Query 028684
Match_columns 205
No_of_seqs 254 out of 1424
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 15:22:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2839 Diadenosine and diphos 99.9 2.3E-24 5E-29 159.2 10.6 134 2-152 7-143 (145)
2 cd04666 Nudix_Hydrolase_9 Memb 99.9 2E-23 4.4E-28 154.3 14.4 121 5-140 1-121 (122)
3 cd03673 Ap6A_hydrolase Diadeno 99.9 4.3E-23 9.4E-28 153.0 15.5 130 4-149 1-131 (131)
4 cd03428 Ap4A_hydrolase_human_l 99.9 1.5E-21 3.2E-26 144.9 14.4 128 4-148 2-129 (130)
5 PRK09438 nudB dihydroneopterin 99.9 1.1E-21 2.3E-26 149.3 13.6 135 2-151 5-146 (148)
6 cd04684 Nudix_Hydrolase_25 Con 99.9 4.7E-21 1E-25 141.4 13.9 121 6-144 2-127 (128)
7 cd03674 Nudix_Hydrolase_1 Memb 99.9 2.2E-20 4.8E-25 140.6 14.8 130 4-149 2-138 (138)
8 cd04695 Nudix_Hydrolase_36 Mem 99.9 2.6E-20 5.7E-25 138.9 14.1 125 6-149 1-129 (131)
9 cd04680 Nudix_Hydrolase_21 Mem 99.8 2.3E-20 4.9E-25 136.5 12.6 106 28-144 11-117 (120)
10 cd03675 Nudix_Hydrolase_2 Cont 99.8 1.1E-19 2.4E-24 135.7 15.9 115 28-150 10-130 (134)
11 cd04700 DR1025_like DR1025 fro 99.8 2.9E-20 6.3E-25 140.8 12.6 117 3-141 12-132 (142)
12 cd03430 GDPMH GDP-mannose glyc 99.8 1.2E-19 2.6E-24 137.8 14.8 117 4-134 12-132 (144)
13 cd04681 Nudix_Hydrolase_22 Mem 99.8 5.1E-20 1.1E-24 136.8 11.8 123 6-147 3-129 (130)
14 cd04679 Nudix_Hydrolase_20 Mem 99.8 7.4E-20 1.6E-24 135.2 12.4 112 4-136 2-117 (125)
15 cd04673 Nudix_Hydrolase_15 Mem 99.8 1E-19 2.3E-24 133.3 12.9 115 6-139 2-119 (122)
16 cd04687 Nudix_Hydrolase_28 Mem 99.8 1.8E-19 3.8E-24 133.7 14.2 119 4-138 1-125 (128)
17 PF00293 NUDIX: NUDIX domain; 99.8 8.7E-20 1.9E-24 135.2 12.3 126 3-148 1-133 (134)
18 PRK15434 GDP-mannose mannosyl 99.8 2.1E-19 4.5E-24 138.5 14.6 118 5-136 18-139 (159)
19 cd04696 Nudix_Hydrolase_37 Mem 99.8 2.1E-19 4.5E-24 132.8 13.8 120 5-143 3-123 (125)
20 cd04676 Nudix_Hydrolase_17 Mem 99.8 1.5E-19 3.3E-24 133.2 12.9 127 4-145 2-128 (129)
21 cd03427 MTH1 MutT homolog-1 (M 99.8 1.2E-19 2.6E-24 135.9 12.6 113 28-149 11-126 (137)
22 cd03672 Dcp2p mRNA decapping e 99.8 2.8E-19 6E-24 135.9 14.5 110 5-136 2-113 (145)
23 PRK10546 pyrimidine (deoxy)nuc 99.8 3.9E-19 8.4E-24 132.8 14.3 126 1-152 1-130 (135)
24 PLN02325 nudix hydrolase 99.8 1.3E-19 2.8E-24 137.6 11.8 112 28-146 19-136 (144)
25 cd04672 Nudix_Hydrolase_14 Mem 99.8 1.7E-19 3.7E-24 133.0 12.1 115 4-138 2-116 (123)
26 cd04689 Nudix_Hydrolase_30 Mem 99.8 3.3E-19 7.2E-24 131.7 13.5 108 5-132 2-112 (125)
27 PRK15472 nucleoside triphospha 99.8 2.6E-19 5.7E-24 135.1 13.1 130 1-147 1-138 (141)
28 cd04664 Nudix_Hydrolase_7 Memb 99.8 1.8E-19 3.9E-24 133.8 11.6 124 5-144 2-128 (129)
29 cd04677 Nudix_Hydrolase_18 Mem 99.8 2E-19 4.3E-24 133.7 11.5 104 28-137 18-125 (132)
30 cd04688 Nudix_Hydrolase_29 Mem 99.8 6.4E-19 1.4E-23 130.3 13.8 104 29-138 12-122 (126)
31 cd03671 Ap4A_hydrolase_plant_l 99.8 9.1E-19 2E-23 133.2 15.0 121 2-136 1-133 (147)
32 cd04690 Nudix_Hydrolase_31 Mem 99.8 2.7E-19 5.8E-24 130.6 10.5 102 28-138 11-114 (118)
33 COG1051 ADP-ribose pyrophospha 99.8 4.5E-19 9.8E-24 134.7 11.8 110 4-135 10-123 (145)
34 cd04670 Nudix_Hydrolase_12 Mem 99.8 8.1E-19 1.8E-23 129.9 12.8 112 4-138 2-117 (127)
35 cd04686 Nudix_Hydrolase_27 Mem 99.8 1E-18 2.2E-23 130.4 13.2 112 6-134 2-119 (131)
36 cd04667 Nudix_Hydrolase_10 Mem 99.8 6E-19 1.3E-23 128.0 11.5 100 28-142 10-109 (112)
37 cd04669 Nudix_Hydrolase_11 Mem 99.8 9.4E-19 2E-23 128.9 12.4 106 6-138 2-118 (121)
38 cd04678 Nudix_Hydrolase_19 Mem 99.8 1.4E-18 3E-23 128.9 12.9 110 4-134 2-117 (129)
39 cd04511 Nudix_Hydrolase_4 Memb 99.8 8.9E-19 1.9E-23 130.5 11.1 102 4-132 13-117 (130)
40 cd04691 Nudix_Hydrolase_32 Mem 99.8 1.8E-18 3.9E-23 126.6 11.7 94 29-135 11-109 (117)
41 cd04683 Nudix_Hydrolase_24 Mem 99.8 2.1E-18 4.7E-23 126.3 11.9 100 28-135 10-115 (120)
42 cd04671 Nudix_Hydrolase_13 Mem 99.8 1.2E-18 2.6E-23 128.8 10.3 105 6-136 2-112 (123)
43 cd04682 Nudix_Hydrolase_23 Mem 99.8 2.7E-18 5.9E-23 126.4 11.8 98 28-135 11-115 (122)
44 cd03429 NADH_pyrophosphatase N 99.8 2.5E-18 5.3E-23 128.4 10.8 95 28-134 11-107 (131)
45 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 8.2E-18 1.8E-22 126.0 13.7 112 4-138 2-119 (137)
46 PRK10776 nucleoside triphospha 99.8 1.3E-17 2.9E-22 122.9 13.5 123 1-148 1-127 (129)
47 cd04661 MRP_L46 Mitochondrial 99.8 8.4E-18 1.8E-22 125.7 12.4 108 26-136 10-122 (132)
48 PRK00714 RNA pyrophosphohydrol 99.8 2.1E-17 4.6E-22 127.0 13.4 118 3-135 7-136 (156)
49 PRK00241 nudC NADH pyrophospha 99.8 1.8E-17 3.8E-22 136.9 13.4 111 28-150 142-255 (256)
50 cd02885 IPP_Isomerase Isopente 99.8 2.4E-17 5.1E-22 127.8 13.1 114 4-136 30-150 (165)
51 cd04697 Nudix_Hydrolase_38 Mem 99.7 1.9E-17 4.2E-22 122.7 11.2 109 6-138 2-116 (126)
52 TIGR00586 mutt mutator mutT pr 99.7 7.1E-17 1.5E-21 119.2 13.3 121 1-146 1-125 (128)
53 cd03426 CoAse Coenzyme A pyrop 99.7 2.4E-17 5.2E-22 126.8 11.0 97 28-134 15-118 (157)
54 PRK15393 NUDIX hydrolase YfcD; 99.7 1E-16 2.2E-21 126.0 13.9 115 28-153 48-170 (180)
55 PRK05379 bifunctional nicotina 99.7 1.3E-16 2.9E-21 136.8 15.5 124 5-148 204-338 (340)
56 cd04693 Nudix_Hydrolase_34 Mem 99.7 3.8E-17 8.2E-22 121.0 10.3 100 28-138 11-117 (127)
57 cd04692 Nudix_Hydrolase_33 Mem 99.7 1E-16 2.2E-21 121.5 12.0 119 3-135 1-128 (144)
58 cd04662 Nudix_Hydrolase_5 Memb 99.7 9.7E-17 2.1E-21 118.4 11.4 57 6-72 2-65 (126)
59 PRK11762 nudE adenosine nucleo 99.7 3.6E-16 7.8E-21 123.4 14.8 103 28-140 58-165 (185)
60 PRK03759 isopentenyl-diphospha 99.7 4.7E-16 1E-20 122.6 14.3 116 3-136 33-154 (184)
61 cd04699 Nudix_Hydrolase_39 Mem 99.7 2.8E-16 6.1E-21 115.9 11.7 99 28-135 12-115 (129)
62 cd04665 Nudix_Hydrolase_8 Memb 99.7 2.7E-16 5.8E-21 115.5 11.2 93 28-131 10-102 (118)
63 TIGR00052 nudix-type nucleosid 99.7 2E-16 4.3E-21 124.8 10.7 115 4-140 44-171 (185)
64 cd03425 MutT_pyrophosphohydrol 99.7 8.4E-16 1.8E-20 112.1 13.3 107 28-146 12-122 (124)
65 PRK10729 nudF ADP-ribose pyrop 99.7 2.5E-16 5.5E-21 125.8 11.3 114 5-140 50-177 (202)
66 cd02883 Nudix_Hydrolase Nudix 99.7 3.4E-16 7.5E-21 113.3 10.4 110 6-136 2-114 (123)
67 cd04694 Nudix_Hydrolase_35 Mem 99.7 8.4E-16 1.8E-20 116.5 12.2 108 28-137 12-134 (143)
68 cd04685 Nudix_Hydrolase_26 Mem 99.7 9E-16 2E-20 115.0 11.6 109 5-134 1-123 (133)
69 TIGR02705 nudix_YtkD nucleosid 99.7 5.8E-15 1.3E-19 113.0 14.9 93 29-135 35-128 (156)
70 TIGR02150 IPP_isom_1 isopenten 99.6 2.6E-15 5.6E-20 115.7 11.6 113 3-138 26-146 (158)
71 PRK08999 hypothetical protein; 99.6 1.1E-14 2.4E-19 123.6 13.8 122 1-147 2-127 (312)
72 PRK10707 putative NUDIX hydrol 99.6 1.5E-14 3.3E-19 114.5 12.8 113 3-136 29-148 (190)
73 PRK15009 GDP-mannose pyrophosp 99.6 9.4E-15 2E-19 115.8 11.1 114 4-140 45-172 (191)
74 cd03670 ADPRase_NUDT9 ADP-ribo 99.6 2.7E-14 5.8E-19 112.3 13.4 119 26-149 46-184 (186)
75 KOG3084 NADH pyrophosphatase I 99.6 1.1E-16 2.4E-21 132.0 -2.1 132 28-200 199-333 (345)
76 cd03676 Nudix_hydrolase_3 Memb 99.6 9.7E-14 2.1E-18 109.0 14.6 121 3-137 31-161 (180)
77 cd04663 Nudix_Hydrolase_6 Memb 99.6 4.7E-14 1E-18 104.4 10.9 44 28-72 13-56 (126)
78 cd04674 Nudix_Hydrolase_16 Mem 99.5 1.8E-13 4E-18 100.3 11.7 44 30-73 16-62 (118)
79 COG2816 NPY1 NTP pyrophosphohy 99.5 6.1E-14 1.3E-18 115.3 5.2 94 30-135 156-251 (279)
80 PLN02709 nudix hydrolase 99.4 3E-12 6.6E-17 103.0 10.5 98 27-134 49-155 (222)
81 PLN03143 nudix hydrolase; Prov 99.4 1.9E-11 4.2E-16 102.2 14.8 45 28-72 142-191 (291)
82 COG0494 MutT NTP pyrophosphohy 99.4 7.5E-12 1.6E-16 92.7 11.2 45 29-73 24-70 (161)
83 PLN02552 isopentenyl-diphospha 99.4 2.9E-11 6.4E-16 99.1 14.2 135 3-150 55-226 (247)
84 COG4119 Predicted NTP pyrophos 99.3 7.5E-11 1.6E-15 85.6 10.1 59 4-72 3-68 (161)
85 PLN02791 Nudix hydrolase homol 99.2 5.9E-10 1.3E-14 103.7 14.5 118 3-135 31-159 (770)
86 KOG3041 Nucleoside diphosphate 99.0 6.4E-09 1.4E-13 81.0 12.5 101 27-135 86-195 (225)
87 cd03431 DNA_Glycosylase_C DNA 99.0 1.8E-08 3.8E-13 72.8 12.9 100 28-145 13-116 (118)
88 KOG3069 Peroxisomal NUDIX hydr 98.8 3.5E-08 7.6E-13 79.0 9.5 116 4-135 42-164 (246)
89 KOG0648 Predicted NUDIX hydrol 98.7 4.9E-09 1.1E-13 87.0 2.7 111 4-135 115-232 (295)
90 COG1443 Idi Isopentenyldiphosp 98.7 1.6E-07 3.6E-12 72.0 8.6 125 5-147 34-172 (185)
91 PLN02839 nudix hydrolase 98.5 1.9E-06 4E-11 74.0 11.3 105 27-136 216-329 (372)
92 KOG4195 Transient receptor pot 98.2 1.9E-06 4.1E-11 68.5 4.2 39 29-67 139-177 (275)
93 PF14815 NUDIX_4: NUDIX domain 98.2 2.1E-05 4.6E-10 56.8 9.2 102 28-144 8-113 (114)
94 KOG2937 Decapping enzyme compl 97.7 7.9E-06 1.7E-10 68.6 0.1 46 27-72 93-138 (348)
95 PF13869 NUDIX_2: Nucleotide h 97.1 0.0023 5E-08 50.2 6.8 116 4-133 43-169 (188)
96 COG4112 Predicted phosphoester 96.9 0.018 3.8E-07 44.1 9.9 100 28-134 71-187 (203)
97 KOG0142 Isopentenyl pyrophosph 96.8 0.011 2.3E-07 46.8 8.3 90 53-148 103-203 (225)
98 KOG4432 Uncharacterized NUDIX 96.5 0.012 2.6E-07 49.3 7.1 88 42-138 286-380 (405)
99 KOG4548 Mitochondrial ribosoma 96.1 0.082 1.8E-06 43.3 9.9 106 27-136 137-249 (263)
100 KOG1689 mRNA cleavage factor I 96.0 0.016 3.5E-07 44.6 5.2 40 29-69 84-123 (221)
101 KOG4432 Uncharacterized NUDIX 95.8 0.036 7.8E-07 46.5 6.8 61 43-111 82-142 (405)
102 KOG4313 Thiamine pyrophosphoki 94.3 0.23 4.9E-06 40.7 7.3 104 28-135 147-259 (306)
103 PRK10880 adenine DNA glycosyla 94.0 0.88 1.9E-05 39.5 10.8 99 28-146 241-343 (350)
104 PRK13910 DNA glycosylase MutY; 87.4 14 0.0003 31.3 11.4 27 123-149 257-283 (289)
105 PF14443 DBC1: DBC1 81.9 13 0.00029 27.3 7.7 45 29-73 8-60 (126)
106 PF03487 IL13: Interleukin-13; 69.7 4.5 9.8E-05 23.5 2.0 25 43-67 12-36 (43)
107 PF07026 DUF1317: Protein of u 66.0 12 0.00027 23.6 3.6 33 31-66 13-45 (60)
108 KOG2937 Decapping enzyme compl 39.5 11 0.00024 32.3 0.4 42 31-72 253-296 (348)
109 COG1194 MutY A/G-specific DNA 34.3 1.1E+02 0.0023 26.7 5.4 24 28-51 246-273 (342)
110 PF06453 LT-IIB: Type II heat- 27.1 62 0.0013 23.0 2.3 35 28-63 56-90 (122)
111 PF12860 PAS_7: PAS fold 26.9 31 0.00066 24.0 0.9 44 5-61 4-47 (115)
112 PF09505 Dimeth_Pyl: Dimethyla 26.5 39 0.00085 29.2 1.5 24 48-71 408-431 (466)
113 KOG0648 Predicted NUDIX hydrol 23.8 36 0.00077 28.9 0.8 32 41-73 56-87 (295)
114 TIGR01084 mutY A/G-specific ad 21.7 1.2E+02 0.0025 25.5 3.4 21 27-47 237-261 (275)
No 1
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.91 E-value=2.3e-24 Score=159.20 Aligned_cols=134 Identities=43% Similarity=0.684 Sum_probs=111.5
Q ss_pred CceeeeeEEEEEeeCCCcccccccCCccEEEEEEeCC-CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEE
Q 028684 2 QTNEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE 80 (205)
Q Consensus 2 ~~~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~-~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~ 80 (205)
.+|+++|||||+.++. ..+||||++.+ ...|.+|+|++|+||+..+||+||++||+|+...+...+.|.
T Consensus 7 G~r~vagCi~~r~~~~----------~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~ 76 (145)
T KOG2839|consen 7 GFRLVAGCICYRSDKE----------KIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGF 76 (145)
T ss_pred CcEEEEEeeeeeecCc----------ceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccch
Confidence 3689999999997642 46999999987 567999999999999999999999999999998877545566
Q ss_pred EEeeccCccccCCCCCCcEEEEEEEEEecccccCCCCcc--ceeeEEEehhHHhhhcCChHHHHHHHHHHHhcc
Q 028684 81 WEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQA--NYKRIWLSVEEAFKSCRYDWMIDALKKFLLGMN 152 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e--~~~~~Wv~~~el~~l~~~~~~~~~l~~~~~~l~ 152 (205)
..+.+..... .+..++|.+.+.+.+..+|+.+ ..+.+|+.++|+.+.+++.+|+.++..+++.+.
T Consensus 77 ~~~~~~~~~~-------~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~~~~m~~al~e~~~~l~ 143 (145)
T KOG2839|consen 77 EDFLSKKHRT-------KPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQHKWMKAALEEFLQFLC 143 (145)
T ss_pred hhccChhhcc-------cccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 6676655443 2467889888888787788776 567799999999999999999999999988764
No 2
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.91 E-value=2e-23 Score=154.26 Aligned_cols=121 Identities=43% Similarity=0.673 Sum_probs=93.4
Q ss_pred eeeeEEEEEeeCCCcccccccCCccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEee
Q 028684 5 EQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFR 84 (205)
Q Consensus 5 ~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~ 84 (205)
+++|+|+|+.++ +..+|||+++...+.|.||||+++.|||+++||+||++||||+++.....+++.+.+.
T Consensus 1 ~~~g~v~~~~~~----------~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~ 70 (122)
T cd04666 1 LQAGAIPYRETG----------GEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYR 70 (122)
T ss_pred CEEEEEEEEEcC----------CceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEee
Confidence 479999999642 3579999998877889999999999999999999999999999976551378888765
Q ss_pred ccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhcCChHH
Q 028684 85 SKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWM 140 (205)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~ 140 (205)
.+... ...+...++|.+.+......+++.+..+.+|++++++.+++.++++
T Consensus 71 ~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~~~~~ 121 (122)
T cd04666 71 KRSKN-----RPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVEEPEL 121 (122)
T ss_pred ecCCC-----CCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcCChhh
Confidence 54321 1223566788887765444445555567899999999999988754
No 3
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.91 E-value=4.3e-23 Score=152.98 Aligned_cols=130 Identities=26% Similarity=0.290 Sum_probs=98.8
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEe
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 83 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~ 83 (205)
+.++++|+++.++ ++++|||+++++.+.|.||||++++|||+++||.||++||||+++.... +++.+.+
T Consensus 1 ~~~a~~ii~~~~~----------~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~ 69 (131)
T cd03673 1 VLAAGGVVFRGSD----------GGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGD-PLGTIRY 69 (131)
T ss_pred CeeEEEEEEEccC----------CCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecc-eEEEEEE
Confidence 4688999998642 3579999999887899999999999999999999999999999987664 7777666
Q ss_pred eccCccccCCCCCCcEEEEEEEEEecccccCC-CCccceeeEEEehhHHhhhcCChHHHHHHHHHHH
Q 028684 84 RSKSRMNSCNSKEGGCRGYMFALEVTEELESW-PEQANYKRIWLSVEEAFKSCRYDWMIDALKKFLL 149 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~-~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~~~~~ 149 (205)
...... .......++|.+......... ...+..+.+|++++++.+++.++..+.+|+.+++
T Consensus 70 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 131 (131)
T cd03673 70 WFSSSG-----KRVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSYPNDRELLRAALR 131 (131)
T ss_pred eccCCC-----CCcceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcCCHhHHHHHHHhhC
Confidence 443221 112356667776654322211 3445567799999999999999999999887753
No 4
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.88 E-value=1.5e-21 Score=144.94 Aligned_cols=128 Identities=23% Similarity=0.216 Sum_probs=92.5
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEe
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 83 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~ 83 (205)
+.++|+|+|..++ ++.+|||+++++ +.|.+|||++++|||+.+||+||++||||+.+.... .++.+..
