLNWQFMCE 138
>gi|315651408|ref|ZP_07904433.1| ribosomal protein S4e [Lachnoanaerobaculum saburreum DSM 3986]
gi|315486367|gb|EFU76724.1| ribosomal protein S4e [Lachnoanaerobaculum saburreum DSM 3986]
Length = 249
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSVGH 141
L++AR A + V HS FL M +L ++K+V GGY +AER C
Sbjct: 13 LDLARNAYFKNIVTHSTFLNLYEQTIFEMIQNELPNIKSVMFGGYSEAERKIVCFYCDKK 72
Query: 142 PEALTSDPDIVAALSIT-GNFGF-QPCSHGDFLGSILGTGIAREKIGDI 188
P D D++ +SI N F + SH DFLG+I+ GI R IGDI
Sbjct: 73 P-----DFDMLECISIAPSNKKFAEELSHRDFLGAIMNLGIERHMIGDI 116
>gi|342732562|ref|YP_004771401.1| RNA-binding S4 domain-containing protein [Candidatus Arthromitus
sp. SFB-mouse-Japan]
gi|384455957|ref|YP_005668552.1| S4 domain-containing protein [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417960523|ref|ZP_12603108.1| hypothetical protein SFB1_326G3 [Candidatus Arthromitus sp. SFB-1]
gi|417960704|ref|ZP_12603246.1| hypothetical protein SFB2_000G5 [Candidatus Arthromitus sp. SFB-2]
gi|417965490|ref|ZP_12607008.1| hypothetical protein SFB4_249G1 [Candidatus Arthromitus sp. SFB-4]
gi|417967085|ref|ZP_12608281.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp. SFB-5]
gi|417969082|ref|ZP_12610044.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp. SFB-co]
gi|418016032|ref|ZP_12655597.1| S4 domain-containing protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372818|ref|ZP_12964910.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330017|dbj|BAK56659.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506367|gb|EGX28661.1| S4 domain-containing protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984300|dbj|BAK79976.1| S4 domain protein [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380330842|gb|EIA22005.1| hypothetical protein SFB1_326G3 [Candidatus Arthromitus sp. SFB-1]
gi|380335279|gb|EIA25512.1| hypothetical protein SFB2_000G5 [Candidatus Arthromitus sp. SFB-2]
gi|380337448|gb|EIA26502.1| hypothetical protein SFB4_249G1 [Candidatus Arthromitus sp. SFB-4]
gi|380338195|gb|EIA27122.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp. SFB-5]
gi|380338451|gb|EIA27338.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp. SFB-co]
gi|380342487|gb|EIA30932.1| RNA-binding S4 domain protein [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 258
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRA-SSRREVLHSDFLTPPVLKESMMALEKLADVKAV 124
+D +K G N+IE+ + + A S R ++ ++F T V L+ K +
Sbjct: 5 NDFIKSCG--NSIEDADKLFSLYVSALKSGRTIVTNEFYTINVCN----TLKNFLSSKEL 58
Query: 125 AQGGY---PQAERCRLSVGHPEALTSDPDIVA-ALSITGNFGFQPCSHGDFLGSILGTGI 180
GY AERC ++ S D A + I+ N F SH DFLGSI+ G
Sbjct: 59 NVSGYGFSDDAERCLIAFSLASIDVSIFDNAAKVVKISYNDKFSKLSHRDFLGSIMSLGF 118
Query: 181 AREKIGDIILQ 191
+REKIGD++++
Sbjct: 119 SREKIGDLVIE 129
>gi|397905182|ref|ZP_10506053.1| FIG001583: hypothetical protein, contains S4-like RNA binding
domain [Caloramator australicus RC3]
gi|397161831|emb|CCJ33387.1| FIG001583: hypothetical protein, contains S4-like RNA binding
domain [Caloramator australicus RC3]
Length = 251
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 92 SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA--ERCRLSVGHPEALTSDP 149
S + + + +DFL P E AL++L + V + + ER +G + +
Sbjct: 26 SKKWQTVFTDFLNP----EEQAALKELCSDEGVEVCFFDEGKLERTIAKLGLNDDIEYPI 81
Query: 150 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
D+ L I GNF F+ H D+LG+IL GI REKIGDI + G
Sbjct: 82 DV---LKIEGNFKFEQLEHRDYLGAILSLGIKREKIGDINVYEDG 123
>gi|427413804|ref|ZP_18903995.1| hypothetical protein HMPREF9282_01402 [Veillonella ratti
ACS-216-V-Col6b]
gi|425715127|gb|EKU78121.1| hypothetical protein HMPREF9282_01402 [Veillonella ratti
ACS-216-V-Col6b]
Length = 261
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
EE + +L++A + + + ++F++P V+ +++ A L +K GGY AER R
Sbjct: 18 EEARRMLDLAEQVVAGKPYRVTEFMSPAGLVIADAIKA--NLPQLKVEFGGGYEGAERIR 75
Query: 137 LSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
++ + + D+ + AL ++ + F+ +H D LGS++G GI R GDII+Q G
Sbjct: 76 VAFVEAD-FQGNVDLGIKALKVSWDPRFRLLTHRDVLGSLMGLGIERTNFGDIIMQTGG 133
>gi|379723208|ref|YP_005315339.1| RNA-binding S4 domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|386725930|ref|YP_006192256.1| RNA-binding S4 domain-containing protein [Paenibacillus
mucilaginosus K02]
gi|378571880|gb|AFC32190.1| RNA-binding S4 domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384093055|gb|AFH64491.1| RNA-binding S4 domain-containing protein [Paenibacillus
mucilaginosus K02]
Length = 260
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSIT 158
+DFL P + + DV+ + GG+P AER R V L S+ + LSIT
Sbjct: 36 TDFLDPRQAFILTTLVNRSMDVQLLLNGGHPSAERRRAWVAPDYRVLESEDPGITLLSIT 95
Query: 159 G-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ + HGD++G+IL GI REK+GDI ++ G
Sbjct: 96 SPDEKLEDLDHGDYMGAILSLGIKREKVGDIHVRPDG 132
>gi|337748291|ref|YP_004642453.1| RNA-binding S4 domain-containing protein [Paenibacillus
mucilaginosus KNP414]
gi|336299480|gb|AEI42583.1| RNA-binding S4 domain protein [Paenibacillus mucilaginosus KNP414]
Length = 260
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSIT 158
+DFL P + + DV+ + GG+P AER R V L S+ + LSIT
Sbjct: 36 TDFLDPRQAFILTTLVNRSMDVQLLLNGGHPSAERRRAWVAPDYRVLESEDPGITLLSIT 95
Query: 159 G-NFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ + HGD++G+IL GI REK+GDI ++ G
Sbjct: 96 SPDEKLEDLDHGDYMGAILSLGIKREKVGDIHVRPDG 132
>gi|294794611|ref|ZP_06759747.1| S4 domain protein [Veillonella sp. 3_1_44]
gi|294454941|gb|EFG23314.1| S4 domain protein [Veillonella sp. 3_1_44]
Length = 261
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
EE + +L++A + R +DF +P V+ +++ A VK GGY AER R
Sbjct: 18 EEARRMLDLAEQVVKGRPYRVADFTSPAGLVIADAIKANYPQLTVKT--DGGYEGAERIR 75
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
++ + + + AL + + F+ +H D LGS++G GI R K GD+I+Q G
Sbjct: 76 IAFVDSDFNGTVDMGIRALKVNWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQQGG 133
>gi|416998514|ref|ZP_11939275.1| S4 domain protein [Veillonella parvula ACS-068-V-Sch12]
gi|333977412|gb|EGL78270.1| S4 domain protein [Veillonella parvula ACS-068-V-Sch12]
Length = 261
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
EE + +L++A + R +DF +P V+ +++ A VK GGY AER R
Sbjct: 18 EEARRMLDLAEQVVKGRPYRVADFTSPAGLVIADAIKANYPQLTVKT--DGGYEGAERIR 75
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
++ + + + AL + + F+ +H D LGS++G GI R K GD+I+Q G
Sbjct: 76 IAFVDSDFNGTVDMGIRALKVNWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQQGG 133
>gi|113953560|ref|YP_731456.1| S4 domain-containing protein [Synechococcus sp. CC9311]
gi|113880911|gb|ABI45869.1| S4 domain protein [Synechococcus sp. CC9311]
Length = 259
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD---IVAALS 156
S FL+ +L+++ LE LA++K GGYP AER RL + H A + DP+ +A L+
Sbjct: 37 SPFLSALMLEDANQ-LESLAELKISRDGGYPGAERKRLLIQH--AASPDPEPHCPLAGLN 93
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
+ GNF F P S + ++ G+A E +GD+ ++
Sbjct: 94 VEGNFLFDPTSPDEMRLALHRIGVADESLGDLWIR 128
>gi|269798485|ref|YP_003312385.1| RNA-binding S4 domain-containing protein [Veillonella parvula DSM
2008]
gi|282849929|ref|ZP_06259312.1| S4 domain protein [Veillonella parvula ATCC 17745]
gi|269095114|gb|ACZ25105.1| RNA-binding S4 domain protein [Veillonella parvula DSM 2008]
gi|282580366|gb|EFB85766.1| S4 domain protein [Veillonella parvula ATCC 17745]
Length = 261
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
EE + +L++A + R +DF +P V+ +++ A VK GGY AER R
Sbjct: 18 EEARRMLDLAEQVVKGRPYRVADFTSPAGLVIADAIKANYPQLTVKT--DGGYEGAERIR 75
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
++ + + + AL + + F+ +H D LGS++G GI R K GD+I+Q G
Sbjct: 76 IAFVDSDFNGTVDMGIRALKVNWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQQGG 133
>gi|294792855|ref|ZP_06758002.1| S4 domain protein [Veillonella sp. 6_1_27]
gi|294456754|gb|EFG25117.1| S4 domain protein [Veillonella sp. 6_1_27]
Length = 261
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
EE + +L++A + R +DF +P V+ +++ A VK GGY AER R
Sbjct: 18 EEARRMLDLAEQVVKGRPYRVADFTSPAGLVIADAIKANYPQLTVKT--DGGYEGAERIR 75
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
++ + + + AL + + F+ +H D LGS++G GI R K GD+I+Q G
Sbjct: 76 IAFVDSDFNGTVDMGIRALKVNWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQQGG 133
>gi|167630162|ref|YP_001680661.1| hypothetical protein HM1_2093 [Heliobacterium modesticaldum Ice1]
gi|167592902|gb|ABZ84650.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
Length = 263
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 90 RASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP 149
R + R++V +DFL P + K + L V VA GGY AER RL + E D
Sbjct: 32 RRTHRQQV--TDFLEPYLRKAAQELLRGPGGVLCVADGGYEGAERQRLVLLPDEEDRPDS 89
Query: 150 DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
I L+ G + H D+LG++LG GI REK+GD+ +G
Sbjct: 90 RICWVLAEPVRKG-ERIGHRDYLGALLGLGIRREKVGDLKRTERG 133
>gi|78213667|ref|YP_382446.1| RNA-binding S4 [Synechococcus sp. CC9605]
gi|78198126|gb|ABB35891.1| RNA-binding S4 [Synechococcus sp. CC9605]
Length = 258
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
EE+ ++++A + + S FL+ P+ +E+M L L+++ ++ GGYP AER RL
Sbjct: 15 EELTLLVDLAEQVLRTWQPAWSPFLSAPLREEAMARLGSLSELTWMSDGGYPGAERQRLL 74
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
+ + L I GNF F P S D ++ G+ + IGD+ ++
Sbjct: 75 CHRRDDSPDAEPPIQGLLIEGNFLFDPLSPEDLREALQTMGVDADNIGDLWVR 127
>gi|220928051|ref|YP_002504960.1| RNA-binding S4 domain-containing protein [Clostridium
cellulolyticum H10]
gi|219998379|gb|ACL74980.1| RNA-binding S4 domain protein [Clostridium cellulolyticum H10]
Length = 260
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 99 HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS-- 156
+SDFL+P S L+++ +V GGY AER ++V + + D +S
Sbjct: 36 YSDFLSPYEASVSKKILDRVKEVFYKLTGGYDGAERV-ITVISNDFIEEDIPYSTPISLL 94
Query: 157 ----ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
+T N SH D+LGS+LG GI REKIGDI++ K
Sbjct: 95 RISPVTEN----KLSHRDYLGSLLGLGIKREKIGDILVSEK 131
>gi|376260959|ref|YP_005147679.1| hypothetical protein [Clostridium sp. BNL1100]
gi|373944953|gb|AEY65874.1| hypothetical protein Clo1100_1662 [Clostridium sp. BNL1100]
Length = 260
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 99 HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI---VAAL 155
+SDFL+P + L+++ DV GGY AER ++V + + D V L
Sbjct: 36 YSDFLSPYEASVAKKVLDRVKDVFYKLTGGYEGAERA-ITVISSDFIEEDIPYNTPVGLL 94
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGF 195
IT SH D+LGS+LG GI REKIGDI++ N+ F
Sbjct: 95 RITPVIE-NKLSHRDYLGSLLGLGIKREKIGDILV-NETF 132
>gi|326803766|ref|YP_004321584.1| S4 domain-containing protein [Aerococcus urinae ACS-120-V-Col10a]
gi|326651380|gb|AEA01563.1| S4 domain protein [Aerococcus urinae ACS-120-V-Col10a]
Length = 261
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V ++ R +S + S FL P + K D++ + GGYPQAE R+ +
Sbjct: 17 VDQVINWKNRVASSFQPFLSHFLDPREQAIVYSIIGKDEDIQVIDFGGYPQAEMRRMIIA 76
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+D D ++ + I F H LG++LG G+ R +IGDII
Sbjct: 77 PRYEEVNDGDFNISLIQINYAAKFNHIEHRQVLGTLLGQGLQRNRIGDII 126
>gi|421074254|ref|ZP_15535294.1| RNA-binding S4 domain protein [Pelosinus fermentans JBW45]
gi|392527760|gb|EIW50846.1| RNA-binding S4 domain protein [Pelosinus fermentans JBW45]
Length = 261
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+L++A A R+ ++FL P + +K V+ GGY AER + +V E
Sbjct: 23 LLDLAEAALRNRKYKVTEFLDPYGYSIAETIGAHYDRLKLVSSGGYDGAERVK-AVFVNE 81
Query: 144 ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
PD+ V A+S+T + + +H D LG+++ GI RE IGDII+
Sbjct: 82 EFRGTPDVAVEAVSVTWDERYYQITHRDVLGALMALGIKREIIGDIIM 129
>gi|238018691|ref|ZP_04599117.1| hypothetical protein VEIDISOL_00535 [Veillonella dispar ATCC 17748]
gi|237865162|gb|EEP66452.1| hypothetical protein VEIDISOL_00535 [Veillonella dispar ATCC 17748]
Length = 261
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
EE + +L++A + R +DF +P V+ +++ A VK GGY AER R
Sbjct: 18 EEARRMLDLAEQVVKGRPYRVADFTSPAGLVIADAIKANYPQLIVKT--DGGYEGAERIR 75
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
++ + + + AL + + F+ +H D LGS++G GI R K GD+I+Q G
Sbjct: 76 IAFVDSDFNGTVDMGIRALKVNWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQQGG 133
>gi|326791369|ref|YP_004309190.1| RNA-binding S4 domain-containing protein [Clostridium lentocellum
DSM 5427]
gi|326542133|gb|ADZ83992.1| RNA-binding S4 domain protein [Clostridium lentocellum DSM 5427]
Length = 259
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 69 LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQ 126
L + D + VK +LE ++R+ + + +DF L SM+ +E+
Sbjct: 5 LNHINDADEKRFVKMMLEYSKRSEQQFRPIFTDFYNKEWLL-SMIDRYIEESTKQMCYFY 63
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVA-ALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GG+ +AER L + E D I+A L + G + +H D+LG++LG GI RE I
Sbjct: 64 GGFEEAERQVLGIAPYEIQEEDFPIMALELKVKTGIG-KALTHRDYLGALLGLGIERETI 122
Query: 186 GDIILQ 191
GDI+++
Sbjct: 123 GDIVIK 128
>gi|313892887|ref|ZP_07826464.1| S4 domain protein [Veillonella sp. oral taxon 158 str. F0412]
gi|313442240|gb|EFR60655.1| S4 domain protein [Veillonella sp. oral taxon 158 str. F0412]
Length = 261
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCR 136
EE + +L++A + R +DF +P V+ +++ A VK GGY AER R
Sbjct: 18 EEARRMLDLAEQVVKGRPYRVADFTSPAGLVIADAIKANYPQLIVKT--DGGYEGAERIR 75
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
++ + + + AL + + F+ +H D LGS++G GI R K GD+I+Q G
Sbjct: 76 IAFVDSDFNGTVDMGIRALKVNWDPRFRLLTHRDVLGSLMGLGIDRSKFGDVIVQQGG 133
>gi|121535251|ref|ZP_01667065.1| RNA-binding S4 domain protein [Thermosinus carboxydivorans Nor1]
gi|121306136|gb|EAX47064.1| RNA-binding S4 domain protein [Thermosinus carboxydivorans Nor1]
Length = 262
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E +L+ A R+ S FL P + A ++ + GGY AER +
Sbjct: 19 ELAARLLDYAETVLRTRKYRASHFLDPFGFSVAETIAAHFAPLRLESSGGYEGAERVKAV 78
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
H + L S +AA+ I + + SH D LG+++G GI R+ +GDII+ G
Sbjct: 79 FVHEDFLGSIDFAIAAVGIAWDARYYELSHRDMLGALMGLGIDRDVVGDIIMTGSG 134
>gi|110800170|ref|YP_696535.1| S4 domain-containing protein [Clostridium perfringens ATCC 13124]
gi|182625685|ref|ZP_02953454.1| S4 domain protein [Clostridium perfringens D str. JGS1721]
gi|422346521|ref|ZP_16427435.1| hypothetical protein HMPREF9476_01508 [Clostridium perfringens
WAL-14572]
gi|422874771|ref|ZP_16921256.1| S4 domain-containing protein [Clostridium perfringens F262]
gi|110674817|gb|ABG83804.1| S4 domain protein [Clostridium perfringens ATCC 13124]
gi|177909087|gb|EDT71562.1| S4 domain protein [Clostridium perfringens D str. JGS1721]
gi|373226066|gb|EHP48393.1| hypothetical protein HMPREF9476_01508 [Clostridium perfringens
WAL-14572]
gi|380304412|gb|EIA16701.1| S4 domain-containing protein [Clostridium perfringens F262]
Length = 253
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
V +F TP V S + L DV + G + ER R+ + E P ++ L
Sbjct: 34 VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGER-RVIAFNKEEYDLFP--ISLLR 88
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
I N F H D+LGSI+ GI R KIGD+IL++ G
Sbjct: 89 IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDDG 126
>gi|110802596|ref|YP_699135.1| S4 domain-containing protein [Clostridium perfringens SM101]
gi|110683097|gb|ABG86467.1| S4 domain protein [Clostridium perfringens SM101]
Length = 253
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
V +F TP V S + L DV + G + ER R+ + E P ++ L
Sbjct: 34 VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGER-RVIAFNKEEYDLFP--ISLLR 88
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
I N F H D+LGSI+ GI R KIGD+IL++ G
Sbjct: 89 IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDDG 126
>gi|168206094|ref|ZP_02632099.1| S4 domain protein [Clostridium perfringens E str. JGS1987]
gi|169343604|ref|ZP_02864603.1| S4 domain protein [Clostridium perfringens C str. JGS1495]
gi|169298164|gb|EDS80254.1| S4 domain protein [Clostridium perfringens C str. JGS1495]
gi|170662411|gb|EDT15094.1| S4 domain protein [Clostridium perfringens E str. JGS1987]
Length = 253
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
V +F TP V S + L DV + G + ER R+ + E P ++ L
Sbjct: 34 VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGER-RVIAFNKEEYDLFP--ISLLR 88
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
I N F H D+LGSI+ GI R KIGD+IL++ G
Sbjct: 89 IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDDG 126
>gi|227498574|ref|ZP_03928718.1| S4 RNA-binding protein [Acidaminococcus sp. D21]
gi|352684241|ref|YP_004896226.1| S4 RNA-binding protein [Acidaminococcus intestini RyC-MR95]
gi|226904030|gb|EEH89948.1| S4 RNA-binding protein [Acidaminococcus sp. D21]
gi|350278896|gb|AEQ22086.1| S4 RNA-binding protein [Acidaminococcus intestini RyC-MR95]
Length = 261
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
++++A +A R + SDF+ P + + + + + GG+ AER R++
Sbjct: 22 KLIDLADQARRNRRYMVSDFMDPHGINVADIVASNYTQITMKSFGGFQNAERMRIAY-VV 80
Query: 143 EALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ +PD +AAL +T + + H D LG+ G G +R+ +GDI+ ++G
Sbjct: 81 DDFYGEPDFAIAALLVTWDKRYYDVGHRDVLGAFTGMGCSRDILGDIVFTDEG 133
>gi|332798174|ref|YP_004459673.1| RNA-binding S4 domain-containing protein [Tepidanaerobacter
acetatoxydans Re1]
gi|438001091|ref|YP_007270834.1| FIG001583: hypothetical protein, contains S4-like RNA binding
domain [Tepidanaerobacter acetatoxydans Re1]
gi|332695909|gb|AEE90366.1| RNA-binding S4 domain protein [Tepidanaerobacter acetatoxydans Re1]
gi|432177885|emb|CCP24858.1| FIG001583: hypothetical protein, contains S4-like RNA binding
domain [Tepidanaerobacter acetatoxydans Re1]
Length = 254
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
++ I +AR+ ++ S+FL P + + M + GGY +AER ++ V
Sbjct: 13 IRDIFTIARKNRGKK---ASNFLDPGQQQMAEMVARSFPGMGFYFNGGYEKAER-KILVA 68
Query: 141 HPEALTSDP--DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+PE + +P + + AL I + H D+LG+IL GI REK+GDI++
Sbjct: 69 YPEDMLDEPFREPLGALRIIPKNSDEHPGHRDYLGAILALGINREKLGDILV 120
>gi|18310834|ref|NP_562768.1| S4 domain-containing protein [Clostridium perfringens str. 13]
gi|168215480|ref|ZP_02641105.1| S4 domain protein [Clostridium perfringens NCTC 8239]
gi|18145516|dbj|BAB81558.1| probable cell-division protein [Clostridium perfringens str. 13]
gi|182382018|gb|EDT79497.1| S4 domain protein [Clostridium perfringens NCTC 8239]
Length = 253
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
V +F TP V S + L DV + G + ER ++ E D ++ L
Sbjct: 34 VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGERRVIAFNKDEY---DLFPISLLR 88
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
I N F H D+LGSI+ GI R KIGD+IL++ G
Sbjct: 89 IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDDG 126
>gi|309778070|ref|ZP_07673009.1| putative S4 domain protein [Erysipelotrichaceae bacterium 3_1_53]
gi|308914164|gb|EFP59965.1| putative S4 domain protein [Erysipelotrichaceae bacterium 3_1_53]
Length = 250
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 77 AIEEVKHILEMARRASS---RREVLHSDFLTPPVLKESMMALEKLADVKAV--AQGGYPQ 131
AIE + E RR R E + +TP + + E+ + + QGGY Q
Sbjct: 4 AIEHYRGNEEFVRRLQDQIDRMERWNRIVVTPFFSPDQIQIAERFCGHRILYRKQGGYAQ 63
Query: 132 AERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
AERCRL+ E P + +I+ +FG +H D LG+++ GI REK GD+I+
Sbjct: 64 AERCRLAFLPWEEDVDIPILHVKANISSSFG--QITHRDVLGALMHLGIEREKTGDLIV 120
>gi|168210785|ref|ZP_02636410.1| S4 domain protein [Clostridium perfringens B str. ATCC 3626]
gi|170711149|gb|EDT23331.1| S4 domain protein [Clostridium perfringens B str. ATCC 3626]
Length = 253
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
V +F TP V S + L DV + G + ER ++ E D ++ L
Sbjct: 34 VFTDEFYTPDVW--STLQEMNLFDVNVESFGFFEDGERRVIAFNKDEY---DLFPISLLR 88
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
I N F H D+LGSI+ GI R KIGD+IL++ G
Sbjct: 89 IQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDDG 126
>gi|402839267|ref|ZP_10887760.1| hypothetical protein HMPREF1143_1598 [Eubacteriaceae bacterium
OBRC8]
gi|402270806|gb|EJU20064.1| hypothetical protein HMPREF1143_1598 [Eubacteriaceae bacterium
OBRC8]
Length = 261
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 96 EVLHSDFLTPPVLKESMMALEKLA-DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 154
++ +DF+ P + + L + ++ A GG +ER ++ + +P+ + V
Sbjct: 35 DIRRTDFMNPYEQRLFISVLNAFSNEISYQAVGGNENSER-KMFLIYPDYIYEVELPVKL 93
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFL 196
L + GNF F+ SH D LG+++ GI REKIGDI + K F+
Sbjct: 94 LRLYGNFKFEKISHRDCLGALMSVGITREKIGDIYVH-KDFI 134
>gi|363889582|ref|ZP_09316942.1| hypothetical protein HMPREF9628_00269 [Eubacteriaceae bacterium
CM5]
gi|361966649|gb|EHL19548.1| hypothetical protein HMPREF9628_00269 [Eubacteriaceae bacterium
CM5]
Length = 261
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 96 EVLHSDFLTPPVLKESMMALEKLA-DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 154
++ +DF+ P + + L + ++ A GG +ER ++ + +P+ + V
Sbjct: 35 DIRRTDFMNPYEQRLFISVLNAFSNEISYQAVGGNENSER-KMFLIYPDYIYEVELPVKL 93
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFL 196
L + GNF F+ SH D LG+++ GI REKIGDI + K F+
Sbjct: 94 LRLYGNFKFEKISHRDCLGALMSVGITREKIGDIYVH-KDFI 134
>gi|392960481|ref|ZP_10325949.1| RNA-binding S4 domain protein [Pelosinus fermentans DSM 17108]
gi|421054762|ref|ZP_15517727.1| RNA-binding S4 domain protein [Pelosinus fermentans B4]
gi|421061533|ref|ZP_15523848.1| RNA-binding S4 domain protein [Pelosinus fermentans B3]
gi|421066814|ref|ZP_15528368.1| RNA-binding S4 domain protein [Pelosinus fermentans A12]
gi|421071625|ref|ZP_15532741.1| RNA-binding S4 domain protein [Pelosinus fermentans A11]
gi|392440443|gb|EIW18123.1| RNA-binding S4 domain protein [Pelosinus fermentans B4]
gi|392446890|gb|EIW24161.1| RNA-binding S4 domain protein [Pelosinus fermentans A11]
gi|392449284|gb|EIW26413.1| RNA-binding S4 domain protein [Pelosinus fermentans B3]
gi|392453094|gb|EIW29998.1| RNA-binding S4 domain protein [Pelosinus fermentans A12]
gi|392455058|gb|EIW31865.1| RNA-binding S4 domain protein [Pelosinus fermentans DSM 17108]
Length = 261
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
+L++A A R+ ++FL P + +K VA GGY AER + +V
Sbjct: 22 KLLDLAEAALRNRKYKVTEFLDPYGYSIAETIGAHYDRLKLVASGGYDGAERVK-AVFIN 80
Query: 143 EALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
E PD V A+S+T + + +H D LG+++ GI RE IGDII+
Sbjct: 81 EEFRGTPDAAVEAVSVTWDERYYQITHRDVLGALMALGIKREIIGDIIM 129
>gi|225378090|ref|ZP_03755311.1| hypothetical protein ROSEINA2194_03750 [Roseburia inulinivorans DSM
16841]
gi|225210091|gb|EEG92445.1| hypothetical protein ROSEINA2194_03750 [Roseburia inulinivorans DSM
16841]
Length = 249
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K +++++R+A+ + VL SDFL L EK + K A GG P AER ++
Sbjct: 9 KKLIDLSRQANRKGIVLFSDFLNLNELN-IYHQNEKFFETKTEASGGVPFAER-QIVAFI 66
Query: 142 PEALTSDPDI-VAALSITGNF-GF-QPCSHGDFLGSILGTGIAREKIGDIIL-QNKGFL 196
P+AL + +A L I ++ F + H D LGS++ G+ R K+GDI++ ++K FL
Sbjct: 67 PDALYYEWQFPIAYLEIVPSYPKFAEKLGHRDILGSMMNLGVDRSKLGDIVICEDKYFL 125
>gi|260436697|ref|ZP_05790667.1| photosystem II S4 domain protein [Synechococcus sp. WH 8109]
gi|260414571|gb|EEX07867.1| photosystem II S4 domain protein [Synechococcus sp. WH 8109]
Length = 258
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 159
S FL+ P+ +E++ L L+++ ++ GGYP AER RL + L I G
Sbjct: 36 SPFLSAPLREEALARLGNLSELTWISDGGYPDAERQRLLCHRRDDSPDSGAPTQGLLIEG 95
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
NF F P S D ++ G+ +KIGD+ ++
Sbjct: 96 NFLFDPLSPDDLREALQLMGVNADKIGDLWVR 127
>gi|363895505|ref|ZP_09322500.1| hypothetical protein HMPREF9629_00782 [Eubacteriaceae bacterium
ACC19a]
gi|361957257|gb|EHL10567.1| hypothetical protein HMPREF9629_00782 [Eubacteriaceae bacterium
ACC19a]
Length = 261
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 96 EVLHSDFLTPPVLKESMMALEKLA-DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 154
++ +DF+ P + + L + ++ A GG +ER ++ + +P+ + +
Sbjct: 35 DIRRTDFMNPYEQRLFISVLNAFSNEISCQAVGGNENSER-KMFLIYPDYIYEVELPIKL 93
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFL 196
L + GNF F+ SH D LG+++ GI REKIGDI + K F+
Sbjct: 94 LRLYGNFKFEKISHRDCLGALMSVGITREKIGDIYVH-KDFI 134
>gi|403745293|ref|ZP_10954231.1| hypothetical protein URH17368_1533 [Alicyclobacillus hesperidum
URH17-3-68]
gi|403121521|gb|EJY55814.1| hypothetical protein URH17368_1533 [Alicyclobacillus hesperidum
URH17-3-68]
Length = 256
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 62/124 (50%), Gaps = 16/124 (12%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLS 138
+K + + A +R +DFLTP +E +A V GGY AER R+
Sbjct: 15 LKQVEDWAAHVHARGTWYLTDFLTP---RERWIAESAARHSGLVTSDFGGYTDAERVRML 71
Query: 139 V----GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL--QN 192
+ HPEA SD DI L+IT QP H D LGS+LG GI R+ +GDI + Q
Sbjct: 72 LMPEDWHPEA--SDYDI-KCLAITALE--QPIRHRDVLGSVLGLGIQRKTVGDIAVFDQK 126
Query: 193 KGFL 196
+ ++
Sbjct: 127 RAYV 130
>gi|124026489|ref|YP_001015604.1| S4-like domain-containing protein [Prochlorococcus marinus str.
NATL1A]
gi|123961557|gb|ABM76340.1| Uncharacterized conserved protein, contains S4-like domain
[Prochlorococcus marinus str. NATL1A]
Length = 262
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
+E++ +L A +A S R + S F++ +++E L D+ + +GG+P AER R+
Sbjct: 16 KELETLLHFAEKALSERAAIWSPFISAQLIEEVKNRFNNLNDISLIFEGGFPSAERKRIC 75
Query: 139 VGHPEALTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
P I + + I GNF F DF + + IGDI L
Sbjct: 76 FLRSVEEMHSPSIEIPIKGIYIKGNFLFDRAKQNDFRDLLYELHAQADDIGDIWL 130
>gi|28211284|ref|NP_782228.1| RNA binding protein [Clostridium tetani E88]
gi|28203724|gb|AAO36165.1| RNA binding protein [Clostridium tetani E88]
Length = 258
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
DK+ I + + + + +S V++++ PP + +++ L +K + G + +AE
Sbjct: 16 DKSLISSIYDKILLCEKINS---VVYTEEFYPPNIWKAIENLSHHLSIKVYSSGVFKEAE 72
Query: 134 RCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
R R+ P+ + P V L I F P H D++G I+ GI R K+GD IL++
Sbjct: 73 R-RMLAFSPDEVWYYP--VDLLKIENGSKFLPLRHKDYMGGIMSLGIKRYKLGDFILKDN 129
Query: 194 GFLCSGC 200
+ C
Sbjct: 130 VCYVAVC 136
>gi|363892722|ref|ZP_09319881.1| hypothetical protein HMPREF9630_01959 [Eubacteriaceae bacterium
CM2]
gi|361963025|gb|EHL16116.1| hypothetical protein HMPREF9630_01959 [Eubacteriaceae bacterium
CM2]
Length = 261
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 96 EVLHSDFLTPPVLKESMMALEKLA-DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 154
++ +DF+ P + + L + ++ A GG +ER ++ + +P+ + +
Sbjct: 35 DIRRTDFMNPYEQRLFISVLNAFSNEISYQAVGGNENSER-KMFLIYPDYIYEVELPIKL 93
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFL 196
L + GNF F+ SH D LG+++ GI REKIGDI + K F+
Sbjct: 94 LRLYGNFKFEKISHRDCLGALMSVGITREKIGDIYVH-KDFI 134
>gi|301300395|ref|ZP_07206597.1| S4 domain protein [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851997|gb|EFK79679.1| S4 domain protein [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 262
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
FL P + + K DVK GGY AER R ++ +P D D + + I
Sbjct: 38 FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-TIFYPSYYEVQDDDFNLELIMIKY 96
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK--GFLCS 198
F +HG LG++ +G+ RE IGDII QN FLC
Sbjct: 97 PVKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTWQFLCE 137
>gi|433654813|ref|YP_007298521.1| hypothetical protein Thethe_01171 [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293002|gb|AGB18824.1| hypothetical protein Thethe_01171 [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 247
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 7/108 (6%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
++A+ + ++DFL+ K + +++ D+ GG+ +AER +++ +P+
Sbjct: 10 DIAKWVQKNKRDRYTDFLSMREQKILLKLIKQFDDINCRFDGGFEKAER-KMAHIYPKFK 68
Query: 146 TSDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ + ++ A+ I+G+ SH D LGSILG GI R+K+GDII
Sbjct: 69 NVEDETHIVLLNAIRISGDLS--KLSHRDVLGSILGLGIKRDKVGDII 114
>gi|90962019|ref|YP_535935.1| RNA binding protein [Lactobacillus salivarius UCC118]
gi|90821213|gb|ABD99852.1| RNA binding protein [Lactobacillus salivarius UCC118]
Length = 262
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
FL P + + K DVK GGY AER R ++ +P D D + + I
Sbjct: 38 FLNPREQYIAQSLIHKKQDVKVSFSGGYKNAERKR-AIFYPSYYEVQDDDFNLELIMIKY 96
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK--GFLCS 198
F +HG LG++ +G+ RE IGDII QN FLC
Sbjct: 97 PVKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTWQFLCE 137
>gi|295109996|emb|CBL23949.1| Uncharacterized conserved protein, contains S4-like domain
[Ruminococcus obeum A2-162]
Length = 250
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAV---AQGGYPQAERCRL 137
+K I E+A + R V SDFL L E + E+ + V GGY QAER ++
Sbjct: 8 IKRIRELANLSYQRDIVTFSDFLN---LNEQNIVNEQKNQMPGVIIECSGGYEQAER-QM 63
Query: 138 SVGHPEALTSDPDI-VAALSI---TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
HP+AL + + L I F + +H DFLG++L GI R IGDI++Q
Sbjct: 64 VAFHPDALLFPWEYPITCLKIEPLAAKFS-ESLTHRDFLGAVLNLGIERSVIGDILVQ 120
>gi|333897310|ref|YP_004471184.1| RNA-binding S4 domain-containing protein [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112575|gb|AEF17512.1| RNA-binding S4 domain protein [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 247
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
+M R +DFL+ K + ++K D+ GG+ +AER +++ +P L
Sbjct: 10 DMINWVQKNRRDRFTDFLSMKDQKILLKLIDKHDDIDCRFDGGFKEAER-KIACIYPSFL 68
Query: 146 T-SDP---DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
SD D + + I G+ SH D LGS+LG GI REKIGDII
Sbjct: 69 AISDGEHFDAIKGIRINGDL--IRLSHRDVLGSLLGLGIKREKIGDII 114
>gi|385840602|ref|YP_005863926.1| RNA binding protein [Lactobacillus salivarius CECT 5713]
gi|300214723|gb|ADJ79139.1| RNA binding protein [Lactobacillus salivarius CECT 5713]
Length = 277
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
FL P + + K DVK GGY AER R ++ +P D D + + I
Sbjct: 53 FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-AIFYPSYYEVQDDDFNLELIMIKY 111
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG--FLCS 198
F +HG LG++ +G+ RE IGDII QN FLC
Sbjct: 112 PVKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTWQFLCE 152
>gi|227891037|ref|ZP_04008842.1| ribosomal protein S4e [Lactobacillus salivarius ATCC 11741]
gi|227867126|gb|EEJ74547.1| ribosomal protein S4e [Lactobacillus salivarius ATCC 11741]
Length = 262
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
FL P + + K DVK GGY AER R ++ +P D D + + I
Sbjct: 38 FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-AIFYPSYYEVQDDDFNLELIMIKY 96
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK--GFLCS 198
F +HG LG++ +G+ RE IGDII QN FLC
Sbjct: 97 PVKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTWQFLCE 137
>gi|78779838|ref|YP_397950.1| RNA-binding S4 [Prochlorococcus marinus str. MIT 9312]
gi|78713337|gb|ABB50514.1| RNA-binding S4 [Prochlorococcus marinus str. MIT 9312]
Length = 263
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DL + + + N EE + ++ +A A E + F + V +E E L D K
Sbjct: 3 DLKEILINSNYKEETEELINIANLAYKHWETYWTGFNSTYVCEEISKDFENLNDFKFFVY 62
Query: 127 GGYPQAERCRL------SVGHPEALTSD-PDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
GG+ ++R R+ ++ +AL S+ P + I GNF F + DF ++ G
Sbjct: 63 GGFSSSQRSRIACFRGDNIPEEDALKSNFP--AQGIKINGNFLFDNATQDDFRSLLIENG 120
Query: 180 IAREKIGDI 188
+ + K+GDI
Sbjct: 121 VHKVKVGDI 129
>gi|78184102|ref|YP_376537.1| RNA-binding S4 [Synechococcus sp. CC9902]
gi|78168396|gb|ABB25493.1| RNA-binding S4 [Synechococcus sp. CC9902]
Length = 261
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
++LL G D + + ++++A + + S FL + +E++ L L+++
Sbjct: 6 EELLTGADDPAGL---RQLIQLADQVVRTWQPAWSPFLDARLQEEALERLSNLSEIGWHR 62
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGYP AERCR + + D D V L I GNF F P S D ++ G A
Sbjct: 63 DGGYPGAERCRFLCQRRDPI-GDADTCAPVQGLLIEGNFLFDPLSPEDIRNALQELGAAP 121
Query: 183 EKIGDIILQ 191
++IGD+ ++
Sbjct: 122 DQIGDLWVR 130
>gi|375309381|ref|ZP_09774662.1| RNA-binding s4 domain-containing protein [Paenibacillus sp.
Aloe-11]
gi|375078690|gb|EHS56917.1| RNA-binding s4 domain-containing protein [Paenibacillus sp.
Aloe-11]
Length = 260
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 100 SDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 156
+DFL P L E++ + E ++ GGY +ER R + + D D+ + LS
Sbjct: 36 TDFLDPRQLYILETLSSKEDKVTIRL--DGGYEASERKRALIAPDYSYLDDEDMGIRVLS 93
Query: 157 ITGN-FGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
I+ + HGD+LG+ILG GI R KIGDI + + G
Sbjct: 94 ISSDDHKISTLEHGDYLGAILGLGIKRGKIGDIHVLDDG 132
>gi|357037201|ref|ZP_09099001.1| RNA-binding S4 domain protein [Desulfotomaculum gibsoniae DSM 7213]
gi|355361366|gb|EHG09121.1| RNA-binding S4 domain protein [Desulfotomaculum gibsoniae DSM 7213]
Length = 273
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 64 NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
+ D L V + E + +++A A +DF P A+ L D+
Sbjct: 11 HLDKLQSMVTNPEDREILARAMDLAEVAGKSHRPQVTDFYDPYRCAMIARAMGYLPDLAV 70
Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
V GGYP AER R+ + D D ++ L++ G+F F +H D+LG++LG G+ R
Sbjct: 71 VVDGGYPAAERSRVLIFPDYMFAGDVDTGLSFLAVKGSFRFNTVTHRDYLGALLGLGLRR 130
Query: 183 EKIGDIILQNKG 194
EK+GDI++ G
Sbjct: 131 EKLGDILVGEDG 142
>gi|72382767|ref|YP_292122.1| RNA-binding S4 [Prochlorococcus marinus str. NATL2A]
gi|72002617|gb|AAZ58419.1| RNA-binding S4 [Prochlorococcus marinus str. NATL2A]
Length = 262
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
+E++ +L A +A S R + S FL+ +++E L D+ + +GG+P AER R+
Sbjct: 16 KELETLLHFAEKALSERTAIWSPFLSAQLIEEVKDRFNNLNDISLLFEGGFPSAERKRIC 75
Query: 139 VGHPEALTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
P I + + I GNF F DF I + IGDI L
Sbjct: 76 FLRSVEEMHSPSIEIPIKGIYIKGNFLFDRAKQSDFRDLIHELHDQADDIGDIWL 130
>gi|153853144|ref|ZP_01994553.1| hypothetical protein DORLON_00538 [Dorea longicatena DSM 13814]
gi|149753930|gb|EDM63861.1| S4 domain protein [Dorea longicatena DSM 13814]
Length = 251
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ++E++R A +R V+ SDFL L + + + GGY +ER +++V
Sbjct: 10 KRLVELSRLAYNRGIVIFSDFLNLNELNILHTTPKDMFLSQYKTYGGYDLSER-QMAVFL 68
Query: 142 PEALTSDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
P+AL D + I+ + F + +H D+LG+++ GI R K+GDII++++
Sbjct: 69 PDALYYDYEYPIQIIEVTPSSKRFA-EDLTHRDYLGALMNLGIERSKVGDIIVEDQ 123
>gi|374709389|ref|ZP_09713823.1| RNA-binding S4 domain-containing protein [Sporolactobacillus
inulinus CASD]
Length = 257
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ H L++ + S R +DF+ P + K V GGY AER R +
Sbjct: 15 IDHFLDLIDQVSQRYIPRLTDFMDPRQQTILRSLIGKNDAVHLSIFGGYEHAERARALLL 74
Query: 141 HPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG--FLC 197
P SDP +A L + F +H + LG++LG+GI+R KIGD+++ + F+C
Sbjct: 75 PPYFEPDSDPFDLAYLDVRYPAKFGSVTHPELLGALLGSGISRNKIGDLLIGEEAAQFIC 134
Query: 198 SGCLQ 202
L+
Sbjct: 135 VKELE 139
>gi|313888339|ref|ZP_07822010.1| S4 domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845742|gb|EFR33132.1| S4 domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 260
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 100 SDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAALS 156
+DFL P + S+ L + D + GGY +E + + +P + D D+V
Sbjct: 41 TDFLNPREINLSISILNRFKDNISYKVDGGYEDSESSIIYI-YPSYMYENEDDDLVLFKF 99
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
T N HGD LGSILG I R KIGDI++ K
Sbjct: 100 DTNN----KIKHGDILGSILGLSIDRGKIGDILIGEK 132
>gi|404329203|ref|ZP_10969651.1| RNA-binding S4 domain-containing protein [Sporolactobacillus vineae
DSM 21990 = SL153]
Length = 257
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 159
+DFL P + + + K DV+ GGYP AER R ++ P + + + ++
Sbjct: 34 TDFLDPRQQRVLELIIGKNDDVRVTFSGGYPDAERKR-ALLLPPYIPEEGEAFELTAVEV 92
Query: 160 NFG--FQPCSHGDFLGSILGTGIAREKIGDIIL--QNKGFLCSGCLQ 202
F F SH + LG++ GTG+ R+KIGD+++ F+C+ ++
Sbjct: 93 AFASKFISLSHPELLGALTGTGVNRDKIGDLMVTGDRAQFICTKDIE 139
>gi|326203533|ref|ZP_08193397.1| RNA-binding S4 domain protein [Clostridium papyrosolvens DSM 2782]
gi|325986353|gb|EGD47185.1| RNA-binding S4 domain protein [Clostridium papyrosolvens DSM 2782]
Length = 260
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 13/136 (9%)
Query: 66 DDLLKGVG---DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVK 122
++LLK V D+ + + +E R +S ++SDFL+P L+++ D
Sbjct: 4 NELLKMVSKLEDRVLVSRLLDKVEQCRYSS----FVYSDFLSPYEASVVKKVLDRVKDAF 59
Query: 123 AVAQGGYPQAERCRLSVGHPEALTSDPDI---VAALSITGNFGFQPCSHGDFLGSILGTG 179
GGY AER ++V + + D ++ L IT SH D+LGS++G G
Sbjct: 60 YKLTGGYEGAERA-ITVISSDFIEEDIPYSTPISLLRITPVID-NKLSHRDYLGSLIGLG 117
Query: 180 IAREKIGDIILQNKGF 195
I REKIGDI++ N+ F
Sbjct: 118 IKREKIGDILV-NETF 132
>gi|313891380|ref|ZP_07824996.1| S4 domain protein [Dialister microaerophilus UPII 345-E]
gi|313120155|gb|EFR43331.1| S4 domain protein [Dialister microaerophilus UPII 345-E]
Length = 263
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 73 GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
GD+ A E ++++A R S F++P ++ + V + GGY +A
Sbjct: 15 GDE-AKEMAIRLVDLAESVERGRPFTVSSFMSPLSIQIGQTIAAHMKTVTSSYNGGYHEA 73
Query: 133 ERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
ER +++ + ++ LS+T + F+ H D LGS++G GI RE +GDI++Q
Sbjct: 74 ERVKVAFQSNDYGGKVNYEISLLSVTWDDRFRLIGHRDVLGSLMGLGIEREVLGDILMQ 132
>gi|126696880|ref|YP_001091766.1| S4-like domain-containing protein [Prochlorococcus marinus str. MIT
9301]
gi|126543923|gb|ABO18165.1| Uncharacterized conserved protein, contains S4-like
domain-containing protein [Prochlorococcus marinus str.
MIT 9301]
Length = 263
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DL + + + N +E + ++ +A A E + F + V +E + E L D K
Sbjct: 3 DLKEILINSNYKKETEELINIANLAYKHWETYWTGFNSTYVCEEILKDFENLNDFKFFIY 62
Query: 127 GGYPQAERCRL------SVGHPEALTSD-PDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
GG+ ++R R+ ++ +AL S+ P + I GNF F + DF ++ G
Sbjct: 63 GGFSSSQRSRIACFRGDNIPEEDALKSNFP--AQGIKINGNFLFDNATQDDFRSLLIKNG 120
Query: 180 IAREKIGDI 188
+ + K+GDI
Sbjct: 121 VNQLKVGDI 129
>gi|329121439|ref|ZP_08250063.1| S4 domain protein [Dialister micraerophilus DSM 19965]
gi|327469354|gb|EGF14824.1| S4 domain protein [Dialister micraerophilus DSM 19965]
Length = 263
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 73 GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
GD+ A E ++++A R S F++P ++ + V + GGY +A
Sbjct: 15 GDE-AKEMAIRLVDLAESVERGRPFTVSSFMSPLSIQIGQTIAAHMKTVTSSYNGGYHEA 73
Query: 133 ERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
ER +++ + ++ LS+T + F+ H D LGS++G GI RE +GDI++Q
Sbjct: 74 ERVKVAFQSNDYGGKVNYEISLLSVTWDDRFRLIGHRDVLGSLMGLGIEREVLGDILMQ 132
>gi|373494493|ref|ZP_09585096.1| hypothetical protein HMPREF0380_00734 [Eubacterium infirmum F0142]
gi|371968423|gb|EHO85882.1| hypothetical protein HMPREF0380_00734 [Eubacterium infirmum F0142]
Length = 253
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 91 ASSRREVLHSDFLTPPVLKESMMALEKLA--DVKAVAQGGYPQAERCRLSVGHPEALT-- 146
AS + + +SDFL P + + DV V GGY AER + P+ ++
Sbjct: 18 ASEKYMLTYSDFLDPHEHSAASNYIRGKGRFDVDIVFFGGYEDAERV-IMFCLPDYISIN 76
Query: 147 -SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ D++ + + G + HGD+LGS+ G G++R KIGDI++ G
Sbjct: 77 DASNDVLKVIRVRTKEGGKALRHGDYLGSLTGLGVSRGKIGDILVNEDG 125
>gi|347531807|ref|YP_004838570.1| RNA-binding S4 domain-containing protein [Roseburia hominis A2-183]
gi|345501955|gb|AEN96638.1| RNA-binding S4 domain-containing protein [Roseburia hominis A2-183]
Length = 250
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K +L+++R+A + VL SDFL L + EKL + GG P AER ++
Sbjct: 9 KRLLDLSRQADRKGIVLFSDFLNLNELNIYHQS-EKLFATRTECFGGIPCAER-QMIAFL 66
Query: 142 PEALTSDPDI-VAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIIL--QNKGFL 196
P+AL D + ++AL IT + + H D LGS++ G+ R K+GDI++ Q L
Sbjct: 67 PDALYYDWEYPISALKITPAYPKFAEKLGHRDILGSLMQLGVDRCKLGDILVGEQEAYLL 126
Query: 197 CS 198
C
Sbjct: 127 CE 128
>gi|310642972|ref|YP_003947730.1| RNA-binding s4 domain-containing protein [Paenibacillus polymyxa
SC2]
gi|309247922|gb|ADO57489.1| RNA-binding S4 domain-containing protein [Paenibacillus polymyxa
SC2]
gi|392303787|emb|CCI70150.1| putative RNA-binding protein ylmH [Paenibacillus polymyxa M1]
Length = 260
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 86 EMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
E A + E +DFL P + E++ + E ++ GGY +ER R +
Sbjct: 22 EWISHAGAYHEQKLTDFLDPRQQYILETLASKEDKVTIRV--DGGYTASERKRALIAPDY 79
Query: 144 ALTSDPDI-VAALSITGN-FGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ D ++ + LSI+ + HGD+LG+ILG GI R KIGDI + + G
Sbjct: 80 SYLDDEEMGIQVLSISSDDHKINTLEHGDYLGAILGLGIKRGKIGDIHVLDDG 132
>gi|417810107|ref|ZP_12456787.1| ribosomal protein S4e [Lactobacillus salivarius GJ-24]
gi|335349979|gb|EGM51477.1| ribosomal protein S4e [Lactobacillus salivarius GJ-24]
Length = 262
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
FL P + + K DVK GGY AER R ++ +P D D + + I
Sbjct: 38 FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-AIFYPSYYEVQDDDFNLELIMIKY 96
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK--GFLCS 198
F HG LG++ +G+ RE IGDII QN FLC
Sbjct: 97 PVKFTSLIHGQILGTLANSGLDREVIGDIIEQNDTWQFLCE 137
>gi|123969089|ref|YP_001009947.1| S4-like domain-containing protein [Prochlorococcus marinus str.
AS9601]
gi|123199199|gb|ABM70840.1| Uncharacterized conserved protein, contains S4-like
domain-containing protein [Prochlorococcus marinus str.
