BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028682
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08BW0|OTU5A_DANRE OTU domain-containing protein 5-A OS=Danio rerio GN=otud5a PE=2
SV=1
Length = 560
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 60/103 (58%)
Query: 5 EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
EPIN FHG + ++ PIR+SYH HYNS+V+P + T+G GLG + D+ +K A
Sbjct: 302 EPINTFHGIHQNNDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPAFKPGFADQSLMKNA 361
Query: 65 IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYL 107
IK ++ I+ +L + + +D E T + IE V S ++L
Sbjct: 362 IKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWL 404
>sp|Q640H3|OTU5B_XENLA OTU domain-containing protein 5-B OS=Xenopus laevis GN=otud5-b PE=2
SV=1
Length = 518
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 61/103 (59%)
Query: 5 EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
EPIN FHG ++ PIR+SYH HYNS+V+P + T+G GLG + + ++ +K+A
Sbjct: 262 EPINTFHGIQQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGHAEQSLMKSA 321
Query: 65 IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYL 107
I+ ++ I+ +L + + +D E T + IE V S ++L
Sbjct: 322 IRTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWL 364
>sp|Q3U2S4|OTUD5_MOUSE OTU domain-containing protein 5 OS=Mus musculus GN=Otud5 PE=1 SV=2
Length = 566
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 60/103 (58%)
Query: 5 EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
EPIN FHG + ++ PIR+SYH HYNS+V+P + T+G GLG + ++ +K A
Sbjct: 304 EPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGFAEQSLMKNA 363
Query: 65 IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYL 107
IK ++ I+ +L + + +D E T + IE V S ++L
Sbjct: 364 IKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWL 406
>sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1
Length = 571
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 60/103 (58%)
Query: 5 EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
EPIN FHG + ++ PIR+SYH HYNS+V+P + T+G GLG + ++ +K A
Sbjct: 309 EPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGFAEQSLMKNA 368
Query: 65 IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYL 107
IK ++ I+ +L + + +D E T + IE V S ++L
Sbjct: 369 IKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWL 411
>sp|Q2YDU3|OTUD5_RAT OTU domain-containing protein 5 OS=Rattus norvegicus GN=Otud5 PE=2
SV=2
Length = 566
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 60/103 (58%)
Query: 5 EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
EPIN FHG + ++ PIR+SYH HYNS+V+P + T+G GLG + ++ +K A
Sbjct: 304 EPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGFAEQSLMKNA 363
Query: 65 IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYL 107
IK ++ I+ +L + + +D E T + IE V S ++L
Sbjct: 364 IKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWL 406
>sp|Q7ZX21|OTU5A_XENLA OTU domain-containing protein 5-A OS=Xenopus laevis GN=otud5-a PE=2
SV=1
Length = 513
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 60/103 (58%)
Query: 5 EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
EPIN FHG ++ PIR+SYH HYNS+V+P + T+G GLG + ++ +K+A
Sbjct: 257 EPINTFHGIQKNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGYAEQSLMKSA 316
Query: 65 IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYL 107