T Consensus 2 ~~~~g~vi~~~~~----------~~~~vLl~~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~ 69 (130)
T cd03428 2 ERSAGAIIYRRLN----------NEIEYLLLQASY-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLF-IVLGFKE 69 (130)
T ss_pred ceEEEEEEEEecC----------CCceEEEEEccC-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhh-hhcccee
Confidence 5689999999753 367899999887 889999999999999999999999999999976543 3332221
Q ss_pred eccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhcCChHHHHHHHHHH
Q 028684 84 RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKFL 148 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~~~~ 148 (205)
...... .......++|.+.+.........++..+.+|++++++.+++.++.++.+++.+.
T Consensus 70 ~~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~ 129 (130)
T cd03428 70 TLNYQV-----RGKLKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLTYEDLKAVLDKAH 129 (130)
T ss_pred EEEccc-----cCcceEEEEEEEEeCCCCccccccceeeEEeecHHHHHHHcCchhHHHHHHHhh
Confidence 111000 011245667777765322222335566789999999999998888888887654
No 5
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.88 E-value=1.1e-21 Score=149.34 Aligned_cols=135 Identities=20% Similarity=0.226 Sum_probs=91.6
Q ss_pred CceeeeeEEEEEeeCCCcccccccCCccEEEEEEeCC-CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCC-CCeE
Q 028684 2 QTNEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE-NPLG 79 (205)
Q Consensus 2 ~~~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~-~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~-~~lg 79 (205)
..+.+|++++++. +++|||+++.. .+.|.+|||++|+|||+++||+||++||||+++.... .+++
T Consensus 5 ~~~~~v~~vi~~~-------------~~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~ 71 (148)
T PRK09438 5 KRPVSVLVVIYTP-------------DLGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLID 71 (148)
T ss_pred cCceEEEEEEEeC-------------CCeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecc
Confidence 3567788888873 45799998865 4679999999999999999999999999999873221 1111
Q ss_pred -----EEEeeccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhcCChHHHHHHHHHHHhc
Q 028684 80 -----EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKFLLGM 151 (205)
Q Consensus 80 -----~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~~~~~~l 151 (205)
.+.+.........++ ..+...++|.+........ ..++..+.+|++++++.++...+.++.+++.+++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~ 146 (148)
T PRK09438 72 CQRSIEYEIFPHWRHRYAPG-VTRNTEHWFCLALPHERPV-VLTEHLAYQWLDAREAAALTKSWSNAEAIEQLVIRL 146 (148)
T ss_pred cccccccccchhhhhccccc-cCCceeEEEEEecCCCCcc-ccCcccceeeCCHHHHHHHhcChhHHHHHHHHHHHh
Confidence 111111000000001 1234567787765543222 233666789999999999999999999999888765
No 6
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.87 E-value=4.7e-21 Score=141.45 Aligned_cols=121 Identities=21% Similarity=0.206 Sum_probs=87.6
Q ss_pred eeeEEEEEeeCCCcccccccCCccEEEEEEeCCC---CCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEE
Q 028684 6 QYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNR---DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE 82 (205)
Q Consensus 6 ~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~---~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~ 82 (205)
.|++|+++ +++|||+++.+. +.|.+|||++|+|||+++||+||++||||+++.... +++.+.
T Consensus 2 ~~~~ii~~--------------~~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~-~~~~~~ 66 (128)
T cd04684 2 GAYAVIPR--------------DGKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGR-RLGSAS 66 (128)
T ss_pred eeEEEEEe--------------CCEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecce-eeeEEE
Confidence 46777776 368999998764 789999999999999999999999999999987653 677765
Q ss_pred eeccCccccCCCCCCcEEEEEEEEEeccccc--CCCCccceeeEEEehhHHhhhcCChHHHHHH
Q 028684 83 FRSKSRMNSCNSKEGGCRGYMFALEVTEELE--SWPEQANYKRIWLSVEEAFKSCRYDWMIDAL 144 (205)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~--~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l 144 (205)
+....... ....+...++|.+....... ..+.++..+.+|++++++..+...+....++
T Consensus 67 ~~~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~a~ 127 (128)
T cd04684 67 RYFYSPDG---DYDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLSPLVLWAV 127 (128)
T ss_pred EEEECCCC---CeeccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhccCCCHHHHHhh
Confidence 43222111 00123566778777654332 2234455678999999999888888766654
No 7
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.86 E-value=2.2e-20 Score=140.61 Aligned_cols=130 Identities=17% Similarity=0.098 Sum_probs=87.3
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeE----
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG---- 79 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg---- 79 (205)
+..+++++++. +.++|||++++..+.|.+|||++++|||+++||.||++||||+++.... +.+
T Consensus 2 ~~~~~~~v~~~------------~~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~-~~~~~~~ 68 (138)
T cd03674 2 HFTASAFVVNP------------DRGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLR-PLSVLVD 68 (138)
T ss_pred cEEEEEEEEeC------------CCCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccce-ecccccc
Confidence 46788888873 2369999999888899999999999999999999999999999865332 222
Q ss_pred --EEEeeccCccccCCCCCCcEEEEEEEEEecccccC-CCCccceeeEEEehhHHhhhcCChHHHHHHHHHHH
Q 028684 80 --EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELES-WPEQANYKRIWLSVEEAFKSCRYDWMIDALKKFLL 149 (205)
Q Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~-~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~~~~~ 149 (205)
.+......... .....+...+|.+.+...... ...++..+.+|++++++.++...+..+..+..+++
T Consensus 69 ~~~~~~~~~~~~~---~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~i~~~~~ 138 (138)
T cd03674 69 LDVHPIDGHPKRG---VPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASLELPEDVRRLVEKALR 138 (138)
T ss_pred ceeEeecCCCCCC---CCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhccCCHHHHHHHHHHhC
Confidence 11111111000 011223445566654432211 13445567799999999887777888888877653
No 8
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=2.6e-20 Score=138.94 Aligned_cols=125 Identities=18% Similarity=0.083 Sum_probs=87.3
Q ss_pred eeeEEEEEeeCCCcccccccCCccEEEEEEeCC--CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEE--
Q 028684 6 QYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEW-- 81 (205)
Q Consensus 6 ~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~--~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~-- 81 (205)
++|+|++.... ++++|||++|.. .+.|.+|||++++|||+.+||+||++||||+++.... ..+.+
T Consensus 1 ~~~~v~~~~~~----------~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~-~~~~~~~ 69 (131)
T cd04695 1 AVSGVLLRSLD----------KETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELY-NADYLEQ 69 (131)
T ss_pred CceEEEEEEcC----------CCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccc-cccceee
Confidence 36788887643 467999999987 6889999999999999999999999999999875331 11111
Q ss_pred EeeccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhcCChHHHHHHHHHHH
Q 028684 82 EFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKFLL 149 (205)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~~~~~ 149 (205)
.|..... ......+|.+.........+.++..+.+|++++++.++...+..+.++.....
T Consensus 70 ~~~~~~~--------~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~ 129 (131)
T cd04695 70 FYEANDN--------RILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPFPGQRALYDHVWR 129 (131)
T ss_pred EeecCCc--------eEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHhcCChhHHHHHHHHHh
Confidence 1221111 11344556555543222223456667799999999999998888887766543
No 9
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=2.3e-20 Score=136.52 Aligned_cols=106 Identities=22% Similarity=0.229 Sum_probs=77.5
Q ss_pred ccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccce-eCCCCeEEEEeeccCccccCCCCCCcEEEEEEEE
Q 028684 28 KVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGL-LDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFAL 106 (205)
Q Consensus 28 ~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~-~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~ 106 (205)
+++|||++++..+.|.+|||++++|||+++||+||++||||+.+. ... +++.+.+..... ....++|.+
T Consensus 11 ~~~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~-~~~~~~~~~~~~---------~~~~~~f~~ 80 (120)
T cd04680 11 DGRVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAE-LLGVYYHSASGS---------WDHVIVFRA 80 (120)
T ss_pred CCeEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccc-eEEEEecCCCCC---------ceEEEEEEe
Confidence 468999998877799999999999999999999999999999987 553 677766543221 135567766
Q ss_pred EecccccCCCCccceeeEEEehhHHhhhcCChHHHHHH
Q 028684 107 EVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDAL 144 (205)
Q Consensus 107 ~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l 144 (205)
.........+.++..+.+|++++++.+.+..+ .+..+
T Consensus 81 ~~~~~~~~~~~~E~~~~~w~~~~~l~~~~~~~-~~~~~ 117 (120)
T cd04680 81 RADTQPVIRPSHEISEARFFPPDALPEPTTPA-TRRRI 117 (120)
T ss_pred cccCCCccCCcccEEEEEEECHHHCcccCChH-HHHHh
Confidence 65543222244555677999999999865533 44443
No 10
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.84 E-value=1.1e-19 Score=135.72 Aligned_cols=115 Identities=24% Similarity=0.339 Sum_probs=82.9
Q ss_pred ccEEEEEEeCCC--CCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEEEEE
Q 028684 28 KVLVLMISTPNR--DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFA 105 (205)
Q Consensus 28 ~~~VLLi~~~~~--~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~ 105 (205)
++++||+++.+. +.|.+|||++++|||+.+||.||++||||+++.... +++.+.+...... .....++|.
T Consensus 10 ~~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~~~~~~~-------~~~~~~~f~ 81 (134)
T cd03675 10 DGRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTA-LLGIYQWTAPDSD-------TTYLRFAFA 81 (134)
T ss_pred CCEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccce-EEEEEEeecCCCC-------eeEEEEEEE
Confidence 458999998654 469999999999999999999999999999986553 6676665443211 123445676
Q ss_pred EEecccccC-CCCccceeeEEEehhHHhhhc---CChHHHHHHHHHHHh
Q 028684 106 LEVTEELES-WPEQANYKRIWLSVEEAFKSC---RYDWMIDALKKFLLG 150 (205)
Q Consensus 106 ~~v~~~~~~-~~~~e~~~~~Wv~~~el~~l~---~~~~~~~~l~~~~~~ 150 (205)
+.+...... ...++..+..|++++++.++. ..+.+.+.+..++..
T Consensus 82 ~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l~~ 130 (134)
T cd03675 82 AELLEHLPDQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYLAG 130 (134)
T ss_pred EEECCCCCCCCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHHhc
Confidence 666543221 223455667999999999886 567677788777654
No 11
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.84 E-value=2.9e-20 Score=140.77 Aligned_cols=117 Identities=19% Similarity=0.123 Sum_probs=83.5
Q ss_pred ceeeeeEEEEEeeCCCcccccccCCccEEEEEEeCC---CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeE
Q 028684 3 TNEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG 79 (205)
Q Consensus 3 ~~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~---~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg 79 (205)
+..+|++++++. +++|||++++. .+.|.||||++++|||+++||+||++||||+++.... +++
T Consensus 12 ~~~av~~vv~~~-------------~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~-~~~ 77 (142)
T cd04700 12 EARAAGAVILNE-------------RNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVK-FLG 77 (142)
T ss_pred eeeeEEEEEEeC-------------CCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccE-EEE
Confidence 346788888873 45799998764 3669999999999999999999999999999987653 677
Q ss_pred EEEeeccCccccCCCCCCcEEEEEEEEEecccc-cCCCCccceeeEEEehhHHhhhcCChHHH
Q 028684 80 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL-ESWPEQANYKRIWLSVEEAFKSCRYDWMI 141 (205)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~-~~~~~~e~~~~~Wv~~~el~~l~~~~~~~ 141 (205)
.+.+...... ....++|.+...... .....++..+.+|++++++.+++..+.+.
T Consensus 78 ~~~~~~~~~~--------~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~i~ 132 (142)
T cd04700 78 TYLGRFDDGV--------LVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQGQLR 132 (142)
T ss_pred EEEEEcCCCc--------EEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhcccccccc
Confidence 6654332211 134567777654321 21123455678999999999998665443
No 12
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.84 E-value=1.2e-19 Score=137.77 Aligned_cols=117 Identities=19% Similarity=0.197 Sum_probs=80.4
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeCC---CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCC-CCeE
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE-NPLG 79 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~---~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~-~~lg 79 (205)
+.+|++|+++. +++|||++|.+ .+.|.||||+++.|||+++||+||++||||+++.+.. .+++
T Consensus 12 ~v~v~~vI~~~-------------~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~ 78 (144)
T cd03430 12 LVSIDLIVENE-------------DGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLG 78 (144)
T ss_pred eEEEEEEEEeC-------------CCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEE
Confidence 45788888862 46999999864 4779999999999999999999999999999987551 2666
Q ss_pred EEEeeccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhh
Q 028684 80 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKS 134 (205)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l 134 (205)
.+.+....... .++...+....+|.+.........+.++..+.+|++++++.+.
T Consensus 79 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 79 VFEHFYDDNFF-GDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred EEEEEeccccc-cCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcC
Confidence 66432211100 0012234555667666544322224455567899999999875
No 13
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=5.1e-20 Score=136.78 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=83.3
Q ss_pred eeeEEEEEeeCCCcccccccCCccEEEEEEeCC---CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEE
Q 028684 6 QYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE 82 (205)
Q Consensus 6 ~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~---~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~ 82 (205)
+|++++++. +++|||+++.. .+.|.+|||+++.|||+.+||.||++||||+++.... .++.+.
T Consensus 3 av~~~i~~~-------------~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~-~~~~~~ 68 (130)
T cd04681 3 AVGVLILNE-------------DGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELS-YLFSLP 68 (130)
T ss_pred eEEEEEEcC-------------CCcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCccccee-EEEeec
Confidence 566777662 45899998854 3679999999999999999999999999999876443 555543
Q ss_pred eeccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHh-hhcCChHHHHHHHHH
Q 028684 83 FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAF-KSCRYDWMIDALKKF 147 (205)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~-~l~~~~~~~~~l~~~ 147 (205)
...... +...+...++|.+.+.........++....+|++++++. +.+.++..+.+++.|
T Consensus 69 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~~~ 129 (130)
T cd04681 69 NTYPYG-----GMEYDTLDLFFVCQVDDKPIVKAPDDVAELKWVVPQDIELENFAFPSIRQAVERW 129 (130)
T ss_pred ceeeeC-----CceeEEEEEEEEEEeCCCCCcCChHHhheeEEecHHHCCcccCCcHHHHHHHHhh
Confidence 211111 111223445677766543222233455667999999985 456667777877765
No 14
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=7.4e-20 Score=135.17 Aligned_cols=112 Identities=13% Similarity=0.039 Sum_probs=80.4
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeCC---CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEE
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE 80 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~---~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~ 80 (205)
|..|++++++. +++|||+++.+ .+.|.+|||++++|||+++||+||++||||+++.... +++.
T Consensus 2 ~~~~~~~i~~~-------------~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~-~~~~ 67 (125)
T cd04679 2 RVGCGAAILRD-------------DGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTR-LLCV 67 (125)
T ss_pred ceEEEEEEECC-------------CCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccce-EEEE
Confidence 67899999873 46899998854 3679999999999999999999999999999987654 6666
Q ss_pred EEeeccCccccCCCCCCcEEEEEEEEEeccccc-CCCCccceeeEEEehhHHhhhcC
Q 028684 81 WEFRSKSRMNSCNSKEGGCRGYMFALEVTEELE-SWPEQANYKRIWLSVEEAFKSCR 136 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~-~~~~~e~~~~~Wv~~~el~~l~~ 136 (205)
+.+..... ..+...++|.+....... ....++..+.+|++++++.+.+.
T Consensus 68 ~~~~~~~~-------~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~ 117 (125)
T cd04679 68 VDHIIEEP-------PQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLT 117 (125)
T ss_pred EeecccCC-------CCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchhH
Confidence 55432221 123456677666543222 11233456779999999987554
No 15
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1e-19 Score=133.25 Aligned_cols=115 Identities=19% Similarity=0.170 Sum_probs=80.3
Q ss_pred eeeEEEEEeeCCCcccccccCCccEEEEEEeCC---CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEE
Q 028684 6 QYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE 82 (205)
Q Consensus 6 ~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~---~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~ 82 (205)
+|++++++ +++|||+++.+ .+.|.||||++++|||+++||.||++||||+++.... +++.+.
T Consensus 2 ~v~~ii~~--------------~~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~-~~~~~~ 66 (122)
T cd04673 2 AVGAVVFR--------------GGRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGR-LLTVVD 66 (122)
T ss_pred cEEEEEEE--------------CCEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeece-eEEEEE
Confidence 46677776 35899998864 3669999999999999999999999999999987654 777765
Q ss_pred eeccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhcCChH
Q 028684 83 FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDW 139 (205)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~ 139 (205)
+....... +...+...++|.+....... .+.++..+.+|++++++.++...+.
T Consensus 67 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~~~~~ 119 (122)
T cd04673 67 VIERDAAG---RVEFHYVLIDFLCRYLGGEP-VAGDDALDARWVPLDELAALSLTES 119 (122)
T ss_pred EeeccCCC---ccceEEEEEEEEEEeCCCcc-cCCcccceeEEECHHHHhhCcCCcc
Confidence 54322110 11223455566665443222 2344556789999999998876553
No 16
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.8e-19 Score=133.73 Aligned_cols=119 Identities=22% Similarity=0.231 Sum_probs=83.1
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCC--CCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEE
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNR--DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEW 81 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~--~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~ 81 (205)
|..|++|+++ +++|||+++.+. +.|.+|||++++|||+++||+||++||||+++.... +++.+
T Consensus 1 r~~a~~iv~~--------------~~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~-~~~~~ 65 (128)
T cd04687 1 RNSAKAVIIK--------------NDKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGP-LLFVR 65 (128)
T ss_pred CcEEEEEEEE--------------CCEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCc-EEEEE
Confidence 5678888887 358999988543 459999999999999999999999999999987653 56665
Q ss_pred EeeccCccccCCCCCCcEEEEEEEEEeccccc----CCCCccceeeEEEehhHHhhhcCCh
Q 028684 82 EFRSKSRMNSCNSKEGGCRGYMFALEVTEELE----SWPEQANYKRIWLSVEEAFKSCRYD 138 (205)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~----~~~~~e~~~~~Wv~~~el~~l~~~~ 138 (205)
.+....... ..+...+.+.++|.+....... ..++.+..+.+|++++++.++..+|
T Consensus 66 ~~~~~~~~~-~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p 125 (128)
T cd04687 66 EYIGHNPTS-ELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYP 125 (128)
T ss_pred EEeccCccc-cCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcccccC
Confidence 554322100 0122345667788777654221 1123334577999999998876555
No 17
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.83 E-value=8.7e-20 Score=135.18 Aligned_cols=126 Identities=22% Similarity=0.200 Sum_probs=90.9
Q ss_pred ceeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCC-----CCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCC
Q 028684 3 TNEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENP 77 (205)
Q Consensus 3 ~~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~-----~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~ 77 (205)
+|.+|++++++. +++|||+++.+. +.|.+|||++++|||+.+||+||+.||||+.+.... .