AS9601]
Length = 263
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DL + + + N +E + ++ +A A E + F + V +E + E L D K
Sbjct: 3 DLKEILINANYKKETEELINIANLAYKHWETYWTGFNSTYVCEEILKDFENLNDFKFFIY 62
Query: 127 GGYPQAERCRL------SVGHPEALTSD-PDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
GG+ ++R R+ ++ +AL S+ P + I GNF F + DF ++ G
Sbjct: 63 GGFSSSQRSRIACFRGDNIPEEDALKSNFP--AQGIKINGNFLFDNATQDDFRSLLIENG 120
Query: 180 IAREKIGDI 188
+ + K+GDI
Sbjct: 121 VNQIKVGDI 129
>gi|238855267|ref|ZP_04645586.1| cell division protein [Lactobacillus jensenii 269-3]
gi|260664626|ref|ZP_05865478.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
SJ-7A-US]
gi|313471915|ref|ZP_07812407.1| cell-division protein [Lactobacillus jensenii 1153]
gi|238832159|gb|EEQ24477.1| cell division protein [Lactobacillus jensenii 269-3]
gi|239529160|gb|EEQ68161.1| cell-division protein [Lactobacillus jensenii 1153]
gi|260561691|gb|EEX27663.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
SJ-7A-US]
Length = 274
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 75 KNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQA 132
KN E++ + + +E + ++FL P + + L +LA Q GGY +A
Sbjct: 21 KNDNEDISQLSGYLMQICYGKEAVLTNFLDPG----ARVDLRELAQSDFYIQEFGGYDKA 76
Query: 133 ERCRLSVGHPEALTSDPDIVAAL-SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
E+CR+ + + + +L IT N F +H LG++LG+G++ +GDII
Sbjct: 77 EKCRVIISNDWEYKDVENFQFSLIKITYNHKFASITHSQILGTLLGSGLSPASLGDIITD 136
Query: 192 NKG 194
KG
Sbjct: 137 GKG 139
>gi|164686337|ref|ZP_02210367.1| hypothetical protein CLOBAR_02775 [Clostridium bartlettii DSM
16795]
gi|164601939|gb|EDQ95404.1| S4 domain protein [Clostridium bartlettii DSM 16795]
Length = 179
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ + I GNF F+ SH D+LG++L GI REKIGDII+ +
Sbjct: 10 LKVIQIEGNFKFKSISHRDYLGALLNLGIKREKIGDIIIHD 50
>gi|152976258|ref|YP_001375775.1| RNA-binding S4 domain-containing protein [Bacillus cytotoxicus NVH
391-98]
gi|152025010|gb|ABS22780.1| RNA-binding S4 domain protein [Bacillus cytotoxicus NVH 391-98]
Length = 257
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE R +V +DFL P + + + DV G P+AER R ++
Sbjct: 15 VDKVLEWERAVEEYHQVKLTDFLDPRQQQIVTTIVGQQGDVSLQFNGAAPKAERKR-ALI 73
Query: 141 HPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ AL + V L I F H LG+++ G+ REK GDI +Q
Sbjct: 74 YPDYLALNEEEFQVEVLEIDYPSKFYTLEHRQILGALMSLGLKREKYGDIFIQE 127
>gi|390453149|ref|ZP_10238677.1| RNA-binding s4 domain-containing protein [Paenibacillus peoriae
KCTC 3763]
Length = 260
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 100 SDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALS 156
+DFL P L E++ + E ++ GGY +ER R + + D D+ + LS
Sbjct: 36 TDFLDPRQLYILETLSSKEDKVTIRL--DGGYEASERKRALIAPDYSYLDDEDMGIRVLS 93
Query: 157 ITGNF-GFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
I+ + HGD+LG+ILG GI R KIGDI + + G
Sbjct: 94 ISSDDQKIGTLEHGDYLGAILGLGIKRGKIGDIHVLDDG 132
>gi|417788480|ref|ZP_12436163.1| hypothetical protein, contains S4-like RNA binding domain
[Lactobacillus salivarius NIAS840]
gi|334308657|gb|EGL99643.1| hypothetical protein, contains S4-like RNA binding domain
[Lactobacillus salivarius NIAS840]
Length = 262
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
FL P + + K DVK GGY AER R ++ +P D D + + I
Sbjct: 38 FLNPREQYIAQSLIHKNQDVKVSFSGGYENAERKR-AIFYPSYYEVQDDDFNLELIMIKY 96
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK--GFLCS 198
F +HG LG++ +G+ RE IGDII +N FLC
Sbjct: 97 PVKFTSLTHGQILGTLANSGLDREVIGDIIERNDTWQFLCE 137
>gi|290969124|ref|ZP_06560652.1| S4 domain protein [Megasphaera genomosp. type_1 str. 28L]
gi|335049281|ref|ZP_08542281.1| S4 domain protein [Megasphaera sp. UPII 199-6]
gi|290780844|gb|EFD93444.1| S4 domain protein [Megasphaera genomosp. type_1 str. 28L]
gi|333763554|gb|EGL40998.1| S4 domain protein [Megasphaera sp. UPII 199-6]
Length = 261
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV--- 139
++E+A R SDF++P ++ + DV GGY AER R++
Sbjct: 22 RLIELAEYVCKGRPYAVSDFVSPGAVQIGETICAQDTDVHLQCDGGYEGAERVRMAFVRN 81
Query: 140 GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
G+ A+ + A + + ++ +H D LGS++G G+ R K GDII+ G
Sbjct: 82 GYEGAVDFS---IRACRLVWDSRYRLLTHRDVLGSLMGLGVERAKFGDIIMAEDG 133
>gi|338813355|ref|ZP_08625484.1| RNA-binding S4 domain protein [Acetonema longum DSM 6540]
gi|337274714|gb|EGO63222.1| RNA-binding S4 domain protein [Acetonema longum DSM 6540]
Length = 263
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E +L++A A ++ SDFL P + + + ++ + GGYP AER + +
Sbjct: 18 ELAAKLLDIAEAALRYQKYKISDFLDPFGISVAETIIAHYGRLRLASDGGYPGAERVKAA 77
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ + + ++ L++ + + SH D LG++ G G+ RE IGDII
Sbjct: 78 FVTNDYMGTIDFGISVLAVQYDSRYYSLSHRDVLGALTGAGLKREVIGDII 128
>gi|402311264|ref|ZP_10830212.1| hypothetical protein HMPREF1142_0617 [Eubacterium sp. AS15]
gi|400365410|gb|EJP18462.1| hypothetical protein HMPREF1142_0617 [Eubacterium sp. AS15]
Length = 262
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 100 SDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSI 157
+DF+ P K + L +D + GG ++ER +L V +P ++ V L +
Sbjct: 39 TDFMNPYEQKVFISILNAFSDDISYTLFGGAEKSER-KLFVIYPVYHMNEIKCPVKLLRL 97
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
GNF F+ SH D LG+++ GI REK GDI L
Sbjct: 98 YGNFKFEKISHRDCLGALMSMGIVREKTGDIYL 130
>gi|293400860|ref|ZP_06645005.1| YlmH protein [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305886|gb|EFE47130.1| YlmH protein [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 251
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA-DVKAVAQGGYPQAERCRLSV 139
VK I ++ RR ++ + F P E + L + GGY AERCR ++
Sbjct: 15 VKRIYDLIDLMERRRRIVVTPFFAPD---ECNICDAILGHQIPYRKSGGYQGAERCRYAL 71
Query: 140 GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFL 196
E +D I L T + F +H D LG+IL GI REKIGD+I+++ +
Sbjct: 72 LPYEDELADLKI-TILKATYSPQFGKLAHPDVLGAILNLGIEREKIGDLIVKDNELI 127
>gi|390935121|ref|YP_006392626.1| RNA-binding S4 domain-containing protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570622|gb|AFK87027.1| RNA-binding S4 domain protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 247
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL----TSDPDIVAAL 155
+DFL+ K + + K D+ GG+ +AER +++ +P L +++ +
Sbjct: 24 TDFLSMKDQKILLKLIAKHDDIDCRFDGGFKEAER-KIACIYPSLLPIYDGEHFNVIKGI 82
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
I G+ SH D LGS+LG GI REKIGDII
Sbjct: 83 RINGDL--TKLSHRDVLGSLLGLGIKREKIGDII 114
>gi|313901208|ref|ZP_07834696.1| S4 domain protein [Clostridium sp. HGF2]
gi|346314197|ref|ZP_08855718.1| hypothetical protein HMPREF9022_01375 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|373121511|ref|ZP_09535379.1| hypothetical protein HMPREF0982_00308 [Erysipelotrichaceae
bacterium 21_3]
gi|422327527|ref|ZP_16408554.1| hypothetical protein HMPREF0981_01874 [Erysipelotrichaceae
bacterium 6_1_45]
gi|312954166|gb|EFR35846.1| S4 domain protein [Clostridium sp. HGF2]
gi|345906555|gb|EGX76279.1| hypothetical protein HMPREF9022_01375 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|371663367|gb|EHO28557.1| hypothetical protein HMPREF0981_01874 [Erysipelotrichaceae
bacterium 6_1_45]
gi|371665529|gb|EHO30694.1| hypothetical protein HMPREF0982_00308 [Erysipelotrichaceae
bacterium 21_3]
Length = 250
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
GGY QAERCRL+ E P V L ++ F +H D LG+++ GI R+K G
Sbjct: 59 GGYAQAERCRLAFLPWEEEVQIP--VLHLKAKISYSFGKLAHRDVLGALMNLGIERDKTG 116
Query: 187 DIILQN 192
D+I++
Sbjct: 117 DLIVEQ 122
>gi|374324832|ref|YP_005077961.1| hypothetical protein HPL003_25110 [Paenibacillus terrae HPL-003]
gi|357203841|gb|AET61738.1| hypothetical protein HPL003_25110 [Paenibacillus terrae HPL-003]
Length = 260
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 55/122 (45%), Gaps = 10/122 (8%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD----VKAVAQGGYPQAER 134
E V E A + E +DFL P + LE LA V GGY +ER
Sbjct: 15 EYVDRASEWISHAGAYHEQKLTDFLDP----RQLYILETLASKEDKVTIRVDGGYEASER 70
Query: 135 CRLSVGHPEALTSDPDI-VAALSITGN-FGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
R + + ++ + LS+T + HGD+LG+ILG GI R KIGDI + +
Sbjct: 71 KRALIAPDYSYVDGENMGIQVLSVTSDDHKISTLEHGDYLGAILGLGIKRGKIGDIHVLD 130
Query: 193 KG 194
G
Sbjct: 131 DG 132
>gi|33865067|ref|NP_896626.1| hypothetical protein SYNW0531 [Synechococcus sp. WH 8102]
gi|33638751|emb|CAE07046.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 291
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E + +L++A + + SDFL P+ +E++ L L+++ GG+ AERCRL
Sbjct: 48 EGLAALLDLAEQVLRTWQPSWSDFLDAPLQEEALKRLSDLSELAWHRDGGHQGAERCRLL 107
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
+ + L I GNF F P + D ++ G E +GD+ ++
Sbjct: 108 CHRRDQPVESTPPIQGLLIEGNFLFDPLTPEDLRSALHNMGAQPEDLGDLWVR 160
>gi|418961536|ref|ZP_13513422.1| RNA binding protein [Lactobacillus salivarius SMXD51]
gi|380344068|gb|EIA32415.1| RNA binding protein [Lactobacillus salivarius SMXD51]
Length = 262
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL-TSDPDI-VAALSITG 159
FL P + + K DVK GGY ER R ++ +P D D + + I
Sbjct: 38 FLNPREQYIAQSLIHKNQDVKVSFSGGYENTERKR-AIFYPSYYEVQDDDFNLELIMIKY 96
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK--GFLCS 198
F +HG LG++ +G+ RE IGDII QN FLC
Sbjct: 97 PAKFTSLTHGQILGTLANSGLDREVIGDIIEQNDTWQFLCE 137
>gi|373106343|ref|ZP_09520646.1| hypothetical protein HMPREF9623_00310 [Stomatobaculum longum]
gi|371652718|gb|EHO18126.1| hypothetical protein HMPREF9623_00310 [Stomatobaculum longum]
Length = 253
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
+L+++R+ R HS FLT + + L +A ++ ++ G + AER ++
Sbjct: 11 NRLLDLSRQCEDRNVPTHSYFLTVEEQRLAAQCLPNVAGIRMISDGVFCDAER-KVLFFL 69
Query: 142 PEALTSDPD---IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL-QNKGFLC 197
P L P+ I L+ +P H DFLG+++G GI RE +GD+++ +NK L
Sbjct: 70 PSYLEEPPEDELICLELAPRAPKFAEPLGHRDFLGALMGLGIRREMLGDLMVTENKAQLV 129
Query: 198 S 198
+
Sbjct: 130 A 130
>gi|428279135|ref|YP_005560870.1| hypothetical protein BSNT_02544 [Bacillus subtilis subsp. natto
BEST195]
gi|291484092|dbj|BAI85167.1| hypothetical protein BSNT_02544 [Bacillus subtilis subsp. natto
BEST195]
Length = 257
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + +DFL P +E ++ A+ ADV GGY +AER R +
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-A 71
Query: 139 VGHPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ +PE +T P++ + A ++ F H LG+++G G+ R+K GDI+
Sbjct: 72 ILYPEYIT--PEVSDFELQAFNVCYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF 125
>gi|410458071|ref|ZP_11311835.1| RNA-binding S4 domain-containing protein [Bacillus azotoformans LMG
9581]
gi|409931896|gb|EKN68870.1| RNA-binding S4 domain-containing protein [Bacillus azotoformans LMG
9581]
Length = 257
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCR--LS 138
+ I+E + ++ DF P + + +VK GGY QAER R L
Sbjct: 15 IDQIIEWREQVANEYTYKLLDFYDPREIDIVQRIIGSKEEVKCAFWGGYDQAERKRAILY 74
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ E D DIV SI F H LGS +G G+ R K GDII+
Sbjct: 75 PEYYEVQNEDFDIVV-FSINFPSKFVTLDHRKVLGSTMGLGLKRSKFGDIII 125
>gi|373469182|ref|ZP_09560390.1| S4 domain protein [Lachnospiraceae bacterium oral taxon 082 str.
F0431]
gi|371764861|gb|EHO53227.1| S4 domain protein [Lachnospiraceae bacterium oral taxon 082 str.
F0431]
Length = 249
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSVGH 141
L++AR A + V HS FL M +L +VK++ GGY +AER C
Sbjct: 13 LDLARNAYFKNIVTHSTFLNLYEQTIFEMIQNELPNVKSIMFGGYSEAERKVVCFYCDEK 72
Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
PE + + + F +H DFLG+I+ GI R IGDI
Sbjct: 73 PEF--DMLEYIRVAPVNKKFA-DELTHRDFLGAIMNLGIERHMIGDI 116
>gi|321315306|ref|YP_004207593.1| shape determination protein [Bacillus subtilis BSn5]
gi|449094234|ref|YP_007426725.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis XF-1]
gi|320021580|gb|ADV96566.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis BSn5]
gi|449028149|gb|AGE63388.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis XF-1]
Length = 257
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + +DFL P +E ++ A+ ADV GGY +AER R +
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-A 71
Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ +PE +T SD ++ A ++ F H LG+++G G+ R+K GDI+
Sbjct: 72 ILYPEYITPEESDFEL-QAFNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF 125
>gi|373451744|ref|ZP_09543663.1| hypothetical protein HMPREF0984_00705 [Eubacterium sp. 3_1_31]
gi|371967965|gb|EHO85432.1| hypothetical protein HMPREF0984_00705 [Eubacterium sp. 3_1_31]
Length = 251
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA-DVKAVAQGGYPQAERCRLSV 139
VK I ++ RR ++ + F P E + L + GGY AERCR ++
Sbjct: 15 VKRIYDLIDLMERRRRIVVTPFFAPD---ECNICDAILGHQIPYGKSGGYQGAERCRYAL 71
Query: 140 GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFL 196
E +D I L T + F +H D LG+IL GI REKIGD+I+++ +
Sbjct: 72 LPYEDELADLKI-TILKATYSPQFGKLAHPDVLGAILNLGIEREKIGDLIVKDNELI 127
>gi|260587701|ref|ZP_05853614.1| RNA-binding S4 [Blautia hansenii DSM 20583]
gi|331084008|ref|ZP_08333115.1| hypothetical protein HMPREF0992_02039 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260541966|gb|EEX22535.1| RNA-binding S4 [Blautia hansenii DSM 20583]
gi|330402370|gb|EGG81940.1| hypothetical protein HMPREF0992_02039 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 250
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD--VKAVAQGGYPQAERCRLSV 139
K +LE+++++ R + +SDFL + +++++ +D V+ + GGY AER +++
Sbjct: 9 KRMLELSKKSYYRGILTYSDFL--DLNEQNILHSLSFSDTGVQVLLFGGYETAER-QMAA 65
Query: 140 GHPEALTSDPDI-VAALSITG-NFGFQPC-SHGDFLGSILGTGIAREKIGDIILQNKG 194
+A D +A + I+ N F +H D+LGSIL GI R KIGDI+++ G
Sbjct: 66 FVSDAFCCKEDYPIACIKISPLNRKFSDTLTHRDYLGSILNLGIERCKIGDILVEEDG 123
>gi|225572136|ref|ZP_03781000.1| hypothetical protein RUMHYD_00430 [Blautia hydrogenotrophica DSM
10507]
gi|225040402|gb|EEG50648.1| S4 domain protein [Blautia hydrogenotrophica DSM 10507]
Length = 254
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
DK+ + E K + ++A RA +R VL++DFL L + + V GGY AE
Sbjct: 2 DKDLLFE-KRMKDLASRAYNRDIVLYTDFLNLDELHKIHSLISGSLPVTVCTFGGYDLAE 60
Query: 134 RCRLSVGHPEALTSDPDIVAALSITGNFGFQPCS--------HGDFLGSILGTGIAREKI 185
R +++ P+AL+ + + + I QP S H D+LG++L G+ R +
Sbjct: 61 R-QMAAFLPDALSYLMEEILSYPIVC-LKIQPLSLKFSEKLSHRDYLGALLNLGLERSML 118
Query: 186 GDIILQNKGFLC 197
GD+++ G C
Sbjct: 119 GDLLIDETGAYC 130
>gi|392426957|ref|YP_006467951.1| hypothetical protein Desaci_3738 [Desulfosporosinus acidiphilus
SJ4]
gi|391356920|gb|AFM42619.1| hypothetical protein Desaci_3738 [Desulfosporosinus acidiphilus
SJ4]
Length = 265
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAVA 125
+LK +K A H+L+ R + + FL+ + + E ++ E+LA +
Sbjct: 9 MLKFWSEKEAYLSAAHLLDQMDAVLHRNSMQVTTFLSFAMREWAEGILNKEQLA---YLL 65
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQP---CSHGDFLGSILGTGIAR 182
+GG+P AER R+ +G E D A LSI P H LGS++G GI R
Sbjct: 66 EGGFPDAERVRIVIGSREETLDSAD--ANLSILEVLPANPHTQLEHRQILGSLIGLGIGR 123
Query: 183 EKIGDI 188
E +GDI
Sbjct: 124 EVLGDI 129
>gi|352095856|ref|ZP_08956803.1| photosystem II S4 domain protein [Synechococcus sp. WH 8016]
gi|351677212|gb|EHA60361.1| photosystem II S4 domain protein [Synechococcus sp. WH 8016]
Length = 242
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 99 HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSI 157
S FL+ +L+++ L LA++K GGYP AER RL + H + +P +A L++
Sbjct: 19 WSPFLSALMLEDANQ-LGALAELKISRDGGYPGAERKRLLIQHATSPEPEPPCPLAGLNV 77
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
GNF F P S + ++ G G+ +GD+ ++
Sbjct: 78 EGNFLFDPTSPDEMRLALQGIGVDEAALGDLWIR 111
>gi|374997216|ref|YP_004972715.1| hypothetical protein Desor_4799 [Desulfosporosinus orientis DSM
765]
gi|357215582|gb|AET70200.1| hypothetical protein, contains S4-like domain [Desulfosporosinus
orientis DSM 765]
Length = 265
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 12/139 (8%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDF--LTPPV---LKESMMALEKLADVK 122
+LK +K+A E H+L+ VLH LTP + ++E + ++ + V+
Sbjct: 9 VLKFWDEKDARLEAAHLLDQLNL------VLHKGIKQLTPFLSLAMREWLESIIRKEQVE 62
Query: 123 AVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 181
A+GG+P+AER R+ +G E L + +A + + H LGS++G GI
Sbjct: 63 YRAEGGFPEAERVRIFMGPRGEWLDTADTGMALIWVMPTDSRIQLQHRQILGSLMGLGIR 122
Query: 182 REKIGDIILQNKGFLCSGC 200
R+ GDI KGF +
Sbjct: 123 RDVFGDIQPGQKGFYIAAA 141
>gi|430755976|ref|YP_007209756.1| hypothetical protein A7A1_0484 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430020496|gb|AGA21102.1| Hypothetical protein YlmH [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 257
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + +DFL P +E ++ A+ ADV GGY +AER R +
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFSGGYNRAERKR-A 71
Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ +PE +T SD ++ A ++ F H LG+++G G+ R+K GDI+
Sbjct: 72 ILYPEYITPEESDFEL-QAFNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF 125
>gi|423682084|ref|ZP_17656923.1| RNA-binding protein [Bacillus licheniformis WX-02]
gi|383438858|gb|EID46633.1| RNA-binding protein [Bacillus licheniformis WX-02]
Length = 258
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + + +DFL P V+ +S++ + +V+ GG+P+AER R +
Sbjct: 16 INQALEWKRIVAEQYRMKLTDFLDPREQVILQSVIG--QSDEVRLEFFGGFPEAERKR-A 72
Query: 139 VGHPE-ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN--KG 194
V PE A S D + A + F H + LGS++G G+ R+K GD+I +
Sbjct: 73 VLFPEYAEPSAEDFQLQAWEVIYPQKFASIEHRELLGSLMGIGLKRQKFGDLIFSDGTWQ 132
Query: 195 FLCS 198
F+CS
Sbjct: 133 FICS 136
>gi|384175283|ref|YP_005556668.1| S4 domain protein [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349594507|gb|AEP90694.1| S4 domain protein [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 257
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + +DFL P +E ++ A+ ADV GGY +AER R +
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFSGGYNRAERKR-A 71
Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ +PE +T SD ++ A ++ F H LG+++G G+ R+K GDI+
Sbjct: 72 ILYPEYITPEESDFEL-QAFNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF 125
>gi|168334455|ref|ZP_02692626.1| RNA-binding S4 [Epulopiscium sp. 'N.t. morphotype B']
Length = 249
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
GGYP A R + + + +P + + + FG + +H DFLGSIL GI+R KIG
Sbjct: 55 GGYPXASRSIVCITPFDEPLVNPIAILKIDVKTGFG-KELTHRDFLGSILSLGISRAKIG 113
Query: 187 DIILQNKG 194
DI++ + G
Sbjct: 114 DIVVTSFG 121
>gi|188588620|ref|YP_001921580.1| S4 domain-containing protein [Clostridium botulinum E3 str. Alaska
E43]
gi|188498901|gb|ACD52037.1| S4 domain protein [Clostridium botulinum E3 str. Alaska E43]
Length = 254
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
V +DF +P K E ++ K +G + +ER +S + + P + L
Sbjct: 34 VFGNDFYSPKTWKWFKENCE-TSEFKVTCEGIFKDSERKMISFNN---IYDIPFPIKLLK 89
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ G F H DFLG IL GI R KIGD+I+++
Sbjct: 90 VQGKSKFSNLEHKDFLGGILSLGIERNKIGDLIVED 125
>gi|52080143|ref|YP_078934.1| RNA-binding protein [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319646078|ref|ZP_08000308.1| YlmH protein [Bacillus sp. BT1B_CT2]
gi|404489031|ref|YP_006713137.1| RNA-binding protein YlmH [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52003354|gb|AAU23296.1| RNA-binding protein [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52348021|gb|AAU40655.1| putative RNA-binding protein YlmH [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317391828|gb|EFV72625.1| YlmH protein [Bacillus sp. BT1B_CT2]
Length = 258
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + + +DFL P V+ +S++ + +V+ GG+P+AER R +
Sbjct: 16 IDQALEWKRIVAEQYRMKLTDFLDPREQVILQSVIG--QSDEVRLEFFGGFPEAERKR-A 72
Query: 139 VGHPE-ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN--KG 194
V PE A S D + A + F H + LGS++G G+ R+K GD+I +
Sbjct: 73 VLFPEYAEPSAEDFQLQAWEVIYPQKFASIEHRELLGSLMGIGLKRQKFGDLIFSDGTWQ 132
Query: 195 FLCS 198
F+CS
Sbjct: 133 FICS 136
>gi|116073646|ref|ZP_01470908.1| RNA-binding S4 [Synechococcus sp. RS9916]
gi|116068951|gb|EAU74703.1| RNA-binding S4 [Synechococcus sp. RS9916]
Length = 263
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT----SDPDIVAALSI 157
F++ P+ ++++ L L +++ A GG P+AER RL + E T P V L +
Sbjct: 39 FVSAPLREDAVQRLAVLTELQIHADGGRPEAERQRLLISRCEGGTVPQEEHPLPVMGLEV 98
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ-NKG--FLCS 198
GNF F P D +IL GI +GD+ ++ ++G LC+
Sbjct: 99 EGNFLFDPVDPHDMRAAILELGIEAGHLGDLWIRGDRGAQLLCT 142
>gi|306820242|ref|ZP_07453884.1| conserved hypothetical protein [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551739|gb|EFM39688.1| conserved hypothetical protein [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 262
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSVGHPEALTSDPDI-VAALSI 157
+DF+ P K + L +D + A GG ++ER ++ V +P + V L +
Sbjct: 39 TDFMNPYEQKVFISILNAFSDEISYALFGGDEKSER-KIFVIYPVYQMDEIKCPVKLLRL 97
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
GNF F+ SH D LG+++ GI REK GDI L
Sbjct: 98 YGNFKFEKISHRDCLGALMSMGIVREKTGDIYL 130
>gi|153814895|ref|ZP_01967563.1| hypothetical protein RUMTOR_01110 [Ruminococcus torques ATCC 27756]
gi|317500408|ref|ZP_07958632.1| RNA-binding S4 protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089585|ref|ZP_08338484.1| hypothetical protein HMPREF1025_02067 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438901|ref|ZP_08618522.1| hypothetical protein HMPREF0990_00916 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145847926|gb|EDK24844.1| S4 domain protein [Ruminococcus torques ATCC 27756]
gi|316898163|gb|EFV20210.1| RNA-binding S4 protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|330404953|gb|EGG84491.1| hypothetical protein HMPREF1025_02067 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336017391|gb|EGN47153.1| hypothetical protein HMPREF0990_00916 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 266
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 65/146 (44%), Gaps = 35/146 (23%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ----GGYPQAERCRL 137
K +E++R A R + +SDFL L E + L L Q GGY AER ++
Sbjct: 15 KRFIELSRNAYQRDFITYSDFLN---LNEQNI-LHTLPKENLFTQILTFGGYGMAER-QM 69
Query: 138 SVGHPEAL-------TSDPDIV-------AALSITGNFGFQPCSHGDFLGSILGTGIARE 183
+ P+AL DP ++ L + F + +H D+LGSIL GI R
Sbjct: 70 AAFIPDALYLRCGKKELDPALIRYPFKALQVLPLNRKFS-EDLTHRDYLGSILNLGIDRS 128
Query: 184 KIGDIILQNK-----------GFLCS 198
K GDI+++N FLCS
Sbjct: 129 KTGDILIENNTAILFAHDDIVSFLCS 154
>gi|374583009|ref|ZP_09656103.1| hypothetical protein DesyoDRAFT_4572 [Desulfosporosinus youngiae
DSM 17734]
gi|374419091|gb|EHQ91526.1| hypothetical protein DesyoDRAFT_4572 [Desulfosporosinus youngiae
DSM 17734]
Length = 265
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSITGN 160
FL+ + S L K+ ++ +A+GG+P+AER R+ +G E L S+ ++ LS+
Sbjct: 43 FLSLAMRDWSEAVLHKV-HLEHLAEGGFPEAERVRILIGSRGEILASEDAQISILSVRPK 101
Query: 161 FGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFLCS 198
+H LGS++G G R+ GDI + GF +
Sbjct: 102 DSRAQLAHPQILGSLMGLGFRRDVFGDIQVGRSGFYVA 139
>gi|423457918|ref|ZP_17434715.1| hypothetical protein IEI_01058 [Bacillus cereus BAG5X2-1]
gi|401148302|gb|EJQ55795.1| hypothetical protein IEI_01058 [Bacillus cereus BAG5X2-1]
Length = 255
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G P AER R ++
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATPHAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|47570312|ref|ZP_00240959.1| S4 domain protein [Bacillus cereus G9241]
gi|47553021|gb|EAL11425.1| S4 domain protein [Bacillus cereus G9241]
Length = 255
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G P AER R ++
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATPHAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|423073771|ref|ZP_17062508.1| S4 domain protein [Desulfitobacterium hafniense DP7]
gi|361855393|gb|EHL07369.1| S4 domain protein [Desulfitobacterium hafniense DP7]
Length = 265
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 69 LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAVAQ 126
LK +K E H+L++ A +R+ + + FL + E ++ E LA +
Sbjct: 10 LKFWTEKEMRLEGAHLLDLCNEALRKRKPVWTPFLGQALANWLEGILQREGLA---FRLE 66
Query: 127 GGYPQAERCR-LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GG+ AER R L V P+ L + P + AL T H LGS++G G+ RE I
Sbjct: 67 GGFSDAERVRFLVVADPDVLDNVPSEIRALQATPTDPRGKLDHRQVLGSLMGLGLKREVI 126
Query: 186 GDIILQNK 193
GDI L +
Sbjct: 127 GDIRLTEQ 134
>gi|399923764|ref|ZP_10781122.1| RNA-binding cell division protein [Peptoniphilus rhinitidis 1-13]
Length = 260
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 78 IEEVKHILEMARRASSRREV------------LHSDFLTPPVLKESMMALEKLAD-VKAV 124
I+ V HI + R S R+ + + ++FL P + S+ L + D +
Sbjct: 7 IDLVNHINRVEDRTSIRQVIDKIESVINNHITISTNFLNPHEINLSISILNRFKDKISYE 66
Query: 125 AQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY +E + + D D + AL N + H D LG++L I R K
Sbjct: 67 IDGGYEDSEASLIYIYPSYKYERDIDDIVALKFKSN---EKIKHSDVLGALLALSIDRRK 123
Query: 185 IGDIILQNK 193
IGDI++ K
Sbjct: 124 IGDILIGKK 132
>gi|323140386|ref|ZP_08075316.1| S4 domain protein [Phascolarctobacterium succinatutens YIT 12067]
gi|322415142|gb|EFY05931.1| S4 domain protein [Phascolarctobacterium succinatutens YIT 12067]
Length = 261
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
+L++A A+ R+ S+FL P + + +V+ + GG+ AER + + +
Sbjct: 23 LLDLAEGANKSRKFRVSEFLDPHAYNVAEIIAANYENVRLESDGGFSNAERVKAAF-VAD 81
Query: 144 ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
PD +A + + SH D LG+ +GTG RE +GDI+ +G
Sbjct: 82 DFYGQPDFGMAYFLAAWDKRYYDLSHRDILGAFMGTGCKREALGDIVFVPEG 133
>gi|148240319|ref|YP_001225706.1| hypothetical protein SynWH7803_1983 [Synechococcus sp. WH 7803]
gi|147848858|emb|CAK24409.1| Conserved hypothetical protein [Synechococcus sp. WH 7803]
Length = 259
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 83 HILEMARRASSRREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCR 136
H MAR EVL S FLT P L+E+ LE LA+++ V GG AERCR
Sbjct: 14 HRAVMARLLDQAEEVLRTWQPSWSPFLTGPELEEAG-KLEALAELRMVRDGGREGAERCR 72
Query: 137 LSVG-HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
L + + ++ + L + GNF F D +++ ++ + IGD+ L+
Sbjct: 73 LQLSRRDQEADAESAPLCGLRLEGNFLFDRAEPDDMRQALMQLDVSADSIGDLWLR 128
>gi|304316676|ref|YP_003851821.1| RNA-binding S4 domain-containing protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778178|gb|ADL68737.1| RNA-binding S4 domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 246
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-- 143
++A+ + ++DFL+ K + + + D+ GG+ AER +++ +P+
Sbjct: 10 DIAKWVQKNKRDRYTDFLSLRDQKILLKLMTQFDDINCGFIGGFDAAER-KIAHIYPKFR 68
Query: 144 -ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
A+ + ++A+ I G+ SH D LGSILG GI R+K+GDII
Sbjct: 69 NAVDAYKAPISAIRINGDLS--KLSHRDVLGSILGLGIKRDKVGDII 113
>gi|319937139|ref|ZP_08011546.1| S4 RNA-binding protein [Coprobacillus sp. 29_1]
gi|319807505|gb|EFW04098.1| S4 RNA-binding protein [Coprobacillus sp. 29_1]
Length = 250
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 10/128 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA--DVKAVAQGGYPQAERCRLS 138
VK IL+ +A + + ++ + FL P E + + + D++ QGG+ AE RL
Sbjct: 12 VKKILDCRYQALNHQRMILTAFLNPH---EQNIVYKVIGTQDLQIHCQGGFKNAENQRLI 68
Query: 139 V--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFL 196
+ E L+ D +IV + + + F H D LG+++ GI RE IGDI ++ F
Sbjct: 69 ICPDFYEVLSEDFEIVV-VEVLYHQQFGKLQHRDVLGALMNLGIKRECIGDIYDADRLFF 127
Query: 197 CSGCLQYT 204
C Q T
Sbjct: 128 --ACTQQT 133
>gi|260887802|ref|ZP_05899065.1| S4 domain protein [Selenomonas sputigena ATCC 35185]
gi|330838698|ref|YP_004413278.1| RNA-binding S4 domain protein [Selenomonas sputigena ATCC 35185]
gi|260862478|gb|EEX76978.1| S4 domain protein [Selenomonas sputigena ATCC 35185]
gi|329746462|gb|AEB99818.1| RNA-binding S4 domain protein [Selenomonas sputigena ATCC 35185]
Length = 261
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
GGY AER R H + + +A + F SH D LG+I+G G+ RE IG
Sbjct: 66 GGYAGAERQRAVFQHEDFRGTPSWEIAVVEAVWKDAFAHISHRDVLGAIMGLGVEREIIG 125
Query: 187 DIILQNKG-----------FLCSGCLQY 203
DI +Q FL + C+Q+
Sbjct: 126 DIQIQQGAARIVTVENMADFLLTNCVQF 153
>gi|423401260|ref|ZP_17378433.1| hypothetical protein ICW_01658 [Bacillus cereus BAG2X1-2]
gi|423478036|ref|ZP_17454751.1| hypothetical protein IEO_03494 [Bacillus cereus BAG6X1-1]
gi|401654250|gb|EJS71793.1| hypothetical protein ICW_01658 [Bacillus cereus BAG2X1-2]
gi|402428198|gb|EJV60295.1| hypothetical protein IEO_03494 [Bacillus cereus BAG6X1-1]
Length = 255
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G P AER R ++
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATPHAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLEVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|402574193|ref|YP_006623536.1| hypothetical protein Desmer_3829 [Desulfosporosinus meridiei DSM
13257]
gi|402255390|gb|AFQ45665.1| hypothetical protein Desmer_3829 [Desulfosporosinus meridiei DSM
13257]
Length = 265
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 12/152 (7%)
Query: 54 IRHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ES 111
+RHLI +LK DK A E H+L+ S+ + FL+ + ES
Sbjct: 1 MRHLIDR------SVLKYWVDKEARLEAAHLLDQVNLVLSKEFQQVTPFLSFAMRDWIES 54
Query: 112 MMALEKLADVKAVAQGGYPQAERCRLSVGHP-EALTSDPDIVAALSITGNFGFQPCSHGD 170
++ E LA +A+GG P AER R+ +G + + + ++ LS+ H
Sbjct: 55 VLRKEHLA---YLAEGGLPDAERVRIIMGAKGDIMKPEQAEISLLSVRATNLRAKLEHHQ 111
Query: 171 FLGSILGTGIAREKIGDIILQNKGFLCSGCLQ 202
LGS++G G+ R+ GDI GF + L+
Sbjct: 112 ILGSLMGLGLRRDLFGDIQAGQSGFYVATTLE 143
>gi|296331117|ref|ZP_06873591.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305674272|ref|YP_003865944.1| shape determination protein [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296151761|gb|EFG92636.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305412516|gb|ADM37635.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis subsp. spizizenii str. W23]
Length = 257
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 100 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAA 154
+DFL P +E ++ A+ ADV GGY +AER R ++ +PE LT SD ++ A
Sbjct: 35 TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-AILYPEYLTPEESDFEL-QA 89
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
++ F H LG+++G G+ R+K GDI+
Sbjct: 90 FNVRYAEKFVSVEHRSLLGALMGIGLKRQKFGDIVF 125
>gi|427704338|ref|YP_007047560.1| photosystem II S4 domain-containing protein [Cyanobium gracile PCC
6307]
gi|427347506|gb|AFY30219.1| photosystem II S4 domain protein [Cyanobium gracile PCC 6307]
Length = 257
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLL+G EE+ + +A A E S FL V +E+ L L+++ ++
Sbjct: 6 DLLEG---SRHPEELGALFSLAETALRTWEPQVSGFLEAAVREEAEDRLGALSELTLASE 62
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
GG+P AER L + + P ++ L I+GNF F P S D + G+G ++G
Sbjct: 63 GGHPGAERRCLLLARSGQEPTAPALLG-LEISGNFLFDPASAADMAEGLAGSGATAAELG 121
Query: 187 DIILQN 192
D+ L+
Sbjct: 122 DLWLRG 127
>gi|332686279|ref|YP_004456053.1| hypothetical protein MPTP_0778 [Melissococcus plutonius ATCC 35311]
gi|379727687|ref|YP_005319872.1| hypothetical protein MPD5_1157 [Melissococcus plutonius DAT561]
gi|332370288|dbj|BAK21244.1| hypothetical protein, contains S4-like RNA binding domain
[Melissococcus plutonius ATCC 35311]
gi|376318590|dbj|BAL62377.1| hypothetical protein MPD5_1157 [Melissococcus plutonius DAT561]
Length = 256
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 93 SRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCRLSVGHPEALTSD 148
S+ E+ +S +LT + LE L D+ GGY AER R + S+
Sbjct: 21 SKVELYYSPYLTNFLDPRQAYILETLVHQNNDLLYKFYGGYENAERQRCMIYPSYYQPSE 80
Query: 149 PDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
D ++ + IT F SHG LG+++ GI RE GDII
Sbjct: 81 EDFKISLVEITYPIKFATLSHGKILGTLVNMGIKREYFGDII 122
>gi|253577876|ref|ZP_04855148.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850194|gb|EES78152.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 250
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+K I E+A + R V SDFL + + GGY AER ++
Sbjct: 8 LKRIRELANLSWQRDIVTFSDFLNLNEQNIVSSLKHQFPQIVMETSGGYENAER-QMVAF 66
Query: 141 HPEALTSDPDI-VAALSITGN-FGF-QPCSHGDFLGSILGTGIAREKIGDIILQNKG--F 195
HP+AL + + L I F + SH D+LG++L G+ R IGDI++Q K F
Sbjct: 67 HPDALAFTWEYPIDCLRIEPKALKFSEELSHRDYLGALLNLGVDRSVIGDIVVQKKAAWF 126
Query: 196 LCSG 199
C
Sbjct: 127 FCQN 130
>gi|260584171|ref|ZP_05851919.1| YlmH protein [Granulicatella elegans ATCC 700633]
gi|260158797|gb|EEW93865.1| YlmH protein [Granulicatella elegans ATCC 700633]
Length = 262
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 120 DVKAVAQGGYPQAERCRLSVGHPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
D+K +GGY AER R + +P+ A T++ V + I F SHG LGS++G
Sbjct: 56 DIKFQFEGGYIAAERKRCMI-YPDFYAPTTEEFDVELIEIHYPIKFSSISHGQILGSLVG 114
Query: 178 TGIAREKIGDII 189
GI R+++GDII
Sbjct: 115 LGIDRDQLGDII 126
>gi|304437219|ref|ZP_07397179.1| ribosomal protein S4e [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304369711|gb|EFM23376.1| ribosomal protein S4e [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 264
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E +L++A R+ S FL P + + D++ GGY AER R
Sbjct: 20 ETAVRLLDLAETVVKTRKFRISPFLDPYGQEIAETIRASYDDLQLDFDGGYQGAERARAM 79
Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ H + D + + T N F +H D LG+++G GI RE IGDI+
Sbjct: 80 LRHRDFAGRTEDFGIVCVEATWNGQFARLTHRDVLGAVMGLGIEREMIGDIL 131
>gi|310659182|ref|YP_003936903.1| RNA binding protein [[Clostridium] sticklandii]
gi|308825960|emb|CBH21998.1| RNA binding protein [[Clostridium] sticklandii]
Length = 261
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 143 EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
E+L DI+ I+GNF F SH D+LG++L GI REK+GDI
Sbjct: 85 ESLEKPYDII---KISGNFKFNKLSHRDYLGALLALGIKREKLGDI 127
>gi|16078605|ref|NP_389424.1| hypothetical protein BSU15410 [Bacillus subtilis subsp. subtilis
str. 168]
gi|221309415|ref|ZP_03591262.1| hypothetical protein Bsubs1_08521 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313740|ref|ZP_03595545.1| hypothetical protein BsubsN3_08457 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318664|ref|ZP_03599958.1| hypothetical protein BsubsJ_08391 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322937|ref|ZP_03604231.1| hypothetical protein BsubsS_08497 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402775786|ref|YP_006629730.1| shape determination RNA-binding protein [Bacillus subtilis QB928]
gi|418033313|ref|ZP_12671790.1| hypothetical protein BSSC8_27340 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|452914017|ref|ZP_21962644.1| S4 domain protein [Bacillus subtilis MB73/2]
gi|81345679|sp|P71020.1|YLMH_BACSU RecName: Full=Putative RNA-binding protein YlmH
gi|1518679|gb|AAB49278.1| orf [Bacillus subtilis subsp. subtilis str. 168]
gi|2633914|emb|CAB13415.1| factor involved in shape determination, RNA-binding fold [Bacillus
subtilis subsp. subtilis str. 168]
gi|351469461|gb|EHA29637.1| hypothetical protein BSSC8_27340 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402480969|gb|AFQ57478.1| Factor involved in shape determination, RNA-binding fold protein
[Bacillus subtilis QB928]
gi|407958948|dbj|BAM52188.1| shape determination protein [Synechocystis sp. PCC 6803]
gi|407964525|dbj|BAM57764.1| shape determination protein [Bacillus subtilis BEST7003]
gi|452116437|gb|EME06832.1| S4 domain protein [Bacillus subtilis MB73/2]
Length = 257
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + +DFL P +E ++ A+ ADV GGY +AER R +
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-A 71
Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ PE +T SD ++ A ++ F H LG+++G G+ R+K GDI+
Sbjct: 72 ILFPEYITPEESDFEL-QAFNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF 125
>gi|402833534|ref|ZP_10882147.1| S4 domain protein [Selenomonas sp. CM52]
gi|402280027|gb|EJU28797.1| S4 domain protein [Selenomonas sp. CM52]
Length = 261
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
GGY AER R H + + +A + F SH D LG+I+G G+ RE IG
Sbjct: 66 GGYAGAERQRAVFQHEDFRGTPSWEIAVVEAQWKDAFAHISHRDVLGAIMGLGVEREIIG 125
Query: 187 DIILQNKG-----------FLCSGCLQY 203
DI +Q FL + C+Q+
Sbjct: 126 DIQIQQGAARIVTAENMADFLLTNCVQF 153
>gi|313123447|ref|YP_004033706.1| cell division protein, s4-like domain [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312280010|gb|ADQ60729.1| Cell division protein, S4-like domain [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 265
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGEEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYHVQLFE 95
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
I F H LGS+ +G+ + GDII +G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQG 133
>gi|374296346|ref|YP_005046537.1| hypothetical protein [Clostridium clariflavum DSM 19732]
gi|359825840|gb|AEV68613.1| hypothetical protein Clocl_2014 [Clostridium clariflavum DSM 19732]
Length = 263
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 64 NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
N +++LK V V +L+ A +V +DFL P ++ + A +D+
Sbjct: 2 NKEEILKKVSKSEDRLVVAKVLDKFYLAEKTGKVTVTDFLDPR-MQNVVSACLNSSDIDN 60
Query: 124 -VAQGGYPQAERCRLSVGHPEALTSD--PDIVAALSITGNFGFQPC-------SHGDFLG 173
+ GGY AER + V P + D PD++ + + C SH D+LG
Sbjct: 61 FLFYGGYEGAERA-VVVFCPRNMPIDYEPDLIGFFKV-----LKICLMSRGSVSHRDYLG 114
Query: 174 SILGTGIAREKIGDIILQNK 193
S++G GI REKIGDI+++++
Sbjct: 115 SLMGLGIKREKIGDILIKDE 134
>gi|303229252|ref|ZP_07316048.1| S4 domain protein [Veillonella atypica ACS-134-V-Col7a]
gi|302516107|gb|EFL58053.1| S4 domain protein [Veillonella atypica ACS-134-V-Col7a]
Length = 261
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
EE + +L++A + + DF +P L + ++ + GGY AER R++
Sbjct: 18 EEARRMLDLAEQVVKGKPYRVCDFTSPAGLVIADAIKAAYPELLVQSYGGYEGAERIRIA 77
Query: 139 V--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
H + T D IV L ++ + F+ +H D LGS++G GI R K GDII+ G
Sbjct: 78 FVDSHFQG-TVDMGIVP-LKVSWDPRFRLLNHRDVLGSLMGLGIDRSKFGDIIMGQGG 133
>gi|169824335|ref|YP_001691946.1| putative RNA binding protein [Finegoldia magna ATCC 29328]
gi|167831140|dbj|BAG08056.1| putative RNA binding protein [Finegoldia magna ATCC 29328]
Length = 258
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 95 REVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG----HPEALTSDPD 150
+ + +DF+ P ++ ++ L DV +A E + + + E + D
Sbjct: 31 KTIYSTDFMNPKEIEYAISILNTETDVGYMATNCPKNCENSIIIMWDRYCYSEEYINMFD 90
Query: 151 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGF-LCS 198
+ L I + Q SH D LG++L GI REKIGDI NK F +C+
Sbjct: 91 YIGLLEIQTD---QEISHRDILGAVLNLGINREKIGDIFTHNKRFYICA 136
>gi|254430233|ref|ZP_05043936.1| photosystem II S4 domain protein [Cyanobium sp. PCC 7001]
gi|197624686|gb|EDY37245.1| photosystem II S4 domain protein [Cyanobium sp. PCC 7001]
Length = 261
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 6/129 (4%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLL G + + EV +E A RA + + FL VL+E+M L +LA+++ A
Sbjct: 6 DLLAGSRHPDQLVEV---IEAAERALHTWQPQWTGFLEGAVLEEAMARLGQLAELELRAA 62
Query: 127 GGYPQAERCRLSVGHPEA-LTSDP--DIVAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GG+ AERCRL + EA L +P + L ++GNF F P +F +++ G A
Sbjct: 63 GGHAGAERCRLLLTRREAGLDPEPLDTGLLGLLLSGNFLFDPAEPDEFRSALIQQGWADG 122
Query: 184 KIGDIILQN 192
IGD+ L+
Sbjct: 123 AIGDVWLRG 131
>gi|89895631|ref|YP_519118.1| hypothetical protein DSY2885 [Desulfitobacterium hafniense Y51]
gi|89335079|dbj|BAE84674.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 268
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 69 LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAVAQ 126
LK +K E H+L++ A + + + + FL + E ++ E LA +
Sbjct: 13 LKFWTEKEMRLEGAHLLDLCNEALGQGQPVWTPFLGQALANWLEGILQREGLA---FRLE 69
Query: 127 GGYPQAERCR-LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GG+P AER R L V P+ L + P + AL T H LGS++G G+ RE I
Sbjct: 70 GGFPDAERVRFLVVADPDVLDNVPSEIRALQATTVDPRGKLDHRQVLGSLMGLGLKREVI 129
Query: 186 GDIILQNK 193
GDI L +
Sbjct: 130 GDIRLTEQ 137
>gi|402555979|ref|YP_006597250.1| S4 domain-containing protein [Bacillus cereus FRI-35]
gi|401797189|gb|AFQ11048.1| S4 domain protein [Bacillus cereus FRI-35]
Length = 255
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G QAER R ++
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|222529338|ref|YP_002573220.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
bescii DSM 6725]
gi|222456185|gb|ACM60447.1| RNA-binding S4 domain protein [Caldicellulosiruptor bescii DSM
6725]
Length = 260
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 99 HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 157
+SDFL+P +K ++ L K + + + GGY +ER L++ + + ++ + I
Sbjct: 33 YSDFLSPFAIKYAVEVLLKNQNHILHRSWGGYEGSERNILALFNRDFEEYTENLTYPIQI 92
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFLC 197
SH LGS +G G+ R+KIGDI+++ G L
Sbjct: 93 ILIEAKNNLSHRQILGSFIGNGLKRDKIGDILVKENGALV 132
>gi|33861912|ref|NP_893473.1| hypothetical protein PMM1356 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33640280|emb|CAE19815.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 263
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DL + + + N +E++ ++ ++ + + + F + V +E + E L D K
Sbjct: 3 DLKELLINSNYKKEIEELINISNLSLKHWQTYWTGFNSTFVCEEILKEFENLNDFKFFVF 62
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVA-----ALSITGNFGFQPCSHGDFLGSILGTGIA 181
GGY A+R +++ + +++ + GNF F + DF ++ G+
Sbjct: 63 GGYNSAQRSKIACFREDNTPEKNELIKDFPAKGFQMNGNFLFDNATQDDFRSLLVDNGLR 122
Query: 182 REKIGDI 188
E+IGDI
Sbjct: 123 EERIGDI 129
>gi|332653672|ref|ZP_08419416.1| S4 domain protein [Ruminococcaceae bacterium D16]
gi|332516758|gb|EGJ46363.1| S4 domain protein [Ruminococcaceae bacterium D16]
Length = 265
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 99 HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRL--SVGHPEALTSDPD-IVA 153
H+ FL+P L + V GGYP AER C E +DP+ +A
Sbjct: 38 HTPFLSPGERASVTDLLSAWGHPRHVFFGGYPDAERTVCLFLPDWQEEEDAIADPEGPLA 97
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
AL T G + SH D LGS++G GI REK+GDI+++
Sbjct: 98 ALEATFPNGAE-LSHRDILGSLMGLGITREKLGDILVE 134
>gi|123966750|ref|YP_001011831.1| S4-like domain-containing protein [Prochlorococcus marinus str. MIT
9515]
gi|123201116|gb|ABM72724.1| Uncharacterized conserved protein, contains S4-like domain
[Prochlorococcus marinus str. MIT 9515]
Length = 263
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 67 DLLKGVGDKNAIEEVKHILEMA-RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
+LL K IEE+ +I ++ + + +S F+ +LKE E L D K
Sbjct: 6 ELLINSNYKKEIEELINISNLSLKHWVTYWTGFNSTFVCEEILKE----FENLNDFKFFV 61
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIV-----AALSITGNFGFQPCSHGDFLGSILGTGI 180
GGYP A++ +++ + + + +++ + + GNF F + DF + G+
Sbjct: 62 FGGYPSAQKSKIACFREDNVPDENELIKNFPAKGILMKGNFLFDNATQDDFRSLLRDNGL 121
Query: 181 AREKIGDI 188
E+IGDI
Sbjct: 122 IEERIGDI 129
>gi|302380712|ref|ZP_07269177.1| S4 domain protein [Finegoldia magna ACS-171-V-Col3]
gi|303233951|ref|ZP_07320600.1| S4 domain protein [Finegoldia magna BVS033A4]
gi|417926557|ref|ZP_12569954.1| hypothetical protein HMPREF9489_0484 [Finegoldia magna
SY403409CC001050417]
gi|302311655|gb|EFK93671.1| S4 domain protein [Finegoldia magna ACS-171-V-Col3]
gi|302494876|gb|EFL54633.1| S4 domain protein [Finegoldia magna BVS033A4]
