BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028677
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P71020|YLMH_BACSU Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168)
GN=ylmH PE=4 SV=1
Length = 257
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMM--ALEKLADVKAVAQGGYPQAERCRLS 138
+ LE R + + +DFL P +E ++ A+ ADV GGY +AER R +
Sbjct: 16 IDQALEWKRIVQEQYRMKLTDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKR-A 71
Query: 139 VGHPEALT---SDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIIL 190
+ PE +T SD ++ A ++ F H LG+++G G+ R+K GDI+
Sbjct: 72 ILFPEYITPEESDFEL-QAFNVRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF 125
>sp|Q9GZM7|TINAL_HUMAN Tubulointerstitial nephritis antigen-like OS=Homo sapiens
GN=TINAGL1 PE=1 SV=1
Length = 467
Score = 33.9 bits (76), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 143 EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
E DPD++ A++ GN+G+Q +H F G L GI R ++G I
Sbjct: 138 EPCLVDPDMIKAIN-QGNYGWQAGNHSAFWGMTLDEGI-RYRLGTI 181
>sp|Q99JR5|TINAL_MOUSE Tubulointerstitial nephritis antigen-like OS=Mus musculus
GN=Tinagl1 PE=1 SV=1
Length = 466
Score = 33.5 bits (75), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 143 EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDI 188
E DPD++ A++ GN+G+Q +H F G L GI R ++G I
Sbjct: 137 EPCLVDPDMIKAIN-RGNYGWQAGNHSAFWGMTLDEGI-RYRLGTI 180
>sp|P79202|CP11A_SHEEP Cholesterol side-chain cleavage enzyme, mitochondrial OS=Ovis aries
GN=CYP11A1 PE=1 SV=1
Length = 520
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 42 TFPTSLRHTASGIRHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASS----RREV 97
+P L H + L++ VK N ++L G D ++ H+ EMAR + R+EV
Sbjct: 296 NYPGILYHLLKSEKMLLEDVKANITEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLRKEV 355
Query: 98 LHSD----------FLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133
L++ P+LK S+ +L + Q YP+++
Sbjct: 356 LNARRQAEGDISKMLQMVPLLKASIKETLRLHPISVTLQ-RYPESD 400
>sp|A8FYR5|PNP_SHESH Polyribonucleotide nucleotidyltransferase OS=Shewanella sediminis
(strain HAW-EB3) GN=pnp PE=3 SV=1
Length = 704
Score = 31.6 bits (70), Expect = 3.7, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK----ESMMALEKLADVK 122
D V D + + ++K + E A+ + EV + V+K E+++A AD++
Sbjct: 234 DWTAPVQDADLVAKIKDLAEAEMAAAYQIEVKQDRYTQVGVVKSAAKEALLAENPEADLR 293
Query: 123 AV---AQGGYPQAERCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFL 172
+ Q R R+ G+P +PD+V L++ G P +HG L
Sbjct: 294 EIDGLLGSLEKQVVRSRIIAGNPRIDGREPDMVRGLNVMA--GVLPRTHGSAL 344
>sp|P79153|CP11A_CAPHI Cholesterol side-chain cleavage enzyme, mitochondrial OS=Capra
hircus GN=CYP11A1 PE=2 SV=1
Length = 520
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 42 TFPTSLRHTASGIRHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASS----RREV 97
+P L H + L++ VK N ++L G D ++ H+ EMAR + R EV
Sbjct: 296 NYPGILYHLLKSEKMLLEDVKANITEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREEV 355
Query: 98 LHS 100
L++
Sbjct: 356 LNA 358
>sp|B8CKH8|PNP_SHEPW Polyribonucleotide nucleotidyltransferase OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=pnp PE=3 SV=1
Length = 701
Score = 30.8 bits (68), Expect = 6.8, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 67 DLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLK----ESMMALEKLADVK 122
D V D+ + ++K + E + + EV + V+K E+++A AD++
Sbjct: 231 DWTAPVQDQELVAKIKDLAEAGLTEAYQIEVKQDRYTQVGVIKSAAKEALLAENPEADLR 290
Query: 123 AVAQGGYPQAE----RCRLSVGHPEALTSDPDIVAALSITGNFGFQPCSHGDFL 172
+ G E R R+ G+P +PD+V AL++ G P +HG L
Sbjct: 291 EI-DGLLGSLEKKVVRSRIIAGNPRIDGREPDMVRALNVMA--GVLPRTHGSSL 341
>sp|P77221|YAHG_ECOLI Uncharacterized protein YahG OS=Escherichia coli (strain K12)
GN=yahG PE=4 SV=1
Length = 472
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 143 EALTSDPDIVAALSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQNKGFLCSGCLQ 202
E L D D A L+ +G F PC D +GS+ G+ + I++NK + G +
Sbjct: 125 EGLAKDLDEAAELAASGEITFSPCHEHDCVGSM--AGVTSASMFMHIVKNKTY---GNIA 179
Query: 203 YT 204
YT
Sbjct: 180 YT 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,639,163
Number of Sequences: 539616
Number of extensions: 3268164
Number of successful extensions: 8175
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 8170
Number of HSP's gapped (non-prelim): 14
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)