Query 028679
Match_columns 205
No_of_seqs 183 out of 1288
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 01:45:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 100.0 1.3E-33 4.5E-38 240.9 12.0 125 45-174 1-232 (248)
2 1kca_A Repressor protein CI; g 99.4 2E-12 6.9E-17 96.9 11.2 91 50-174 13-109 (109)
3 1umu_A UMUD'; induced mutagene 99.3 1.7E-11 5.9E-16 92.3 10.0 89 49-171 26-115 (116)
4 1jhf_A LEXA repressor; LEXA SO 99.1 6.7E-10 2.3E-14 90.5 10.8 88 50-170 110-199 (202)
5 2hnf_A Repressor protein CI101 99.0 2.7E-09 9.2E-14 82.1 10.4 83 50-166 44-132 (133)
6 3bdn_A Lambda repressor; repre 98.9 2.3E-09 7.8E-14 88.7 7.9 91 50-174 140-236 (236)
7 3k2z_A LEXA repressor; winged 98.8 5.1E-08 1.8E-12 79.3 11.8 86 50-169 109-195 (196)
8 2fjr_A Repressor protein CI; g 97.1 0.0023 7.9E-08 50.6 8.4 77 57-170 112-188 (189)
9 3v2d_O 50S ribosomal protein L 79.1 8.5 0.00029 28.9 7.4 85 49-157 18-105 (122)
10 1w4s_A Polybromo, polybromo 1 74.9 4.5 0.00015 31.6 5.2 49 60-110 5-53 (174)
11 3r8s_K 50S ribosomal protein L 74.5 10 0.00035 28.5 6.8 87 49-158 18-107 (122)
12 3bbo_M Ribosomal protein L14; 72.7 12 0.00041 28.0 6.7 86 49-158 18-106 (121)
13 1p3h_A 10 kDa chaperonin; beta 67.2 22 0.00075 25.6 6.9 92 64-163 5-97 (99)
14 1whi_A Ribosomal protein L14; 66.3 21 0.00071 26.7 6.9 85 49-157 18-105 (122)
15 3nx6_A 10KDA chaperonin; bacte 56.2 16 0.00055 26.1 4.5 91 64-162 3-93 (95)
16 1pcq_O Groes protein; chaperon 56.1 17 0.00059 26.1 4.6 41 64-109 3-43 (97)
17 1we3_O CPN10(groes); chaperoni 54.0 24 0.00082 25.4 5.1 92 64-163 8-99 (100)
18 3u5e_V L17A, YL32, 60S ribosom 39.8 77 0.0026 24.1 6.2 28 126-158 95-122 (137)
19 2pp6_A Gifsy-2 prophage ATP-bi 35.1 55 0.0019 23.7 4.5 28 81-112 61-88 (102)
20 1vq8_K 50S ribosomal protein L 29.1 1.7E+02 0.0058 22.0 6.6 28 126-158 90-117 (132)
21 3j21_J 50S ribosomal protein L 23.2 1.9E+02 0.0064 22.0 5.9 28 126-158 99-126 (141)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=100.00 E-value=1.3e-33 Score=240.92 Aligned_cols=125 Identities=22% Similarity=0.363 Sum_probs=106.9
Q ss_pred hhceeEEEEEecCCCcccccccCCcEEEEEecCCC-----------CCCCCccCeEEEEecCCCCCceEEEEEEEecCce
Q 028679 45 FQGKLTYLYGNKGDQMAPVMGGLGGTLLVRKLPAA-----------DPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYE 113 (205)
Q Consensus 45 ~~~~~~~i~~V~g~SM~PTL~~~GD~Vlv~k~~~~-----------~~~~~~rGDIVvf~~P~~~~~~~VKRVialpGd~ 113 (205)
+..|+++++.|+|+||+|||+ .||+|+++|+.|. ....+++||||+|+.|.+++..+||||+|+|||+
T Consensus 1 ir~fv~~~~~v~g~SM~Ptl~-~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD~ 79 (248)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLL-IGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDK 79 (248)
T ss_dssp -CBCCEEEEECCSCTTTTTSC-TTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTCE
T ss_pred CeEEEEEEEEecccccccccc-CCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCCE
Confidence 356899999999999999999 7999999997541 0257999999999999877889999999999999
Q ss_pred EEecCC-------------------CC-----------------------------------------------------
Q 028679 114 MVSTDE-------------------KD----------------------------------------------------- 121 (205)
Q Consensus 114 V~~~~~-------------------~~----------------------------------------------------- 121 (205)
|++.++ ..