gi|341588925|gb|EGS32295.1| hypothetical protein HMPREF9489_0484 [Finegoldia magna
SY403409CC001050417]
Length = 258
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 95 REVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG----HPEALTSDPD 150
+ + +DF+ P ++ ++ L DV +A E + + + E + D
Sbjct: 31 KTIYSTDFMNPKEIEYAISILNTETDVGYMATNCPKNCENSIIIMWDRYCYSEEYINMFD 90
Query: 151 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGF-LCS 198
+ L I + Q SH D LG++L GI REKIGDI NK F +C+
Sbjct: 91 YIGLLEIQTD---QEISHRDILGAVLNLGINREKIGDIFTHNKRFYICA 136
>gi|418035959|ref|ZP_12674397.1| hypothetical protein LDBUL1519_01097 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|354689118|gb|EHE89130.1| hypothetical protein LDBUL1519_01097 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 265
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
I F H LGS+ +G+ + GDII +G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQG 133
>gi|42782990|ref|NP_980237.1| S4 domain-containing protein [Bacillus cereus ATCC 10987]
gi|42738917|gb|AAS42845.1| S4 domain protein [Bacillus cereus ATCC 10987]
Length = 255
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G QAER R ++
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|300811330|ref|ZP_07091827.1| S4 domain protein [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300497694|gb|EFK32719.1| S4 domain protein [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 265
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
I F H LGS+ +G+ + GDII +G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQG 133
>gi|295100786|emb|CBK98331.1| Uncharacterized conserved protein, contains S4-like domain
[Faecalibacterium prausnitzii L2-6]
Length = 273
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA--DVKAVAQGGYPQAERCRLS 138
++H+ ++AR A R +S FL+ + + AL + + +GG+P AER L
Sbjct: 27 MRHVEDLARAAFGRGIARYSAFLSDREQQLAQAALNRAGAPEESCRFEGGWPDAERRVLC 86
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ + + P L G Q H D+LGS++G + RE +GDI+L
Sbjct: 87 LEPEDCCPASPVCCVRLRCRALAGAQLPVHKDYLGSLMGLELRREALGDIVL 138
>gi|116513838|ref|YP_812744.1| cell division protein [Lactobacillus delbrueckii subsp. bulgaricus
ATCC BAA-365]
gi|418029212|ref|ZP_12667760.1| hypothetical protein LDBUL1632_00554 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|116093153|gb|ABJ58306.1| Cell division protein, S4-like domain [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|354690930|gb|EHE90872.1| hypothetical protein LDBUL1632_00554 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 265
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
I F H LGS+ +G+ + GDII +G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQG 133
>gi|342218196|ref|ZP_08710820.1| S4 domain protein [Megasphaera sp. UPII 135-E]
gi|341590796|gb|EGS34026.1| S4 domain protein [Megasphaera sp. UPII 135-E]
Length = 261
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 10/98 (10%)
Query: 100 SDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSV---GHPEALTSDPDIVAA 154
S+F++P ++ E++ A EK+ ++ GGY AER RL+ + A+ D + A
Sbjct: 39 SEFVSPGAIQIGETICAHEKMLQLRVF--GGYEGAERVRLAFVDRTYEGAVQYD---IQA 93
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
I + ++ SH D LGS++ GI R + GDI++Q
Sbjct: 94 CHIGWDSRYRLLSHRDVLGSLMSMGIERSRFGDILMQE 131
>gi|384181712|ref|YP_005567474.1| S4 domain-containing protein [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324327796|gb|ADY23056.1| S4 domain protein [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 255
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G QAER R ++
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLVINEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|104773831|ref|YP_618811.1| RNA binding protein [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|103422912|emb|CAI97574.1| Putative RNA binding protein [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 265
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
I F H LGS+ +G+ + GDII +G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQG 133
>gi|385815458|ref|YP_005851849.1| Cell-division protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|325125495|gb|ADY84825.1| Cell-division protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
Length = 265
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGGEAIVQAFGGYEEAEKCRLYISLEWENLRPDDYQVQLFE 95
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
I F H LGS+ +G+ + GDII +G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQG 133
>gi|423615839|ref|ZP_17591673.1| hypothetical protein IIO_01165 [Bacillus cereus VD115]
gi|401260376|gb|EJR66549.1| hypothetical protein IIO_01165 [Bacillus cereus VD115]
Length = 255
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G P AER R ++
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFDGATPYAERRR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHWQILGTFMSLGLTREKCGDILLQE 125
>gi|423604475|ref|ZP_17580368.1| hypothetical protein IIK_01056 [Bacillus cereus VD102]
gi|401245095|gb|EJR51453.1| hypothetical protein IIK_01056 [Bacillus cereus VD102]
Length = 255
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G QAER R ++
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLVINEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|229174564|ref|ZP_04302094.1| RNA-binding S4 domain protein [Bacillus cereus MM3]
gi|228608869|gb|EEK66161.1| RNA-binding S4 domain protein [Bacillus cereus MM3]
Length = 241
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+RA+ +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATPHAERKR-ALIYPDYLVVN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 111
>gi|206976717|ref|ZP_03237621.1| S4 domain protein [Bacillus cereus H3081.97]
gi|217961318|ref|YP_002339886.1| S4 domain-containing protein [Bacillus cereus AH187]
gi|222097343|ref|YP_002531400.1| s4 domain protein [Bacillus cereus Q1]
gi|375285823|ref|YP_005106262.1| S4 domain-containing protein [Bacillus cereus NC7401]
gi|423353601|ref|ZP_17331228.1| hypothetical protein IAU_01677 [Bacillus cereus IS075]
gi|423374305|ref|ZP_17351643.1| hypothetical protein IC5_03359 [Bacillus cereus AND1407]
gi|423567206|ref|ZP_17543453.1| hypothetical protein II7_00429 [Bacillus cereus MSX-A12]
gi|423574496|ref|ZP_17550615.1| hypothetical protein II9_01717 [Bacillus cereus MSX-D12]
gi|206745027|gb|EDZ56430.1| S4 domain protein [Bacillus cereus H3081.97]
gi|217063822|gb|ACJ78072.1| S4 domain protein [Bacillus cereus AH187]
gi|221241401|gb|ACM14111.1| S4 domain protein [Bacillus cereus Q1]
gi|358354350|dbj|BAL19522.1| S4 domain protein [Bacillus cereus NC7401]
gi|401089414|gb|EJP97585.1| hypothetical protein IAU_01677 [Bacillus cereus IS075]
gi|401094217|gb|EJQ02299.1| hypothetical protein IC5_03359 [Bacillus cereus AND1407]
gi|401212021|gb|EJR18767.1| hypothetical protein II9_01717 [Bacillus cereus MSX-D12]
gi|401214294|gb|EJR21024.1| hypothetical protein II7_00429 [Bacillus cereus MSX-A12]
Length = 255
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G QAER R ++
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLVINEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|302388662|ref|YP_003824483.1| RNA-binding S4 domain-containing protein [Thermosediminibacter
oceani DSM 16646]
gi|302199290|gb|ADL06860.1| RNA-binding S4 domain protein [Thermosediminibacter oceani DSM
16646]
Length = 253
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
+GG+ +AER ++ V PE L P + A+ + + SH D+LG++LG GI+R+
Sbjct: 55 EGGHSEAER-KVLVAFPEYLEDQPFFLPIRAIRVIPKDPDEHPSHRDYLGAVLGLGISRD 113
Query: 184 KIGDIILQNKG 194
K+GDII+ G
Sbjct: 114 KVGDIIVTKTG 124
>gi|422845429|ref|ZP_16892139.1| S4 domain protein [Lactobacillus delbrueckii subsp. lactis DSM
20072]
gi|325684357|gb|EGD26526.1| S4 domain protein [Lactobacillus delbrueckii subsp. lactis DSM
20072]
Length = 265
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
+DFL P +E +A +A+ Q GGY +AE+CRL + E L D V
Sbjct: 40 TDFLDP----RQRQIMETIAGEEAIMQAFGGYEEAEKCRLYISLEWENLRPDDYHVQLFE 95
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
I F H LGS+ +G+ + GDII +G
Sbjct: 96 IEYPQKFASLRHSQILGSLANSGVKTDTFGDIITDGQG 133
>gi|187934764|ref|YP_001886623.1| S4 domain-containing protein [Clostridium botulinum B str. Eklund
17B]
gi|187722917|gb|ACD24138.1| S4 domain protein [Clostridium botulinum B str. Eklund 17B]
Length = 254
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K+IL + + S V + F +P + K E + K +G + ER +S +
Sbjct: 23 KYILAVDKDIS----VFGNYFYSPKIWKWFKENCE-TSKFKVTCEGIFKNCERKMISFNN 77
Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ P + L + G F H DFLG IL GI R KIGD+I+++
Sbjct: 78 ---IYDSPFPIKLLKVEGKSKFSNLEHKDFLGGILSLGIERNKIGDLIVED 125
>gi|335040583|ref|ZP_08533709.1| RNA-binding S4 domain protein [Caldalkalibacillus thermarum TA2.A1]
gi|334179553|gb|EGL82192.1| RNA-binding S4 domain protein [Caldalkalibacillus thermarum TA2.A1]
Length = 257
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAALSITGNFGFQPCSHGDFLGSILG 177
DVK GG+ QAER R + P+ L T D +A L+I + + +H D LGS+LG
Sbjct: 55 DVKVKLWGGFQQAERKRAWII-PDYLDVTWDEFQLALLNIKAS-QWVNVTHRDVLGSLLG 112
Query: 178 TGIAREKIGDIIL 190
G+ RE +GDI++
Sbjct: 113 MGLKREVVGDILI 125
>gi|160880492|ref|YP_001559460.1| RNA-binding S4 domain-containing protein [Clostridium
phytofermentans ISDg]
gi|160429158|gb|ABX42721.1| RNA-binding S4 domain protein [Clostridium phytofermentans ISDg]
Length = 263
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ILE A+ A + +++DFL + ++L + GGY AER R+ H
Sbjct: 12 KIILESAKSAYHKEICVYTDFLNINEISIFHSMEKELPLLAYSMYGGYEGAERVRICF-H 70
Query: 142 PEALTSDPDIVAALSITGNFGFQ-----PCS--------HGDFLGSILGTGIAREKIGDI 188
+ + +I+ ++ Q P S H D+LG+IL GI R K+GDI
Sbjct: 71 GDMVKEHGNIMLQTEDKNDYPIQCLRIYPASEKFAGELDHRDYLGAILNVGIERSKLGDI 130
Query: 189 ILQNKGFLC 197
+++ K C
Sbjct: 131 LVRGKEAYC 139
>gi|366086111|ref|ZP_09452596.1| RNA-binding S4 domain-containing protein [Lactobacillus zeae KCTC
3804]
Length = 259
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
+ H E+ A + + +DF P ++ +S+++ D+K + GGYP AER RL
Sbjct: 16 IDHFAELVETARTEYRAVLTDFTDPRQRLIADSLISAHD--DMKLMHFGGYPHAERQRL- 72
Query: 139 VGHPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL--QNKG 194
+ P+ + PD + L I F H G++L G+ R+ GDII Q
Sbjct: 73 IFAPDYYEAQPDDFDIRLLQIVYPEKFAEMHHSTIQGTLLNAGLDRDVFGDIITDGQTWQ 132
Query: 195 FLCSGCLQ 202
F + ++
Sbjct: 133 FFVAAHME 140
>gi|350265853|ref|YP_004877160.1| S4 domain-containing protein [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349598740|gb|AEP86528.1| S4 domain protein [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 257
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 100 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAA 154
+DFL P +E ++ A+ ADV GGY +AER R ++ +PE +T SD ++ A
Sbjct: 35 TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-AILYPEYITPEESDFEL-QA 89
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
++ F H LG+++G G+ R+K GDI+
Sbjct: 90 FNVRYAEKFVSVDHRSLLGALMGIGLKRQKFGDIVF 125
>gi|303230546|ref|ZP_07317300.1| S4 domain protein [Veillonella atypica ACS-049-V-Sch6]
gi|401680660|ref|ZP_10812572.1| S4 domain protein [Veillonella sp. ACP1]
gi|429760793|ref|ZP_19293254.1| S4 domain protein [Veillonella atypica KON]
gi|302514787|gb|EFL56775.1| S4 domain protein [Veillonella atypica ACS-049-V-Sch6]
gi|400218325|gb|EJO49208.1| S4 domain protein [Veillonella sp. ACP1]
gi|429176701|gb|EKY18066.1| S4 domain protein [Veillonella atypica KON]
Length = 261
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
EE + +L++A + + DF +P L + ++ + GGY AER R++
Sbjct: 18 EEARRMLDLAEQVVKGKPYRVCDFTSPAGLVIADAIKAAYPELLVQSYGGYEGAERIRIA 77
Query: 139 V--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
H + T D I+ L ++ + F+ +H D LGS++G GI R K GDII+ G
Sbjct: 78 FVDSHFQG-TVDMGIIP-LKVSWDPRFRLLNHRDVLGSLMGLGIDRSKFGDIIMGQGG 133
>gi|291533844|emb|CBL06957.1| lipoprotein signal peptidase [Megamonas hypermegale ART12/1]
Length = 418
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E V +++ + R+ +DFL P + + + + GGY AER +
Sbjct: 18 EIVIKLIDAVEAVNKTRKFRATDFLDPYGCEIAETVVAHYDGISVDFFGGYIGAERQCAN 77
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
H + + ++ + T N F SH D LG+++G GI RE+IGD+++
Sbjct: 78 FVHEDFMGKPSYNISVVKATWNDKFYRLSHRDVLGALMGLGIKREQIGDLLI 129
>gi|284048331|ref|YP_003398670.1| RNA-binding S4 domain-containing protein [Acidaminococcus
fermentans DSM 20731]
gi|283952552|gb|ADB47355.1| RNA-binding S4 domain protein [Acidaminococcus fermentans DSM
20731]
Length = 265
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
+L++A+ A R S FL P + + V+ GG+ AER +++
Sbjct: 26 QLLDLAKGARKSRRARVSGFLDPHGQNVAEIVAANYPQVRYEMNGGFQNAERQKVAF-IA 84
Query: 143 EALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
E PD + AL I + + H D LG+ +G G RE +GDI+ ++G
Sbjct: 85 EDFYGQPDFAITALEILWDKRYYDIGHRDVLGAFMGLGCKREILGDIVFIDEG 137
>gi|218282318|ref|ZP_03488608.1| hypothetical protein EUBIFOR_01190 [Eubacterium biforme DSM 3989]
gi|218216691|gb|EEC90229.1| hypothetical protein EUBIFOR_01190 [Eubacterium biforme DSM 3989]
Length = 242
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
++ V GGY AER +++ PE D V L T N F+ +H D LG ++ +G
Sbjct: 45 NICVVFDGGYENAER-KIACFIPEGYEGFSDCVC-LHATYNSKFKTLTHSDLLGCLMHSG 102
Query: 180 IAREKIGDIILQ 191
I R IGD+I+Q
Sbjct: 103 IERSVIGDLIVQ 114
>gi|257439837|ref|ZP_05615592.1| putative S4 domain protein [Faecalibacterium prausnitzii A2-165]
gi|257197746|gb|EEU96030.1| S4 domain protein [Faecalibacterium prausnitzii A2-165]
Length = 273
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA---QGGYPQAERCRL 137
++H+ ++AR A R +S FL+ + AL + ADV +GG+P AER L
Sbjct: 27 MRHVEDLARAAEGRGIARYSGFLSDREQDLARAALNR-ADVPESDHHFEGGWPGAERKLL 85
Query: 138 SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ + P L+ G SH D+LGS++G + RE +GDI+L
Sbjct: 86 CLEPEGCYPASPLCCVKLTCRTLSGAALPSHKDYLGSLMGLELRREALGDIVL 138
>gi|398310642|ref|ZP_10514116.1| shape determination protein [Bacillus mojavensis RO-H-1]
Length = 257
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + +DFL P +E ++ A+ ADV GGY +AER R +
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVILAAVTGQADVGLAFCGGYGRAERKR-A 71
Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ +PE +T SD ++ A + F H LGS++G G+ R+K GD++
Sbjct: 72 ILYPEYITPEESDFEL-QAFDVRYAEKFVTVDHRSLLGSLMGIGLKRQKFGDLVF 125
>gi|336434971|ref|ZP_08614689.1| hypothetical protein HMPREF0988_00274 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336001864|gb|EGN31991.1| hypothetical protein HMPREF0988_00274 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 259
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 28/135 (20%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVL-------KESMMALEKLADVKAVAQGGYPQAER 134
K +LE++R A R + +SDFL P L K+S+ + ++ GGY AER
Sbjct: 10 KRLLELSRLAYHRDIITYSDFLNPNELHILHSLPKDSLYSQYRVF-------GGYELAER 62
Query: 135 CRLSVGHPEALTSD---------PDIVAALSIT---GNFGFQPCSHGDFLGSILGTGIAR 182
++ P+AL+ PD + L I + + +H D+LG++L GI R
Sbjct: 63 -QMVAFLPDALSLRTENLQELFFPDEMCVLRIEPLHKKYA-EELTHRDYLGAMLNLGIDR 120
Query: 183 EKIGDIILQNKGFLC 197
K GDI++ G L
Sbjct: 121 SKTGDILVNESGALV 135
>gi|331001804|ref|ZP_08325326.1| hypothetical protein HMPREF0491_00188 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412778|gb|EGG92161.1| hypothetical protein HMPREF0491_00188 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 249
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
IL++AR+A + V +S FL +L ++K + GGY +AER + E
Sbjct: 12 ILDLARKAYFKNVVTYSAFLNLYEQTIFEQIQNELPNIKNIMFGGYSEAERKIVCFYFDE 71
Query: 144 ALTSDPDIVAALSITGNFGFQPC--------SHGDFLGSILGTGIAREKIGDIILQN 192
D D++ + I PC +H DFLG+++ GI R IGDI + +
Sbjct: 72 --IPDFDMLEYIKIF------PCNKKFADNLTHRDFLGALMNLGIERHMIGDICIDD 120
>gi|229075655|ref|ZP_04208637.1| RNA-binding S4 domain protein [Bacillus cereus Rock4-18]
gi|229098368|ref|ZP_04229313.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-29]
gi|229104461|ref|ZP_04235128.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-28]
gi|229117394|ref|ZP_04246770.1| RNA-binding S4 domain protein [Bacillus cereus Rock1-3]
gi|407706356|ref|YP_006829941.1| cytochrome c oxidase subunit II [Bacillus thuringiensis MC28]
gi|423378250|ref|ZP_17355534.1| hypothetical protein IC9_01603 [Bacillus cereus BAG1O-2]
gi|423441371|ref|ZP_17418277.1| hypothetical protein IEA_01701 [Bacillus cereus BAG4X2-1]
gi|423448403|ref|ZP_17425282.1| hypothetical protein IEC_03011 [Bacillus cereus BAG5O-1]
gi|423464445|ref|ZP_17441213.1| hypothetical protein IEK_01632 [Bacillus cereus BAG6O-1]
gi|423533787|ref|ZP_17510205.1| hypothetical protein IGI_01619 [Bacillus cereus HuB2-9]
gi|423540957|ref|ZP_17517348.1| hypothetical protein IGK_03049 [Bacillus cereus HuB4-10]
gi|423547195|ref|ZP_17523553.1| hypothetical protein IGO_03630 [Bacillus cereus HuB5-5]
gi|423623023|ref|ZP_17598801.1| hypothetical protein IK3_01621 [Bacillus cereus VD148]
gi|228666004|gb|EEL21470.1| RNA-binding S4 domain protein [Bacillus cereus Rock1-3]
gi|228678903|gb|EEL33113.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-28]
gi|228684985|gb|EEL38918.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-29]
gi|228707431|gb|EEL59622.1| RNA-binding S4 domain protein [Bacillus cereus Rock4-18]
gi|401128997|gb|EJQ36680.1| hypothetical protein IEC_03011 [Bacillus cereus BAG5O-1]
gi|401172145|gb|EJQ79366.1| hypothetical protein IGK_03049 [Bacillus cereus HuB4-10]
gi|401178916|gb|EJQ86089.1| hypothetical protein IGO_03630 [Bacillus cereus HuB5-5]
gi|401259796|gb|EJR65970.1| hypothetical protein IK3_01621 [Bacillus cereus VD148]
gi|401636516|gb|EJS54270.1| hypothetical protein IC9_01603 [Bacillus cereus BAG1O-2]
gi|402418032|gb|EJV50332.1| hypothetical protein IEA_01701 [Bacillus cereus BAG4X2-1]
gi|402420712|gb|EJV52983.1| hypothetical protein IEK_01632 [Bacillus cereus BAG6O-1]
gi|402464006|gb|EJV95706.1| hypothetical protein IGI_01619 [Bacillus cereus HuB2-9]
gi|407384041|gb|AFU14542.1| RNA-binding S4 domain protein [Bacillus thuringiensis MC28]
Length = 255
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G P AER R ++
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFDGATPYAERRR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|373455824|ref|ZP_09547647.1| hypothetical protein HMPREF9453_01816 [Dialister succinatiphilus
YIT 11850]
gi|371934496|gb|EHO62282.1| hypothetical protein HMPREF9453_01816 [Dialister succinatiphilus
YIT 11850]
Length = 263
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 121 VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
VK+ A GGY +AER R++ + + LS+T + ++ H D LGS++G GI
Sbjct: 62 VKSTAFGGYHEAERVRIAFQRVDYDGPVDFSESLLSVTWDGRYRLIGHRDVLGSLMGLGI 121
Query: 181 AREKIGDIILQNKG 194
R GDI++Q G
Sbjct: 122 DRSVTGDILMQGAG 135
>gi|257125826|ref|YP_003163940.1| RNA-binding S4 domain-containing protein [Leptotrichia buccalis
C-1013-b]
gi|257049765|gb|ACV38949.1| RNA-binding S4 domain protein [Leptotrichia buccalis C-1013-b]
Length = 298
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFLCSGCL 201
L I+ + F+ SH DFLGS++G I RE +GD+IL+N+G SG +
Sbjct: 126 LKISIDSRFREYSHKDFLGSLMGLNIKRELMGDLILENEGRKISGYI 172
>gi|219670055|ref|YP_002460490.1| RNA-binding S4 domain-containing protein [Desulfitobacterium
hafniense DCB-2]
gi|219540315|gb|ACL22054.1| RNA-binding S4 domain protein [Desulfitobacterium hafniense DCB-2]
Length = 265
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 69 LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAVAQ 126
LK +K E H+L++ A + + + + FL + E ++ E LA +
Sbjct: 10 LKFWTEKEMRLEGAHLLDLCNEALGQGQPVWTPFLGQALANWLEGILQREGLA---FRLE 66
Query: 127 GGYPQAERCR-LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GG+P AER R L V P+ L + P + AL T H LGS++G G+ RE I
Sbjct: 67 GGFPDAERVRFLMVEDPDVLDNVPSEIRALQATPADPRGKLDHRQVLGSLMGLGLKREVI 126
Query: 186 GDIILQNK 193
GDI L +
Sbjct: 127 GDIRLTEQ 134
>gi|260438388|ref|ZP_05792204.1| S4 domain protein [Butyrivibrio crossotus DSM 2876]
gi|292808974|gb|EFF68179.1| S4 domain protein [Butyrivibrio crossotus DSM 2876]
Length = 250
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHP 142
+E A R +DFL + K+++ + +L V+ GGY AER +
Sbjct: 13 MEAADNCYYRNVPTSTDFL--DIYKQNLFNTVIRELPPVQYRFDGGYELAERKVIMFLPQ 70
Query: 143 EALTSDPDIVAALSITGNFGF-QPCSHGDFLGSILGTGIAREKIGDIILQNKGFLCSGCL 201
++ SD + N F + +H D+LGSI+G GI R+K+GDI+L + F C+
Sbjct: 71 DSEISDLPFLTLKVTPRNLHFTEKLNHRDYLGSIMGLGIKRDKVGDILLYD-NFAYIFCM 129
Query: 202 Q 202
+
Sbjct: 130 K 130
>gi|210612739|ref|ZP_03289454.1| hypothetical protein CLONEX_01656 [Clostridium nexile DSM 1787]
gi|210151432|gb|EEA82440.1| hypothetical protein CLONEX_01656 [Clostridium nexile DSM 1787]
Length = 264
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAV 124
D+ + K + K ++E++R + R V +SDFL L +M E K
Sbjct: 8 DIRTSIMQKEELMLQKRLIELSRLSYQRGIVTYSDFLNLNELNILHTMPKTELYTTYKVF 67
Query: 125 AQGGYPQAERCRLSVGHPEALTSDP----DIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
GGY +ER ++ P+A + ++ + F + SH D+LG++L GI
Sbjct: 68 --GGYDFSER-QMVAFLPDAFCYEYFYPISVLKIRPLQKKFS-EALSHRDYLGAVLNLGI 123
Query: 181 AREKIGDIILQN 192
R KIGDI++Q
Sbjct: 124 ERSKIGDILVQE 135
>gi|228987042|ref|ZP_04147167.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228772636|gb|EEM21077.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 241
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+RA+ +V +DFL P + M + + DV G QAER R ++ +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKR-ALIYPDYLVVN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 111
>gi|423582107|ref|ZP_17558218.1| hypothetical protein IIA_03622 [Bacillus cereus VD014]
gi|423635330|ref|ZP_17610983.1| hypothetical protein IK7_01739 [Bacillus cereus VD156]
gi|401212986|gb|EJR19727.1| hypothetical protein IIA_03622 [Bacillus cereus VD014]
gi|401278081|gb|EJR84017.1| hypothetical protein IK7_01739 [Bacillus cereus VD156]
Length = 255
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|365159325|ref|ZP_09355506.1| hypothetical protein HMPREF1014_00969 [Bacillus sp. 7_6_55CFAA_CT2]
gi|423412299|ref|ZP_17389419.1| hypothetical protein IE1_01603 [Bacillus cereus BAG3O-2]
gi|423426032|ref|ZP_17403063.1| hypothetical protein IE5_03721 [Bacillus cereus BAG3X2-2]
gi|423431916|ref|ZP_17408920.1| hypothetical protein IE7_03732 [Bacillus cereus BAG4O-1]
gi|423503426|ref|ZP_17480018.1| hypothetical protein IG1_00992 [Bacillus cereus HD73]
gi|363625323|gb|EHL76364.1| hypothetical protein HMPREF1014_00969 [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104367|gb|EJQ12344.1| hypothetical protein IE1_01603 [Bacillus cereus BAG3O-2]
gi|401110779|gb|EJQ18678.1| hypothetical protein IE5_03721 [Bacillus cereus BAG3X2-2]
gi|401116672|gb|EJQ24510.1| hypothetical protein IE7_03732 [Bacillus cereus BAG4O-1]
gi|402459647|gb|EJV91384.1| hypothetical protein IG1_00992 [Bacillus cereus HD73]
Length = 255
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|88807417|ref|ZP_01122929.1| RNA-binding S4 [Synechococcus sp. WH 7805]
gi|88788631|gb|EAR19786.1| RNA-binding S4 [Synechococcus sp. WH 7805]
Length = 259
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 87 MARRASSRREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
MAR EVL S FL+ P L E LE L++++ V GG AERCRL +
Sbjct: 18 MARLLDQAEEVLRTWQPSWSPFLSGPEL-EDAGKLEALSELRMVRDGGREGAERCRLQLS 76
Query: 141 HPEALT-SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
+ T S+ + L + GNF F D +++ ++ + IGD+ L+
Sbjct: 77 RRDQETNSESAPLCGLRLEGNFLFDRAEPDDMRQALMRLDVSADAIGDLWLR 128
>gi|410724123|ref|ZP_11363322.1| hypothetical protein A370_01382 [Clostridium sp. Maddingley
MBC34-26]
gi|410602409|gb|EKQ56889.1| hypothetical protein A370_01382 [Clostridium sp. Maddingley
MBC34-26]
Length = 258
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
D+K + G + AER +S + ++P + + I F SH DFLG IL G
Sbjct: 60 DLKIESNGLFEDAERRMISFNNS---YNNPFPMKLIKIENTSKFSKLSHRDFLGGILSLG 116
Query: 180 IAREKIGDIILQN 192
I R KIGD+++ N
Sbjct: 117 IERNKIGDLLVDN 129
>gi|398304131|ref|ZP_10507717.1| shape determination protein [Bacillus vallismortis DV1-F-3]
Length = 257
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + +DFL P +E ++ A+ ADV GGY +AER R +
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFFGGYDRAERKR-A 71
Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ +PE +T SD ++ A + F H LG+++G G+ R+K GDI+
Sbjct: 72 ILYPEYITPEESDFEL-QAFHVRYAEKFVSVDHRALLGALMGIGLKRQKFGDIVF 125
>gi|30021986|ref|NP_833617.1| RNA binding protein [Bacillus cereus ATCC 14579]
gi|296504392|ref|YP_003666092.1| RNA binding protein [Bacillus thuringiensis BMB171]
gi|423585693|ref|ZP_17561780.1| hypothetical protein IIE_01105 [Bacillus cereus VD045]
gi|423628992|ref|ZP_17604741.1| hypothetical protein IK5_01844 [Bacillus cereus VD154]
gi|423641024|ref|ZP_17616642.1| hypothetical protein IK9_00969 [Bacillus cereus VD166]
gi|423656758|ref|ZP_17632057.1| hypothetical protein IKG_03746 [Bacillus cereus VD200]
gi|29897542|gb|AAP10818.1| RNA binding protein [Bacillus cereus ATCC 14579]
gi|296325444|gb|ADH08372.1| RNA binding protein [Bacillus thuringiensis BMB171]
gi|401233039|gb|EJR39535.1| hypothetical protein IIE_01105 [Bacillus cereus VD045]
gi|401268537|gb|EJR74585.1| hypothetical protein IK5_01844 [Bacillus cereus VD154]
gi|401280085|gb|EJR86007.1| hypothetical protein IK9_00969 [Bacillus cereus VD166]
gi|401290499|gb|EJR96193.1| hypothetical protein IKG_03746 [Bacillus cereus VD200]
Length = 255
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|386758263|ref|YP_006231479.1| shape determination protein [Bacillus sp. JS]
gi|384931545|gb|AFI28223.1| shape determination protein [Bacillus sp. JS]
Length = 257
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + +DFL P +E ++ A+ DV GGY +AER R +
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVILTAVTGQTDVGLAFSGGYDRAERKR-A 71
Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ +PE +T SD ++ A + F H LG+++G G+ R+K GDI+
Sbjct: 72 ILYPEYITPEESDFEL-QAFHVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF 125
>gi|312622416|ref|YP_004024029.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202883|gb|ADQ46210.1| RNA-binding S4 domain protein [Caldicellulosiruptor kronotskyensis
2002]
Length = 255
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 99 HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 157
+SDFL+P +K ++ L K + + + GGY +ER L++ + + ++ +
Sbjct: 28 YSDFLSPFAIKYAVEVLLKNQNHILHRSWGGYEDSERNILALFNRDFEEYTENLTYPIQT 87
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFLC 197
SH LGS +G G+ R+KIGDI+++ G L
Sbjct: 88 ILIEAKNNLSHRQILGSFIGNGLKRDKIGDILVKENGALV 127
>gi|241895685|ref|ZP_04782981.1| ribosomal protein S4e [Weissella paramesenteroides ATCC 33313]
gi|241871052|gb|EER74803.1| ribosomal protein S4e [Weissella paramesenteroides ATCC 33313]
Length = 261
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAALSI 157
++FL P + + + D+K GGY AE RL + + E + D D++ + I
Sbjct: 36 TNFLNPREIYILKTLVNQQDDLKVFQYGGYQNAENQRLLIAPNYYEPIQDDFDLMV-IQI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F H LG+ + GIAR+ IGDII
Sbjct: 95 KYPEKFATLHHSTILGTFMHNGIARQSIGDII 126
>gi|125973307|ref|YP_001037217.1| RNA-binding S4 protein [Clostridium thermocellum ATCC 27405]
gi|256003788|ref|ZP_05428776.1| RNA-binding S4 domain protein [Clostridium thermocellum DSM 2360]
gi|281417510|ref|ZP_06248530.1| RNA-binding S4 domain protein [Clostridium thermocellum JW20]
gi|385778780|ref|YP_005687945.1| RNA-binding S4 domain-containing protein [Clostridium thermocellum
DSM 1313]
gi|419723203|ref|ZP_14250338.1| RNA-binding S4 domain protein [Clostridium thermocellum AD2]
gi|419724893|ref|ZP_14251948.1| RNA-binding S4 domain protein [Clostridium thermocellum YS]
gi|125713532|gb|ABN52024.1| RNA-binding S4 domain protein [Clostridium thermocellum ATCC 27405]
gi|255992349|gb|EEU02443.1| RNA-binding S4 domain protein [Clostridium thermocellum DSM 2360]
gi|281408912|gb|EFB39170.1| RNA-binding S4 domain protein [Clostridium thermocellum JW20]
gi|316940460|gb|ADU74494.1| RNA-binding S4 domain protein [Clostridium thermocellum DSM 1313]
gi|380771513|gb|EIC05378.1| RNA-binding S4 domain protein [Clostridium thermocellum YS]
gi|380780970|gb|EIC10633.1| RNA-binding S4 domain protein [Clostridium thermocellum AD2]
Length = 263
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 64 NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
N + +L+G+ V IL+ + HSDFL P LE
Sbjct: 2 NKEVILRGISKAEDKLLVARILDKYTLSQKIMSYTHSDFLDPYQQNVVRKCLEMSGIRDH 61
Query: 124 VAQGGYPQAERCRLS---VGHPEALTSD-PDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
V GG+ AER + PE + S+ L I N + SH D+LGS++G G
Sbjct: 62 VFYGGFSGAERTVVVFCPYYMPENIESEFSGFFEILKIKPN-TRENFSHRDYLGSLMGLG 120
Query: 180 IAREKIGDIILQ 191
I REKIGDI+++
Sbjct: 121 IKREKIGDILVR 132
>gi|336424183|ref|ZP_08604226.1| hypothetical protein HMPREF0994_00232 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336007851|gb|EGN37871.1| hypothetical protein HMPREF0994_00232 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 256
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 13/128 (10%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
DK+ ++ K LE+A ++ ++ + FL+ + A++K GG E
Sbjct: 6 DKDLLQLKKRFLELAEKSYAQNIYTFTGFLSMAEQEALFEAMQKNKSYTFSLSGGGEGCE 65
Query: 134 RCRLSVGHPEAL-TSDPDIVAALSIT-------GNFGFQPCSHGDFLGSILGTGIAREKI 185
R G PE L +P V L I+ NF +H DFLG+++ GI R +
Sbjct: 66 RQMARFGSPEELGYEEPFPVEVLKISPLLEKFADNF-----THRDFLGAVMNLGIDRSTV 120
Query: 186 GDIILQNK 193
GD L+ K
Sbjct: 121 GDFFLEGK 128
>gi|308173503|ref|YP_003920208.1| shape determination protein [Bacillus amyloliquefaciens DSM 7]
gi|384159478|ref|YP_005541551.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus amyloliquefaciens TA208]
gi|384164087|ref|YP_005545466.1| hypothetical protein LL3_01698 [Bacillus amyloliquefaciens LL3]
gi|384168525|ref|YP_005549903.1| hypothetical protein BAXH7_01923 [Bacillus amyloliquefaciens XH7]
gi|307606367|emb|CBI42738.1| factor involved in shape determination, RNA-binding fold [Bacillus
amyloliquefaciens DSM 7]
gi|328553566|gb|AEB24058.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus amyloliquefaciens TA208]
gi|328911642|gb|AEB63238.1| factor involved in shape determination, RNA-binding fold [Bacillus
amyloliquefaciens LL3]
gi|341827804|gb|AEK89055.1| hypothetical protein BAXH7_01923 [Bacillus amyloliquefaciens XH7]
Length = 256
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSV 139
+ +LE + + + +DFL P +E ++ + D +A GGY +AER R ++
Sbjct: 16 IDQVLEWKQIVQDQYRMKLTDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AI 71
Query: 140 GHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+PE + + D + A + F H LGS++G G+ R+K GD+I +
Sbjct: 72 LYPEYMEPEQDDFELRAFEVQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIFSEEA 128
>gi|423612112|ref|ZP_17587973.1| hypothetical protein IIM_02827 [Bacillus cereus VD107]
gi|401247119|gb|EJR53463.1| hypothetical protein IIM_02827 [Bacillus cereus VD107]
Length = 255
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + DV G P+AER R ++
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQE 125
>gi|229140546|ref|ZP_04269101.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST26]
gi|229198009|ref|ZP_04324723.1| RNA-binding S4 domain protein [Bacillus cereus m1293]
gi|228585488|gb|EEK43592.1| RNA-binding S4 domain protein [Bacillus cereus m1293]
gi|228643107|gb|EEK99383.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST26]
Length = 241
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+RA+ +V +DFL P + M + + DV G QAER R ++ +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVAVQFDGATSQAERKR-ALIYPDYLVIN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 111
>gi|157413918|ref|YP_001484784.1| RNA-binding S4 [Prochlorococcus marinus str. MIT 9215]
gi|157388493|gb|ABV51198.1| RNA-binding S4 [Prochlorococcus marinus str. MIT 9215]
Length = 263
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 69 LKGV-GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
LKG+ + N +E + ++ +A A E + F + V +E + E L D K G
Sbjct: 4 LKGILINSNYKKETEELINIANLAYKHWETYWTGFNSTYVCEEILKDFENLNDFKFFIHG 63
Query: 128 GYPQAERCRLSVGHPEALTSDPDIVA------ALSITGNFGFQPCSHGDFLGSILGTGIA 181
G+ ++R +++ + + + D++ + GNF F + DF ++ G+
Sbjct: 64 GFSSSQRSKIACFRGDNI-PEEDVLKNNFPAQGIKFYGNFLFDNATQDDFRSLLIENGVN 122
Query: 182 REKIGDI 188
+ K+GDI
Sbjct: 123 KVKVGDI 129
>gi|423395802|ref|ZP_17373003.1| hypothetical protein ICU_01496 [Bacillus cereus BAG2X1-1]
gi|423406678|ref|ZP_17383827.1| hypothetical protein ICY_01363 [Bacillus cereus BAG2X1-3]
gi|401653544|gb|EJS71088.1| hypothetical protein ICU_01496 [Bacillus cereus BAG2X1-1]
gi|401659968|gb|EJS77451.1| hypothetical protein ICY_01363 [Bacillus cereus BAG2X1-3]
Length = 255
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +R + +V +DFL P + M + + DV G P AER R ++
Sbjct: 15 VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGATPHAERRR-AII 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|427405920|ref|ZP_18896125.1| hypothetical protein HMPREF9161_00485 [Selenomonas sp. F0473]
gi|425708761|gb|EKU71800.1| hypothetical protein HMPREF9161_00485 [Selenomonas sp. F0473]
Length = 264
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 71 GVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYP 130
G G++ A+ +L++A R+ S FL P + + ++ GGY
Sbjct: 16 GEGEETAV----RLLDLAESVMKTRKFRISPFLDPYGQEIAETVRASFDGLRLDFDGGYA 71
Query: 131 QAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
AER R + H + A T +A ++ N F SH D LG+++G GIAR+ +GDI+
Sbjct: 72 GAERQRAMLRHEDFAGTPGGYEIACVAAAWNGQFARLSHRDVLGAVMGLGIARDGVGDIL 131
Query: 190 L 190
+
Sbjct: 132 V 132
>gi|229031529|ref|ZP_04187529.1| RNA-binding S4 domain protein [Bacillus cereus AH1271]
gi|228729818|gb|EEL80798.1| RNA-binding S4 domain protein [Bacillus cereus AH1271]
Length = 241
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+R + +V +DFL P + M + + DV G P AER R + +P+ L +
Sbjct: 8 KRVAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDVSVQFDGATPHAERKRALI-YPDYLVVN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 111
>gi|254525647|ref|ZP_05137699.1| photosystem II S4 domain protein [Prochlorococcus marinus str. MIT
9202]
gi|221537071|gb|EEE39524.1| photosystem II S4 domain protein [Prochlorococcus marinus str. MIT
9202]
Length = 263
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 69 LKGV-GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127
LKG+ + N +E + ++ +A A E + F + V +E + E L D K G
Sbjct: 4 LKGILINSNYKKETEELINIANLAYKHWETYWTGFNSTYVCEEILKDFENLNDFKFFIYG 63
Query: 128 GYPQAERCRLSVGHPEALTSDPDIVAA------LSITGNFGFQPCSHGDFLGSILGTGIA 181
G+ ++R +++ + + + D++ + + GNF F + DF ++ G+
Sbjct: 64 GFSSSQRSKIACFRRDNI-PEEDMLKSNFPAQGIKFYGNFLFDNATQDDFRSLLIENGVN 122
Query: 182 REKIGDI 188
+ K+GDI
Sbjct: 123 KVKVGDI 129
>gi|160933114|ref|ZP_02080503.1| hypothetical protein CLOLEP_01957 [Clostridium leptum DSM 753]
gi|156868188|gb|EDO61560.1| hypothetical protein CLOLEP_01957 [Clostridium leptum DSM 753]
Length = 257
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPC-SHGDFLGSILGTGIAREKI 185
GGY A+R R+ P+ L D + +SI +F + SH DFLG+++G GI RE +
Sbjct: 63 GGYEDAQR-RMFAAFPKELLPDSERFPVISIYLSFRKEDSLSHRDFLGALMGLGIKREAL 121
Query: 186 GDIIL 190
GDI++
Sbjct: 122 GDILV 126
>gi|323486919|ref|ZP_08092235.1| hypothetical protein HMPREF9474_03986 [Clostridium symbiosum
WAL-14163]
gi|323399782|gb|EGA92164.1| hypothetical protein HMPREF9474_03986 [Clostridium symbiosum
WAL-14163]
Length = 251
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMM---ALEKLADVKAVAQGGYP 130
DK+ K I E+A R ++DFLT L E + L V + GGY
Sbjct: 3 DKDEQLLKKRISELAALCYQRDIRSYTDFLT---LNEQTIFHSMKRTLPPVTWLMGGGYE 59
Query: 131 QAER---CRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGD 187
AER C L E I+ A+ + F + +H DFLG+I+ GI+R IGD
Sbjct: 60 TAERKIVCFLPSYEDETADLSISILEAVPASPRFA-EALTHRDFLGAIMNLGISRSCIGD 118
Query: 188 IILQNKG 194
I++ G
Sbjct: 119 ILMNENG 125
>gi|423649759|ref|ZP_17625329.1| hypothetical protein IKA_03546 [Bacillus cereus VD169]
gi|401283039|gb|EJR88936.1| hypothetical protein IKA_03546 [Bacillus cereus VD169]
Length = 255
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +RA+ +V +DFL P + M + + D+ G P AER R +
Sbjct: 15 VDKVLEW-KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDIAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|431185990|ref|ZP_19500053.1| S4 domain-containing protein [Enterococcus faecium E1620]
gi|430572975|gb|ELB11810.1| S4 domain-containing protein [Enterococcus faecium E1620]
Length = 260
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
++FL P + + +D++ + GGY QAER C + + E + D + A I
Sbjct: 36 TEFLDPRQSYILETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVKEDFE-TALYEI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG+++GTGI R GDII
Sbjct: 95 HYPSKFASLSHGKILGTLVGTGIKRSYFGDII 126
>gi|425056577|ref|ZP_18460028.1| S4 domain protein [Enterococcus faecium 505]
gi|403031607|gb|EJY43207.1| S4 domain protein [Enterococcus faecium 505]
Length = 260
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
++FL P + + +D++ + GGY QAER C + + E + D + A I
Sbjct: 36 TEFLDPRQSYILETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TALYEI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG+++GTGI R GDII
Sbjct: 95 HYPSKFASLSHGKILGTLVGTGIKRSYFGDII 126
>gi|431765945|ref|ZP_19554444.1| S4 domain-containing protein [Enterococcus faecium E4215]
gi|430627388|gb|ELB63890.1| S4 domain-containing protein [Enterococcus faecium E4215]
Length = 260
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
++FL P + + +D++ + GGY QAER C + + E + D + A I
Sbjct: 36 TEFLDPRQSYILETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVKEDFE-TALYEI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG+++GTGI R GDII
Sbjct: 95 HYPSKFASLSHGKILGTLVGTGIKRSYFGDII 126
>gi|422698173|ref|ZP_16756093.1| S4 domain protein [Enterococcus faecalis TX1346]
gi|315173285|gb|EFU17302.1| S4 domain protein [Enterococcus faecalis TX1346]
Length = 260
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + +D+ GGY QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG+++ G+ RE GDII
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDII 126
>gi|256957094|ref|ZP_05561265.1| RNA-binding protein S4 [Enterococcus faecalis DS5]
gi|422711803|ref|ZP_16768730.1| S4 domain protein [Enterococcus faecalis TX0027]
gi|256947590|gb|EEU64222.1| RNA-binding protein S4 [Enterococcus faecalis DS5]
gi|315034230|gb|EFT46162.1| S4 domain protein [Enterococcus faecalis TX0027]
Length = 260
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + +D+ GGY QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG+++ G+ RE GDII
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDII 126
>gi|251780297|ref|ZP_04823217.1| S4 domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243084612|gb|EES50502.1| S4 domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 254
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
V ++F +P + E ++ K +G + ER +S + + P + L
Sbjct: 34 VFGNNFYSPKIWSWFKENCEN-SEFKVTCEGIFKDCERKMISFNN---IYDIPFPIKLLK 89
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ G F H DFLG IL GI R KIGD+I+++
Sbjct: 90 VQGKSKFSNLEHKDFLGGILSLGIERNKIGDLIVED 125
>gi|425058743|ref|ZP_18462119.1| S4 domain protein [Enterococcus faecium 504]
gi|431446024|ref|ZP_19513706.1| S4 domain-containing protein [Enterococcus faecium E1630]
gi|431760585|ref|ZP_19549182.1| S4 domain-containing protein [Enterococcus faecium E3346]
gi|403037598|gb|EJY48863.1| S4 domain protein [Enterococcus faecium 504]
gi|430585668|gb|ELB23940.1| S4 domain-containing protein [Enterococcus faecium E1630]
gi|430623670|gb|ELB60348.1| S4 domain-containing protein [Enterococcus faecium E3346]
Length = 260
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
++FL P + + +D++ + GGY QAER C + + E + D + A I
Sbjct: 36 TEFLDPRQSYILETLIRQSSDLRFMFYGGYKQAERKRCLIFPDYYEPVEEDFE-TALYEI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG+++GTGI R GDII
Sbjct: 95 HYPSKFASLSHGKILGTLVGTGIKRSYFGDII 126
>gi|365157067|ref|ZP_09353348.1| hypothetical protein HMPREF1015_00758 [Bacillus smithii 7_3_47FAA]
gi|363625801|gb|EHL76812.1| hypothetical protein HMPREF1015_00758 [Bacillus smithii 7_3_47FAA]
Length = 258
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E + +LE R+ + DFL P + L K +V GG QAER R
Sbjct: 14 EFIDDVLESIRQVEEKYAPKLMDFLDPREQQILSSLLGKNTEVNVSFFGGTVQAERKRAL 73
Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGF 195
+ P D VA I F +H D LGS++G G+ REK GDI+ + F
Sbjct: 74 LYPPYFSVQQEDFQVALFEILYPQKFVVLNHRDVLGSLMGLGLRREKFGDILAKEGRF 131
>gi|375089438|ref|ZP_09735764.1| hypothetical protein HMPREF9708_00154 [Facklamia languida CCUG
37842]
gi|374566836|gb|EHR38070.1| hypothetical protein HMPREF9708_00154 [Facklamia languida CCUG
37842]
Length = 260
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP---VLKESMMALEKLADVKAVAQGGYPQAERCRL 137
V + + +ASS + + FLTP ++K+ + E D++ GGYP AER R
Sbjct: 17 VDQVFDWLTQASSLYSPVLTPFLTPREGLIVKQIVNGYE---DLQVELTGGYPSAERQRA 73
Query: 138 SVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ D +A + I F +H LGS++ TGI R+++GDI+
Sbjct: 74 LIYPLYYQVQLEDFSLAYMQIHYPHKFGELTHQQILGSVMATGIKRDRLGDIM 126
>gi|261206526|ref|ZP_05921226.1| RNA binding protein S4 [Enterococcus faecium TC 6]
gi|289565436|ref|ZP_06445885.1| RNA-binding S4 domain-containing protein [Enterococcus faecium
D344SRF]
gi|294614703|ref|ZP_06694605.1| S4 domain protein [Enterococcus faecium E1636]
gi|294618999|ref|ZP_06698494.1| S4 domain protein [Enterococcus faecium E1679]
gi|430851041|ref|ZP_19468797.1| S4 domain-containing protein [Enterococcus faecium E1185]
gi|431677802|ref|ZP_19524400.1| S4 domain-containing protein [Enterococcus faecium E1904]
gi|260079236|gb|EEW66927.1| RNA binding protein S4 [Enterococcus faecium TC 6]
gi|289162765|gb|EFD10616.1| RNA-binding S4 domain-containing protein [Enterococcus faecium
D344SRF]
gi|291592441|gb|EFF24048.1| S4 domain protein [Enterococcus faecium E1636]
gi|291594660|gb|EFF26042.1| S4 domain protein [Enterococcus faecium E1679]
gi|430534798|gb|ELA75233.1| S4 domain-containing protein [Enterococcus faecium E1185]
gi|430599295|gb|ELB37006.1| S4 domain-containing protein [Enterococcus faecium E1904]
Length = 260
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
++FL P + + +D++ + GGY QAER C + + E + D + A I
Sbjct: 36 TEFLDPRQSYILETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TALYEI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG+++GTGI R GDII
Sbjct: 95 HYPSKFASLSHGKILGTLVGTGIKRSYFGDII 126
>gi|257899130|ref|ZP_05678783.1| RNA binding protein S4 [Enterococcus faecium Com15]
gi|293571725|ref|ZP_06682744.1| S4 domain protein [Enterococcus faecium E980]
gi|430840726|ref|ZP_19458649.1| S4 domain-containing protein [Enterococcus faecium E1007]
gi|431066287|ref|ZP_19493910.1| S4 domain-containing protein [Enterococcus faecium E1604]
gi|431099331|ref|ZP_19496497.1| S4 domain-containing protein [Enterococcus faecium E1613]
gi|431594952|ref|ZP_19522058.1| S4 domain-containing protein [Enterococcus faecium E1861]
gi|431738282|ref|ZP_19527227.1| S4 domain-containing protein [Enterococcus faecium E1972]
gi|431741883|ref|ZP_19530783.1| S4 domain-containing protein [Enterococcus faecium E2039]
gi|257837042|gb|EEV62116.1| RNA binding protein S4 [Enterococcus faecium Com15]