T Consensus 1 ~~~~v~~ii~~~-------------~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~-~ 66 (134)
T PF00293_consen 1 WRRAVGVIIFNE-------------DGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLE-L 66 (134)
T ss_dssp EEEEEEEEEEET-------------TTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEE-E
T ss_pred CCCEEEEEEEeC-------------CcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccc-c
Confidence 478999999983 349999999876 569999999999999999999999999999985442 5
Q ss_pred eEEEEeeccCccccCCCCCCcEEEEEEEEEecccc--cCCCCccceeeEEEehhHHhhhcCChHHHHHHHHHH
Q 028684 78 LGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL--ESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKFL 148 (205)
Q Consensus 78 lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~--~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~~~~ 148 (205)
++.+.+....... .....++|.+...... ......+....+|++++++.++........+++.++
T Consensus 67 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~i~~~~ 133 (134)
T PF00293_consen 67 LGLFSYPSPSGDP------EGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGRIRKIIPWLY 133 (134)
T ss_dssp EEEEEEEETTTES------SEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTHHHHHHHHHH
T ss_pred ceeeeecccCCCc------ccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcchhhhhcccc
Confidence 5555554433321 1134555555544322 111223566779999999999998787777776654
No 18
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.83 E-value=2.1e-19 Score=138.48 Aligned_cols=118 Identities=20% Similarity=0.220 Sum_probs=79.1
Q ss_pred eeeeEEEEEeeCCCcccccccCCccEEEEEEeCC---CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeC-CCCeEE
Q 028684 5 EQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLD-ENPLGE 80 (205)
Q Consensus 5 ~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~---~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~-~~~lg~ 80 (205)
.+|++++.+ +.++|||++|.. .+.|.||||++++|||+++||+||++||||+++.+. ..+++.
T Consensus 18 ~~v~~vI~~-------------~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~ 84 (159)
T PRK15434 18 ISLDFIVEN-------------SRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGV 84 (159)
T ss_pred EEEEEEEEC-------------CCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEE
Confidence 567777765 256999999864 367999999999999999999999999999986432 135665
Q ss_pred EEeeccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhcC
Q 028684 81 WEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCR 136 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~ 136 (205)
+.+........ .....++..++|.+............+..+.+|++++++.++..
T Consensus 85 ~~~~~~~~~~~-~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~~~ 139 (159)
T PRK15434 85 WQHFYDDNFSG-TDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLASDN 139 (159)
T ss_pred EEeecccccCC-CccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhccc
Confidence 54322111000 01122456677877765432222233556789999999988643
No 19
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=2.1e-19 Score=132.81 Aligned_cols=120 Identities=21% Similarity=0.108 Sum_probs=80.7
Q ss_pred eeeeEEEEEeeCCCcccccccCCccEEEEEEeCC-CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEe
Q 028684 5 EQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN-RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 83 (205)
Q Consensus 5 ~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~-~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~ 83 (205)
.+|++++++. +++|||+++.. .+.|.+|||++++|||+++||+||++||||+++.... +++...+
T Consensus 3 ~~v~~~i~~~-------------~~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~~~~~ 68 (125)
T cd04696 3 VTVGALIYAP-------------DGRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIK-FAMVQEA 68 (125)
T ss_pred cEEEEEEECC-------------CCCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccc-eEEEEEE
Confidence 4677788762 45899998653 5789999999999999999999999999999886553 5554333
Q ss_pred eccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhcCChHHHHH
Q 028684 84 RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDA 143 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~ 143 (205)
...... ....++..+.|.+..... .....++..+.+|++++++.++...+.....
T Consensus 69 ~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~ 123 (125)
T cd04696 69 IFSEEF----HKPAHFVLFDFFARTDGT-EVTPNEEIVEWEWVTPEEALDYPLNSFTRLL 123 (125)
T ss_pred eccCCC----CCccEEEEEEEEEEecCC-cccCCcccceeEEECHHHHhcCCCCHHHHHH
Confidence 221110 011223445565554432 2223445567799999999988766655444
No 20
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=1.5e-19 Score=133.18 Aligned_cols=127 Identities=15% Similarity=0.095 Sum_probs=85.0
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEe
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 83 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~ 83 (205)
+..|++|+++ +++++||++|...+.|.||||++++||++++||.||++||||+++.... +++.+..
T Consensus 2 ~~~v~~ii~~-------------~~~~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~-~~~~~~~ 67 (129)
T cd04676 2 LPGVTAVVRD-------------DEGRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTG-LVGIYTG 67 (129)
T ss_pred cceEEEEEEC-------------CCCeEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeE-EEEEeec
Confidence 4567777775 2468999999888899999999999999999999999999999876543 4444322
Q ss_pred eccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhcCChHHHHHHH
Q 028684 84 RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALK 145 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~ 145 (205)
....... ..+..++...++|.+............+..+.+|++++++..+...+.++..++
T Consensus 68 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~ 128 (129)
T cd04676 68 PVHVVTY-PNGDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPLLMHPSMRLRID 128 (129)
T ss_pred ccceeec-CCCCcEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccccCCHhHHHHhc
Confidence 1110000 001112345556665544322212344555779999999999887776666653
No 21
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.83 E-value=1.2e-19 Score=135.90 Aligned_cols=113 Identities=19% Similarity=0.092 Sum_probs=84.2
Q ss_pred ccEEEEEEeCC---CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEEEE
Q 028684 28 KVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 104 (205)
Q Consensus 28 ~~~VLLi~~~~---~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~f 104 (205)
+++|||+++.. .+.|.+|||++++|||+.+||+||++||||+.+.... +++.+.+...... .....++|
T Consensus 11 ~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~-~~~~~~~~~~~~~-------~~~~~~~f 82 (137)
T cd03427 11 PDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLK-LVGIIKFPFPGEE-------ERYGVFVF 82 (137)
T ss_pred CCEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecce-EEEEEEEEcCCCC-------cEEEEEEE
Confidence 36899999876 5779999999999999999999999999999987664 7787766544311 12466667
Q ss_pred EEEecccccCCCCccceeeEEEehhHHhhhcCChHHHHHHHHHHH
Q 028684 105 ALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKFLL 149 (205)
Q Consensus 105 ~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~~~~~ 149 (205)
.+........ ...+....+|++++++..+...+..+..++.+++
T Consensus 83 ~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 126 (137)
T cd03427 83 LATEFEGEPL-KESEEGILDWFDIDDLPLLPMWPGDREWLPLMLE 126 (137)
T ss_pred EECCcccccC-CCCccccceEEcHhhcccccCCCCcHHHHHHHhC
Confidence 6654432221 2344456799999999988777777888877774
No 22
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.83 E-value=2.8e-19 Score=135.92 Aligned_cols=110 Identities=19% Similarity=0.167 Sum_probs=73.4
Q ss_pred eeeeEEEEEeeCCCcccccccCCccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEee
Q 028684 5 EQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFR 84 (205)
Q Consensus 5 ~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~ 84 (205)
.++|+|+++. ++++|||+++...+.|.||||++|+|||+.+||+||++||||+.+.... ....+ .
T Consensus 2 p~~gaii~~~------------~~~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~-~~~~~--~ 66 (145)
T cd03672 2 PVYGAIILNE------------DLDKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYI-DKDDY--I 66 (145)
T ss_pred CeeEEEEEeC------------CCCEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceecc-cccee--e
Confidence 4789999983 2358999998777799999999999999999999999999999876421 11222 1
Q ss_pred ccCccccCCCCCCcEEEEEEEEEeccccc--CCCCccceeeEEEehhHHhhhcC
Q 028684 85 SKSRMNSCNSKEGGCRGYMFALEVTEELE--SWPEQANYKRIWLSVEEAFKSCR 136 (205)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~f~~~v~~~~~--~~~~~e~~~~~Wv~~~el~~l~~ 136 (205)
..... .....+||......... ..+.++..+.+|++++++.++..
T Consensus 67 ~~~~~-------~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~ 113 (145)
T cd03672 67 ELIIR-------GQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKN 113 (145)
T ss_pred ecccC-------CcEEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhh
Confidence 11111 11222333333332111 11234566789999999998863
No 23
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.82 E-value=3.9e-19 Score=132.84 Aligned_cols=126 Identities=18% Similarity=0.156 Sum_probs=88.7
Q ss_pred CCceeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCC----CCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCC
Q 028684 1 MQTNEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDEN 76 (205)
Q Consensus 1 m~~~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~----~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~ 76 (205)
|....++++|+.+ +++|||++|.+. |.|.||||++++||++.+|++||++||||+++....
T Consensus 1 ~~~~~~~~~ii~~--------------~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~- 65 (135)
T PRK10546 1 MKMIDVVAAIIER--------------DGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGE- 65 (135)
T ss_pred CCeEEEEEEEEec--------------CCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccce-
Confidence 6666667776643 458999988543 679999999999999999999999999999977553
Q ss_pred CeEEEEeeccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhcCChHHHHHHHHHHHhcc
Q 028684 77 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKFLLGMN 152 (205)
Q Consensus 77 ~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~~~~~~l~ 152 (205)
+++.+.+...+.. ...++|.+....... ...+..+.+|++++++.++...+.++.+++.+++...
T Consensus 66 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~--~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~ 130 (135)
T PRK10546 66 YVASHQREVSGRR---------IHLHAWHVPDFHGEL--QAHEHQALVWCTPEEALRYPLAPADIPLLEAFMALRA 130 (135)
T ss_pred eEEEEEEecCCcE---------EEEEEEEEEEecCcc--cccccceeEEcCHHHcccCCCCcCcHHHHHHHHHhhc
Confidence 5666554432221 234455444322111 1223446799999999998777778888888877633
No 24
>PLN02325 nudix hydrolase
Probab=99.82 E-value=1.3e-19 Score=137.56 Aligned_cols=112 Identities=16% Similarity=0.118 Sum_probs=74.6
Q ss_pred ccEEEEEEeCC---CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEEEE
Q 028684 28 KVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMF 104 (205)
Q Consensus 28 ~~~VLLi~~~~---~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~f 104 (205)
+++|||+++.+ .+.|.+|||+++.|||+++||+||++||||+++.... +++.+.+..... +...++..++|
T Consensus 19 ~~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~-~l~~~~~~~~~~-----~~~~~~i~~~f 92 (144)
T PLN02325 19 GNSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIE-LLTVTNNVFLEE-----PKPSHYVTVFM 92 (144)
T ss_pred CCEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceE-EEEEecceeecC-----CCCcEEEEEEE
Confidence 35899998875 4679999999999999999999999999999987654 677654322111 11234566677
Q ss_pred EEEeccccc---CCCCccceeeEEEehhHHhhhcCChHHHHHHHH
Q 028684 105 ALEVTEELE---SWPEQANYKRIWLSVEEAFKSCRYDWMIDALKK 146 (205)
Q Consensus 105 ~~~v~~~~~---~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~~ 146 (205)
.+...+... ....++..+.+|++++++...+..+ .+.++..
T Consensus 93 ~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~~p-~~~~~~~ 136 (144)
T PLN02325 93 RAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLFWP-LEKLVGS 136 (144)
T ss_pred EEEECCCCCCCCcCCchhcCceEEEChHHCChhhhHH-HHHHHHc
Confidence 766543211 1111223557999999998865543 3344433
No 25
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.7e-19 Score=132.96 Aligned_cols=115 Identities=11% Similarity=0.064 Sum_probs=80.6
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEe
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 83 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~ 83 (205)
+..|++++++ +++|||++++..+.|.+|||++++|||+++||+||++||||+.+.... +++.+..
T Consensus 2 ~~~v~~~i~~--------------~~~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~-~~~~~~~ 66 (123)
T cd04672 2 KVDVRAAIFK--------------DGKILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRK-LAAVDDR 66 (123)
T ss_pred cceEEEEEEE--------------CCEEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeE-EEEEecc
Confidence 4567888887 358999999888899999999999999999999999999999876543 5555533
Q ss_pred eccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhcCCh
Q 028684 84 RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYD 138 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~ 138 (205)
...... +...+...++|.+....... .+.++..+.+|++++++.++....
T Consensus 67 ~~~~~~----~~~~~~~~~~f~~~~~~~~~-~~~~E~~~~~W~~~~el~~l~~~~ 116 (123)
T cd04672 67 NKHHPP----PQPYQVYKLFFLCEILGGEF-KPNIETSEVGFFALDDLPPLSEKR 116 (123)
T ss_pred ccccCC----CCceEEEEEEEEEEecCCcc-cCCCceeeeEEECHHHCcccccCC
Confidence 221110 01122345567766543222 234555677999999998876433
No 26
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.82 E-value=3.3e-19 Score=131.66 Aligned_cols=108 Identities=22% Similarity=0.186 Sum_probs=76.4
Q ss_pred eeeeEEEEEeeCCCcccccccCCccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEee
Q 028684 5 EQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFR 84 (205)
Q Consensus 5 ~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~ 84 (205)
..|++++++ +++|||++++..+.|.+|||++|+|||+.+||+||++||||+++.... +++.+.+.
T Consensus 2 ~~~~~vi~~--------------~~~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~-~l~~~~~~ 66 (125)
T cd04689 2 LRARAIVRA--------------GNKVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGR-FLGAIENQ 66 (125)
T ss_pred eEEEEEEEe--------------CCEEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccE-EEEEEeee
Confidence 467777775 458999999877889999999999999999999999999999987553 67766443
Q ss_pred ccCccccCCCCCCcEEEEEEEEEecccc---cCCCCccceeeEEEehhHHh
Q 028684 85 SKSRMNSCNSKEGGCRGYMFALEVTEEL---ESWPEQANYKRIWLSVEEAF 132 (205)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~f~~~v~~~~---~~~~~~e~~~~~Wv~~~el~ 132 (205)
.... +...+...++|.+...... .....++..+.+|++++++.
T Consensus 67 ~~~~-----~~~~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 67 WHEK-----GVRTHEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLS 112 (125)
T ss_pred eccC-----CceEEEEEEEEEEEcccccccCCccCccceEEEEEccHHHcc
Confidence 2211 1122345567776654321 11123344567999999964
No 27
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.82 E-value=2.6e-19 Score=135.09 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=81.1
Q ss_pred CCceeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCC-----CCEEecCccccCCCCHHHHHHHHHHHHhcccceeCC
Q 028684 1 MQTNEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE 75 (205)
Q Consensus 1 m~~~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~-----~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~ 75 (205)
|..|.++.+|+.+ +++|||++|... |.|.+|||++++|||+++||.||++||||+++....
T Consensus 1 ~~~r~~~~~ii~~--------------~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~ 66 (141)
T PRK15472 1 MRQRTIVCPLIQN--------------DGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTE 66 (141)
T ss_pred CcceeEEEEEEec--------------CCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeee
Confidence 7777777777776 458999987542 779999999999999999999999999999865332
Q ss_pred CCeEEEEeeccCcc-ccCCCCCC-cEEE-EEEEEEecccccCCCCccceeeEEEehhHHhhhcCChHHHHHHHHH
Q 028684 76 NPLGEWEFRSKSRM-NSCNSKEG-GCRG-YMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKF 147 (205)
Q Consensus 76 ~~lg~~~~~~~~~~-~~~~~~~~-~~~~-~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~~~ 147 (205)
+..+.+...... ....+... .+.. ++|.+..... ...+.+|..+.+|++++++.++...+..+..|.++
T Consensus 67 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~E~~~~~w~~~~el~~l~~~~~~~~~~~~~ 138 (141)
T PRK15472 67 --ITPWTFRDDIRTKTYADGRKEEIYMIYLIFDCVSANR-DVKINEEFQDYAWVKPEDLVHYDLNVATRKTLRLK 138 (141)
T ss_pred --eccccccccceeEEecCCCceeEEEEEEEEEeecCCC-cccCChhhheEEEccHHHhccccccHHHHHHHHHh
Confidence 111111100000 00001110 1111 2233333222 11234455678999999999988777777766543
No 28
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.82 E-value=1.8e-19 Score=133.81 Aligned_cols=124 Identities=20% Similarity=0.143 Sum_probs=85.6
Q ss_pred eeeeEEEEEeeCCCcccccccCCccEEEEEEeCC--CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEE
Q 028684 5 EQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE 82 (205)
Q Consensus 5 ~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~--~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~ 82 (205)
++|.+++++.. ++++|||+++.+ .+.|.+|||+++.|||+++||+||++||||+.+.... .++.+.
T Consensus 2 ~~~~v~~~~~~-----------~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~-~~~~~~ 69 (129)
T cd04664 2 RSVLVVPYRLT-----------GEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLT-LLDRGA 69 (129)
T ss_pred cEEEEEEEEeC-----------CCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheE-EEeecc
Confidence 46788888743 256899999877 5789999999999999999999999999999864332 334332
Q ss_pred e-eccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhcCChHHHHHH
Q 028684 83 F-RSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDAL 144 (205)
Q Consensus 83 ~-~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l 144 (205)
. ...... ....+...++|.+.+.........++..+.+|++++++.+++.++.++.++
T Consensus 70 ~~~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~ 128 (129)
T cd04664 70 SIAFVEFT----DNGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLLWESNRRAW 128 (129)
T ss_pred cccccccC----CCceEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHcChhhhhhh
Confidence 1 000000 011234667787776653212233455577999999999999888776654
No 29
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=2e-19 Score=133.71 Aligned_cols=104 Identities=20% Similarity=0.162 Sum_probs=70.4
Q ss_pred ccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEE----eeccCccccCCCCCCcEEEEE
Q 028684 28 KVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE----FRSKSRMNSCNSKEGGCRGYM 103 (205)
Q Consensus 28 ~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~----~~~~~~~~~~~~~~~~~~~~~ 103 (205)
+++|||+++...+.|.||||++++|||+++||+||++||||+++.... +++.+. +..... +.......++
T Consensus 18 ~~~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 91 (132)
T cd04677 18 QGEVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEELE-LLGVYSGKEFYVKPNG-----DDEQYIVTLY 91 (132)
T ss_pred CCCEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeE-EEEEecCCceeecCCC-----CcEEEEEEEE
Confidence 458999998877889999999999999999999999999999987553 555442 111111 1112233344
Q ss_pred EEEEecccccCCCCccceeeEEEehhHHhhhcCC
Q 028684 104 FALEVTEELESWPEQANYKRIWLSVEEAFKSCRY 137 (205)
Q Consensus 104 f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~ 137 (205)
|...........+.++..+.+|++++++.+++..
T Consensus 92 ~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 125 (132)
T cd04677 92 YVTKVFGGKLVPDGDETLELKFFSLDELPELINP 125 (132)
T ss_pred EEEeccCCcccCCCCceeeEEEEChhHCccchhH
Confidence 4444333222224455567799999999887653
No 30
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=6.4e-19 Score=130.31 Aligned_cols=104 Identities=23% Similarity=0.222 Sum_probs=74.8
Q ss_pred cEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEEEEEEEe
Q 028684 29 VLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEV 108 (205)
Q Consensus 29 ~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v 108 (205)
++|||+++.+.+.|.+|||++++||++.+||.||++||||+++.... +++.+....... +...+...++|.+..
T Consensus 12 ~~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~f~~~~ 85 (126)
T cd04688 12 GKLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITR-LLGVVENIFTYN-----GKPGHEIEFYYLVTL 85 (126)
T ss_pred CEEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecce-eeEEEEEeeccC-----CcccEEEEEEEEEEe
Confidence 38999988777789999999999999999999999999999987664 667654322111 112235677888876
Q ss_pred cccccCC-------CCccceeeEEEehhHHhhhcCCh
Q 028684 109 TEELESW-------PEQANYKRIWLSVEEAFKSCRYD 138 (205)
Q Consensus 109 ~~~~~~~-------~~~e~~~~~Wv~~~el~~l~~~~ 138 (205)
.+..... .+.+..+.+|++++++..+...|
T Consensus 86 ~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p 122 (126)
T cd04688 86 LDESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYP 122 (126)
T ss_pred CCCcccccccceeccCCCEEEEEEeeHHHcccCccCC
Confidence 6533211 23445667999999998765444
No 31
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.81 E-value=9.1e-19 Score=133.17 Aligned_cols=121 Identities=18% Similarity=0.207 Sum_probs=80.5
Q ss_pred CceeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCC-CCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEE
Q 028684 2 QTNEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE 80 (205)
Q Consensus 2 ~~~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~-~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~ 80 (205)
.+|.+|++|+++. +++|||+++... +.|.+|||++++||++.+||.||++||||+++.... +++.
T Consensus 1 ~~~~~v~~ii~~~-------------~~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~-~l~~ 66 (147)
T cd03671 1 PYRPNVGVVLFNE-------------DGKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVE-IIAE 66 (147)
T ss_pred CCCceEEEEEEeC-------------CCEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceE-EEEE
Confidence 3688999999973 468999998766 589999999999999999999999999999975432 4443
Q ss_pred E----EeeccCccc--cCCCCCCcEEEEEEEEEecc---cccCCC--CccceeeEEEehhHHhhhcC
Q 028684 81 W----EFRSKSRMN--SCNSKEGGCRGYMFALEVTE---ELESWP--EQANYKRIWLSVEEAFKSCR 136 (205)
Q Consensus 81 ~----~~~~~~~~~--~~~~~~~~~~~~~f~~~v~~---~~~~~~--~~e~~~~~Wv~~~el~~l~~ 136 (205)
. .|....... ...+.......++|.+.+.. .....+ .+|..+.+|++++++.+++.