I+ ++ I+ +L + + +D E T + IE V S ++L
Sbjct: 317 IRTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWL 359
>sp|Q6GL44|OTUD5_XENTR OTU domain-containing protein 5 OS=Xenopus tropicalis GN=otud5 PE=2
SV=1
Length = 518
Score = 80.5 bits (197), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 60/103 (58%)
Query: 5 EPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64
EPIN FHG ++ PIR+SYH HYNS+V+P + T+G GLG + ++ +K+A
Sbjct: 262 EPINTFHGIQQNEDEPIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGFAEQSLMKSA 321
Query: 65 IKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYL 107
I+ ++ I+ +L + + +D E T + IE V S ++L
Sbjct: 322 IRTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWL 364
>sp|Q748X2|LEU3_GEOSL 3-isopropylmalate dehydrogenase OS=Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA) GN=leuB PE=3 SV=1
Length = 362
Score = 34.3 bits (77), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 84 YSDLELTEKEIECMVMEVSRA---------EYLAGDNLKQQLGHKESSTSGAEPSSSGAR 134
Y D+EL+ ++ M++ R E + GD L + S G PS+S A
Sbjct: 216 YPDVELSHMYVDNAAMQLVRWPKQFDVILCENMFGDILSDEAAMLTGSL-GMLPSASLAE 274
Query: 135 SSCSETKLEGGKGCELSDTVLSNSMQMVLSMG----FSYLQVIEAYSIFGDDVDSMVCYL 190
+ + GG +++ ++N + +LSMG FS+ V A D +D+ V +
Sbjct: 275 GTFGMYEPSGGSAPDIAGQGIANPIAQILSMGMMLKFSFGMVDAA-----DAIDNAVATV 329
Query: 191 LETGSSSR 198
L+ G +R
Sbjct: 330 LDQGFRTR 337
>sp|Q39Y29|LEU3_GEOMG 3-isopropylmalate dehydrogenase OS=Geobacter metallireducens
(strain GS-15 / ATCC 53774 / DSM 7210) GN=leuB PE=3 SV=1
Length = 362
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 84 YSDLELTEKEIECMVMEVSRA---------EYLAGDNLKQQLGHKESSTSGAEPSSSGAR 134
Y D+EL+ ++ M++ R E + GD L + S G PS+S A
Sbjct: 216 YPDVELSHMYVDNAAMQLVRWPKQFDVILCENMFGDILSDEAAMLTGSL-GMLPSASLAE 274
Query: 135 SSCSETKLEGGKGCELSDTVLSNSMQMVLSMG----FSYLQVIEAYSIFGDDVDSMVCYL 190
+ + GG +++ ++N + +LSMG FS+ V A D +D+ V +
Sbjct: 275 GTFGMYEPSGGSAPDIAGQGIANPIAQILSMGMMLRFSFGMVDAA-----DAIDNAVAKV 329
Query: 191 LETGSSSR 198
L+ G +R
Sbjct: 330 LDQGCRTR 337
>sp|Q9HBE1|PATZ1_HUMAN POZ-, AT hook-, and zinc finger-containing protein 1 OS=Homo
sapiens GN=PATZ1 PE=1 SV=1
Length = 687
Score = 33.9 bits (76), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 22 RLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEG 81
R+SYH +H S+ P + G GFS N QV + + + Q + +
Sbjct: 397 RMSYHVRSHDGSVGKPY-ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQTCNASFATRD 455
Query: 82 RFYSDLELTEKEIECMVM-EVSRAEYLAGDNLKQQ 115
R S L E ++ C V + RA Y+A D+LK+
Sbjct: 456 RLRSHLACHEDKVPCQVCGKYLRAAYMA-DHLKKH 489
>sp|Q07113|MPRI_MOUSE Cation-independent mannose-6-phosphate receptor OS=Mus musculus
GN=Igf2r PE=1 SV=1
Length = 2483
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 21 IRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAE 80
I+LSY +G YN+ R T+ + F C D+D A + + Q+ DN+
Sbjct: 698 IQLSYRNGTPYNNEKHTPRATL---ITFLC------DRD---AGVGFPEYQEEDNSTY-N 744
Query: 81 GRFYSDLELTEKEIECMVMEVSRAE 105
R+Y+ E+ +ECMV + S E
Sbjct: 745 FRWYTSYACPEEPLECMVTDPSMME 769
>sp|Q9J504|V231_FOWPN Putative ankyrin repeat protein FPV231 OS=Fowlpox virus (strain
NVSL) GN=FPV231 PE=4 SV=1
Length = 256
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 84 YSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHK 119
Y D+ + K IE +V + + EY+A D++K QLG+K