gi|291608182|gb|EFF37485.1| S4 domain protein [Enterococcus faecium E980]
gi|430494932|gb|ELA71150.1| S4 domain-containing protein [Enterococcus faecium E1007]
gi|430568326|gb|ELB07374.1| S4 domain-containing protein [Enterococcus faecium E1604]
gi|430570832|gb|ELB09771.1| S4 domain-containing protein [Enterococcus faecium E1613]
gi|430590878|gb|ELB28924.1| S4 domain-containing protein [Enterococcus faecium E1861]
gi|430597720|gb|ELB35503.1| S4 domain-containing protein [Enterococcus faecium E1972]
gi|430601036|gb|ELB38658.1| S4 domain-containing protein [Enterococcus faecium E2039]
Length = 260
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
++FL P + + +D++ + GGY QAER C + + E + D + A I
Sbjct: 36 TEFLDPRQSYILETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TALYEI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG+++GTGI R GDII
Sbjct: 95 HYPSKFASLSHGKILGTLVGTGIKRSYFGDII 126
>gi|163814735|ref|ZP_02206124.1| hypothetical protein COPEUT_00886 [Coprococcus eutactus ATCC 27759]
gi|158450370|gb|EDP27365.1| hypothetical protein COPEUT_00886 [Coprococcus eutactus ATCC 27759]
Length = 301
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
++A A ++ +++FL+ + +++L+ V GG ER ++ G+
Sbjct: 55 DLANAAYTQNRYTYTNFLSAADIDVFYSNMDELSFVGYKLFGGREGCERVMIAFGNESDC 114
Query: 146 TSDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+P IV A ++ F + +H DFLG+++ GI RE IGDI++
Sbjct: 115 GYEPTFPIAIVKAAAVQDKFS-EDLNHRDFLGALMNLGIEREMIGDILV 162
>gi|69244706|ref|ZP_00602970.1| RNA-binding S4 [Enterococcus faecium DO]
gi|257879374|ref|ZP_05659027.1| RNA binding protein S4 [Enterococcus faecium 1,230,933]
gi|257881760|ref|ZP_05661413.1| RNA binding protein S4 [Enterococcus faecium 1,231,502]
gi|257885186|ref|ZP_05664839.1| RNA binding protein S4 [Enterococcus faecium 1,231,501]
gi|257890200|ref|ZP_05669853.1| RNA binding protein S4 [Enterococcus faecium 1,231,410]
gi|257893528|ref|ZP_05673181.1| RNA binding protein S4 [Enterococcus faecium 1,231,408]
gi|260558816|ref|ZP_05831005.1| RNA binding protein S4 [Enterococcus faecium C68]
gi|293553193|ref|ZP_06673830.1| S4 domain protein [Enterococcus faecium E1039]
gi|293560466|ref|ZP_06676958.1| S4 domain protein [Enterococcus faecium E1162]
gi|293568292|ref|ZP_06679616.1| S4 domain protein [Enterococcus faecium E1071]
gi|294621611|ref|ZP_06700776.1| S4 domain protein [Enterococcus faecium U0317]
gi|314937863|ref|ZP_07845179.1| S4 domain protein [Enterococcus faecium TX0133a04]
gi|314941354|ref|ZP_07848247.1| S4 domain protein [Enterococcus faecium TX0133C]
gi|314950113|ref|ZP_07853399.1| S4 domain protein [Enterococcus faecium TX0082]
gi|314951346|ref|ZP_07854400.1| S4 domain protein [Enterococcus faecium TX0133A]
gi|314992823|ref|ZP_07858224.1| S4 domain protein [Enterococcus faecium TX0133B]
gi|314997983|ref|ZP_07862878.1| S4 domain protein [Enterococcus faecium TX0133a01]
gi|383328093|ref|YP_005353977.1| S4 domain-containing protein [Enterococcus faecium Aus0004]
gi|389867983|ref|YP_006375406.1| 30S ribosomal protein S4e [Enterococcus faecium DO]
gi|406580474|ref|ZP_11055667.1| S4 domain-containing protein [Enterococcus sp. GMD4E]
gi|406582691|ref|ZP_11057789.1| S4 domain-containing protein [Enterococcus sp. GMD3E]
gi|406584966|ref|ZP_11059962.1| S4 domain-containing protein [Enterococcus sp. GMD2E]
gi|406590349|ref|ZP_11064718.1| S4 domain-containing protein [Enterococcus sp. GMD1E]
gi|410937026|ref|ZP_11368888.1| 30S ribosomal protein S4e [Enterococcus sp. GMD5E]
gi|415898393|ref|ZP_11551278.1| S4 domain protein [Enterococcus faecium E4453]
gi|416130928|ref|ZP_11597591.1| S4 domain protein [Enterococcus faecium E4452]
gi|424789435|ref|ZP_18216089.1| S4 domain protein [Enterococcus faecium V689]
gi|424809970|ref|ZP_18235338.1| S4 domain protein [Enterococcus faecium S447]
gi|424826042|ref|ZP_18250983.1| S4 domain protein [Enterococcus faecium R501]
gi|424859457|ref|ZP_18283465.1| S4 domain protein [Enterococcus faecium R499]
gi|424901153|ref|ZP_18324690.1| S4 domain protein [Enterococcus faecium R497]
gi|424951728|ref|ZP_18366796.1| S4 domain protein [Enterococcus faecium R496]
gi|424955098|ref|ZP_18369958.1| S4 domain protein [Enterococcus faecium R494]
gi|424958662|ref|ZP_18373298.1| S4 domain protein [Enterococcus faecium R446]
gi|424959601|ref|ZP_18374179.1| S4 domain protein [Enterococcus faecium P1986]
gi|424964062|ref|ZP_18378203.1| S4 domain protein [Enterococcus faecium P1190]
gi|424969217|ref|ZP_18382800.1| S4 domain protein [Enterococcus faecium P1140]
gi|424971987|ref|ZP_18385384.1| S4 domain protein [Enterococcus faecium P1139]
gi|424973331|ref|ZP_18386619.1| S4 domain protein [Enterococcus faecium P1137]
gi|424977779|ref|ZP_18390764.1| S4 domain protein [Enterococcus faecium P1123]
gi|424982082|ref|ZP_18394765.1| S4 domain protein [Enterococcus faecium ERV99]
gi|424985815|ref|ZP_18398275.1| S4 domain protein [Enterococcus faecium ERV69]
gi|424988378|ref|ZP_18400700.1| S4 domain protein [Enterococcus faecium ERV38]
gi|424990629|ref|ZP_18402835.1| S4 domain protein [Enterococcus faecium ERV26]
gi|424994834|ref|ZP_18406753.1| S4 domain protein [Enterococcus faecium ERV168]
gi|424998820|ref|ZP_18410483.1| S4 domain protein [Enterococcus faecium ERV165]
gi|425002663|ref|ZP_18414083.1| S4 domain protein [Enterococcus faecium ERV161]
gi|425004807|ref|ZP_18416092.1| S4 domain protein [Enterococcus faecium ERV102]
gi|425007879|ref|ZP_18418994.1| S4 domain protein [Enterococcus faecium ERV1]
gi|425009763|ref|ZP_18420757.1| S4 domain protein [Enterococcus faecium E422]
gi|425014536|ref|ZP_18425210.1| S4 domain protein [Enterococcus faecium E417]
gi|425019156|ref|ZP_18429542.1| S4 domain protein [Enterococcus faecium C621]
gi|425019565|ref|ZP_18429913.1| S4 domain protein [Enterococcus faecium C497]
gi|425023876|ref|ZP_18433971.1| S4 domain protein [Enterococcus faecium C1904]
gi|425031128|ref|ZP_18436271.1| S4 domain protein [Enterococcus faecium 515]
gi|425036628|ref|ZP_18441370.1| S4 domain protein [Enterococcus faecium 514]
gi|425039755|ref|ZP_18444259.1| S4 domain protein [Enterococcus faecium 513]
gi|425043084|ref|ZP_18447353.1| S4 domain protein [Enterococcus faecium 511]
gi|425046437|ref|ZP_18450453.1| S4 domain protein [Enterococcus faecium 510]
gi|425048714|ref|ZP_18452605.1| S4 domain protein [Enterococcus faecium 509]
gi|425052483|ref|ZP_18456088.1| S4 domain protein [Enterococcus faecium 506]
gi|425061064|ref|ZP_18464329.1| S4 domain protein [Enterococcus faecium 503]
gi|427395406|ref|ZP_18888328.1| hypothetical protein HMPREF9307_00504 [Enterococcus durans
FB129-CNAB-4]
gi|430821334|ref|ZP_19439945.1| S4 domain-containing protein [Enterococcus faecium E0045]
gi|430824069|ref|ZP_19442636.1| S4 domain-containing protein [Enterococcus faecium E0120]
gi|430829505|ref|ZP_19447598.1| S4 domain-containing protein [Enterococcus faecium E0269]
gi|430831540|ref|ZP_19449591.1| S4 domain-containing protein [Enterococcus faecium E0333]
gi|430833721|ref|ZP_19451732.1| S4 domain-containing protein [Enterococcus faecium E0679]
gi|430837031|ref|ZP_19455007.1| S4 domain-containing protein [Enterococcus faecium E0680]
gi|430839109|ref|ZP_19457051.1| S4 domain-containing protein [Enterococcus faecium E0688]
gi|430844773|ref|ZP_19462670.1| S4 domain-containing protein [Enterococcus faecium E1050]
gi|430846891|ref|ZP_19464745.1| S4 domain-containing protein [Enterococcus faecium E1133]
gi|430853479|ref|ZP_19471207.1| S4 domain-containing protein [Enterococcus faecium E1258]
gi|430856778|ref|ZP_19474462.1| S4 domain-containing protein [Enterococcus faecium E1392]
gi|430859680|ref|ZP_19477289.1| S4 domain-containing protein [Enterococcus faecium E1552]
gi|430862432|ref|ZP_19479749.1| S4 domain-containing protein [Enterococcus faecium E1573]
gi|430867382|ref|ZP_19482376.1| S4 domain-containing protein [Enterococcus faecium E1574]
gi|430869880|ref|ZP_19483035.1| S4 domain-containing protein [Enterococcus faecium E1575]
gi|430963172|ref|ZP_19487464.1| S4 domain-containing protein [Enterococcus faecium E1576]
gi|431011090|ref|ZP_19489834.1| S4 domain-containing protein [Enterococcus faecium E1578]
gi|431237083|ref|ZP_19503226.1| S4 domain-containing protein [Enterococcus faecium E1622]
gi|431264018|ref|ZP_19505906.1| S4 domain-containing protein [Enterococcus faecium E1623]
gi|431290540|ref|ZP_19506675.1| S4 domain-containing protein [Enterococcus faecium E1626]
gi|431382762|ref|ZP_19511355.1| S4 domain-containing protein [Enterococcus faecium E1627]
gi|431523808|ref|ZP_19516833.1| S4 domain-containing protein [Enterococcus faecium E1634]
gi|431536449|ref|ZP_19517409.1| S4 domain-containing protein [Enterococcus faecium E1731]
gi|431743241|ref|ZP_19532121.1| S4 domain-containing protein [Enterococcus faecium E2071]
gi|431745479|ref|ZP_19534323.1| S4 domain-containing protein [Enterococcus faecium E2134]
gi|431747873|ref|ZP_19536637.1| S4 domain-containing protein [Enterococcus faecium E2297]
gi|431754100|ref|ZP_19542765.1| S4 domain-containing protein [Enterococcus faecium E2883]
gi|431768786|ref|ZP_19557219.1| S4 domain-containing protein [Enterococcus faecium E1321]
gi|431770078|ref|ZP_19558481.1| S4 domain-containing protein [Enterococcus faecium E1644]
gi|431774394|ref|ZP_19562702.1| S4 domain-containing protein [Enterococcus faecium E2369]
gi|431777051|ref|ZP_19565308.1| S4 domain-containing protein [Enterococcus faecium E2560]
gi|431781358|ref|ZP_19569506.1| S4 domain-containing protein [Enterococcus faecium E6012]
gi|431784989|ref|ZP_19573024.1| S4 domain-containing protein [Enterococcus faecium E6045]
gi|447913352|ref|YP_007394764.1| hypothetical protein M7W_2098 [Enterococcus faecium NRRL B-2354]
gi|68196297|gb|EAN10726.1| RNA-binding S4 [Enterococcus faecium DO]
gi|257813602|gb|EEV42360.1| RNA binding protein S4 [Enterococcus faecium 1,230,933]
gi|257817418|gb|EEV44746.1| RNA binding protein S4 [Enterococcus faecium 1,231,502]
gi|257821038|gb|EEV48172.1| RNA binding protein S4 [Enterococcus faecium 1,231,501]
gi|257826560|gb|EEV53186.1| RNA binding protein S4 [Enterococcus faecium 1,231,410]
gi|257829907|gb|EEV56514.1| RNA binding protein S4 [Enterococcus faecium 1,231,408]
gi|260075275|gb|EEW63588.1| RNA binding protein S4 [Enterococcus faecium C68]
gi|291589004|gb|EFF20828.1| S4 domain protein [Enterococcus faecium E1071]
gi|291598776|gb|EFF29828.1| S4 domain protein [Enterococcus faecium U0317]
gi|291602603|gb|EFF32818.1| S4 domain protein [Enterococcus faecium E1039]
gi|291605614|gb|EFF35056.1| S4 domain protein [Enterococcus faecium E1162]
gi|313587995|gb|EFR66840.1| S4 domain protein [Enterococcus faecium TX0133a01]
gi|313592627|gb|EFR71472.1| S4 domain protein [Enterococcus faecium TX0133B]
gi|313596563|gb|EFR75408.1| S4 domain protein [Enterococcus faecium TX0133A]
gi|313599777|gb|EFR78620.1| S4 domain protein [Enterococcus faecium TX0133C]
gi|313642721|gb|EFS07301.1| S4 domain protein [Enterococcus faecium TX0133a04]
gi|313643554|gb|EFS08134.1| S4 domain protein [Enterococcus faecium TX0082]
gi|364090061|gb|EHM32692.1| S4 domain protein [Enterococcus faecium E4453]
gi|364093803|gb|EHM36039.1| S4 domain protein [Enterococcus faecium E4452]
gi|378937787|gb|AFC62859.1| S4 domain protein [Enterococcus faecium Aus0004]
gi|388533232|gb|AFK58424.1| ribosomal protein S4e [Enterococcus faecium DO]
gi|402918203|gb|EJX38917.1| S4 domain protein [Enterococcus faecium S447]
gi|402922115|gb|EJX42520.1| S4 domain protein [Enterococcus faecium V689]
gi|402924711|gb|EJX44903.1| S4 domain protein [Enterococcus faecium R501]
gi|402926489|gb|EJX46525.1| S4 domain protein [Enterococcus faecium R499]
gi|402928949|gb|EJX48755.1| S4 domain protein [Enterococcus faecium R496]
gi|402931322|gb|EJX50908.1| S4 domain protein [Enterococcus faecium R497]
gi|402934985|gb|EJX54278.1| S4 domain protein [Enterococcus faecium R494]
gi|402939559|gb|EJX58464.1| S4 domain protein [Enterococcus faecium R446]
gi|402947476|gb|EJX65684.1| S4 domain protein [Enterococcus faecium P1190]
gi|402949173|gb|EJX67254.1| S4 domain protein [Enterococcus faecium P1140]
gi|402950115|gb|EJX68130.1| S4 domain protein [Enterococcus faecium P1986]
gi|402956926|gb|EJX74349.1| S4 domain protein [Enterococcus faecium P1139]
gi|402958967|gb|EJX76248.1| S4 domain protein [Enterococcus faecium P1137]
gi|402961838|gb|EJX78833.1| S4 domain protein [Enterococcus faecium ERV99]
gi|402964521|gb|EJX81295.1| S4 domain protein [Enterococcus faecium P1123]
gi|402965066|gb|EJX81804.1| S4 domain protein [Enterococcus faecium ERV69]
gi|402972077|gb|EJX88302.1| S4 domain protein [Enterococcus faecium ERV38]
gi|402978932|gb|EJX94633.1| S4 domain protein [Enterococcus faecium ERV168]
gi|402979117|gb|EJX94804.1| S4 domain protein [Enterococcus faecium ERV26]
gi|402981857|gb|EJX97364.1| S4 domain protein [Enterococcus faecium ERV165]
gi|402982846|gb|EJX98283.1| S4 domain protein [Enterococcus faecium ERV161]
gi|402988452|gb|EJY03459.1| S4 domain protein [Enterococcus faecium ERV102]
gi|402994304|gb|EJY08847.1| S4 domain protein [Enterococcus faecium ERV1]
gi|402998603|gb|EJY12852.1| S4 domain protein [Enterococcus faecium E417]
gi|402999201|gb|EJY13403.1| S4 domain protein [Enterococcus faecium C621]
gi|403002017|gb|EJY16030.1| S4 domain protein [Enterococcus faecium E422]
gi|403008484|gb|EJY21988.1| S4 domain protein [Enterococcus faecium C1904]
gi|403011116|gb|EJY24445.1| S4 domain protein [Enterococcus faecium C497]
gi|403014169|gb|EJY27187.1| S4 domain protein [Enterococcus faecium 514]
gi|403014741|gb|EJY27711.1| S4 domain protein [Enterococcus faecium 513]
gi|403016297|gb|EJY29121.1| S4 domain protein [Enterococcus faecium 515]
gi|403021323|gb|EJY33790.1| S4 domain protein [Enterococcus faecium 511]
gi|403024300|gb|EJY36470.1| S4 domain protein [Enterococcus faecium 510]
gi|403030029|gb|EJY41749.1| S4 domain protein [Enterococcus faecium 509]
gi|403034275|gb|EJY45738.1| S4 domain protein [Enterococcus faecium 506]
gi|403042001|gb|EJY52977.1| S4 domain protein [Enterococcus faecium 503]
gi|404453851|gb|EKA00883.1| S4 domain-containing protein [Enterococcus sp. GMD4E]
gi|404457681|gb|EKA04211.1| S4 domain-containing protein [Enterococcus sp. GMD3E]
gi|404463185|gb|EKA08881.1| S4 domain-containing protein [Enterococcus sp. GMD2E]
gi|404469418|gb|EKA14224.1| S4 domain-containing protein [Enterococcus sp. GMD1E]
gi|410734619|gb|EKQ76538.1| 30S ribosomal protein S4e [Enterococcus sp. GMD5E]
gi|425723906|gb|EKU86792.1| hypothetical protein HMPREF9307_00504 [Enterococcus durans
FB129-CNAB-4]
gi|430438597|gb|ELA49014.1| S4 domain-containing protein [Enterococcus faecium E0045]
gi|430441453|gb|ELA51550.1| S4 domain-containing protein [Enterococcus faecium E0120]
gi|430480944|gb|ELA58115.1| S4 domain-containing protein [Enterococcus faecium E0269]
gi|430481423|gb|ELA58579.1| S4 domain-containing protein [Enterococcus faecium E0333]
gi|430486126|gb|ELA62994.1| S4 domain-containing protein [Enterococcus faecium E0679]
gi|430487812|gb|ELA64520.1| S4 domain-containing protein [Enterococcus faecium E0680]
gi|430491106|gb|ELA67588.1| S4 domain-containing protein [Enterococcus faecium E0688]
gi|430496204|gb|ELA72309.1| S4 domain-containing protein [Enterococcus faecium E1050]
gi|430538445|gb|ELA78737.1| S4 domain-containing protein [Enterococcus faecium E1133]
gi|430540560|gb|ELA80762.1| S4 domain-containing protein [Enterococcus faecium E1258]
gi|430543217|gb|ELA83292.1| S4 domain-containing protein [Enterococcus faecium E1552]
gi|430543891|gb|ELA83943.1| S4 domain-containing protein [Enterococcus faecium E1392]
gi|430549010|gb|ELA88857.1| S4 domain-containing protein [Enterococcus faecium E1573]
gi|430550393|gb|ELA90189.1| S4 domain-containing protein [Enterococcus faecium E1574]
gi|430555597|gb|ELA95134.1| S4 domain-containing protein [Enterococcus faecium E1576]
gi|430559257|gb|ELA98616.1| S4 domain-containing protein [Enterococcus faecium E1575]
gi|430560112|gb|ELA99418.1| S4 domain-containing protein [Enterococcus faecium E1578]
gi|430572647|gb|ELB11497.1| S4 domain-containing protein [Enterococcus faecium E1622]
gi|430576454|gb|ELB15105.1| S4 domain-containing protein [Enterococcus faecium E1623]
gi|430581133|gb|ELB19580.1| S4 domain-containing protein [Enterococcus faecium E1627]
gi|430582640|gb|ELB21062.1| S4 domain-containing protein [Enterococcus faecium E1626]
gi|430584766|gb|ELB23080.1| S4 domain-containing protein [Enterococcus faecium E1634]
gi|430594936|gb|ELB32888.1| S4 domain-containing protein [Enterococcus faecium E1731]
gi|430607075|gb|ELB44403.1| S4 domain-containing protein [Enterococcus faecium E2071]
gi|430610235|gb|ELB47387.1| S4 domain-containing protein [Enterococcus faecium E2134]
gi|430614749|gb|ELB51720.1| S4 domain-containing protein [Enterococcus faecium E2297]
gi|430620023|gb|ELB56826.1| S4 domain-containing protein [Enterococcus faecium E2883]
gi|430628654|gb|ELB65088.1| S4 domain-containing protein [Enterococcus faecium E1321]
gi|430634143|gb|ELB70278.1| S4 domain-containing protein [Enterococcus faecium E2369]
gi|430635831|gb|ELB71910.1| S4 domain-containing protein [Enterococcus faecium E1644]
gi|430639992|gb|ELB75846.1| S4 domain-containing protein [Enterococcus faecium E2560]
gi|430648545|gb|ELB83951.1| S4 domain-containing protein [Enterococcus faecium E6045]
gi|430649719|gb|ELB85087.1| S4 domain-containing protein [Enterococcus faecium E6012]
gi|445189061|gb|AGE30703.1| hypothetical protein M7W_2098 [Enterococcus faecium NRRL B-2354]
Length = 260
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
++FL P + + +D++ + GGY QAER C + + E + D + A I
Sbjct: 36 TEFLDPRQSYILETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TALYEI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG+++GTGI R GDII
Sbjct: 95 HYPSKFASLSHGKILGTLVGTGIKRSYFGDII 126
>gi|431779317|ref|ZP_19567512.1| S4 domain-containing protein [Enterococcus faecium E4389]
gi|430642172|gb|ELB77953.1| S4 domain-containing protein [Enterococcus faecium E4389]
Length = 260
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
++FL P + + +D++ + GGY QAER C + + E + D + A I
Sbjct: 36 TEFLDPRQSYILETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TALYEI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG+++GTGI R GDII
Sbjct: 95 HYPSKFASLSHGKILGTLVGTGIQRSYFGDII 126
>gi|291546180|emb|CBL19288.1| hypothetical protein CK1_11040 [Ruminococcus sp. SR1/5]
Length = 142
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 12/125 (9%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG--GYPQAERCRLS 138
VK I E+A A R +DFL + + +++ + + A+G GY AER ++
Sbjct: 8 VKRIRELANLAYQRDITTFTDFLN--LNERNILNSQNFHKLGVTAEGFGGYENAER-QMV 64
Query: 139 VGHPEAL--TSDP--DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN-- 192
HP+AL T D D + F + +H D+LG+IL G+ R +GDI++++
Sbjct: 65 AFHPDALAFTWDYPIDCIRLEPKAVKFS-EDLTHRDYLGAILNLGVDRSVVGDILIEDHT 123
Query: 193 KGFLC 197
F C
Sbjct: 124 ASFFC 128
>gi|29375583|ref|NP_814737.1| S4 domain-containing protein [Enterococcus faecalis V583]
gi|227517924|ref|ZP_03947973.1| ribosomal protein S4e [Enterococcus faecalis TX0104]
gi|227555111|ref|ZP_03985158.1| ribosomal protein S4e [Enterococcus faecalis HH22]
gi|229546848|ref|ZP_04435573.1| ribosomal protein S4e [Enterococcus faecalis TX1322]
gi|229548942|ref|ZP_04437667.1| ribosomal protein S4e [Enterococcus faecalis ATCC 29200]
gi|255971455|ref|ZP_05422041.1| S4 domain-containing protein [Enterococcus faecalis T1]
gi|255974070|ref|ZP_05424656.1| RNA-binding S4 [Enterococcus faecalis T2]
gi|256761759|ref|ZP_05502339.1| S4 domain-containing protein [Enterococcus faecalis T3]
gi|256852654|ref|ZP_05558025.1| S4 domain-containing protein [Enterococcus faecalis T8]
gi|256960185|ref|ZP_05564356.1| RNA-binding protein S4 [Enterococcus faecalis Merz96]
gi|256962573|ref|ZP_05566744.1| RNA-binding protein S4 [Enterococcus faecalis HIP11704]
gi|257077890|ref|ZP_05572251.1| RNA-binding protein S4 [Enterococcus faecalis JH1]
gi|257081254|ref|ZP_05575615.1| S4 domain-containing protein [Enterococcus faecalis E1Sol]
gi|257083912|ref|ZP_05578273.1| S4 domain-containing protein [Enterococcus faecalis Fly1]
gi|257086360|ref|ZP_05580721.1| RNA-binding protein S4 [Enterococcus faecalis D6]
gi|257089410|ref|ZP_05583771.1| S4 RNA binding protein [Enterococcus faecalis CH188]
gi|257415620|ref|ZP_05592614.1| RNA-binding protein S4 [Enterococcus faecalis ARO1/DG]
gi|257418591|ref|ZP_05595585.1| S4 RNA binding protein [Enterococcus faecalis T11]
gi|257421250|ref|ZP_05598240.1| S4 RNA binding protein [Enterococcus faecalis X98]
gi|293382550|ref|ZP_06628484.1| YlmH protein [Enterococcus faecalis R712]
gi|293387849|ref|ZP_06632388.1| YlmH protein [Enterococcus faecalis S613]
gi|294779255|ref|ZP_06744659.1| S4 domain protein [Enterococcus faecalis PC1.1]
gi|307268081|ref|ZP_07549469.1| S4 domain protein [Enterococcus faecalis TX4248]
gi|307272015|ref|ZP_07553281.1| S4 domain protein [Enterococcus faecalis TX0855]
gi|307275484|ref|ZP_07556626.1| S4 domain protein [Enterococcus faecalis TX2134]
gi|307278948|ref|ZP_07560007.1| S4 domain protein [Enterococcus faecalis TX0860]
gi|307289397|ref|ZP_07569351.1| S4 domain protein [Enterococcus faecalis TX0109]
gi|307290037|ref|ZP_07569961.1| S4 domain protein [Enterococcus faecalis TX0411]
gi|312901040|ref|ZP_07760331.1| S4 domain protein [Enterococcus faecalis TX0470]
gi|312904563|ref|ZP_07763721.1| S4 domain protein [Enterococcus faecalis TX0635]
gi|312906847|ref|ZP_07765844.1| S4 domain protein [Enterococcus faecalis DAPTO 512]
gi|312952727|ref|ZP_07771589.1| S4 domain protein [Enterococcus faecalis TX0102]
gi|312978898|ref|ZP_07790624.1| S4 domain protein [Enterococcus faecalis DAPTO 516]
gi|384518107|ref|YP_005705412.1| S4 domain-containing protein [Enterococcus faecalis 62]
gi|397699394|ref|YP_006537182.1| S4 domain protein [Enterococcus faecalis D32]
gi|421513308|ref|ZP_15960085.1| hypothetical protein A961_1192 [Enterococcus faecalis ATCC 29212]
gi|422685579|ref|ZP_16743795.1| S4 domain protein [Enterococcus faecalis TX4000]
gi|422689642|ref|ZP_16747746.1| S4 domain protein [Enterococcus faecalis TX0630]
gi|422692291|ref|ZP_16750313.1| S4 domain protein [Enterococcus faecalis TX0031]
gi|422694608|ref|ZP_16752599.1| S4 domain protein [Enterococcus faecalis TX4244]
gi|422703302|ref|ZP_16761124.1| S4 domain protein [Enterococcus faecalis TX1302]
gi|422705611|ref|ZP_16763407.1| S4 domain protein [Enterococcus faecalis TX0043]
gi|422713480|ref|ZP_16770230.1| S4 domain protein [Enterococcus faecalis TX0309A]
gi|422717493|ref|ZP_16774177.1| S4 domain protein [Enterococcus faecalis TX0309B]
gi|422721041|ref|ZP_16777646.1| S4 domain protein [Enterococcus faecalis TX0017]
gi|422722954|ref|ZP_16779503.1| S4 domain protein [Enterococcus faecalis TX2137]
gi|422727525|ref|ZP_16783966.1| S4 domain protein [Enterococcus faecalis TX0312]
gi|422729992|ref|ZP_16786387.1| S4 domain protein [Enterococcus faecalis TX0012]
gi|422735191|ref|ZP_16791465.1| S4 domain protein [Enterococcus faecalis TX1341]
gi|422868629|ref|ZP_16915167.1| S4 domain protein [Enterococcus faecalis TX1467]
gi|424679105|ref|ZP_18115936.1| S4 domain protein [Enterococcus faecalis ERV103]
gi|424682303|ref|ZP_18119078.1| S4 domain protein [Enterococcus faecalis ERV116]
gi|424684054|ref|ZP_18120782.1| S4 domain protein [Enterococcus faecalis ERV129]
gi|424686879|ref|ZP_18123541.1| S4 domain protein [Enterococcus faecalis ERV25]
gi|424690051|ref|ZP_18126587.1| S4 domain protein [Enterococcus faecalis ERV31]
gi|424692289|ref|ZP_18128792.1| S4 domain protein [Enterococcus faecalis ERV37]
gi|424698027|ref|ZP_18134335.1| S4 domain protein [Enterococcus faecalis ERV41]
gi|424700554|ref|ZP_18136738.1| S4 domain protein [Enterococcus faecalis ERV62]
gi|424705582|ref|ZP_18141612.1| S4 domain protein [Enterococcus faecalis ERV63]
gi|424712420|ref|ZP_18144603.1| S4 domain protein [Enterococcus faecalis ERV65]
gi|424716268|ref|ZP_18145581.1| S4 domain protein [Enterococcus faecalis ERV68]
gi|424721631|ref|ZP_18150713.1| S4 domain protein [Enterococcus faecalis ERV72]
gi|424723706|ref|ZP_18152661.1| S4 domain protein [Enterococcus faecalis ERV73]
gi|424729462|ref|ZP_18158063.1| S4 domain protein [Enterococcus faecalis ERV81]
gi|424735079|ref|ZP_18163552.1| S4 domain protein [Enterococcus faecalis ERV85]
gi|424751824|ref|ZP_18179845.1| S4 domain protein [Enterococcus faecalis ERV93]
gi|424757106|ref|ZP_18184870.1| S4 domain protein [Enterococcus faecalis R508]
gi|29343044|gb|AAO80807.1| S4 domain protein [Enterococcus faecalis V583]
gi|227074678|gb|EEI12641.1| ribosomal protein S4e [Enterococcus faecalis TX0104]
gi|227175779|gb|EEI56751.1| ribosomal protein S4e [Enterococcus faecalis HH22]
gi|229305963|gb|EEN71959.1| ribosomal protein S4e [Enterococcus faecalis ATCC 29200]
gi|229308013|gb|EEN74000.1| ribosomal protein S4e [Enterococcus faecalis TX1322]
gi|255962473|gb|EET94949.1| S4 domain-containing protein [Enterococcus faecalis T1]
gi|255966942|gb|EET97564.1| RNA-binding S4 [Enterococcus faecalis T2]
gi|256683010|gb|EEU22705.1| S4 domain-containing protein [Enterococcus faecalis T3]
gi|256711999|gb|EEU27036.1| S4 domain-containing protein [Enterococcus faecalis T8]
gi|256950681|gb|EEU67313.1| RNA-binding protein S4 [Enterococcus faecalis Merz96]
gi|256953069|gb|EEU69701.1| RNA-binding protein S4 [Enterococcus faecalis HIP11704]
gi|256985920|gb|EEU73222.1| RNA-binding protein S4 [Enterococcus faecalis JH1]
gi|256989284|gb|EEU76586.1| S4 domain-containing protein [Enterococcus faecalis E1Sol]
gi|256991942|gb|EEU79244.1| S4 domain-containing protein [Enterococcus faecalis Fly1]
gi|256994390|gb|EEU81692.1| RNA-binding protein S4 [Enterococcus faecalis D6]
gi|256998222|gb|EEU84742.1| S4 RNA binding protein [Enterococcus faecalis CH188]
gi|257157448|gb|EEU87408.1| RNA-binding protein S4 [Enterococcus faecalis ARO1/DG]
gi|257160419|gb|EEU90379.1| S4 RNA binding protein [Enterococcus faecalis T11]
gi|257163074|gb|EEU93034.1| S4 RNA binding protein [Enterococcus faecalis X98]
gi|291080098|gb|EFE17462.1| YlmH protein [Enterococcus faecalis R712]
gi|291082696|gb|EFE19659.1| YlmH protein [Enterococcus faecalis S613]
gi|294453622|gb|EFG22020.1| S4 domain protein [Enterococcus faecalis PC1.1]
gi|295113824|emb|CBL32461.1| Uncharacterized conserved protein, contains S4-like domain
[Enterococcus sp. 7L76]
gi|306498879|gb|EFM68373.1| S4 domain protein [Enterococcus faecalis TX0411]
gi|306499652|gb|EFM69015.1| S4 domain protein [Enterococcus faecalis TX0109]
gi|306504335|gb|EFM73546.1| S4 domain protein [Enterococcus faecalis TX0860]
gi|306507872|gb|EFM77000.1| S4 domain protein [Enterococcus faecalis TX2134]
gi|306511310|gb|EFM80314.1| S4 domain protein [Enterococcus faecalis TX0855]
gi|306515722|gb|EFM84249.1| S4 domain protein [Enterococcus faecalis TX4248]
gi|310627101|gb|EFQ10384.1| S4 domain protein [Enterococcus faecalis DAPTO 512]
gi|310629243|gb|EFQ12526.1| S4 domain protein [Enterococcus faecalis TX0102]
gi|310632076|gb|EFQ15359.1| S4 domain protein [Enterococcus faecalis TX0635]
gi|311288335|gb|EFQ66891.1| S4 domain protein [Enterococcus faecalis DAPTO 516]
gi|311291866|gb|EFQ70422.1| S4 domain protein [Enterococcus faecalis TX0470]
gi|315026977|gb|EFT38909.1| S4 domain protein [Enterococcus faecalis TX2137]
gi|315029690|gb|EFT41622.1| S4 domain protein [Enterococcus faecalis TX4000]
gi|315031713|gb|EFT43645.1| S4 domain protein [Enterococcus faecalis TX0017]
gi|315147952|gb|EFT91968.1| S4 domain protein [Enterococcus faecalis TX4244]
gi|315149523|gb|EFT93539.1| S4 domain protein [Enterococcus faecalis TX0012]
gi|315153077|gb|EFT97093.1| S4 domain protein [Enterococcus faecalis TX0031]
gi|315156850|gb|EFU00867.1| S4 domain protein [Enterococcus faecalis TX0043]
gi|315157636|gb|EFU01653.1| S4 domain protein [Enterococcus faecalis TX0312]
gi|315165134|gb|EFU09151.1| S4 domain protein [Enterococcus faecalis TX1302]
gi|315168033|gb|EFU12050.1| S4 domain protein [Enterococcus faecalis TX1341]
gi|315574255|gb|EFU86446.1| S4 domain protein [Enterococcus faecalis TX0309B]
gi|315577383|gb|EFU89574.1| S4 domain protein [Enterococcus faecalis TX0630]
gi|315581590|gb|EFU93781.1| S4 domain protein [Enterococcus faecalis TX0309A]
gi|323480240|gb|ADX79679.1| S4 domain protein [Enterococcus faecalis 62]
gi|329574343|gb|EGG55915.1| S4 domain protein [Enterococcus faecalis TX1467]
gi|397336033|gb|AFO43705.1| S4 domain protein [Enterococcus faecalis D32]
gi|401673562|gb|EJS79943.1| hypothetical protein A961_1192 [Enterococcus faecalis ATCC 29212]
gi|402349353|gb|EJU84304.1| S4 domain protein [Enterococcus faecalis ERV116]
gi|402349386|gb|EJU84336.1| S4 domain protein [Enterococcus faecalis ERV103]
gi|402362990|gb|EJU97500.1| S4 domain protein [Enterococcus faecalis ERV129]
gi|402365185|gb|EJU99611.1| S4 domain protein [Enterococcus faecalis ERV31]
gi|402366586|gb|EJV00956.1| S4 domain protein [Enterococcus faecalis ERV25]
gi|402373645|gb|EJV07716.1| S4 domain protein [Enterococcus faecalis ERV62]
gi|402373936|gb|EJV07984.1| S4 domain protein [Enterococcus faecalis ERV41]
gi|402378680|gb|EJV12518.1| S4 domain protein [Enterococcus faecalis ERV37]
gi|402379006|gb|EJV12827.1| S4 domain protein [Enterococcus faecalis ERV63]
gi|402380914|gb|EJV14653.1| S4 domain protein [Enterococcus faecalis ERV65]
gi|402388461|gb|EJV21900.1| S4 domain protein [Enterococcus faecalis ERV68]
gi|402390798|gb|EJV24119.1| S4 domain protein [Enterococcus faecalis ERV72]
gi|402393916|gb|EJV27122.1| S4 domain protein [Enterococcus faecalis ERV81]
gi|402397415|gb|EJV30433.1| S4 domain protein [Enterococcus faecalis ERV73]
gi|402404696|gb|EJV37312.1| S4 domain protein [Enterococcus faecalis ERV85]
gi|402405320|gb|EJV37917.1| S4 domain protein [Enterococcus faecalis ERV93]
gi|402407634|gb|EJV40151.1| S4 domain protein [Enterococcus faecalis R508]
Length = 260
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + +D+ GGY QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG+++ G+ RE GDII
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDII 126
>gi|424671133|ref|ZP_18108148.1| S4 domain protein [Enterococcus faecalis 599]
gi|402359693|gb|EJU94318.1| S4 domain protein [Enterococcus faecalis 599]
Length = 260
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + +D+ GGY QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG+++ G+ RE GDII
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDII 126
>gi|256850936|ref|ZP_05556325.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
27-2-CHN]
gi|260661150|ref|ZP_05862064.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
115-3-CHN]
gi|297205816|ref|ZP_06923211.1| cell-division protein [Lactobacillus jensenii JV-V16]
gi|256615998|gb|EEU21186.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
27-2-CHN]
gi|260548087|gb|EEX24063.1| photosystem II S4 domain-containing protein [Lactobacillus jensenii
115-3-CHN]
gi|297148942|gb|EFH29240.1| cell-division protein [Lactobacillus jensenii JV-V16]
Length = 274
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 95 REVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLSVGHPEALTSDPDI- 151
+E + ++FL P + L++LA Q GGY +AE+CR + + +
Sbjct: 41 KEEILTNFLDPG----ARANLKELAQDDFYVQEFGGYDRAEKCRAIIRNDWEYQDVRNFQ 96
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ ++IT N F +H LG+++G+G+ +GDII KG
Sbjct: 97 LKLINITYNHKFATITHSQILGTLVGSGLNLSSLGDIITDGKG 139
>gi|227550465|ref|ZP_03980514.1| ribosomal protein S4e [Enterococcus faecium TX1330]
gi|257888493|ref|ZP_05668146.1| RNA binding protein S4 [Enterococcus faecium 1,141,733]
gi|257897132|ref|ZP_05676785.1| RNA binding protein S4 [Enterococcus faecium Com12]
gi|293377355|ref|ZP_06623559.1| S4 domain protein [Enterococcus faecium PC4.1]
gi|424763055|ref|ZP_18190534.1| S4 domain protein [Enterococcus faecium TX1337RF]
gi|431031532|ref|ZP_19490706.1| S4 domain-containing protein [Enterococcus faecium E1590]
gi|431751286|ref|ZP_19539977.1| S4 domain-containing protein [Enterococcus faecium E2620]
gi|431758414|ref|ZP_19547041.1| S4 domain-containing protein [Enterococcus faecium E3083]
gi|431763887|ref|ZP_19552435.1| S4 domain-containing protein [Enterococcus faecium E3548]
gi|227180366|gb|EEI61338.1| ribosomal protein S4e [Enterococcus faecium TX1330]
gi|257824547|gb|EEV51479.1| RNA binding protein S4 [Enterococcus faecium 1,141,733]
gi|257833697|gb|EEV60118.1| RNA binding protein S4 [Enterococcus faecium Com12]
gi|292644047|gb|EFF62153.1| S4 domain protein [Enterococcus faecium PC4.1]
gi|402423522|gb|EJV55735.1| S4 domain protein [Enterococcus faecium TX1337RF]
gi|430564942|gb|ELB04117.1| S4 domain-containing protein [Enterococcus faecium E1590]
gi|430615726|gb|ELB52669.1| S4 domain-containing protein [Enterococcus faecium E2620]
gi|430617472|gb|ELB54345.1| S4 domain-containing protein [Enterococcus faecium E3083]
gi|430621711|gb|ELB58463.1| S4 domain-containing protein [Enterococcus faecium E3548]
Length = 260
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
++FL P + + +D++ + GGY QAER C + + E + D + A I
Sbjct: 36 TEFLDPRQSYILETLIRQSSDLRFMFYGGYEQAERKRCLIFPDYYEPVEEDFE-TALYEI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG+++GTGI R GDII
Sbjct: 95 HYPSKFASLSHGKILGTLVGTGIKRSYFGDII 126
>gi|346306279|ref|ZP_08848437.1| hypothetical protein HMPREF9457_00146 [Dorea formicigenerans
4_6_53AFAA]
gi|345900084|gb|EGX69912.1| hypothetical protein HMPREF9457_00146 [Dorea formicigenerans
4_6_53AFAA]
Length = 251
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ++E++ A SR V SDFL L + + GGY AER ++
Sbjct: 10 KRLIELSNLAFSRDIVTFSDFLNLNELNILHRTPKDQFKARFETYGGYELAER-QMVAFL 68
Query: 142 PEALTSDPDI-VAALSI---TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
P+AL D + AL I F + +H D+LG+I+ G +R KIGDII + G
Sbjct: 69 PDALYYDYGYPMQALKICPVNKRFA-EDLTHRDYLGAIMNLGTSRTKIGDIIQTDDG 124
>gi|308069866|ref|YP_003871471.1| hypothetical protein PPE_03113 [Paenibacillus polymyxa E681]
gi|305859145|gb|ADM70933.1| Uncharacterized conserved protein, contains S4-like domain
[Paenibacillus polymyxa E681]
Length = 260
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 86 EMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE 143
E A + E +DFL P + E++ + E ++ GGY +ER R +
Sbjct: 22 EWISHAGAYHEQKLTDFLDPRQQYILETLASKEDKVTIRV--DGGYMASERKRALIAPDY 79
Query: 144 ALTSDPDI-VAALSITGN-FGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ ++ + LSIT + HGD+LG++LG GI R KIGDI + + G
Sbjct: 80 SYLDGEEMGIQVLSITSDDHKVGTLEHGDYLGALLGLGIKRGKIGDIHVLDDG 132
>gi|422343049|ref|ZP_16423977.1| hypothetical protein HMPREF9432_00037 [Selenomonas noxia F0398]
gi|355379005|gb|EHG26181.1| hypothetical protein HMPREF9432_00037 [Selenomonas noxia F0398]
Length = 264
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 73 GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
G++ AI +L++A R+ S FL P + + ++ GGY A
Sbjct: 18 GEETAI----RLLDLAESVIKTRKFRISPFLDPYGQEIAETICANYEGIQLDFDGGYAGA 73
Query: 133 ERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
ER R + H + A T D + ++ N F SH D LG+++G GI RE IGDI+
Sbjct: 74 ERQRAMLRHADFAGTPDGFGIVCVAAAWNGQFARLSHRDVLGALMGLGIERESIGDIL 131
>gi|229192067|ref|ZP_04319036.1| RNA-binding S4 domain protein [Bacillus cereus ATCC 10876]
gi|228591393|gb|EEK49243.1| RNA-binding S4 domain protein [Bacillus cereus ATCC 10876]
Length = 241
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+RA+ +V +DFL P + M + + DV G P AER R + +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI-YPDYLELN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 111
>gi|375084577|ref|ZP_09731440.1| hypothetical protein HMPREF9454_00051 [Megamonas funiformis YIT
11815]
gi|374568025|gb|EHR39220.1| hypothetical protein HMPREF9454_00051 [Megamonas funiformis YIT
11815]
Length = 261
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E V +++ + R+ +DFL P + + + + GGY AER +
Sbjct: 18 EIVIKLIDAVEAVNKTRKFRATDFLDPYGCEIAETVVAHYDGISVDFFGGYIGAERQCAN 77
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
H + + ++ + T N F SH D LG+++G GI RE+IGD+++
Sbjct: 78 FVHEDFMGKPSYNISVVKATWNDKFYRLSHRDVLGALMGLGIKREQIGDLLI 129
>gi|333371306|ref|ZP_08463261.1| S4 domain protein [Desmospora sp. 8437]
gi|332976333|gb|EGK13189.1| S4 domain protein [Desmospora sp. 8437]
Length = 259
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V+ +L+ + R + + FL P + M +++ ++ GG+ AER R +
Sbjct: 19 VERVLDWTEQVERRSRPVLTPFLNPREQTITDMLVKRAPELGVTFDGGFFDAERKRARIF 78
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
P D + ++ L + P H D LGS+LG G+ RE IGD++
Sbjct: 79 PPWQEEGD-NGLSYLELESVDRSSPLKHPDVLGSLLGLGVKREVIGDLL 126
>gi|228954174|ref|ZP_04116202.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229071397|ref|ZP_04204619.1| RNA-binding S4 domain protein [Bacillus cereus F65185]
gi|229081150|ref|ZP_04213660.1| RNA-binding S4 domain protein [Bacillus cereus Rock4-2]
gi|229180173|ref|ZP_04307517.1| RNA-binding S4 domain protein [Bacillus cereus 172560W]
gi|449090839|ref|YP_007423280.1| hypothetical protein HD73_4181 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228603382|gb|EEK60859.1| RNA-binding S4 domain protein [Bacillus cereus 172560W]
gi|228702194|gb|EEL54670.1| RNA-binding S4 domain protein [Bacillus cereus Rock4-2]
gi|228711688|gb|EEL63641.1| RNA-binding S4 domain protein [Bacillus cereus F65185]
gi|228805494|gb|EEM52085.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|449024596|gb|AGE79759.1| hypothetical protein HD73_4181 [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 241
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+RA+ +V +DFL P + M + + DV G P AER R + +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI-YPDYLELN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 111
>gi|292669559|ref|ZP_06602985.1| S4 domain protein [Selenomonas noxia ATCC 43541]
gi|292648768|gb|EFF66740.1| S4 domain protein [Selenomonas noxia ATCC 43541]
Length = 264
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 73 GDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQA 132
G++ AI +L++A R+ S FL P + + ++ GGY A
Sbjct: 18 GEETAI----RLLDLAESVIKTRKFRISPFLDPYGQEIAETICANYEGIQLDFDGGYAGA 73
Query: 133 ERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
ER R + H + A T D + ++ N F SH D LG+++G GI RE IGDI+
Sbjct: 74 ERQRAMLRHADFAGTPDGFGIVCVAAAWNGQFARLSHRDVLGALMGLGIERESIGDIL 131
>gi|315639612|ref|ZP_07894752.1| S4 domain-containing protein YlmH [Enterococcus italicus DSM 15952]
gi|315484573|gb|EFU75029.1| S4 domain-containing protein YlmH [Enterococcus italicus DSM 15952]
Length = 260
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT---SDPDIVAALS 156
++FL P + + +D+K GGY QAER R + P+ T + DIV
Sbjct: 36 TEFLDPRQAYILETIVRQQSDLKFEFYGGYEQAERTRCLI-FPDYYTPTQEEFDIVL-FE 93
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
I F SHG LG+++ +G+ RE GDII
Sbjct: 94 INYPEKFTQLSHGKILGTLVNSGLKREYFGDII 126
>gi|228922650|ref|ZP_04085950.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837079|gb|EEM82420.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 241
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+RA+ +V +DFL P + M + + DV G P AER R + +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI-YPDYLELN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 111
>gi|325661583|ref|ZP_08150207.1| hypothetical protein HMPREF0490_00941 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331084857|ref|ZP_08333945.1| hypothetical protein HMPREF0987_00248 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325472110|gb|EGC75324.1| hypothetical protein HMPREF0490_00941 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330410951|gb|EGG90373.1| hypothetical protein HMPREF0987_00248 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 256
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ++E+++ A R + ++DFL L + GGY +ER +++
Sbjct: 10 KRLIELSKIAYHRNFITYTDFLNLNELNILHTLPKDTLYTPYRTFGGYASSER-QIAAFL 68
Query: 142 PEALTSDPDI---------VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
P+AL +I + L + F Q SH D+LG++L GI R KIGDII++
Sbjct: 69 PDALCLRSEIEDLAYPMGIIHILPRSQKFSEQ-LSHRDYLGALLSLGIERSKIGDIIVEE 127
Query: 193 KG---FLCSGCLQYT 204
+G F+ L Y
Sbjct: 128 QGAFVFVSDKLLSYV 142
>gi|430826927|ref|ZP_19445095.1| S4 domain-containing protein [Enterococcus faecium E0164]
gi|430444473|gb|ELA54311.1| S4 domain-containing protein [Enterococcus faecium E0164]
Length = 260
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 119 ADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSIL 176
+D++ + GGY QAER C + + E + D + A I F SHG LG+++
Sbjct: 55 SDLRFMFYGGYEQAERKRCLIFPDYYEPVKEDFE-TALYEIHYPSKFASLSHGKILGTLV 113
Query: 177 GTGIAREKIGDII 189
GTGI R GDII
Sbjct: 114 GTGIKRSYFGDII 126
>gi|418010737|ref|ZP_12650508.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
Lc-10]
gi|410553316|gb|EKQ27319.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
Lc-10]
Length = 259
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
+ H E+ A + + +DF P ++ S+++ + D+K V GGYPQAER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPQAERQRII 73
Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ + A +D DI L I F H G++L G+ R+ GDII
Sbjct: 74 FAPSYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDII 125
>gi|375362185|ref|YP_005130224.1| putative RNA-binding protein ylmH [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
gi|371568179|emb|CCF05029.1| putative RNA-binding protein ylmH [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
Length = 256
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSV 139
+ +LE + + + +DFL P +E ++ + D +A GGY +AER R ++
Sbjct: 16 IDQVLEWKQIVLDQYRMKLTDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AI 71
Query: 140 GHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+PE + + D + A + F H LGS++G G+ R+K GD+I +
Sbjct: 72 LYPEYMEPEQDDFELRAFDVQYAEKFVSIDHRSLLGSLMGVGLKRQKYGDLIFSEEA 128
>gi|206970953|ref|ZP_03231904.1| S4 domain protein [Bacillus cereus AH1134]
gi|218235237|ref|YP_002368697.1| S4 domain-containing protein [Bacillus cereus B4264]
gi|228960115|ref|ZP_04121779.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229047582|ref|ZP_04193172.1| RNA-binding S4 domain protein [Bacillus cereus AH676]
gi|229111367|ref|ZP_04240920.1| RNA-binding S4 domain protein [Bacillus cereus Rock1-15]
gi|229129175|ref|ZP_04258148.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-Cer4]
gi|229146469|ref|ZP_04274840.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST24]
gi|229152095|ref|ZP_04280290.1| RNA-binding S4 domain protein [Bacillus cereus m1550]
gi|206733725|gb|EDZ50896.1| S4 domain protein [Bacillus cereus AH1134]
gi|218163194|gb|ACK63186.1| S4 domain protein [Bacillus cereus B4264]
gi|228631444|gb|EEK88078.1| RNA-binding S4 domain protein [Bacillus cereus m1550]
gi|228637102|gb|EEK93561.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST24]
gi|228654412|gb|EEL10277.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-Cer4]
gi|228672143|gb|EEL27434.1| RNA-binding S4 domain protein [Bacillus cereus Rock1-15]
gi|228723829|gb|EEL75184.1| RNA-binding S4 domain protein [Bacillus cereus AH676]