T Consensus 80 v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~e~l~~~~ 159 (248)
T 1b12_A 80 VTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVT 159 (248)
T ss_dssp EEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEEEETTEE
T ss_pred EEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhhHHhhhcCcc
Confidence 987654 00
Q ss_pred ------------------------CceeeeCCeEEEEeCCCCCCCCCCCCCCccccccCCCEEEEEEEEEecCCCCC
Q 028679 122 ------------------------EPFVLDKDECWVLADNENMKPKEANDSRTFGPVPMRNIVGRAIYCLRTAVDHG 174 (205)
Q Consensus 122 ------------------------~~~~vp~g~~~vlGDN~~~~~~~S~DSR~~GpV~~~~IiGkv~~~~~p~~~~g 174 (205)
.+++||+|+|||||||+. +|.|||+||+||.++|+|||.+++||+.+.+
T Consensus 160 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~----nS~DSR~~G~Vp~~~IvGka~~i~~s~~~~~ 232 (248)
T 1b12_A 160 HRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRD----NSADSRYWGFVPEANLVGRATAIWMSFDKQE 232 (248)
T ss_dssp EEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTT----SCCCHHHHCCEEGGGEEEEEEEEEEEBC---
T ss_pred ceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCc----ccCCCCcccccCHHHeEEEEEEEEEeCCccc
Confidence 024899999999999999 9999999999999999999999999988653
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.41 E-value=2e-12 Score=96.93 Aligned_cols=91 Identities=18% Similarity=0.267 Sum_probs=71.6
Q ss_pred EEEEEecCCCcc------cccccCCcEEEEEecCCCCCCCCccCeEEEEecCCCCCceEEEEEEEecCceEEecCCCCCc
Q 028679 50 TYLYGNKGDQMA------PVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEP 123 (205)
Q Consensus 50 ~~i~~V~g~SM~------PTL~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~P~~~~~~~VKRVialpGd~V~~~~~~~~~ 123 (205)
+....|.|+||+ |+|. +||+|++++. ..++.||+|++..+. +..++||+...+
T Consensus 13 ~f~~~V~GdSM~~~~g~~p~i~-~Gd~v~Vd~~-----~~~~~Gdivv~~~~~--~~~~vKrl~~~~------------- 71 (109)
T 1kca_A 13 AFWLEVEGNSMTAPTGSKPSFP-DGMLILVDPE-----QAVEPGDFCIARLGG--DEFTFKKLIRDS------------- 71 (109)
T ss_dssp CEEEECCSSTTCCCTTCSSCCC-TTCEEEEETT-----SCCCTTCEEEEECST--TCEEEEEEEEET-------------
T ss_pred EEEEEEeCcCcCCCCCCCCeeC-CCCEEEEecC-----CcCCCCCEEEEEECC--CeEEEEEEEEeC-------------
Confidence 457899999999 9999 8999999974 468999999999754 468999998743
Q ss_pred eeeeCCeEEEEeCCCCCCCCCCCCCCccccccCCCEEEEEEEEEecCCCCC
Q 028679 124 FVLDKDECWVLADNENMKPKEANDSRTFGPVPMRNIVGRAIYCLRTAVDHG 174 (205)
Q Consensus 124 ~~vp~g~~~vlGDN~~~~~~~S~DSR~~GpV~~~~IiGkv~~~~~p~~~~g 174 (205)
|.+++.+||+.. .....- ..-+|+|+|++.+||+..||
T Consensus 72 -----~~~~L~s~N~~y------~~~~~~--~~~~IiG~Vv~~~~~~~~~~ 109 (109)
T 1kca_A 72 -----GQVFLQPLNPQY------PMIPCN--ESCSVVGKVIASQWPEETFG 109 (109)
T ss_dssp -----TEEEEECSSTTS------CCEECC--TTCEEEEEEEEEECCGGGGC
T ss_pred -----CEEEEEECCCCC------CCEEcC--CCcEEEEEEEEEEeCHHHcC
Confidence 478899999852 111111 34689999999999987765
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=99.29 E-value=1.7e-11 Score=92.29 Aligned_cols=89 Identities=21% Similarity=0.297 Sum_probs=65.1
Q ss_pred eEEEEEecCCCccc-ccccCCcEEEEEecCCCCCCCCccCeEEEEecCCCCCceEEEEEEEecCceEEecCCCCCceeee
Q 028679 49 LTYLYGNKGDQMAP-VMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVLD 127 (205)
Q Consensus 49 ~~~i~~V~g~SM~P-TL~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~P~~~~~~~VKRVialpGd~V~~~~~~~~~~~vp 127 (205)
-+..+.|.|+||+| +|+ +||++++++. ..++.||+|++..+ +..++||+... +
T Consensus 26 ~~~~~~v~GdSM~p~~i~-~Gd~v~vd~~-----~~~~~gdivv~~~~---~~~~vKr~~~~-----------------~ 79 (116)
T 1umu_A 26 ATYFVKASGDSMIDGGIS-DGDLLIVDSA-----ITASHGDIVIAAVD---GEFTVKKLQLR-----------------P 79 (116)
T ss_dssp GEEEEECCSSTTGGGTCC-TTCEEEEETT-----SCCCTTCEEEEEET---TEEEEEEEECS-----------------S
T ss_pred CEEEEEECCCCcCCCCCC-CCCEEEEEcC-----CCCCCCCEEEEEEC---CEEEEEEEEeC-----------------C
Confidence 35689999999999 899 8999999974 36899999999873 46899999874 3
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCccccccCCCEEEEEEEEEecCC
Q 028679 128 KDECWVLADNENMKPKEANDSRTFGPVPMRNIVGRAIYCLRTAV 171 (205)
Q Consensus 128 ~g~~~vlGDN~~~~~~~S~DSR~~GpV~~~~IiGkv~~~~~p~~ 171 (205)
.+++.+||+. +.......-..-+|+|+|++.++.+.