T Consensus 67 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~ 133 (147)
T cd03671 67 IPDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIV 133 (147)
T ss_pred cCCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhch
Confidence 2 232221100 00000112345566655543 221212 34556779999999999874
No 32
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=2.7e-19 Score=130.65 Aligned_cols=102 Identities=23% Similarity=0.230 Sum_probs=73.2
Q ss_pred ccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhccccee--CCCCeEEEEeeccCccccCCCCCCcEEEEEEE
Q 028684 28 KVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLL--DENPLGEWEFRSKSRMNSCNSKEGGCRGYMFA 105 (205)
Q Consensus 28 ~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~--~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~ 105 (205)
++++||+++++.+.|.||||++++||++++||+||++||||+.+.. .. .++.+.+...... ......++|.
T Consensus 11 ~~~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~f~ 83 (118)
T cd04690 11 DGRVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLE-YLGTFRAPAANEP------GVDVRATVYV 83 (118)
T ss_pred CCeEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheE-EEEEEecccccCC------CcEEEEEEEE
Confidence 4589999998888899999999999999999999999999998764 32 5666544322111 1235667777
Q ss_pred EEecccccCCCCccceeeEEEehhHHhhhcCCh
Q 028684 106 LEVTEELESWPEQANYKRIWLSVEEAFKSCRYD 138 (205)
Q Consensus 106 ~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~ 138 (205)
+.... ...+.++..+.+|++++++......+
T Consensus 84 ~~~~~--~~~~~~e~~~~~W~~~~e~~~~~~~~ 114 (118)
T cd04690 84 AELTG--EPVPAAEIEEIRWVDYDDPADDRLAP 114 (118)
T ss_pred EcccC--CcCCCchhhccEEecHHHccccccCc
Confidence 77654 22234455567999999986654333
No 33
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.80 E-value=4.5e-19 Score=134.73 Aligned_cols=110 Identities=24% Similarity=0.238 Sum_probs=77.6
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCC---CCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEE
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNR---DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE 80 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~---~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~ 80 (205)
...|++++.+ +++|||++|.+. |.|.||||++|.|||+++||.||++||||+++.... ++++
T Consensus 10 ~~~v~~~i~~--------------~~~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~-~~~v 74 (145)
T COG1051 10 LVAVGALIVR--------------NGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLE-LLAV 74 (145)
T ss_pred ceeeeEEEEe--------------CCEEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCccccee-EEEE
Confidence 3557777776 339999999775 779999999999999999999999999999977664 7777
Q ss_pred EEeeccCccccCCCCCCcEEEEEE-EEEecccccCCCCccceeeEEEehhHHhhhc
Q 028684 81 WEFRSKSRMNSCNSKEGGCRGYMF-ALEVTEELESWPEQANYKRIWLSVEEAFKSC 135 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~f-~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~ 135 (205)
++....+.. .++..++| .....+.......++.....|++++++..+.
T Consensus 75 ~~~~~rd~r-------~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~~ 123 (145)
T COG1051 75 FDDPGRDPR-------GHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPELP 123 (145)
T ss_pred ecCCCCCCc-------eeEEEEEEEEEecCCCcccCChhhHhhcceecHhHccccc
Confidence 766544321 12333333 4333333332222244567999999998754
No 34
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=8.1e-19 Score=129.93 Aligned_cols=112 Identities=17% Similarity=0.194 Sum_probs=73.7
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeCC--CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEE
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEW 81 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~--~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~ 81 (205)
+..|++++++. +++|||++++. .+.|.+|||++++|||+++||+||++||||+.+.... .++..
T Consensus 2 ~~~~~~~v~~~-------------~~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~-~~~~~ 67 (127)
T cd04670 2 TVGVGGLVLNE-------------KNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVS-VVGFR 67 (127)
T ss_pred eeEEEEEEEcC-------------CCeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeE-EEEEE
Confidence 34677777762 46899999877 6889999999999999999999999999999876543 44433
Q ss_pred EeeccCccccCCCCCCcEEEEEEEEEecc-ccc-CCCCccceeeEEEehhHHhhhcCCh
Q 028684 82 EFRSKSRMNSCNSKEGGCRGYMFALEVTE-ELE-SWPEQANYKRIWLSVEEAFKSCRYD 138 (205)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~f~~~v~~-~~~-~~~~~e~~~~~Wv~~~el~~l~~~~ 138 (205)
.+...... ....+|.+.+.. ... ....++..+.+|++++++.+.....
T Consensus 68 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 117 (127)
T cd04670 68 HAHPGAFG---------KSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITS 117 (127)
T ss_pred ecCCCCcC---------ceeEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcchhHH
Confidence 32211111 122334444332 111 1123344567999999997664433
No 35
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=1e-18 Score=130.44 Aligned_cols=112 Identities=28% Similarity=0.368 Sum_probs=75.9
Q ss_pred eeeEEEEEeeCCCcccccccCCccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccc-eeCCCCeEEEEee
Q 028684 6 QYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRG-LLDENPLGEWEFR 84 (205)
Q Consensus 6 ~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~-~~~~~~lg~~~~~ 84 (205)
+|++|+++ +++|||+++++.+.|.||||++++||++.+||+||++||||+.+ ... ..++.+...
T Consensus 2 ~~~~ii~~--------------~~~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~-~~l~~~~~~ 66 (131)
T cd04686 2 AVRAIILQ--------------GDKILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVI-EKFGTYTER 66 (131)
T ss_pred cEEEEEEE--------------CCEEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccc-eEEEEEEee
Confidence 57888887 45899999987788999999999999999999999999999986 333 356666422
Q ss_pred ccCccccCCCCCCcEEEEEEEEEeccccc-CCCCc-cc---eeeEEEehhHHhhh
Q 028684 85 SKSRMNSCNSKEGGCRGYMFALEVTEELE-SWPEQ-AN---YKRIWLSVEEAFKS 134 (205)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~f~~~v~~~~~-~~~~~-e~---~~~~Wv~~~el~~l 134 (205)
...... .+...+...++|.+.+..... ...+. +. ...+|++++++.+.
T Consensus 67 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 67 RPWRKP--DADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred ccccCC--CCceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence 111110 011223456778777654221 11111 11 34699999999764
No 36
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=6e-19 Score=128.00 Aligned_cols=100 Identities=24% Similarity=0.194 Sum_probs=72.0
Q ss_pred ccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEEEEEEE
Q 028684 28 KVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALE 107 (205)
Q Consensus 28 ~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 107 (205)
+++|||+++.. +.|.+|||++++||++.+||.||++||||+.+.... +++.+. .. ....++|.+.
T Consensus 10 ~~~vLlv~r~~-~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~-~~~~~~--~~-----------~~~~~~f~~~ 74 (112)
T cd04667 10 GGRVLLVRKSG-SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLL-YLFHVD--GG-----------STRHHVFVAS 74 (112)
T ss_pred CCEEEEEEcCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceE-EEEEEe--CC-----------CEEEEEEEEE
Confidence 45899998765 889999999999999999999999999999865332 444432 11 1244567666
Q ss_pred ecccccCCCCccceeeEEEehhHHhhhcCChHHHH
Q 028684 108 VTEELESWPEQANYKRIWLSVEEAFKSCRYDWMID 142 (205)
Q Consensus 108 v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~ 142 (205)
+.......+.++....+|++++++.++..++..+.
T Consensus 75 ~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~ 109 (112)
T cd04667 75 VPPSAQPKPSNEIADCRWLSLDALGDLNASAATRL 109 (112)
T ss_pred cCCcCCCCCchheeEEEEecHHHhhhcccchhhhh
Confidence 55432323445556789999999999877664443
No 37
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=9.4e-19 Score=128.89 Aligned_cols=106 Identities=25% Similarity=0.293 Sum_probs=74.1
Q ss_pred eeeEEEEEeeCCCcccccccCCccEEEEEEeCCC--CCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEe
Q 028684 6 QYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNR--DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 83 (205)
Q Consensus 6 ~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~--~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~ 83 (205)
.|++|+++ ++++|||+++.+. +.|.||||+++.|||+++||+||++||||+++.+.. +++.+.+
T Consensus 2 ~~~~ii~~-------------~~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~-~~~~~~~ 67 (121)
T cd04669 2 RASIVIIN-------------DQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEE-IFLIVNQ 67 (121)
T ss_pred ceEEEEEe-------------CCCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeee-EEEEEee
Confidence 46777776 2468999998653 569999999999999999999999999999987653 5666554
Q ss_pred eccCccccCCCCCCcEEEEEEEEEecc-cccC-C-------CCccceeeEEEehhHHhhhcCCh
Q 028684 84 RSKSRMNSCNSKEGGCRGYMFALEVTE-ELES-W-------PEQANYKRIWLSVEEAFKSCRYD 138 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~f~~~v~~-~~~~-~-------~~~e~~~~~Wv~~~el~~l~~~~ 138 (205)
. . ...++|.+.... .... . .+.+....+|++++++..+...|
T Consensus 68 ~--~-----------~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p 118 (121)
T cd04669 68 N--G-----------RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP 118 (121)
T ss_pred C--C-----------cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence 1 1 134566655432 1110 0 02223467999999999876444
No 38
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=1.4e-18 Score=128.94 Aligned_cols=110 Identities=19% Similarity=0.070 Sum_probs=78.0
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeC---CCCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEE
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTP---NRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE 80 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~---~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~ 80 (205)
+.+|++++++. +++|||+++. ..+.|.+|||++++|||+++||.||++||||+++.... .++.
T Consensus 2 ~~~v~~ii~~~-------------~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~-~~~~ 67 (129)
T cd04678 2 RVGVGVFVLNP-------------KGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQ-FLTV 67 (129)
T ss_pred ceEEEEEEECC-------------CCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceE-EEEE
Confidence 67888888873 4689999887 35789999999999999999999999999999976543 5565
Q ss_pred EEeeccCccccCCCCCCcEEEEEEEEEecccccCCC---CccceeeEEEehhHHhhh
Q 028684 81 WEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWP---EQANYKRIWLSVEEAFKS 134 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~---~~e~~~~~Wv~~~el~~l 134 (205)
+....... ..++...+|.+.......... .++..+.+|++++++.++
T Consensus 68 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 68 TNDVFEEE-------GKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred EeEEeCCC-------CcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 53322111 123566677776654222111 223346699999999886
No 39
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.79 E-value=8.9e-19 Score=130.48 Aligned_cols=102 Identities=21% Similarity=0.191 Sum_probs=74.7
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeC---CCCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEE
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTP---NRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGE 80 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~---~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~ 80 (205)
+.+|++|+++ +++|||+++. ..+.|.+|||++++||++++||+||++||||+++.... +++.
T Consensus 13 ~~~v~~ii~~--------------~~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~-~~~~ 77 (130)
T cd04511 13 KIIVGCVPEW--------------EGKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDG-LYAV 77 (130)
T ss_pred cEEEEEEEec--------------CCEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeee-EEEE
Confidence 4566777775 3589999985 34679999999999999999999999999999986543 5665
Q ss_pred EEeeccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHh
Q 028684 81 WEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAF 132 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~ 132 (205)
+..... ....++|.+.+.... .....+..+.+|++++++.
T Consensus 78 ~~~~~~-----------~~~~~~f~~~~~~~~-~~~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 78 YSVPHI-----------SQVYMFYRARLLDLD-FAPGPESLEVRLFTEEEIP 117 (130)
T ss_pred EecCCc-----------eEEEEEEEEEEcCCc-ccCCcchhceEEECHHHCC
Confidence 543211 135667777765432 2234455677999999996
No 40
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.8e-18 Score=126.63 Aligned_cols=94 Identities=21% Similarity=0.170 Sum_probs=66.8
Q ss_pred cEEEEEEeCC-----CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEEE
Q 028684 29 VLVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYM 103 (205)
Q Consensus 29 ~~VLLi~~~~-----~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 103 (205)
++|||++|.. .+.|.||||++++|||+++||+||++||||+++.... .++.+.+... . ....++
T Consensus 11 ~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~-~l~~~~~~~~-~---------~~~~~~ 79 (117)
T cd04691 11 DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYT-YLCSLYHPTS-E---------LQLLHY 79 (117)
T ss_pred CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccce-EEEEEeccCC-C---------eEEEEE
Confidence 5899999853 3679999999999999999999999999999864332 4555443221 1 135566
Q ss_pred EEEEecccccCCCCccceeeEEEehhHHhhhc
Q 028684 104 FALEVTEELESWPEQANYKRIWLSVEEAFKSC 135 (205)
Q Consensus 104 f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~ 135 (205)
|.+....... ..++..+.+|+++++++.+.
T Consensus 80 ~~~~~~~~~~--~~~E~~~~~W~~~~~l~~~~ 109 (117)
T cd04691 80 YVVTFWQGEI--PAQEAAEVHWMTANDIVLAS 109 (117)
T ss_pred EEEEEecCCC--CcccccccEEcCHHHcchhh
Confidence 7665433222 23555677999999998764
No 41
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=2.1e-18 Score=126.27 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=68.2
Q ss_pred ccEEEEEEeCC----CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCC-CCeEEEEeeccCccccCCCCCCcEEEE
Q 028684 28 KVLVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE-NPLGEWEFRSKSRMNSCNSKEGGCRGY 102 (205)
Q Consensus 28 ~~~VLLi~~~~----~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~-~~lg~~~~~~~~~~~~~~~~~~~~~~~ 102 (205)
+++|||+++.+ .+.|.+|||++++|||+++||+||++||||+.+.... .+++.+.+..... .+...+
T Consensus 10 ~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~--------~~~~~~ 81 (120)
T cd04683 10 DDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDI--------ESRIGL 81 (120)
T ss_pred CCEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCC--------ceEEEE
Confidence 35899998864 3579999999999999999999999999999876321 2455554433211 124556
Q ss_pred EEEEEeccc-ccCCCCccceeeEEEehhHHhhhc
Q 028684 103 MFALEVTEE-LESWPEQANYKRIWLSVEEAFKSC 135 (205)
Q Consensus 103 ~f~~~v~~~-~~~~~~~e~~~~~Wv~~~el~~l~ 135 (205)
+|.+..... ......++..+.+|++++++...+
T Consensus 82 ~f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 115 (120)
T cd04683 82 FFTVRRWSGEPRNCEPDKCAELRWFPLDALPDDT 115 (120)
T ss_pred EEEEEeecCccccCCCCcEeeEEEEchHHCcchh
Confidence 676654322 221123445567999999997654
No 42
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.2e-18 Score=128.84 Aligned_cols=105 Identities=23% Similarity=0.247 Sum_probs=73.7
Q ss_pred eeeEEEEEeeCCCcccccccCCccEEEEEEeCC---CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEE
Q 028684 6 QYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWE 82 (205)
Q Consensus 6 ~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~---~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~ 82 (205)
+|++++++. +++|||+++.. .+.|.+|||+++.|||+++||+||++||||+++.... +++...
T Consensus 2 ~~~~vv~~~-------------~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~-~~~~~~ 67 (123)
T cd04671 2 IVAAVILNN-------------QGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTT-LLSVEE 67 (123)
T ss_pred EEEEEEEcC-------------CCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecce-EEEEEc
Confidence 577888762 46899998754 3679999999999999999999999999999987654 555432
Q ss_pred eeccCccccCCCCCCcEEEEEEEEEeccc-ccC--CCCccceeeEEEehhHHhhhcC
Q 028684 83 FRSKSRMNSCNSKEGGCRGYMFALEVTEE-LES--WPEQANYKRIWLSVEEAFKSCR 136 (205)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~f~~~v~~~-~~~--~~~~e~~~~~Wv~~~el~~l~~ 136 (205)
. . . +...++|.+...+. ... .+..+..+++|++++++...+.
T Consensus 68 ~-~---~--------~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~~~~ 112 (123)
T cd04671 68 Q-G---G--------SWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLPLPLR 112 (123)
T ss_pred c-C---C--------eEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCCCccc
Confidence 1 1 1 13556776665432 211 1233445789999999954333
No 43
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=2.7e-18 Score=126.36 Aligned_cols=98 Identities=20% Similarity=0.112 Sum_probs=67.7
Q ss_pred ccEEEEEEeCCC------CCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEE
Q 028684 28 KVLVLMISTPNR------DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRG 101 (205)
Q Consensus 28 ~~~VLLi~~~~~------~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 101 (205)
+++|||++|... |.|.||||+++.||++++||.||++||||+++.... ......+..... ....
T Consensus 11 ~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~-~~~~~~~~~~~~---------~~~~ 80 (122)
T cd04682 11 DGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESR-IPWFRVYPSASP---------PGTE 80 (122)
T ss_pred CCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccc-cceeEecccCCC---------CceE
Confidence 369999988643 679999999999999999999999999999975332 222222222111 1356
Q ss_pred EEEEEEecccc-cCCCCccceeeEEEehhHHhhhc
Q 028684 102 YMFALEVTEEL-ESWPEQANYKRIWLSVEEAFKSC 135 (205)
Q Consensus 102 ~~f~~~v~~~~-~~~~~~e~~~~~Wv~~~el~~l~ 135 (205)
++|.+...... .....++..+.+|++++++.+..
T Consensus 81 ~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 115 (122)
T cd04682 81 HVFVVPLTAREDAILFGDEGQALRLMTVEEFLAHE 115 (122)
T ss_pred EEEEEEEecCCCccccCchhheeecccHHHHhhcc
Confidence 67766654432 22234555578999999997754
No 44
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.78 E-value=2.5e-18 Score=128.44 Aligned_cols=95 Identities=20% Similarity=0.151 Sum_probs=67.7
Q ss_pred ccEEEEEEeCC--CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEEEEE
Q 028684 28 KVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFA 105 (205)
Q Consensus 28 ~~~VLLi~~~~--~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~ 105 (205)
+++|||+++.. .+.|.+|||+++.|||+++||+||++||||+++.... +++.+.+... ....++|.
T Consensus 11 ~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~-~l~~~~~~~~-----------~~~~~~f~ 78 (131)
T cd03429 11 GDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIR-YVGSQPWPFP-----------SSLMLGFT 78 (131)
T ss_pred CCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeE-EEeecCCCCC-----------ceEEEEEE
Confidence 46999998875 5789999999999999999999999999999976443 5554433221 12445666
Q ss_pred EEecccccCCCCccceeeEEEehhHHhhh
Q 028684 106 LEVTEELESWPEQANYKRIWLSVEEAFKS 134 (205)
Q Consensus 106 ~~v~~~~~~~~~~e~~~~~Wv~~~el~~l 134 (205)
+...........++..+.+|++++++.++
T Consensus 79 ~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 79 AEADSGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EEEcCCcccCCchhhhccEeecHHHHhhc
Confidence 66554222112334456799999999884
No 45
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.78 E-value=8.2e-18 Score=126.01 Aligned_cols=112 Identities=21% Similarity=0.150 Sum_probs=77.9
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeCC----CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeE
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLG 79 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~----~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg 79 (205)
+.+|++++++. ++++||++++. .+.|.+|||+++.||++++||+||++||||+.+.... .++
T Consensus 2 ~~~v~v~~~~~-------------~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~-~~~ 67 (137)
T cd03424 2 PDAVAVLPYDD-------------DGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLE-KLG 67 (137)
T ss_pred CCEEEEEEEcC-------------CCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceE-EEe
Confidence 46788888873 46899998653 2469999999999999999999999999999985332 455
Q ss_pred EEEeeccCccccCCCCCCcEEEEEEEEEecccc--cCCCCccceeeEEEehhHHhhhcCCh
Q 028684 80 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL--ESWPEQANYKRIWLSVEEAFKSCRYD 138 (205)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~--~~~~~~e~~~~~Wv~~~el~~l~~~~ 138 (205)
.+.+..... ...+++|.+...... ......+..+.+|++++++.+++...
T Consensus 68 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 119 (137)
T cd03424 68 SFYPSPGFS---------DERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADG 119 (137)
T ss_pred eEecCCccc---------CccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcC
Confidence 543321111 124556666555432 12234455677999999999987543
No 46
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.77 E-value=1.3e-17 Score=122.94 Aligned_cols=123 Identities=17% Similarity=0.101 Sum_probs=83.1
Q ss_pred CCceeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCC----CCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCC
Q 028684 1 MQTNEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDEN 76 (205)
Q Consensus 1 m~~~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~----~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~ 76 (205)
|..+..+.+|+++ ++++|||.+|... |.|.||||++++||++.+||.||++||||+++....
