Query 028682
Match_columns 205
No_of_seqs 57 out of 59
Neff 3.1
Searched_HMMs 29240
Date Tue Mar 26 01:50:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3phu_A RNA-directed RNA polyme 97.9 2.1E-06 7E-11 73.0 1.0 58 17-96 140-197 (219)
2 1vg5_A RSGI RUH-014, rhomboid 97.9 4E-05 1.4E-09 55.8 7.3 42 152-193 26-67 (73)
3 2g3q_A Protein YBL047C; endocy 97.7 4E-05 1.4E-09 49.2 4.1 37 156-192 5-41 (43)
4 2ooa_A E3 ubiquitin-protein li 97.6 6.9E-05 2.3E-09 52.3 5.1 40 154-193 10-49 (52)
5 1ify_A HHR23A, UV excision rep 97.5 9.9E-05 3.4E-09 49.2 4.6 41 152-192 5-45 (49)
6 2ekk_A UBA domain from E3 ubiq 97.5 0.00011 3.8E-09 48.1 4.5 38 154-192 8-45 (47)
7 2d9s_A CBL E3 ubiquitin protei 97.5 0.0002 6.9E-09 50.0 5.8 42 154-195 8-49 (53)
8 1wji_A Tudor domain containing 97.4 0.00018 6.1E-09 50.6 4.5 40 155-194 9-48 (63)
9 1vej_A Riken cDNA 4931431F19; 97.4 0.00063 2.2E-08 49.7 7.5 41 153-193 27-68 (74)
10 2dak_A Ubiquitin carboxyl-term 97.4 0.00028 9.6E-09 48.9 5.2 40 154-193 8-47 (63)
11 1z96_A DNA-damage, UBA-domain 97.3 0.00024 8.4E-09 44.1 4.1 37 155-191 4-40 (40)
12 2oo9_A E3 ubiquitin-protein li 97.3 0.0005 1.7E-08 46.9 5.6 43 153-195 2-44 (46)
13 1veg_A NEDD8 ultimate buster-1 97.3 0.0012 4.1E-08 49.2 7.9 40 154-193 28-67 (83)
14 2knz_A Ubiquilin-4; cytoplasm, 97.2 0.0004 1.4E-08 46.9 4.8 43 152-194 8-51 (53)
15 2crn_A Ubash3A protein; compac 97.2 0.00037 1.3E-08 49.1 4.7 40 155-194 9-49 (64)
16 2jy5_A Ubiquilin-1; UBA, alter 97.2 0.00052 1.8E-08 46.3 5.3 41 152-192 9-50 (52)
17 2dai_A Ubadc1, ubiquitin assoc 97.2 0.0012 4.2E-08 48.7 7.6 40 154-193 28-67 (83)
18 4ae4_A Ubiquitin-associated pr 97.2 0.00038 1.3E-08 54.2 5.0 37 157-193 10-46 (118)
19 2juj_A E3 ubiquitin-protein li 97.2 0.0006 2E-08 48.2 5.3 45 152-196 4-48 (56)
20 1wgn_A UBAP1, ubiquitin associ 97.2 0.00044 1.5E-08 49.9 4.5 39 156-194 20-58 (63)
21 2dag_A Ubiquitin carboxyl-term 97.2 0.00054 1.8E-08 49.4 5.0 40 154-193 8-48 (74)
22 2cpw_A CBL-interacting protein 97.1 0.00045 1.5E-08 48.5 4.4 38 156-193 20-58 (64)
23 1wiv_A UBP14, ubiquitin-specif 97.1 0.0006 2E-08 49.0 5.0 40 154-193 28-67 (73)
24 3by4_A OTU1, ubiquitin thioest 97.1 0.00012 4E-09 61.3 1.1 30 4-36 110-139 (212)
25 1whc_A RSGI RUH-027, UBA/UBX 3 97.1 0.0006 2.1E-08 47.7 4.3 38 156-193 10-48 (64)
26 1dv0_A DNA repair protein HHR2 97.1 0.00011 3.9E-09 48.8 0.6 37 157-193 6-42 (47)
27 1vek_A UBP14, ubiquitin-specif 97.0 0.00085 2.9E-08 49.5 5.0 40 154-193 28-68 (84)
28 2dkl_A Trinucleotide repeat co 96.7 0.002 6.8E-08 47.8 4.7 38 156-193 22-59 (85)
29 3phx_A RNA-directed RNA polyme 96.6 0.00062 2.1E-08 56.0 1.6 21 17-37 140-160 (185)
30 2dah_A Ubiquilin-3; UBA domain 96.5 0.0044 1.5E-07 42.3 5.0 43 154-196 8-51 (54)
31 2bwb_A Ubiquitin-like protein 96.3 0.0039 1.3E-07 41.2 3.9 40 153-192 5-45 (46)
32 2lbc_A Ubiquitin carboxyl-term 96.2 0.0054 1.8E-07 47.0 4.6 40 154-193 77-116 (126)
33 1wr1_B Ubiquitin-like protein 95.8 0.014 4.9E-07 40.4 5.0 40 153-192 15-55 (58)
34 1oqy_A HHR23A, UV excision rep 95.5 0.016 5.4E-07 52.3 5.4 42 151-192 164-205 (368)
35 2lbc_A Ubiquitin carboxyl-term 95.0 0.019 6.5E-07 43.9 3.8 38 156-193 4-42 (126)
36 2qsf_X RAD23, UV excision repa 95.0 0.017 5.8E-07 47.9 3.7 37 157-193 132-168 (171)
37 4ae4_A Ubiquitin-associated pr 94.3 0.057 1.9E-06 41.9 4.9 38 155-192 76-113 (118)
38 2dna_A Unnamed protein product 94.2 0.055 1.9E-06 38.9 4.3 42 153-194 17-59 (67)
39 1oqy_A HHR23A, UV excision rep 93.8 0.028 9.6E-07 50.7 2.6 38 156-193 326-363 (368)
40 3k9o_A Ubiquitin-conjugating e 92.6 0.12 4.1E-06 42.2 4.4 39 154-192 162-200 (201)
41 2cwb_A Chimera of immunoglobul 92.6 0.16 5.6E-06 39.2 4.9 41 154-194 65-106 (108)
42 1wj7_A Hypothetical protein (R 92.4 0.14 4.8E-06 39.7 4.3 41 154-194 38-79 (104)
43 2cp8_A NEXT to BRCA1 gene 1 pr 87.9 1.1 3.9E-05 30.9 5.4 42 154-195 8-50 (54)
44 3e46_A Ubiquitin-conjugating e 80.9 2 6.7E-05 36.9 5.0 39 154-192 214-252 (253)
45 1p9y_A Trigger factor, TF; alp 75.0 7.1 0.00024 29.4 6.0 45 46-111 42-86 (121)
46 2cos_A Serine/threonine protei 74.5 5.5 0.00019 27.7 4.8 41 154-194 8-49 (54)
47 2kna_A Baculoviral IAP repeat- 67.6 5.7 0.0002 29.8 4.0 21 154-174 26-46 (104)
48 2pwq_A Ubiquitin conjugating e 59.4 1.9 6.6E-05 36.0 0.0 38 155-192 177-214 (216)
49 3ihp_A Ubiquitin carboxyl-term 58.9 8.9 0.0003 37.6 4.5 39 154-192 719-757 (854)
50 2nsc_A Trigger factor, TF; cha 56.4 10 0.00035 28.0 3.5 20 46-65 39-58 (109)
51 1tte_A Ubiquitin-conjugating e 55.7 7.7 0.00026 32.3 3.1 28 156-183 170-197 (215)
52 1q02_A Sequestosome 1; helical 55.4 3.7 0.00013 28.5 0.9 17 152-168 7-23 (52)
53 3ihp_A Ubiquitin carboxyl-term 54.9 13 0.00045 36.4 5.0 39 155-193 652-691 (854)
54 4egv_A Acetyl-COA acetyltransf 54.0 5.9 0.0002 36.4 2.3 47 21-68 1-53 (520)
55 2d3o_1 Trigger factor, TF; rib 53.5 5.6 0.00019 29.5 1.7 46 46-111 38-83 (112)
56 3mva_O Transcription terminati 51.3 12 0.00042 32.0 3.7 42 155-196 19-64 (343)
57 4fp9_B Mterf domain-containing 41.4 17 0.00059 32.0 3.2 44 154-197 45-92 (335)
58 1t11_A Trigger factor, TF; hel 39.9 51 0.0017 29.2 6.0 45 46-111 42-86 (392)
59 2di0_A Activating signal coint 34.9 29 0.00099 25.0 2.9 41 153-193 11-53 (71)
60 1wgl_A TOLL-interacting protei 34.2 75 0.0026 21.6 4.8 41 153-194 7-50 (59)
61 3e3v_A Regulatory protein RECX 32.2 22 0.00076 28.2 2.1 31 155-185 139-169 (177)
62 3c8l_A FTSZ-like protein of un 27.9 9 0.00031 30.3 -0.8 35 28-64 33-76 (122)
63 1ybx_A Conserved hypothetical 27.3 1.2E+02 0.0041 24.2 5.6 37 39-77 27-64 (143)