T Consensus 80 --~~~L~s~N~~------y~~~~i~~~~~~~IiG~Vv~~~r~~r 115 (116)
T 1umu_A 80 --TVQLIPMNSA------YSPITISSEDTLDVFGVVIHVVKAAT 115 (116)
T ss_dssp --SCEEECSSTT------SCCEECCTTSCEEEEEEEEEEEC---
T ss_pred --cEEEECCCCC------CCCEEcCCCCeEEEEEEEEEEEEecC
Confidence 5778899975 11111111122479999999887654
No 4
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=99.08 E-value=6.7e-10 Score=90.49 Aligned_cols=88 Identities=26% Similarity=0.324 Sum_probs=65.0
Q ss_pred EEEEEecCCCcccc-cccCCcEEEEEecCCCCCCCCccCeEEEEecCCCCCceEEEEEEEecCceEEecCCCCCceeeeC
Q 028679 50 TYLYGNKGDQMAPV-MGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVLDK 128 (205)
Q Consensus 50 ~~i~~V~g~SM~PT-L~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~P~~~~~~~VKRVialpGd~V~~~~~~~~~~~vp~ 128 (205)
+....|.|+||+|+ |. +||+|++++. ..++.||+|++.. .+...+||+. .+|
T Consensus 110 ~~~~~v~GdSM~p~~i~-~Gd~v~vd~~-----~~~~~G~i~v~~~---~~~~~vKrl~-~~~----------------- 162 (202)
T 1jhf_A 110 DFLLRVSGMSMKDIGIM-DGDLLAVHKT-----QDVRNGQVVVARI---DDEVTVKRLK-KQG----------------- 162 (202)
T ss_dssp CEEEECCSSTTGGGTCC-TTCEEEEEEC-----SCCCTTSEEEEEE---TTEEEEEEEE-EET-----------------
T ss_pred EEEEEECCCCCCCCCCC-CCCEEEEecc-----CCcCCCeEEEEEE---CCEEEEEEEE-EeC-----------------
Confidence 46889999999999 99 8999999974 3688999999997 3578999998 444
Q ss_pred CeEEEEeCCCCCCCCCCCCCCcccc-ccCCCEEEEEEEEEecC
Q 028679 129 DECWVLADNENMKPKEANDSRTFGP-VPMRNIVGRAIYCLRTA 170 (205)
Q Consensus 129 g~~~vlGDN~~~~~~~S~DSR~~Gp-V~~~~IiGkv~~~~~p~ 170 (205)
|.+++.+||+. +....+.. -..-.|+|+|++.++..
T Consensus 163 ~~~~l~s~N~~------y~~~~~~~~~~~~~IiG~Vv~~~r~~ 199 (202)
T 1jhf_A 163 NKVELLPENSE------FKPIVVDLRQQSFTIEGLAVGVIRNG 199 (202)
T ss_dssp TEEEEECSSTT------CCCEEEETTTSCEEEEEEEEEEEEC-
T ss_pred CEEEEEECCCC------CCCEEccCCCCceEEEEEEEEEEEcc
Confidence 57788889875 11111110 01235999999988754
No 5
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=99.00 E-value=2.7e-09 Score=82.13 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=63.4
Q ss_pred EEEEEecCCCcc------cccccCCcEEEEEecCCCCCCCCccCeEEEEecCCCCCceEEEEEEEecCceEEecCCCCCc
Q 028679 50 TYLYGNKGDQMA------PVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEP 123 (205)
Q Consensus 50 ~~i~~V~g~SM~------PTL~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~P~~~~~~~VKRVialpGd~V~~~~~~~~~ 123 (205)
+...+|.|+||+ |+|. +||+|++++. ..++.||+|++.... +...+||+...+
T Consensus 44 ~f~~~V~GdSM~~~~g~~p~i~-~Gd~v~vd~~-----~~~~~Gdivv~~~~~--~~~~vKrl~~~~------------- 102 (133)
T 2hnf_A 44 AFWLEVEGNSMTTPTGSKTSFP-DGMLILVDPE-----QAVEPGDFCIARLGG--DEFTFAKLIRDS------------- 102 (133)
T ss_dssp CEEEECCSSTTCCC---CCCCC-TTCEEEEETT-----SCCCTTSEEEEEETT--TEEEEEEEEEET-------------
T ss_pred EEEEEEeCCCcCCCcCCCCccC-CCCEEEEccC-----CCCCCCCEEEEEECC--CEEEEEEEEEeC-------------
Confidence 468899999999 9999 8999999974 468899999998743 478999998642
Q ss_pred eeeeCCeEEEEeCCCCCCCCCCCCCCccccccCCCEEEEEEEE
Q 028679 124 FVLDKDECWVLADNENMKPKEANDSRTFGPVPMRNIVGRAIYC 166 (205)
Q Consensus 124 ~~vp~g~~~vlGDN~~~~~~~S~DSR~~GpV~~~~IiGkv~~~ 166 (205)
|.+++.+||+.. .....- ..-+|+|+|++.