T Consensus 1 ~~~~~~~~~ii~~-------------~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~- 66 (129)
T PRK10776 1 MKKLQIAVGIIRN-------------PNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHAT- 66 (129)
T ss_pred CceeEEEEEEEEC-------------CCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecce-
Confidence 6656666666654 2458999988653 679999999999999999999999999999865443
Q ss_pred CeEEEEeeccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhcCChHHHHHHHHHH
Q 028684 77 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKFL 148 (205)
Q Consensus 77 ~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~~~~ 148 (205)
.++.+.+..++. ....++|.+....... ...+..+.+|++++++......+.++.+++.++
T Consensus 67 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~--~~~e~~~~~W~~~~~l~~~~~p~~~~~~~~~~~ 127 (129)
T PRK10776 67 LFEKLEYEFPDR---------HITLWFWLVESWEGEP--WGKEGQPGRWVSQVALNADEFPPANEPIIAKLK 127 (129)
T ss_pred EEEEEEeeCCCc---------EEEEEEEEEEEECCcc--CCccCCccEEecHHHCccCCCCcccHHHHHHHH
Confidence 566655443322 1234455554322111 122344669999999988765565666666553
No 47
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.77 E-value=8.4e-18 Score=125.74 Aligned_cols=108 Identities=21% Similarity=0.295 Sum_probs=73.9
Q ss_pred CCccEEEEEEeCC--CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeC---CCCeEEEEeeccCccccCCCCCCcEE
Q 028684 26 EKKVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLD---ENPLGEWEFRSKSRMNSCNSKEGGCR 100 (205)
Q Consensus 26 ~~~~~VLLi~~~~--~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~---~~~lg~~~~~~~~~~~~~~~~~~~~~ 100 (205)
-++.++||+++.. .+.|.||||++|+|||+.+||.||++||||+.+.+. ..+++.+.+..+.... .+......
T Consensus 10 ~~~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~ 87 (132)
T cd04661 10 LDDTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVR--NEGIVGAK 87 (132)
T ss_pred ccCcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccc--cccCcccE
Confidence 3567899999864 367999999999999999999999999999976542 1123444443221110 01122346
Q ss_pred EEEEEEEecccccCCCCccceeeEEEehhHHhhhcC
Q 028684 101 GYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCR 136 (205)
Q Consensus 101 ~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~ 136 (205)
.++|.+...+... ....+..+.+|++++++.+++.
T Consensus 88 ~~~f~~~~~~g~~-~~~~e~~~~~W~~~~el~~~l~ 122 (132)
T cd04661 88 VFFFKARYMSGQF-ELSQNQVDFKWLAKEELQKYLN 122 (132)
T ss_pred EEEEEEEEecCcc-ccCCCcceeEecCHHHHHhhcC
Confidence 7788877654322 2345566789999999999875
No 48
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.76 E-value=2.1e-17 Score=127.04 Aligned_cols=118 Identities=22% Similarity=0.202 Sum_probs=77.9
Q ss_pred ceeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCC-CCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEE
Q 028684 3 TNEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEW 81 (205)
Q Consensus 3 ~~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~-~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~ 81 (205)
++.+|++++++. +++|||+++... +.|.+|||++++||++++||.||++||||+.+.... +++.+
T Consensus 7 ~~~~v~~~i~~~-------------~g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~-~~~~~ 72 (156)
T PRK00714 7 YRPNVGIILLNR-------------QGQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVE-ILAET 72 (156)
T ss_pred CCCeEEEEEEec-------------CCEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceE-EEEEc
Confidence 677889999873 458999998654 779999999999999999999999999999875332 44432
Q ss_pred ----EeeccCcc--ccCCCCCCcEEEEEEEEEecc-cc--cC--CCCccceeeEEEehhHHhhhc
Q 028684 82 ----EFRSKSRM--NSCNSKEGGCRGYMFALEVTE-EL--ES--WPEQANYKRIWLSVEEAFKSC 135 (205)
Q Consensus 82 ----~~~~~~~~--~~~~~~~~~~~~~~f~~~v~~-~~--~~--~~~~e~~~~~Wv~~~el~~l~ 135 (205)
.|..+... ....+.. ....++|.+.... .. .. .+++|..+.+|++++++.+++
T Consensus 73 ~~~~~y~~~~~~~~~~~~~~~-~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~ 136 (156)
T PRK00714 73 RDWLRYDLPKRLVRRSKGVYR-GQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQV 136 (156)
T ss_pred CCeEEecCcHHHhhccCCccc-CcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhc
Confidence 22211110 0000111 1245677766532 11 11 122355677999999999876
No 49
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.75 E-value=1.8e-17 Score=136.92 Aligned_cols=111 Identities=14% Similarity=0.073 Sum_probs=78.7
Q ss_pred ccEEEEEEeCC--CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEEEEE
Q 028684 28 KVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFA 105 (205)
Q Consensus 28 ~~~VLLi~~~~--~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~ 105 (205)
+++|||+++.. .+.|.+|||++|+|||+++||+||++||||+++.... +++.+.+..+. ..++.|.
T Consensus 142 ~~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~-~~~s~~~~~p~-----------~lm~~f~ 209 (256)
T PRK00241 142 GDEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLR-YVGSQPWPFPH-----------SLMLGFH 209 (256)
T ss_pred CCEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeE-EEEeEeecCCC-----------eEEEEEE
Confidence 46899998754 4679999999999999999999999999999976553 66665443221 3456676
Q ss_pred EEecccccCCCCccceeeEEEehhHHhhhcCChHH-HHHHHHHHHh
Q 028684 106 LEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWM-IDALKKFLLG 150 (205)
Q Consensus 106 ~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~-~~~l~~~~~~ 150 (205)
+...........+|..+.+|++++++..+.....+ +.+++.+++.
T Consensus 210 a~~~~~~~~~~~~Ei~~a~W~~~del~~lp~~~sia~~li~~~~~~ 255 (256)
T PRK00241 210 ADYDSGEIVFDPKEIADAQWFRYDELPLLPPSGTIARRLIEDTVAL 255 (256)
T ss_pred EEecCCcccCCcccEEEEEEECHHHCcccCCchHHHHHHHHHHHHh
Confidence 66543222222334456799999999988765554 5566666553
No 50
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.75 E-value=2.4e-17 Score=127.82 Aligned_cols=114 Identities=17% Similarity=0.111 Sum_probs=78.4
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeCC-----CCCEEec-CccccCCCCHHHHHHHHHHHHhcccceeCCCC
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFP-KGGWEDDETVSEAACREALEEAGVRGLLDENP 77 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~-----~~~W~lP-GG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~ 77 (205)
+.+|++++++. +++|||++|.. .|.|.+| ||++++|||+++||+||++||||+.+.... +
T Consensus 30 ~~~v~v~i~~~-------------~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~-~ 95 (165)
T cd02885 30 HRAFSVFLFNS-------------KGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLE-L 95 (165)
T ss_pred eeEEEEEEEcC-------------CCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchh-h
Confidence 67788888872 45899988754 2668886 899999999999999999999999986554 4
Q ss_pred e-EEEEeeccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhcC
Q 028684 78 L-GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCR 136 (205)
Q Consensus 78 l-g~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~ 136 (205)
+ +.+.|...... +...+...++|.+........ ..++..+.+|++++++.+++.
T Consensus 96 ~~~~~~~~~~~~~----~~~~~~i~~~f~~~~~~~~~~-~~~Ev~~~~w~~~~el~~~~~ 150 (165)
T cd02885 96 VLPRFRYRAPDDG----GLVEHEIDHVFFARADVTLIP-NPDEVSEYRWVSLEDLKELVA 150 (165)
T ss_pred ccceEEEEEEcCC----CceeeEEEEEEEEEeCCCCCC-CccceeEEEEECHHHHHHHHH
Confidence 3 55555432211 111123556776665443322 334445779999999999874
No 51
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.9e-17 Score=122.67 Aligned_cols=109 Identities=18% Similarity=0.197 Sum_probs=76.4
Q ss_pred eeeEEEEEeeCCCcccccccCCccEEEEEEeCC-----CCCEEe-cCccccCCCCHHHHHHHHHHHHhcccceeCCCCeE
Q 028684 6 QYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVF-PKGGWEDDETVSEAACREALEEAGVRGLLDENPLG 79 (205)
Q Consensus 6 ~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~-----~~~W~l-PGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg 79 (205)
++.+++++. +++|||++|.. .|.|.+ |||++++||++++||+||++||||+.+... ..++
T Consensus 2 ~~~v~i~~~-------------~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l-~~~~ 67 (126)
T cd04697 2 ATYIFVFNS-------------EGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQL-TPLG 67 (126)
T ss_pred eEEEEEEcC-------------CCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCcccc-EEee
Confidence 567777763 46899887753 356998 699999999999999999999999987633 2567
Q ss_pred EEEeeccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhcCCh
Q 028684 80 EWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYD 138 (205)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~ 138 (205)
.+.+..... ....++|.+....... ...++..+.+|++++++.+++...
T Consensus 68 ~~~~~~~~~---------~~~~~~f~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~~~~ 116 (126)
T cd04697 68 LFYYDTDGN---------RVWGKVFSCVYDGPLK-LQEEEVEEITWLSINEILQFKEGE 116 (126)
T ss_pred EEEecCCCc---------eEEEEEEEEEECCCCC-CCHhHhhheEEcCHHHHHHHhhcC
Confidence 666543221 1344566665543322 223455678999999999987544
No 52
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=7.1e-17 Score=119.20 Aligned_cols=121 Identities=15% Similarity=0.000 Sum_probs=81.9
Q ss_pred CCceeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCC----CCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCC
Q 028684 1 MQTNEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDEN 76 (205)
Q Consensus 1 m~~~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~----~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~ 76 (205)
|..+..+++|+++ ++++|||.+|... |.|.||||+++.||++++|+.||+.||||+++....
T Consensus 1 ~~~~~~~~~ii~~-------------~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~- 66 (128)
T TIGR00586 1 KKLQQIAVGIIRN-------------ENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSE- 66 (128)
T ss_pred CCeEEEEEEEEEC-------------CCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeee-
Confidence 6666666666654 2458998888543 579999999999999999999999999999876543
Q ss_pred CeEEEEeeccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhcCChHHHHHHHH
Q 028684 77 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKK 146 (205)
Q Consensus 77 ~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~~ 146 (205)
.++.+.+..++. ....++|.+...+... ...+....+|++++++.++.....+..+++.
T Consensus 67 ~~~~~~h~~~~~---------~~~~~~~~~~~~~~~~--~~~~~~~~~W~~~~~l~~~~~p~~~~~~~~~ 125 (128)
T TIGR00586 67 FEKLEYEFYPRH---------ITLWFWLLERWEGGPP--GKEGQPEEWWVLVGLLADDFFPAANPVIIKL 125 (128)
T ss_pred EEEEEEEECCCc---------EEEEEEEEEEEcCCCc--CcccccccEEeCHHHCCccCCCCCCHHHHHH
Confidence 456554433222 1345566555443221 1222345699999999987655555555543
No 53
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.74 E-value=2.4e-17 Score=126.79 Aligned_cols=97 Identities=19% Similarity=0.076 Sum_probs=65.9
Q ss_pred ccEEEEEEeCC-----CCCEEecCccccCC-CCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEE
Q 028684 28 KVLVLMISTPN-----RDDLVFPKGGWEDD-ETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRG 101 (205)
Q Consensus 28 ~~~VLLi~~~~-----~~~W~lPGG~ve~g-Es~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 101 (205)
+.+|||++|.. .|.|.||||++++| ||+++||+||++||||+++.... .++.+........ ..+
T Consensus 15 ~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~-~l~~~~~~~~~~~---------~~v 84 (157)
T cd03426 15 ELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVE-VLGRLPPYYTRSG---------FVV 84 (157)
T ss_pred ceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceE-EEEECCCccccCC---------CEE
Confidence 57999999864 36799999999999 99999999999999999876442 5554432111111 234
Q ss_pred EEEEEEecccccCCC-CccceeeEEEehhHHhhh
Q 028684 102 YMFALEVTEELESWP-EQANYKRIWLSVEEAFKS 134 (205)
Q Consensus 102 ~~f~~~v~~~~~~~~-~~e~~~~~Wv~~~el~~l 134 (205)
++|.+.+.......+ .+|..+.+|++++++.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 85 TPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred EEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence 455554443211112 234556799999999875
No 54
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.73 E-value=1e-16 Score=126.03 Aligned_cols=115 Identities=22% Similarity=0.248 Sum_probs=75.8
Q ss_pred ccEEEEEEeCCC-----CCE-EecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEE
Q 028684 28 KVLVLMISTPNR-----DDL-VFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRG 101 (205)
Q Consensus 28 ~~~VLLi~~~~~-----~~W-~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 101 (205)
+++|||.+|... +.| .+|||++++|||+++||+||++||||+.+.... .++.+.+..... ....
T Consensus 48 ~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~-~~~~~~~~~~~~---------~~~~ 117 (180)
T PRK15393 48 MGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFA-EHGQFYFEDENC---------RVWG 117 (180)
T ss_pred CCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccce-eceeEEecCCCc---------eEEE
Confidence 568999887543 334 689999999999999999999999999865332 566665543221 1233
Q ss_pred EEEEEEecccccCCCCccceeeEEEehhHHhhhc--CChHHHHHHHHHHHhccc
Q 028684 102 YMFALEVTEELESWPEQANYKRIWLSVEEAFKSC--RYDWMIDALKKFLLGMNT 153 (205)
Q Consensus 102 ~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~--~~~~~~~~l~~~~~~l~~ 153 (205)
++|.+...+... ...++..+.+|++++++.++. ..+....++..++.....
T Consensus 118 ~~f~~~~~~~~~-~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~l~~~~~ 170 (180)
T PRK15393 118 ALFSCVSHGPFA-LQEEEVSEVCWMTPEEITARCDEFTPDSLKALALWLTRNAK 170 (180)
T ss_pred EEEEEEeCCCCC-CChHHeeEEEECCHHHHhhhhhhcCccHHHHHHHHHHhhcc
Confidence 456554433221 123344567999999999874 335556666666655433
No 55
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.73 E-value=1.3e-16 Score=136.84 Aligned_cols=124 Identities=20% Similarity=0.223 Sum_probs=82.3
Q ss_pred eeeeEEEEEeeCCCcccccccCCccEEEEEEeCC---CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEE
Q 028684 5 EQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEW 81 (205)
Q Consensus 5 ~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~---~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~ 81 (205)
..|++|+++ +++|||++|.. .|.|.+|||++++|||+++||+||++||||+++.... +.+.+
T Consensus 204 vtv~avv~~--------------~g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~-l~~~~ 268 (340)
T PRK05379 204 VTVDAVVVQ--------------SGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPV-LRGSI 268 (340)
T ss_pred eEEEEEEEE--------------CCEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccc-cceee
Confidence 466777765 45899999865 4679999999999999999999999999999875442 33322
Q ss_pred ----EeeccCccccCCCCCCcEEEEEEEEEeccc--ccCCCCccceeeEEEehhHHhhh--cCChHHHHHHHHHH
Q 028684 82 ----EFRSKSRMNSCNSKEGGCRGYMFALEVTEE--LESWPEQANYKRIWLSVEEAFKS--CRYDWMIDALKKFL 148 (205)
Q Consensus 82 ----~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~--~~~~~~~e~~~~~Wv~~~el~~l--~~~~~~~~~l~~~~ 148 (205)
.|..+... ...+...++|.+..... ......++..+.+|++++++..+ ..+.....+|..++
T Consensus 269 ~~~~~f~~p~r~-----~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~~~~~dh~~ii~~~~ 338 (340)
T PRK05379 269 RDQQVFDHPGRS-----LRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRDRMFEDHFQIITHFL 338 (340)
T ss_pred eeeEEEcCCCCC-----CCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhhhhhhHHHHHHHHHh
Confidence 22222111 11234555665554422 11223445567799999999875 34466677776665
No 56
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=3.8e-17 Score=121.02 Aligned_cols=100 Identities=21% Similarity=0.119 Sum_probs=65.7
Q ss_pred ccEEEEEEeCC-----CCCEEec-CccccCCCCHHHHHHHHHHHHhcccceeCC-CCeEEEEeeccCccccCCCCCCcEE
Q 028684 28 KVLVLMISTPN-----RDDLVFP-KGGWEDDETVSEAACREALEEAGVRGLLDE-NPLGEWEFRSKSRMNSCNSKEGGCR 100 (205)
Q Consensus 28 ~~~VLLi~~~~-----~~~W~lP-GG~ve~gEs~~eaa~REl~EEtGi~~~~~~-~~lg~~~~~~~~~~~~~~~~~~~~~ 100 (205)
+++|||++|.. .|.|.+| ||++++||++ +||+||++||||+.+.... ..++.+.+.... ...
T Consensus 11 ~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~----------~~~ 79 (127)
T cd04693 11 KGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAEG----------FDD 79 (127)
T ss_pred CCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecCC----------eEE
Confidence 46899987753 2679998 9999999999 9999999999999976432 134555443321 122
Q ss_pred EEEEEEEecccccCCCCccceeeEEEehhHHhhhcCCh
Q 028684 101 GYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYD 138 (205)
Q Consensus 101 ~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~ 138 (205)
.++|.............++..+.+|++++++.+++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 117 (127)
T cd04693 80 YYLFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIGHG 117 (127)
T ss_pred EEEEEecCcccccccCHHHhhhEEEeCHHHHHHHHhcC
Confidence 33443332222111123445567999999999987443
No 57
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=1e-16 Score=121.47 Aligned_cols=119 Identities=17% Similarity=0.124 Sum_probs=77.7
Q ss_pred ceeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCC-----CCEEe-cCccccCCCCHHHHHHHHHHHHhcccceeCC-
Q 028684 3 TNEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVF-PKGGWEDDETVSEAACREALEEAGVRGLLDE- 75 (205)
Q Consensus 3 ~~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~-----~~W~l-PGG~ve~gEs~~eaa~REl~EEtGi~~~~~~- 75 (205)
+.++|-|++++... ++++|||.+|... |.|.+ |||++++|||+++||+||++||||+.+....
T Consensus 1 ~h~~v~~~v~~~~~----------~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l 70 (144)
T cd04692 1 WHRTFHCWIITKDE----------GKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDL 70 (144)
T ss_pred CceEEEEEEEEccC----------CCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHe
Confidence 45788888888532 3478888887542 57998 5999999999999999999999999864321
Q ss_pred CCeEEEEeeccCccccCCCCCCcEEEEEEEEEecc--cccCCCCccceeeEEEehhHHhhhc
Q 028684 76 NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTE--ELESWPEQANYKRIWLSVEEAFKSC 135 (205)
Q Consensus 76 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~--~~~~~~~~e~~~~~Wv~~~el~~l~ 135 (205)
..++.+.+...... ........++|.+.... .......++..+.+|++++++.+++
T Consensus 71 ~~~~~~~~~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 128 (144)
T cd04692 71 IPLGTFKIEYDHIG----KLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELL 128 (144)
T ss_pred EEeeEEEEeccccC----CCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHH
Confidence 24566654332110 00111344566555432 1111123455677999999998876
No 58
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.72 E-value=9.7e-17 Score=118.43 Aligned_cols=57 Identities=26% Similarity=0.350 Sum_probs=49.5
Q ss_pred eeeEEEEEeeCCCcccccccCCccEEEEEEe-------CCCCCEEecCccccCCCCHHHHHHHHHHHHhcccce
Q 028684 6 QYRCIPYKFEKNDENKNCKMEKKVLVLMIST-------PNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGL 72 (205)
Q Consensus 6 ~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~-------~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~ 72 (205)
++|+|+|+.+. +..+|||+++ +..+.|.||||+++.||++++||+||++||||+++.
