BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028684
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1,
Mg-F Complex
Length = 194
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 30 LVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRM 89
++L+ S+ + D + P GG E +E S AA RE EEAGV+G L +G +E
Sbjct: 56 VLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLG-RLVGIFE------- 107
Query: 90 NSCNSKEGGCRGYMFALEVTEELESWPEQANY--KRIWLSVEEAFKSCRYDWMIDA 143
++E R Y++ L VTE LE W + N KR W +E+A K +Y + A
Sbjct: 108 ----NQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQYHKPVQA 159
>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
Length = 138
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 26/146 (17%)
Query: 9 CIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAG 68
C+ ++ E+ DE ++L+ S+ D + P GG E +E AA RE EEAG
Sbjct: 15 CLCFRSEQEDE----------VLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAG 64
Query: 69 VRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANY--KRIWL 126
V+G L LG +E + + R Y++ L VTE LE W + N KR W
Sbjct: 65 VKGKLG-RLLGIFENQDRKH-----------RTYVYVLTVTEILEDWEDSVNIGRKREWF 112
Query: 127 SVEEAFK--SCRYDWMIDALKKFLLG 150
VE+A K C + L+K LG
Sbjct: 113 KVEDAIKVLQCHKPVHAEYLEKLKLG 138
>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
Length = 136
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 23/127 (18%)
Query: 9 CIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAG 68
C+ ++ E+ DE ++L+ S+ D + P GG E +E AA RE EEAG
Sbjct: 7 CLCFRSEREDE----------VLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAG 56
Query: 69 VRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANY--KRIWL 126
V+G L LG +E +++ R Y++ L VTE LE W + + KR W
Sbjct: 57 VKGKLG-RLLGVFE----------QNQDPEHRTYVYVLTVTELLEDWEDSVSIGRKREWF 105
Query: 127 SVEEAFK 133
VE+A K
Sbjct: 106 KVEDAIK 112
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From
Aquifex Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From
Aquifex Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From
Aquifex Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From
Aquifex Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 31 VLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRG-LLD 74
VL+I TP+ + FPKG E E E A RE EE GV+G +LD
Sbjct: 17 VLLIKTPS-NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILD 60
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 33.5 bits (75), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 43 VFPKGGWEDDETVSEAACREALEEAGVR 70
VFPKG E E++ EAA RE EE GVR
Sbjct: 27 VFPKGHPEPGESLEEAAVREVWEETGVR 54
>pdb|3VSG|B Chain B, Crystal Structure Of Iron Free 1,6-apd,
2-animophenol-1,6-dioxygenase
pdb|3VSG|D Chain D, Crystal Structure Of Iron Free 1,6-apd,
2-animophenol-1,6-dioxygenase
pdb|3VSH|B Chain B, Crystal Structure Of Native 1,6-apd (with Iron),
2-animophenol-1,6- Dioxygenase
pdb|3VSH|D Chain D, Crystal Structure Of Native 1,6-apd (with Iron),
2-animophenol-1,6- Dioxygenase
pdb|3VSI|B Chain B, Crystal Structure Of Native 1,6-apd
(2-animophenol-1,6-dioxygenase) Complex With
4-nitrocatechol
pdb|3VSI|D Chain D, Crystal Structure Of Native 1,6-apd
(2-animophenol-1,6-dioxygenase) Complex With
4-nitrocatechol
pdb|3VSJ|B Chain B, Crystal Structure Of 1,6-apd
(2-animophenol-1,6-dioxygenase) Complexed With
Intermediate Products
pdb|3VSJ|D Chain D, Crystal Structure Of 1,6-apd
(2-animophenol-1,6-dioxygenase) Complexed With
Intermediate Products
Length = 312
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 59 ACREALEEAGVRG-LLDENPLGEWEFRSKSRMNSCNSKE--GGCRGYMFALEVTEELESW 115
A REA+ + G + LL N L W F + + SKE GY + + + E +
Sbjct: 173 ATREAIRKTGRKAVLLASNTLSHWHFHEEPTIPEDMSKEYPATMAGYQWDIRMIELMRQG 232
Query: 116 PEQANYKRIWLSVEEAF---KSCRYDWMIDALK 145
+K + ++EAF KS + WM A++
Sbjct: 233 KTSEVFKLLPQFIDEAFAEVKSGAFTWMHAAMQ 265
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 31 VLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAG 68
V ++ P DD +PKG E +ET AA RE EE G
Sbjct: 40 VCIVHRPKYDDWSWPKGKLEQNETHRHAAVREIGEETG 77
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 43 VFPKGGWEDDETVSEAACREALEEAGVR 70
VFPKG E E++ EAA RE E+ GVR
Sbjct: 27 VFPKGHPEPGESLEEAAVREVWEQTGVR 54
>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|B Chain B, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|C Chain C, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|D Chain D, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
Length = 189
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 26 EKKVLVLMIS-TPNRDDLVFPKGGWEDDETVSEAACREALEEAGVR 70
E KVL+ + P R P G E++ET+ + A RE LEEA R
Sbjct: 50 ENKVLLCKRAIAPYRGKWTLPAGFXENNETLVQGAARETLEEANAR 95
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 31 VLMI---STPNRDDLVFPKGGWEDDETVSEAACREALEEAGV 69
+LM+ + P +D P G E DET+++A RE EE +