T Consensus 103 -----~~~~L~s~N~~y------~~~~~~--~~~~IiG~Vv~~ 132 (133)
T 2hnf_A 103 -----GQVFLQPLNPQY------PMIPCN--ESCSVVGKVIAS 132 (133)
T ss_dssp -----TEEEEECSSTTS------CCEECS--TTEEEEEEEEEE
T ss_pred -----CeEEEEECCCCC------CCEEcC--CCCEEEEEEEEE
Confidence 478889999852 111111 345799999864
No 6
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.92 E-value=2.3e-09 Score=88.73 Aligned_cols=91 Identities=18% Similarity=0.269 Sum_probs=68.9
Q ss_pred EEEEEecCCCcc------cccccCCcEEEEEecCCCCCCCCccCeEEEEecCCCCCceEEEEEEEecCceEEecCCCCCc
Q 028679 50 TYLYGNKGDQMA------PVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEP 123 (205)
Q Consensus 50 ~~i~~V~g~SM~------PTL~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~P~~~~~~~VKRVialpGd~V~~~~~~~~~ 123 (205)
+....|.|+||+ |+|. +||+|+|++. ..++.||+|++... .+...+||+...+
T Consensus 140 ~~~l~V~GdSM~~~~g~~P~i~-~Gd~v~vd~~-----~~~~~g~ivv~~~~--~~~~~vKrl~~~~------------- 198 (236)
T 3bdn_A 140 AFWLEVEGNSMTAPTGSKPSFP-DGMLILVDPE-----QAVEPGDFCIARLG--GDEFTFKKLIRGS------------- 198 (236)
T ss_dssp CEEEECCSSSSCCCSSCSSCCC-SSCEEEECCS-----SCCCTTSEEEEEST--TTCCCCEEEECCS-------------
T ss_pred EEEEEEeCCCcCCCCCCCCcCC-CCCEEEECCC-----CCCCCCcEEEEEEC--CCeEEEEEEEEcC-------------
Confidence 467899999999 9999 7999999874 36889999999872 2467899998643
Q ss_pred eeeeCCeEEEEeCCCCCCCCCCCCCCccccccCCCEEEEEEEEEecCCCCC
Q 028679 124 FVLDKDECWVLADNENMKPKEANDSRTFGPVPMRNIVGRAIYCLRTAVDHG 174 (205)
Q Consensus 124 ~~vp~g~~~vlGDN~~~~~~~S~DSR~~GpV~~~~IiGkv~~~~~p~~~~g 174 (205)
|.+++.+||+.+ ....+- ..-.|+|+|+..+||...|+
T Consensus 199 -----~~~~L~s~N~~y------~~~~~~--~~~~IiG~Vv~~~~~~~~~~ 236 (236)
T 3bdn_A 199 -----GQVFLQPLNPQY------PMIPCN--ESCSVVGKVIASQWPEETFG 236 (236)
T ss_dssp -----SSCEEECSSTTS------CCBC----CCCEEEEEEEECCCCSSSCC
T ss_pred -----CcEEEEeCCCCC------CCeecC--CCcEEEEEEEEEEcCHHhcC
Confidence 456788999752 111110 34579999999999877664
No 7
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.80 E-value=5.1e-08 Score=79.34 Aligned_cols=86 Identities=22% Similarity=0.302 Sum_probs=65.5
Q ss_pred EEEEEecCCCc-ccccccCCcEEEEEecCCCCCCCCccCeEEEEecCCCCCceEEEEEEEecCceEEecCCCCCceeeeC
Q 028679 50 TYLYGNKGDQM-APVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVLDK 128 (205)
Q Consensus 50 ~~i~~V~g~SM-~PTL~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~P~~~~~~~VKRVialpGd~V~~~~~~~~~~~vp~ 128 (205)
+....|.|+|| +|++. +||+|++++. ..++.||+|++... +...+||+... +
T Consensus 109 ~f~l~v~GdSM~~p~i~-~GD~viv~~~-----~~~~~G~ivv~~~~---~~~~vKr~~~~------------------~ 161 (196)
T 3k2z_A 109 HFLLKVKGESMIEEHIC-DGDLVLVRRQ-----DWAQNGDIVAAMVD---GEVTLAKFYQR------------------G 161 (196)
T ss_dssp EEEEECCSSTTGGGTCC-TTCEEEEEEC-----SCCCTTCEEEEEET---TEEEEEEEEEE------------------T
T ss_pred EEEEEEeCCCcCCCCCC-CCCEEEEecc-----CcCCCCCEEEEEEC---CcEEEEEEEEE------------------C
Confidence 67899999999 69999 8999999984 46788999999873 47899999753 3
Q ss_pred CeEEEEeCCCCCCCCCCCCCCccccccCCCEEEEEEEEEec
Q 028679 129 DECWVLADNENMKPKEANDSRTFGPVPMRNIVGRAIYCLRT 169 (205)
Q Consensus 129 g~~~vlGDN~~~~~~~S~DSR~~GpV~~~~IiGkv~~~~~p 169 (205)
|.+++..+|+.. .....- -..-.|+|+|+.+++.
T Consensus 162 ~~~~L~~~N~~y------~~i~i~-~~~~~i~G~Vv~~~r~ 195 (196)
T 3k2z_A 162 DTVELRPANREM------SSMFFR-AEKVKILGKVVGVFRK 195 (196)
T ss_dssp TEEEEECSCTTS------CCEEEE-GGGCEEEEEEEEEEEE
T ss_pred CEEEEEECCCCC------CCEEec-CCCEEEEEEEEEEEEc
Confidence 578888999751 111110 1234799999998764
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=97.06 E-value=0.0023 Score=50.56 Aligned_cols=77 Identities=12% Similarity=0.088 Sum_probs=52.9
Q ss_pred CCCcccccccCCcEEEEEecCCCCCCCCccCeEEEEecCCCCCceEEEEEEEecCceEEecCCCCCceeeeCCeEEEEeC
Q 028679 57 GDQMAPVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVLDKDECWVLAD 136 (205)
Q Consensus 57 g~SM~PTL~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~P~~~~~~~VKRVialpGd~V~~~~~~~~~~~vp~g~~~vlGD 136 (205)
+++|...-. +||+|+|++- .+..|+++++.. .+...+||+.-.+| |.+.+..|
T Consensus 112 ~~~~~~v~~-~Gd~v~Vd~~------~~~~g~i~vv~~---~g~~~vKrl~~~~~-----------------~~i~L~s~ 164 (189)
T 2fjr_A 112 LTDGMAIRS-EGKIYFVDKQ------ASLSDGLWLVDI---KGAISIRELTKLPG-----------------RKLHVAGG 164 (189)
T ss_dssp CSSEEEEEE-TTEEEEEETT------CCSCSEEEEEEE---TTEEEEEEEEEETT-----------------TEEEEESS
T ss_pred CCCeEEEee-CCcEEEEEcC------CccCCCEEEEEe---CCeEEEEEEEECCC-----------------CEEEEEeC
Confidence 455555556 8999999962 366799999987 34789999988754 45667777
Q ss_pred CCCCCCCCCCCCCccccccCCCEEEEEEEEEecC
Q 028679 137 NENMKPKEANDSRTFGPVPMRNIVGRAIYCLRTA 170 (205)
Q Consensus 137 N~~~~~~~S~DSR~~GpV~~~~IiGkv~~~~~p~ 170 (205)
|+. -..+ ...=.|+|||++.+...