gi|228799631|gb|EEM46584.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 241
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+RA+ +V +DFL P + M + + DV G P AER R + +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI-YPDYLELN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 111
>gi|384512698|ref|YP_005707791.1| S4 domain-containing protein YlmH [Enterococcus faecalis OG1RF]
gi|430361444|ref|ZP_19426664.1| S4 domain-containing protein [Enterococcus faecalis OG1X]
gi|430368036|ref|ZP_19428018.1| S4 domain-containing protein [Enterococcus faecalis M7]
gi|327534587|gb|AEA93421.1| S4 domain-containing protein YlmH [Enterococcus faecalis OG1RF]
gi|429512465|gb|ELA02071.1| S4 domain-containing protein [Enterococcus faecalis OG1X]
gi|429516541|gb|ELA06031.1| S4 domain-containing protein [Enterococcus faecalis M7]
Length = 260
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + +D+ GGY QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPVYYIPEETDFGVVLFEII 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG+++ G+ RE GDII
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDII 126
>gi|166031850|ref|ZP_02234679.1| hypothetical protein DORFOR_01551 [Dorea formicigenerans ATCC
27755]
gi|166028303|gb|EDR47060.1| S4 domain protein [Dorea formicigenerans ATCC 27755]
Length = 251
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ++E++ A SR V SDFL L + + GGY AER ++
Sbjct: 10 KRLIELSNLAFSRDIVTFSDFLNLNELNILHRTPKDQFKARFETYGGYELAER-QMVAFL 68
Query: 142 PEALTSDPDI-VAALSI---TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
P+AL D + AL I F + +H D+LG+I+ G +R KIGDII + G
Sbjct: 69 PDALYYDYGYPMQALKICPVNKRFA-EDLTHRDYLGAIMNLGTSRTKIGDIIQADDG 124
>gi|238927880|ref|ZP_04659640.1| ribosomal protein S4e [Selenomonas flueggei ATCC 43531]
gi|238884213|gb|EEQ47851.1| ribosomal protein S4e [Selenomonas flueggei ATCC 43531]
Length = 264
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGY AER R + H + D +A + N F +H D LG+++G GI RE I
Sbjct: 68 GGYQGAERARAMLRHRDFAGRTEDFGIACVEAAWNGQFARLTHRDVLGAVMGLGIEREMI 127
Query: 186 GDII 189
GDI+
Sbjct: 128 GDIL 131
>gi|229162833|ref|ZP_04290790.1| RNA-binding S4 domain protein [Bacillus cereus R309803]
gi|228620715|gb|EEK77584.1| RNA-binding S4 domain protein [Bacillus cereus R309803]
Length = 241
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+R + +V +DFL P + M + + DV G P AER R ++ +P+ L +
Sbjct: 8 KRTAEHHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFDGATPHAERKR-ALIYPDYLEVN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 111
>gi|423522271|ref|ZP_17498744.1| hypothetical protein IGC_01654 [Bacillus cereus HuA4-10]
gi|401176020|gb|EJQ83219.1| hypothetical protein IGC_01654 [Bacillus cereus HuA4-10]
Length = 255
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + DV G P+AER R ++
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNKEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQE 125
>gi|154483518|ref|ZP_02025966.1| hypothetical protein EUBVEN_01222 [Eubacterium ventriosum ATCC
27560]
gi|149735428|gb|EDM51314.1| S4 domain protein [Eubacterium ventriosum ATCC 27560]
Length = 251
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
++A + +R ++DFL + +L V GG AER R++V PE +
Sbjct: 14 DLANSSYNRNIYTYTDFLNLNEISILNSYKNQLPPVNVELAGGNDYAER-RIAVFSPEDI 72
Query: 146 TSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
D+ + I ++ SH D LG+IL GI R KIGDI L++
Sbjct: 73 YYTQDLPIKLIEIAPINSHYA-DKLSHRDVLGAILNLGIVRNKIGDIFLKD 122
>gi|75763514|ref|ZP_00743226.1| RNA binding protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|74488996|gb|EAO52500.1| RNA binding protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
Length = 255
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +R + +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSXGLTREKCGDILLQE 125
>gi|229061503|ref|ZP_04198847.1| RNA-binding S4 domain protein [Bacillus cereus AH603]
gi|229134707|ref|ZP_04263516.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST196]
gi|423367942|ref|ZP_17345374.1| hypothetical protein IC3_03043 [Bacillus cereus VD142]
gi|423489074|ref|ZP_17465756.1| hypothetical protein IEU_03697 [Bacillus cereus BtB2-4]
gi|423494799|ref|ZP_17471443.1| hypothetical protein IEW_03697 [Bacillus cereus CER057]
gi|423498409|ref|ZP_17475026.1| hypothetical protein IEY_01636 [Bacillus cereus CER074]
gi|423511932|ref|ZP_17488463.1| hypothetical protein IG3_03429 [Bacillus cereus HuA2-1]
gi|423518589|ref|ZP_17495070.1| hypothetical protein IG7_03659 [Bacillus cereus HuA2-4]
gi|423598791|ref|ZP_17574791.1| hypothetical protein III_01593 [Bacillus cereus VD078]
gi|423661263|ref|ZP_17636432.1| hypothetical protein IKM_01660 [Bacillus cereus VDM022]
gi|423669472|ref|ZP_17644501.1| hypothetical protein IKO_03169 [Bacillus cereus VDM034]
gi|423674349|ref|ZP_17649288.1| hypothetical protein IKS_01892 [Bacillus cereus VDM062]
gi|228648753|gb|EEL04779.1| RNA-binding S4 domain protein [Bacillus cereus BDRD-ST196]
gi|228717737|gb|EEL69387.1| RNA-binding S4 domain protein [Bacillus cereus AH603]
gi|401082803|gb|EJP91068.1| hypothetical protein IC3_03043 [Bacillus cereus VD142]
gi|401150892|gb|EJQ58344.1| hypothetical protein IEW_03697 [Bacillus cereus CER057]
gi|401160458|gb|EJQ67836.1| hypothetical protein IEY_01636 [Bacillus cereus CER074]
gi|401160797|gb|EJQ68172.1| hypothetical protein IG7_03659 [Bacillus cereus HuA2-4]
gi|401237061|gb|EJR43518.1| hypothetical protein III_01593 [Bacillus cereus VD078]
gi|401298599|gb|EJS04199.1| hypothetical protein IKO_03169 [Bacillus cereus VDM034]
gi|401301304|gb|EJS06893.1| hypothetical protein IKM_01660 [Bacillus cereus VDM022]
gi|401309900|gb|EJS15233.1| hypothetical protein IKS_01892 [Bacillus cereus VDM062]
gi|402432322|gb|EJV64381.1| hypothetical protein IEU_03697 [Bacillus cereus BtB2-4]
gi|402450193|gb|EJV82027.1| hypothetical protein IG3_03429 [Bacillus cereus HuA2-1]
Length = 255
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + DV G P+AER R ++
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQE 125
>gi|323691967|ref|ZP_08106216.1| hypothetical protein HMPREF9475_01079 [Clostridium symbiosum
WAL-14673]
gi|355628022|ref|ZP_09049551.1| hypothetical protein HMPREF1020_03630 [Clostridium sp. 7_3_54FAA]
gi|323503976|gb|EGB19789.1| hypothetical protein HMPREF9475_01079 [Clostridium symbiosum
WAL-14673]
gi|354819990|gb|EHF04421.1| hypothetical protein HMPREF1020_03630 [Clostridium sp. 7_3_54FAA]
Length = 251
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMM---ALEKLADVKAVAQGGYP 130
DK+ K I E+A R ++DFLT L E + L V + GGY
Sbjct: 3 DKDEQLLKKRISELAALCYQRDIRSYTDFLT---LNEQTIFHSMKRTLPPVTWLMGGGYE 59
Query: 131 QAER---CRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGD 187
AER C L E I+ A+ + F + +H DFLG+I+ GI+R IGD
Sbjct: 60 TAERKIVCFLPSYEDETADLPISILEAVPASPRFA-EALTHRDFLGAIMNLGISRSCIGD 118
Query: 188 IILQNKG 194
I++ G
Sbjct: 119 ILMNENG 125
>gi|339441072|ref|YP_004707077.1| hypothetical protein CXIVA_00080 [Clostridium sp. SY8519]
gi|338900473|dbj|BAK45975.1| hypothetical protein CXIVA_00080 [Clostridium sp. SY8519]
Length = 252
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K I ++A R+ + +DFLT E + ++LA V GG ER L G
Sbjct: 10 KRIRDLADRSCRENRYVFTDFLTLEEQSEVLNMKQELAYVDFALYGGTEACERKMLRFGS 69
Query: 142 PEALTSDPDI-VAALSIT---GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
L + + L I F P H DFLG+++ GI R+ +GDI ++ K
Sbjct: 70 EAQLGYSVEFPICCLRIEPRMKKFA-DPLIHRDFLGALMHLGIRRDVLGDIFVREK 124
>gi|421731791|ref|ZP_16170914.1| hypothetical protein WYY_11950 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|407074004|gb|EKE46994.1| hypothetical protein WYY_11950 [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 256
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSV 139
+ +LE + + + +DFL P +E ++ + D +A GGY +AER R ++
Sbjct: 16 IDQVLEWKQIVLDQYRMKLTDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AI 71
Query: 140 GHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+PE + + D + A + F H LGS++G G+ R+K GD+I +
Sbjct: 72 LYPEYMEPEQDDFELRAFDVQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIFSEEA 128
>gi|423385399|ref|ZP_17362655.1| hypothetical protein ICE_03145 [Bacillus cereus BAG1X1-2]
gi|401635455|gb|EJS53210.1| hypothetical protein ICE_03145 [Bacillus cereus BAG1X1-2]
Length = 255
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +R + +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|282882016|ref|ZP_06290657.1| RNA-binding S4 domain-containing protein [Peptoniphilus lacrimalis
315-B]
gi|281298046|gb|EFA90501.1| RNA-binding S4 domain-containing protein [Peptoniphilus lacrimalis
315-B]
Length = 258
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
Query: 61 VKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD 120
VK N ++LL + + + + ++K +L+ A SDFL P L + L L D
Sbjct: 2 VKLNKENLLNNINNSDDLYQLKKVLDKAFVVLKSYVDNSSDFLNPHELSLAKSILNSL-D 60
Query: 121 VKAVAQGGYPQAERCRLSVGHPEALTS-DPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
+ GGY E +++ +P L + + A+ G + H D LGS++G G
Sbjct: 61 IGYSFDGGYDDYEYGVVNM-YPSFLHGPKSESICAMKFPTIVGIK---HKDVLGSLIGLG 116
Query: 180 IAREKIGDIIL 190
I R KIGDI++
Sbjct: 117 IDRRKIGDILI 127
>gi|229006180|ref|ZP_04163866.1| RNA-binding S4 domain protein [Bacillus mycoides Rock1-4]
gi|228755021|gb|EEM04380.1| RNA-binding S4 domain protein [Bacillus mycoides Rock1-4]
Length = 246
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE + A +V +DFL P + + D G P+AER R ++
Sbjct: 4 VDKVLEWKQVAEEYHQVKLTDFLDPRQQQIVATIIGNQGDATLRLYGAEPKAERKR-ALI 62
Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P L ++ D V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 63 YPSYLDLNEEDFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQE 116
>gi|451347090|ref|YP_007445721.1| hypothetical protein KSO_011745 [Bacillus amyloliquefaciens IT-45]
gi|452855488|ref|YP_007497171.1| factor involved in shape determination,RNA-binding fold [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|449850848|gb|AGF27840.1| hypothetical protein KSO_011745 [Bacillus amyloliquefaciens IT-45]
gi|452079748|emb|CCP21505.1| factor involved in shape determination,RNA-binding fold [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 256
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSV 139
+ +LE + + + +DFL P +E ++ + D +A GGY +AER R ++
Sbjct: 16 IDQVLEWKQIVLDQYRMKLTDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AI 71
Query: 140 GHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+PE + + D + A + F H LGS++G G+ R+K GD+I +
Sbjct: 72 LYPEYMEPEQDDFELRAFDVQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIFSEEA 128
>gi|423528243|ref|ZP_17504688.1| hypothetical protein IGE_01795 [Bacillus cereus HuB1-1]
gi|402451906|gb|EJV83725.1| hypothetical protein IGE_01795 [Bacillus cereus HuB1-1]
Length = 255
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +R + +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|228998678|ref|ZP_04158265.1| RNA-binding S4 domain protein [Bacillus mycoides Rock3-17]
gi|228761146|gb|EEM10105.1| RNA-binding S4 domain protein [Bacillus mycoides Rock3-17]
Length = 257
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE + A +V +DFL P + + D G P+AER R ++
Sbjct: 15 VDKVLEWKQVAEEYHQVKLTDFLDPRQQQIVATIIGNQGDATLRLYGAEPKAERKR-ALI 73
Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P L ++ D V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 74 YPSYLDLNEEDFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQE 127
>gi|404371421|ref|ZP_10976726.1| hypothetical protein CSBG_01278 [Clostridium sp. 7_2_43FAA]
gi|226912451|gb|EEH97652.1| hypothetical protein CSBG_01278 [Clostridium sp. 7_2_43FAA]
Length = 256
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 23/139 (16%)
Query: 68 LLKGVGDKNAIEEVKHILEMARRASSRR-EVLHSDFLTPPVLK--ESMMALEKLADVKAV 124
+LK + +A E +K I E + A + V S F +P + E+ + +V
Sbjct: 7 ILKSFNEDDAKEAIK-IYEKYKLAYEKDITVFTSSFYSPNIWSFFENCCSNN---EVMFE 62
Query: 125 AQGGYPQAERCRL------SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGT 178
A G + ++ER + +V +P + L I F H D+LGSIL
Sbjct: 63 ANGFFEESERRMICFNNLYNVDYP---------IKILEIKNKSNFSNLKHKDYLGSILSL 113
Query: 179 GIAREKIGDIIL-QNKGFL 196
GI R K+GDII+ +NK +L
Sbjct: 114 GIERNKLGDIIVKENKAYL 132
>gi|218899051|ref|YP_002447462.1| S4 domain-containing protein [Bacillus cereus G9842]
gi|218545304|gb|ACK97698.1| S4 domain protein [Bacillus cereus G9842]
Length = 255
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +R + +V +DFL P + M + + DV G P AER R ++
Sbjct: 15 VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLKLNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|300814713|ref|ZP_07094963.1| S4 domain protein [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300511186|gb|EFK38436.1| S4 domain protein [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 258
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
Query: 61 VKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD 120
VK N ++LL + + + + ++K +L+ A SDFL P L + L L D
Sbjct: 2 VKLNKENLLNNINNSDDLYQLKKVLDKAFVVLKSYIDNSSDFLNPHELSLAKSILNSL-D 60
Query: 121 VKAVAQGGYPQAERCRLSVGHPEALTS-DPDIVAALSITGNFGFQPCSHGDFLGSILGTG 179
+ GGY E +++ +P L + + A+ G + H D LGS++G G
Sbjct: 61 IGYSFDGGYDDYEYGVVNM-YPSFLHGPKSESICAMKFPTIVGIK---HKDVLGSLIGLG 116
Query: 180 IAREKIGDIIL 190
I R KIGDI++
Sbjct: 117 IDRRKIGDILI 127
>gi|228902403|ref|ZP_04066557.1| RNA-binding S4 domain protein [Bacillus thuringiensis IBL 4222]
gi|228966851|ref|ZP_04127895.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar sotto
str. T04001]
gi|402564759|ref|YP_006607483.1| S4 domain-containing protein [Bacillus thuringiensis HD-771]
gi|423359066|ref|ZP_17336569.1| hypothetical protein IC1_01046 [Bacillus cereus VD022]
gi|423561697|ref|ZP_17537973.1| hypothetical protein II5_01101 [Bacillus cereus MSX-A1]
gi|434377001|ref|YP_006611645.1| S4 domain-containing protein [Bacillus thuringiensis HD-789]
gi|228792950|gb|EEM40508.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228857147|gb|EEN01653.1| RNA-binding S4 domain protein [Bacillus thuringiensis IBL 4222]
gi|401084938|gb|EJP93184.1| hypothetical protein IC1_01046 [Bacillus cereus VD022]
gi|401201954|gb|EJR08819.1| hypothetical protein II5_01101 [Bacillus cereus MSX-A1]
gi|401793411|gb|AFQ19450.1| S4 domain-containing protein [Bacillus thuringiensis HD-771]
gi|401875558|gb|AFQ27725.1| S4 domain-containing protein [Bacillus thuringiensis HD-789]
Length = 255
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +R + +V +DFL P + M + + DV G P AER R ++
Sbjct: 15 VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|423437350|ref|ZP_17414331.1| hypothetical protein IE9_03531 [Bacillus cereus BAG4X12-1]
gi|401120505|gb|EJQ28301.1| hypothetical protein IE9_03531 [Bacillus cereus BAG4X12-1]
Length = 255
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +R + +V +DFL P + M + + DV G P AER R +
Sbjct: 15 VDKVLEW-KRVAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|218133259|ref|ZP_03462063.1| hypothetical protein BACPEC_01124 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992132|gb|EEC58136.1| S4 domain protein [[Bacteroides] pectinophilus ATCC 43243]
Length = 251
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
D N + K E+AR++ ++ L +DFL+ P ++ +A + GG E
Sbjct: 2 DNNDQQLKKRFDELARKSYNQGIYLFTDFLSMP---DAAIACDSAPAGYVTLFGGTDGCE 58
Query: 134 RCRLSVGHPEALTSDPD----IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
R G+ E + D +V + F +H DFLG+++ GI R+ IGDI+
Sbjct: 59 RVMARFGNAEEFGYEEDFPIDVVMIEPLIKKFS-DELTHRDFLGALMNLGIERDVIGDIM 117
Query: 190 LQNK 193
+++K
Sbjct: 118 IRDK 121
>gi|228909724|ref|ZP_04073547.1| RNA-binding S4 domain protein [Bacillus thuringiensis IBL 200]
gi|228850013|gb|EEM94844.1| RNA-binding S4 domain protein [Bacillus thuringiensis IBL 200]
Length = 255
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE +R + +V +DFL P + M + + DV G P AER R ++
Sbjct: 15 VDKVLEW-KRTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVQFGGATPNAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|154504401|ref|ZP_02041139.1| hypothetical protein RUMGNA_01905 [Ruminococcus gnavus ATCC 29149]
gi|336432353|ref|ZP_08612188.1| hypothetical protein HMPREF0991_01307 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153795330|gb|EDN77750.1| S4 domain protein [Ruminococcus gnavus ATCC 29149]
gi|336018690|gb|EGN48427.1| hypothetical protein HMPREF0991_01307 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 262
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 17/124 (13%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLK-ESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
K + E++ A SR V +SDFL L M ++L K V GGY AER +++
Sbjct: 10 KRLSELSNLAYSRDIVTYSDFLNLNELNILHSMPKDRLY-TKFVTFGGYGLAER-QMAAF 67
Query: 141 HPEALTSDPDI-VAALSITGNFGF-------------QPCSHGDFLGSILGTGIAREKIG 186
P+AL+ ++ + G++ F + +H D+LG+ILG GI R KIG
Sbjct: 68 LPDALSLRGEMSWCSEEEWGDYPFDILRISPLHAKYAEQLTHRDYLGTILGLGIERAKIG 127
Query: 187 DIIL 190
DI++
Sbjct: 128 DILV 131
>gi|317129283|ref|YP_004095565.1| RNA-binding S4 domain-containing protein [Bacillus cellulosilyticus
DSM 2522]
gi|315474231|gb|ADU30834.1| RNA-binding S4 domain protein [Bacillus cellulosilyticus DSM 2522]
Length = 257
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAER--CR 136
V ++E A + +DFL P + +S++ + +V GGY +AER C
Sbjct: 15 VDQVMEWKETAIEQYRSKLTDFLDPRQQYIVQSLVG--QNDEVAVSFYGGYKEAERKRCL 72
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ + E +T D DI A + F H + LG+++ G+ REK GDI+
Sbjct: 73 IYPHYVEPVTEDYDI-ALYELLYPTKFVQIEHREILGALMNVGLKREKFGDIL 124
>gi|257877585|ref|ZP_05657238.1| S4 domain-containing protein [Enterococcus casseliflavus EC20]
gi|257811751|gb|EEV40571.1| S4 domain-containing protein [Enterococcus casseliflavus EC20]
Length = 260
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 100 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAAL 155
+DFL P + ES+ + + D+ GGY AER R + +P+ T+D +
Sbjct: 36 TDFLDPRQAYILESL--IRQSTDLSFRFFGGYEAAERRRCLI-YPDYYEPTTDEFDMTLF 92
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+I F SHG LG+++GTG+ RE GDI+
Sbjct: 93 TIQYPKKFTVLSHGKVLGTLMGTGVKREYFGDIL 126
>gi|163941637|ref|YP_001646521.1| RNA-binding S4 domain-containing protein [Bacillus
weihenstephanensis KBAB4]
gi|163863834|gb|ABY44893.1| RNA-binding S4 domain protein [Bacillus weihenstephanensis KBAB4]
Length = 255
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + DV G P+AER R ++
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVVVRFDGAMPEAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQE 125
>gi|257867506|ref|ZP_05647159.1| S4 domain-containing protein [Enterococcus casseliflavus EC30]
gi|257873835|ref|ZP_05653488.1| S4 domain-containing protein [Enterococcus casseliflavus EC10]
gi|257801562|gb|EEV30492.1| S4 domain-containing protein [Enterococcus casseliflavus EC30]
gi|257807999|gb|EEV36821.1| S4 domain-containing protein [Enterococcus casseliflavus EC10]
Length = 260
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 100 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAAL 155
+DFL P + ES+ + + D+ GGY AER R + +P+ T+D +
Sbjct: 36 TDFLDPRQAYILESL--IRQSTDLSFRFFGGYEAAERRRCLI-YPDYYEPTTDEFDMTLF 92
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+I F SHG LG+++GTG+ RE GDI+
Sbjct: 93 TIQYPKKFTVLSHGKVLGTLMGTGVKREYFGDIL 126
>gi|325571367|ref|ZP_08146867.1| S4 domain-containing protein YlmH [Enterococcus casseliflavus ATCC
12755]
gi|420262036|ref|ZP_14764679.1| S4 domain-containing protein YlmH [Enterococcus sp. C1]
gi|325155843|gb|EGC68039.1| S4 domain-containing protein YlmH [Enterococcus casseliflavus ATCC
12755]
gi|394771058|gb|EJF50842.1| S4 domain-containing protein YlmH [Enterococcus sp. C1]
Length = 260
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 100 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL--TSDPDIVAAL 155
+DFL P + ES+ + + D+ GGY AER R + +P+ T+D +
Sbjct: 36 TDFLDPRQAYILESL--IRQSTDLSFRFFGGYEAAERRRCLI-YPDYYEPTTDEFDMTLF 92
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+I F SHG LG+++GTG+ RE GDI+
Sbjct: 93 TIQYPKKFTVLSHGKVLGTLMGTGVKREYFGDIL 126
>gi|227499566|ref|ZP_03929673.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
gi|227218325|gb|EEI83579.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
Length = 255
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 69 LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGG 128
L + DK+ +K + + RA R L S FL P +E + ++ K ++ GG
Sbjct: 7 LNFIKDKSKKSTIKKAISILERAFYSRNELSSFFL-DPYEREVIESIAKKNNIDLTFIGG 65
Query: 129 YPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
+ +AER + + D + LS F + H D LG+++ G+ RE IGDI
Sbjct: 66 HSEAERKIFVANYYYLPLNLHDYIEILS----FNCKDIKHPDVLGALISLGLDRESIGDI 121
>gi|229157476|ref|ZP_04285553.1| RNA-binding S4 domain protein [Bacillus cereus ATCC 4342]
gi|228625926|gb|EEK82676.1| RNA-binding S4 domain protein [Bacillus cereus ATCC 4342]
Length = 241
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
+RA+ +V +DFL P + M + + +V G QAER R ++ +P+ L +
Sbjct: 8 KRAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GEVAVQFDGATSQAERKR-ALIYPDYLVVN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 111
>gi|291538949|emb|CBL12060.1| Uncharacterized conserved protein, contains S4-like domain
[Roseburia intestinalis XB6B4]
Length = 250
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K +L+++R+A + VL SDFL L + A K + GG AER ++
Sbjct: 9 KRLLDLSRQADRKGIVLFSDFLNLNELNIYHQCESEFA-TKTESFGGVSYAER-QIIAFI 66
Query: 142 PEALTSDPDI-VAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIIL 190
P+AL + +AAL + + + H D LGS++ GI R KIGDI++
Sbjct: 67 PDALYYEWTYPIAALKVEPAYPKYAEKLGHRDLLGSVMTLGIDRSKIGDILM 118
>gi|228992632|ref|ZP_04152558.1| RNA-binding S4 domain protein [Bacillus pseudomycoides DSM 12442]
gi|228766964|gb|EEM15601.1| RNA-binding S4 domain protein [Bacillus pseudomycoides DSM 12442]
Length = 257
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE + A +V +DFL P + + D G P+AER R ++
Sbjct: 15 VDKVLEWKQVAEEYHQVKLTDFLDPRQQQIVATIVGNQGDATLRLYGAEPKAERKR-ALI 73
Query: 141 HPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P L ++ D V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 74 YPSYLDLNEEDFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQE 127
>gi|417998984|ref|ZP_12639197.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
T71499]
gi|410539924|gb|EKQ14446.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
T71499]
Length = 259
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
+ H E+ A + + +DF P ++ S+++ + D+K V GGYP AER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRII 73
Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ G+ A D DI L I F H G++L G+ R+ GDII
Sbjct: 74 FAPGYFSATAVDFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDII 125
>gi|291542659|emb|CBL15769.1| Uncharacterized conserved protein, contains S4-like domain
[Ruminococcus bromii L2-63]
Length = 255
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 10/70 (14%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITG-NFGFQPC---SHGDFLGSILGTGIAR 182
GGY +ER L + E TS I G F F+ C +H DFLGS++ GI R
Sbjct: 63 GGYDDSERKMLGLFFDEPSTS------MFPICGIEFSFRKCDRLTHRDFLGSLMSLGIER 116
Query: 183 EKIGDIILQN 192
E +GDI++++
Sbjct: 117 ETVGDILVED 126
>gi|377831350|ref|ZP_09814327.1| S4 domain protein [Lactobacillus mucosae LM1]
gi|377554777|gb|EHT16479.1| S4 domain protein [Lactobacillus mucosae LM1]
Length = 262
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
I +V+ L MA A R +L +DFL P + + + DVK A GG+ AE R+
Sbjct: 19 IAQVEDWLNMA--ADQYRPIL-TDFLNPRQVYIAQTLTNRRDDVKMRANGGWEHAEMQRV 75
Query: 138 SV--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGF 195
+ E +D ++ + I F H LG+++GTG+ R GD++ N+G
Sbjct: 76 LFYPSYYEPQQTDFEL-QLIEIDYPTKFTELHHRQILGTLIGTGLVRSSFGDVL--NEGM 132
Query: 196 LCSGCLQYTL 205
+ +L
Sbjct: 133 RWQVVVSRSL 142
>gi|258646841|ref|ZP_05734310.1| S4 domain protein [Dialister invisus DSM 15470]
gi|260404278|gb|EEW97825.1| S4 domain protein [Dialister invisus DSM 15470]
Length = 263
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF 161
F++P + + V GGY +AER R++ + + AL +T +
Sbjct: 43 FMSPFAAQVGQTIAAHMKTVAVKTSGGYHEAERIRVAFARNDYDGLVDFGLTALKVTWDD 102
Query: 162 GFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
++ H D LG+++G GI R +GDI++Q G
Sbjct: 103 RYRLIGHRDVLGALMGLGIDRAVLGDILMQGAG 135
>gi|257870264|ref|ZP_05649917.1| S4 domain-containing protein [Enterococcus gallinarum EG2]
gi|357050529|ref|ZP_09111727.1| hypothetical protein HMPREF9478_01710 [Enterococcus saccharolyticus
30_1]
gi|257804428|gb|EEV33250.1| S4 domain-containing protein [Enterococcus gallinarum EG2]
gi|355381182|gb|EHG28309.1| hypothetical protein HMPREF9478_01710 [Enterococcus saccharolyticus
30_1]
Length = 260
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 100 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAAL 155
+DFL P + ES+ + + D+ GGY AER C + + + + + D+V
Sbjct: 36 TDFLDPRQAYILESL--IRQSTDLSFQFFGGYEAAERRRCLIYPDYYQPASEEFDLVL-F 92
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+I F SHG LG+++GTG+ RE GDII
Sbjct: 93 TIIYPKKFTVLSHGKVLGTLMGTGVKREYFGDII 126
>gi|312135163|ref|YP_004002501.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
owensensis OL]
gi|311775214|gb|ADQ04701.1| RNA-binding S4 domain protein [Caldicellulosiruptor owensensis OL]
Length = 260
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESM-MALEKLADVKAVAQGGYPQA 132
+K+ I +VK+++E R + +SDFL+P +K ++ L+K + GGY +
Sbjct: 13 NKHEILKVKNLIEKIRWG-----IEYSDFLSPFAIKYAVDFLLKKENQILYKIWGGYEGS 67
Query: 133 ERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
ER L++ + ++ + H LGS +G GI R+KIGDI+++
Sbjct: 68 ERNILALFSRDFEEYAENLTYPIKTILIEAKDKLFHRQVLGSFIGNGIKRDKIGDILVKE 127
Query: 193 KGFLC 197
L
Sbjct: 128 NSALV 132
>gi|240146312|ref|ZP_04744913.1| putative S4 domain protein [Roseburia intestinalis L1-82]
gi|257201553|gb|EEU99837.1| putative S4 domain protein [Roseburia intestinalis L1-82]
Length = 250
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K +L+++R+A + VL SDFL L + A K + GG AER ++
Sbjct: 9 KRLLDLSRQADRKGIVLFSDFLNLNELNIYHQCESEFA-TKTESFGGVSYAER-QIIAFI 66
Query: 142 PEALTSDPDI-VAALSITGNF-GF-QPCSHGDFLGSILGTGIAREKIGDIIL 190
P+AL + +AAL + + F + H D LGS++ GI R KIGDI++
Sbjct: 67 PDALYYEWTYPIAALKVEPAYPKFAEKLGHRDLLGSVMTLGIDRSKIGDILM 118
>gi|294784591|ref|ZP_06749880.1| RNA binding protein [Fusobacterium sp. 3_1_27]
gi|294487807|gb|EFG35166.1| RNA binding protein [Fusobacterium sp. 3_1_27]
Length = 241
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++A + + V++S+ P S + K + +K +G E+ L
Sbjct: 5 LEKIENYIKLAEKTDT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57
Query: 138 SVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
+V +PE T D P V I F H +LG+ILG GI RE +GD+I++N
Sbjct: 58 AV-YPEYFTEDYLYFP--VKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKNN 114
Query: 194 GFLCSGCL 201
C G +
Sbjct: 115 E--CYGII 120
>gi|420155653|ref|ZP_14662511.1| hypothetical protein HMPREF1141_2201 [Clostridium sp. MSTE9]
gi|394758882|gb|EJF41718.1| hypothetical protein HMPREF1141_2201 [Clostridium sp. MSTE9]
Length = 253
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 76 NAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERC 135
NAI E + +L+ R S R + + FL+ + L + + GG+ AER
Sbjct: 9 NAILEAR-LLDAVRLCSRRSQPVFVGFLSEAEAFSAQGVLRREGFFHYLFWGGFEGAERV 67
Query: 136 RLSVGHPEALTSDPDIVAALSITGNFGFQPC---SHGDFLGSILGTGIAREKIGDIILQ 191
P+ L +P+ ++T F+ C +H DFLG+++ GI R+ +GD++++
Sbjct: 68 MFGA-FPDYLEPEPESFPICAVTA--AFRDCDKLTHRDFLGALMALGITRDTVGDLLIE 123
>gi|423592106|ref|ZP_17568137.1| hypothetical protein IIG_00974 [Bacillus cereus VD048]
gi|401232239|gb|EJR38741.1| hypothetical protein IIG_00974 [Bacillus cereus VD048]
Length = 255
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + DV G P+AER R ++
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFGGAMPEAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQE 125
>gi|295398667|ref|ZP_06808691.1| S4 domain-containing protein YlmH [Aerococcus viridans ATCC 11563]
gi|294973102|gb|EFG48905.1| S4 domain-containing protein YlmH [Aerococcus viridans ATCC 11563]
Length = 263
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQAE--RCRLSVGHPEALTSDPDIVAALSITG 159
FL P + M + + ++ GGYP AE RC L+ + E +D +I I
Sbjct: 39 FLNPREVAIVSMIIGQDDEIHYEFFGGYPNAENQRCVLAPTYYEIQPADFEI-TPFDIHY 97
Query: 160 NFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F H LG+ILG G+ R +IGDII
Sbjct: 98 ASKFNTIEHRQILGTILGQGVERNRIGDII 127
>gi|418004991|ref|ZP_12644992.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
UW1]
gi|410548119|gb|EKQ22335.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
UW1]
Length = 259
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRL 137
+ H E+ A + + +DF P ++ ++A+ ++ D+K V GGYP AER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDP---RQRLIAISLVSADDDIKLVHFGGYPHAERQRI 72
Query: 138 --SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ + A +D DI L I F H G++L G+ R+ GDII
Sbjct: 73 IFAPSYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDII 125
>gi|423470111|ref|ZP_17446855.1| hypothetical protein IEM_01417 [Bacillus cereus BAG6O-2]
gi|423558540|ref|ZP_17534842.1| hypothetical protein II3_03744 [Bacillus cereus MC67]
gi|401191808|gb|EJQ98830.1| hypothetical protein II3_03744 [Bacillus cereus MC67]
gi|402437363|gb|EJV69387.1| hypothetical protein IEM_01417 [Bacillus cereus BAG6O-2]
Length = 255
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V ++E ++A+ +V +DFL P + M + + DV G P+AER R ++
Sbjct: 15 VDKVIEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQE 125
>gi|373115649|ref|ZP_09529818.1| hypothetical protein HMPREF0995_00654 [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670171|gb|EHO35257.1| hypothetical protein HMPREF0995_00654 [Lachnospiraceae bacterium
7_1_58FAA]
Length = 266
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 65 FDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADV--- 121
+ L + G++ + LE+AR+ R +DFL+P + +++E L +
Sbjct: 7 LNKLARDNGERLLLARALDKLELARQ---RNIPACTDFLSP----QERVSVENLLNACGH 59
Query: 122 -KAVAQGGYPQAER--CRLSVGHPEALTSDPD----IVAALSITGNFGFQPCSHGDFLGS 174
+ + GGY AER C EA D V AL T + G Q +H DFLGS
Sbjct: 60 PRHLFFGGYEGAERTVCAFLPDWQEAEDWQGDGESCPVRALRCTWSGG-QKLTHRDFLGS 118
Query: 175 ILGTGIAREKIGDIILQN 192
+LG G+ REK+GD+++ +
Sbjct: 119 VLGLGLDREKVGDLLVAD 136
>gi|357058626|ref|ZP_09119474.1| hypothetical protein HMPREF9334_01191 [Selenomonas infelix ATCC
43532]
gi|355373582|gb|EHG20898.1| hypothetical protein HMPREF9334_01191 [Selenomonas infelix ATCC
43532]
Length = 264
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 127 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGY AER R + H + A T D +A + N F +H D LG+++G GI RE +
Sbjct: 68 GGYAGAERQRAMLCHRDFAGTPDGFAIACVEAAWNGQFARLTHRDVLGAVMGLGIERELV 127
Query: 186 GDII 189
GDI+
Sbjct: 128 GDIL 131
>gi|401565106|ref|ZP_10805961.1| S4 domain protein [Selenomonas sp. FOBRC6]
gi|400188139|gb|EJO22313.1| S4 domain protein [Selenomonas sp. FOBRC6]
Length = 264
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY AER R + H + PD +A + + N F +H D LG+++G GI RE
Sbjct: 68 GGYTGAERQRAMLRHQD-FRGTPDGFAIACVEASWNGQFARLTHRDVLGAVMGLGIEREL 126
Query: 185 IGDII 189
IGDI+
Sbjct: 127 IGDIL 131
>gi|167758166|ref|ZP_02430293.1| hypothetical protein CLOSCI_00504 [Clostridium scindens ATCC 35704]
gi|167664063|gb|EDS08193.1| S4 domain protein [Clostridium scindens ATCC 35704]
Length = 251
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K + E++R A +R V S+FL L + + + GGY +ER +++
Sbjct: 10 KRLAELSRIAYTREIVTFSEFLNLNELNILHTTPKDMLLSQYKTYGGYGLSER-QMAAFL 68
Query: 142 PEALTSD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
P+AL D P + +S + SH D+LG+++ GI R K+GDI++++
Sbjct: 69 PDALYYDYQYPIQIIEISPVNRKFAEELSHRDYLGAVMNLGIERCKLGDILIED 122
>gi|334127576|ref|ZP_08501488.1| S4 domain protein [Centipeda periodontii DSM 2778]
gi|333389530|gb|EGK60695.1| S4 domain protein [Centipeda periodontii DSM 2778]
Length = 264
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 126 QGGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY AER R + H + A T D +A + N F +H D LG+++G GI RE
Sbjct: 67 NGGYAGAERQRAMLRHRDFAGTPDGFGIACVEAAWNGQFARLTHRDVLGAVMGLGIEREL 126
Query: 185 IGDII 189
IGDI+
Sbjct: 127 IGDIL 131
>gi|304440209|ref|ZP_07400099.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371258|gb|EFM24874.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 249
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 21/128 (16%)
Query: 69 LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTP-------PVLKESMMALEKLADV 121
L + D + E++K +E A + +DFL P P++ ++ E
Sbjct: 4 LDFIQDNSLKEKLKQTIEKIEIADKSNRSIDTDFLDPYERSIIRPIIGHNLEYYE----- 58
Query: 122 KAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 181
GGY +AER + + P ++ LSI SH + LGS+LG G+
Sbjct: 59 ----DGGYDEAERKIIQIYPPYIERTEK-----LSIIKIISKNKISHREILGSVLGLGLV 109
Query: 182 REKIGDII 189
REKIGDI+
Sbjct: 110 REKIGDIV 117
>gi|229013082|ref|ZP_04170247.1| RNA-binding S4 domain protein [Bacillus mycoides DSM 2048]
gi|228748336|gb|EEL98196.1| RNA-binding S4 domain protein [Bacillus mycoides DSM 2048]
Length = 241
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
++A+ +V +DFL P + M + + DV G P+AER R + +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKRALI-YPDYLELN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 66 EEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQE 111
>gi|237743523|ref|ZP_04574004.1| RNA binding protein [Fusobacterium sp. 7_1]
gi|229433302|gb|EEO43514.1| RNA binding protein [Fusobacterium sp. 7_1]
Length = 241
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++A +A + V++S+ P S + K + +K +G E+ L
Sbjct: 5 LEKIENYIKLAEKADT---VIYSNQFFPV----SQLNNLKYSGMKFYFKGLNEDCEKKLL 57
Query: 138 SVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+V +PE + D V I F H +LG+ILG GI RE +GD+I++N
Sbjct: 58 AV-YPEYFSEDYLYFPVKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKN 113
>gi|157692221|ref|YP_001486683.1| hypothetical protein BPUM_1440 [Bacillus pumilus SAFR-032]
gi|157680979|gb|ABV62123.1| hypothetical protein BPUM_1440 [Bacillus pumilus SAFR-032]
Length = 258
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +L + A + + +DFL P + ++ ++ + GGY AER R +
Sbjct: 16 VDQVLGWKKIALDQYRLKLTDFLDPREQFITQSVIQHADELGIMFFGGYEGAERKRALI- 74
Query: 141 HPEAL---TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL--QNKGF 195
+PE L T D ++ + + F H LGS++GTG+ R+K GD++ ++ F
Sbjct: 75 YPEYLEPATQDAEL-SYFQVNYAKKFISLEHPKLLGSLIGTGLKRQKFGDLLFSEEDVQF 133
Query: 196 LCS 198
+C+
Sbjct: 134 ICT 136
>gi|194014420|ref|ZP_03053037.1| RNA-binding protein [Bacillus pumilus ATCC 7061]
gi|194013446|gb|EDW23011.1| RNA-binding protein [Bacillus pumilus ATCC 7061]
Length = 258
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +L + A + + +DFL P + ++ ++ + GGY AER R +
Sbjct: 16 VDQVLGWKKIALDQYRLKLTDFLDPREQFITQSVIQHADELGIMFFGGYEGAERKRALI- 74
Query: 141 HPEAL---TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL--QNKGF 195
+PE L T D ++ + + F H LGS++GTG+ R+K GD++ ++ F
Sbjct: 75 YPEYLQPATQDAEL-SYFQVNYAKKFISLEHPKLLGSLIGTGLKRQKFGDLLFSEEDVQF 133
Query: 196 LCS 198
+C+
Sbjct: 134 ICT 136
>gi|148242945|ref|YP_001228102.1| hypothetical protein SynRCC307_1846 [Synechococcus sp. RCC307]
gi|147851255|emb|CAK28749.1| Conserved hypothetical protein, contains S4-like domain
[Synechococcus sp. RCC307]
Length = 261
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DLL+G D A+E + E+ R + S FLT P +E+ L ++ +
Sbjct: 6 DLLEGARDPQALEALIQQAEVVLRTY---QPSWSAFLTGPQREEAEERFAPLGELHLRSA 62
Query: 127 GGYPQAERCRLSVGHPE--ALTSDPDIVAALSITGNFGFQPC 166
GG+PQAER L + + A +P +A + ++GNF F P
Sbjct: 63 GGFPQAERRLLQISRSDQAADAGEPAPLALVEVSGNFLFDPA 104
>gi|302871852|ref|YP_003840488.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
obsidiansis OB47]
gi|302574711|gb|ADL42502.1| RNA-binding S4 domain protein [Caldicellulosiruptor obsidiansis
OB47]
Length = 255
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESM-MALEKLADVKAVAQGGYPQA 132
+K+ I ++K+++E R + +SDFL+P +K ++ L+K + GGY +
Sbjct: 8 NKHEILKIKNLIEKTRFG-----IEYSDFLSPFAIKYAVDFLLKKENQILYKIWGGYEGS 62
Query: 133 ERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
ER L++ + ++ + H LGS +G GI R+KIGDI+++
Sbjct: 63 ERNILALFSRDFEEYAENLTYPIETILIEAKDKLFHRQVLGSFIGNGIKRDKIGDILVKE 122
Query: 193 KGFLC 197
L
Sbjct: 123 NSALV 127
>gi|385264665|ref|ZP_10042752.1| S4 domain-containing protein [Bacillus sp. 5B6]
gi|385149161|gb|EIF13098.1| S4 domain-containing protein [Bacillus sp. 5B6]
Length = 256
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSVGHPEALTSDPDI--VAALS 156
+DFL P +E ++ + D +A GGY +AER R ++ +PE + + D + A
Sbjct: 35 TDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AILYPEYMEPEQDDFELRAFD 90
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ F H LGS++G G+ R+K GD+I +
Sbjct: 91 VQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIFSEEA 128
>gi|422940293|ref|ZP_16967632.1| RNA binding protein [Fusobacterium nucleatum subsp. animalis ATCC
51191]
gi|339890036|gb|EGQ79226.1| RNA binding protein [Fusobacterium nucleatum subsp. animalis ATCC
51191]
Length = 241
Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 16/128 (12%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++A +A + V++S+ P S + K + +K +G E+ L
Sbjct: 5 LEKIENYIKLAEKADT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57
Query: 138 SVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
+V +PE + D P V I F H +LG+ILG GI RE +GD+I++N
Sbjct: 58 AV-YPEYFSEDYLYFP--VKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKND 114
Query: 194 GFLCSGCL 201
C G +
Sbjct: 115 E--CYGII 120
>gi|154685957|ref|YP_001421118.1| hypothetical protein RBAM_015240 [Bacillus amyloliquefaciens FZB42]
gi|384265122|ref|YP_005420829.1| putative RNA-binding protein ylmH [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387898117|ref|YP_006328413.1| hypothetical protein MUS_1688 [Bacillus amyloliquefaciens Y2]
gi|394993877|ref|ZP_10386616.1| YlmH [Bacillus sp. 916]
gi|429505092|ref|YP_007186276.1| hypothetical protein B938_07910 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|154351808|gb|ABS73887.1| YlmH [Bacillus amyloliquefaciens FZB42]
gi|380498475|emb|CCG49513.1| putative RNA-binding protein ylmH [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387172227|gb|AFJ61688.1| conserved hypothetical protein YlmH [Bacillus amyloliquefaciens Y2]
gi|393805201|gb|EJD66581.1| YlmH [Bacillus sp. 916]
gi|429486682|gb|AFZ90606.1| hypothetical protein B938_07910 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 256
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQ-GGYPQAERCRLSVGHPEALTSDPDI--VAALS 156
+DFL P +E ++ + D +A GGY +AER R ++ +PE + + D + A
Sbjct: 35 TDFLDP---REQVIVKAVIGDACGLAFFGGYDRAERKR-AILYPEYMEPEQDDFELRAFD 90
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ F H LGS++G G+ R+K GD+I +
Sbjct: 91 VQYAEKFVSIDHRSLLGSLMGIGLKRQKYGDLIFSEEA 128
>gi|422699560|ref|ZP_16757424.1| S4 domain protein [Enterococcus faecalis TX1342]
gi|315171938|gb|EFU15955.1| S4 domain protein [Enterococcus faecalis TX1342]
Length = 260
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + +D+ GGY QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGGYEQAERKRCLIYPAYYIPEETDFGVVLFEII 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG+++ G+ RE G+II
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGNII 126
>gi|443632790|ref|ZP_21116969.1| S4 domain-containing protein [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443347613|gb|ELS61671.1| S4 domain-containing protein [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 257
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 100 SDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLSVGHPEAL---TSDPDIVAA 154
+DFL P +E ++ A+ ADV GGY +AER R ++ +PE + SD ++ A
Sbjct: 35 TDFLDP---REQVILSAVTGQADVGLAFSGGYGRAERKR-AILYPEYIIPEESDFEL-QA 89
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
++ F H LG+++G G+ R+K GDI+
Sbjct: 90 FNVRYAEKFVTVDHRSLLGALMGIGLRRQKFGDIVF 125
>gi|352516938|ref|YP_004886255.1| hypothetical protein TEH_07640 [Tetragenococcus halophilus NBRC
12172]
gi|348601045|dbj|BAK94091.1| hypothetical protein TEH_07640 [Tetragenococcus halophilus NBRC
12172]
Length = 260
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 100 SDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAAL 155
++FL P + E+++ E +++K GGY +AER R + + E D +I
Sbjct: 36 TEFLDPRQAFILETLVRQE--SELKFRFFGGYEEAERSRCLIFPNYYEPSQEDFEI-DLF 92
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
++ F SHG LGS++GTGI RE +GDII
Sbjct: 93 NVHYPKKFTVLSHGKILGSLVGTGIRREFLGDII 126
>gi|365851170|ref|ZP_09391611.1| S4 domain protein [Lactobacillus parafarraginis F0439]
gi|363717369|gb|EHM00747.1| S4 domain protein [Lactobacillus parafarraginis F0439]
Length = 249
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREK 184
GGY AE R ++ +PE T + S ++ F SHG LGSI+G GI R+
Sbjct: 50 GGYEGAELKR-AIVYPEYFTPKNEDFHITSFVIDYPSKFATLSHGQVLGSIMGAGIERDV 108
Query: 185 IGDIILQ--NKGFLC 197
IGDII + FLC
Sbjct: 109 IGDIITDGLSWQFLC 123
>gi|389573338|ref|ZP_10163413.1| hypothetical protein BAME_19820 [Bacillus sp. M 2-6]
gi|388427035|gb|EIL84845.1| hypothetical protein BAME_19820 [Bacillus sp. M 2-6]
Length = 258
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 159
+DFL P + ++ ++ + GGY +AER R ++ +P+ L
Sbjct: 35 TDFLDPREQFITQSVIQHSDELGLMFFGGYEEAERKR-ALIYPDYLAPSIQDFELTYFQV 93
Query: 160 NFG--FQPCSHGDFLGSILGTGIAREKIGDIIL--QNKGFLCSG 199
N+ F H + LGS++GTG+ R+K GD++ N F+C+
Sbjct: 94 NYAKKFISIEHPNLLGSLIGTGLKRQKFGDLLFSEDNVQFICTS 137
>gi|289765067|ref|ZP_06524445.1| RNA binding protein [Fusobacterium sp. D11]
gi|336401695|ref|ZP_08582457.1| hypothetical protein HMPREF0404_01748 [Fusobacterium sp. 21_1A]
gi|336419702|ref|ZP_08599957.1| RNA binding protein [Fusobacterium sp. 11_3_2]
gi|423137340|ref|ZP_17124983.1| hypothetical protein HMPREF9942_01121 [Fusobacterium nucleatum
subsp. animalis F0419]
gi|289716622|gb|EFD80634.1| RNA binding protein [Fusobacterium sp. D11]
gi|336160796|gb|EGN63828.1| hypothetical protein HMPREF0404_01748 [Fusobacterium sp. 21_1A]
gi|336163022|gb|EGN65964.1| RNA binding protein [Fusobacterium sp. 11_3_2]
gi|371960273|gb|EHO77933.1| hypothetical protein HMPREF9942_01121 [Fusobacterium nucleatum
subsp. animalis F0419]
Length = 241
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++A +A + V++S+ P S + K + +K +G E+ L
Sbjct: 5 LEKIENYIKLAEKADT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57
Query: 138 SVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGF 195
+V +PE + D V I F H +LG+ILG GI RE +GD+I++N
Sbjct: 58 AV-YPEYFSEDYLYFPVKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKNDE- 115
Query: 196 LCSGCL 201
C G +
Sbjct: 116 -CYGII 120
>gi|191638281|ref|YP_001987447.1| RNA-binding protein [Lactobacillus casei BL23]
gi|385819986|ref|YP_005856373.1| Photosystem II S4 domain-containing protein [Lactobacillus casei
LC2W]
gi|385823181|ref|YP_005859523.1| Photosystem II S4 domain-containing protein [Lactobacillus casei
BD-II]
gi|409997144|ref|YP_006751545.1| RNA-binding protein ylmH [Lactobacillus casei W56]
gi|190712583|emb|CAQ66589.1| YlmH (RNA-binding protein) [Lactobacillus casei BL23]
gi|327382313|gb|AEA53789.1| Photosystem II S4 domain-containing protein [Lactobacillus casei
LC2W]