64 1ixs_A Holliday junction DNA h 27.1 1.1E+02 0.0038 20.7 4.7 37 154-190 16-57 (62)
65 2w84_A Peroxisomal membrane pr 26.7 41 0.0014 24.3 2.5 40 56-101 13-59 (70)
66 2rq6_A ATP synthase epsilon ch 23.8 1.2E+02 0.0041 23.3 4.9 63 34-102 68-130 (138)
67 2dhy_A CUE domain-containing p 20.7 2.2E+02 0.0076 19.8 6.5 41 152-193 15-58 (67)
68 2zz8_A LIPL32 protein; outer-m 20.7 41 0.0014 29.3 1.8 9 27-35 154-162 (241)
69 3ff5_A PEX14P, peroxisomal bio 20.6 45 0.0015 22.9 1.7 39 56-100 8-53 (54)
70 1q08_A Zn(II)-responsive regul 20.3 1.4E+02 0.0049 20.4 4.3 23 157-179 7-29 (99)
No 1
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=97.91 E-value=2.1e-06 Score=73.04 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=33.7
Q ss_pred CCCCeeeeecCCCccccccCCCCCcccccccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHH
Q 028682 17 DNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIEC 96 (205)
Q Consensus 17 ~n~PIRLSYH~g~HYNSIvdP~~~tVGvGLGlp~~~pg~aDk~~~~~Ai~~Se~~~IeqamLedk~~~TD~e~Te~eIee 96 (205)
...||+|+||+|.|||||.... +..++.+ +....+|+.|+.|++..||||.|-+|=+-
T Consensus 140 ~~~~I~L~Y~g~~HYdSL~~~~-----------d~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 197 (219)
T 3phu_A 140 VFTAVNLLHSGQTHFDALRILP-----------QFETDTR-----------EALSLMDRVIAVDQLTSSSSDELQDYEDL 197 (219)
T ss_dssp TTTSEEEEEETTTEEEEEEECT-----------TTCCSCC-----------CCCCHHHHHHHHHHHHC------------
T ss_pred CCCeEEEEECCCcCchhheECC-----------CCCCCCC-----------cchhHHHHHHHHHHHHhccHHhhhhHHHH
Confidence 3689999999999999997632 2333322 22345688999999999999999665443
No 2
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.89 E-value=4e-05 Score=55.77 Aligned_cols=42 Identities=26% Similarity=0.311 Sum_probs=38.5
Q ss_pred cccchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682 152 DTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 193 (205)
Q Consensus 152 ~~~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~ 193 (205)
.......|+.|++|||+-++|+.|++..+-|+|.-+.||++-
T Consensus 26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 26 VAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp SCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 345778999999999999999999999999999999999974
No 3
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=97.69 E-value=4e-05 Score=49.23 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=34.7
Q ss_pred hHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHH
Q 028682 156 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 192 (205)
Q Consensus 156 ~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E 192 (205)
...|+.|++|||+-.+++.|+...+-|++.-+.||++
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 3679999999999999999999999999999999986
No 4
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=97.65 E-value=6.9e-05 Score=52.26 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=37.1
Q ss_pred cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682 154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 193 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~ 193 (205)
..+..|+.||+|||+-.+||+|-.+.+.|+|.--+.|+|-
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4568999999999999999999999999999999999985
No 5
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.55 E-value=9.9e-05 Score=49.24 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=38.0
Q ss_pred cccchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHH
Q 028682 152 DTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 192 (205)
Q Consensus 152 ~~~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E 192 (205)
+......|+.|++|||+-.+|+.|.+..+-|+|.-+.||++
T Consensus 5 ~~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 5 GSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp SHHHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 44567889999999999999999999999999999999997
No 6
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=0.00011 Score=48.14 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=35.1
Q ss_pred cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHH
Q 028682 154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 192 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E 192 (205)
.....|+.|++|||+-.+++.|+..-| |++.-+.||++
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 8 VNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp SCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 456789999999999999999999998 89999999986
No 7
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.50 E-value=0.0002 Score=50.04 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=38.7
Q ss_pred cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHhCc
Q 028682 154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGS 195 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~~~ 195 (205)
..+..|+.||+|||+-++||+|..+.+.|+|+--+.|+|-.+
T Consensus 8 ~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~~ 49 (53)
T 2d9s_A 8 QLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREFSG 49 (53)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 456779999999999999999999999999999999999854
No 8
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.39 E-value=0.00018 Score=50.57 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=36.8
Q ss_pred chHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHhC
Q 028682 155 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETG 194 (205)
Q Consensus 155 l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~~ 194 (205)
-...|+.|++|||+-.+|+.|+...+-|++.-+.||++-.