T Consensus 165 N~~----~~i~------~~~i~IiG~Vv~~~r~~ 188 (189)
T 2fjr_A 165 KVP----FECG------IDDIKTLGRVVGVYSEV 188 (189)
T ss_dssp SSC----EEEE------TTSSEEEEEEEEEEEEC
T ss_pred CCC----eEec------ccceEEEEEEEEEEEec
Confidence 753 1111 12336999999887653
No 9
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=79.12 E-value=8.5 Score=28.92 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=48.2
Q ss_pred eEEEEEecCCCcccccccCCcEEEEEecCCCCCCCCccCeEEE---EecCCCCCceEEEEEEEecCceEEecCCCCCcee
Q 028679 49 LTYLYGNKGDQMAPVMGGLGGTLLVRKLPAADPKRVSVGDVVV---MKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFV 125 (205)
Q Consensus 49 ~~~i~~V~g~SM~PTL~~~GD~Vlv~k~~~~~~~~~~rGDIVv---f~~P~~~~~~~VKRVialpGd~V~~~~~~~~~~~ 125 (205)
....+.|.|.|-...-. -||.+++.=-.......+++||++- ++.-. -++| ..|-.+.+
T Consensus 18 ~v~cI~Vlg~~~rr~a~-iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk-----~~rR---~dG~~i~F--------- 79 (122)
T 3v2d_O 18 KIMCIRVLKGSNAKYAT-VGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKK-----EIKR---PDGSAIRF--------- 79 (122)
T ss_dssp EEEEEEEESTTTCCCBC-TTCEEEEEEEEECSSSSSCTTCEEEEEEEECSS-----CEEC---TTSCEEEE---------
T ss_pred EEEEEEEeCCCCCcccC-CCCEEEEEEEEcCCCCccccCCEEEEEEEEeCC-----ccCC---CCCcEEEc---------
Confidence 35566777776666656 5888766521111123566777642 23210 0111 12333333
Q ss_pred eeCCeEEEEeCCCCCCCCCCCCCCccccccCC
Q 028679 126 LDKDECWVLADNENMKPKEANDSRTFGPVPMR 157 (205)
Q Consensus 126 vp~g~~~vlGDN~~~~~~~S~DSR~~GpV~~~ 157 (205)
.++.+-++.++. +..-+|-||||+++
T Consensus 80 -ddNa~Vlin~~~-----~p~GTrI~GpVarE 105 (122)
T 3v2d_O 80 -DDNAAVIINNQL-----EPRGTRVFGPVARE 105 (122)
T ss_dssp -SSCEEEEECTTS-----CBSSSCBCSCBCTH
T ss_pred -CCcEEEEECCCC-----CEeeeEEEccchHH
Confidence 456776776665 68999999999875
No 10
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=74.93 E-value=4.5 Score=31.65 Aligned_cols=49 Identities=10% Similarity=-0.024 Sum_probs=23.1
Q ss_pred cccccccCCcEEEEEecCCCCCCCCccCeEEEEecCCCCCceEEEEEEEec
Q 028679 60 MAPVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIE 110 (205)
Q Consensus 60 M~PTL~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~P~~~~~~~VKRVialp 110 (205)
.+|-.. ++++.....+.+ +...++.||.|.+..++.+...+|-||..+-
T Consensus 5 g~~~~~-~~~r~~y~~~~~-~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~ 53 (174)
T 1w4s_A 5 GSAGLS-SLHRTYSQDCSF-KNSMYHVGDYVYVEPAEANLQPHIVCIERLW 53 (174)
T ss_dssp -----------------------CCCTTCEEEECCSSTTSCCEEEEEEEEE
T ss_pred CCcccc-CCCcEEeEEEEE-CCEEEECCCEEEEeCCCCCCCCEEEEEEEEE
Confidence 346666 566666555444 3568999999999987655667888888763
No 11
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=74.50 E-value=10 Score=28.45 Aligned_cols=87 Identities=24% Similarity=0.347 Sum_probs=50.4
Q ss_pred eEEEEEecCCCcccccccCCcEEEEEecCCCCCCCCccCeEEE---EecCCCCCceEEEEEEEecCceEEecCCCCCcee
Q 028679 49 LTYLYGNKGDQMAPVMGGLGGTLLVRKLPAADPKRVSVGDVVV---MKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFV 125 (205)
Q Consensus 49 ~~~i~~V~g~SM~PTL~~~GD~Vlv~k~~~~~~~~~~rGDIVv---f~~P~~~~~~~VKRVialpGd~V~~~~~~~~~~~ 125 (205)
.+..+.|.|.|-...-. -||.+++.=-.......+++||++- ++.-. -++| ..|-.+.+
T Consensus 18 ~v~cI~Vlgg~~r~~a~-iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk-----~~rR---~dG~~i~F--------- 79 (122)
T 3r8s_K 18 RVMCIKVLGGSHRRYAG-VGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKK-----GVRR---PDGSVIRF--------- 79 (122)
T ss_dssp EEEEEEECSSSSCCCBC-TTCEEEEEEEEECTTSSSCTTCEEEEEEEECSS-----CEEC---TTSCEEEE---------
T ss_pred eEEEEEEeCCCCCCccc-CCCEEEEEEEEcCCCCccccCCEEEEEEEEeCC-----cCCC---CCCcEEEc---------
Confidence 45667777777666666 6888776521111124566777642 33211 0122 23433433
Q ss_pred eeCCeEEEEeCCCCCCCCCCCCCCccccccCCC
Q 028679 126 LDKDECWVLADNENMKPKEANDSRTFGPVPMRN 158 (205)
Q Consensus 126 vp~g~~~vlGDN~~~~~~~S~DSR~~GpV~~~~ 158 (205)
.++.+-++.++.. +..-+|-||||+++.