gi|327385508|gb|AEA56982.1| Photosystem II S4 domain-containing protein [Lactobacillus casei
BD-II]
gi|406358156|emb|CCK22426.1| Putative RNA-binding protein ylmH [Lactobacillus casei W56]
Length = 259
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
+ H E+ A + + +DF P ++ S+++ + D+K V GGYP+AER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPRAERQRII 73
Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ + A +D DI L I F H G++L G+ R+ GDII
Sbjct: 74 FAPNYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDII 125
>gi|283797929|ref|ZP_06347082.1| putative S4 domain protein [Clostridium sp. M62/1]
gi|291074397|gb|EFE11761.1| S4 domain protein [Clostridium sp. M62/1]
Length = 251
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEK-LADVKAVAQGGYPQAER---C 135
K I+E+A R ++DFL L E + ++E+ L V+ + GGY AER C
Sbjct: 10 KRIMELAALCYQRDIPSYTDFLN---LNEQTVFHSIERSLPPVRYLMTGGYEPAERKIVC 66
Query: 136 RLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
L +A I+ + F + +H D+LG+++ GI R +GDI++ G
Sbjct: 67 FLPSYEEDATNLPISILKVEPVNARFA-EGLTHRDYLGALMNLGIERGMVGDIVINEDG 124
>gi|187779880|ref|ZP_02996353.1| hypothetical protein CLOSPO_03476 [Clostridium sporogenes ATCC
15579]
gi|187773505|gb|EDU37307.1| hypothetical protein CLOSPO_03476 [Clostridium sporogenes ATCC
15579]
Length = 256
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 74 DKNAIEEVKHILEMARRA----SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGY 129
+K IE+ +L++ +A + +++ S F T + K S L + ++K G +
Sbjct: 8 NKVNIEDKSLLLDIYNKAILAEKTGKQLFSSYFCTNNICKVSC-ELAQFLNLKIDIFGVF 66
Query: 130 PQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
AER +G T D IV + I N F H DFLG++ GI REK+GD++
Sbjct: 67 KDAER--QIIGFNVYDTEDFPIVL-VKINYNSKFVNLEHKDFLGALTSLGIKREKMGDLV 123
Query: 190 LQ 191
L+
Sbjct: 124 LK 125
>gi|258539498|ref|YP_003173997.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
Lc 705]
gi|257151174|emb|CAR90146.1| RNA-binding S4 domain protein [Lactobacillus rhamnosus Lc 705]
Length = 259
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ H E+ A + + +DF P + + D+K V GGYP AER RL +
Sbjct: 16 IDHFAELIETARTEYRAVLTDFTDPRQRLIAASLINAHDDMKLVHFGGYPHAERQRL-IF 74
Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGF 195
P+ + P D + L + F H G++L G+ R+ GDI+ + +
Sbjct: 75 APDYFAAQPADFDIRLLQVVYPEKFAEMHHSTIQGTLLNAGLDRDVFGDIVTDGRTW 131
>gi|300859623|ref|ZP_07105711.1| S4 domain protein [Enterococcus faecalis TUSoD Ef11]
gi|422730879|ref|ZP_16787260.1| S4 domain protein [Enterococcus faecalis TX0645]
gi|428766509|ref|YP_007152620.1| S4 domain protein [Enterococcus faecalis str. Symbioflor 1]
gi|300850441|gb|EFK78190.1| S4 domain protein [Enterococcus faecalis TUSoD Ef11]
gi|315162934|gb|EFU06951.1| S4 domain protein [Enterococcus faecalis TX0645]
gi|427184682|emb|CCO71906.1| S4 domain protein [Enterococcus faecalis str. Symbioflor 1]
Length = 260
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + +D+ G Y QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGSYEQAERKRCLIYPAYYMPEETDFGVVLFEII 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG+++ G+ RE GDII
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDII 126
>gi|258508284|ref|YP_003171035.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
GG]
gi|385827956|ref|YP_005865728.1| cell division protein [Lactobacillus rhamnosus GG]
gi|257148211|emb|CAR87184.1| RNA-binding S4 domain protein [Lactobacillus rhamnosus GG]
gi|259649601|dbj|BAI41763.1| cell division protein [Lactobacillus rhamnosus GG]
Length = 259
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ H E+ A + + +DF P + + D+K V GGYP AER RL +
Sbjct: 16 IDHFAELIETARTEYRAVLTDFTDPRQRLIAASLINAHDDMKLVHFGGYPHAERQRL-IF 74
Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGF 195
P+ + P D + L + F H G++L G+ R+ GDI+ + +
Sbjct: 75 APDYFAAQPADFDIRLLQVVYPEKFAEMHHSTIQGTLLNAGLDRDVFGDIVTDGRTW 131
>gi|422739827|ref|ZP_16794993.1| S4 domain protein [Enterococcus faecalis TX2141]
gi|315144386|gb|EFT88402.1| S4 domain protein [Enterococcus faecalis TX2141]
Length = 260
Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + +D+ G Y QAER R + + + D V I
Sbjct: 36 TDFLDPRQAYILETLIRQNSDLSFTFYGSYEQAERKRCLIYPAYYMPQETDFGVVLFEII 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG+++ G+ RE GDII
Sbjct: 96 YPSKFATLSHGKILGTLMNVGVRREAFGDII 126
>gi|199598147|ref|ZP_03211569.1| Cell division protein, S4-like domain [Lactobacillus rhamnosus
HN001]
gi|229552082|ref|ZP_04440807.1| ribosomal protein S4e [Lactobacillus rhamnosus LMS2-1]
gi|385835145|ref|YP_005872919.1| S4 domain-containing protein [Lactobacillus rhamnosus ATCC 8530]
gi|418070509|ref|ZP_12707784.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
R0011]
gi|421769069|ref|ZP_16205778.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
LRHMDP2]
gi|421771332|ref|ZP_16207992.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
LRHMDP3]
gi|423077664|ref|ZP_17066356.1| S4 domain protein [Lactobacillus rhamnosus ATCC 21052]
gi|199590908|gb|EDY98992.1| Cell division protein, S4-like domain [Lactobacillus rhamnosus
HN001]
gi|229314515|gb|EEN80488.1| ribosomal protein S4e [Lactobacillus rhamnosus LMS2-1]
gi|355394636|gb|AER64066.1| S4 domain protein [Lactobacillus rhamnosus ATCC 8530]
gi|357539929|gb|EHJ23946.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
R0011]
gi|357553378|gb|EHJ35128.1| S4 domain protein [Lactobacillus rhamnosus ATCC 21052]
gi|411185465|gb|EKS52593.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
LRHMDP2]
gi|411185918|gb|EKS53044.1| RNA-binding S4 domain-containing protein [Lactobacillus rhamnosus
LRHMDP3]
Length = 259
Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ H E+ A + + +DF P + + D+K V GGYP AER RL +
Sbjct: 16 IDHFAELIETARTEYRAVLTDFTDPRQRLIAASLINAHDDMKLVHFGGYPHAERQRL-IF 74
Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGF 195
P+ + P D + L + F H G++L G+ R+ GDI+ + +
Sbjct: 75 APDYFAAQPADFDIRLLQVVYPEKFAEMHHSTIQGTLLNAGLDRDVFGDIVTDGRTW 131
>gi|325680294|ref|ZP_08159854.1| S4 domain protein [Ruminococcus albus 8]
gi|324108003|gb|EGC02259.1| S4 domain protein [Ruminococcus albus 8]
Length = 259
Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
L+ A + HS FL + E +MA K + + GGY AER L V +P
Sbjct: 23 LDWTEMAEEKYITKHSAFLDERQCRLCEKVMASVKYENY--LLWGGYEGAERKMLCV-YP 79
Query: 143 EALTSDPDIVAALSITG-NFGFQ---PCSHGDFLGSILGTGIAREKIGDIILQN 192
+ D DI ++ +T F ++ SH DFLGS++ GI R+ +GDI++ +
Sbjct: 80 QY--GDEDIKSSFPMTAVTFKYRSEDKLSHRDFLGSLMALGITRDCVGDILVGD 131
>gi|335357085|ref|ZP_08548955.1| RNA binding protein [Lactobacillus animalis KCTC 3501]
Length = 260
Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 121 VKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGT 178
+K A+GG+ QAER RL + +P+ + D + L I F +HG LG++ +
Sbjct: 57 IKVKAEGGFAQAERKRL-LFYPDYYEPQEKDFELQLLEINYPTKFVSLTHGQILGTLANS 115
Query: 179 GIAREKIGDII 189
G+ RE +GDII
Sbjct: 116 GLEREVLGDII 126
>gi|417986647|ref|ZP_12627214.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
32G]
gi|410525233|gb|EKQ00137.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
32G]
Length = 249
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
+ H E+ A + + +DF P ++ S+++ + D+K V GGYP AER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRII 73
Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ + A +D DI L I F H G++L G+ R+ GDII
Sbjct: 74 FAPSYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDII 125
>gi|52141591|ref|YP_085238.1| S4 domain-containing protein [Bacillus cereus E33L]
gi|51975060|gb|AAU16610.1| S4 domain protein [Bacillus cereus E33L]
Length = 255
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + D+ G +AER R ++
Sbjct: 15 VDKVLEW-KQAAEHHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|418007881|ref|ZP_12647753.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
UW4]
gi|410547966|gb|EKQ22187.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
UW4]
Length = 259
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
+ H E+ A + + +DF P ++ S+++ + D+K V GGYP AER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKIVHFGGYPHAERQRII 73
Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ + A +D DI L I F H G++L G+ R+ GDII
Sbjct: 74 FAPSYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDII 125
>gi|295091872|emb|CBK77979.1| Uncharacterized conserved protein, contains S4-like domain
[Clostridium cf. saccharolyticum K10]
Length = 251
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEK-LADVKAVAQGGYPQAER---C 135
K I+E+A R ++DFL L E + ++E+ L V+ + GGY AER C
Sbjct: 10 KRIMELAALCYQRDIPSYTDFLN---LNEQTVFHSIERSLPPVRYLITGGYEPAERKIVC 66
Query: 136 RLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
L +A I+ + F + +H D+LG+++ GI R +GDI++ G
Sbjct: 67 FLPSYEEDATNLPISILKVEPVNARFA-EGLTHRDYLGALMNLGIERGMVGDIVINEDG 124
>gi|227512216|ref|ZP_03942265.1| ribosomal protein S4e [Lactobacillus buchneri ATCC 11577]
gi|227084610|gb|EEI19922.1| ribosomal protein S4e [Lactobacillus buchneri ATCC 11577]
Length = 264
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
++FL P L + + + GGY AE R ++ +PE T D + A I
Sbjct: 38 TEFLNPRQLYILESIINRHDGIHFSTYGGYSGAELQR-AIVYPEYFTPKTDDFRITAFEI 96
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F +HG LGS++G GI R +GDII
Sbjct: 97 DYPSKFATLAHGKILGSLMGVGIERNVVGDII 128
>gi|196035794|ref|ZP_03103196.1| S4 domain protein [Bacillus cereus W]
gi|218905027|ref|YP_002452861.1| S4 domain-containing protein [Bacillus cereus AH820]
gi|195991443|gb|EDX55409.1| S4 domain protein [Bacillus cereus W]
gi|218535821|gb|ACK88219.1| S4 domain protein [Bacillus cereus AH820]
Length = 255
Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + D+ G +AER R ++
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|118479118|ref|YP_896269.1| S4 domain-containing protein [Bacillus thuringiensis str. Al Hakam]
gi|167636417|ref|ZP_02394716.1| S4 domain protein [Bacillus anthracis str. A0442]
gi|170688819|ref|ZP_02880022.1| S4 domain protein [Bacillus anthracis str. A0465]
gi|196038619|ref|ZP_03105927.1| S4 domain protein [Bacillus cereus NVH0597-99]
gi|196045924|ref|ZP_03113153.1| S4 domain protein [Bacillus cereus 03BB108]
gi|225865879|ref|YP_002751257.1| S4 domain protein [Bacillus cereus 03BB102]
gi|254683393|ref|ZP_05147253.1| S4 domain protein [Bacillus anthracis str. CNEVA-9066]
gi|254721431|ref|ZP_05183220.1| S4 domain protein [Bacillus anthracis str. A1055]
gi|254739815|ref|ZP_05197508.1| S4 domain protein [Bacillus anthracis str. Kruger B]
gi|301055388|ref|YP_003793599.1| RNA-binding S4 domain-containing protein [Bacillus cereus biovar
anthracis str. CI]
gi|376267794|ref|YP_005120506.1| hypothetical protein bcf_19360 [Bacillus cereus F837/76]
gi|421639653|ref|ZP_16080244.1| S4- like RNA binding domain protein [Bacillus anthracis str. BF1]
gi|423550354|ref|ZP_17526681.1| hypothetical protein IGW_00985 [Bacillus cereus ISP3191]
gi|118418343|gb|ABK86762.1| S4 domain protein [Bacillus thuringiensis str. Al Hakam]
gi|167528159|gb|EDR90946.1| S4 domain protein [Bacillus anthracis str. A0442]
gi|170667174|gb|EDT17934.1| S4 domain protein [Bacillus anthracis str. A0465]
gi|196023364|gb|EDX62042.1| S4 domain protein [Bacillus cereus 03BB108]
gi|196030342|gb|EDX68941.1| S4 domain protein [Bacillus cereus NVH0597-99]
gi|225787031|gb|ACO27248.1| S4 domain protein [Bacillus cereus 03BB102]
gi|300377557|gb|ADK06461.1| RNA-binding S4 domain protein [Bacillus cereus biovar anthracis
str. CI]
gi|364513594|gb|AEW56993.1| Hypothetical protein, contains S4- like RNA binding domain
[Bacillus cereus F837/76]
gi|401189970|gb|EJQ97020.1| hypothetical protein IGW_00985 [Bacillus cereus ISP3191]
gi|403393318|gb|EJY90563.1| S4- like RNA binding domain protein [Bacillus anthracis str. BF1]
Length = 255
Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + D+ G +AER R ++
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|359412534|ref|ZP_09204999.1| RNA-binding S4 domain protein [Clostridium sp. DL-VIII]
gi|357171418|gb|EHI99592.1| RNA-binding S4 domain protein [Clostridium sp. DL-VIII]
Length = 254
Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
V F TP V K L D K + G + AER +S + P + +
Sbjct: 34 VFGRSFYTPNVWKWFENNLST-RDFKVESDGLFEDAERRMVSFNNT---YESPFPMKLIK 89
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
I F +H DFLG IL GI R KIGD+++
Sbjct: 90 IQNTSKFTSLTHRDFLGGILSLGIERSKIGDLLV 123
>gi|227524052|ref|ZP_03954101.1| ribosomal protein S4e [Lactobacillus hilgardii ATCC 8290]
gi|227088791|gb|EEI24103.1| ribosomal protein S4e [Lactobacillus hilgardii ATCC 8290]
Length = 264
Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
++FL P L + + + GGY AE R ++ +PE T D + A I
Sbjct: 38 TEFLNPRQLYILESIINRHDGIHFSTYGGYSGAELQR-AIVYPEYFTPKTDDFRITAFEI 96
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F +HG LGS++G GI R +GDII
Sbjct: 97 DYPSKFATLAHGKILGSLMGVGIERNVVGDII 128
>gi|116494769|ref|YP_806503.1| cell division protein [Lactobacillus casei ATCC 334]
gi|417983352|ref|ZP_12623990.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
21/1]
gi|417992792|ref|ZP_12633144.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
CRF28]
gi|417996141|ref|ZP_12636424.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
M36]
gi|418001912|ref|ZP_12642040.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
UCD174]
gi|418014870|ref|ZP_12654459.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
Lpc-37]
gi|116104919|gb|ABJ70061.1| Cell division protein, S4-like domain [Lactobacillus casei ATCC
334]
gi|410528298|gb|EKQ03151.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
21/1]
gi|410532583|gb|EKQ07285.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
CRF28]
gi|410535850|gb|EKQ10460.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
M36]
gi|410545357|gb|EKQ19657.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
UCD174]
gi|410552692|gb|EKQ26707.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
Lpc-37]
Length = 259
Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
+ H E+ A + + +DF P ++ S+++ + D+K V GGYP AER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRII 73
Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ + A +D DI L I F H G++L G+ R+ GDII
Sbjct: 74 FAPSYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDII 125
>gi|392987361|ref|YP_006485954.1| S4 domain-containing protein [Enterococcus hirae ATCC 9790]
gi|392334781|gb|AFM69063.1| S4 domain-containing protein [Enterococcus hirae ATCC 9790]
Length = 293
Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + +++ GGY QAER R + +D D V+ I
Sbjct: 36 TDFLDPRQSYILETLIRQDSELHFSFYGGYEQAERKRCLIFPDYYEPTDEDFEVSLYEIH 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F +HG LG+++GTGI R GDII
Sbjct: 96 YPSKFASLTHGKVLGTLVGTGIKRAYFGDII 126
>gi|260889804|ref|ZP_05901067.1| S4 domain protein [Leptotrichia hofstadii F0254]
gi|260860410|gb|EEX74910.1| S4 domain protein [Leptotrichia hofstadii F0254]
Length = 298
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFLCSGCL 201
L I+ + F+ H DFLGS++G I RE +GD+IL+N+G SG +
Sbjct: 126 LKISIDSRFREYLHKDFLGSLMGLNIKRELMGDLILENEGKKISGYI 172
>gi|260496850|ref|ZP_05815970.1| RNA binding protein [Fusobacterium sp. 3_1_33]
gi|260196592|gb|EEW94119.1| RNA binding protein [Fusobacterium sp. 3_1_33]
Length = 241
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++A +A + V++S+ P S + K + +K +G E+ L
Sbjct: 5 LEKIENYIKLAEKADT---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57
Query: 138 SVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGF 195
+V +PE + D V I F H +LG+ILG GI RE +GD+I++N
Sbjct: 58 AV-YPEYFSEDYLYFPVKYFKIIKKSRFINLEHKHYLGNILGLGIKREILGDLIVKNDE- 115
Query: 196 LCSGCL 201
C G +
Sbjct: 116 -CYGII 120
>gi|402312199|ref|ZP_10831129.1| hypothetical protein HMPREF1140_0953 [Lachnospiraceae bacterium
ICM7]
gi|400370860|gb|EJP23842.1| hypothetical protein HMPREF1140_0953 [Lachnospiraceae bacterium
ICM7]
Length = 249
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 14/111 (12%)
Query: 85 LEMARRASSRREVLHSDFLT--PPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSV 139
L++AR A + V++S FL + E++ + L +++ V GGY +AER C
Sbjct: 13 LDLARNAYFKNIVMYSMFLNLNEQTIFETIQ--KDLPNIRYVMFGGYSEAERKIVCFYCD 70
Query: 140 GHPEALTSDPDIVAALSIT-GNFGF-QPCSHGDFLGSILGTGIAREKIGDI 188
PE D++ + I+ N F +H DFLG+++ GI R +GDI
Sbjct: 71 NIPEF-----DMLEYIKISPVNKKFADDLTHRDFLGALMNLGIERHMVGDI 116
>gi|451819455|ref|YP_007455656.1| putative RNA-binding S4 domain-containing protein [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451785434|gb|AGF56402.1| putative RNA-binding S4 domain-containing protein [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 254
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALS 156
V F TP V K L+ K + G + +AER +S + + P + L
Sbjct: 34 VFGRSFYTPNVWKWFEENLQS-NYFKVESNGLFQEAERRMVSFNNSD---ESPFPMKLLK 89
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
I F +H D+LG IL GI R KIGD+++
Sbjct: 90 IENTSKFTSLTHRDYLGGILSLGIERNKIGDLLV 123
>gi|336421662|ref|ZP_08601818.1| hypothetical protein HMPREF0993_01195 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336000133|gb|EGN30286.1| hypothetical protein HMPREF0993_01195 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 251
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K + E++R A +R V S+FL L + + GGY +ER +++
Sbjct: 10 KRLAELSRIAYTREIVTFSEFLNLNELNILHTTPKDMLLSHYKTYGGYGLSER-QMAAFL 68
Query: 142 PEALTSD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
P+AL D P + +S + SH D+LG+++ GI R K+GDI++++
Sbjct: 69 PDALYYDYQYPIQIIEISPVNRKFAEELSHRDYLGAVMNLGIERCKLGDILIED 122
>gi|227535234|ref|ZP_03965283.1| ribosomal protein S4e [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|227187118|gb|EEI67185.1| ribosomal protein S4e [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
Length = 259
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
+ H E+ A + + +DF P ++ S+++ + D+K V GGYP AER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRII 73
Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ + A +D DI L I F H G++L G+ R+ GDII
Sbjct: 74 FAPSYFSATAADFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDII 125
>gi|345860008|ref|ZP_08812337.1| S4 domain protein [Desulfosporosinus sp. OT]
gi|344326869|gb|EGW38318.1| S4 domain protein [Desulfosporosinus sp. OT]
Length = 265
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
+GG+P+AER R+ VG P T DP ++ + + + H LGS++G G R+
Sbjct: 66 EGGFPEAERVRIIVG-PWGETLDPTDADISLIWVRPSDSRAQLEHRQILGSLMGLGFKRD 124
Query: 184 KIGDIILQNKGFLCS 198
+GDI +GF +
Sbjct: 125 VLGDIQAGRRGFYIA 139
>gi|297588313|ref|ZP_06946956.1| probable RNA binding protein [Finegoldia magna ATCC 53516]
gi|297573686|gb|EFH92407.1| probable RNA binding protein [Finegoldia magna ATCC 53516]
Length = 258
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 95 REVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG----HPEALTSDPD 150
+ + +DF+ P ++ + L DV + E + + + E + D
Sbjct: 31 KTIYATDFMNPKEIEYATSILNAETDVGYMVTNCPVNCENKIIIMWDRYCYSEEYINMFD 90
Query: 151 IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGF-LCS 198
+ L I + Q +H D LG++L GI REKIGDI NK F LC+
Sbjct: 91 YIGLLEIQTD---QEITHRDILGAVLNLGINREKIGDIFTHNKRFYLCA 136
>gi|312899018|ref|ZP_07758405.1| S4 domain protein [Megasphaera micronuciformis F0359]
gi|310619925|gb|EFQ03498.1| S4 domain protein [Megasphaera micronuciformis F0359]
Length = 261
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 58/131 (44%)
Query: 64 NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
N D++++ + E ++++A + R S+F +P ++ ++
Sbjct: 3 NRDNIIRYYKGMDNGEFAARLIDLADSTNKGRPYAVSEFASPGAVQIGETVKAHATGLEL 62
Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GGY AER +L+ + + A +T + ++ H D LGS+ G GI R
Sbjct: 63 RINGGYEGAERVKLAFVRQDYDGPVDFGITACRLTWDVRYRLLGHRDVLGSLTGLGIDRS 122
Query: 184 KIGDIILQNKG 194
+ GDII+ G
Sbjct: 123 RFGDIIMHEDG 133
>gi|229168638|ref|ZP_04296360.1| RNA-binding S4 domain protein [Bacillus cereus AH621]
gi|228614794|gb|EEK71897.1| RNA-binding S4 domain protein [Bacillus cereus AH621]
Length = 241
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
++A+ +V +DFL P + M + + DV G P+AER R + +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFGGAMPEAERKRALI-YPDYLELN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 66 EEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQE 111
>gi|255659719|ref|ZP_05405128.1| S4 domain protein [Mitsuokella multacida DSM 20544]
gi|260848293|gb|EEX68300.1| S4 domain protein [Mitsuokella multacida DSM 20544]
Length = 264
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 127 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGY AER R H + A T +A L + N F SH D LG+++G GI R+++
Sbjct: 68 GGYQGAERARAMYIHEDFAGTPSGFDIACLKASWNGQFARLSHRDVLGALMGLGIERDRL 127
Query: 186 GDIIL 190
GD+++
Sbjct: 128 GDLLV 132
>gi|317969027|ref|ZP_07970417.1| RNA-binding S4 [Synechococcus sp. CB0205]
Length = 260
Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
D LL+G + A+ + + E A R E + S FL +L+E+ L L ++ +
Sbjct: 5 DQLLQGCRNPEAMGALISLAEQALRTW---EPVWSYFLAADLLEEAQERLGSLTELTLSS 61
Query: 126 QGGYPQAERCRLSVGHPEALTSD-PDI-VAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GG+PQAER RL + E ++ P+ + L ITGNF F P D ++ G
Sbjct: 62 DGGWPQAERRRLLLRRVEISDAERPEAPLQGLVITGNFLFDPAEPLDVRQGLIQAGAQAG 121
Query: 184 KIGDIILQ 191
+GDI ++
Sbjct: 122 DLGDIWMR 129
>gi|365843208|ref|ZP_09384157.1| S4 domain protein [Flavonifractor plautii ATCC 29863]
gi|364573034|gb|EHM50556.1| S4 domain protein [Flavonifractor plautii ATCC 29863]
Length = 266
Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 65 FDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAV 124
+ L + G++ + LE+AR+ R + FL+P L + +
Sbjct: 7 LNKLARDNGERLLLARALDKLELARQ---RNIPTCTGFLSPQERASVENLLNACGHPRHI 63
Query: 125 AQGGYPQAER--CRLSVGHPEALTSDPD----IVAALSITGNFGFQPCSHGDFLGSILGT 178
GGY AER C EA D V AL T + G Q +H DFLGSILG
Sbjct: 64 FFGGYEGAERTVCAFLPDWQEAEDWQGDGESCPVRALRCTWSGG-QKLTHRDFLGSILGL 122
Query: 179 GIAREKIGDIILQN 192
G+ REK+GD+++ +
Sbjct: 123 GLDREKVGDLLVTD 136
>gi|30263899|ref|NP_846276.1| S4 domain-containing protein [Bacillus anthracis str. Ames]
gi|47529329|ref|YP_020678.1| s4 domain-containing protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186747|ref|YP_029999.1| S4 domain-containing protein [Bacillus anthracis str. Sterne]
gi|65321226|ref|ZP_00394185.1| COG2302: Uncharacterized conserved protein, contains S4-like domain
[Bacillus anthracis str. A2012]
gi|165872308|ref|ZP_02216945.1| S4 domain protein [Bacillus anthracis str. A0488]
gi|167641130|ref|ZP_02399385.1| S4 domain protein [Bacillus anthracis str. A0193]
gi|170708812|ref|ZP_02899248.1| S4 domain protein [Bacillus anthracis str. A0389]
gi|177654925|ref|ZP_02936642.1| S4 domain protein [Bacillus anthracis str. A0174]
gi|190566209|ref|ZP_03019128.1| S4 domain protein [Bacillus anthracis str. Tsiankovskii-I]
gi|227813193|ref|YP_002813202.1| S4 domain-containing protein [Bacillus anthracis str. CDC 684]
gi|229601099|ref|YP_002868133.1| S4 domain protein [Bacillus anthracis str. A0248]
gi|254735937|ref|ZP_05193643.1| S4 domain protein [Bacillus anthracis str. Western North America
USA6153]
gi|254751005|ref|ZP_05203044.1| S4 domain protein [Bacillus anthracis str. Vollum]
gi|254757937|ref|ZP_05209964.1| S4 domain protein [Bacillus anthracis str. Australia 94]
gi|421507439|ref|ZP_15954359.1| S4 domain-containing protein [Bacillus anthracis str. UR-1]
gi|30258543|gb|AAP27762.1| S4 domain protein [Bacillus anthracis str. Ames]
gi|47504477|gb|AAT33153.1| S4 domain protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49180674|gb|AAT56050.1| S4 domain protein [Bacillus anthracis str. Sterne]
gi|164711984|gb|EDR17524.1| S4 domain protein [Bacillus anthracis str. A0488]
gi|167510910|gb|EDR86301.1| S4 domain protein [Bacillus anthracis str. A0193]
gi|170126297|gb|EDS95188.1| S4 domain protein [Bacillus anthracis str. A0389]
gi|172080436|gb|EDT65523.1| S4 domain protein [Bacillus anthracis str. A0174]
gi|190563128|gb|EDV17094.1| S4 domain protein [Bacillus anthracis str. Tsiankovskii-I]
gi|227003302|gb|ACP13045.1| S4 domain protein [Bacillus anthracis str. CDC 684]
gi|229265507|gb|ACQ47144.1| S4 domain protein [Bacillus anthracis str. A0248]
gi|401822573|gb|EJT21723.1| S4 domain-containing protein [Bacillus anthracis str. UR-1]
Length = 255
Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + D+ G +AER R +
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLVVNEEEFQVEGLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|423389793|ref|ZP_17367019.1| hypothetical protein ICG_01641 [Bacillus cereus BAG1X1-3]
gi|423418194|ref|ZP_17395283.1| hypothetical protein IE3_01666 [Bacillus cereus BAG3X2-1]
gi|401106467|gb|EJQ14428.1| hypothetical protein IE3_01666 [Bacillus cereus BAG3X2-1]
gi|401641884|gb|EJS59601.1| hypothetical protein ICG_01641 [Bacillus cereus BAG1X1-3]
Length = 255
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + +V G P++ER R ++
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GEVAVRFDGAMPESERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQE 125
>gi|381209821|ref|ZP_09916892.1| hypothetical protein LGrbi_07846 [Lentibacillus sp. Grbi]
Length = 258
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 100 SDFLTPPVLK-ESMMALEKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALSI 157
+DFL P + +A + +++ GG AER R+ + + +T D + L
Sbjct: 34 TDFLNPREQQIVETLARTSMEELRVYKHGGSVNAERRRVIIAPMYDEVTDDSFQLTLLQG 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ + F H D +GS L GI R+K+GDI+ +N
Sbjct: 94 SYHDKFVSLGHRDVMGSFLSLGIKRQKLGDIMAEN 128
>gi|224541714|ref|ZP_03682253.1| hypothetical protein CATMIT_00886 [Catenibacterium mitsuokai DSM
15897]
gi|224525318|gb|EEF94423.1| S4 domain protein [Catenibacterium mitsuokai DSM 15897]
Length = 248
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCR 136
E V IL+ +A + ++ + FL P + ES++ E +K A GG+ AE R
Sbjct: 10 EFVSKILDYKDQALYSQRMILTQFLDPHQQSIVESVIGHE----LKVEADGGFDGAENKR 65
Query: 137 LSVGHPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ + P+ +P+ V + N F H D LG+++ GI R+ IGDI +
Sbjct: 66 VLIA-PDFYEFEPEDFKVTVFRVDYNDTFGKLKHSDVLGALMHLGIKRQCIGDINEEPLS 124
Query: 195 FLC 197
F C
Sbjct: 125 FAC 127
>gi|366166912|ref|ZP_09466667.1| RNA-binding S4 protein [Acetivibrio cellulolyticus CD2]
Length = 263
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 3/133 (2%)
Query: 64 NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
N +++LK + V +L+ + ++ +DFL P + LE
Sbjct: 2 NREEILKRISKSEDKLVVAKVLDKLLLSEKTNKLAITDFLDPHLQSVVSKCLESNNVGNY 61
Query: 124 VAQGGYPQAERCRLSVGHPEA-LTSDPDIVAALSI--TGNFGFQPCSHGDFLGSILGTGI 180
+ GGY AER ++ L +P++ + + +H D+LGS++G GI
Sbjct: 62 LFYGGYDGAERAVVAFCPSNMPLIQEPELAGLFKVLKISLMHRENMTHRDYLGSLMGLGI 121
Query: 181 AREKIGDIILQNK 193
REKIGDI+++++
Sbjct: 122 KREKIGDILVKDE 134
>gi|452974556|gb|EME74376.1| RNA-binding protein YlmH [Bacillus sonorensis L12]
Length = 258
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 9/124 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
+ +LE + + + + +DFL P V+ S++ + +VK GG+ +AER R +
Sbjct: 16 IDQVLEWKQIVADQYRMKLTDFLDPREQVILNSLVG--QPDEVKLGFFGGFSEAERKR-A 72
Query: 139 VGHPE-ALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN--KG 194
+ +PE A S D + A + F H + LGS++G G+ R+K GD+I
Sbjct: 73 ILYPEYAEPSAEDFQLQAYEVLYPQKFASIEHRELLGSLMGIGLKRQKFGDLIYAGGIWQ 132
Query: 195 FLCS 198
F+CS
Sbjct: 133 FVCS 136
>gi|227509386|ref|ZP_03939435.1| ribosomal protein S4e [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227191098|gb|EEI71165.1| ribosomal protein S4e [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 264
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
++FL P L + + + GGY AE R ++ +PE T D + A I
Sbjct: 38 TEFLNPRQLYILESIINRHDGIHFSTYGGYSGAELQR-AIVYPEYFTPKTDDFRITAFEI 96
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F +HG LGS++G GI R +GDII
Sbjct: 97 DYPSKFATLAHGKILGSLMGAGIERNVVGDII 128
>gi|160914284|ref|ZP_02076505.1| hypothetical protein EUBDOL_00294 [Eubacterium dolichum DSM 3991]
gi|158433911|gb|EDP12200.1| S4 domain protein [Eubacterium dolichum DSM 3991]
Length = 253
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTP--PVLKESMMALEKLADVKAVAQGGYPQAERCR 136
E VK I + + R+ ++ + F +P + S+ + + GGY AER R
Sbjct: 16 EFVKRIYDYIDQCEVRKRIIVTPFFSPDQSAITRSICGKQIMYK----EDGGYKGAERVR 71
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
+ P ++ S++ FG SH D LG+++ G+ RE GDI+++
Sbjct: 72 FAFLPFTTNYQFPTVILKASVSATFGM--LSHRDVLGALMNLGLRREMSGDILVK 124
>gi|399888859|ref|ZP_10774736.1| RNA binding protein [Clostridium arbusti SL206]
Length = 256
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
DK A+ + + +A A + V ++F TP + + + L L ++ G + +E
Sbjct: 14 DKLALSNIFDKINLA--AKIEKPVYTNEFYTPDICND-ISKLSDLLGLQISIYGIFENSE 70
Query: 134 RCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
R L + E +++ P + + I F H D++G+I+ GI R K GD+I++N
Sbjct: 71 RNML-LFSKEKVSNFP--INLIKIENKSKFTDLGHRDYMGAIMSLGINRNKFGDLIVENN 127
Query: 194 GFLCSGC 200
+ C
Sbjct: 128 CCFVAVC 134
>gi|331269359|ref|YP_004395851.1| YlmH protein [Clostridium botulinum BKT015925]
gi|329125909|gb|AEB75854.1| YlmH protein, putative [Clostridium botulinum BKT015925]
Length = 261
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 97 VLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV---GHPEALTSDPDIVA 153
+ ++F +P + K+ ++ L K G + +++R +S+ + + + P V
Sbjct: 35 IYFNEFYSPTIWKK-LLNLSSKIRCKIGTYGIFQESDRRAISILSNYDDDEMYNYP--VK 91
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
L+I F H DFLG+++ GI REK+GD+I+
Sbjct: 92 LLNIINMSAFSKLKHSDFLGALMSLGIKREKLGDLIV 128
>gi|331091119|ref|ZP_08339961.1| hypothetical protein HMPREF9477_00604 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405341|gb|EGG84877.1| hypothetical protein HMPREF9477_00604 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 251
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K +LE++R A + V +SDFL L + + GGY +ER ++
Sbjct: 10 KRLLELSRVAYQKGIVTYSDFLNLNELNILHTTPKNEFFTQYETFGGYSDSER-QMVAFL 68
Query: 142 PEALTSD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
P+AL P V +S + SH D+LG+IL GI R K+GDI+L
Sbjct: 69 PDALYYAHFYPIKVLKISPLQKKFAESLSHRDYLGAILNLGIDRCKLGDILL 120
>gi|49478438|ref|YP_037959.1| S4 domain-containing protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49329994|gb|AAT60640.1| S4 domain protein [Bacillus thuringiensis serovar konkukian str.
97-27]
Length = 255
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + D+ G AER R ++
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSHAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLVVNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|406669221|ref|ZP_11076501.1| hypothetical protein HMPREF9707_00404 [Facklamia ignava CCUG 37419]
gi|405584018|gb|EKB57944.1| hypothetical protein HMPREF9707_00404 [Facklamia ignava CCUG 37419]
Length = 260
Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 102 FLTPPVLKESMMA---LEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALS 156
FLTP +E M+A +E+ D K GG ER R + +P+ +D D + L
Sbjct: 38 FLTP---REQMIAQQIVEEYGDFKIAFYGGIHATERRR-GLIYPDYYQPTDVDYGLTLLQ 93
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ F SHG LG+++ G+ R +IGDII
Sbjct: 94 LHYPVKFADISHGKILGTLMSQGVDRNRIGDII 126
>gi|423452799|ref|ZP_17429652.1| hypothetical protein IEE_01543 [Bacillus cereus BAG5X1-1]
gi|401139358|gb|EJQ46920.1| hypothetical protein IEE_01543 [Bacillus cereus BAG5X1-1]
Length = 255
Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V ++E ++A+ +V +DFL P + M + + DV G P+AER R ++
Sbjct: 15 VDKVIEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDVAVRFDGAMPEAERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ R+K GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTRDKCGDILLQE 125
>gi|417989538|ref|ZP_12630042.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
A2-362]
gi|410537925|gb|EKQ12487.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
A2-362]
Length = 259
Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
+ H E+ A + + +DF P ++ S+++ + D+K V GGYP AER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPHAERQRII 73
Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ + A D DI L I F H G++L G+ R+ GDII
Sbjct: 74 FAPSYFSATADDFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDII 125
>gi|312793530|ref|YP_004026453.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180670|gb|ADQ40840.1| RNA-binding S4 domain protein [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 260
Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 99 HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 157
+SDFL+P +K ++ L K + + GGY +ER L++ + ++ +
Sbjct: 33 YSDFLSPFAIKYAVEVLLKSQNHILHRCWGGYEGSERNILAIFSSDFEEYAENLTYPIQT 92
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFLC 197
SH LGS++G G+ R+KIGDI+++ L
Sbjct: 93 ILIEAKNNLSHRQILGSLIGNGLKRDKIGDILVKENSALV 132
>gi|237741192|ref|ZP_04571673.1| RNA binding protein [Fusobacterium sp. 4_1_13]
gi|229430724|gb|EEO40936.1| RNA binding protein [Fusobacterium sp. 4_1_13]
Length = 241
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++A + V++S+ P S + K + +K +G E+ L
Sbjct: 5 LEKIENYIKLAEKTDI---VIYSNQFFPV----SQLNNLKYSGMKFSFKGLNEDCEKKLL 57
Query: 138 SVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
+V +PE T D P V I F H +LG+ILG GI RE +GD+I++N
Sbjct: 58 AV-YPEYFTEDYLYFP--VKYFKIIKKSKFINLEHKHYLGNILGLGIKREILGDLIVKNN 114
Query: 194 GFLCSGCL 201
C G +
Sbjct: 115 E--CYGII 120
>gi|182418004|ref|ZP_02949310.1| S4 domain protein [Clostridium butyricum 5521]
gi|237667539|ref|ZP_04527523.1| RNA-binding S4 domain protein [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182378175|gb|EDT75710.1| S4 domain protein [Clostridium butyricum 5521]
gi|237655887|gb|EEP53443.1| RNA-binding S4 domain protein [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 254
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 71 GVGDKNAIEEVKHILEMARRASSRR-EVLHSDFLTPPVLKESMMALEKL---ADVKAVAQ 126
G DKN EV ++ E + A + + + F TP + + EK + K +
Sbjct: 10 GDEDKN---EVLNLYEKYKLARDKEIPMFGNSFYTPNIWR----WFEKNFINSSCKVESN 62
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
G + +ER +S + TS P + L I F +H DFLG IL GI R KIG
Sbjct: 63 GVFEDSERRMISFNNVYN-TSFP--MKLLKIENTSKFNELTHKDFLGGILALGIERNKIG 119
Query: 187 DIILQN 192
D+++++
Sbjct: 120 DLLVKD 125
>gi|392949181|ref|ZP_10314772.1| cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus pentosus KCA1]
gi|392435596|gb|EIW13529.1| cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus pentosus KCA1]
Length = 261
Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 66 DDLLKGVGDKNA--IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
D+L + D A IE+V L R+ + + + + FL P + + +L DV+
Sbjct: 3 DNLKQHFRDSEAPFIEQVTGWL---RQVADQYRPILTAFLNPRQVYIAQTLANQLDDVRM 59
Query: 124 VAQGGYPQAERCRLSVGHP--EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 181
A GG+ AE R+ P E T+D I +I F HG LG++ G+
Sbjct: 60 RAYGGFEGAELQRILFYPPYYEPETADFQI-TLFNIVYPVKFATLKHGQILGTLANAGVE 118
Query: 182 REKIGDIIL--QNKGFLCSGCL 201
R+ GDII ++ F+C +
Sbjct: 119 RDVFGDIITDGEHWQFVCESEM 140
>gi|392957451|ref|ZP_10322974.1| hypothetical protein A374_11955 [Bacillus macauensis ZFHKF-1]
gi|391876414|gb|EIT85011.1| hypothetical protein A374_11955 [Bacillus macauensis ZFHKF-1]
Length = 257
Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +L+ R V +DFL P + + K AD GG +ER R +
Sbjct: 15 IDQVLQWKNEVEERFSVKLTDFLDPREQDIATSIIGKDADSSLSFWGGSSHSERRRALIH 74
Query: 141 HP--EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
H E SD ++ + I F H D LG+++ G+ R K GDI+
Sbjct: 75 HAYLEPKPSDFEL-SVFEIQYPTKFSSLEHRDVLGALMNIGVKRSKFGDIV 124
>gi|341821086|emb|CCC57422.1| ribosomal protein S4e [Weissella thailandensis fsh4-2]
Length = 261
Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV--GHPEALTSDPDIVAALSI 157
++FL P + + + D+K GGY AE RL + + + D D+ + I
Sbjct: 36 TNFLNPREIYILTTLVNQQDDLKVFQYGGYQNAENQRLLIAPNYYVPVLDDFDL-KVIQI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F H LG+ + GIAR+ IGDII
Sbjct: 95 KYPEKFTTLHHSTILGTFMHNGIARQSIGDII 126
>gi|344996021|ref|YP_004798364.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
lactoaceticus 6A]
gi|343964240|gb|AEM73387.1| RNA-binding S4 domain protein [Caldicellulosiruptor lactoaceticus
6A]
Length = 260
Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 99 HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 157
+SDFL+P +K ++ L K + + GGY +ER L++ + ++ +
Sbjct: 33 YSDFLSPFAIKYAVEVLLKNQNHILHRCWGGYEGSERNILAIFSSDFEEYAENLTYPIQT 92
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFLC 197
SH LGS++G G+ R+KIGDI+++ L
Sbjct: 93 ILIEAKNNLSHRQILGSLIGNGLKRDKIGDILVKENSALV 132
>gi|317058533|ref|ZP_07923018.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
gi|313684209|gb|EFS21044.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
Length = 257
Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 121 VKAVAQGGYPQAERCRLSVGHPEALTSD-----PDIVAALSITGNFGFQPCSHGDFLGSI 175
+KAV GGY A R R+ PE L D++ L +T +H D+LG+
Sbjct: 53 IKAVFWGGYEGAMR-RILFFLPEYLEEHSYETFEDVLGVLEVTKLDKNLSLNHRDYLGAF 111
Query: 176 LGTGIAREKIGDIILQNKG 194
G G+ RE +GDI+++ G
Sbjct: 112 TGLGLKRETMGDILVRENG 130
>gi|348025437|ref|YP_004765241.1| S4 domain protein [Megasphaera elsdenii DSM 20460]
gi|341821490|emb|CCC72414.1| S4 domain protein [Megasphaera elsdenii DSM 20460]
Length = 261
Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 10/136 (7%)
Query: 64 NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
N D +++ + E ++++A + R S+F++P ++ + +
Sbjct: 3 NRDRIIRYYQGTDNGELAARLIDLADSTAKGRPYAVSEFVSPGAVQIGETIQAHVPSLVL 62
Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI-----VAALSITGNFGFQPCSHGDFLGSILGT 178
GGY AER +L+ +++D D + A ++ + ++ H D LGS++
Sbjct: 63 RTFGGYEGAERVKLAF-----VSADYDGPVDFGITACRLSWDDRYRLLGHRDVLGSLMSL 117
Query: 179 GIAREKIGDIILQNKG 194
G+ RE+ GDII+Q G
Sbjct: 118 GVGRERFGDIIMQEAG 133
>gi|407977672|ref|ZP_11158509.1| hypothetical protein BA1_00690 [Bacillus sp. HYC-10]
gi|407415925|gb|EKF37506.1| hypothetical protein BA1_00690 [Bacillus sp. HYC-10]
Length = 258
Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +L + A + + +DFL P + ++ ++ + GGY +AER R ++
Sbjct: 16 VDQVLGWKKIALDQYRLKLTDFLDPREQFITQSVIQHSDELGIMFFGGYEKAERKR-ALI 74
Query: 141 HPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL--QNKG 194
+P+ L +P I ++ + F H LGS++GTG+ R+K GD++ +
Sbjct: 75 YPDYL--EPSIQDFELSYFQVNYAKKFISIEHPKLLGSLIGTGLKRQKFGDLLFLDDDVK 132
Query: 195 FLCSG 199
F+C+
Sbjct: 133 FICTS 137
>gi|150016467|ref|YP_001308721.1| RNA-binding S4 domain-containing protein [Clostridium beijerinckii
NCIMB 8052]
gi|149902932|gb|ABR33765.1| RNA-binding S4 domain protein [Clostridium beijerinckii NCIMB 8052]
Length = 254
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 97 VLHSDFLTPPVLKESMMALEK---LADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVA 153
V F TP + M EK D+K + G +ER +S + + P +
Sbjct: 34 VFGKSFYTPNI----WMWFEKNLSSNDLKIESNGLLDDSERRMVSFNN---IYKSPFPMK 86
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ I F +H DFLG IL GI R KIGD+++ N
Sbjct: 87 LIKIESTSKFSNLTHRDFLGGILSLGIERNKIGDLLVDN 125
>gi|315917373|ref|ZP_07913613.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
gi|313691248|gb|EFS28083.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
Length = 257
Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 121 VKAVAQGGYPQAERCRLSVGHPEALT-----SDPDIVAALSITGNFGFQPCSHGDFLGSI 175
+KAV GGY A R R+ PE L + D++ L +T +H D+LG+
Sbjct: 53 IKAVFWGGYEGAMR-RILFFLPEYLEEYSYETFEDVLGVLEVTKLDKNLSLNHRDYLGAF 111
Query: 176 LGTGIAREKIGDIILQNKG 194
G G+ RE +GDI+++ G
Sbjct: 112 TGLGLKRETMGDILVRENG 130
>gi|148379440|ref|YP_001253981.1| hypothetical protein CBO1468 [Clostridium botulinum A str. ATCC
3502]
gi|153934077|ref|YP_001383819.1| hypothetical protein CLB_1493 [Clostridium botulinum A str. ATCC
19397]
gi|153937536|ref|YP_001387369.1| hypothetical protein CLC_1505 [Clostridium botulinum A str. Hall]
gi|153940910|ref|YP_001390816.1| hypothetical protein CLI_1552 [Clostridium botulinum F str.
Langeland]
gi|168180126|ref|ZP_02614790.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
gi|168182397|ref|ZP_02617061.1| conserved hypothetical protein [Clostridium botulinum Bf]
gi|170755006|ref|YP_001781106.1| hypothetical protein CLD_3082 [Clostridium botulinum B1 str. Okra]
gi|384461868|ref|YP_005674463.1| hypothetical protein CBF_1531 [Clostridium botulinum F str. 230613]
gi|429247515|ref|ZP_19210758.1| hypothetical protein CFSAN001628_021640 [Clostridium botulinum
CFSAN001628]
gi|148288924|emb|CAL83011.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
3502]
gi|152930121|gb|ABS35621.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
19397]
gi|152933450|gb|ABS38949.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
gi|152936806|gb|ABS42304.1| conserved hypothetical protein [Clostridium botulinum F str.
Langeland]
gi|169120218|gb|ACA44054.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
gi|182669007|gb|EDT80983.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
gi|182674343|gb|EDT86304.1| conserved hypothetical protein [Clostridium botulinum Bf]
gi|295318885|gb|ADF99262.1| conserved hypothetical protein [Clostridium botulinum F str.
230613]
gi|428755469|gb|EKX78097.1| hypothetical protein CFSAN001628_021640 [Clostridium botulinum
CFSAN001628]
Length = 256
Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 9/128 (7%)
Query: 74 DKNAIEEVKHILEMARRA----SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGY 129
+K IE+ +L++ +A + +++ S F T + K S L ++K G +
Sbjct: 8 NKVNIEDKSLLLDIYNKAILAEKTGKQLFSSYFCTNNICKASC-ELAHFLNLKIDIAGVF 66
Query: 130 PQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
AER +G D +V A I+ N F H DFLG++ GI REK+GD++
Sbjct: 67 KDAER--QIIGFNVYDIEDFPVVLA-KISYNSKFVNLEHKDFLGALTSLGIKREKMGDLV 123
Query: 190 L-QNKGFL 196
L QN ++
Sbjct: 124 LKQNNCYV 131
>gi|429204845|ref|ZP_19196126.1| RNA binding protein [Lactobacillus saerimneri 30a]
gi|428146707|gb|EKW98942.1| RNA binding protein [Lactobacillus saerimneri 30a]
Length = 264
Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALT-SDPDI-VAALSI 157
++FL P + + + + DV+ GGY AER R ++ +PE T ++ D V L I
Sbjct: 36 TEFLDPRMQYIAQSLVGQRDDVRVSFFGGYANAERKR-ALFYPEYFTPTEADFKVVPLEI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F +HG LG+ + G+ R +GDII
Sbjct: 95 GYPQKFSQLAHGQILGTFVNAGLDRNVLGDII 126
>gi|336054343|ref|YP_004562630.1| cell-division protein [Lactobacillus kefiranofaciens ZW3]
gi|333957720|gb|AEG40528.1| Cell-division protein [Lactobacillus kefiranofaciens ZW3]
Length = 266
Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 98 LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDP-DI-VAAL 155
L +DFL P K +++ DV GGYP+AE+ R+ + E L P D +
Sbjct: 38 LLTDFLDPG--KRTILKTVVGNDVFIQEYGGYPEAEKKRVYLSE-EWLNLQPADYQIQPY 94
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
I + F SH LG++ +GI + GDII +KG
Sbjct: 95 EIKYSQKFNRISHSAILGTLANSGIDTDTFGDIITDSKG 133
>gi|239631634|ref|ZP_04674665.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301066330|ref|YP_003788353.1| cell division protein, S4-like domain [Lactobacillus casei str.
Zhang]
gi|417980576|ref|ZP_12621256.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
12A]
gi|239526099|gb|EEQ65100.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300438737|gb|ADK18503.1| Cell division protein, S4-like domain [Lactobacillus casei str.
