Query 028677
Match_columns 205
No_of_seqs 116 out of 486
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 01:42:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fph_X YLMH; division protein, 100.0 1.2E-39 4.2E-44 267.6 7.0 125 68-194 2-128 (165)
2 2g0c_A ATP-dependent RNA helic 84.6 0.51 1.8E-05 32.4 2.3 31 164-194 11-42 (76)
3 3gku_A Probable RNA-binding pr 65.1 20 0.00067 30.3 7.3 60 78-139 148-207 (225)
4 1msz_A DNA-binding protein smu 34.4 1.3E+02 0.0043 21.7 6.4 55 81-139 21-75 (86)
5 2cpm_A Sperm-associated antige 19.5 2.6E+02 0.0088 20.1 6.5 50 91-144 24-75 (94)
6 3idw_A Actin cytoskeleton-regu 18.9 14 0.00047 26.2 -1.3 13 174-189 43-55 (72)
7 3kmh_A D-lyxose isomerase; cup 18.6 79 0.0027 27.2 3.1 52 78-129 22-80 (246)
8 2ki0_A DS119; beta-alpha-beta, 18.3 40 0.0014 20.3 0.9 23 104-127 13-35 (36)
9 1g2y_A Hepatocyte nuclear fact 16.7 42 0.0014 20.2 0.7 17 168-184 9-25 (32)
10 1jhg_A Trp operon repressor; c 12.6 1.1E+02 0.0038 22.5 2.2 38 78-115 9-48 (101)
No 1
>2fph_X YLMH; division protein, bacteria, GRAM+, DNA binding protein; 1.70A {Streptococcus pneumoniae}
Probab=100.00 E-value=1.2e-39 Score=267.63 Aligned_cols=125 Identities=14% Similarity=0.204 Sum_probs=112.7
Q ss_pred HhccCCCcchHHHHHHHHHHHHHHhcCCceEEecCCCHHHHHHHHHHhhccCCceEEEeCCCcccceeEEEeeCCCCCCC
Q 028677 68 LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSVGHPEALTS 147 (205)
Q Consensus 68 ll~~~~~~e~~e~v~rilD~~~~a~k~~~~~~TdFLdP~e~~i~~~il~~~~di~~~~~GGY~~AERkri~i~~pe~~~~ 147 (205)
+++|+. ++++++++|++||+++|.++|++++|+||||+||+++++++++. ++++.++|||++|||+|++++|+++..+
T Consensus 2 ~~~hf~-~~e~~~i~~~~d~~~~a~~~~~~~~T~FL~p~e~~i~~~i~~~~-~~~~~~~GGy~~AER~r~~i~p~~~~~~ 79 (165)
T 2fph_X 2 IYQHFS-IEDRPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTY-GLACSSSGEFVSSEYVRVLLYPDYFQPE 79 (165)
T ss_dssp CCCCCC-GGGHHHHHHHHHHHHHHHHHTSCEECCCBCHHHHHHHHHHHHHT-TCEEEEGGGTSCCSSBCEEEECTTCCCC
T ss_pred hhhhcC-hhhHHHHHHHHHHHHHHHHhCCEEECCCCCHHHHHHHHHHHhcc-CcEEEEeCCCcHHheeEEEEecccccCc
Confidence 578877 56779999999999999999999999999999999999999886 7999999999999999998855444323
Q ss_pred Cc-CceEEEEeecCCCCCCCChhhHHHHHHc-CCCCCCCcccEEEeCCe
Q 028677 148 DP-DIVAALSITGNFGFQPCSHGDFLGSILG-TGIAREKIGDIILQNKG 194 (205)
Q Consensus 148 ~~-~~I~~L~I~~n~kF~~lsHRDfLGALmg-LGIkREkIGDIlv~~~~ 194 (205)
.. .+|++++|++|++|.+++|||||||||| |||+||++|||++++++
T Consensus 80 ~~d~~i~~l~i~~~~kF~~l~Hrd~LGaLm~~LGI~Re~iGDI~v~~~~ 128 (165)
T 2fph_X 80 FSDFEISLQEIVYSNKFEYLTHAKILGTVINQLGIERKLFGDILVDEER 128 (165)
T ss_dssp GGGGCEEEEEEESCCCCHHHHHHHHHSCSSSCCCCCGGGEEEEECSSSC
T ss_pred ccCCceEEEEEecccccccCCHHHHHHHHHHhcCCCHhhcCCEEEECCE
Confidence 33 4699999999999999999999999999 99999999999999887
No 2
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=84.56 E-value=0.51 Score=32.36 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=24.7
Q ss_pred CCCChhhHHHHHHc-CCCCCCCcccEEEeCCe
Q 028677 164 QPCSHGDFLGSILG-TGIAREKIGDIILQNKG 194 (205)
Q Consensus 164 ~~lsHRDfLGALmg-LGIkREkIGDIlv~~~~ 194 (205)
+.+..+|++|+|-+ .||.++.||+|-+.++.