Sbjct: 221 ILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNI 262
>pdb|3FK9|A Chain A, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
pdb|3FK9|B Chain B, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
Length = 188
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 22 NCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGV 69
NC + VL++ P R V P G E E++ E RE EE G+
Sbjct: 8 NCIVVDHDQVLLLQKPRRGWWVAPGGKMEAGESILETVKREYWEETGI 55
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 27 KKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVR 70
+K+LV+ ++ FP G E +E + + A RE EE G++
Sbjct: 39 RKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIK 82
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 45 PKGGWEDDETVSEAACREALEEAGVRG 71
P G E DET+ EAA RE EE G+
Sbjct: 34 PAGHLEADETLVEAAARELWEETGISA 60
>pdb|3SON|A Chain A, Crystal Structure Of A Hypothetical Nudix Hydrolase
(Lmof2365_2679) From Listeria Monocytogenes (Atcc
19115) At 1.70 A Resolution
pdb|3SON|B Chain B, Crystal Structure Of A Hypothetical Nudix Hydrolase
(Lmof2365_2679) From Listeria Monocytogenes (Atcc
19115) At 1.70 A Resolution
Length = 149
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 44 FPKGGWEDDETVSEAACREALEEAGV 69
F GG ED+E +SE A RE++EE +
Sbjct: 35 FVAGGGEDEEAISETAKRESIEELNL 60
>pdb|1JRK|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|C Chain C, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|D Chain D, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1K26|A Chain A, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K26|B Chain B, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K2E|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
pdb|1K2E|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
Length = 156
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 31 VLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGV--------RGLLDEN 76
VL++ ++P G E +ET EA RE EE G+ G++DEN
Sbjct: 14 VLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDEN 67
>pdb|2B06|A Chain A, Crystal Structure Of The MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
Length = 155
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 25 MEKKVLVLMISTP--NR-DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENP 77
+E + +V+ P NR FP G E+DE +E+ RE EE GL +NP
Sbjct: 18 LETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEET---GLTIQNP 70
>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From
Deinococcus Radiodurans
pdb|1SOI|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complex
With Sm+3
pdb|1SU2|A Chain A, Crystal Structure Of The Nudix Hydrolase Dr1025 In
Complex With Atp
pdb|1SU2|B Chain B, Crystal Structure Of The Nudix Hydrolase Dr1025 In
Complex With Atp
pdb|1SZ3|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
pdb|1SZ3|B Chain B, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
Length = 159
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 44 FPKGGWEDDETVSEAACREALEEAGVR 70
P G ED E +AA REA EE G+R
Sbjct: 47 IPSGAVEDGENPQDAAVREACEETGLR 73
>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM
BACILLUS Thuringiensis
Length = 153
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 32 LMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVR 70
L+ P + P G E ET EA RE EE G++
Sbjct: 35 LLFQYPGGEYWSLPAGAIEPGETPEEAVIREVWEETGLK 73
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 44 FPKGGWEDDETVSEAACREALEEAGVRGLLDE 75
FP G +D ET AA RE EE G +G + E
Sbjct: 94 FPAGLIDDGETPEAAALRELEEETGYKGDIAE 125
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 44 FPKGGWEDDETVSEAACREALEEAGVRGLLDE 75
FP G +D ET AA RE EE G +G + E
Sbjct: 94 FPAGLIDDGETPEAAALRELEEETGYKGDIAE 125
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 44 FPKGGWEDDETVSEAACREALEEAGVRGLLDE 75
FP G +D ET AA RE EE G +G + E
Sbjct: 96 FPAGLIDDGETPEAAALRELEEETGYKGDIAE 127
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 44 FPKGGWEDDETVSEAACREALEEAGVRGLLDE 75
FP G +D ET AA RE EE G +G + E
Sbjct: 81 FPAGLIDDGETPEAAALRELEEETGYKGDIAE 112
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 44 FPKGGWEDDETVSEAACREALEEAGVRGLLDE 75
FP G +D ET AA RE EE G +G + E
Sbjct: 82 FPAGLIDDGETPEAAALRELEEETGYKGDIAE 113
>pdb|1WPN|A Chain A, Crystal Structure Of The N-Terminal Core Of Bacillus
Subtilis Inorganic Pyrophosphatase
pdb|1WPN|B Chain B, Crystal Structure Of The N-Terminal Core Of Bacillus
Subtilis Inorganic Pyrophosphatase
Length = 188
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 9 CIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAG 68
C K + N K+EK++ LM+S D L+F D + AA +E E AG
Sbjct: 118 CTATILNKMYKENNVKIEKEIAGLMLSAIISDSLLFKSPTCTDQDV---AAAKELAEIAG 174
Query: 69 V 69
V
Sbjct: 175 V 175
>pdb|2AZW|A Chain A, Crystal Structure Of The Mutt/nudix Family Protein From