T Consensus 9 ~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~ 48 (63)
T 1wji_A 9 DEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSN 48 (63)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 3568999999999999999999999999999999999863
No 9
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.38 E-value=0.00063 Score=49.66 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=36.9
Q ss_pred ccchHHHHHHHHhcc-hHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682 153 TVLSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLET 193 (205)
Q Consensus 153 ~~l~~~~q~~l~mGF-s~~qvieAysifGD~~d~~~~yl~E~ 193 (205)
..+...|+.|++||| .-.+++.|....+-|++.-|.||+.-
T Consensus 27 ~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 27 GRYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp TTSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 457889999999999 57888999999999999999999964
No 10
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=0.00028 Score=48.94 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=36.9
Q ss_pred cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682 154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 193 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~ 193 (205)
.....|+.|++|||+-.+++.|....+-|++.-+.||++-
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 8 PPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3567899999999999999999999999999999999985
No 11
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.32 E-value=0.00024 Score=44.12 Aligned_cols=37 Identities=30% Similarity=0.524 Sum_probs=34.1
Q ss_pred chHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHH
Q 028682 155 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLL 191 (205)
Q Consensus 155 l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~ 191 (205)
....|+.|++|||+-.+++.|+...+-|++.-+.||+
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 4568999999999999999999999999999999985
No 12
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=97.29 E-value=0.0005 Score=46.93 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=39.9
Q ss_pred ccchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHhCc
Q 028682 153 TVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGS 195 (205)
Q Consensus 153 ~~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~~~ 195 (205)
..|...|+.||+|||+...|+.|..|=.-|+++--+-|+|-.+
T Consensus 2 ~~~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~~ 44 (46)
T 2oo9_A 2 SQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFAA 44 (46)
T ss_dssp CHHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHHCC
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHhcc
Confidence 4688999999999999999999999999999999999998764
No 13
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.25 E-value=0.0012 Score=49.21 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=37.4
Q ss_pred cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682 154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 193 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~ 193 (205)
+....|+.|++|||+-.+|+.|++..+.|++.-+.||+.-
T Consensus 28 ~~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 28 PSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3567899999999999999999999999999999999985
No 14
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=97.24 E-value=0.0004 Score=46.92 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=39.0
Q ss_pred cccchHHHHHHHHhcc-hHHHHHHHHHhhcCChhHHHHHHHHhC
Q 028682 152 DTVLSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLETG 194 (205)
Q Consensus 152 ~~~l~~~~q~~l~mGF-s~~qvieAysifGD~~d~~~~yl~E~~ 194 (205)
...+...|+.|++||| .-.+++.|...-+-|++.-+.||++-+
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3457788999999999 999999999999999999999999854
No 15
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.24 E-value=0.00037 Score=49.09 Aligned_cols=40 Identities=18% Similarity=0.364 Sum_probs=36.1
Q ss_pred chHHHHHHHHhcchHHHHHHHHHhhcC-ChhHHHHHHHHhC
Q 028682 155 LSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLETG 194 (205)
Q Consensus 155 l~~~~q~~l~mGFs~~qvieAysifGD-~~d~~~~yl~E~~ 194 (205)
....|+.|++|||+-.+++.|...-|. |++.-++||+|-.
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 9 SPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHC 49 (64)
T ss_dssp SCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 345789999999999999999999987 9999999999863
No 16
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=97.24 E-value=0.00052 Score=46.29 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=37.3
Q ss_pred cccchHHHHHHHHhcc-hHHHHHHHHHhhcCChhHHHHHHHH
Q 028682 152 DTVLSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLE 192 (205)
Q Consensus 152 ~~~l~~~~q~~l~mGF-s~~qvieAysifGD~~d~~~~yl~E 192 (205)
...+...|+.|++||| .-.+++.|...-|-|++.-+.||+.
T Consensus 9 ~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp TTTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3457889999999999 9999999999999999999999974
No 17
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=0.0012 Score=48.66 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=37.0
Q ss_pred cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682 154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 193 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~ 193 (205)
.-...|+.|++|||+-.+++.|+..-+-|++.-++||++-
T Consensus 28 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 28 VDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 3567899999999999999999999999999999999986
No 18
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=97.21 E-value=0.00038 Score=54.20 Aligned_cols=37 Identities=27% Similarity=0.589 Sum_probs=34.9
Q ss_pred HHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682 157 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 193 (205)
Q Consensus 157 ~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~ 193 (205)
..+++|++|||+..+|.-|....|.|++.+|+||++-
T Consensus 10 ~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 10 QCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 4689999999999999999999999999999999985
No 19
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=97.19 E-value=0.0006 Score=48.20 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=40.9
Q ss_pred cccchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHhCcc
Q 028682 152 DTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETGSS 196 (205)
Q Consensus 152 ~~~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~~~~ 196 (205)
+......|+.||+|||+...|++|..|=..|+++--+.|+|-.+-
T Consensus 4 ~~p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf~~~ 48 (56)
T 2juj_A 4 SPQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFVSI 48 (56)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHSCCC
T ss_pred CCCChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHHHcc
Confidence 445778999999999999999999999999999999999998653
No 20
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.16 E-value=0.00044 Score=49.86 Aligned_cols=39 Identities=26% Similarity=0.566 Sum_probs=36.2
Q ss_pred hHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHhC
Q 028682 156 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLETG 194 (205)
Q Consensus 156 ~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~~ 194 (205)
.+.|.+|++|||++.|++-|-.--|-|++..+.|||.-.
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 456999999999999999999999999999999999763
No 21
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=0.00054 Score=49.39 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=36.5
Q ss_pred cchHHHHHHHHhcchHHHHHHHHHhhcC-ChhHHHHHHHHh
Q 028682 154 VLSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET 193 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs~~qvieAysifGD-~~d~~~~yl~E~ 193 (205)
+-...|+.|++|||+-.+++.|+..-|. |++.-+.||++-
T Consensus 8 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 8 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp SCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 3467899999999999999999999995 899999999986
No 22
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.15 E-value=0.00045 Score=48.48 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=35.1
Q ss_pred hHHHHHHHHhcchHHHHHHHHHhhcC-ChhHHHHHHHHh
Q 028682 156 SNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET 193 (205)
Q Consensus 156 ~~~~q~~l~mGFs~~qvieAysifGD-~~d~~~~yl~E~ 193 (205)
...|+.|++|||+-.+++.|+..-|- |++.-+.||++-
T Consensus 20 e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 20 GSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSH 58 (64)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 45799999999999999999999997 999999999974
No 23
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.13 E-value=0.0006 Score=49.02 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=37.2
Q ss_pred cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682 154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 193 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~ 193 (205)
+-...|+.|++|||+-.+|+.|++.-|-|++.-+.||++-
T Consensus 28 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 28 IDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp SCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4567899999999999999999999999999999999985
No 24
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=97.09 E-value=0.00012 Score=61.30 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=24.8
Q ss_pred CcccccccCCCCCCCCCeeeeecCCCccccccC
Q 028682 4 AEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVD 36 (205)
Q Consensus 4 ~EPINiFh~~~~~~n~PIRLSYH~g~HYNSIvd 36 (205)
..|+.+|...+ .++||+|+|| |.|||||..