Sbjct: 164 YIDI-IDNKNIEVIVSQFTILEYIAPDDIKNQLGYK 198
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Query: 109 GDNL-KQQLGHKESSTSGAEPSSSGA--RSSCSETKL 142
G N+ K++ GH ESST G EPS SG +SSC+ ++L
Sbjct: 341 GSNMDKKEDGHSESSTCGEEPSISGTPEKSSCTLSQL 377
>sp|Q0A7K4|ENO_ALHEH Enolase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=eno PE=3
SV=1
Length = 429
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 66 KAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQL 116
K QD+ ++ + EG F DL E +E ++ + RA Y AG+N+ L
Sbjct: 191 KVLQDRGLNTGVGDEGGFAPDLPSNEAALEVILEAIDRAGYKAGENVWLAL 241
>sp|A5UL52|FEN_METS3 Flap endonuclease 1 OS=Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861) GN=fen PE=3 SV=1
Length = 327
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 81 GRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKESSTSGAEPSSSGARSSCSET 140
G Y + + EK+I+ + + YL + + Q+ +E S + + A+ E
Sbjct: 60 GILYRNSSMIEKDIKPIYVFDGTPSYLKQETIDQRRQTREESEKKWKEAL--AKQDTQEA 117
Query: 141 KLEGGKGCELSDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSS 196
+ + +LS ++ +S +++ MG Y IEAY + ++ YL+E G +
Sbjct: 118 RKYAMRSSKLSPYIIESSKKLLTMMGIPY---IEAYG----EGEAQAAYLVENGDA 166
>sp|Q485G8|PYRH_COLP3 Uridylate kinase OS=Colwellia psychrerythraea (strain 34H / ATCC
BAA-681) GN=pyrH PE=3 SV=1
Length = 247
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 25 YHHGNHYNSLVDPRRMTVGAGLG--------FSCLRGTNVDKDQVKAAIKAQQDQQIDNA 76
Y+ N + L R + AG G +CLRG ++ D V A K D A
Sbjct: 117 YNWANAISLLKSGRVVIFSAGTGNPFFTTDSAACLRGIEIEADAVLKATKVDGVYSEDPA 176
Query: 77 LLAEGRFYSDL---ELTEKEIECM 97
E YS+L E+ +KE++ M
Sbjct: 177 KNPEAELYSELSYDEVLDKELKVM 200
>sp|Q6NG20|ERA_CORDI GTPase Era OS=Corynebacterium diphtheriae (strain ATCC 700971 /
NCTC 13129 / Biotype gravis) GN=era PE=3 SV=1
Length = 305
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 51 LRGTNVDKDQVKAAIKAQQDQQID--NALLAEG-RFYSDLELTEKEIECMVMEVSRAEYL 107
L G N + V A Q+D +D LL EG +FY D +T+ + E + E+ R L
Sbjct: 150 LLGGNSEVVPVSAVTGEQRDVLLDVITRLLPEGPKFYPDDHITDDDTETRLSELIREAAL 209
Query: 108 AGDNLKQQLGH 118
+G LK +L H
Sbjct: 210 SG--LKDELPH 218
>sp|A0L7X8|ENO_MAGSM Enolase OS=Magnetococcus sp. (strain MC-1) GN=eno PE=3 SV=1
Length = 429
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Query: 6 PINIFHGSYNTDNPPIRLS--YHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKA 63
P+ + G NT P+ + + G H ++ VD + + SC + + +
Sbjct: 129 PLYRYLGGTNTSLLPVPMMNIINGGAHADNNVDIQEFMIMPVAATSCTEAIRMGAEVFHS 188
Query: 64 AIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQL 116
K + + ++ A+ EG F +L E+ ++ +V + A Y G+++K L
Sbjct: 189 LKKVLKSKGLNTAVGDEGGFAPNLGSNEEALKVIVEAIEAAGYKPGEDIKLAL 241
>sp|Q1RIM1|TOP1_RICBR DNA topoisomerase 1 OS=Rickettsia bellii (strain RML369-C) GN=topA
PE=3 SV=1
Length = 800
Score = 30.8 bits (68), Expect = 6.6, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 168 SYLQVIEAYSIFGDDVDSMVCYLLETGSSSRRKGK 202
SY+Q Y IFG++ DS VC +TG S + GK
Sbjct: 580 SYVQQALDYHIFGENKDSKVCPSCKTGELSLKLGK 614
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,185,666
Number of Sequences: 539616
Number of extensions: 2856077
Number of successful extensions: 6604
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 6581
Number of HSP's gapped (non-prelim): 43
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)