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~ 42 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDNA 42 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSSC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCCc
Confidence 56789999999997 79999999999888775
No 3
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=65.07 E-value=20 Score=30.30 Aligned_cols=60 Identities=12% Similarity=0.026 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhcCCceEEecCCCHHHHHHHHHHhhccCCceEEEeCCCcccceeEEEe
Q 028677 78 IEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV 139 (205)
Q Consensus 78 ~e~v~rilD~~~~a~k~~~~~~TdFLdP~e~~i~~~il~~~~di~~~~~GGY~~AERkri~i 139 (205)
+.+..-....+++|.++++++.-+=++|.|+.++-..+...+++.....| ++..|+.++.
T Consensus 148 e~L~~lA~~~A~kV~~tg~~v~L~PM~~~ERriIH~al~~~~~V~T~SeG--eep~R~VVI~ 207 (225)
T 3gku_A 148 ETLETLAKNIAYKVKRTKRSVSLEPMNPYERRIIHAALQNDKYVVTRSDG--EEPFRHVIIS 207 (225)
T ss_dssp HHHHHHHHHHHHHHHHHCSCEECCCCCHHHHHHHHHHTTTCSSEEEEEES--STTSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCEEEccCCCHHHHHHHHHHHccCCCcEEEEee--cCCCeEEEEE
Confidence 34455566677888899999999999999999999999888899888888 5566766643
No 4
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=34.39 E-value=1.3e+02 Score=21.71 Aligned_cols=55 Identities=7% Similarity=-0.006 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcCCceEEecCCCHHHHHHHHHHhhccCCceEEEeCCCcccceeEEEe
Q 028677 81 VKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRLSV 139 (205)
Q Consensus 81 v~rilD~~~~a~k~~~~~~TdFLdP~e~~i~~~il~~~~di~~~~~GGY~~AERkri~i 139 (205)
+..++...... .+....+-.=|++.|+..+-++..++ ++.-...| ++.+|+..+.
T Consensus 21 i~~~l~~F~~~-~~~~l~FP~sLs~~eR~~IH~lA~~~-GL~h~S~G--~G~~R~l~V~ 75 (86)
T 1msz_A 21 FRAMIVEFMAS-KKMQLEFPPSLNSHDRLRVHQIAEEH-GLRHDSSG--EGKRRFITVS 75 (86)
T ss_dssp HHHHHHHHHHH-TCSEEEECTTCCSHHHHHHHHHHHHT-TEEEEEEC--SSSCCEEEEE
T ss_pred HHHHHHHHhcC-CCcEEEcCCCCCHHHHHHHHHHHHHc-CCCcceee--CCCCeEEEEE
Confidence 44444444432 44667777889999999998888886 88888888 6778877654
No 5
>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=19.50 E-value=2.6e+02 Score=20.09 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=36.8
Q ss_pred HhcCCce-EEecCCCHHHHHHHHHHhhccCCceEEEeCCCcccc-eeEEEeeCCCC
Q 028677 91 ASSRREV-LHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE-RCRLSVGHPEA 144 (205)
Q Consensus 91 a~k~~~~-~~TdFLdP~e~~i~~~il~~~~di~~~~~GGY~~AE-Rkri~i~~pe~ 144 (205)
|.+.+++ +.-+=++|.+..++-.++.. .++.-..+| ++.. |.++ |.+.+.