T Consensus 80 -ddNa~Vlin~~~g----~p~GTrI~GpVarEl 107 (122)
T 3r8s_K 80 -DGNACVLLNNNSE----QPIGTRIFGPVTREL 107 (122)
T ss_dssp -SSCEEEEEETTTE----EESCSCBCSCCCGGG
T ss_pred -CCceEEEEeCCCC----CEeeeEEEccccHHH
Confidence 5577777777733 578899999998764
No 12
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=72.75 E-value=12 Score=28.04 Aligned_cols=86 Identities=12% Similarity=0.168 Sum_probs=47.5
Q ss_pred eEEEEEecCCCcccccccCCcEEEEEecCCCCCCCCccCeEEE---EecCCCCCceEEEEEEEecCceEEecCCCCCcee
Q 028679 49 LTYLYGNKGDQMAPVMGGLGGTLLVRKLPAADPKRVSVGDVVV---MKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFV 125 (205)
Q Consensus 49 ~~~i~~V~g~SM~PTL~~~GD~Vlv~k~~~~~~~~~~rGDIVv---f~~P~~~~~~~VKRVialpGd~V~~~~~~~~~~~ 125 (205)
....+.|.|.+-.-.-. -||.+++.=-.......+++||++- ++.-. -++| ..|-.+.+
T Consensus 18 ~v~cI~Vlgg~~~r~a~-iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk-----~~rR---~dG~~i~F--------- 79 (121)
T 3bbo_M 18 ELMCIRIIGASNRRYAR-IGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCK-----ELKR---DNGMIIRY--------- 79 (121)
T ss_dssp EEEEEEECSSSCCCCCC-TTCEEEEEEEEECSSSSSCSSCEEEEEEEECSS-----CEEC---TTSCEECC---------
T ss_pred EEEEEEEcCCCCccccc-cCcEEEEEEEEccCCCccccCcEEEEEEEEecC-----cccc---CCCCEEEe---------
Confidence 35566777765555555 5888765521111124567777642 23210 0122 12333333
Q ss_pred eeCCeEEEEeCCCCCCCCCCCCCCccccccCCC
Q 028679 126 LDKDECWVLADNENMKPKEANDSRTFGPVPMRN 158 (205)
Q Consensus 126 vp~g~~~vlGDN~~~~~~~S~DSR~~GpV~~~~ 158 (205)
.++.+-++.++. +..-+|-||||+++.
T Consensus 80 -ddNa~Vlin~~g-----~p~GTrI~GPVarEl 106 (121)
T 3bbo_M 80 -DDNAAVIIDQEG-----NPKGTRIFGAIAREL 106 (121)
T ss_dssp -SSCEEEECCTTS-----SCSSSCCCSCCCGGG
T ss_pred -CCceEEEECCCC-----CEeEeEEEcCcCHHH
Confidence 456666666654 578899999999764
No 13
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=67.22 E-value=22 Score=25.59 Aligned_cols=92 Identities=10% Similarity=0.148 Sum_probs=47.7
Q ss_pred cccCCcEEEEEecCCCCCCCCccCeEEEEecCCCCCceEEEEEEEecCceEEecCC-CCCceeeeCCeEEEEeCCCCCCC
Q 028679 64 MGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDE-KDEPFVLDKDECWVLADNENMKP 142 (205)
Q Consensus 64 L~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~P~~~~~~~VKRVialpGd~V~~~~~-~~~~~~vp~g~~~vlGDN~~~~~ 142 (205)
|.|-+|+|++.+.. ...-..|-|++=.. ...++....|+|+.-.. .-.++ ...+..|..|.--+.+.....
T Consensus 5 i~PL~DRVlVk~~e---~e~kT~gGI~LP~s--akeKp~~G~VvAVG~G~-~~~~G~~~~p~~VkvGD~Vlf~ky~Gt-- 76 (99)
T 1p3h_A 5 IKPLEDKILVQANE---AETTTASGLVIPDT--AKEKPQEGTVVAVGPGR-WDEDGEKRIPLDVAEGDTVIYSKYGGT-- 76 (99)
T ss_dssp EEECTTEEEEEECC---CCCBCTTSCBCCCS--SCCSEEEEEEEEECCCE-ECSSSSCEECCSCCTTCEEEEECTTCE--
T ss_pred eEEeCCEEEEEEcc---ccccccceEEeCcc--cccCCceEEEEEECCCc-CcCCCCEEEccccCCCCEEEECCcCCe--
Confidence 55679999999874 23444566555221 13456677777773211 11222 223334555555555543320
Q ss_pred CCCCCCCccccccCCCEEEEE
Q 028679 143 KEANDSRTFGPVPMRNIVGRA 163 (205)
Q Consensus 143 ~~S~DSR~~GpV~~~~IiGkv 163 (205)
.--+|.-.|=.++.++|+|.+
T Consensus 77 evk~dgeey~i~re~DIlavi 97 (99)
T 1p3h_A 77 EIKYNGEEYLILSARDVLAVV 97 (99)
T ss_dssp EEEETTEEEEEEEGGGEEEEE
T ss_pred EEEECCEEEEEEEhHhEEEEe
Confidence 012444445566777777754
No 14
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=66.34 E-value=21 Score=26.73 Aligned_cols=85 Identities=22% Similarity=0.341 Sum_probs=47.1
Q ss_pred eEEEEEecCCCcccccccCCcEEEEEecCCCCCCCCccCeEEE---EecCCCCCceEEEEEEEecCceEEecCCCCCcee
Q 028679 49 LTYLYGNKGDQMAPVMGGLGGTLLVRKLPAADPKRVSVGDVVV---MKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFV 125 (205)
Q Consensus 49 ~~~i~~V~g~SM~PTL~~~GD~Vlv~k~~~~~~~~~~rGDIVv---f~~P~~~~~~~VKRVialpGd~V~~~~~~~~~~~ 125 (205)