Zhang]
gi|410524899|gb|EKP99806.1| S4-like RNA binding domain-containing protein [Lactobacillus casei
12A]
Length = 259
Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRL- 137
+ H E+ A + + +DF P ++ S+++ + D+K V GGYP+AER R+
Sbjct: 16 IDHFAELIETARTEYRPVLTDFTDPRQRLIATSLVSADD--DIKLVHFGGYPRAERQRII 73
Query: 138 -SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ + A D DI L I F H G++L G+ R+ GDII
Sbjct: 74 FAPSYFSATAVDFDI-RLLQIIYPEKFAELHHSTVQGTLLNAGLDRDVFGDII 125
>gi|442805086|ref|YP_007373235.1| RNA-binding S4 domain-containing protein [Clostridium stercorarium
subsp. stercorarium DSM 8532]
gi|442740936|gb|AGC68625.1| RNA-binding S4 domain-containing protein [Clostridium stercorarium
subsp. stercorarium DSM 8532]
Length = 265
Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 124 VAQGGYPQAERCRL----SVGHPEALTSDPDIVAALSITGNFG-FQPCSHGDFLGSILGT 178
V GGY A+R L PE +T D DI I + +H D LG+ILGT
Sbjct: 63 VFYGGYEGAQRAVLIFLPDYIRPEEITDD-DINPLSCIRAKYSSVNSVTHRDILGAILGT 121
Query: 179 GIAREKIGDIILQ 191
G+ RE IGDI++
Sbjct: 122 GLKREVIGDILVN 134
>gi|256846979|ref|ZP_05552425.1| RNA-binding S4 domain-containing protein [Lactobacillus
coleohominis 101-4-CHN]
gi|256715643|gb|EEU30618.1| RNA-binding S4 domain-containing protein [Lactobacillus
coleohominis 101-4-CHN]
Length = 261
Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
++A A R VL ++FL P + + + + AD++ + GGYP AE R + +P+
Sbjct: 24 QIATAAGEYRPVL-TNFLNPRQIFIAETLVNREADLRFQSWGGYPDAEMQRFLI-YPDYY 81
Query: 146 TSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDII 189
+ + N+ F H LG++LG+G+ R GDI+
Sbjct: 82 QPNREDFQINYYQINYPTKFVELHHRQILGTLLGSGLTRGSFGDIL 127
>gi|423483488|ref|ZP_17460178.1| hypothetical protein IEQ_03266 [Bacillus cereus BAG6X1-2]
gi|401141039|gb|EJQ48594.1| hypothetical protein IEQ_03266 [Bacillus cereus BAG6X1-2]
Length = 255
Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++A+ +V +DFL P + M + + D+ G P++ER R ++
Sbjct: 15 VDKVLEW-KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDIAVRFDGVMPESERKR-ALI 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFFTLEHRQILGAFMSLGLTREKCGDILLQE 125
>gi|261367029|ref|ZP_05979912.1| putative YlmH protein [Subdoligranulum variabile DSM 15176]
gi|282571147|gb|EFB76682.1| S4 domain protein [Subdoligranulum variabile DSM 15176]
Length = 245
Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
++ + E+ R A +R ++ FL+ + A K A GGY +AER L +
Sbjct: 1 MRRVEELCRVAQNRGIPRYTGFLSDREQVLAQAACHKALFSAARFWGGYDEAERKVLCLE 60
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
PEA +P L+ + H D+LGSIL G+ R +GD+I
Sbjct: 61 PPEAWQEEPLAYLRLAALNAGEDKMPGHRDYLGSILALGLDRACLGDLI 109
>gi|296328063|ref|ZP_06870597.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
gi|296154839|gb|EFG95622.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
Length = 241
Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++A + + V++S+ P S + K + +K +G E+ L
Sbjct: 5 LEKIENYIKLAEKTDT---VIYSNQFFPV----SQLNNLKYSGIKFSFKGLNEDCEKKLL 57
Query: 138 SVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
+V +PE T D P V I F H +LG+IL GI RE +GD+I++N
Sbjct: 58 AV-YPECFTEDYLYFP--VKYFKIIKKSKFISLEHKHYLGNILSLGIKREILGDLIVKND 114
Query: 194 GFLCSGCL 201
C G +
Sbjct: 115 E--CYGII 120
>gi|336395776|ref|ZP_08577175.1| S4 domain-containing protein [Lactobacillus farciminis KCTC 3681]
Length = 264
Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 100 SDFLTPPVLKESMMA---LEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAAL 155
+DFL L+E + + K D+ GG+ AER R V + D D +A
Sbjct: 40 TDFLN---LREQTILNNLINKYDDLYVHYFGGFGNAERVRGIVAPDYFVPQDSDFGIAMY 96
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
I F HG LGS+ G+G+ R++ GDII
Sbjct: 97 EIRYPEKFANLHHGQILGSLTGSGVERDRFGDII 130
>gi|372325203|ref|ZP_09519792.1| hypothetical protein OKIT_1327 [Oenococcus kitaharae DSM 17330]
gi|366984011|gb|EHN59410.1| hypothetical protein OKIT_1327 [Oenococcus kitaharae DSM 17330]
Length = 257
Score = 43.1 bits (100), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 95 REVLHSDFLTPPVLKESMMALEKLADVKA---VAQGGYPQAERCRLSVGHPEALTSDPDI 151
R FLT + + L LA A V GGYPQAE R +G + +D I
Sbjct: 27 RAAFKDSFLTVFLNPREQLLLAGLAKQDALPIVFSGGYPQAENKRALIGAEDG-KADFQI 85
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
A L + + H LGS+L GIA ++IGD+I
Sbjct: 86 -AVLQLDYAVKYIHLHHSTILGSLLHQGIAYDRIGDVI 122
>gi|228916535|ref|ZP_04080101.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228935213|ref|ZP_04098039.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228824378|gb|EEM70184.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228843114|gb|EEM88196.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 241
Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
++A+ +V +DFL P + M + + D+ G +AER R ++ +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKR-ALIYPDYLVVN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 111
>gi|229092943|ref|ZP_04224076.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-42]
gi|229123411|ref|ZP_04252615.1| RNA-binding S4 domain protein [Bacillus cereus 95/8201]
gi|229186138|ref|ZP_04313307.1| RNA-binding S4 domain protein [Bacillus cereus BGSC 6E1]
gi|228597314|gb|EEK54965.1| RNA-binding S4 domain protein [Bacillus cereus BGSC 6E1]
gi|228660187|gb|EEL15823.1| RNA-binding S4 domain protein [Bacillus cereus 95/8201]
gi|228690447|gb|EEL44231.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-42]
Length = 241
Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
++A+ +V +DFL P + M + + D+ G +AER R ++ +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKR-ALIYPDYLVVN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 111
>gi|317472791|ref|ZP_07932102.1| S4 domain-containing protein [Anaerostipes sp. 3_2_56FAA]
gi|316899710|gb|EFV21713.1| S4 domain-containing protein [Anaerostipes sp. 3_2_56FAA]
Length = 250
Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 24/135 (17%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMAL-----EKLADVKAVAQGGYPQAERCR 136
K + E+A+ A ++S + P L E +L ++L+ A GG+ +RC
Sbjct: 8 KRLEELAQTA-----FMNSVYTHTPFLSEREQSLFHEMRQELSFADASLYGGHEDYDRCI 62
Query: 137 LSVGHPEALTSDPDI-VAALSITGNFG--FQPCSHGDFLGSILGTGIAREKIGDIILQN- 192
+ G E + +I +A I+ F + +H D+LG+++ GI R +IGDI++ +
Sbjct: 63 VVFGSKEMFGYEGEIPLACAKISPLFKKFAETLTHRDYLGALMNLGIERNQIGDILISDG 122
Query: 193 ----------KGFLC 197
GFLC
Sbjct: 123 EAYVFCFRHMAGFLC 137
>gi|228928946|ref|ZP_04091978.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228947617|ref|ZP_04109907.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228812137|gb|EEM58468.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228830753|gb|EEM76358.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 241
Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
++A+ +V +DFL P + M + + D+ G +AER R ++ +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKR-ALIYPDYLVVN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 111
>gi|312127591|ref|YP_003992465.1| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
hydrothermalis 108]
gi|311777610|gb|ADQ07096.1| RNA-binding S4 domain protein [Caldicellulosiruptor hydrothermalis
108]
Length = 260
Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 99 HSDFLTPPVLKESMMALEKLAD-VKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSI 157
+SDFL+P +K ++ L K + + + GGY +ER L++ + ++ +
Sbjct: 33 YSDFLSPFAIKYAVEVLLKNQNHILHRSWGGYKGSERNILALFSSDFEEYAENLTYPIQT 92
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFLC 197
SH LGS +G G+ R+KIGDI+++ L
Sbjct: 93 ILIEAKNNLSHRQILGSFIGNGLKRDKIGDILVKENSALV 132
>gi|229019100|ref|ZP_04175935.1| RNA-binding S4 domain protein [Bacillus cereus AH1273]
gi|229025344|ref|ZP_04181762.1| RNA-binding S4 domain protein [Bacillus cereus AH1272]
gi|228735929|gb|EEL86506.1| RNA-binding S4 domain protein [Bacillus cereus AH1272]
gi|228742200|gb|EEL92365.1| RNA-binding S4 domain protein [Bacillus cereus AH1273]
Length = 241
Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
++A+ +V +DFL P + M + + +V G P++ER R + +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVSMVIGQ-GEVAVRFDGAMPESERKRALI-YPDYLELN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 66 EEEFQVEVLEIDYPSKFYTLEHRQILGAFMSLGLTREKCGDILLQE 111
>gi|420161635|ref|ZP_14668399.1| ribosomal protein S4e [Weissella koreensis KCTC 3621]
gi|420161741|ref|ZP_14668503.1| ribosomal protein S4e [Weissella koreensis KCTC 3621]
gi|394744748|gb|EJF33667.1| ribosomal protein S4e [Weissella koreensis KCTC 3621]
gi|394745173|gb|EJF34069.1| ribosomal protein S4e [Weissella koreensis KCTC 3621]
Length = 263
Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 87 MARRASSRREVLHSDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCR--LSVG 140
+ R+A + +DFL P LE L ++K GGY AE R L
Sbjct: 23 LLRQAHDEYRPILTDFLNP----RQRYILETLINGDDEIKVNFWGGYEDAESQRGLLVPS 78
Query: 141 HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ + +D D+ + I F H D LG+++ +G+ R +IGDII
Sbjct: 79 YYDWNINDFDL-KVIQINYPIKFAELHHSDILGALINSGLQRNRIGDII 126
>gi|347750593|ref|YP_004858158.1| RNA-binding S4 domain-containing protein [Bacillus coagulans 36D1]
gi|347583111|gb|AEO99377.1| RNA-binding S4 domain protein [Bacillus coagulans 36D1]
Length = 258
Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
+DFL P + + + V A GGY ++ER R+ + P+ + D D +A +
Sbjct: 35 TDFLDPRMQRIVNTVIGNHGAVSVRAFGGYRESERKRMLL-FPDYFSPDEDDFHLALFEV 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
F H LGS++ G+ REK GDI++
Sbjct: 94 HYPAKFVSFEHKHVLGSLMALGLKREKFGDILI 126
>gi|163790530|ref|ZP_02184959.1| S4 domain protein [Carnobacterium sp. AT7]
gi|159874133|gb|EDP68208.1| S4 domain protein [Carnobacterium sp. AT7]
Length = 260
Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
++FL P L + K +D+ + GGY AER R + D V I
Sbjct: 36 TNFLDPRQLHIVKTIVGKNSDITIHSFGGYEAAERVRAFICPAYFTPKQEDFEVTICEIR 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG++L TG+ R+ GDII
Sbjct: 96 YPTKFASLSHGKVLGTLLSTGLKRDYFGDII 126
>gi|386737720|ref|YP_006210901.1| S4 domain-containing protein [Bacillus anthracis str. H9401]
gi|384387572|gb|AFH85233.1| S4 domain protein [Bacillus anthracis str. H9401]
Length = 241
Score = 42.7 bits (99), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 89 RRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD 148
++A+ +V +DFL P + M + + D+ G +AER R + +P+ L +
Sbjct: 8 KQAAEYHQVKLTDFLDPRQQQIVTMVIGQ-GDIAVQFDGATSRAERKRALI-YPDYLVVN 65
Query: 149 PD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 66 EEEFQVEGLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 111
>gi|328957133|ref|YP_004374519.1| cell shape determination protein [Carnobacterium sp. 17-4]
gi|328673457|gb|AEB29503.1| factor involved in shape determination, RNA-binding fold protein
[Carnobacterium sp. 17-4]
Length = 260
Score = 42.7 bits (99), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
++FL P L + K +++ + GGY AER R + P T D + I
Sbjct: 36 TNFLDPRQLHIVKTIVGKNSEITIHSFGGYEAAERVRAFIC-PSYFTPKQDDFGITICEI 94
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
F SHG LG++L TG+ R+ GDII
Sbjct: 95 RYPIKFASLSHGKVLGTLLSTGLKRDYFGDII 126
>gi|229086462|ref|ZP_04218634.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-44]
gi|228696779|gb|EEL49592.1| RNA-binding S4 domain protein [Bacillus cereus Rock3-44]
Length = 257
Score = 42.7 bits (99), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V LE + A +V +DFL P + + D G P+AER R ++
Sbjct: 15 VDKALEWKQMAEEYHQVKLTDFLDPRQQQIVATIIGNQGDAILKFYGVAPKAERKR-ALI 73
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P L + + + L I F H LGS + G+ REK GDI+LQ
Sbjct: 74 YPNYLDLNEEEFQIEVLEIDYPSKFYSLEHRQILGSFMSLGLTREKCGDILLQE 127
>gi|81428368|ref|YP_395368.1| hypothetical protein LSA0754 [Lactobacillus sakei subsp. sakei 23K]
gi|78610010|emb|CAI55058.1| Hypothetical protein LCA_0754 [Lactobacillus sakei subsp. sakei
23K]
Length = 262
Score = 42.7 bits (99), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +L+ +A++ + +DFL P + + ++K GGY AER R +
Sbjct: 19 VAQVLDWIEQATTEYRAILTDFLDPRQAYILQTLIGEKGELKYHFSGGYNAAERQRALIA 78
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ D + I F SHG LG+++ GI R GDI+
Sbjct: 79 PTYFEPEEADFEIQLFEIRYPIKFAQLSHGKILGTLVNAGIDRNVFGDIM 128
>gi|410657330|ref|YP_006909701.1| hypothetical protein DHBDCA_p687 [Dehalobacter sp. DCA]
gi|410660368|ref|YP_006912739.1| hypothetical protein DCF50_p747 [Dehalobacter sp. CF]
gi|409019685|gb|AFV01716.1| hypothetical protein DHBDCA_p687 [Dehalobacter sp. DCA]
gi|409022724|gb|AFV04754.1| hypothetical protein DCF50_p747 [Dehalobacter sp. CF]
Length = 267
Score = 42.7 bits (99), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 127 GGYPQAERCRL----SVGHPEALTSDPDIVAALSITGNF-GFQPCSHGDFLGSILGTGIA 181
GGY AER L PE + D + I + SH DFLGS++G GI
Sbjct: 67 GGYEGAERTVLVFLPDYLEPEQVIQDDEYCPLAFIRAEYPADSGLSHRDFLGSLMGAGIK 126
Query: 182 REKIGDIIL 190
RE +GDI++
Sbjct: 127 RETVGDILV 135
>gi|424827312|ref|ZP_18252121.1| hypothetical protein IYC_04578 [Clostridium sporogenes PA 3679]
gi|365980235|gb|EHN16271.1| hypothetical protein IYC_04578 [Clostridium sporogenes PA 3679]
Length = 256
Score = 42.7 bits (99), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 74 DKNAIEEVKHILEMARRA----SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGY 129
+K IE+ +L++ +A + +++ S F T + K S L ++K G +
Sbjct: 8 NKVNIEDKSLLLDIYNKAILAEKTGKQLFSSYFCTNNICKVSC-ELAHFLNLKIDIFGVF 66
Query: 130 PQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
AER +G T D IV + I N F H DFLG++ GI REK+GD++
Sbjct: 67 KDAER--QIIGFNVYDTKDFPIVL-VKIDYNSKFVNLEHKDFLGALTSLGIKREKMGDLV 123
Query: 190 LQ 191
L+
Sbjct: 124 LK 125
>gi|334882317|emb|CCB83314.1| putative cell division protein [Lactobacillus pentosus MP-10]
gi|339639144|emb|CCC18372.1| putative cell division protein [Lactobacillus pentosus IG1]
Length = 261
Score = 42.7 bits (99), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 66 DDLLKGVGDKNA--IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
D+L + D A IE+V L R+ + + + + FL P + + +L DV+
Sbjct: 3 DNLKQHFRDSEAPFIEQVTGWL---RQVADQYRPILTAFLNPRQVYIAQTLANQLDDVRM 59
Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
A GG+ AE R+ P D + +I F HG LG++ G+ R
Sbjct: 60 RAYGGFEGAELQRILFYPPYYEPEAADFQITLFNIVYPVKFATLKHGQILGTLANAGVER 119
Query: 183 EKIGDIIL--QNKGFLCSGCL 201
+ GDII ++ F+C +
Sbjct: 120 DVFGDIITDGEHWQFVCESEM 140
>gi|383753717|ref|YP_005432620.1| hypothetical protein SELR_08890 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365769|dbj|BAL82597.1| hypothetical protein SELR_08890 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 264
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPE-ALTSDPDIVAALSIT 158
S FL P + + +++ GGY AER R H + A T + +
Sbjct: 41 SGFLDPFGQEIAETVAANYGNIRVDFAGGYQGAERARAIFIHEDFAGTPTSFGIDCIEAK 100
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
N F SH D LG+++G GI R+ IGD+++ N
Sbjct: 101 WNGQFARLSHRDVLGALMGQGIERDTIGDLLVTN 134
>gi|339624591|ref|ZP_08660380.1| hypothetical protein FfruK3_04010 [Fructobacillus fructosus KCTC
3544]
Length = 264
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 11/134 (8%)
Query: 59 QAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKL 118
QAV +FDD + V +L+ +AS +++ + FL P + +
Sbjct: 5 QAVAQHFDDEERAF--------VAQVLDWLTQASQDYQLVLTHFLNPRERHIVSIIVGDR 56
Query: 119 ADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFG--FQPCSHGDFLGSIL 176
D++ + G + +AE+ RL + PE L + F F H D LG++L
Sbjct: 57 TDIQVRSYGIFDRAEKKRLVIA-PEFFEVGRQDFEELLLQIRFAKKFINLRHKDLLGALL 115
Query: 177 GTGIAREKIGDIIL 190
G+ R IGDI++
Sbjct: 116 AAGVNRSVIGDIVV 129
>gi|170760274|ref|YP_001786891.1| hypothetical protein CLK_0949 [Clostridium botulinum A3 str. Loch
Maree]
gi|169407263|gb|ACA55674.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
Maree]
Length = 256
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 9/128 (7%)
Query: 74 DKNAIEEVKHILEMARRA----SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGY 129
+K IE+ +L++ +A + +++ S F T + K S L ++K G +
Sbjct: 8 NKVNIEDKSLLLDIYNKAVLAEKTGKQLFSSYFCTNNICKASC-ELAHFLNLKIDIFGVF 66
Query: 130 PQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
AER +G D +V A I+ N F H DFLG++ GI REK+GD++
Sbjct: 67 KDAER--QIIGFNVYDIEDFPVVLA-KISYNSKFVNLEHKDFLGALTSLGIKREKMGDLV 123
Query: 190 L-QNKGFL 196
L QN ++
Sbjct: 124 LKQNNCYV 131
>gi|19703517|ref|NP_603079.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|19713607|gb|AAL94378.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 241
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
+E++++ +++A + + +++S+ P S + K + +K +G + E+ L
Sbjct: 5 LEKIENYIKLAEKTDT---IIYSNQFFPI----SQLNNLKYSGLKFSFKGLNEECEKKLL 57
Query: 138 SVGHPEALTSD----PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
+V +PE T D P V I F H +LG+IL GI RE +GD+I++N
Sbjct: 58 AV-YPECFTEDYLYFP--VKYFKIIKKSKFISLEHKHYLGNILSLGIKREILGDLIVKND 114
Query: 194 GFLCSGCL 201
C G +
Sbjct: 115 E--CYGII 120
>gi|153810900|ref|ZP_01963568.1| hypothetical protein RUMOBE_01284 [Ruminococcus obeum ATCC 29174]
gi|149833296|gb|EDM88378.1| S4 domain protein [Ruminococcus obeum ATCC 29174]
Length = 206
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 127 GGYPQAERCRLSVGHPEAL----TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GGY QAER ++ HP+AL + A + F + +H DFLG++L GI R
Sbjct: 10 GGYEQAER-QMVAFHPDALLFPWKYPIKCLKAEPLAAKFS-EDLTHRDFLGAVLNLGIER 67
Query: 183 EKIGDIILQN 192
IGDI++Q
Sbjct: 68 AVIGDILVQK 77
>gi|254556999|ref|YP_003063416.1| cell division protein () [Lactobacillus plantarum JDM1]
gi|300768837|ref|ZP_07078731.1| S4 domain-containing protein YlmH [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308180991|ref|YP_003925119.1| cell division protein () [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380032932|ref|YP_004889923.1| cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus plantarum WCFS1]
gi|418275728|ref|ZP_12891051.1| cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus plantarum subsp. plantarum NC8]
gi|448821702|ref|YP_007414864.1| Cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus plantarum ZJ316]
gi|254045926|gb|ACT62719.1| cell division protein (putative) [Lactobacillus plantarum JDM1]
gi|300493570|gb|EFK28744.1| S4 domain-containing protein YlmH [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308046482|gb|ADN99025.1| cell division protein (putative) [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342242175|emb|CCC79409.1| cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus plantarum WCFS1]
gi|376009279|gb|EHS82608.1| cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus plantarum subsp. plantarum NC8]
gi|448275199|gb|AGE39718.1| Cell division protein, RNA-binding S4 domain-containing protein
[Lactobacillus plantarum ZJ316]
Length = 261
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 66 DDLLKGVGDKNA--IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
D+L + D A IE+V L R+ + + + + FL P + + + +L DV+
Sbjct: 3 DNLKQHFRDSEAPFIEQVTGWL---RQVADQYRPILTAFLNPRQIYIAQTLVNQLDDVRM 59
Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTG 179
A GG+ AE R+ + +P + +P++ + +I F HG LG++ G
Sbjct: 60 RASGGFEGAELQRI-LFYP--VYYEPEVADFQITLFNIVYPVKFATLKHGQILGTLANAG 116
Query: 180 IAREKIGDIILQNKG--FLCS 198
+ R+ GDI+ F+C
Sbjct: 117 VERDVFGDIVTDGTTWQFVCE 137
>gi|167745612|ref|ZP_02417739.1| hypothetical protein ANACAC_00304 [Anaerostipes caccae DSM 14662]
gi|167654924|gb|EDR99053.1| S4 domain protein [Anaerostipes caccae DSM 14662]
Length = 250
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMAL-----EKLADVKAVAQGGYPQAERCR 136
K + E+A+ A ++S + P L E +L ++L+ A GG+ +RC
Sbjct: 8 KRLEELAQTA-----FMNSVYTHTPFLSEREQSLFHEMRQELSFADASLYGGHEDYDRCI 62
Query: 137 LSVGHPEALTSDPDI-VAALSITGNFG--FQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+ G E + +I +A I+ F + +H D+LG+++ GI R +IGDI++ +
Sbjct: 63 VVFGSKEMFGYEGEIPLACAKISPLFKKFAETLTHRDYLGALMNLGIERNQIGDILISD 121
>gi|416361854|ref|ZP_11682544.1| YlmH protein, putative, partial [Clostridium botulinum C str.
Stockholm]
gi|338194329|gb|EGO86807.1| YlmH protein, putative [Clostridium botulinum C str. Stockholm]
Length = 234
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 19/158 (12%)
Query: 41 FTFPTSLRHTASGIRHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHS 100
F + H +G+ L + K F D D N I + + + R ++ + +
Sbjct: 9 FFINSYYIHAWNGL--LFKLNKKQFIDYF-NYEDNNLISNIYDKILLHERVNN--PIYLN 63
Query: 101 DFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-------VA 153
+F +P + K+ ++ L K G + +++R +S+ SD D V
Sbjct: 64 EFYSPNIWKK-LLDLTGKIGCKIGTYGIFEESDRRFISI------LSDYDDYEFYNYPVK 116
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
L+I F H DFLG+++ GI REK GD+I+
Sbjct: 117 LLNIINMSAFSKLKHSDFLGALMSLGIKREKFGDLIVD 154
>gi|169351196|ref|ZP_02868134.1| hypothetical protein CLOSPI_01975 [Clostridium spiroforme DSM 1552]
gi|169292258|gb|EDS74391.1| S4 domain protein [Clostridium spiroforme DSM 1552]
Length = 252
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
VK ILE +A R+ ++ + FL P + K ++ + GG +E R+ +
Sbjct: 12 VKKILEFKDQALDRQRIVLTKFLNPYHQSIVHSVIGKSDELIVLENGGLINSETKRMIIA 71
Query: 141 --HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
+ + D +IV + IT F +H D LG+++ G+ RE GDI
Sbjct: 72 PAYYQIEQDDFEIVL-VKITYAKPFGKLTHRDILGALMSLGVKRELFGDI 120
>gi|33863700|ref|NP_895260.1| hypothetical protein PMT1433 [Prochlorococcus marinus str. MIT
9313]
gi|33635283|emb|CAE21608.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 263
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LLKG D +E +L A + S F++ P+ +E++ L D+ A
Sbjct: 7 ELLKGCLDPQGMEA---LLVQADTVLRTWQPSWSAFVSAPLREEALHRFSTLTDLHWHAD 63
Query: 127 GGYPQAERCRL----SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAR 182
GG+P AER RL S H S + L + GNF F S D ++
Sbjct: 64 GGHPGAERQRLCCWRSEDHHHPTPSQAAPIHGLLLHGNFLFDSPSPTDLRQALEAIDAQP 123
Query: 183 EKIGDIILQ 191
E++GD+ ++
Sbjct: 124 EQLGDLWIR 132
>gi|237794806|ref|YP_002862358.1| hypothetical protein CLJ_B1570 [Clostridium botulinum Ba4 str. 657]
gi|229261844|gb|ACQ52877.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
Length = 256
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 9/128 (7%)
Query: 74 DKNAIEEVKHILEMARRA----SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGY 129
+K IE+ +L++ +A + +++ S F T + K S L ++K G +
Sbjct: 8 NKVNIEDKSLLLDIYNKAILAEKTGKQLFSSYFCTNNICKASC-ELAHFLNLKIDIAGVF 66
Query: 130 PQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
AER +G D +V A I+ N F H DFLG++ GI REK+GD++
Sbjct: 67 KDAER--QIIGFNVYDIEDFPVVLA-KISYNSKFVNLEHKDFLGALTFLGIKREKMGDLV 123
Query: 190 L-QNKGFL 196
L QN ++
Sbjct: 124 LKQNNCYV 131
>gi|325288681|ref|YP_004264862.1| RNA-binding S4 domain-containing protein [Syntrophobotulus
glycolicus DSM 8271]
gi|324964082|gb|ADY54861.1| RNA-binding S4 domain protein [Syntrophobotulus glycolicus DSM
8271]
Length = 265
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 20/130 (15%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
++L V DK E K+ILE + + R + L L + A + +
Sbjct: 18 NMLARVLDKLEAAESKNILENTKFLNEREQDLAERMLP------------ECAQFRYLFH 65
Query: 127 GGYPQAERCRL----SVGHPE-ALTSDPDIVAALSITGNF-GFQPCSHGDFLGSILGTGI 180
GGY A R L +PE A + + +A I + SH DFLGS+LG GI
Sbjct: 66 GGYESASRKVLVFFPDYMNPEQAFQGEENCLAC--IRAEYPADNELSHRDFLGSLLGCGI 123
Query: 181 AREKIGDIIL 190
RE IGDI++
Sbjct: 124 KREAIGDILV 133
>gi|332638197|ref|ZP_08417060.1| RNA-binding S4 domain-containing protein [Weissella cibaria KACC
11862]
Length = 261
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 87 MARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG--HPEA 144
+ R+A + ++FL P + + D+K +GGY AE R + + +
Sbjct: 23 LIRQALDEYRPVLTNFLNPRQRYIIETLVNQHDDLKWQHEGGYADAESARTVIAPAYYDI 82
Query: 145 LTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
SD ++ A ++I F H LG+++ GI R+ IGDII +G
Sbjct: 83 QQSDFEL-AVIAINYPQKFAELHHSTILGTLMNNGITRDSIGDIISGEEG 131
>gi|319892185|ref|YP_004149060.1| hypothetical protein SPSINT_0896 [Staphylococcus pseudintermedius
HKU10-03]
gi|317161881|gb|ADV05424.1| hypothetical protein, contains S4- like RNA binding domain protein
[Staphylococcus pseudintermedius HKU10-03]
Length = 256
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E++ ++L+ R+A ++ + + FL P + + D+ GG AERCR
Sbjct: 13 EQIDYLLDKVRQAETQYAPVLTYFLDPRGQYMLEVIVGSFNDLHVSFDGG-RDAERCRAV 71
Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK-GFL 196
+ S D +A + I F H LG+++ GI RE++GDII+ + F+
Sbjct: 72 IAPSYYEPSRDDFELALIEIDYPTKFVTLQHQHVLGTLMSLGIEREQVGDIIVAERIQFV 131
Query: 197 CSGCLQ 202
+ L+
Sbjct: 132 LTKQLE 137
>gi|291550387|emb|CBL26649.1| Uncharacterized conserved protein, contains S4-like domain
[Ruminococcus torques L2-14]
Length = 266
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 22/123 (17%)
Query: 85 LEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ----GGYPQAERCRLSVG 140
+E++R A R V +SDFL L L K ++ GGY AER +++
Sbjct: 18 IELSRIAFEREIVTYSDFLNL----NDQNILHTLPKNKLYSRYVLFGGYDMAER-QMAAF 72
Query: 141 HPEALT-----SD--------PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGD 187
PEAL+ SD P + + +H DFLGSIL GI R K GD
Sbjct: 73 IPEALSLRYGVSDITPKEIDYPFCAVKIEPKNKRFSEDLTHRDFLGSILNLGIDRSKTGD 132
Query: 188 IIL 190
I++
Sbjct: 133 ILV 135
>gi|317131685|ref|YP_004090999.1| RNA-binding S4 domain-containing protein [Ethanoligenens harbinense
YUAN-3]
gi|315469664|gb|ADU26268.1| RNA-binding S4 domain protein [Ethanoligenens harbinense YUAN-3]
Length = 248
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 117 KLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSIL 176
K AD + GGY AER L V P+ D ++ + +H DFLG++L
Sbjct: 46 KHADASFLLWGGYADAERRMLGV-FPQEEVPDGAAFPITAVQIIWKGAELNHRDFLGALL 104
Query: 177 GTGIAREKIGDIILQNK 193
G+ REK+GD+++++
Sbjct: 105 SLGLKREKVGDLVVRSN 121
>gi|153953820|ref|YP_001394585.1| hypothetical protein CKL_1195 [Clostridium kluyveri DSM 555]
gi|219854436|ref|YP_002471558.1| hypothetical protein CKR_1093 [Clostridium kluyveri NBRC 12016]
gi|146346701|gb|EDK33237.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219568160|dbj|BAH06144.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 258
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 95 REVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAA 154
+ + S+F PP L +++ + + + G + AER L E L P V
Sbjct: 33 KNIFTSEFY-PPNLWKTLEDFKGQVGINVYSHGIFENAERKILVFSQSEVLDY-P--VRL 88
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
+ I + F H D+LG+++ GI R K GD+I++
Sbjct: 89 MKIKCSSKFVSLQHKDYLGALMALGIKRGKFGDLIVK 125
>gi|433446185|ref|ZP_20410244.1| S4 domain protein [Anoxybacillus flavithermus TNO-09.006]
gi|432000481|gb|ELK21375.1| S4 domain protein [Anoxybacillus flavithermus TNO-09.006]
Length = 257
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAAL-SIT 158
+DFLTP + + DV GG ER R + P ++ D +L SI
Sbjct: 34 TDFLTPREQQIVRSIVGHHDDVHVAFFGGSSSVERKRALLYPPYMQPNEEDFQLSLFSIR 93
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
F H D LG++L G+ REK GDII+
Sbjct: 94 YPKKFVTLGHRDVLGALLSLGVKREKFGDIII 125
>gi|226948804|ref|YP_002803895.1| hypothetical protein CLM_1705 [Clostridium botulinum A2 str. Kyoto]
gi|226841884|gb|ACO84550.1| conserved hypothetical protein [Clostridium botulinum A2 str.
Kyoto]
Length = 256
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 74 DKNAIEEVKHILEMARRA----SSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGY 129
+K IE+ +L++ +A + +++ S F T + K S L ++K G +
Sbjct: 8 NKVNIEDKSLLLDIYNKAILAEKTGKQLFSSYFCTNNICKASC-ELAHFLNLKIDIAGVF 66
Query: 130 PQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
AE+ +G D +V A I+ N F H DFLG++ GI REK+GD++
Sbjct: 67 KDAEK--QIIGFNVYDIEDFPVVLA-KISYNSKFVNLEHKDFLGALTSLGIKREKMGDLV 123
Query: 190 LQ 191
L+
Sbjct: 124 LK 125
>gi|313114069|ref|ZP_07799621.1| S4 domain protein [Faecalibacterium cf. prausnitzii KLE1255]
gi|310623478|gb|EFQ06881.1| S4 domain protein [Faecalibacterium cf. prausnitzii KLE1255]
Length = 272
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA-QGGYPQAERCRLSV 139
++HI ++A A SR +S FL+ + AL + + +GG+ AER L +
Sbjct: 27 MRHIEDLAHTAFSRDIARYSAFLSDREQDLARAALGRAGVQEGFRFEGGWLNAERRVLCI 86
Query: 140 GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ P L G +H D+LGS++G + RE +GDI+L
Sbjct: 87 EPEYSCGEAPICCVRLQCRAQAGAALPAHKDYLGSLMGLELRREALGDIVL 137
>gi|336113714|ref|YP_004568481.1| RNA-binding S4 domain-containing protein [Bacillus coagulans 2-6]
gi|335367144|gb|AEH53095.1| RNA-binding S4 domain protein [Bacillus coagulans 2-6]
Length = 258
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAALSI 157
+DFL P + + V A GGY ++ER R+ + P+ + D D +A +
Sbjct: 35 TDFLDPRMQQIVNTVTGNHGAVSVRAFGGYKESERKRI-LFFPDYFSPDEDDFHLALFEV 93
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
F H LGS++ G+ REK GDI++
Sbjct: 94 HYPAKFVSFEHKHVLGSLMALGLKREKFGDILI 126
>gi|404482191|ref|ZP_11017418.1| hypothetical protein HMPREF1135_00478 [Clostridiales bacterium
OBRC5-5]
gi|404344352|gb|EJZ70709.1| hypothetical protein HMPREF1135_00478 [Clostridiales bacterium
OBRC5-5]
Length = 249
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 85 LEMARRASSRREVLHSDFLT--PPVLKESMMALEKLADVKAVAQGGYPQAER---CRLSV 139
L++AR A + V +S FL + E++ + L +++ V GGY +AER C
Sbjct: 13 LDLARNAYFKNIVTYSMFLNLNEQAIFETIQ--KDLPNIRYVMFGGYSEAERKIVCFYCD 70
Query: 140 GHPEALTSDPDIVAALSIT-GNFGF-QPCSHGDFLGSILGTGIAREKIGDI 188
PE D++ + ++ N F +H DFLG+++ GI R +GDI
Sbjct: 71 NIPEF-----DMLEYIKVSPVNKKFADELTHRDFLGALMNLGIERRMVGDI 116
>gi|375088332|ref|ZP_09734672.1| hypothetical protein HMPREF9703_00754 [Dolosigranulum pigrum ATCC
51524]
gi|374562370|gb|EHR33700.1| hypothetical protein HMPREF9703_00754 [Dolosigranulum pigrum ATCC
51524]
Length = 260
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 127 GGYPQAERCRLSV--GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GG ER R + + E + DI A I+ F SH D LG+ILGTGI R+K
Sbjct: 62 GGTTGTERQRALIKPSYIEDVKGHYDI-ALCEISYPEKFSQLSHRDILGAILGTGIDRKK 120
Query: 185 IGDIILQNKG 194
+GDII Q+ G
Sbjct: 121 LGDII-QDDG 129
>gi|375008102|ref|YP_004981735.1| hypothetical protein [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359286951|gb|AEV18635.1| hypothetical protein GTCCBUS3UF5_13210 [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 257
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +LE S + +DFL P + DV+A GG P ER R+ +
Sbjct: 15 IDQVLEWKEMVSRQYAPKLTDFLDPREQQIVQSIAGGAEDVRAFFFGGAPFVERKRVFLA 74
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
P + D + ++ F H D LG+++ G+ R K GDI++++
Sbjct: 75 PPYIDPEEEDYGIVLFAVRYPAKFVSLEHRDVLGALMSLGLRRGKFGDILIRD 127
>gi|429765555|ref|ZP_19297840.1| S4 domain protein [Clostridium celatum DSM 1785]
gi|429186006|gb|EKY26969.1| S4 domain protein [Clostridium celatum DSM 1785]
Length = 255
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 66 DDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA 125
DD+LK K IE+V + E A + + F P + + + A
Sbjct: 5 DDILKNFS-KEDIEDVIKVYECMNIAYLKDIPTFTKFFCKPNIWMYFIKEFNSNNFSVKA 63
Query: 126 QGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
+ G + +R LS + + S P L I+ + F +H D+LG+++ G+ R+K+
Sbjct: 64 ECGLDEGDRKILSFNN---IYSIPYPYKILKISNSSKFNKLTHRDYLGALMALGLERDKL 120
Query: 186 GDI 188
GD+
Sbjct: 121 GDL 123
>gi|300854254|ref|YP_003779238.1| RNA-binding protein [Clostridium ljungdahlii DSM 13528]
gi|300434369|gb|ADK14136.1| putative RNA binding protein [Clostridium ljungdahlii DSM 13528]
Length = 257
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
D++ I + + +A++ ++ V S F TP V ++ L+K + + G + AE
Sbjct: 14 DESEILPIYDKISLAKKTNN--TVYTSTFYTPNVW-NTLENLKKEIGLNICSCGIFEDAE 70
Query: 134 RCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
R +L + + P + + I F H D+LG+++ G+ REK GD+IL+
Sbjct: 71 R-KLIAFSKFDIRNYP--IKLMEIKCKSKFVKLQHKDYLGALMALGLKREKFGDLILK 125
>gi|365839024|ref|ZP_09380275.1| S4 domain protein [Anaeroglobus geminatus F0357]
gi|364565826|gb|EHM43537.1| S4 domain protein [Anaeroglobus geminatus F0357]
Length = 261
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
++++A R S+F++P ++ A + GGY AER +L
Sbjct: 22 RLIDLADSTDKGRPYAVSEFVSPGAVQIGETVSAHAATLVLRVNGGYEGAERVKLCFIRN 81
Query: 143 EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ S + A IT + ++ H D LG+++ GI R + GDII+ G
Sbjct: 82 DYEGSVDFGLTACRITWDARYRLLGHRDVLGALMSLGIDRGRFGDIIMHEDG 133
>gi|138894669|ref|YP_001125122.1| RNA binding protein [Geobacillus thermodenitrificans NG80-2]
gi|196247716|ref|ZP_03146418.1| RNA-binding S4 domain protein [Geobacillus sp. G11MC16]
gi|134266182|gb|ABO66377.1| RNA binding protein [Geobacillus thermodenitrificans NG80-2]
gi|196212500|gb|EDY07257.1| RNA-binding S4 domain protein [Geobacillus sp. G11MC16]
Length = 257
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +LE S + +DFL P + + DV+ GG P AER R +
Sbjct: 15 IDQVLEWKDTVSRQYAPKLTDFLDPREQQIVQSIVGSDEDVRVSFFGGVPFAERKRAFLY 74
Query: 141 HP--EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
P E D DIV ++ F H D LG+++ G+ R K GDI++Q
Sbjct: 75 PPYIEPDEGDYDIVL-FAVRYPDKFISLEHRDVLGALMSLGLRRGKFGDILVQ 126
>gi|407796627|ref|ZP_11143580.1| hypothetical protein MJ3_06973 [Salimicrobium sp. MJ3]
gi|407019143|gb|EKE31862.1| hypothetical protein MJ3_06973 [Salimicrobium sp. MJ3]
Length = 255
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 100 SDFLTPPVLKESMMALEKLADVK-AVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSI 157
+DFL P +E +A L + V G ER R+ + L + D + L
Sbjct: 34 TDFLNP---RERQIATSLLRNTDLQVEFSGEDDEERRRMIIAPEYELIEEEDFQLTLLEA 90
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFL 196
+ F H D LG+ + GI REK+GD+I+++ GF+
Sbjct: 91 SYPAKFVSLEHRDVLGAFMSLGIKREKLGDLIVKD-GFI 128
>gi|373462939|ref|ZP_09554600.1| S4 domain protein [Lactobacillus kisonensis F0435]
gi|371765759|gb|EHO54063.1| S4 domain protein [Lactobacillus kisonensis F0435]
Length = 193
Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ--NKGFLCSGCL 201
+ A I F SHG LGSI+G GI R+ IGDII N F+C +
Sbjct: 20 ITAFQIDYPSKFATLSHGQILGSIMGAGIDRDVIGDIITDGPNWQFMCESEM 71
>gi|159903952|ref|YP_001551296.1| hypothetical protein P9211_14111 [Prochlorococcus marinus str. MIT
9211]
gi|159889128|gb|ABX09342.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT
9211]
Length = 262
Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
DL+K KNA E ++ ++ + +A + L S F+ +++E + + + ++ A
Sbjct: 7 DLIKR--SKNA-ETLERLISLGEKAHKTWQELWSPFVEAQLIEEILKIFDPIHEINCHAD 63
Query: 127 GGYPQAERCRL---SVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIARE 183
GGY AER R+ E ++ + I GNF F DF ++ GI+
Sbjct: 64 GGYLGAERKRILFRRTHEGEKKIFPKPTLSGMQIEGNFLFDKTRIQDFKEALEEKGISPS 123
Query: 184 KIGDI-ILQNKG--FLCS 198
+GDI I+ ++G +C+
Sbjct: 124 DLGDIWIVGDRGAQLICT 141
>gi|226324966|ref|ZP_03800484.1| hypothetical protein COPCOM_02758 [Coprococcus comes ATCC 27758]
gi|225206314|gb|EEG88668.1| S4 domain protein [Coprococcus comes ATCC 27758]
Length = 258
Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ++E++ A R +++SDFL L + V GGY +ER +++
Sbjct: 10 KRLIELSNNAYQRGIIMYSDFLNLNELNILHTTPKDSFPVPYRTFGGYDPSER-QMAAFL 68
Query: 142 PEA--LTSDPDIVAA---LSITGNFGFQP-----CSHGDFLGSILGTGIAREKIGDIILQ 191
P+A + D + + + + I QP SH D+LG++L GI R K GDI++
Sbjct: 69 PDAFYMYMDEESIRSTYPIRILKISPLQPKFAEELSHRDYLGALLNLGITRAKTGDILIH 128
Query: 192 NK 193
+K
Sbjct: 129 DK 130
>gi|116334045|ref|YP_795572.1| cell division protein [Lactobacillus brevis ATCC 367]
gi|116099392|gb|ABJ64541.1| Cell division protein, S4-like domain [Lactobacillus brevis ATCC
367]
Length = 259
Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 100 SDFLTPPVLKESMMA--LEKLADVKAVAQGGYPQAE--RCRLSVGHPEALTSDPDIVAAL 155
++FL P ++ +A L + ADV GGY AE R + E + D ++ A L
Sbjct: 36 TNFLNP---RQVYIATTLAQRADVPVRFNGGYAHAEMQRALFYPDYYEPVAKDFEL-AVL 91
Query: 156 SITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ F H LG++LG GI RE +GDI+
Sbjct: 92 RVDYPVKFATLHHSQILGTLLGAGIEREILGDIL 125
>gi|23098937|ref|NP_692403.1| hypothetical protein OB1482 [Oceanobacillus iheyensis HTE831]
gi|22777165|dbj|BAC13438.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 258
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 100 SDFLTPPVLKESMMAL--EKLADVKAVAQGGYPQAERCRLSVG-HPEALTSDPDIVAALS 156
+DFL P +E + +L E +++ GG ++ER R+ + E +T D + L
Sbjct: 34 TDFLDPRE-QEIVTSLIGEHNEELQVRGFGGSNKSERSRMILAPKYEEITEDMFQIQLLE 92
Query: 157 ITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
F H D +G+ L GI R+K+GDII+++
Sbjct: 93 ANFQPKFVMIEHPDVMGAFLSQGIKRKKLGDIIIED 128
>gi|160945087|ref|ZP_02092313.1| hypothetical protein FAEPRAM212_02606 [Faecalibacterium prausnitzii
M21/2]
gi|158442818|gb|EDP19823.1| S4 domain protein [Faecalibacterium prausnitzii M21/2]
Length = 272
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLS 138
++HI ++A A SR +S FL+ + AL + A V+ + GG+P+AER L
Sbjct: 27 MRHIEDLADAAFSRGIARYSAFLSDREQDLARAALGR-AGVRDGWRFDGGWPEAERRVLC 85
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ + P L G +H D+LGS++G + RE +GDI+L
Sbjct: 86 LEPEYSYGECPVRCVQLQCRALPGAALPAHKDYLGSLMGLALKREALGDILL 137
>gi|346722871|ref|YP_001180686.2| RNA-binding S4 domain-containing protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|345106842|gb|ABP67495.2| RNA-binding S4 domain protein [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 256
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 20/132 (15%)
Query: 74 DKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQ 131
+K I +VK+++E + + +SDFL+P K ++ + K + Q GGY
Sbjct: 8 NKYEILKVKNLIERSYGG-----IEYSDFLSPYAQKYAIDIILKGENPYLFYQIWGGYED 62
Query: 132 AERCRLSVGHPEALTSDP------DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
+ER L++ L DI+ S T SH LG+ +G G+ R+KI
Sbjct: 63 SERKVLALSFDSRLEETDFSHFPIDIILIKSDT------ILSHRQILGTFIGQGLKRDKI 116
Query: 186 GDIIL-QNKGFL 196
GDI++ +NK +
Sbjct: 117 GDILVKENKALV 128
>gi|310778916|ref|YP_003967249.1| RNA-binding S4 domain-containing protein [Ilyobacter polytropus DSM
2926]
gi|309748239|gb|ADO82901.1| RNA-binding S4 domain protein [Ilyobacter polytropus DSM 2926]
Length = 258
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 98 LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV---GHPEALTSDPDIVAA 154
+H+ PP + ++ ++ ++ ++G ++E+ + + + E P A
Sbjct: 35 IHTKIFFPPEVWSTLENMKNSLGIEVESKGVKQESEKRVILIKPLAYGEYFEDYP--FAY 92
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFLCSGCL 201
I G F+ H FL +I+G GI RE +GD+I++ +C G +
Sbjct: 93 FEIRGGSKFKELEHRHFLAAIMGLGIKREMLGDLIVKEG--VCYGVI 137
>gi|429737653|ref|ZP_19271509.1| S4 domain protein [Selenomonas sp. oral taxon 138 str. F0429]
gi|429152016|gb|EKX94853.1| S4 domain protein [Selenomonas sp. oral taxon 138 str. F0429]
Length = 264
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
GGY AER R + H + PD ++ + N F +H D LG+++G GI RE
Sbjct: 68 GGYAGAERQRAMLRHRD-FRGTPDGFGISCVESVWNGQFARLTHRDVLGALMGLGIEREL 126
Query: 185 IGDII 189
IGDI+
Sbjct: 127 IGDIL 131
>gi|295105662|emb|CBL03206.1| Uncharacterized conserved protein, contains S4-like domain
[Faecalibacterium prausnitzii SL3/3]
Length = 272
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ--GGYPQAERCRLS 138
++HI ++A A SR +S FL+ + AL + A V+ + GG+P+AER L
Sbjct: 27 MRHIEDLADAAFSRGIARYSAFLSDREQDLARAALGR-AGVRDGWRFDGGWPEAERRVLC 85
Query: 139 VGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ + P L G +H D+LGS++G + RE +GDI+L
Sbjct: 86 LEPEYSYGECPVRCVQLQCRALPGAALPAHKDYLGSLMGLALKREALGDILL 137
>gi|414083300|ref|YP_006992008.1| S4 domain-containing protein [Carnobacterium maltaromaticum LMA28]
gi|412996884|emb|CCO10693.1| S4 domain protein [Carnobacterium maltaromaticum LMA28]
Length = 259
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 100 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALT--SDPDIVAA 154
+DFL P M +E L D+K GGY AER R+ + P+ T + +
Sbjct: 36 TDFLDP----RQMYIVESLVGKRDLKLYYFGGYEAAERKRVFIC-PDYYTPTQEEFKIDI 90
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
I F SH LG+++ G+ RE GDI+
Sbjct: 91 CEIRYPTKFAKLSHSKILGTLMSVGVKREYFGDIVF 126
>gi|56964109|ref|YP_175840.1| hypothetical protein ABC2344 [Bacillus clausii KSM-K16]
gi|56910352|dbj|BAD64879.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 253
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ HI + +A+ + + FL P + + + + + ++ GG ER R S+
Sbjct: 13 IDHIQTLREQATRYHQEKLTGFLDPRMQEVAKSVIGQDGEIDLQFFGGADGCERKRASI- 71
Query: 141 HPEALTSDP---DIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFLC 197
P L ++P DI + N F +H D LG+++ TG+ RE GDI + + F
Sbjct: 72 RPAYLKNEPIDWDISLFKAAYAN-KFVTLTHRDVLGALMNTGMKRETFGDISVTDNAFYV 130
Query: 198 S 198
+
Sbjct: 131 A 131
>gi|424780486|ref|ZP_18207359.1| hypothetical protein C683_0666 [Catellicoccus marimammalium
M35/04/3]
gi|422842888|gb|EKU27335.1| hypothetical protein C683_0666 [Catellicoccus marimammalium
M35/04/3]
Length = 261
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 102 FLTPPVLKESMMALEKLADVKAVAQGGYPQ---AERCRLSVGHPEALTSDPDIVAALSIT 158
FL P +E + +E LA + V+ Y Q +E+ R+ + +PE + + I
Sbjct: 39 FLNP---REQYL-VENLAHQRGVSVQAYSQFRHSEQKRVLL-YPEYFVPEEEDFETQLIE 93
Query: 159 GNFG--FQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
++ F H + LG++LG GI RE+IGDI L +K
Sbjct: 94 IHYAQKFVELHHREVLGTLLGQGIKREQIGDIHLNDK 130
>gi|406837717|ref|ZP_11097311.1| cell division protein [Lactobacillus vini DSM 20605]
Length = 260
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 120 DVKAVAQGGYPQAERCRLSVGHPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILG 177
VK A G + QAER R + +PE + +A + I F H LG++LG
Sbjct: 54 QVKFCANGLFQQAERRR-GLFYPEYFNPKQEDFQLALMEIKYPVKFAQLEHRQILGTLLG 112
Query: 178 TGIAREKIGDII 189
+G+ R IGDI+
Sbjct: 113 SGLKRSAIGDIL 124
>gi|392531408|ref|ZP_10278545.1| cell shape determination protein [Carnobacterium maltaromaticum
ATCC 35586]
Length = 259
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 100 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALT--SDPDIVAA 154
+DFL P M +E L D+K GGY AER R+ + P+ T + +
Sbjct: 36 TDFLDP----RQMYIVETLVGKRDLKLYYFGGYEAAERKRVFIC-PDYYTPTQEEFKIDI 90
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
I F SH LG+++ G+ RE GDI+
Sbjct: 91 CEIRYPTKFAKLSHSKILGTLMSVGVKREYFGDIVF 126
>gi|228940986|ref|ZP_04103544.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973917|ref|ZP_04134492.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980506|ref|ZP_04140816.1| RNA-binding S4 domain protein [Bacillus thuringiensis Bt407]
gi|384187958|ref|YP_005573854.1| RNA binding protein [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676273|ref|YP_006928644.1| putative RNA-binding protein YlmH [Bacillus thuringiensis Bt407]
gi|452200339|ref|YP_007480420.1| hypothetical protein H175_ch3960 [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779326|gb|EEM27583.1| RNA-binding S4 domain protein [Bacillus thuringiensis Bt407]
gi|228785783|gb|EEM33787.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228818665|gb|EEM64732.1| RNA-binding S4 domain protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326941667|gb|AEA17563.1| RNA binding protein [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175402|gb|AFV19707.1| putative RNA-binding protein YlmH [Bacillus thuringiensis Bt407]
gi|452105732|gb|AGG02672.1| hypothetical protein H175_ch3960 [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 255
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +LE ++ + +V +DFL P + M + + D G P AER R +
Sbjct: 15 VDKVLEW-KQTAEYHQVKLTDFLDPRQQQIVSMVIGQ-GDGAVQFGGATPNAERKRALI- 71
Query: 141 HPEALTSDPD--IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
+P+ L + + V L I F H LG+ + G+ REK GDI+LQ
Sbjct: 72 YPDYLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQE 125
>gi|406664686|ref|ZP_11072461.1| photosystem II S4 domain protein [Bacillus isronensis B3W22]
gi|405387534|gb|EKB46958.1| photosystem II S4 domain protein [Bacillus isronensis B3W22]
Length = 262
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
++ ++ R R +DFL P + ES+ +++ D+ +G + +AER R+
Sbjct: 16 IEQVIGWQREVEDRYAPKLTDFLDPRQRFIVESI--VQQSDDLHVFTEGIFEEAERKRML 73
Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ ++ D +A S+ F H D LG++L G+ R K GDI L
Sbjct: 74 IAPSYYEPAEADFQIAVYSLNYPTKFVQLRHPDVLGALLSIGLDRSKFGDIRL 126
>gi|354807874|ref|ZP_09041326.1| S4 domain protein [Lactobacillus curvatus CRL 705]
gi|354513624|gb|EHE85619.1| S4 domain protein [Lactobacillus curvatus CRL 705]
Length = 262
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V +L+ +A + + FL P + + DV+ GGY AER R +
Sbjct: 19 VAQVLDWIEQAQVEYRPILTAFLDPRQAFILQTLVGEKGDVRYHFNGGYNAAERKRAMIA 78
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+D D + I F SHG LG+++ GI R+ GDI+
Sbjct: 79 PDYFEPTDADFEIQLFEIRYPIKFANLSHGKVLGTLVNAGIDRDVFGDIM 128
>gi|393201812|ref|YP_006463654.1| hypothetical protein SSIL_3085 [Solibacillus silvestris StLB046]
gi|327441143|dbj|BAK17508.1| uncharacterized conserved protein [Solibacillus silvestris StLB046]
Length = 262
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
++ ++ R R +DFL P + ES+ +++ D+ +G + +AER R+
Sbjct: 16 IEQVIGWQREVEDRYAPKLTDFLDPRQRFIVESI--VQQSDDLHVFTEGIFEEAERKRML 73
Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ ++ D +A S+ F H D LG++L G+ R K GDI L
Sbjct: 74 IAPSYYEPAEADFQIAVYSLNYPTKFVQLRHPDVLGALLSIGLDRSKFGDIRL 126
>gi|420143356|ref|ZP_14650857.1| Hypothetical protein Y7C_90763 [Lactococcus garvieae IPLA 31405]
gi|391856875|gb|EIT67411.1| Hypothetical protein Y7C_90763 [Lactococcus garvieae IPLA 31405]
Length = 265
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +L+ R + V+ + FL P + E + +L +++ + Q E ++ +
Sbjct: 18 IDRVLDWMERVENNYSVVTTYFLNPREV-EILESLANKRELQIFSTQDIAQTELTKIIIA 76
Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQNKG 194
PE D D +A L I+ F H LGS LG TGI R +IGDIIL N+G
Sbjct: 77 -PEFYQLDILDFDLALLEISYAQKFYQLKHSQILGSFLGQTGIRRSEIGDIIL-NEG 131
>gi|402297354|ref|ZP_10817126.1| putative RNA-binding S4 domain-containing protein [Bacillus
alcalophilus ATCC 27647]
gi|401727404|gb|EJT00594.1| putative RNA-binding S4 domain-containing protein [Bacillus
alcalophilus ATCC 27647]
Length = 239
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 100 SDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAAL- 155
+DFL P +LK +++ +++ DV+ GG ER R + P + +D + A
Sbjct: 16 TDFLDPREQEILK-TVVGIDE--DVQLSFFGGRGDIERQRAHLA-PSYIVADEETFACFL 71
Query: 156 -SITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
SI F +H D LG+++ G+ REK GDII+
Sbjct: 72 YSIEYPSKFVTLTHRDILGALMSIGLKREKFGDIII 107
>gi|227484957|ref|ZP_03915273.1| ribosomal protein S4e [Anaerococcus lactolyticus ATCC 51172]
gi|227237112|gb|EEI87127.1| ribosomal protein S4e [Anaerococcus lactolyticus ATCC 51172]
Length = 255
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
Query: 69 LKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGG 128
L + DK ++ L + +A +R + S FL P ++++ + +K GG
Sbjct: 7 LDHISDKQKKTNIRKALSILEKAFYKRIEIKSFFL-DPFEQKTIAEIANKNSIKICFLGG 65
Query: 129 YPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
AER + +P+ ++ + F Q SH D LG++L G R IGDI
Sbjct: 66 NVDAERKIFVANYFYEPLYEPNYISVME----FESQDISHPDVLGALLSLGTDRNDIGDI 121
>gi|386319543|ref|YP_006015706.1| RNA-binding S4 domain-containing protein [Staphylococcus
pseudintermedius ED99]
gi|323464714|gb|ADX76867.1| RNA-binding S4 domain protein [Staphylococcus pseudintermedius
ED99]
Length = 256
Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLS 138
E++ ++L+ R+A ++ + + FL P + + D+ GG AERCR
Sbjct: 13 EQIDYLLDKVRQAETQYAPVLTYFLDPRGQYMLEVIVGSFNDLHVSFDGG-RDAERCRAV 71
Query: 139 VGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK-GFL 196
+ S D + + I F H LG+++ GI RE++GDII+ + F+
Sbjct: 72 IAPSYYEPSRDDFELTLIEIDYPTKFVTLQHQHVLGTLMSLGIEREQVGDIIVAERIQFV 131
Query: 197 CSGCLQ 202
+ L+
Sbjct: 132 LTKQLE 137
>gi|342215419|ref|ZP_08708066.1| hypothetical protein HMPREF9130_1891 [Peptoniphilus sp. oral taxon
375 str. F0436]
gi|341586309|gb|EGS29709.1| hypothetical protein HMPREF9130_1891 [Peptoniphilus sp. oral taxon
375 str. F0436]
Length = 134
Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
+ IL+ A + V SDFL P K + + + D+ GG+ +E+ + +
Sbjct: 21 RRILDYVEGALKHKSVYSSDFLNPHEQKLASSLVSQFHDLHFRLDGGFEPSEQKIILIA- 79
Query: 142 PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
P+ + D I G + SH D LGS+L GI R+KIGDI
Sbjct: 80 PDFYNLE-DYSDLQLIQGPWD-GLFSHRDVLGSLLSLGIERKKIGDIF 125
>gi|392971788|ref|ZP_10337181.1| S4 domain-containing protein [Staphylococcus equorum subsp. equorum
Mu2]
gi|392510327|emb|CCI60471.1| S4 domain-containing protein [Staphylococcus equorum subsp. equorum
Mu2]
Length = 259
Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 11/133 (8%)
Query: 75 KNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER 134
K E + +++ RA+ + + + FL P + + D++ GG P AER
Sbjct: 12 KEEHELIDQLMDKCNRANEQYAPILTPFLDPRGQYIMSVIVGSYDDLEVTFFGG-PYAER 70
Query: 135 CRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
R V P+ L + ++ + + ++ F H LG+I+ GI RE++GDII+ +
Sbjct: 71 KRAIVA-PDYLVPEEELFEIVLVEIDYPQKFVTLQHQHILGTIMSLGIEREQLGDIIVDD 129
Query: 193 KGFLCSGCLQYTL 205
+Q+TL
Sbjct: 130 -------SIQFTL 135
>gi|311068062|ref|YP_003972985.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus atrophaeus 1942]
gi|419823957|ref|ZP_14347490.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus atrophaeus C89]
gi|310868579|gb|ADP32054.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus atrophaeus 1942]
gi|388471994|gb|EIM08784.1| factor involved in shape determination, RNA-binding fold protein
[Bacillus atrophaeus C89]
Length = 258
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ---GGYPQAERCRL 137
+ LE R + + +DFL P +E ++A + +V GGY AER R
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVIAASVIGQADSVGLALFGGYDGAERKRA 72
Query: 138 SVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ A + D + A + F H LGS++G G+ R+K GD++
Sbjct: 73 LLYPDYANPEETDFGLQAFEVHYPEKFVSIDHRSLLGSLMGIGLKRQKFGDLVF 126
>gi|167755752|ref|ZP_02427879.1| hypothetical protein CLORAM_01267 [Clostridium ramosum DSM 1402]
gi|237734719|ref|ZP_04565200.1| S4 RNA-binding protein [Mollicutes bacterium D7]
gi|365831383|ref|ZP_09372935.1| hypothetical protein HMPREF1021_01699 [Coprobacillus sp. 3_3_56FAA]
gi|374625045|ref|ZP_09697462.1| hypothetical protein HMPREF0978_00782 [Coprobacillus sp.