T Consensus 2 ~~g~v~~~~~~----------~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 2 SAGILLYRFRD----------GRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred eEEEEEEEEcC----------CcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 68999998753 4678999985 345679999999999999999999999999999865
No 59
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.71 E-value=3.6e-16 Score=123.41 Aligned_cols=103 Identities=20% Similarity=0.067 Sum_probs=71.0
Q ss_pred ccEEEEEEeCCC----CCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEEE
Q 028684 28 KVLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYM 103 (205)
Q Consensus 28 ~~~VLLi~~~~~----~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 103 (205)
+++|||+++... ..|+||||.+|+||++++||+||++||||+.+.... .++.+........ ...++
T Consensus 58 ~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~-~l~~~~~~~~~~~---------~~~~~ 127 (185)
T PRK11762 58 DDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLT-FLKELSLAPSYFS---------SKMNI 127 (185)
T ss_pred CCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceE-EEEEEecCCCccC---------cEEEE
Confidence 458999998543 349999999999999999999999999999987553 6776643322111 34555
Q ss_pred EEEEeccc-ccCCCCccceeeEEEehhHHhhhcCChHH
Q 028684 104 FALEVTEE-LESWPEQANYKRIWLSVEEAFKSCRYDWM 140 (205)
Q Consensus 104 f~~~v~~~-~~~~~~~e~~~~~Wv~~~el~~l~~~~~~ 140 (205)
|.+..... .....+.+..+..|++++++.+++..+.+
T Consensus 128 f~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~g~i 165 (185)
T PRK11762 128 VLAEDLYPERLEGDEPEPLEVVRWPLADLDELLARPDF 165 (185)
T ss_pred EEEEccccccCCCCCCceeEEEEEcHHHHHHHHHcCCC
Confidence 55443221 11112344567799999999998754444
No 60
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.70 E-value=4.7e-16 Score=122.65 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=76.1
Q ss_pred ceeeeeEEEEEeeCCCcccccccCCccEEEEEEeCC-----CCCEEec-CccccCCCCHHHHHHHHHHHHhcccceeCCC
Q 028684 3 TNEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFP-KGGWEDDETVSEAACREALEEAGVRGLLDEN 76 (205)
Q Consensus 3 ~~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~-----~~~W~lP-GG~ve~gEs~~eaa~REl~EEtGi~~~~~~~ 76 (205)
++.++++++++ ++++|||+++.. .|.|.+| ||++++|||+++||+||++||||+++.....
T Consensus 33 ~h~av~v~i~~-------------~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~ 99 (184)
T PRK03759 33 LHLAFSCYLFD-------------ADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLEL 99 (184)
T ss_pred eeeEEEEEEEc-------------CCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCcccccc
Confidence 35677888876 256899998643 2456664 7999999999999999999999998753322
Q ss_pred CeEEEEeeccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhcC
Q 028684 77 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCR 136 (205)
Q Consensus 77 ~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~ 136 (205)
.++.+.|...... +.......++|.+...+... ...++..+.+|++++++.+++.
T Consensus 100 ~~~~~~~~~~~~~----~~~~~~~~~vf~~~~~~~~~-~~~~Ev~~~~W~~~~el~~~i~ 154 (184)
T PRK03759 100 VLPDFRYRATDPN----GIVENEVCPVFAARVTSALQ-PNPDEVMDYQWVDPADLLRAVD 154 (184)
T ss_pred ccceEEEEEecCC----CceeeEEEEEEEEEECCCCC-CChhHeeeEEEECHHHHHHHHH
Confidence 4555554322111 11112345677766553222 1223445679999999999873
No 61
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=2.8e-16 Score=115.93 Aligned_cols=99 Identities=19% Similarity=0.122 Sum_probs=64.5
Q ss_pred ccEEEEEEeCC-----CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEE
Q 028684 28 KVLVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGY 102 (205)
Q Consensus 28 ~~~VLLi~~~~-----~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 102 (205)
+++|||++|.. .+.|.||||++++|||+.+||+||++||||+.+.... .++...+..... ......+
T Consensus 12 ~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~-~~~~~~~~~~~~-------~~~~~~~ 83 (129)
T cd04699 12 VGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFL-RYPSTVTHEDSG-------VYNVIYL 83 (129)
T ss_pred CCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeee-eeeEEEEEcCCC-------EEEEEEE
Confidence 36899998864 3579999999999999999999999999999876543 333222221110 0123444
Q ss_pred EEEEEecccccCCCCccceeeEEEehhHHhhhc
Q 028684 103 MFALEVTEELESWPEQANYKRIWLSVEEAFKSC 135 (205)
Q Consensus 103 ~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~ 135 (205)
+|.+...... ....++....+|++++++..+.
T Consensus 84 ~~~~~~~~~~-~~~~~e~~~~~w~~~~el~~~~ 115 (129)
T cd04699 84 VFVCEALSGA-VKLSDEHEEYAWVTLEELAILK 115 (129)
T ss_pred EEEeeecCCc-ccCChhheEEEEecHHHhhhhh
Confidence 5554433221 1123344567999999986554
No 62
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.69 E-value=2.7e-16 Score=115.45 Aligned_cols=93 Identities=20% Similarity=0.176 Sum_probs=67.7
Q ss_pred ccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEEEEEEE
Q 028684 28 KVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALE 107 (205)
Q Consensus 28 ~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 107 (205)
++++||++++ .+.|.||||++++||++++||+||++||||+.+.... +++.+.+..... .....+|.+.
T Consensus 10 ~~~vLl~~~~-~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~-~l~~~~~~~~~~---------~~~~~~y~a~ 78 (118)
T cd04665 10 DDGLLLVRHK-DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLT-LVGYYQVDLFES---------GFETLVYPAV 78 (118)
T ss_pred CCEEEEEEeC-CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceE-EEEEEEecCCCC---------cEEEEEEEEE
Confidence 3589999887 4579999999999999999999999999999985443 778876654321 1355666666
Q ss_pred ecccccCCCCccceeeEEEehhHH
Q 028684 108 VTEELESWPEQANYKRIWLSVEEA 131 (205)
Q Consensus 108 v~~~~~~~~~~e~~~~~Wv~~~el 131 (205)
+.......+..|.....|++....
T Consensus 79 ~~~~~~~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 79 SAQLEEKASYLETDGPVLFKNEPE 102 (118)
T ss_pred EEecccccccccccCcEEeccCCc
Confidence 554333235556566799986654
No 63
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.69 E-value=2e-16 Score=124.84 Aligned_cols=115 Identities=21% Similarity=0.143 Sum_probs=79.3
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeCC---------CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeC
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN---------RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLD 74 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~---------~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~ 74 (205)
+.+|++|++.. ++++|||+++.+ ...|+||||++|+||++++||+||++||||+.+...
T Consensus 44 ~~~v~vl~~~~------------~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~ 111 (185)
T TIGR00052 44 GNAAAVLLYDP------------KKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNL 111 (185)
T ss_pred CCeEEEEEEEC------------CCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecce
Confidence 34667777753 346899998753 234889999999999999999999999999998644
Q ss_pred CCCeEEEEeeccCccccCCCCCCcEEEEEEEEEecccc----cCCCCccceeeEEEehhHHhhhcCChHH
Q 028684 75 ENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL----ESWPEQANYKRIWLSVEEAFKSCRYDWM 140 (205)
Q Consensus 75 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~----~~~~~~e~~~~~Wv~~~el~~l~~~~~~ 140 (205)
. .++.+.. .+... ....++|.+.+.... ....++++.+..|++++++.+++..+.+
T Consensus 112 ~-~~~~~~~-~~g~~--------~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~i 171 (185)
T TIGR00052 112 R-KLLSFYS-SPGGV--------TELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGKI 171 (185)
T ss_pred E-EEEEEEc-CCCCC--------cEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCCC
Confidence 3 5555432 22211 246778877765421 1112345567799999999999855544
No 64
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.69 E-value=8.4e-16 Score=112.09 Aligned_cols=107 Identities=21% Similarity=0.144 Sum_probs=75.7
Q ss_pred ccEEEEEEeCC----CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEEE
Q 028684 28 KVLVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYM 103 (205)
Q Consensus 28 ~~~VLLi~~~~----~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 103 (205)
++++||++|.. .|.|.||||+++.+|+++++|.||+.||||+.+.... .++.+.+..++. ....++
T Consensus 12 ~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~-~~~~~~~~~~~~---------~~~~~~ 81 (124)
T cd03425 12 DGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGE-LLATVEHDYPDK---------RVTLHV 81 (124)
T ss_pred CCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccc-eEEEEEeeCCCC---------eEEEEE
Confidence 46899998864 3579999999999999999999999999999876543 667665544322 135566
Q ss_pred EEEEecccccCCCCccceeeEEEehhHHhhhcCChHHHHHHHH
Q 028684 104 FALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKK 146 (205)
Q Consensus 104 f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~~ 146 (205)
|.+....... ...+....+|++++++.++...+.++.+++.
T Consensus 82 ~~~~~~~~~~--~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~ 122 (124)
T cd03425 82 FLVELWSGEP--QLLEHQELRWVPPEELDDLDFPPADVPIVAA 122 (124)
T ss_pred EEEeeeCCCc--ccccCceEEEeeHHHcccCCCCcccHHHHHh
Confidence 6655433221 1233456799999999987665655555543
No 65
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.69 E-value=2.5e-16 Score=125.82 Aligned_cols=114 Identities=22% Similarity=0.195 Sum_probs=77.5
Q ss_pred eeeeEEEEEeeCCCcccccccCCccEEEEEEeCCCC---------CEEecCccccCCCCHHHHHHHHHHHHhcccceeCC
Q 028684 5 EQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNRD---------DLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE 75 (205)
Q Consensus 5 ~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~~---------~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~ 75 (205)
.+|++|++.. ++++|||+++.+.+ .|++|+|.+|+||++++||+||+.||||+.+....
T Consensus 50 ~~V~il~~~~------------~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~ 117 (202)
T PRK10729 50 HAAVLLPFDP------------VRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTK 117 (202)
T ss_pred CeEEEEEEEC------------CCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEE
Confidence 4566777752 24689999885532 38999999999999999999999999999976443
Q ss_pred CCeEEEEeeccCccccCCCCCCcEEEEEEEEEeccc----c-cCCCCccceeeEEEehhHHhhhcCChHH
Q 028684 76 NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE----L-ESWPEQANYKRIWLSVEEAFKSCRYDWM 140 (205)
Q Consensus 76 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~----~-~~~~~~e~~~~~Wv~~~el~~l~~~~~~ 140 (205)
.++.+.. ++.... ...++|.+..+.. . ....+.|.....|++++++.+++..+.+
T Consensus 118 -~l~~~~~-spg~~~--------e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~i 177 (202)
T PRK10729 118 -PVLSYLA-SPGGTS--------ERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKI 177 (202)
T ss_pred -EEEEEEc-CCCcCc--------eEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCCC
Confidence 5555532 222211 4667777764221 1 1112345566799999999998744433
No 66
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.68 E-value=3.4e-16 Score=113.30 Aligned_cols=110 Identities=22% Similarity=0.248 Sum_probs=77.8
Q ss_pred eeeEEEEEeeCCCcccccccCCccEEEEEEeCC--CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEe
Q 028684 6 QYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEF 83 (205)
Q Consensus 6 ~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~--~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~ 83 (205)
++++++++. ++++||+++.. .+.|.+|||+++.||++.++|.||++||+|+.+.... .++.+.+
T Consensus 2 ~~~~i~~~~-------------~~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~-~~~~~~~ 67 (123)
T cd02883 2 AVGAVILDE-------------DGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLR-LLGVYEV 67 (123)
T ss_pred ceEEEEECC-------------CCCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeee-EEEEEEe
Confidence 466777662 36899999887 6889999999999999999999999999999875332 5566655
Q ss_pred eccCccccCCCCCCcEEEEEEEEEecccccC-CCCccceeeEEEehhHHhhhcC
Q 028684 84 RSKSRMNSCNSKEGGCRGYMFALEVTEELES-WPEQANYKRIWLSVEEAFKSCR 136 (205)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~-~~~~e~~~~~Wv~~~el~~l~~ 136 (205)
...... .....++|.+.+...... ....+....+|++++++.+...
T Consensus 68 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~~~~ 114 (123)
T cd02883 68 ESPDEG-------EHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPALAL 114 (123)
T ss_pred eccCCC-------ceEEEEEEEEEeCCCCcCCCCCCccceEEEEcHHHCccccc
Confidence 443211 124667777766543221 1233445679999999987543
No 67
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=8.4e-16 Score=116.52 Aligned_cols=108 Identities=20% Similarity=0.149 Sum_probs=67.2
Q ss_pred ccEEEEEEeCC-----CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCC---CCeEEEEeeccCccccCCCCC-Cc
Q 028684 28 KVLVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE---NPLGEWEFRSKSRMNSCNSKE-GG 98 (205)
Q Consensus 28 ~~~VLLi~~~~-----~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~---~~lg~~~~~~~~~~~~~~~~~-~~ 98 (205)
+++|||++|.. .+.|.+|||++++||++++||+||++||||+.+.... .+++.+.+..+..... +.. ..
T Consensus 12 ~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~ 89 (143)
T cd04694 12 DQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSR--GLPKRH 89 (143)
T ss_pred CCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeeccccccccCC--Ccccce
Confidence 56899998863 3569999999999999999999999999999876431 2556553322211000 111 11
Q ss_pred EEEEEEEEEeccc-----ccCCC-CccceeeEEEehhHHhhhcCC
Q 028684 99 CRGYMFALEVTEE-----LESWP-EQANYKRIWLSVEEAFKSCRY 137 (205)
Q Consensus 99 ~~~~~f~~~v~~~-----~~~~~-~~e~~~~~Wv~~~el~~l~~~ 137 (205)
....+|.+..... ....+ .+|..+.+|++++++.+++.+
T Consensus 90 ~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~ 134 (143)
T cd04694 90 HIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSA 134 (143)
T ss_pred eEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHh
Confidence 2333333322211 11112 234456799999999988754
No 68
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=9e-16 Score=114.97 Aligned_cols=109 Identities=23% Similarity=0.275 Sum_probs=73.1
Q ss_pred eeeeEEEEEeeCCCcccccccCCccEEEEEEeCC-----CCCEEecCccccCCCCHHHHHHHHHHHHhcccc-eeCCCCe
Q 028684 5 EQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRG-LLDENPL 78 (205)
Q Consensus 5 ~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~-----~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~-~~~~~~l 78 (205)
+++++++++. +++|||+++.+ .+.|.+|||+++.||++.+||.||++||||+.+ .+.. .+
T Consensus 1 ~~~~~~i~~~-------------~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~-~~ 66 (133)
T cd04685 1 RAARVVLLDP-------------DDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGP-PV 66 (133)
T ss_pred CeEEEEEEcC-------------CCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccc-eE
Confidence 3678888873 56899998754 246999999999999999999999999999987 4432 33
Q ss_pred EEEE--eeccCccccCCCCCCcEEEEEEEEEecccc-c--CC--CCcc-ceeeEEEehhHHhhh
Q 028684 79 GEWE--FRSKSRMNSCNSKEGGCRGYMFALEVTEEL-E--SW--PEQA-NYKRIWLSVEEAFKS 134 (205)
Q Consensus 79 g~~~--~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~-~--~~--~~~e-~~~~~Wv~~~el~~l 134 (205)
.... |..... ..+...++|.+...... . .+ .+.+ ....+|++++++.+.
T Consensus 67 ~~~~~~f~~~~~-------~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 67 WRRDAAFTFLGV-------DGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred EEEEEEEEecCc-------cceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 3322 221111 11245678887765311 1 11 1112 235699999999886
No 69
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.66 E-value=5.8e-15 Score=113.04 Aligned_cols=93 Identities=26% Similarity=0.250 Sum_probs=69.3
Q ss_pred cEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEEEEEEEe
Q 028684 29 VLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEV 108 (205)
Q Consensus 29 ~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v 108 (205)
+++||+++... .|.+|||++|+|||+++||+||++||||+.+.... ++|.|....... ....++|.+.+
T Consensus 35 ~~~LL~~~~~~-~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~-~lg~~~~~~~~~---------~~~~~vf~A~~ 103 (156)
T TIGR02705 35 DQWLLTEHKRR-GLEFPGGKVEPGETSKEAAIREVMEETGAIVKELH-YIGQYEVEGEST---------DFVKDVYFAEV 103 (156)
T ss_pred CEEEEEEEcCC-cEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeE-EEEEEEecCCCc---------EEEEEEEEEEE
Confidence 37899987754 59999999999999999999999999999887554 788876543321 24666777766
Q ss_pred cccccCCCCccceeeE-EEehhHHhhhc
Q 028684 109 TEELESWPEQANYKRI-WLSVEEAFKSC 135 (205)
Q Consensus 109 ~~~~~~~~~~e~~~~~-Wv~~~el~~l~ 135 (205)
... . +.++..+.. +++++++.+++
T Consensus 104 ~~~-~--~~~e~~E~~~~~~~~~~~~~~ 128 (156)
T TIGR02705 104 SAL-E--SKDDYLETKGPVLLQEIPDII 128 (156)
T ss_pred ecc-c--cCCCceeeEeEEEHHHHHHHH
Confidence 532 2 224445664 89999998876
No 70
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.64 E-value=2.6e-15 Score=115.67 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=75.8
Q ss_pred ceeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCC-----CCEEec-CccccCCCCHHHHHHHHHHHHhcccceeCC-
Q 028684 3 TNEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVFP-KGGWEDDETVSEAACREALEEAGVRGLLDE- 75 (205)
Q Consensus 3 ~~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~-----~~W~lP-GG~ve~gEs~~eaa~REl~EEtGi~~~~~~- 75 (205)
++.++++++++ ++++|||.+|... |.|.+| ||+++.|| .+||+||++||||+++....
T Consensus 26 ~h~~v~v~v~~-------------~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l 90 (158)
T TIGR02150 26 LHRAFSVFLFN-------------EEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPL 90 (158)
T ss_pred eEEEEEEEEEc-------------CCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccce
Confidence 45778888886 2468999887542 779986 79999999 49999999999999876442
Q ss_pred CCeEEEEeeccCccccCCCCCCcEEEEEEEEEecccccCCCCc-cceeeEEEehhHHhhhcCCh
Q 028684 76 NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQ-ANYKRIWLSVEEAFKSCRYD 138 (205)
Q Consensus 76 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~-e~~~~~Wv~~~el~~l~~~~ 138 (205)
..++.+.|...... + .+...++|.+....... +.. |..+.+|++++++.+++..+
T Consensus 91 ~~~~~~~~~~~~~~----g--~~~~~~~f~~~~~~~~~--~~~~Ev~~~~W~~~~el~~~~~~~ 146 (158)
T TIGR02150 91 TVLPRFSYRARDAW----G--EHELCPVFFARAPVPLN--PNPEEVAEYRWVSLEELKEILKAP 146 (158)
T ss_pred EEcceEEEEEecCC----C--cEEEEEEEEEecCCccc--CChhHeeeEEEeCHHHHHHHHhcC
Confidence 12344444322110 1 12455677666554222 333 55567999999999987443
No 71
>PRK08999 hypothetical protein; Provisional
Probab=99.61 E-value=1.1e-14 Score=123.59 Aligned_cols=122 Identities=17% Similarity=0.105 Sum_probs=83.6
Q ss_pred CCceeeeeEEEEEeeCCCcccccccCCccEEEEEEeCC----CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCC
Q 028684 1 MQTNEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDEN 76 (205)
Q Consensus 1 m~~~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~----~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~ 76 (205)
|..+..+.+++.+. +++|||.+|.. .|.|.||||++++||++.+|+.||++||||+.+....
T Consensus 2 ~~~~~~~~~vi~~~-------------~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~- 67 (312)
T PRK08999 2 MKRIHVAAGVIRDA-------------DGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAAR- 67 (312)
T ss_pred CceeEEEEEEEECC-------------CCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecce-
Confidence 77777777777652 45899998864 3679999999999999999999999999999876543
Q ss_pred CeEEEEeeccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhcCChHHHHHHHHH
Q 028684 77 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKF 147 (205)
Q Consensus 77 ~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~~~ 147 (205)
.++.+.+..++.. ...++|.+....... ...+....+|++++++.++...+.++.+++.+
T Consensus 68 ~l~~~~h~~~~~~---------~~i~~y~~~~~~~~~--~~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~l 127 (312)
T PRK08999 68 PLITVRHDYPDKR---------VRLDVRRVTAWQGEP--HGREGQPLAWVAPDELAVYPFPPANQPIVRAL 127 (312)
T ss_pred eEEEEEEEcCCCe---------EEEEEEEEEEecCcc--cCccCCccEEecHHHcccCCCCcchHHHHHHh
Confidence 4555544333221 344566544322111 12234456999999999876666566665544
No 72
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.60 E-value=1.5e-14 Score=114.50 Aligned_cols=113 Identities=17% Similarity=0.126 Sum_probs=72.8
Q ss_pred ceeeeeEEEEEeeCCCcccccccCCccEEEEEEeCC-----CCCEEecCccccCC-CCHHHHHHHHHHHHhcccceeCCC
Q 028684 3 TNEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDD-ETVSEAACREALEEAGVRGLLDEN 76 (205)
Q Consensus 3 ~~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~-----~~~W~lPGG~ve~g-Es~~eaa~REl~EEtGi~~~~~~~ 76 (205)
.+.++.+|++..+ ++..|||++|.. .|.|+||||++|+| |++++||+||++||||+......
