Query 028677
Match_columns 205
No_of_seqs 116 out of 486
Neff 5.0
Searched_HMMs 13730
Date Tue Mar 26 01:42:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028677.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028677hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x2ga1 d.224.1.3 (A:247-337) 24.3 23 0.0016 23.7 2.6 22 96-117 32-53 (91)
2 d1a0ca_ c.1.15.3 (A:) D-xylose 20.5 1E+02 0.0073 26.4 6.7 58 76-133 113-194 (437)
3 d1jhga_ a.4.12.1 (A:) Trp repr 18.8 24 0.0018 24.6 1.8 37 79-115 10-48 (101)
4 d2dlqa1 g.37.1.1 (A:93-118) GL 14.1 23 0.0017 18.6 0.5 9 195-203 3-11 (26)
5 d3beda1 c.54.1.1 (A:1-132) PTS 11.4 2.3E+02 0.017 19.3 5.6 78 50-129 13-92 (132)
6 d1z3ix1 c.37.1.19 (X:390-735) 10.7 90 0.0065 25.0 3.5 54 82-137 107-160 (346)
7 d1pdoa_ c.54.1.1 (A:) IIA doma 10.4 1.7E+02 0.013 19.6 4.6 73 50-122 12-87 (129)
8 d1isua_ g.35.1.1 (A:) HIPIP (h 9.1 30 0.0022 22.1 -0.2 12 193-204 18-29 (62)
9 d1s2ma2 c.37.1.19 (A:252-422) 8.7 1.9E+02 0.014 20.0 4.4 56 80-137 19-74 (171)
10 d1skza2 g.3.15.1 (A:59-110) Fa 8.6 26 0.0019 21.2 -0.6 10 178-187 36-45 (52)
No 1
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.25 E-value=23 Score=23.70 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=17.6
Q ss_pred ceEEecCCCHHHHHHHHHHhhc
Q 028677 96 EVLHSDFLTPPVLKESMMALEK 117 (205)
Q Consensus 96 ~~~~TdFLdP~e~~i~~~il~~ 117 (205)
..+++|||+|.....++..+.+
T Consensus 32 ~~i~gDfl~~~~i~~le~~L~G 53 (91)
T d1x2ga1 32 AQVFTDSLNPAPLEALAGRLQG 53 (91)
T ss_dssp EEEEECCSCCHHHHHHHHHHTT
T ss_pred EEEEcCCCCcHHHHHHHHHHcC
Confidence 4678999999998888776643
No 2
>d1a0ca_ c.1.15.3 (A:) D-xylose isomerase {Clostridium thermosulfurogenes, also known as Thermoanaerobacter thermosulfurigenes [TaxId: 33950]}
Probab=20.50 E-value=1e+02 Score=26.37 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHHHHHhcCCceE---Eec--CCCHH-------------------HHHHHHHHhhccCCceEEEeCCCcc
Q 028677 76 NAIEEVKHILEMARRASSRREVL---HSD--FLTPP-------------------VLKESMMALEKLADVKAVAQGGYPQ 131 (205)
Q Consensus 76 e~~e~v~rilD~~~~a~k~~~~~---~Td--FLdP~-------------------e~~i~~~il~~~~di~~~~~GGY~~ 131 (205)
|....++++.|.++++.+...+. .|. |-+|+ +.+.+..+...+..-.+++|||+++
T Consensus 113 e~~~~l~~i~~~~k~~~~~tG~kl~~~t~nlF~~p~y~~Ga~TnPD~~Vra~A~~~vk~aid~a~~LGa~~~vlWgGreG 192 (437)
T d1a0ca_ 113 ETNKNLDTIVAMIKDYLKTSKTKVLWGTANLFSNPRFVHGASTSCNADVFAYSAAQVKKALEITKELGGENYVFWGGREG 192 (437)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCEEEEEECCCSSSGGGTTCSTTCSCHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeeccccccceeccceecCcccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCcc
Confidence 44455788888888876654222 222 66652 2233344446677778999999988
Q ss_pred cc
Q 028677 132 AE 133 (205)
Q Consensus 132 AE 133 (205)
.|
T Consensus 193 yd 194 (437)
T d1a0ca_ 193 YE 194 (437)
T ss_dssp ES
T ss_pred cc
Confidence 77
No 3
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]}
Probab=18.84 E-value=24 Score=24.57 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhcCC--ceEEecCCCHHHHHHHHHHh
Q 028677 79 EEVKHILEMARRASSRR--EVLHSDFLTPPVLKESMMAL 115 (205)
Q Consensus 79 e~v~rilD~~~~a~k~~--~~~~TdFLdP~e~~i~~~il 115 (205)
+...++++.+.++.... ..+++|.++|.|+..+.+.+
T Consensus 10 ~~w~~f~~ll~~~~~~~~~~~fl~dLlT~~E~~~la~R~ 48 (101)
T d1jhga_ 10 QEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRV 48 (101)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45677888887776665 66899999999987664443
No 4
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.07 E-value=23 Score=18.65 Aligned_cols=9 Identities=44% Similarity=1.017 Sum_probs=7.1
Q ss_pred EEecccccc
Q 028677 195 FLCSGCLQY 203 (205)
Q Consensus 195 ~~~~~~~~~ 203 (205)
.+||.|.|-
T Consensus 3 ykcsscsqq 11 (26)
T d2dlqa1 3 YKCSSCSQQ 11 (26)
T ss_dssp EECSSSCCE
T ss_pred CcccHHHHH
Confidence 489999874
No 5
>d3beda1 c.54.1.1 (A:1-132) PTS system, IIA subunit {Enterococcus faecalis [TaxId: 1351]}
Probab=11.36 E-value=2.3e+02 Score=19.33 Aligned_cols=78 Identities=13% Similarity=0.174 Sum_probs=44.3
Q ss_pred cccchhhHHHhhccchHH--HhccCCCcchHHHHHHHHHHHHHHhcCCceEEecCCCHHHHHHHHHHhhccCCceEEEeC
Q 028677 50 TASGIRHLIQAVKGNFDD--LLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQG 127 (205)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~--ll~~~~~~e~~e~v~rilD~~~~a~k~~~~~~TdFLdP~e~~i~~~il~~~~di~~~~~G 127 (205)
.|+|.=.+++.+-++-+. .+....+....++.+++.+.++........++||=+--.-...+...+.+.+++ ....
T Consensus 13 ~A~gl~~s~~~i~G~~~~i~~i~l~~~~~~~~~~~~l~~~~~~~~~~~vliltDl~GGTP~N~a~~~~~~~~~v--~vis 90 (132)
T d3beda1 13 MAEETLASTQMIVGELADAAIVSMTAEDGLSGTQAKLAAILKEAGNVPTLVLADLKGGTPCNVAMMAMGTYPQL--RVVA 90 (132)
T ss_dssp HHHHHHHHHHHHHCTTCCCEEEEECTTTHHHHHHHHHHHHHHHHCSCCEEEEESSTTSHHHHHHHHHTTTCTTE--EEEE
T ss_pred HHHHHHHHHHHHcCCcCCeEEEEcCCCCCHHHHHHHHHHHHhhCCCCCEEEEEecccCChhHHHHHHHhcCCCE--EEEE
Confidence 356666777777554332 244444444445667777766666445678999977644344444555444444 3344
Q ss_pred CC
Q 028677 128 GY 129 (205)
Q Consensus 128 GY 129 (205)
|.