....+.|.|.|-.-.-. -||.+++.=-.......+++||++- ++.-. -++| ..|-.+.+
T Consensus 18 ~v~cI~vlgg~~~r~a~-iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk-----~~rR---~dG~~i~F--------- 79 (122)
T 1whi_A 18 EVLVIKVLGGSGRRYAN-IGDVVVATVKDATPGGVVKKGQVVKAVVVRTKR-----GVRR---PDGSYIRF--------- 79 (122)
T ss_dssp EEEEEEECSSTTCCCBC-TTCEEEEEEEEECTTSSSCTTCEEEEEEEECSS-----CEEC---TTSCEECC---------
T ss_pred EEEEEEEcCCCcccccc-cCeEEEEEEEEecCCCccccccEEEEEEEEecC-----ceec---CCCCEEEe---------
Confidence 35566777766555555 5888765521111123566777643 22210 0122 12333333
Q ss_pred eeCCeEEEEeCCCCCCCCCCCCCCccccccCC
Q 028679 126 LDKDECWVLADNENMKPKEANDSRTFGPVPMR 157 (205)
Q Consensus 126 vp~g~~~vlGDN~~~~~~~S~DSR~~GpV~~~ 157 (205)
.++.+-++.++. +..-+|-||||+++
T Consensus 80 -ddNa~Vlin~~g-----~p~GTrI~GPVarE 105 (122)
T 1whi_A 80 -DENACVIIRDDK-----SPRGTRIFGPVARE 105 (122)
T ss_dssp -SSCEEEEECTTS-----CBSSSCBCSCBCTH
T ss_pred -CCceEEEECCCC-----CEeeeEEEccchHH
Confidence 556777776665 57889999999875
No 15
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=56.16 E-value=16 Score=26.11 Aligned_cols=91 Identities=11% Similarity=0.149 Sum_probs=34.9
Q ss_pred cccCCcEEEEEecCCCCCCCCccCeEEEEecCCCCCceEEEEEEEecCceEEecCCCCCceeeeCCeEEEEeCCCCCCCC
Q 028679 64 MGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVLDKDECWVLADNENMKPK 143 (205)
Q Consensus 64 L~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~P~~~~~~~VKRVialpGd~V~~~~~~~~~~~vp~g~~~vlGDN~~~~~~ 143 (205)
|.|-+|+|++.+.. ...-..|-|++=... ..++.-..|+|+.-.. ...++...+..+..|.--+.+..... .
T Consensus 3 i~PL~DRVlVk~~e---~e~kT~gGI~LP~~a--~eK~~~G~VvAVG~G~-~~~~G~~~p~~VkvGD~Vl~~ky~Gt--e 74 (95)
T 3nx6_A 3 IKPLHDRVVVKPIE---ADEVSAGGIVIPDSA--KEKSTKGEVVAIGAGK-PLDNGSLHAPVVKVGDKVIYGQYAGS--S 74 (95)
T ss_dssp CCCCTTEEEEEEC------------------------CEEEEEEEECSCE-ECTTSCEECCSCCTTCEEEECTTCSE--E
T ss_pred eEEcCCEEEEEEcc---ccccccceEEeCccc--cCCccccEEEEECCCe-ECCCCCEEccccCCCCEEEECCcCCe--E
Confidence 55679999999864 233445666653221 2345566666663111 11222222334444444444433210 0
Q ss_pred CCCCCCccccccCCCEEEE
Q 028679 144 EANDSRTFGPVPMRNIVGR 162 (205)
Q Consensus 144 ~S~DSR~~GpV~~~~IiGk 162 (205)
--+|...|=.++.++|+|+
T Consensus 75 vk~dg~ey~i~re~DILav 93 (95)
T 3nx6_A 75 YKSEGVEYKVLREDDILAV 93 (95)
T ss_dssp EEETTEEEEEEEGGGEEEE
T ss_pred EEECCEEEEEEEHHHEEEE
Confidence 1133444445555566654
No 16
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=56.10 E-value=17 Score=26.06 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=21.6
Q ss_pred cccCCcEEEEEecCCCCCCCCccCeEEEEecCCCCCceEEEEEEEe
Q 028679 64 MGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAI 109 (205)
Q Consensus 64 L~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~P~~~~~~~VKRVial 109 (205)
|.|-+|+|++.+... ..-..|-|++=.. ...++....|+|+
T Consensus 3 i~PL~DRVlVk~~e~---e~kT~gGI~LP~s--akeKp~~G~VvAV 43 (97)
T 1pcq_O 3 IRPLHDRVIVKRKEV---ETKSAGGIVLTGS--AAAKSTRGEVLAV 43 (97)
T ss_dssp EEECSSEEEEEECCT---TCTTTTSSCCCCC--CSCCCCEEEEEEE
T ss_pred ceEcCCEEEEEEccc---cccccceEEeCcc--cccCCcccEEEEE
Confidence 455789999998742 2333444444211 1233445555555
No 17
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=54.03 E-value=24 Score=25.45 Aligned_cols=92 Identities=13% Similarity=0.229 Sum_probs=48.7
Q ss_pred cccCCcEEEEEecCCCCCCCCccCeEEEEecCCCCCceEEEEEEEecCceEEecCCCCCceeeeCCeEEEEeCCCCCCCC
Q 028679 64 MGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVLDKDECWVLADNENMKPK 143 (205)
Q Consensus 64 L~~~GD~Vlv~k~~~~~~~~~~rGDIVvf~~P~~~~~~~VKRVialpGd~V~~~~~~~~~~~vp~g~~~vlGDN~~~~~~ 143 (205)
|.|-||+|++.+.. ...-..|-|++=.. ...++....|+|+.-.. ...++...+..|..|.--+.+..... .