T Consensus 24 a~~~g~~~v~L~PM~~~eRriIH~~l~~-~gl~S~S~G--eep~~R~Vv-I~~~~~ 75 (94)
T 2cpm_A 24 IQDSGQIKKKFQPMNKIERSILHDVVEV-AGLTSFSFG--EDDDCRYVM-IFKKEF 75 (94)
T ss_dssp HHCSSCCEEECCCCCSSHHHHHHHHHHH-HTCEEEEEC--SSSSCCEEE-EECSTT
T ss_pred HHhcCCCceEeCCCCHHHHHHHHHHHHH-CCCEEEEec--CCCCceEEE-EEeCCC
Confidence 4566665 66678999999999999988 799999988 5565 5555 435443
No 6
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=18.92 E-value=14 Score=26.23 Aligned_cols=13 Identities=46% Similarity=0.843 Sum_probs=9.2
Q ss_pred HHHcCCCCCCCcccEE
Q 028677 174 SILGTGIAREKIGDII 189 (205)
Q Consensus 174 ALmgLGIkREkIGDIl 189 (205)
.|..||| || |||+
T Consensus 43 ~Lr~LGi-~e--GDII 55 (72)
T 3idw_A 43 MLRTLGL-RE--GDIV 55 (72)
T ss_dssp HHHHTTC-CH--HHHH
T ss_pred HHHHcCC-ch--hhHH
Confidence 3557999 44 9985
No 7
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=18.60 E-value=79 Score=27.17 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhcCCceEEecC--CCHHHHH-----HHHHHhhccCCceEEEeCCC
Q 028677 78 IEEVKHILEMARRASSRREVLHSDF--LTPPVLK-----ESMMALEKLADVKAVAQGGY 129 (205)
Q Consensus 78 ~e~v~rilD~~~~a~k~~~~~~TdF--LdP~e~~-----i~~~il~~~~di~~~~~GGY 129 (205)
+..+.+++..++...++....+++| .+|.|++ ..+.|..+.-+..+.-||.=
T Consensus 22 RSeIN~~i~~a~~~~~~~g~~LPpfa~wtp~ew~~~~~~e~~ei~d~~LGWDITDfG~g 80 (246)
T 3kmh_A 22 RSAINDILGHTRQFFSQHDVHLPPFASFSPAQWQQLDTAAWEEVFDLKLGWDVTAFGRN 80 (246)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCGGGGCCHHHHHTSCTTTTHHHHHTTCEEEEECTTSS
T ss_pred HHHHHHHHHHHHHHHHHCCcccCCcccCCHHHHhhcCchhHHHHHhcccCcEEecCCCC
Confidence 3467778888888888889999997 8899988 55556554446666666643
No 8
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=18.34 E-value=40 Score=20.32 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHhhccCCceEEEeC
Q 028677 104 TPPVLKESMMALEKLADVKAVAQG 127 (205)
Q Consensus 104 dP~e~~i~~~il~~~~di~~~~~G 127 (205)
+|.|.+.++...++ .++.+.|||
T Consensus 13 tpeelkklkeeakk-anirvtfwg 35 (36)
T 2ki0_A 13 TPEELKKLKEEAKK-ANIRVTFWG 35 (36)
T ss_dssp CHHHHHHHHHHHHH-HCCCCCBCC
T ss_pred CHHHHHHHHHHHHh-ccEEEEeec
Confidence 46666666555544 356666666
No 9
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=16.70 E-value=42 Score=20.21 Aligned_cols=17 Identities=24% Similarity=0.665 Sum_probs=14.6
Q ss_pred hhhHHHHHHcCCCCCCC
Q 028677 168 HGDFLGSILGTGIAREK 184 (205)
Q Consensus 168 HRDfLGALmgLGIkREk 184 (205)
.+..|+||++-|+.+|.
T Consensus 9 Q~eLL~aLL~SGlsKe~ 25 (32)
T 1g2y_A 9 QTEMLAALLESGLSKEA 25 (32)
T ss_dssp HHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHcCCcHHH
Confidence 46789999999998874
No 10
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=12.63 E-value=1.1e+02 Score=22.49 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhcCC--ceEEecCCCHHHHHHHHHHh
Q 028677 78 IEEVKHILEMARRASSRR--EVLHSDFLTPPVLKESMMAL 115 (205)
Q Consensus 78 ~e~v~rilD~~~~a~k~~--~~~~TdFLdP~e~~i~~~il 115 (205)
.+....+.|.+....... ...+.+.|||+|++++...+
T Consensus 9 ~~~~~~l~~~i~~~~~~~~l~~~l~~lLT~~Er~~l~~R~ 48 (101)
T 1jhg_A 9 HQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRV 48 (101)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345667777777765554 55677889999998775554
Done!