T Consensus 110 ~~~~~~~~~~~--~~~~I~L~Y~-g~HYdsl~~ 139 (212)
T 3by4_A 110 AVKIEKFNEDK--FDNYILILFN-GIHYDSLTM 139 (212)
T ss_dssp TTEEEEESTTT--CSEEEEEEEC-SSCEEEEEE
T ss_pred CCCeEEeCCCC--CCCeEEEEEc-CCcceEEec
Confidence 35788887655 5789999998 899999987
No 25
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.06 E-value=0.0006 Score=47.74 Aligned_cols=38 Identities=18% Similarity=0.440 Sum_probs=35.0
Q ss_pred hHHHHHHHHhcchHHHHHHHHHhhc-CChhHHHHHHHHh
Q 028682 156 SNSMQMVLSMGFSYLQVIEAYSIFG-DDVDSMVCYLLET 193 (205)
Q Consensus 156 ~~~~q~~l~mGFs~~qvieAysifG-D~~d~~~~yl~E~ 193 (205)
...|+.|++|||+-.++..|+..-| -|++.-+.||++-
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 10 LTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 4579999999999999999999995 7999999999986
No 26
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=97.06 E-value=0.00011 Score=48.81 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=34.8
Q ss_pred HHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682 157 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 193 (205)
Q Consensus 157 ~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~ 193 (205)
..|+.|++|||+-.+|++||.--|-|++.-++||++-
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 5789999999999999999999999999999999863
No 27
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.01 E-value=0.00085 Score=49.46 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=36.0
Q ss_pred cchHHHHHHHHhcchHHHHHHHHHhhcC-ChhHHHHHHHHh
Q 028682 154 VLSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET 193 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs~~qvieAysifGD-~~d~~~~yl~E~ 193 (205)
.-...|+.|++|||+-.+++.|....|+ |++.-++||++-
T Consensus 28 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 28 ANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3467899999999999999999888875 999999999985
No 28
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.68 E-value=0.002 Score=47.78 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=36.3
Q ss_pred hHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682 156 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 193 (205)
Q Consensus 156 ~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~ 193 (205)
...|+.|++|||+-.+|++|+...+-|++.-+.||++.
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 67899999999999999999999999999999999986
No 29
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=96.60 E-value=0.00062 Score=56.00 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=18.4
Q ss_pred CCCCeeeeecCCCccccccCC
Q 028682 17 DNPPIRLSYHHGNHYNSLVDP 37 (205)
Q Consensus 17 ~n~PIRLSYH~g~HYNSIvdP 37 (205)
+.+||+|+||++.|||||...
T Consensus 140 ~~~~I~L~Y~g~~HYdsl~~~ 160 (185)
T 3phx_A 140 VFTAVNLLHSGQTHFDALRIL 160 (185)
T ss_dssp TTTSEEEEEETTTEEEEEEEC
T ss_pred CCCEEEEEECCCcCchhceEC
Confidence 368999999999999999763
No 30
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.48 E-value=0.0044 Score=42.32 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=37.5
Q ss_pred cchHHHHHHHHhcchHHH-HHHHHHhhcCChhHHHHHHHHhCcc
Q 028682 154 VLSNSMQMVLSMGFSYLQ-VIEAYSIFGDDVDSMVCYLLETGSS 196 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs~~q-vieAysifGD~~d~~~~yl~E~~~~ 196 (205)
.+.+.|+.|++|||+-++ ++.|....+-|++.-|.||+.-+..
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 467789999999996655 6999999999999999999987643
No 31
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=96.32 E-value=0.0039 Score=41.22 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=35.2
Q ss_pred ccchHHHHHHHHhcch-HHHHHHHHHhhcCChhHHHHHHHH
Q 028682 153 TVLSNSMQMVLSMGFS-YLQVIEAYSIFGDDVDSMVCYLLE 192 (205)
Q Consensus 153 ~~l~~~~q~~l~mGFs-~~qvieAysifGD~~d~~~~yl~E 192 (205)
..+.+.|+.|++|||+ -.+++.|...-+-|++.-+.||+.
T Consensus 5 ~~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 3467899999999996 566899999999999999999984
No 32
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=96.19 E-value=0.0054 Score=46.95 Aligned_cols=40 Identities=18% Similarity=0.334 Sum_probs=36.8
Q ss_pred cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682 154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 193 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~ 193 (205)
.....|+.|++|||+-.+++.|+...|-|++.-+.||+..
T Consensus 77 ~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~ 116 (126)
T 2lbc_A 77 PPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSH 116 (126)
T ss_dssp CCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4567899999999999999999999999999999999974
No 33
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=95.81 E-value=0.014 Score=40.44 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=36.0
Q ss_pred ccchHHHHHHHHhcch-HHHHHHHHHhhcCChhHHHHHHHH
Q 028682 153 TVLSNSMQMVLSMGFS-YLQVIEAYSIFGDDVDSMVCYLLE 192 (205)
Q Consensus 153 ~~l~~~~q~~l~mGFs-~~qvieAysifGD~~d~~~~yl~E 192 (205)
..+.+.|+.|++|||+ -.+++.|...-+-|++.-|.||+.
T Consensus 15 ~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 15 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4578899999999995 668899999999999999999986
No 34
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=95.50 E-value=0.016 Score=52.32 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=38.6
Q ss_pred CcccchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHH
Q 028682 151 SDTVLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 192 (205)
Q Consensus 151 ~~~~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E 192 (205)
.+......|+.|++|||+-++|+.|-..-+-|+|.-+.||+.