8_2_54BFAA]
gi|167704691|gb|EDS19270.1| S4 domain protein [Clostridium ramosum DSM 1402]
gi|229382047|gb|EEO32138.1| S4 RNA-binding protein [Coprobacillus sp. D7]
gi|365261860|gb|EHM91761.1| hypothetical protein HMPREF1021_01699 [Coprobacillus sp. 3_3_56FAA]
gi|373916328|gb|EHQ48076.1| hypothetical protein HMPREF0978_00782 [Coprobacillus sp.
8_2_54BFAA]
Length = 252
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
VK +LE +A ++ ++ + FL P + D+ + GG +E RL +
Sbjct: 12 VKKVLEFKDQALYKQRLVLTKFLNPYHQSIVYSIVGNQNDLIVIEDGGMVDSEMKRLIIA 71
Query: 141 --HPEALTSDPDIV-AALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFLC 197
+ D +IV A +S FG +H D LG+++ G+ RE GDI F
Sbjct: 72 PSFYQIEKEDFEIVLAKISYAKPFG--TLNHRDILGALMSLGVKRELFGDIYEYEDNFYV 129
Query: 198 S 198
+
Sbjct: 130 A 130
>gi|325845150|ref|ZP_08168459.1| S4 domain protein [Turicibacter sp. HGF1]
gi|325488815|gb|EGC91215.1| S4 domain protein [Turicibacter sp. HGF1]
Length = 255
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSD--PDIVAALSI 157
+ FLT + M + + ++V+ +GG+ +AER R ++ +P+ L + V I
Sbjct: 32 TKFLTLREQEIVQMLVNQNSEVRVSFEGGFQKAERKR-AILYPDYLKLNNLSQYVKGYEI 90
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
N H LGS+ I R IGDI++ + G
Sbjct: 91 EYNQKLVTLKHPQILGSLTALNIDRSLIGDIVILSNG 127
>gi|403046887|ref|ZP_10902356.1| S4 domain-containing protein YlmH [Staphylococcus sp. OJ82]
gi|402763583|gb|EJX17676.1| S4 domain-containing protein YlmH [Staphylococcus sp. OJ82]
Length = 259
Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 11/133 (8%)
Query: 75 KNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER 134
K E + +++ RA+ + + + FL P + + D++ GG P AER
Sbjct: 12 KEEHELIDQLMDKCNRANEQYAPILTPFLDPRGQYIMSVIVGSYDDLEVTFFGG-PYAER 70
Query: 135 CRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
R V P+ L + ++ + + ++ F H LG+I+ GI RE++GDII+ +
Sbjct: 71 KRAIVA-PDYLMPEEELFEIVLVEIDYPQKFVTLQHQHILGTIMSLGIEREQLGDIIVDD 129
Query: 193 KGFLCSGCLQYTL 205
+Q+TL
Sbjct: 130 -------SIQFTL 135
>gi|451343653|ref|ZP_21912724.1| hypothetical protein HMPREF9943_00949 [Eggerthia catenaformis OT
569 = DSM 20559]
gi|449337750|gb|EMD16907.1| hypothetical protein HMPREF9943_00949 [Eggerthia catenaformis OT
569 = DSM 20559]
Length = 247
Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V+ IL+ +A + +L + F P ++S+++ + + GG+ AE R+ +
Sbjct: 12 VRKILDYVNQADKGKMIL-TKFFDPH--QQSIVSRVIGNRLSVHSFGGFINAENKRMLIC 68
Query: 141 HPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
H + D ++ L N F H D LG+++ GI RE IGDI
Sbjct: 69 HDYYEIVPDDFHISVLKADYNDSFGKLKHSDVLGALMNLGIKREVIGDI 117
>gi|392394894|ref|YP_006431496.1| hypothetical protein Desde_3421 [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390525972|gb|AFM01703.1| hypothetical protein Desde_3421 [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 265
Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 126 QGGYPQAERCRLSVGH-PEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREK 184
+GG+P +ER R +G + L + P + L T H LGS++G G+ RE
Sbjct: 66 EGGFPDSERVRFLIGEDADVLDNIPSEIRTLRATPVDPRGKLEHRQVLGSLIGLGLKREV 125
Query: 185 IGDI 188
+GDI
Sbjct: 126 VGDI 129
>gi|124022232|ref|YP_001016539.1| S4-like domain-containing protein [Prochlorococcus marinus str. MIT
9303]
gi|123962518|gb|ABM77274.1| Uncharacterized conserved protein, contains S4-like domain
[Prochlorococcus marinus str. MIT 9303]
Length = 295
Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 11/131 (8%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQ 126
+LLKG D +E +L A + S F++ P+ ++++ L D+ A
Sbjct: 39 ELLKGCLDPQGMEA---LLVQADSVLRTWQPSWSAFVSAPLREQALHRFATLTDLHWHAD 95
Query: 127 GGYPQAERCRLSVG------HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGI 180
GG+P AER RL HP + P + L + GNF F S D ++
Sbjct: 96 GGHPGAERQRLCCSRCEDHHHPTPSQAAP--IHGLLLHGNFLFDSPSPTDLRQALEAIDT 153
Query: 181 AREKIGDIILQ 191
E++GD+ ++
Sbjct: 154 RPEQLGDLWIR 164
>gi|56419669|ref|YP_146987.1| hypothetical protein GK1134 [Geobacillus kaustophilus HTA426]
gi|56379511|dbj|BAD75419.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 257
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +LE S + +DFL P + DV+A GG P ER R+ +
Sbjct: 15 IDQVLEWKEMVSRQYAPKLTDFLDPREQQIVQSIAGGAEDVRAFFFGGAPFVERKRVFLA 74
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
P + D + ++ F H D LG+++ G+ R + GDI++++
Sbjct: 75 PPYIDPEEEDYGIVLFAVRYPAKFVSLEHRDVLGALMSLGLRRGEFGDILIRD 127
>gi|313884820|ref|ZP_07818572.1| S4 domain protein [Eremococcus coleocola ACS-139-V-Col8]
gi|312619511|gb|EFR30948.1| S4 domain protein [Eremococcus coleocola ACS-139-V-Col8]
Length = 262
Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 100 SDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VAA 154
S FLTP +++M+ + + DVK GG AER R + +P+ + + A
Sbjct: 38 SPFLTP---RQAMIVSQLVGTNEDVKVAFWGGCEGAERKRALI-YPQYYEVNEASFEIQA 93
Query: 155 LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+I F +HG LG+ TG+ R++ GDII
Sbjct: 94 FNINFPLKFGQLTHGRILGTFTSTGVDRDRTGDII 128
>gi|225567966|ref|ZP_03776991.1| hypothetical protein CLOHYLEM_04039 [Clostridium hylemonae DSM
15053]
gi|225163254|gb|EEG75873.1| hypothetical protein CLOHYLEM_04039 [Clostridium hylemonae DSM
15053]
Length = 251
Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K + E++ A +R V SDFL L + + GGY +ER ++
Sbjct: 10 KRLAELSDLAFTRGIVTFSDFLNLNELNILHTTPKHMFPAHYETYGGYDLSERQMVAF-L 68
Query: 142 PEAL----TSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
P+AL T ++ ++ F + +H D+LG+++ GI R K+GDII
Sbjct: 69 PDALYYEYTYPLSVIEVAPVSRKFA-EELTHRDYLGALMNLGIERSKLGDII 119
>gi|395239332|ref|ZP_10417212.1| S4 domain protein [Lactobacillus gigeriorum CRBIP 24.85]
gi|394476427|emb|CCI87189.1| S4 domain protein [Lactobacillus gigeriorum CRBIP 24.85]
Length = 265
Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 79 EEVKHILEMARRASSRREVLHSDFLTP---PVLKESMMALEKLADVKAVAQGGYPQAERC 135
+E+ ++ + + L +DFL P +L+E ++ E D GGYP AE+
Sbjct: 17 KEIDDLIALYNQVEYHDNDLLTDFLDPGQIHILRE-IIGNEFFID----DFGGYPDAEKR 71
Query: 136 RLSVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
R+ + ++ D + A + F H D LGS+ +GI GDII G
Sbjct: 72 RVYISERDSEIKPEDFQITAFEVEYANKFIQLRHSDILGSLANSGIELGTFGDIIHDESG 131
>gi|350269426|ref|YP_004880734.1| hypothetical protein OBV_10300 [Oscillibacter valericigenes
Sjm18-20]
gi|348594268|dbj|BAK98228.1| hypothetical protein OBV_10300 [Oscillibacter valericigenes
Sjm18-20]
Length = 265
Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 83 HILEMARRASSRREVLHSDFLTPP--VLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+L+ + +R +DFL+P E ++ L + + V GGY AER ++ +
Sbjct: 22 RVLDRLEQTRNRNIPAATDFLSPQEQASAEMLLHLAGVDGTEYVPLGGYEGAER-KIFLF 80
Query: 141 HPEALTSDPDIVAALSITGNFGFQP---CSHGDFLGSILGTGIAREKIGDIIL 190
P+ L + + ++P SH D LGS++G GI REK GDI++
Sbjct: 81 LPDWLDAQSAAEQSPIRCLRAKYRPEYDLSHRDILGSLMGMGITREKTGDILV 133
>gi|347522217|ref|YP_004779788.1| hypothetical protein LCGT_1611 [Lactococcus garvieae ATCC 49156]
gi|385833602|ref|YP_005871377.1| hypothetical protein [Lactococcus garvieae Lg2]
gi|343180785|dbj|BAK59124.1| conserved hypothetical protein [Lactococcus garvieae ATCC 49156]
gi|343182755|dbj|BAK61093.1| conserved hypothetical protein [Lactococcus garvieae Lg2]
Length = 265
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +L+ R + V+ + FL P + E + +L +++ + Q E ++ +
Sbjct: 18 IDRVLDWMDRVENNYSVVTTYFLNPREV-EILESLANKRELQIFSTQDIAQTELTKIIIA 76
Query: 141 HPEALTSDP-DI-VAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQNKG 194
PE D D +A L I+ F H LGS LG TGI R +IGDIIL N+G
Sbjct: 77 -PEFYQLDILDFDLALLEISYAQKFYQLKHSQILGSFLGQTGIRRSEIGDIIL-NEG 131
>gi|325263921|ref|ZP_08130654.1| putative S4 domain protein [Clostridium sp. D5]
gi|324030959|gb|EGB92241.1| putative S4 domain protein [Clostridium sp. D5]
Length = 258
Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ++E++ A R + +SDFL L + + V GGY AER +++
Sbjct: 10 KRLIELSMTAYHRDIITYSDFLNLNELNILHSLPKDRLYTRYVTFGGYGTAER-QMAAFL 68
Query: 142 PEAL----TSDPDIV----AALSIT--GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
P+AL +D + + + LSI + +H D+LG+ L GI R ++GDI++
Sbjct: 69 PDALYLRGITDMEALGFPFSVLSIEPLNEKYAEELTHRDYLGAALNLGIERSRLGDILID 128
Query: 192 NK 193
K
Sbjct: 129 GK 130
>gi|167771412|ref|ZP_02443465.1| hypothetical protein ANACOL_02778 [Anaerotruncus colihominis DSM
17241]
gi|167666052|gb|EDS10182.1| S4 domain protein [Anaerotruncus colihominis DSM 17241]
Length = 253
Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCS---HGDFLGSILGTGIARE 183
GGYP AER L P PD + + G++ H D LGS+ G I RE
Sbjct: 59 GGYPGAERVMLGAFAP---YEQPDETSFPIVPLTIGYRAQDAPGHRDLLGSLTGLAIGRE 115
Query: 184 KIGDIILQNKGFLC 197
IGDI++ + +C
Sbjct: 116 AIGDILVGGEYAVC 129
>gi|197301723|ref|ZP_03166793.1| hypothetical protein RUMLAC_00449 [Ruminococcus lactaris ATCC
29176]
gi|197299163|gb|EDY33693.1| S4 domain protein [Ruminococcus lactaris ATCC 29176]
Length = 270
Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 24/142 (16%)
Query: 70 KGVGDKNAIEEV----KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD---VK 122
K + N+ +EV + +++++R A R + +DFL L E + D
Sbjct: 3 KNYSNGNSEKEVHLLERRLIDLSRVAYQRDIITFTDFLN---LNEQNILHTLPKDSLYTG 59
Query: 123 AVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPC-------------SHG 169
+ GGY AER +++ PEAL+ L + FQ +H
Sbjct: 60 YILFGGYASAER-QMAAFIPEALSLRYGKKNLLPEELGYPFQAVEICPRNIRFAEDLTHR 118
Query: 170 DFLGSILGTGIAREKIGDIILQ 191
DFLG+IL GI R + GDI+L+
Sbjct: 119 DFLGAILNLGIERSRTGDILLE 140
>gi|302874637|ref|YP_003843270.1| RNA binding protein [Clostridium cellulovorans 743B]
gi|307690751|ref|ZP_07633197.1| RNA binding protein [Clostridium cellulovorans 743B]
gi|302577494|gb|ADL51506.1| RNA binding protein [Clostridium cellulovorans 743B]
Length = 255
Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
V L I + FQ H D+LGSI+ GI R K+GD+I+
Sbjct: 86 VKVLLIKTSNKFQRVEHKDYLGSIMSLGIKRSKLGDLIV 124
>gi|288553144|ref|YP_003425079.1| putative RNA-binding S4 domain-containing protein [Bacillus
pseudofirmus OF4]
gi|288544304|gb|ADC48187.1| putative RNA-binding S4 domain protein [Bacillus pseudofirmus OF4]
Length = 257
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
V+ +L S + +DFL P + + ++ GG +ER R +
Sbjct: 15 VEQVLSWKEEVSVMHQERRTDFLDPREQDIVRLIIGNDDELSYQFFGGADDSERKRAYLC 74
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ D +A SI F +H D LGS++ G+ REK GDI++
Sbjct: 75 PSYLVIEQSDFNLAYFSINYPAKFITLTHSDVLGSLMNIGLKREKFGDIMI 125
>gi|347534667|ref|YP_004841337.1| hypothetical protein LSA_10060 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504723|gb|AEN99405.1| hypothetical protein LSA_10060 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 263
Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
+ RA++ + +DFL + + + +++ + GGY +E R + +P+
Sbjct: 24 DWIERANTEYRPILTDFLNGREIYLLQTLVNRYPNLRLASNGGYINSEMKR-GLIYPDYF 82
Query: 146 T---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
+ +D ++ A L + F H LG+++G GI R +GDII
Sbjct: 83 SPRSADFEL-AILKVDYPVKFATLKHNQILGTVMGAGIERNVLGDII 128
>gi|295094443|emb|CBK83534.1| Uncharacterized conserved protein, contains S4-like domain
[Coprococcus sp. ART55/1]
Length = 259
Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 64 NFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKA 123
N +D+LKG + ++A A + +++FL+ ++ LE+L+
Sbjct: 2 NENDILKG-----------RLKDLANAAFRQNRYTYTNFLSAADMEVFYSNLEQLSFAGY 50
Query: 124 VAQGGYPQAERCRLSVGHPEALTSDPDI----VAALSITGNFGFQPCSHGDFLGSILGTG 179
GG +R + G+ P + +++ F +H DFLG+++ G
Sbjct: 51 TIFGGRESCDRVMIVFGNEADCGYAPAFPICTMKVSAVSDKFS-DDLNHRDFLGALMNLG 109
Query: 180 IAREKIGDIIL 190
I RE +GDI++
Sbjct: 110 IEREMVGDILV 120
>gi|160894535|ref|ZP_02075311.1| hypothetical protein CLOL250_02087 [Clostridium sp. L2-50]
gi|156863846|gb|EDO57277.1| S4 domain protein [Clostridium sp. L2-50]
Length = 259
Score = 39.3 bits (90), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 83 HILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHP 142
H+ ++A +A + ++FL+ L L ++ + GG +R + G
Sbjct: 10 HLNDLANKAYQKNIYTFTNFLSASDLDIFYSMLPDISHIPYEIFGGRDGCDRVMIRFGSE 69
Query: 143 EALTSD-PDIVAALSIT---GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
+ D P + L IT F SH D LGS++ GI RE GDII++
Sbjct: 70 DTTGYDLPFPITILQITPLMDKFS-DELSHRDVLGSLMNLGIEREMTGDIIMK 121
>gi|386317425|ref|YP_006013589.1| RNA binding protein [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
gi|417752513|ref|ZP_12400709.1| S4 domain protein [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|417927506|ref|ZP_12570894.1| S4 domain protein [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|323127712|gb|ADX25009.1| RNA binding protein [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
gi|333771711|gb|EGL48627.1| S4 domain protein [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|340765380|gb|EGR87906.1| S4 domain protein [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
Length = 263
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLA---DVKAVAQGGYPQAERCRL 137
++ + +M R S + +DFL P + L+ LA D+K + Y +E R+
Sbjct: 19 IEKMSDMINRVDSHYLLEVTDFLNP----REITILKSLAAPTDLKVFSSTDYYPSEYGRV 74
Query: 138 SVGHPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGT-GIAREKIGDIILQ 191
V + D +A + IT F +HG LG+++ GI R +GDI ++
Sbjct: 75 IVAPDYYDLDEADFQIALVEITYQAKFNQLTHGQILGTLINELGIKRSLLGDIFVE 130
>gi|299535882|ref|ZP_07049202.1| hypothetical protein BFZC1_07660 [Lysinibacillus fusiformis ZC1]
gi|424738822|ref|ZP_18167251.1| hypothetical protein C518_3366 [Lysinibacillus fusiformis ZB2]
gi|298728634|gb|EFI69189.1| hypothetical protein BFZC1_07660 [Lysinibacillus fusiformis ZC1]
gi|422947306|gb|EKU41703.1| hypothetical protein C518_3366 [Lysinibacillus fusiformis ZB2]
Length = 262
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV- 139
++ ++ R R +DFL P + + +K G + +AER R+ +
Sbjct: 16 IEQVISWQREVEDRYAPKLTDFLDPRQRFIVTSIIGQNDTLKTACTGLFEEAERQRMLIF 75
Query: 140 -GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
+ EA+ D +VA +I F H D LG++L G+ R K GDI + ++
Sbjct: 76 PTYYEAIEEDFQLVA-FTIQYPVKFVQLRHPDVLGALLSLGLNRGKFGDIRVNDQ 129
>gi|154496340|ref|ZP_02035036.1| hypothetical protein BACCAP_00628 [Bacteroides capillosus ATCC
29799]
gi|150274423|gb|EDN01500.1| S4 domain protein [Pseudoflavonifractor capillosus ATCC 29799]
Length = 266
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 99 HSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRL--SVGHPEALTSDPDIVAA 154
H+ FL+P M + + GG+ AER C PE +D +
Sbjct: 38 HTAFLSPQERSSVEMLINASGHPSHLFYGGFEGAERTICVFLPDWQAPEDWLADGEDFPI 97
Query: 155 LSITGNFGFQP-CSHGDFLGSILGTGIAREKIGDIIL 190
++ F +H DFLGSILG G+ REK+GD+++
Sbjct: 98 CALRCTFPEDAGLTHRDFLGSILGLGLDREKVGDLLV 134
>gi|253681860|ref|ZP_04862657.1| RNA binding protein [Clostridium botulinum D str. 1873]
gi|253561572|gb|EES91024.1| RNA binding protein [Clostridium botulinum D str. 1873]
Length = 261
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
V L+I F H DFLG+++ GI REK GD+I+
Sbjct: 90 VELLNIINMSAFSKLKHSDFLGALMSLGIKREKFGDLIVD 129
>gi|390630014|ref|ZP_10258004.1| S4 domain-containing protein YlmH [Weissella confusa LBAE C39-2]
gi|390484805|emb|CCF30352.1| S4 domain-containing protein YlmH [Weissella confusa LBAE C39-2]
Length = 261
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Query: 100 SDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCRLSVGHPEALTSDPDI--VA 153
++FL P LE L ++K GGY AE R S+ P+ D +A
Sbjct: 36 TNFLNP----RQRYILETLVNQHDELKIAHSGGYTDAESAR-SLIAPDYYDVQQDDFEIA 90
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
A+ I F H LG+++ G++R+ GDII +G
Sbjct: 91 AIRINYPTKFAELHHSTVLGTLINNGLSRDSFGDIISSEEG 131
>gi|317056648|ref|YP_004105115.1| RNA-binding S4 domain-containing protein [Ruminococcus albus 7]
gi|315448917|gb|ADU22481.1| RNA-binding S4 domain protein [Ruminococcus albus 7]
Length = 259
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAAL---SITGNFGFQ-PCSHGDFLGSILGTGIAR 182
GGY +AER L V P + DI+ + S+T F + H DFLGS++ GI R
Sbjct: 66 GGYNEAERKMLCVYPPYS----DDIINSFPMRSLTFRFRREDKLDHRDFLGSLMALGITR 121
Query: 183 EKIGDIIL 190
+GDI++
Sbjct: 122 GCVGDILV 129
>gi|323340623|ref|ZP_08080875.1| S4 domain-containing protein YlmH [Lactobacillus ruminis ATCC
25644]
gi|335996874|ref|ZP_08562791.1| ribosomal protein S4e [Lactobacillus ruminis SPM0211]
gi|417974377|ref|ZP_12615198.1| RNA binding protein [Lactobacillus ruminis ATCC 25644]
gi|323091746|gb|EFZ34366.1| S4 domain-containing protein YlmH [Lactobacillus ruminis ATCC
25644]
gi|335351944|gb|EGM53435.1| ribosomal protein S4e [Lactobacillus ruminis SPM0211]
gi|346329374|gb|EGX97672.1| RNA binding protein [Lactobacillus ruminis ATCC 25644]
Length = 261
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 86 EMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEAL 145
E+ RA + + FL P + + + + DVK GG+ +ER R+ + +PE
Sbjct: 21 EVIVRAKDEYRPILTHFLNPRQHFIADVLIGRFDDVKLKTFGGFSGSERKRI-LFYPEYY 79
Query: 146 T-SDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG--FLCSGCL 201
D D ++ L I F H LG++ G+ R+ IGDII F C +
Sbjct: 80 EPQDNDFSMSLLEINYPVKFAKLEHRTILGTLANCGLERDVIGDIITDGTKWQFFCEKEI 139
Query: 202 Q 202
+
Sbjct: 140 E 140
>gi|421894307|ref|ZP_16324797.1| S4 domain protein [Pediococcus pentosaceus IE-3]
gi|385272851|emb|CCG90169.1| S4 domain protein [Pediococcus pentosaceus IE-3]
Length = 261
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 91 ASSRREVLH------SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEA 144
+SS +E L+ ++FL P + + ++K GG+ +AE R +
Sbjct: 21 SSSLQEALYQNRPILTNFLNPREQHILQTLVNRFPELKVYFNGGFSEAENKRALITPDYF 80
Query: 145 LTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK--GFLCSGCL 201
+ ++ D V I F H LG+++ GI R GDI+ Q + F +G L
Sbjct: 81 VPAEDDFSVRIFEINYPINFTDLEHRQILGTLVNAGIKRSTFGDIVHQAERWQFAVNGEL 140
Query: 202 Q 202
+
Sbjct: 141 E 141
>gi|365135099|ref|ZP_09343624.1| hypothetical protein HMPREF1032_01420 [Subdoligranulum sp.
4_3_54A2FAA]
gi|363613069|gb|EHL64593.1| hypothetical protein HMPREF1032_01420 [Subdoligranulum sp.
4_3_54A2FAA]
Length = 254
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
GGYP AER R+ E +P L + +H D+LG+++ GI RE IG
Sbjct: 62 GGYPDAER-RILRLFGEYGAQEPLPAVCLFAQTLRADRALTHRDYLGALMSLGIRRECIG 120
Query: 187 DIILQNKG 194
DI+L G
Sbjct: 121 DILLSEDG 128
>gi|227893342|ref|ZP_04011147.1| ribosomal protein S4e [Lactobacillus ultunensis DSM 16047]
gi|227864757|gb|EEJ72178.1| ribosomal protein S4e [Lactobacillus ultunensis DSM 16047]
Length = 266
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
+ E++ +DFL P K +++ D GGYP AE+ R+ + E L+ P
Sbjct: 34 KHELILTDFLDPG--KRAILKTIVGNDAFTQEYGGYPNAEKKRVYLSE-EWLSLRPSDYQ 90
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ I F +H LG++ +GI + GDI+ KG
Sbjct: 91 IQPYEIEYPQKFMQINHSAILGTLANSGINTDTFGDILTDGKG 133
>gi|320530724|ref|ZP_08031768.1| S4 domain protein [Selenomonas artemidis F0399]
gi|320137011|gb|EFW28949.1| S4 domain protein [Selenomonas artemidis F0399]
Length = 264
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 127 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGY AER R + H + A T + ++ N F +H D LG+++G GI R +
Sbjct: 68 GGYAGAERQRAMLLHEDFAGTPGGYEIVCVTAAWNGQFAHLTHRDVLGALMGLGIDRGGV 127
Query: 186 GDIIL 190
GDI+L
Sbjct: 128 GDILL 132
>gi|313895940|ref|ZP_07829494.1| S4 domain protein [Selenomonas sp. oral taxon 137 str. F0430]
gi|312975365|gb|EFR40826.1| S4 domain protein [Selenomonas sp. oral taxon 137 str. F0430]
Length = 264
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 127 GGYPQAERCRLSVGHPE-ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKI 185
GGY AER R + H + A T + ++ N F +H D LG+++G GI R +
Sbjct: 68 GGYAGAERQRAMLLHEDFAGTPGGYEIVCVTAAWNGQFAHLTHRDVLGALMGLGIDRGGV 127
Query: 186 GDIIL 190
GDI+L
Sbjct: 128 GDILL 132
>gi|297530699|ref|YP_003671974.1| RNA-binding S4 domain-containing protein [Geobacillus sp. C56-T3]
gi|297253951|gb|ADI27397.1| RNA-binding S4 domain protein [Geobacillus sp. C56-T3]
Length = 257
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +LE S + +DFL P + DV+ GG P ER R +
Sbjct: 15 IDQVLEWKEMVSRQYAPKLTDFLDPREQQIVQSITGGDGDVRVFFFGGAPFVERKRAFLA 74
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
P + D + ++ F H D LG+++ G+ R K GDI++++
Sbjct: 75 PPYIDPEEEDYGIVLFAVRYPAKFVSLEHRDVLGALMSLGLRRGKFGDILVRD 127
>gi|448237302|ref|YP_007401360.1| putative RNA-binding protein [Geobacillus sp. GHH01]
gi|445206144|gb|AGE21609.1| putative RNA-binding protein [Geobacillus sp. GHH01]
Length = 257
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +LE S + +DFL P + DV+ GG P ER R +
Sbjct: 15 IDQVLEWKEMVSRQYAPKLTDFLDPREQQIVQSITGGDGDVRVFFFGGAPFVERKRAFLA 74
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
P + D + ++ F H D LG+++ G+ R K GDI++++
Sbjct: 75 PPYIDPEEEDYGIVLFAVRYPAKFVSLEHRDVLGALMSLGLRRGKFGDILVRD 127
>gi|408356933|ref|YP_006845464.1| hypothetical protein AXY_15700 [Amphibacillus xylanus NBRC 15112]
gi|407727704|dbj|BAM47702.1| hypothetical protein AXY_15700 [Amphibacillus xylanus NBRC 15112]
Length = 260
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +L + + +SDFL P + + K V GG P AER + +
Sbjct: 15 IDQVLSWKDQVEKQYITKYSDFLDPREQYIFQNIIGQDEQFKLVFFGGIPNAERKQAILA 74
Query: 141 -HPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
E + S+ ++ L+ F H D LG+ L G+ R+K+GD+
Sbjct: 75 PFYEEIDSNSFPISVLTTKYPAKFVTIEHRDVLGAFLSLGLLRKKLGDL 123
>gi|387817744|ref|YP_005678089.1| hypothetical protein H04402_01539 [Clostridium botulinum H04402
065]
gi|322805786|emb|CBZ03351.1| hypothetical protein, contains S4-like RNA binding domain
[Clostridium botulinum H04402 065]
Length = 205
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIG 186
G + AER +G D +V A I+ N F H DFLG++ GI REK+G
Sbjct: 13 GVFKDAER--QIIGFNVYDIEDFPVVLA-KISYNSKFVNLEHKDFLGALTSLGIKREKMG 69
Query: 187 DIILQ 191
D++L+
Sbjct: 70 DLVLK 74
>gi|402303250|ref|ZP_10822346.1| S4 domain protein [Selenomonas sp. FOBRC9]
gi|400378880|gb|EJP31730.1| S4 domain protein [Selenomonas sp. FOBRC9]
Length = 264
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 127 GGYPQAERCRLSVGHPEALTSDPDIVAALSITG--NFGFQPCSHGDFLGSILGTGIAREK 184
GGY AER R + H E P + +T N F +H D LG+++G GI R
Sbjct: 68 GGYAGAERQRAMLLH-EDFAGTPGGCEIVCVTAAWNGQFAHLTHRDVLGALMGLGIDRGG 126
Query: 185 IGDIIL 190
+GDI+L
Sbjct: 127 VGDILL 132
>gi|385814079|ref|YP_005850472.1| Cell division protein, S4-like domain [Lactobacillus helveticus
H10]
gi|323466798|gb|ADX70485.1| Cell division protein, S4-like domain [Lactobacillus helveticus
H10]
Length = 266
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
+ E + +DFL P K +++ DV GGYP AE+ R+ + E + P +
Sbjct: 34 KHEPILTDFLDPG--KRAILKTIVGNDVFMQEYGGYPNAEKKRVYLSE-EWVNLQPSDYL 90
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ I F +H LG++ +GI + GDII G
Sbjct: 91 IEPYEIEYPQKFIKINHSAILGTLANSGIETDTFGDIITDENG 133
>gi|118443110|ref|YP_878020.1| YlmH protein [Clostridium novyi NT]
gi|118133566|gb|ABK60610.1| YlmH protein, putative [Clostridium novyi NT]
Length = 261
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 125 AQGGYPQAERCRLSV---GHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIA 181
A G + +++R +S+ E + + P + + I F+ H DFLG+++ G+
Sbjct: 62 AFGIFKESDRRVISILGAYDHEEIYNYP--IELIRIDNKSTFKKLKHSDFLGALMAQGLK 119
Query: 182 REKIGDIILQNKGF---LCSGCLQYTL 205
REK GD+I++ +CS Q+ +
Sbjct: 120 REKFGDLIVKGDSCYVPICSDISQFII 146
>gi|161507320|ref|YP_001577274.1| cell division protein [Lactobacillus helveticus DPC 4571]
gi|260102623|ref|ZP_05752860.1| cell-division protein [Lactobacillus helveticus DSM 20075]
gi|160348309|gb|ABX26983.1| Cell division protein [Lactobacillus helveticus DPC 4571]
gi|260083577|gb|EEW67697.1| cell-division protein [Lactobacillus helveticus DSM 20075]
Length = 266
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
+ E + +DFL P K +++ DV GGYP AE+ R+ + E + P +
Sbjct: 34 KHEPILTDFLDPG--KRAILKTIVGNDVFMQEYGGYPNAEKKRVYLSE-EWVNLQPSDYL 90
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ I F +H LG++ +GI + GDII G
Sbjct: 91 IQPYEIEYPQKFIKINHSAILGTLANSGIETDTFGDIITDENG 133
>gi|116492942|ref|YP_804677.1| cell division protein [Pediococcus pentosaceus ATCC 25745]
gi|116103092|gb|ABJ68235.1| Cell division protein, S4-like domain [Pediococcus pentosaceus ATCC
25745]
Length = 261
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
++FL P + + ++K GG+ +AE R + + ++ D V I
Sbjct: 36 TNFLNPREQHILQTLVNRFPELKVYFNGGFSEAENKRALITPDYFVPAEDDFSVRIFEIN 95
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK--GFLCSGCLQ 202
F H LG+++ GI R GDI+ Q + F +G L+
Sbjct: 96 YPINFTDLEHRQILGTLVNAGIKRSTFGDIVHQAERWQFAVNGELE 141
>gi|403515290|ref|YP_006656110.1| cell division protein [Lactobacillus helveticus R0052]
gi|403080728|gb|AFR22306.1| cell division protein [Lactobacillus helveticus R0052]
Length = 266
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 94 RREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPD--I 151
+ E + +DFL P K +++ DV GGYP AE+ R+ + E + P +
Sbjct: 34 KHEPILTDFLDPG--KRAILKTIVGNDVFMQEYGGYPNAEKKRVYLSE-EWVNLQPSDYL 90
Query: 152 VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
+ I F +H LG++ +GI + GDII G
Sbjct: 91 IQPYEIEYPQKFIKINHSAILGTLANSGIETDTFGDIITDENG 133
>gi|229918558|ref|YP_002887204.1| RNA-binding S4 domain-containing protein [Exiguobacterium sp. AT1b]
gi|229469987|gb|ACQ71759.1| RNA-binding S4 domain protein [Exiguobacterium sp. AT1b]
Length = 256
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVA--QGGYPQAERCRLS 138
V+ +L+ ++ + + +DFL P +++L + V GG+ AER RL
Sbjct: 15 VEQVLDWVQQVENSYVLKLTDFLDP----REQQIVKQLVGKQLVIHDDGGFEGAERRRLI 70
Query: 139 VGHPEALTSDPDI--VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
+ P+ +PD + I F +H G++L G+ R+K GD++L +
Sbjct: 71 LA-PDYYELNPDDFEIEVRRIEYPTKFVDLTHRQVTGTLLNAGLKRQKFGDVVLDEE 126
>gi|262037759|ref|ZP_06011201.1| oligoendopeptidase F [Leptotrichia goodfellowii F0264]
gi|261748231|gb|EEY35628.1| oligoendopeptidase F [Leptotrichia goodfellowii F0264]
Length = 885
Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 22/112 (19%)
Query: 101 DFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV----------GHPEALTSDPD 150
+F TP + K+ EK+ ++K A G + ++R +++ E + SD D
Sbjct: 39 EFYTPNIWKK---LTEKIENIKIEANGIFENSDRRQIAFIPEGFYGKNSSGIEEIYSDAD 95
Query: 151 ---------IVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
L I N F+ H DFLGS+ G I RE +GD+I +
Sbjct: 96 GDNKNSAEFPSKLLKIKINSRFREYGHKDFLGSLTGLNIKRELMGDLIFDKE 147
>gi|365904414|ref|ZP_09442173.1| hypothetical protein LverK3_02439 [Lactobacillus versmoldensis KCTC
3814]
Length = 266
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 115 LEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAAL-SITGNFGFQPCSHGDFLG 173
+ K D+ GGY AER R + + D L + F HG LG
Sbjct: 56 VNKYDDLFVHYYGGYEGAERVRGMIAPDYFVPQQEDFHEQLFEVRYPEKFANLHHGQILG 115
Query: 174 SILGTGIAREKIGDIILQNK 193
S+ G GI R+ GDII K
Sbjct: 116 SLTGAGIDRDHFGDIITDGK 135
>gi|89101248|ref|ZP_01174071.1| hypothetical protein B14911_02005 [Bacillus sp. NRRL B-14911]
gi|89084041|gb|EAR63219.1| hypothetical protein B14911_02005 [Bacillus sp. NRRL B-14911]
Length = 257
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDIVAALSITG 159
+DFL P + M + + + VK GG ER R ++ +P+ T D + +
Sbjct: 34 TDFLDPREQQIVKMIVGEHSGVKLRLFGGTEGTERKR-ALLYPKYFTPDEEEFSITLFEI 92
Query: 160 NF--GFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
N+ F H LGS++ G+ R K GDI +Q++
Sbjct: 93 NYPSKFVSIEHPQILGSLMALGLKRGKFGDITVQDE 128
>gi|418576429|ref|ZP_13140575.1| hypothetical protein SSME_16310 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325491|gb|EHY92623.1| hypothetical protein SSME_16310 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 259
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 75 KNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER 134
K E + +++ RA+ + + + FL P + D++ GG P AER
Sbjct: 12 KEEHELIDQLIDKCNRANDQYSPILTPFLDPRGQYIMNVVAGSFEDLEVTFYGG-PFAER 70
Query: 135 CRLSVGHPEALTSDPDIVAALSITGNF--GFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
R + P D + + I ++ F H LG+I+ GI R+++GDI++ +
Sbjct: 71 KRAMIA-PSYFQPDAEAFEIVLIEIDYPQKFVTLQHQHILGTIMSLGIERDQLGDIVVDD 129
Query: 193 KGFLCSGCLQYTL 205
+ +Q+TL
Sbjct: 130 R-------IQFTL 135
>gi|452995419|emb|CCQ92906.1| putative RNA-binding protein ylmH [Clostridium ultunense Esp]
Length = 261
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Query: 100 SDFLTPPVLKESMMALEKLA----DVKAVAQGGYPQAERCR--LSVGHPEALTSDPDIVA 153
+DFL P M L LA + GGY AER R L + +
Sbjct: 36 TDFLDP----RQMEILRNLAMHRGGIALFENGGYEGAERKRTLLLPEGENPPEEEEFHIG 91
Query: 154 ALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKG 194
L I F H D+LG++L GI REK GD+ +G
Sbjct: 92 FLHIRPRGRFYSLEHRDYLGALLHVGIKREKFGDLWTVEEG 132
>gi|429761447|ref|ZP_19293872.1| S4 domain protein [Anaerostipes hadrus DSM 3319]
gi|429183700|gb|EKY24741.1| S4 domain protein [Anaerostipes hadrus DSM 3319]
Length = 251
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ++E+ +A ++ ++ FL ++LA + GG+ R + G
Sbjct: 9 KRLMELCEKAYNQNIYTYTHFLNEYEQSIYQDMKQELAYAHPILVGGHKYFTRAVVMFGS 68
Query: 142 PEALTSD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
E P + A +S + + SH D+LG+++ GI R IGDI++ +
Sbjct: 69 EELFGYQGEVPVVCARISPVFDKFAEELSHRDYLGALMNLGIERHLIGDILIDGR 123
>gi|167765520|ref|ZP_02437584.1| hypothetical protein CLOSS21_00014 [Clostridium sp. SS2/1]
gi|167712705|gb|EDS23284.1| S4 domain protein [Clostridium sp. SS2/1]
gi|291558988|emb|CBL37788.1| Uncharacterized conserved protein, contains S4-like domain
[butyrate-producing bacterium SSC/2]
Length = 251
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ++E+ +A ++ ++ FL ++LA + GG+ R + G
Sbjct: 9 KRLMELCEKAYNQNIYTYTHFLNEYEQSIYQDMKQELAYAHPILVGGHKYFTRAVVMFGS 68
Query: 142 PEALTSD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
E P + A +S + + SH D+LG+++ GI R IGDI++ +
Sbjct: 69 EELFGYQGEVPVVCARISPVFDKFAEELSHRDYLGALMNLGIERHLIGDILIDGR 123
>gi|302672285|ref|YP_003832245.1| RNA-binding S4 domain-containing protein [Butyrivibrio
proteoclasticus B316]
gi|302396758|gb|ADL35663.1| RNA-binding S4 domain-containing protein [Butyrivibrio
proteoclasticus B316]
Length = 271
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 29/134 (21%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEKLAD------------VKAVAQGGYPQ 131
I ++A RA V H+DFL+ + E M + LA V GG
Sbjct: 15 IKDLANRAYLNGFVTHTDFLS---VSEIAMFYQILASEGVPGNVHEYCGASYVVYGGAED 71
Query: 132 AERCRLSVGHPEALTSDPDIVAALS------------ITGNFGFQPCSHGDFLGSILGTG 179
AER + P+ L + +V+ + + F +H D+LGSI+ G
Sbjct: 72 AERAMVCF-LPDYLDEETFLVSEKADNTVLKCVHIKPLNNKFA-DDLNHRDYLGSIMNLG 129
Query: 180 IAREKIGDIILQNK 193
I R++IGDI+ +K
Sbjct: 130 IERDQIGDILAGDK 143
>gi|261419331|ref|YP_003253013.1| RNA-binding S4 domain-containing protein [Geobacillus sp. Y412MC61]
gi|319766147|ref|YP_004131648.1| RNA-binding S4 domain-containing protein [Geobacillus sp. Y412MC52]
gi|261375788|gb|ACX78531.1| RNA-binding S4 domain protein [Geobacillus sp. Y412MC61]
gi|317111013|gb|ADU93505.1| RNA-binding S4 domain protein [Geobacillus sp. Y412MC52]
Length = 257
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 1/111 (0%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ +LE S + +DFL P + DV+ GG P ER R +
Sbjct: 15 IDQVLEWKEMVSRQYAPKLTDFLDPREQQIVQSITGGDGDVRVFFFGGAPFVERKRAFLA 74
Query: 141 HPEALTSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
P + D + ++ F H D LG+++ G+ R K GDI++
Sbjct: 75 PPYIDPEEEDYGIVLFAVRYPAKFVSLEHRDVLGALMSLGLRRGKFGDILV 125
>gi|222151012|ref|YP_002560165.1| hypothetical protein MCCL_0762 [Macrococcus caseolyticus JCSC5402]
gi|222120134|dbj|BAH17469.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 257
Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137
IE VK + ++ +A S+ + + FL P + + L D+ GG + ER R
Sbjct: 12 IETVKVLEDLVAQAESQYAPILTHFLDPR-QQFILTTLVNRTDLNVSFYGGSGERERVR- 69
Query: 138 SVGHPE--ALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDII 189
++ +PE + + V+A + F +H + LG+++ G RE +GDII
Sbjct: 70 ALIYPEYYEVQQEDFEVSAFKVKYAQKFVTLTHRNVLGALMQLGFKREYLGDII 123
>gi|205373286|ref|ZP_03226090.1| RNA-binding S4 domain-containing protein [Bacillus coahuilensis
m4-4]
Length = 257
Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAER--CRLSVGHPEALTSDPDIVAALSI 157
+DFL P + + ++V +G P AER C + + + D D+ A L +
Sbjct: 34 TDFLHPRERQIVEAIIGSQSEVLVSFEGLLPDAERKRCLIYPDYFQPKIEDFDL-ALLEV 92
Query: 158 TGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
F H LG+++ GI REK GDI+L +
Sbjct: 93 EYPRKFITLEHRQILGALMSLGIRREKYGDILLSD 127
>gi|317498471|ref|ZP_07956765.1| S4 domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA]
gi|316894164|gb|EFV16352.1| S4 domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA]
Length = 251
Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGH 141
K ++E+ +A ++ ++ FL ++LA + GG+ R + G
Sbjct: 9 KRLMELCEKAYNQNIYTYTHFLNEYEQSIYQDMKQELAYAHPILVGGHKYFTRAVVMFGS 68
Query: 142 PEALTSD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
E P + A +S + + SH D+LG+++ GI R IGDI++ +
Sbjct: 69 EELFGYQGEVPVVCARISPVFDKFAEELSHRDYLGALMNLGIERYLIGDILIDGR 123
>gi|239826539|ref|YP_002949163.1| RNA-binding S4 domain-containing protein [Geobacillus sp. WCH70]
gi|239806832|gb|ACS23897.1| RNA-binding S4 domain protein [Geobacillus sp. WCH70]
Length = 257
Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + + +V+ GG P ER R + P +D D +A +
Sbjct: 34 TDFLDPREQQIVQSVIGRDEEVRIAFFGGAPFVERKRALLFPPYFQPADEDYEIALFEVH 93
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
F H LG+++ G+ R K GDI+++ +
Sbjct: 94 YPSKFISLEHRQVLGALMSLGLRRGKFGDILMKEE 128
>gi|386714188|ref|YP_006180511.1| hypothetical protein HBHAL_2889 [Halobacillus halophilus DSM 2266]
gi|384073744|emb|CCG45237.1| conserved hypothetical protein [Halobacillus halophilus DSM 2266]
Length = 257
Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
SDFL P + D GG QAER R + + + D + L +
Sbjct: 34 SDFLNPREQDIVKAVMGNHPDFNFGLSGGKDQAERKRAIIAPEYEIIEEEDYQLTMLEAS 93
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
F H D LG+ + GI REK+GD+++++
Sbjct: 94 YPAKFVTLEHPDVLGAFMSLGIRREKLGDLVVKD 127
>gi|311029944|ref|ZP_07708034.1| RNA binding protein [Bacillus sp. m3-13]
Length = 258
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 100 SDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTSDPDI-VAALSIT 158
+DFL P + + DVK GG AER R + P + D + A ++
Sbjct: 35 TDFLDPREQEIVKSVVGNNEDVKLAFHGGANGAERKRALLYPPYLEPTAEDFGLKAYDLS 94
Query: 159 GNFGFQPCSHGDFLGSILGTGIAREKIGDIILQN 192
F H LGS++G G+ R K GDI +
Sbjct: 95 YPEKFVKIEHRQVLGSLMGIGLKRSKFGDIYFHD 128
>gi|399517498|ref|ZP_10759048.1| hypothetical protein, contains S4-like RNA binding domain
[Leuconostoc pseudomesenteroides 4882]
gi|398647622|emb|CCJ67075.1| hypothetical protein, contains S4-like RNA binding domain
[Leuconostoc pseudomesenteroides 4882]
Length = 265
Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
++ +L+ ++A ++ + FL P + + + +++ GG AE R +
Sbjct: 20 IQQVLDWVKQADDDYRLILTRFLNPREQYILQTLINRQSGLRSYLYGGVDGAESQRAIIA 79
Query: 141 HPEAL-TSDPDI-VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
PE D + L++ F H LGS++ GI+R+ +GDI+ N+
Sbjct: 80 -PEVFEVKQEDFEIGLLTVQYPKKFATLHHSTILGSLMHLGISRDVLGDILFDNE 133
>gi|238916862|ref|YP_002930379.1| hypothetical protein EUBELI_00931 [Eubacterium eligens ATCC 27750]
gi|238872222|gb|ACR71932.1| Hypothetical protein EUBELI_00931 [Eubacterium eligens ATCC 27750]
Length = 251
Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 84 ILEMARRASSRREVLHSDFLTPPVLKESMMALEK--LADVKAVAQGGYPQAERCRLSVGH 141
I++ A R+ + +++FL + ++S+ A K L V GG ER + G
Sbjct: 11 IMDAANRSFRQNIYTYTNFL--DINEQSVFAQMKNPLNFVAFKTYGGNDACERQMIQFGS 68
Query: 142 PEALTSD---PDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
E L + P + +S + SH D+LG+++ GI RE +GDI ++ K
Sbjct: 69 FETLGYEEEFPITLIKISPLIEKYAESLSHRDYLGALMNLGIKREMLGDINIKGK 123
>gi|409350244|ref|ZP_11233430.1| S4 domain protein [Lactobacillus equicursoris CIP 110162]
gi|407877568|emb|CCK85488.1| S4 domain protein [Lactobacillus equicursoris CIP 110162]
Length = 266
Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ + + + R + E + +DFL P K ++ ++ GGY +AE+ R+
Sbjct: 22 IDYFVGLFNRVLYQGEPVLTDFLDPR--KRQILQAVAGGEIMLDEYGGYDEAEKKRVY-- 77
Query: 141 HPEALTSD----PDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
LTSD P V+ L I+ F H LGS+ +G+ E GDI+ +
Sbjct: 78 ----LTSDWLPLPKKEFGVSLLEISYPQKFAQLRHSQILGSLANSGVKTETFGDIVTDGQ 133
Query: 194 G 194
G
Sbjct: 134 G 134
>gi|408411391|ref|ZP_11182550.1| S4 domain protein [Lactobacillus sp. 66c]
gi|407874400|emb|CCK84356.1| S4 domain protein [Lactobacillus sp. 66c]
Length = 265
Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVG 140
+ + + + R + E + +DFL P K ++ ++ GGY +AE+ R+
Sbjct: 21 IDYFVGLFNRVLYQGEPVLTDFLDPR--KRQILQAVAGGEIMLDEYGGYDEAEKKRVY-- 76
Query: 141 HPEALTSD----PDI---VAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNK 193
LTSD P V+ L I+ F H LGS+ +G+ E GDI+ +
Sbjct: 77 ----LTSDWLPLPKKEFGVSLLEISYPQKFAQLRHSQILGSLANSGVKTETFGDIVTDGQ 132
Query: 194 G 194
G
Sbjct: 133 G 133
>gi|354558730|ref|ZP_08977984.1| RNA-binding S4 domain protein [Desulfitobacterium metallireducens
DSM 15288]
gi|353545792|gb|EHC15242.1| RNA-binding S4 domain protein [Desulfitobacterium metallireducens
DSM 15288]
Length = 265
Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 80 EVKHILEMARRASSRREVLHSDFLTPPVLK--ESMMALEKLADVKAVAQGGYPQAER-CR 136
E H+L++A A + + FL + + E ++ E L+ AQGG+ +ER C
Sbjct: 21 EAAHLLDLADEAIDNSLSVRTPFLGLSLAQWFEGVIQKESLS---YKAQGGFSDSERVCY 77
Query: 137 LSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
+ + L + + L + H LGS++G G+ RE IGDI
Sbjct: 78 FLGQNGQDLDQVQNGITLLEVLSTDPHVALEHRQILGSLMGLGLKRELIGDI 129
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,329,377,499
Number of Sequences: 23463169
Number of extensions: 134167325
Number of successful extensions: 345892
Number of sequences better than 100.0: 691
Number of HSP's better than 100.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 386
Number of HSP's that attempted gapping in prelim test: 345235
Number of HSP's gapped (non-prelim): 711
length of query: 205
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 69
effective length of database: 9,168,204,383
effective search space: 632606102427
effective search space used: 632606102427
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 73 (32.7 bits)