T Consensus 29 ~~~aavvl~l~~~-----------~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~- 96 (190)
T PRK10707 29 QRQAAVLIPIVRR-----------PQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVE- 96 (190)
T ss_pred CCCeEEEEEEEEC-----------CCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceE-
Confidence 4556677777532 245888888542 36799999999985 68999999999999999976553
Q ss_pred CeEEEEeeccCccccCCCCCCcEEEEEEEEEecccccCCCC-ccceeeEEEehhHHhhhcC
Q 028684 77 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPE-QANYKRIWLSVEEAFKSCR 136 (205)
Q Consensus 77 ~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~-~e~~~~~Wv~~~el~~l~~ 136 (205)
.+|.+........ ..+..|.+.+.......++ +|..+..|++++++.++..
T Consensus 97 ~lg~l~~~~~~~~---------~~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~~ 148 (190)
T PRK10707 97 VIGVLPPVDSSTG---------YQVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLGR 148 (190)
T ss_pred EEEEeeeeeccCC---------cEEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCccc
Confidence 6777643221111 1233333333322222232 3445679999999988753
No 73
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.60 E-value=9.4e-15 Score=115.79 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=77.0
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCCC--------C--EEecCccccCCCCHHHHHHHHHHHHhccccee
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNRD--------D--LVFPKGGWEDDETVSEAACREALEEAGVRGLL 73 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~~--------~--W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~ 73 (205)
+.+|+++++.. ++++|||+++.+.+ . |++|+|.+|+| ++++||+||+.||||+.+..
T Consensus 45 ~~~v~Vl~~~~------------~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~ 111 (191)
T PRK15009 45 GNGATILLYNA------------KKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGE 111 (191)
T ss_pred CCEEEEEEEEC------------CCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccce
Confidence 35677777763 25689999986543 2 89999999976 69999999999999998764
Q ss_pred CCCCeEEEEeeccCccccCCCCCCcEEEEEEEEEeccc--cc--CCCCccceeeEEEehhHHhhhcCChHH
Q 028684 74 DENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE--LE--SWPEQANYKRIWLSVEEAFKSCRYDWM 140 (205)
Q Consensus 74 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~--~~--~~~~~e~~~~~Wv~~~el~~l~~~~~~ 140 (205)
.. .++.+ |.++.... ...++|.+..... .. ...++|.++..|+|++++.+++....+
T Consensus 112 ~~-~l~~~-~~spG~s~--------e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~i 172 (191)
T PRK15009 112 VR-KLFEL-YMSPGGVT--------ELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGEI 172 (191)
T ss_pred EE-EeeEE-EcCCcccC--------cEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCCC
Confidence 43 55554 33333221 3667777664321 11 112445567799999999999854443
No 74
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.60 E-value=2.7e-14 Score=112.29 Aligned_cols=119 Identities=16% Similarity=0.100 Sum_probs=72.2
Q ss_pred CCccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCC---------------CCeEEEEeeccCccc
Q 028684 26 EKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDE---------------NPLGEWEFRSKSRMN 90 (205)
Q Consensus 26 ~~~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~---------------~~lg~~~~~~~~~~~ 90 (205)
++..+|||+++...+.|.||||++++||++.+||.||++||||+.+.... ..+.+|.....+...
T Consensus 46 ~~~l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~~dpr~ 125 (186)
T cd03670 46 KPILQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVDDPRN 125 (186)
T ss_pred CCeeEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccEEEeccccCCCC
Confidence 35689999999888999999999999999999999999999976532110 012333211111110
Q ss_pred cCCCCCC--cEEEEEEEEEecc---cccCCCCccceeeEEEehhHHhhhcCChHHHHHHHHHHH
Q 028684 91 SCNSKEG--GCRGYMFALEVTE---ELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKFLL 149 (205)
Q Consensus 91 ~~~~~~~--~~~~~~f~~~v~~---~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~~~~~ 149 (205)
+... ....++|...... .......++..+++|+++++++.+.. ...++|+.+++
T Consensus 126 ---td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~~--dH~~Il~~a~~ 184 (186)
T cd03670 126 ---TDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPLYA--NHSQFLKKVAE 184 (186)
T ss_pred ---CCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEccccccccc--CHHHHHHHHHH
Confidence 1111 2333444432111 11111233455779999999986543 34566666654
No 75
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.57 E-value=1.1e-16 Score=132.01 Aligned_cols=132 Identities=15% Similarity=0.079 Sum_probs=76.4
Q ss_pred ccEEEEEEeCC--CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEEEEE
Q 028684 28 KVLVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFA 105 (205)
Q Consensus 28 ~~~VLLi~~~~--~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~ 105 (205)
..+.||.++++ .|.|..++|++|+|||++|||+||++||||+++.... +.....+..... ...+..|+
T Consensus 199 ~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~-~~asQPWP~~p~---------SLMIgc~a 268 (345)
T KOG3084|consen 199 GKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVIS-YVASQPWPLMPQ---------SLMIGCLA 268 (345)
T ss_pred CCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEe-eeecCCCCCCch---------HHHHHHHH
Confidence 34556655443 4679999999999999999999999999999987442 222222220000 00111221
Q ss_pred -EEecccccCCCCccceeeEEEehhHHhhhcCChHHHHHHHHHHHhcccccccccccCCCCCchhhhhhhcCCCCCcccc
Q 028684 106 -LEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKKFLLGMNTERTQLCKSADSEDSTAKEHQMYSPSPGCSVK 184 (205)
Q Consensus 106 -~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (205)
+..........+.|..+++||+.+|+.+.+.. .. ..-.+ .+...|+. |
T Consensus 269 la~~~~~I~vd~dlEleDaqwF~r~ev~~aL~~-----------kg-----~~Rv~--------~~~a~i~~-------P 317 (345)
T KOG3084|consen 269 LAKLNGKISVDKDLELEDAQWFDREEVKSALTT-----------KG-----LVRVQ--------IEKALILI-------P 317 (345)
T ss_pred HHhhCCccccCcchhhhhcccccHHHHHHHHHh-----------cC-----Ccccc--------ccCcceec-------C
Confidence 12222222222334557799999988665432 00 00000 00123444 7
Q ss_pred CCCceeeccCCCCCCC
Q 028684 185 KPSGVHHQLEKSCTND 200 (205)
Q Consensus 185 ~~~~~~~~~~~~~~~~ 200 (205)
.|.+|+|+||.-|.++
T Consensus 318 ~~~aIA~qLI~~~~~~ 333 (345)
T KOG3084|consen 318 PPFAIAHQLILHWVGF 333 (345)
T ss_pred ChhHHHHHHHHHHHcc
Confidence 7779999999999865
No 76
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.57 E-value=9.7e-14 Score=108.97 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=76.9
Q ss_pred ceeeeeEEEEEeeCCCcccccccCCccEEEEEEeCC-----CCCE-EecCccccCCCCHHHHHHHHHHHHhcccceeCC-
Q 028684 3 TNEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDL-VFPKGGWEDDETVSEAACREALEEAGVRGLLDE- 75 (205)
Q Consensus 3 ~~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~-----~~~W-~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~- 75 (205)
+..++-+++|..+.+ +.++||+.+|.. .|.| .+|||++++||++.+||+||++||||+.+....
T Consensus 31 ~h~~v~~~~~~~~~~---------~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~ 101 (180)
T cd03676 31 VTYGVHLNGYVRDED---------GGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQ 101 (180)
T ss_pred eEEEEEEEEEEEcCC---------CCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhh
Confidence 345666666654311 136777777643 2679 599999999999999999999999999865422
Q ss_pred -CCeEEEEeecc-CccccCCCCCCcEEEEEEEEEecccccCCCC-ccceeeEEEehhHHhhhcCC
Q 028684 76 -NPLGEWEFRSK-SRMNSCNSKEGGCRGYMFALEVTEELESWPE-QANYKRIWLSVEEAFKSCRY 137 (205)
Q Consensus 76 -~~lg~~~~~~~-~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~-~e~~~~~Wv~~~el~~l~~~ 137 (205)
..++.+.|... ... .......++|.+.++......++ +|..+..|++++|+.+++..
T Consensus 102 l~~~g~~~~~~~~~~~-----~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l~~ 161 (180)
T cd03676 102 LKPVGVVSYLREGEAG-----GLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRALKE 161 (180)
T ss_pred ceeccEEEEEEEcCCC-----cEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHHHc
Confidence 14554443322 111 11124567777665432222233 34556799999999998744
No 77
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.56 E-value=4.7e-14 Score=104.37 Aligned_cols=44 Identities=32% Similarity=0.382 Sum_probs=38.2
Q ss_pred ccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccce
Q 028684 28 KVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGL 72 (205)
Q Consensus 28 ~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~ 72 (205)
..+||+++... +.|.||||++++||++.+||+||++||||+++.
T Consensus 13 ~~~ll~~r~~~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~ 56 (126)
T cd04663 13 VLELLVFEHPL-AGFQIVKGTVEPGETPEAAALRELQEESGLPSF 56 (126)
T ss_pred eEEEEEEEcCC-CcEECCCccCCCCCCHHHHHHHHHHHHHCCeee
Confidence 35777776655 569999999999999999999999999999963
No 78
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.53 E-value=1.8e-13 Score=100.32 Aligned_cols=44 Identities=39% Similarity=0.361 Sum_probs=37.5
Q ss_pred EEEEEEeCC---CCCEEecCccccCCCCHHHHHHHHHHHHhccccee
Q 028684 30 LVLMISTPN---RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLL 73 (205)
Q Consensus 30 ~VLLi~~~~---~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~ 73 (205)
.+||++++. .+.|.||||++++||++++||+||++||||+++..
T Consensus 16 ~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~ 62 (118)
T cd04674 16 GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDP 62 (118)
T ss_pred CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence 466666643 36799999999999999999999999999998753
No 79
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.46 E-value=6.1e-14 Score=115.31 Aligned_cols=94 Identities=20% Similarity=0.177 Sum_probs=67.6
Q ss_pred EEEEEEeCC--CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEEEEEEE
Q 028684 30 LVLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALE 107 (205)
Q Consensus 30 ~VLLi~~~~--~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 107 (205)
++||.++.+ .|.+++-+|+||+|||+++|+.||++||+||++.... +++...+..+.+ .+.-|.+.
T Consensus 156 ~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vr-Y~~SQPWPfP~S-----------LMigf~ae 223 (279)
T COG2816 156 EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVR-YVGSQPWPFPHS-----------LMLGFMAE 223 (279)
T ss_pred ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeee-EEeccCCCCchh-----------hhhhheee
Confidence 588887654 4779999999999999999999999999999987664 777766665544 33334344
Q ss_pred ecccccCCCCccceeeEEEehhHHhhhc
Q 028684 108 VTEELESWPEQANYKRIWLSVEEAFKSC 135 (205)
Q Consensus 108 v~~~~~~~~~~e~~~~~Wv~~~el~~l~ 135 (205)
...........|..+++||+.+|+..++
T Consensus 224 y~sgeI~~d~~Eleda~WFs~~evl~~L 251 (279)
T COG2816 224 YDSGEITPDEGELEDARWFSRDEVLPAL 251 (279)
T ss_pred eccccccCCcchhhhccccCHhHHhhhc
Confidence 3332222233466678999999965554
No 80
>PLN02709 nudix hydrolase
Probab=99.39 E-value=3e-12 Score=103.00 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=64.6
Q ss_pred CccEEEEEEeCC-----CCCEEecCccccCCC-CHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEE
Q 028684 27 KKVLVLMISTPN-----RDDLVFPKGGWEDDE-TVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCR 100 (205)
Q Consensus 27 ~~~~VLLi~~~~-----~~~W~lPGG~ve~gE-s~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 100 (205)
++.+|||++|.. .|.|.||||++|++| ++.+||+||++||+|+...... .+|.......... ..
T Consensus 49 ~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~-vlg~L~~~~t~sg---------~~ 118 (222)
T PLN02709 49 NELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVT-IISVLEPFVNKKG---------MS 118 (222)
T ss_pred CceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheE-EeeecCCeECCCC---------CE
Confidence 356899998854 378999999999975 7999999999999999865332 5665532211111 24
Q ss_pred EEEEEEEecc--cccCCCC-ccceeeEEEehhHHhhh
Q 028684 101 GYMFALEVTE--ELESWPE-QANYKRIWLSVEEAFKS 134 (205)
Q Consensus 101 ~~~f~~~v~~--~~~~~~~-~e~~~~~Wv~~~el~~l 134 (205)
++-|.+.+.. .....++ +|..+..|+|++++.+.
T Consensus 119 V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 119 VAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred EEEEEEEecCCCCccccCChhhhheeEEecHHHHhCC
Confidence 4455444432 1221233 34456699999988654
No 81
>PLN03143 nudix hydrolase; Provisional
Probab=99.38 E-value=1.9e-11 Score=102.20 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=37.5
Q ss_pred ccEEEEEEeCCC--C--CEEecCccccC-CCCHHHHHHHHHHHHhcccce
Q 028684 28 KVLVLMISTPNR--D--DLVFPKGGWED-DETVSEAACREALEEAGVRGL 72 (205)
Q Consensus 28 ~~~VLLi~~~~~--~--~W~lPGG~ve~-gEs~~eaa~REl~EEtGi~~~ 72 (205)
+.+|||+++.+. + .|+||||.+|+ +|++++||+||++||||+.+.
T Consensus 142 e~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~ 191 (291)
T PLN03143 142 ETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLK 191 (291)
T ss_pred CEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccc
Confidence 456889888652 3 38999999998 589999999999999999853
No 82
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.37 E-value=7.5e-12 Score=92.74 Aligned_cols=45 Identities=33% Similarity=0.317 Sum_probs=41.1
Q ss_pred cEEEEEEeCCCC-CEEecCccccCCCCHHH-HHHHHHHHHhccccee
Q 028684 29 VLVLMISTPNRD-DLVFPKGGWEDDETVSE-AACREALEEAGVRGLL 73 (205)
Q Consensus 29 ~~VLLi~~~~~~-~W~lPGG~ve~gEs~~e-aa~REl~EEtGi~~~~ 73 (205)
.+||+++++..+ .|.||||++++||++.+ ||+||++||||+.+..
T Consensus 24 ~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~ 70 (161)
T COG0494 24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKD 70 (161)
T ss_pred CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeeee
Confidence 689999988876 89999999999999888 9999999999999873
No 83
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.35 E-value=2.9e-11 Score=99.10 Aligned_cols=135 Identities=15% Similarity=0.144 Sum_probs=77.8
Q ss_pred ceeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCC-----CCEEe-----cCccccCCC-------------CHHHHH
Q 028684 3 TNEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVF-----PKGGWEDDE-------------TVSEAA 59 (205)
Q Consensus 3 ~~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~-----~~W~l-----PGG~ve~gE-------------s~~eaa 59 (205)
+++++.+++|+. +++|||.+|... |.|.. |+++.++|| +..+||
T Consensus 55 ~Hra~~v~i~n~-------------~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA 121 (247)
T PLN02552 55 LHRAFSVFLFNS-------------KYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAA 121 (247)
T ss_pred eEEEEEEEEEcC-------------CCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHH
Confidence 567888888873 468888887543 47854 444444432 168999
Q ss_pred HHHHHHHhcccceeCC----CCeEEEEeeccCccccC-C-CCCCcEEEEEEEEE-ecccccCCCCccceeeEEEehhHHh
Q 028684 60 CREALEEAGVRGLLDE----NPLGEWEFRSKSRMNSC-N-SKEGGCRGYMFALE-VTEELESWPEQANYKRIWLSVEEAF 132 (205)
Q Consensus 60 ~REl~EEtGi~~~~~~----~~lg~~~~~~~~~~~~~-~-~~~~~~~~~~f~~~-v~~~~~~~~~~e~~~~~Wv~~~el~ 132 (205)
+||++|||||.+.... .+++.+.|......... + +...+...++|... ..........+|..+.+|++++++.
T Consensus 122 ~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~~el~ 201 (247)
T PLN02552 122 QRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNREELK 201 (247)
T ss_pred HhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEeHHHHH
Confidence 9999999999854211 24566655544320000 0 00011233333222 2221112123444567999999999
Q ss_pred hhc-------CChHHHHHHHHHHHh
Q 028684 133 KSC-------RYDWMIDALKKFLLG 150 (205)
Q Consensus 133 ~l~-------~~~~~~~~l~~~~~~ 150 (205)
+++ ..|+++.+++.++..
T Consensus 202 ~~~~~~~~~~~tpw~~~~~~~~l~~ 226 (247)
T PLN02552 202 EMMRKESGLKLSPWFRLIVDNFLMK 226 (247)
T ss_pred HHHhhcCCcccCHHHHHHHHHHHHH
Confidence 985 367777777766654
No 84
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=99.26 E-value=7.5e-11 Score=85.56 Aligned_cols=59 Identities=25% Similarity=0.247 Sum_probs=50.9
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEe-------CCCCCEEecCccccCCCCHHHHHHHHHHHHhcccce
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMIST-------PNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGL 72 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~-------~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~ 72 (205)
..++|+++|+... +...|||++. ++.|-|++|+|-...||.+..||+||..||+||.+.
T Consensus 3 K~SAGvLlYR~~a----------G~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vd 68 (161)
T COG4119 3 KLSAGVLLYRARA----------GVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVD 68 (161)
T ss_pred cccceeEEEEecC----------CCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeec
Confidence 4678999999864 4788999976 334779999999999999999999999999999874
No 85
>PLN02791 Nudix hydrolase homolog
Probab=99.17 E-value=5.9e-10 Score=103.75 Aligned_cols=118 Identities=14% Similarity=0.018 Sum_probs=74.2
Q ss_pred ceeeeeEEEEEeeCCCcccccccCCccEEEEEEeCC-----CCCEEe-cCccccCCCCHHHHHHHHHHHHhcccceeCC-
Q 028684 3 TNEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVF-PKGGWEDDETVSEAACREALEEAGVRGLLDE- 75 (205)
Q Consensus 3 ~~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~-----~~~W~l-PGG~ve~gEs~~eaa~REl~EEtGi~~~~~~- 75 (205)
+++++-+.+|+. ++++|||.+|.. .|.|.+ +||+++.||+..+||+||+.||+||.+....
T Consensus 31 ~HrAvhVwIfn~------------~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l 98 (770)
T PLN02791 31 YHRAVHVWIYSE------------STQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAF 98 (770)
T ss_pred ceEEEEEEEEEC------------CCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhhe
Confidence 456777888873 245787777743 367998 7999999999999999999999999854221
Q ss_pred CCeEEEEeeccCccccCCCCCCcEEEEEEEEEecccc---cCCC-CccceeeEEEehhHHhhhc
Q 028684 76 NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL---ESWP-EQANYKRIWLSVEEAFKSC 135 (205)
Q Consensus 76 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~---~~~~-~~e~~~~~Wv~~~el~~l~ 135 (205)
.+++.+.+....... +...+...++|.+...... ...+ .+|..+.+|++++|+.+++
T Consensus 99 ~~l~~~~~~~~~~~g---~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l 159 (770)
T PLN02791 99 ELLFVFLQECVINDG---KFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSAL 159 (770)
T ss_pred eeeeeEEEEeeccCC---CcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHH
Confidence 245554332211110 0111234556654422211 1112 3455567999999998776
No 86
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.04 E-value=6.4e-09 Score=81.05 Aligned_cols=101 Identities=19% Similarity=0.251 Sum_probs=61.8
Q ss_pred CccEEEEEEeCC--CCC--EEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEE
Q 028684 27 KKVLVLMISTPN--RDD--LVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGY 102 (205)
Q Consensus 27 ~~~~VLLi~~~~--~~~--W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 102 (205)
++..++|+++.+ .|. .+||+|.++.||+++.||+||++||||+...+.. ....-|..+...+ .. ..+.