T Consensus 164 ~g~~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~ 205 (368)
T 1oqy_A 164 TGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 205 (368)
T ss_dssp CTTTHHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred CCcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456688899999999999999999999999999999999984
No 35
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=95.02 E-value=0.019 Score=43.88 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=34.9
Q ss_pred hHHHHHHHHhcchHHHHHHHHHhhcC-ChhHHHHHHHHh
Q 028682 156 SNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET 193 (205)
Q Consensus 156 ~~~~q~~l~mGFs~~qvieAysifGD-~~d~~~~yl~E~ 193 (205)
...++.|++|||+-.++-+|...-|. |++.-++||++-
T Consensus 4 ~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~ 42 (126)
T 2lbc_A 4 ESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVH 42 (126)
T ss_dssp THHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 35689999999999999999999987 999999999995
No 36
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=95.00 E-value=0.017 Score=47.90 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=35.2
Q ss_pred HHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682 157 NSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 193 (205)
Q Consensus 157 ~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~ 193 (205)
..|+.|++|||+-.+||+||.--+-|.+.-.+||++-
T Consensus 132 eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 132 QAISRLCELGFERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4899999999999999999999999999999999974
No 37
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=94.28 E-value=0.057 Score=41.88 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=35.6
Q ss_pred chHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHH
Q 028682 155 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 192 (205)
Q Consensus 155 l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E 192 (205)
..+.|.+|++|||+-.++.+|-...+-|+|.-+-||+=
T Consensus 76 ~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 76 FLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999984
No 38
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.18 E-value=0.055 Score=38.89 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=36.7
Q ss_pred ccchHHHHHHHHhcchHH-HHHHHHHhhcCChhHHHHHHHHhC
Q 028682 153 TVLSNSMQMVLSMGFSYL-QVIEAYSIFGDDVDSMVCYLLETG 194 (205)
Q Consensus 153 ~~l~~~~q~~l~mGFs~~-qvieAysifGD~~d~~~~yl~E~~ 194 (205)
..+...+++|.+|||.=+ .+++|-..-+-|++.-|.||+.-+
T Consensus 17 ~~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~ 59 (67)
T 2dna_A 17 VRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQ 59 (67)
T ss_dssp HHTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 457889999999999555 559999999999999999999874
No 39
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=93.75 E-value=0.028 Score=50.68 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=35.9
Q ss_pred hHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682 156 SNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLET 193 (205)
Q Consensus 156 ~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E~ 193 (205)
...|+.|++|||+-.+|++||...+-|.+.-++||++-
T Consensus 326 ~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~~ 363 (368)
T 1oqy_A 326 KEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQ 363 (368)
T ss_dssp HHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 45899999999999999999999999999999999975
No 40
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=92.62 E-value=0.12 Score=42.21 Aligned_cols=39 Identities=28% Similarity=0.295 Sum_probs=36.7
Q ss_pred cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHH
Q 028682 154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 192 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E 192 (205)
.+..-|+.|++|||+=.+|++|.+-.+=|++.-+.||++
T Consensus 162 ~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 162 EYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 457899999999999999999999999999999999986
No 41
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=92.58 E-value=0.16 Score=39.24 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=36.8
Q ss_pred cchHHHHHHHHhcch-HHHHHHHHHhhcCChhHHHHHHHHhC
Q 028682 154 VLSNSMQMVLSMGFS-YLQVIEAYSIFGDDVDSMVCYLLETG 194 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs-~~qvieAysifGD~~d~~~~yl~E~~ 194 (205)
.+.+.|+.|.+|||+ -.+++.|...-+-|++.-|.||+.-|
T Consensus 65 ~~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 65 QWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp TTHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred chHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 467899999999995 57999999999999999999999754
No 42
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.40 E-value=0.14 Score=39.68 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=38.2
Q ss_pred cchHHHHHHHHh-cchHHHHHHHHHhhcCChhHHHHHHHHhC
Q 028682 154 VLSNSMQMVLSM-GFSYLQVIEAYSIFGDDVDSMVCYLLETG 194 (205)
Q Consensus 154 ~l~~~~q~~l~m-GFs~~qvieAysifGD~~d~~~~yl~E~~ 194 (205)
.+..-|+.|+.| ||+-++|+.|..-.+-|++.-|.||+|-.
T Consensus 38 d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 38 DFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 456789999999 99999999999999999999999999874
No 43
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=87.94 E-value=1.1 Score=30.95 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=37.9
Q ss_pred cchHHHHHHHHhcc-hHHHHHHHHHhhcCChhHHHHHHHHhCc
Q 028682 154 VLSNSMQMVLSMGF-SYLQVIEAYSIFGDDVDSMVCYLLETGS 195 (205)
Q Consensus 154 ~l~~~~q~~l~mGF-s~~qvieAysifGD~~d~~~~yl~E~~~ 195 (205)
.+.+-++.|.+||| .-.+-++|-.=.|.|++..|..|+..+.
T Consensus 8 ~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~ 50 (54)
T 2cp8_A 8 QTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSG 50 (54)
T ss_dssp THHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccC
Confidence 36678999999999 8999999999999999999999998753
No 44
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=80.94 E-value=2 Score=36.89 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=36.9
Q ss_pred cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHH
Q 028682 154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 192 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E 192 (205)
.+..-|+.|++|||.-.+|++|.+-.+=|.+.-+.||+.
T Consensus 214 ~~~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 214 EYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 568899999999999999999999999999999999985
No 45
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=75.00 E-value=7.1 Score=29.37 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=29.1
Q ss_pred ccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHHHHHHHHHhcch
Q 028682 46 LGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDN 111 (205)
Q Consensus 46 LGlp~~~pg~aDk~~~~~Ai~~Se~~~IeqamLedk~~~TD~e~Te~eIeeqV~r~S~~eyl~~~~ 111 (205)
.-+||||||.|-+..+++-.-.+ .-+ |..+.++.++|.++++++.
T Consensus 42 v~ipGFRkGKvP~~vi~k~yG~~--------------------v~~-ea~~~~i~~~~~~ai~e~~ 86 (121)
T 1p9y_A 42 VRIDGLRKGKVPMNIVAQRYGAS--------------------VRQ-DVLGDLMSRNFIDAIIKEK 86 (121)
T ss_dssp CCCTTSCTTCSCHHHHHHHHHHH--------------------HHH-HHHHHHHHHHHHHHHHHTT
T ss_pred CccCCcCCCCCCHHHHHHHHHHH--------------------HHH-HHHHHHHHHHHHHHHHHcC
Confidence 46899999999988766555321 111 2224455777888887754
No 46
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=74.47 E-value=5.5 Score=27.75 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=34.2
Q ss_pred cchHHHHHHHHhcchHHHHHHHHHhhcC-ChhHHHHHHHHhC
Q 028682 154 VLSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLETG 194 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs~~qvieAysifGD-~~d~~~~yl~E~~ 194 (205)
+-++-+++|+.|||.-++|.-|...=|. .++--+-||.-++
T Consensus 8 vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 8 VNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp CCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhc
Confidence 4566789999999999999999999887 6777788887653
No 47
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=67.62 E-value=5.7 Score=29.80 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=16.4
Q ss_pred cchHHHHHHHHhcchHHHHHH
Q 028682 154 VLSNSMQMVLSMGFSYLQVIE 174 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs~~qvie 174 (205)
..++-|+.++.|||.+.+|=.