T Consensus 91 G~ 92 (132)
T d3beda1 91 GL 92 (132)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 6
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=10.65 E-value=90 Score=25.03 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCCceEEecCCCHHHHHHHHHHhhccCCceEEEeCCCcccceeEE
Q 028677 82 KHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137 (205)
Q Consensus 82 ~rilD~~~~a~k~~~~~~TdFLdP~e~~i~~~il~~~~di~~~~~GGY~~AERkri 137 (205)
.++++........+..++|.|..- +.+++..+....--.+...|+.+.+||..+
T Consensus 107 ~~ll~~~~~~~g~KvlIFs~~~~~--ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~ 160 (346)
T d1z3ix1 107 DYILAMTRTTTSDKVVLVSNYTQT--LDLFEKLCRNRRYLYVRLDGTMSIKKRAKI 160 (346)
T ss_dssp HHHHHHHHHHCCCEEEEEESCHHH--HHHHHHHHHHHTCCEEEECSSCCHHHHHHH
T ss_pred HHHHHHHHHhcCCceeEEeehhhh--hHHHHHHHhhhhccccccccchhHHHHHHH
Confidence 344443333323345566665533 334445554432233445566665555544
No 7
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]}
Probab=10.38 E-value=1.7e+02 Score=19.64 Aligned_cols=73 Identities=8% Similarity=0.069 Sum_probs=42.9
Q ss_pred cccchhhHHHhhccchHHH--hccCCCcchHHHHHHHHHHHHHHhc-CCceEEecCCCHHHHHHHHHHhhccCCce
Q 028677 50 TASGIRHLIQAVKGNFDDL--LKGVGDKNAIEEVKHILEMARRASS-RREVLHSDFLTPPVLKESMMALEKLADVK 122 (205)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l--l~~~~~~e~~e~v~rilD~~~~a~k-~~~~~~TdFLdP~e~~i~~~il~~~~di~ 122 (205)
.|+|...+++.+.++.+.+ +....+....++.+++.+.++.... ....++||-+.-.-...+.+.+...+++.
T Consensus 12 ~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~vliltDl~GGsp~n~~~~~~~~~~~v~ 87 (129)
T d1pdoa_ 12 AAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDKEHYE 87 (129)
T ss_dssp HHHHHHHHHHHHHCCCSSEEEECBCTTCCHHHHHHHHHHHHTTSCCTTCEEEEESSTTSHHHHHHHHHHTTCTTEE
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEccCCCCHHHHHHHHHHHHHhcCCCCCEEEEEeccccchhHHHHHHhccCCCEE
Confidence 4778888888887654432 3333344445667777777766533 34789999866443343334443333443
No 8
>d1isua_ g.35.1.1 (A:) HIPIP (high potential iron protein) {Rhodocyclus tenuis [TaxId: 1066]}
Probab=9.07 E-value=30 Score=22.12 Aligned_cols=12 Identities=50% Similarity=1.121 Sum_probs=9.4
Q ss_pred CeEEeccccccc
Q 028677 193 KGFLCSGCLQYT 204 (205)
Q Consensus 193 ~~~~~~~~~~~~ 204 (205)
++-+|++|.||.
T Consensus 18 ~gk~C~~Ca~fi 29 (62)
T d1isua_ 18 NGKKCSGCAQFV 29 (62)
T ss_dssp TTBCGGGBTTEE
T ss_pred CCCccccceeec
Confidence 467899999873
No 9
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.70 E-value=1.9e+02 Score=19.97 Aligned_cols=56 Identities=7% Similarity=0.088 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCceEEecCCCHHHHHHHHHHhhccCCceEEEeCCCcccceeEE
Q 028677 80 EVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAERCRL 137 (205)
Q Consensus 80 ~v~rilD~~~~a~k~~~~~~TdFLdP~e~~i~~~il~~~~di~~~~~GGY~~AERkri 137 (205)
.+..+.+.++........+++++ ....+.+...+.....--..+.|+.+..||..+
T Consensus 19 K~~~L~~ll~~~~~~k~iVF~~~--~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~ 74 (171)
T d1s2ma2 19 KLHCLNTLFSKLQINQAIIFCNS--TNRVELLAKKITDLGYSCYYSHARMKQQERNKV 74 (171)
T ss_dssp HHHHHHHHHHHSCCSEEEEECSS--HHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEee--eehhhHhHHhhhcccccccccccccchhhhhhh
Confidence 34444555544444445555543 344445555554443333345566666666544
No 10
>d1skza2 g.3.15.1 (A:59-110) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
Probab=8.62 E-value=26 Score=21.15 Aligned_cols=10 Identities=40% Similarity=0.876 Sum_probs=7.7
Q ss_pred CCCCCCCccc
Q 028677 178 TGIAREKIGD 187 (205)
Q Consensus 178 LGIkREkIGD 187 (205)
.|++|+|+|=
T Consensus 36 nglkrdklgc 45 (52)
T d1skza2 36 NGLKRDKLGC 45 (52)
T ss_dssp SCEEECTTSC
T ss_pred CcccccccCc
Confidence 4788888884
Done!