T Consensus 8 i~PL~DRVlVk~~e---~e~kT~gGI~LP~s--akeKp~~G~VvAVG~G~-~~~~G~~~p~~VkvGD~Vlf~ky~Gt--e 79 (100)
T 1we3_O 8 IKPLGDRVVVKRIE---EEPKTKGGIVLPDT--AKEKPQKGKVIAVGTGR-VLENGQRVPLEVKEGDIVVFAKYGGT--E 79 (100)
T ss_dssp EEECTTCEEEEECC---CCSSCTTCCCCCTT--TSCCCSEEEESCCCCCE-ECTTSCEECCSCCTTCEEEECTTCSE--E
T ss_pred eEEeCCEEEEEEcc---ccccccceEEeCcc--cccCCcCCEEEEECCCc-CCCCCCEEeeecCCCCEEEECCCCCe--E
Confidence 77789999999874 23344555555321 12345566777763221 12333333344555555555443320 0
Q ss_pred CCCCCCccccccCCCEEEEE
Q 028679 144 EANDSRTFGPVPMRNIVGRA 163 (205)
Q Consensus 144 ~S~DSR~~GpV~~~~IiGkv 163 (205)
--+|.-.|=.++.++|+|.+
T Consensus 80 vk~dgeeyli~re~DIlavi 99 (100)
T 1we3_O 80 IEIDGEEYVILSERDLLAVL 99 (100)
T ss_dssp EECSSCEEEEECTTTEEEEE
T ss_pred EEECCEEEEEEEhHHEEEEe
Confidence 12455556567777777753
No 18
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=39.81 E-value=77 Score=24.08 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=20.5
Q ss_pred eeCCeEEEEeCCCCCCCCCCCCCCccccccCCC
Q 028679 126 LDKDECWVLADNENMKPKEANDSRTFGPVPMRN 158 (205)
Q Consensus 126 vp~g~~~vlGDN~~~~~~~S~DSR~~GpV~~~~ 158 (205)
..++.+-++.++. +..-+|-||||+++.
T Consensus 95 FddNA~Vlin~~g-----~p~GTrI~GPVarEl 122 (137)
T 3u5e_V 95 FEDNAGVIANPKG-----EMKGSAITGPVGKEC 122 (137)
T ss_dssp ESSCEEEEBCTTC-----CBSSSCBCSCBCHHH
T ss_pred cCCceEEEECCCC-----CEeeeEEEcchhHHH
Confidence 3556776666664 688999999998753
No 19
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=35.13 E-value=55 Score=23.68 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.2
Q ss_pred CCCCccCeEEEEecCCCCCceEEEEEEEecCc
Q 028679 81 PKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGY 112 (205)
Q Consensus 81 ~~~~~rGDIVvf~~P~~~~~~~VKRVialpGd 112 (205)
...|++||.|++. ...++|+|---..|-
T Consensus 61 gYrP~r~D~Vv~~----Gk~y~Vtr~~~~ngk 88 (102)
T 2pp6_A 61 NVIPRRGDRVVLR----GSEFTVTRIRRFNGK 88 (102)
T ss_dssp SCCCCTTCEEEET----TEEEEEEEEEEETTE
T ss_pred CcccCCCCEEEEc----CcEEEEEEEEEECCc
Confidence 4689999999998 467899998887664
No 20
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=29.14 E-value=1.7e+02 Score=21.98 Aligned_cols=28 Identities=14% Similarity=0.415 Sum_probs=20.5
Q ss_pred eeCCeEEEEeCCCCCCCCCCCCCCccccccCCC
Q 028679 126 LDKDECWVLADNENMKPKEANDSRTFGPVPMRN 158 (205)
Q Consensus 126 vp~g~~~vlGDN~~~~~~~S~DSR~~GpV~~~~ 158 (205)
..++.+-++.++. +..-+|-||||+++.
T Consensus 90 FddNA~Vlin~~g-----~p~GTrI~GPVarEl 117 (132)
T 1vq8_K 90 FEDNAAVIVDENE-----DPRGTELKGPIAREV 117 (132)
T ss_dssp ESSCEEEEECTTS-----CBSSSCBCSEECHHH
T ss_pred eCCceEEEECCCC-----CEeEEEEEcCcCHHH
Confidence 3556776666664 578899999998753
No 21
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.17 E-value=1.9e+02 Score=22.01 Aligned_cols=28 Identities=11% Similarity=0.280 Sum_probs=20.6
Q ss_pred eeCCeEEEEeCCCCCCCCCCCCCCccccccCCC
Q 028679 126 LDKDECWVLADNENMKPKEANDSRTFGPVPMRN 158 (205)
Q Consensus 126 vp~g~~~vlGDN~~~~~~~S~DSR~~GpV~~~~ 158 (205)
..++.+-++.++. +..-+|-||||+++.
T Consensus 99 FddNA~VLin~~g-----~p~GTRI~GPVarEl 126 (141)
T 3j21_J 99 FEDNAAVIVTPEG-----VPRGTEIRGPVAREA 126 (141)
T ss_dssp CSSCEEEEBCTTS-----CBCSSCCCSEECHHH
T ss_pred cCCcEEEEECCCC-----CEeeeEEEccccHHH
Confidence 3556776666664 688999999998753
Done!