T Consensus 26 m~s~vV~~alemGf~~~~V~~ 46 (104)
T 2kna_A 26 FQNPMVQEAIRMGFSFKDIKK 46 (104)
T ss_dssp HHCTHHHHHHHTTCCHHHHHH
T ss_pred HcCHHHHHHHHcCccHHHHHH
Confidence 367789999999998766533
No 48
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=59.43 E-value=1.9 Score=36.01 Aligned_cols=38 Identities=24% Similarity=0.109 Sum_probs=0.0
Q ss_pred chHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHH
Q 028682 155 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 192 (205)
Q Consensus 155 l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E 192 (205)
+..-|+.+++|||.-.+++.|.+-.|-|.+..+..|+.
T Consensus 177 ~~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~ 214 (216)
T 2pwq_A 177 REVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLE 214 (216)
T ss_dssp --------------------------------------
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhc
Confidence 35778999999999999999999999999999988875
No 49
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=58.86 E-value=8.9 Score=37.60 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=35.9
Q ss_pred cchHHHHHHHHhcchHHHHHHHHHhhcCChhHHHHHHHH
Q 028682 154 VLSNSMQMVLSMGFSYLQVIEAYSIFGDDVDSMVCYLLE 192 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs~~qvieAysifGD~~d~~~~yl~E 192 (205)
.-...+.+|.+|||+..|+..|...-+.|++..+.||+.
T Consensus 719 ~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs 757 (854)
T 3ihp_A 719 PPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS 757 (854)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhc
Confidence 346789999999999999999999999999999999986
No 50
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=56.44 E-value=10 Score=27.95 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=15.2
Q ss_pred ccCCCCCCCcccHHHHHHHH
Q 028682 46 LGFSCLRGTNVDKDQVKAAI 65 (205)
Q Consensus 46 LGlp~~~pg~aDk~~~~~Ai 65 (205)
.-+||||||.|-+..+++-.
T Consensus 39 ~~ipGFRkGKvP~~vi~k~y 58 (109)
T 2nsc_A 39 VEIPGFRKGRIPKNVLKMKL 58 (109)
T ss_dssp CCCTTSCTTCCCHHHHHHHH
T ss_pred CCCCCcCCCCCCHHHHHHHH
Confidence 35899999999987655433
No 51
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=55.75 E-value=7.7 Score=32.31 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=24.6
Q ss_pred hHHHHHHHHhcchHHHHHHHHHhhcCCh
Q 028682 156 SNSMQMVLSMGFSYLQVIEAYSIFGDDV 183 (205)
Q Consensus 156 ~~~~q~~l~mGFs~~qvieAysifGD~~ 183 (205)
...|+.++.|||.-.+|++|.+-.|=|-
T Consensus 170 ~~~v~~~~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 170 HDLIDEFESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 4688999999999999999999887654
No 52
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=55.42 E-value=3.7 Score=28.48 Aligned_cols=17 Identities=53% Similarity=0.745 Sum_probs=14.4
Q ss_pred cccchHHHHHHHHhcch
Q 028682 152 DTVLSNSMQMVLSMGFS 168 (205)
Q Consensus 152 ~~~l~~~~q~~l~mGFs 168 (205)
+.-+..++..+++|||+
T Consensus 7 D~rl~~al~qMl~MGF~ 23 (52)
T 1q02_A 7 DPRLIESLSQMLSMGFS 23 (52)
T ss_dssp CHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHcCCC
Confidence 34488999999999997
No 53
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=54.90 E-value=13 Score=36.38 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=33.4
Q ss_pred chHHHHHHHHhcchHHHHHHHHHhhcC-ChhHHHHHHHHh
Q 028682 155 LSNSMQMVLSMGFSYLQVIEAYSIFGD-DVDSMVCYLLET 193 (205)
Q Consensus 155 l~~~~q~~l~mGFs~~qvieAysifGD-~~d~~~~yl~E~ 193 (205)
-...+++|++|||+..+...|...-|. +++.-++||++-
T Consensus 652 d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~h 691 (854)
T 3ihp_A 652 DESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSH 691 (854)
T ss_dssp -CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhc
Confidence 345799999999999999999888776 499999999886
No 54
>4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis}
Probab=53.98 E-value=5.9 Score=36.44 Aligned_cols=47 Identities=38% Similarity=0.538 Sum_probs=16.0
Q ss_pred eeeeecCCCccccccCCCCCc-ccccc-----cCCCCCCCcccHHHHHHHHHHH
Q 028682 21 IRLSYHHGNHYNSLVDPRRMT-VGAGL-----GFSCLRGTNVDKDQVKAAIKAQ 68 (205)
Q Consensus 21 IRLSYH~g~HYNSIvdP~~~t-VGvGL-----Glp~~~pg~aDk~~~~~Ai~~S 68 (205)
.|=|-|+--|-++.|||+.|- ||+|- ..+.+.+-.+ .+|+..||+.-
T Consensus 1 ~~~~~~~~~~ma~mvdPRtPVIVGvG~t~~r~~~g~~~~~s~-~dL~a~Ai~~A 53 (520)
T 4egv_A 1 MRGSHHHHHHMASMVDPRTPVIVGVGQFTERIDLDGYRGMSS-VELATEAAKAA 53 (520)
T ss_dssp --------------CCTTCEEEEEEEEEEC--------CCCH-HHHHHHHHHHH
T ss_pred CCCcccchhhhhccCCCCCeEEEEeeeccccCCCCCCCCCCH-HHHHHHHHHHH
Confidence 366889999999999998775 45541 1122222222 35777777653
No 55
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=53.48 E-value=5.6 Score=29.51 Aligned_cols=46 Identities=7% Similarity=0.096 Sum_probs=28.3
Q ss_pred ccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHHHHHHHHHhcch
Q 028682 46 LGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDN 111 (205)
Q Consensus 46 LGlp~~~pg~aDk~~~~~Ai~~Se~~~IeqamLedk~~~TD~e~Te~eIeeqV~r~S~~eyl~~~~ 111 (205)
.-+||||||.|-+..+++-.-. + ..-+ |..+.++.+++.+.++++.