Enterococcus Faecalis
Length = 148
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 23 CKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGV 69
K E +VL + PN P G E ET EA RE LEE G+
Sbjct: 26 SKPENNTMVL-VQAPN-GAYFLPGGEIEGTETKEEAIHREVLEELGI 70
>pdb|2IW4|A Chain A, Crystal Structure Of Basillus Subtilis Family Ii Inorganic
Pyrophosphatase Mutant, H98q, In Complex With Pnp
pdb|2IW4|B Chain B, Crystal Structure Of Basillus Subtilis Family Ii Inorganic
Pyrophosphatase Mutant, H98q, In Complex With Pnp
Length = 309
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 22 NCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGV 69
N K+EK++ LM+S D L+F D + AA +E E AGV
Sbjct: 131 NVKIEKEIAGLMLSAIISDSLLFKSPTCTDQDV---AAAKELAEIAGV 175
>pdb|1WPM|A Chain A, Structure Of Bacillus Subtilis Inorganic Pyrophosphatase
pdb|1WPM|B Chain B, Structure Of Bacillus Subtilis Inorganic Pyrophosphatase
pdb|2HAW|A Chain A, Crystal Structure Of Family Ii Inorganic Pyrophosphatase
In Complex With Pnp
pdb|2HAW|B Chain B, Crystal Structure Of Family Ii Inorganic Pyrophosphatase
In Complex With Pnp
Length = 309
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 22 NCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGV 69
N K+EK++ LM+S D L+F D + AA +E E AGV
Sbjct: 131 NVKIEKEIAGLMLSAIISDSLLFKSPTCTDQDV---AAAKELAEIAGV 175
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 87 SRMNSCNSKEGGCRGYMFALEVTEELESW 115
SR ++ ++ G R Y F+ E EE E+W
Sbjct: 83 SRKHTFKAEHAGVRTYFFSAESPEEQEAW 111
>pdb|1VRQ|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96 In Complex With Folinic
Acid
pdb|1X31|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96
pdb|3AD7|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Methylthio Acetate
pdb|3AD8|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Pyrrole 2-Carboxylate
pdb|3AD9|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 Sarcosine-Reduced Form
pdb|3ADA|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Sulfite
Length = 964
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 50 EDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSK 86
+D E++ EA RE G+LD + LG+ E R K
Sbjct: 603 QDGESMDEAVYRECKAVRDSVGMLDASTLGKIEIRGK 639
>pdb|1DXH|A Chain A, Catabolic Ornithine Carbamoyltransferase From Pseudomonas
Aeruginosa
Length = 335
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 45 PKGGWEDDETVSEAACREALEEAGVRGLLDENP 77
PK W DE V++ C++ EE+G + L E+P
Sbjct: 188 PKALWPHDEFVAQ--CKKFAEESGAKLTLTEDP 218
>pdb|1ORT|A Chain A, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|B Chain B, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|C Chain C, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|D Chain D, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|E Chain E, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|F Chain F, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|G Chain G, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|H Chain H, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|I Chain I, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|J Chain J, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|K Chain K, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
pdb|1ORT|L Chain L, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa
Length = 335
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 45 PKGGWEDDETVSEAACREALEEAGVRGLLDENP 77
PK W DE V++ C++ EE+G + L E+P
Sbjct: 188 PKALWPHDEFVAQ--CKKFAEESGAKLTLTEDP 218
>pdb|1NQY|A Chain A, The Structure Of A Coa Pyrophosphatase From D.
Radiodurans
pdb|1NQZ|A Chain A, The Structure Of A Coa Pyrophosphatase From D.
Radiodurans Complexed With A Magnesium Ion
Length = 194
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 38 NRDDLVFPKGGWEDDETVSEAACREALEEAGV 69
++ + FP G + ET ++AA REA EE +
Sbjct: 62 HKGQIAFPGGSLDAGETPTQAALREAQEEVAL 93
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 87 SRMNSCNSKEGGCRGYMFALEVTEELESW 115
SR ++ ++ G R Y F+ E EE E+W
Sbjct: 72 SRKHTFKAEHAGVRTYFFSAESPEEQEAW 100
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 20 NKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGV 69
NK K +L+ P R+ P G +E+ ++ RE EE GV
Sbjct: 50 NKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGV 99
>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18
Length = 156
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 31 VLMISTPNRD---DLVFPKGGWEDDETVSEAACREALEEAGV 69
VL+I R+ P G E ET+ EA RE EEAG+
Sbjct: 34 VLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGL 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,445,098
Number of Sequences: 62578
Number of extensions: 245926
Number of successful extensions: 378
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 43
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)