T Consensus 38 ~~ipGFRkGKvP~~vi~k~yG~------------~-------~v~~-ea~~~~i~~~~~~ai~e~~ 83 (112)
T 2d3o_1 38 VRVPGFRPGKAPRKVIENRVGK------------G-------YVES-QVRDRLLETHYSQGLRELG 83 (112)
T ss_dssp SCBTTBCTTCCCSTTHHHHTTT------------T-------SSHH-HHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCcCCCCCCHHHHHHHhCH------------H-------HHHH-HHHHHHHHHHHHHHHHHcC
Confidence 3589999999988765443321 1 1222 3334456778888888753
No 56
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=51.31 E-value=12 Score=31.97 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=31.7
Q ss_pred chHHHHHHHHhcchHHHHHHHH-Hhhc---CChhHHHHHHHHhCcc
Q 028682 155 LSNSMQMVLSMGFSYLQVIEAY-SIFG---DDVDSMVCYLLETGSS 196 (205)
Q Consensus 155 l~~~~q~~l~mGFs~~qvieAy-sifG---D~~d~~~~yl~E~~~~ 196 (205)
-.++++.|.++||+..+++.++ .++. ++||.++.||.+.|-+
T Consensus 19 ~~~~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s 64 (343)
T 3mva_O 19 NEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGAS 64 (343)
T ss_dssp -CCHHHHHHHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCC
Confidence 4567889999999999888775 2233 4789999999888754
No 57
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=41.41 E-value=17 Score=32.00 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=36.2
Q ss_pred cchHHHHHHHHhcchHHHHHHHHH----hhcCChhHHHHHHHHhCccc
Q 028682 154 VLSNSMQMVLSMGFSYLQVIEAYS----IFGDDVDSMVCYLLETGSSS 197 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs~~qvieAys----ifGD~~d~~~~yl~E~~~~~ 197 (205)
.+-..|+.|+.|||+-.|+-.+.+ |+..+...+|.||...|-+.
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~~l~~~i~~L~~LGls~ 92 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQQLLDIISEFILLGLNP 92 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHHHHHHHHHHHHHTTCCH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchhHHHHHHHHHHHcCCCH
Confidence 367789999999999999988876 55667788999999988543
No 58
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=39.90 E-value=51 Score=29.23 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=29.4
Q ss_pred ccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHHHHHHHHHhcch
Q 028682 46 LGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDN 111 (205)
Q Consensus 46 LGlp~~~pg~aDk~~~~~Ai~~Se~~~IeqamLedk~~~TD~e~Te~eIeeqV~r~S~~eyl~~~~ 111 (205)
.-+||||||.|-+..+++=.-.+ .-++ .-+.++.++|.+++++++
T Consensus 42 ~~ipGFRkGKvP~~~i~k~yG~~--------------------v~~e-a~~~~~~~~~~~ai~e~~ 86 (392)
T 1t11_A 42 RRFDGFRKGKVPMKMVAKMYGKA--------------------VRQD-VLGEVMQRHFIEAIVKEK 86 (392)
T ss_dssp CCCTTSCSSCCCHHHHHHHHHHH--------------------HHHH-HHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCHHHHHHHHhHH--------------------HHHH-HHHHHHHHHHHHHHHHcC
Confidence 46899999999988766554321 1122 223455778888888754
No 59
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=34.86 E-value=29 Score=25.02 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=28.3
Q ss_pred ccchHHHHHHHHh--cchHHHHHHHHHhhcCChhHHHHHHHHh
Q 028682 153 TVLSNSMQMVLSM--GFSYLQVIEAYSIFGDDVDSMVCYLLET 193 (205)
Q Consensus 153 ~~l~~~~q~~l~m--GFs~~qvieAysifGD~~d~~~~yl~E~ 193 (205)
-.+.+.|.+|... -+.-.+|...-.-|++||+.+|++|+|-
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 3566667766654 2233445555566899999999999995
No 60
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=34.15 E-value=75 Score=21.59 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=33.2
Q ss_pred ccchHHHHHHHHhcc---hHHHHHHHHHhhcCChhHHHHHHHHhC
Q 028682 153 TVLSNSMQMVLSMGF---SYLQVIEAYSIFGDDVDSMVCYLLETG 194 (205)
Q Consensus 153 ~~l~~~~q~~l~mGF---s~~qvieAysifGD~~d~~~~yl~E~~ 194 (205)
......++.|.+| | ....+-.++.--+.|+|.-|+-|++.-
T Consensus 7 ~~~ee~l~~L~em-FP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~ 50 (59)
T 1wgl_A 7 GCSEEDLKAIQDM-FPNMDQEVIRSVLEAQRGNKDAAINSLLQMG 50 (59)
T ss_dssp SSCHHHHHHHHHH-CSSSCHHHHHHHHTTTTTCHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHcCc
Confidence 3456789999999 8 555566667788999999999999983
No 61
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=32.15 E-value=22 Score=28.17 Aligned_cols=31 Identities=23% Similarity=0.180 Sum_probs=23.8
Q ss_pred chHHHHHHHHhcchHHHHHHHHHhhcCChhH
Q 028682 155 LSNSMQMVLSMGFSYLQVIEAYSIFGDDVDS 185 (205)
Q Consensus 155 l~~~~q~~l~mGFs~~qvieAysifGD~~d~ 185 (205)
....++.|+.-||+++.+-++..-+..++|+
T Consensus 139 ~~K~~~~L~rrGF~~~~I~~vl~~l~~~~~~ 169 (177)
T 3e3v_A 139 QNKIKQSLLTKGFSYDIIDTIIQELDLIFDD 169 (177)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCcCCCCc
Confidence 4466889999999999999998877777664
No 62
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=27.93 E-value=9 Score=30.31 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=28.6
Q ss_pred CCccccc--------c-CCCCCcccccccCCCCCCCcccHHHHHHH
Q 028682 28 GNHYNSL--------V-DPRRMTVGAGLGFSCLRGTNVDKDQVKAA 64 (205)
Q Consensus 28 g~HYNSI--------v-dP~~~tVGvGLGlp~~~pg~aDk~~~~~A 64 (205)
..|-||| + |+.+--|-|-||.|. |..+|.+.+++.
T Consensus 33 AI~~nslp~~~~~~g~~~~~~M~V~V~vgVp~--pe~vD~e~v~a~ 76 (122)
T 3c8l_A 33 AIAHNALPGVWEVAGLSHPNEMIIEVQVAVPY--PEQVREEEVLAV 76 (122)
T ss_dssp HHTTCCCSSHHHHHTCSSGGGSEEEEEEEESS--GGGCCHHHHHTT
T ss_pred HHhhhcchhHHHHCCCCChhceEEEEEEeCCC--hhhcCHHHHHhh
Confidence 4577888 6 788888999999994 999999987754
No 63
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=27.34 E-value=1.2e+02 Score=24.20 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=12.7
Q ss_pred CCcccccccCCCCCCCcccHHHHHHHHHHH-HHHHHHHHH
Q 028682 39 RMTVGAGLGFSCLRGTNVDKDQVKAAIKAQ-QDQQIDNAL 77 (205)
Q Consensus 39 ~~tVGvGLGlp~~~pg~aDk~~~~~Ai~~S-e~~~Ieqam 77 (205)
+|++=.+-|||++ .++. -++|++|-+.+ +.+.+++.|
T Consensus 27 ~~~~m~~~~~~~m-~gnm-~~mmkQAQkmQ~km~k~QeeL 64 (143)
T 1ybx_A 27 KAGLMAKGGFPGF-GGNI-NNLVKQAQKMQRDMERVQEEL 64 (143)
T ss_dssp -----------------C-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcCCccc-chhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5666555678887 4433 35788887765 444555555
No 64
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=27.13 E-value=1.1e+02 Score=20.72 Aligned_cols=37 Identities=8% Similarity=0.091 Sum_probs=26.9
Q ss_pred cchHHHHHHHHhcchHHHHHHHHHhh-----cCChhHHHHHH
Q 028682 154 VLSNSMQMVLSMGFSYLQVIEAYSIF-----GDDVDSMVCYL 190 (205)
Q Consensus 154 ~l~~~~q~~l~mGFs~~qvieAysif-----GD~~d~~~~yl 190 (205)
.....+.-|++.||+-.++-.|..-+ +.+++.+|-.-
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~A 57 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEA 57 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 45678999999999887777776544 34677776543
No 65
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=26.65 E-value=41 Score=24.32 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHHHHHHHH-------HHHHHhccccCCcHHHHHHHHHHHHHHH
Q 028682 56 VDKDQVKAAIKAQQDQQI-------DNALLAEGRFYSDLELTEKEIECMVMEV 101 (205)
Q Consensus 56 aDk~~~~~Ai~~Se~~~I-------eqamLedk~~~TD~e~Te~eIeeqV~r~ 101 (205)
.-.++|..|++==++-.+ -.++|+.| -+|++||++...|+
T Consensus 13 ~Re~li~~Av~FLqdp~V~~sp~~~K~~FL~sK------GLt~eEI~~Al~ra 59 (70)
T 2w84_A 13 PREPLIATAVKFLQNSRVRQSPLATRRAFLKKK------GLTDEEIDMAFQQS 59 (70)
T ss_dssp CCHHHHHHHHHHHCSTTGGGSCHHHHHHHHHHT------TCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCChhhhhCCHHHHHHHHHHc------CCCHHHHHHHHHHc
Confidence 345788889864333322 23678777 68999999988654
No 66
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A
Probab=23.85 E-value=1.2e+02 Score=23.33 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=39.8
Q ss_pred ccCCCCCcccccccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHHHH
Q 028682 34 LVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVS 102 (205)
Q Consensus 34 IvdP~~~tVGvGLGlp~~~pg~aDk~~~~~Ai~~Se~~~IeqamLedk~~~TD~e~Te~eIeeqV~r~S 102 (205)
-|+|++.||=+ =-..++...|.+..++|+++.|... +++-- +-...|+...+.++.+.++|-.
T Consensus 68 ev~~~~vtIla---~~A~~~~dID~~~a~~a~~~Ae~~l-~~~~~--~~~~~~~~~a~~aL~rA~arl~ 130 (138)
T 2rq6_A 68 EVENNEVTILV---NGAERGDTIDLEKAKAEFAAAQAAL-AQAEQ--GESKQAKIQATQAFRRARARLQ 130 (138)
T ss_dssp EECSSCEEEEE---SCEECSTTCCHHHHHHHHHHHHHHH-HHHHH--HSCCSCHHHHHHHHHHHHHHHH
T ss_pred EEECCEEEEEE---eeEEEhhhCCHHHHHHHHHHHHHHH-HhCcc--CCCHHHHHHHHHHHHHHHHHHH
Confidence 35677777733 3345677788888888887765432 22211 1134678888888888876543
No 67
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.67 E-value=2.2e+02 Score=19.82 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=30.6
Q ss_pred cccchHHHHHHHHhcch-H-HHHHH-HHHhhcCChhHHHHHHHHh
Q 028682 152 DTVLSNSMQMVLSMGFS-Y-LQVIE-AYSIFGDDVDSMVCYLLET 193 (205)
Q Consensus 152 ~~~l~~~~q~~l~mGFs-~-~qvie-AysifGD~~d~~~~yl~E~ 193 (205)
.....+.++.|.+| |+ + .++|+ .+.--|.|+|.-|.-|++.
T Consensus 15 ~~~~~~~v~~L~~M-FP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 15 RLEFNQAMDDFKTM-FPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCSHHHHHHHHHH-CSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 45788999999999 92 2 12333 3446689999999999987
No 68
>2zz8_A LIPL32 protein; outer-membrane protein, unknown function; 2.01A {Leptospira interrogans} PDB: 3frl_A* 2wfk_A
Probab=20.66 E-value=41 Score=29.30 Aligned_cols=9 Identities=56% Similarity=0.792 Sum_probs=7.4
Q ss_pred CCCcccccc
Q 028682 27 HGNHYNSLV 35 (205)
Q Consensus 27 ~g~HYNSIv 35 (205)
+|+||||+.
T Consensus 154 ~g~~YNSLl 162 (241)
T 2zz8_A 154 RHNKYNSLT 162 (241)
T ss_dssp SCCCTTCEE
T ss_pred ccCccceee
Confidence 789999964
No 69
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=20.59 E-value=45 Score=22.90 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHHHHHHHH-------HHHHHhccccCCcHHHHHHHHHHHHHH
Q 028682 56 VDKDQVKAAIKAQQDQQI-------DNALLAEGRFYSDLELTEKEIECMVME 100 (205)
Q Consensus 56 aDk~~~~~Ai~~Se~~~I-------eqamLedk~~~TD~e~Te~eIeeqV~r 100 (205)
.-.++|..|++==++-.+ -.++|+.| -+|++||++.+.|
T Consensus 8 ~Re~li~~Av~FL~dp~V~~sp~~~K~~FL~sK------GLt~~EI~~Al~r 53 (54)
T 3ff5_A 8 FREPLIATAVKFLQNSRVRQSPLATRRAFLKKK------GLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHHHHHCTTGGGSCHHHHHHHHHHT------TCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCChhhhcCCHHHHHHHHHHc------CCCHHHHHHHHHc
Confidence 334678888764333332 22667777 6789999988765
No 70
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=20.27 E-value=1.4e+02 Score=20.44 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=17.8
Q ss_pred HHHHHHHHhcchHHHHHHHHHhh
Q 028682 157 NSMQMVLSMGFSYLQVIEAYSIF 179 (205)
Q Consensus 157 ~~~q~~l~mGFs~~qvieAysif 179 (205)
.-|+.+-.+|||+.+.-+-....
T Consensus 7 ~~I~~lr~lGfsL~eIk~~l~~~ 29 (99)
T 1q08_A 7 KFIRHARQLGFSLESIRELLSIR 29 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHH
Confidence 45788999999998876665554
Done!