T Consensus 86 G~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~--~s~~~f~DPGltn-----~~-~~iv 157 (225)
T KOG3041|consen 86 GKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDM--VSPTVFLDPGLTN-----CN-LCIV 157 (225)
T ss_pred CcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeee--ccccEEcCCCCCC-----Cc-eEEE
Confidence 467899998754 354 6789999999999999999999999999976543 2222344433221 11 1222
Q ss_pred EEEE--Eeccccc---CCCCccceeeEEEehhHHhhhc
Q 028684 103 MFAL--EVTEELE---SWPEQANYKRIWLSVEEAFKSC 135 (205)
Q Consensus 103 ~f~~--~v~~~~~---~~~~~e~~~~~Wv~~~el~~l~ 135 (205)
.+.. .+.+... ...+.|-++..-+++.++.+.+
T Consensus 158 ~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~ 195 (225)
T KOG3041|consen 158 VVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWREL 195 (225)
T ss_pred EEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHH
Confidence 2222 2222111 1122344566788888887654
No 87
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.99 E-value=1.8e-08 Score=72.78 Aligned_cols=100 Identities=19% Similarity=0.205 Sum_probs=66.5
Q ss_pred ccEEEEEEeCCC----CCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEEE
Q 028684 28 KVLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYM 103 (205)
Q Consensus 28 ~~~VLLi~~~~~----~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 103 (205)
++++||.+|... |.|+||+|.++.+|+.+++..|++.+|.++. . ..++.+.+..++.. ....+
T Consensus 13 ~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~H~fth~~---------~~~~~ 79 (118)
T cd03431 13 DGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRLS---L-EPLGTVKHTFTHFR---------LTLHV 79 (118)
T ss_pred CCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCcc---c-ccceeEEEecCCeE---------EEEEE
Confidence 358888888653 6699999999999999999999999987641 1 13455544433321 34456
Q ss_pred EEEEecccccCCCCccceeeEEEehhHHhhhcCChHHHHHHH
Q 028684 104 FALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALK 145 (205)
Q Consensus 104 f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~ 145 (205)
|.+...... .+..+.+|++++++.++.....++.+++
T Consensus 80 ~~~~~~~~~-----~~~~~~~W~~~eel~~~~~p~~~~kil~ 116 (118)
T cd03431 80 YLARLEGDL-----LAPDEGRWVPLEELDEYALPTVMRKILE 116 (118)
T ss_pred EEEEEeCCC-----cCccccEEccHHHHhhCCCCHHHHHHHH
Confidence 665554321 1223569999999998765555555553
No 88
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.81 E-value=3.5e-08 Score=79.00 Aligned_cols=116 Identities=17% Similarity=0.234 Sum_probs=65.7
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeCC-----CCCEEecCccccCCC-CHHHHHHHHHHHHhcccceeCCCC
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDDE-TVSEAACREALEEAGVRGLLDENP 77 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~-----~~~W~lPGG~ve~gE-s~~eaa~REl~EEtGi~~~~~~~~ 77 (205)
+.++.+|++...++ ++.+|||.+|.. .|.-.||||+.|+.+ +-..||+||+.||+|+...... .
T Consensus 42 ~~~aVlI~L~~~~~---------~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~-~ 111 (246)
T KOG3069|consen 42 RKAAVLIPLVQVGS---------GELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVD-V 111 (246)
T ss_pred CCccEEEEEEEcCC---------CceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhh-h
Confidence 34555666654322 457788877643 266899999999855 7788999999999999864332 4
Q ss_pred eEEEE-eeccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhc
Q 028684 78 LGEWE-FRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSC 135 (205)
Q Consensus 78 lg~~~-~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~ 135 (205)
+|... +..+.... ......+.....+... ......|...+.|+|++++..-.
T Consensus 112 ~g~l~~~~~r~~~~-----v~p~v~~l~~~~~l~~-~~ln~gEv~~~F~VPL~~ll~~~ 164 (246)
T KOG3069|consen 112 LGALPPFVLRSGWS-----VFPVVGFLSDKKILPS-LRLNSGEVESAFWVPLTDLLLPK 164 (246)
T ss_pred hhhccceeeccCcc-----cceeEEEEeccccccc-ccCCchheeeeeeeeHHHHhhhh
Confidence 45432 11111110 0001111111111111 11123444567999999996643
No 89
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.74 E-value=4.9e-09 Score=86.97 Aligned_cols=111 Identities=20% Similarity=0.217 Sum_probs=68.1
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeCC-----CCCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCe
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPN-----RDDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPL 78 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~-----~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~l 78 (205)
+..+|+.+++. +.+||+++... .+.|-+|+|.++++|++.++|+||++||||++....
T Consensus 115 ~vgvg~~V~n~-------------~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~---- 177 (295)
T KOG0648|consen 115 RVGVGAFVLNK-------------KKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFV---- 177 (295)
T ss_pred heeeeeeEecC-------------CceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhh----
Confidence 35567777763 36899997633 477999999999999999999999999999964322
Q ss_pred EEEEeeccCccccCCCCCCcEEEEEEEEEeccc-ccCCCCc-cceeeEEEehhHHhhhc
Q 028684 79 GEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE-LESWPEQ-ANYKRIWLSVEEAFKSC 135 (205)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~-~~~~~~~-e~~~~~Wv~~~el~~l~ 135 (205)
-...+...+.... ...+...||.+..... ......+ +...++|+++++.....
T Consensus 178 eVla~r~~H~~~~----~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp 232 (295)
T KOG0648|consen 178 EVLAFRRAHNATF----GLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQP 232 (295)
T ss_pred hHHHHHhhhcchh----hcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhccc
Confidence 2222222211110 0002334555554331 1111222 22344999999887765
No 90
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.66 E-value=1.6e-07 Score=71.99 Aligned_cols=125 Identities=12% Similarity=0.085 Sum_probs=81.4
Q ss_pred eeeeEEEEEeeCCCcccccccCCccEEEEEEeCCC-----CCEEe-cCccccCCCCHHHHHHHHHHHHhccccee--CCC
Q 028684 5 EQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNR-----DDLVF-PKGGWEDDETVSEAACREALEEAGVRGLL--DEN 76 (205)
Q Consensus 5 ~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~-----~~W~l-PGG~ve~gEs~~eaa~REl~EEtGi~~~~--~~~ 76 (205)
++-.+.+|+. ++++||.+|... +.|.= --||--+||+..+|++|-+.+|.||+... ...
T Consensus 34 rAFS~~lFne-------------~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~ 100 (185)
T COG1443 34 RAFSSFLFNE-------------RGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLE 100 (185)
T ss_pred hhhheeEECC-------------CCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccc
Confidence 3455677763 456666655321 33532 34677799999999999999999999762 223
Q ss_pred CeEEEEeeccCccccCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhhcC------ChHHHHHHHHH
Q 028684 77 PLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKSCR------YDWMIDALKKF 147 (205)
Q Consensus 77 ~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~------~~~~~~~l~~~ 147 (205)
.+..|.|...+... .-.+.+.++|.+..+..... ..+|..+.+|++++++.+++. .|++..+++..
T Consensus 101 il~rf~YrA~~~~~----~~E~Eic~V~~~~~~~~~~~-npdEV~~~~wv~~e~l~~~~~~~~~~fsPW~~~~~~~~ 172 (185)
T COG1443 101 ILPRFRYRAADPDG----IVENEICPVLAARLDSALDP-NPDEVMDYRWVSPEDLKEMVDATPWAFSPWFVIQAEND 172 (185)
T ss_pred cccceEEeccCCCC----cceeeeeeEEEEeecCCCCC-ChHHhhheeccCHHHHHHhhcCCceeeChHHHHHhcch
Confidence 56677787665542 22345666776666653332 234556779999999999873 36666655554
No 91
>PLN02839 nudix hydrolase
Probab=98.48 E-value=1.9e-06 Score=74.00 Aligned_cols=105 Identities=13% Similarity=0.145 Sum_probs=68.7
Q ss_pred CccEEEEEEeCC-----CCCEE-ecCccccCCCCHHHHHHHHHHHHhcccceeC--CCCeEEEEeeccCccccCCCCCCc
Q 028684 27 KKVLVLMISTPN-----RDDLV-FPKGGWEDDETVSEAACREALEEAGVRGLLD--ENPLGEWEFRSKSRMNSCNSKEGG 98 (205)
Q Consensus 27 ~~~~VLLi~~~~-----~~~W~-lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~--~~~lg~~~~~~~~~~~~~~~~~~~ 98 (205)
++.++.+-+|.. .|.|. +.+|++..||++.++++||++||+||..... ....|.+.|....... ...
T Consensus 216 g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g-----~~~ 290 (372)
T PLN02839 216 GQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYC-----FKR 290 (372)
T ss_pred CCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCc-----ccc
Confidence 345655544432 24553 5689999999999999999999999974321 1367777765322211 122
Q ss_pred EEEEEEEEEecccccCCCCccc-eeeEEEehhHHhhhcC
Q 028684 99 CRGYMFALEVTEELESWPEQAN-YKRIWLSVEEAFKSCR 136 (205)
Q Consensus 99 ~~~~~f~~~v~~~~~~~~~~e~-~~~~Wv~~~el~~l~~ 136 (205)
...|+|.+.++......+.+.+ .++.+++++|+.+.+.
T Consensus 291 evly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l~ 329 (372)
T PLN02839 291 DVLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVANVIR 329 (372)
T ss_pred CEEEEeeeecCCccccCCCccceeEEEEecHHHHHHHHH
Confidence 4566788887765443344444 4569999999987763
No 92
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=98.18 E-value=1.9e-06 Score=68.48 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=37.2
Q ss_pred cEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHh
Q 028684 29 VLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEA 67 (205)
Q Consensus 29 ~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEt 67 (205)
.+++.|++...+.|.+|||.+++||.+-.+++||+.||+
T Consensus 139 le~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 139 LEFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred eEEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 688999999999999999999999999999999999996
No 93
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.16 E-value=2.1e-05 Score=56.81 Aligned_cols=102 Identities=22% Similarity=0.155 Sum_probs=56.5
Q ss_pred ccEEEEEEeCCC----CCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEEE
Q 028684 28 KVLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYM 103 (205)
Q Consensus 28 ~~~VLLi~~~~~----~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 103 (205)
++++||.+|... |.|+||.--.+. ++..+.+.+.+.+..|+.+.... .++.+.+..++.. ....+
T Consensus 8 ~~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~-~~~~v~H~fSH~~---------~~~~~ 76 (114)
T PF14815_consen 8 QGRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVE-PLGTVKHVFSHRR---------WTIHV 76 (114)
T ss_dssp TSEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S--SEEEEEE-SSEE---------EEEEE
T ss_pred CCEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhhe-ecCcEEEEccceE---------EEEEE
Confidence 568999998774 669999977663 33456666667778888876554 7777766655442 35566
Q ss_pred EEEEecccccCCCCccceeeEEEehhHHhhhcCChHHHHHH
Q 028684 104 FALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDAL 144 (205)
Q Consensus 104 f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l 144 (205)
|.+.+...... .....+|++++++.++.....++.++
T Consensus 77 ~~~~~~~~~~~----~~~~~~W~~~~~l~~~~~p~~~~kil 113 (114)
T PF14815_consen 77 YEVEVSADPPA----EPEEGQWVSLEELDQYPLPTPMRKIL 113 (114)
T ss_dssp EEEEEE-SS--------TTEEEEEGGGGGGS---HHHHHHH
T ss_pred EEEEecCCCCC----CCCCcEEEEHHHHhhCCCCHHHHHHh
Confidence 66666543221 22367999999999876555455443
No 94
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.71 E-value=7.9e-06 Score=68.61 Aligned_cols=46 Identities=30% Similarity=0.411 Sum_probs=41.5
Q ss_pred CccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccce
Q 028684 27 KKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGL 72 (205)
Q Consensus 27 ~~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~ 72 (205)
..-++||++......|.||.|++..+|+-..+|.||+.||||.+..
T Consensus 93 ~~sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~s 138 (348)
T KOG2937|consen 93 KRSRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYS 138 (348)
T ss_pred hhhhhheeeceecccccccCccccccchhhhcchhcccchhhcCHH
Confidence 3568999988877779999999999999999999999999999865
No 95
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=97.06 E-value=0.0023 Score=50.25 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=62.4
Q ss_pred eeeeeEEEEEeeCCCcccccccCCccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcccce------eCCCC
Q 028684 4 NEQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGVRGL------LDENP 77 (205)
Q Consensus 4 ~~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~------~~~~~ 77 (205)
|..|.+|++...- +-..|||+|.... .|.+|||.+.+||+..++..|.+.+-.|.... +. ..
T Consensus 43 RrsVe~Vllvh~h----------~~PHvLLLq~~~~-~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vg-e~ 110 (188)
T PF13869_consen 43 RRSVEGVLLVHEH----------GHPHVLLLQIGNT-FFKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVG-EC 110 (188)
T ss_dssp EEEEEEEEEEEET----------TEEEEEEEEETTT-EEE-SEEE--TT--HHHHHHHHHHHHHB-SSSS----EEE-EE
T ss_pred ceEEEEEEEEecC----------CCcEEEEEeccCc-cccCCccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEec-CE
Confidence 5566666665542 3568999996554 79999999999999999999999999988632 22 25
Q ss_pred eEEEEeeccCccccC----CCCCCcEEEEEEEEEeccccc-CCCCccceeeEEEehhHHhh
Q 028684 78 LGEWEFRSKSRMNSC----NSKEGGCRGYMFALEVTEELE-SWPEQANYKRIWLSVEEAFK 133 (205)
Q Consensus 78 lg~~~~~~~~~~~~~----~~~~~~~~~~~f~~~v~~~~~-~~~~~e~~~~~Wv~~~el~~ 133 (205)
+|.|....-...... .-........+|.+...+... ..|. ..+..=+|+=|+.+
T Consensus 111 l~~WwRp~Fe~~~YPYlP~HitkPKE~~klylV~Lpe~~~F~VPk--n~kL~AvPLFeLyd 169 (188)
T PF13869_consen 111 LGTWWRPNFEPFMYPYLPPHITKPKECIKLYLVQLPEKCLFAVPK--NMKLVAVPLFELYD 169 (188)
T ss_dssp EEEEEESSSSS--BSS--TT-SS-SEEEEEEEEE--SSEEEEEET--TSEEEEEEHHHHTT
T ss_pred EEEEeCCCCCCCCCCCCCcccCChhheeEEEEEecCCCceEecCC--CCeEEeecHhhhhc
Confidence 566533221111000 011223456677776654211 1122 23556677777755
No 96
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=96.87 E-value=0.018 Score=44.09 Aligned_cols=100 Identities=19% Similarity=0.079 Sum_probs=59.1
Q ss_pred ccEEEEEEeCCC-------CCEEe-cCccccCCC--CH-HHH----HHHHHHHHhcccceeCC--CCeEEEEeeccCccc
Q 028684 28 KVLVLMISTPNR-------DDLVF-PKGGWEDDE--TV-SEA----ACREALEEAGVRGLLDE--NPLGEWEFRSKSRMN 90 (205)
Q Consensus 28 ~~~VLLi~~~~~-------~~W~l-PGG~ve~gE--s~-~ea----a~REl~EEtGi~~~~~~--~~lg~~~~~~~~~~~ 90 (205)
..+||+-.|..+ +.+++ -|||+..++ ++ ++. +.||+.||.++.-.... .++|.+.- +...
T Consensus 71 edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINd---d~ne 147 (203)
T COG4112 71 EDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLIND---DTNE 147 (203)
T ss_pred CCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecC---CCcc
Confidence 448988887543 34665 599998755 33 332 67999999999733221 25555432 2211
Q ss_pred cCCCCCCcEEEEEEEEEecccccCCCCccceeeEEEehhHHhhh
Q 028684 91 SCNSKEGGCRGYMFALEVTEELESWPEQANYKRIWLSVEEAFKS 134 (205)
Q Consensus 91 ~~~~~~~~~~~~~f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l 134 (205)
.-..++..+|+....-..-...+.+....+|+.++++.+.
T Consensus 148 ----VgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~~ 187 (203)
T COG4112 148 ----VGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEKF 187 (203)
T ss_pred ----cceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHHH
Confidence 1123566778776543111113444456799999999873
No 97
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.76 E-value=0.011 Score=46.77 Aligned_cols=90 Identities=21% Similarity=0.132 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHhcccceeCC----CCeEEEEeeccCccccCCCCCCcEEEEEEEEEecccccCCCC-ccceeeEEEe
Q 028684 53 ETVSEAACREALEEAGVRGLLDE----NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEELESWPE-QANYKRIWLS 127 (205)
Q Consensus 53 Es~~eaa~REl~EEtGi~~~~~~----~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~~~~~-~e~~~~~Wv~ 127 (205)
.....||+|-|.-|.||...... .+++.+.|..+....+. + +.+.|+..... .....|. +|..+.+|++
T Consensus 103 lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~wG---E-hEiDYiL~~~~--~~~~nPnpnEv~e~ryvs 176 (225)
T KOG0142|consen 103 LGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIWG---E-HEIDYILFLVK--DVTLNPNPNEVSEIRYVS 176 (225)
T ss_pred HHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCcc---c-ceeeEEEEEec--cCCCCCChhhhhHhheec
Confidence 35789999999999999864322 47888888877765432 1 12222222221 2222243 3445679999
Q ss_pred hhHHhhhcC------ChHHHHHHHHHH
Q 028684 128 VEEAFKSCR------YDWMIDALKKFL 148 (205)
Q Consensus 128 ~~el~~l~~------~~~~~~~l~~~~ 148 (205)
.+|+.+++. .|+++-+.+.++
T Consensus 177 ~eelkel~~~~~~~~TPWfkli~~~~l 203 (225)
T KOG0142|consen 177 REELKELVAKASAGFTPWFKLISENFL 203 (225)
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHH
Confidence 999999872 366655544433
No 98
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.46 E-value=0.012 Score=49.27 Aligned_cols=88 Identities=26% Similarity=0.246 Sum_probs=55.6
Q ss_pred EEecCccccCCCCHHHHHHHHHHHHhcccceeCC-CCeEEEEeeccCccccCCCCCCcEEEEEEEEEecccc------cC
Q 028684 42 LVFPKGGWEDDETVSEAACREALEEAGVRGLLDE-NPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEEL------ES 114 (205)
Q Consensus 42 W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~-~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~------~~ 114 (205)
.+|-.|.|+..-+..+-|.||.+||+|.++.... ..+.+| .+.-... | ....+|.+++.... -.
T Consensus 286 lELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y--~sGVG~S---G----~~QTmfy~eVTdA~rsgpGgg~ 356 (405)
T KOG4432|consen 286 LELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKY--ISGVGQS---G----DTQTMFYVEVTDARRSGPGGGE 356 (405)
T ss_pred eeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhhee--ecccCCc---C----CeeEEEEEEeehhhccCCCCCc
Confidence 3556899998899999999999999999975443 122333 2222111 1 24446666654321 12
Q ss_pred CCCccceeeEEEehhHHhhhcCCh
Q 028684 115 WPEQANYKRIWLSVEEAFKSCRYD 138 (205)
Q Consensus 115 ~~~~e~~~~~Wv~~~el~~l~~~~ 138 (205)
..++|.++..-++++++..+.+.+
T Consensus 357 ~ee~E~IEvv~lsle~a~~~~~q~ 380 (405)
T KOG4432|consen 357 KEEDEDIEVVRLSLEDAPSLYRQH 380 (405)
T ss_pred ccccceeeEEEechhhhhHHHhcc
Confidence 234555677889999999887443
No 99
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=96.08 E-value=0.082 Score=43.26 Aligned_cols=106 Identities=16% Similarity=0.292 Sum_probs=63.8
Q ss_pred CccEEEEEEeCC--CCCEEecCccc-cCCCCHHHHHHHHHHHHhcccce---eCCCCeEEEEeeccCccccCCCCCCcEE
Q 028684 27 KKVLVLMISTPN--RDDLVFPKGGW-EDDETVSEAACREALEEAGVRGL---LDENPLGEWEFRSKSRMNSCNSKEGGCR 100 (205)
Q Consensus 27 ~~~~VLLi~~~~--~~~W~lPGG~v-e~gEs~~eaa~REl~EEtGi~~~---~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 100 (205)
++.-+||+++.- .+.|.||-+.. +.++++..+|.|+++.-.|=... +...++|.+.+..+..... .......
T Consensus 137 dr~LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~--e~~~~sk 214 (263)
T KOG4548|consen 137 DRKLYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTT--EEPVSSK 214 (263)
T ss_pred cceEEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccc--cccccce
Confidence 345578888542 35699999999 99999999999999998886532 2224666443333222211 1111223
Q ss_pred EEEEEEE-ecccccCCCCccceeeEEEehhHHhhhcC
Q 028684 101 GYMFALE-VTEELESWPEQANYKRIWLSVEEAFKSCR 136 (205)
Q Consensus 101 ~~~f~~~-v~~~~~~~~~~e~~~~~Wv~~~el~~l~~ 136 (205)
+++|.+. +.+... ....-.++.|++-+++.+.+.
T Consensus 215 ~ff~k~~lv~~~~~--kn~n~edfvWvTkdel~e~l~ 249 (263)
T KOG4548|consen 215 VFFFKASLVANSNQ--KNQNKEDFVWVTKDELGEKLP 249 (263)
T ss_pred eEEeeeeeccccch--hcccccceEEechHHHhhhcc
Confidence 4444333 332211 112223589999999998875
No 100
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=96.02 E-value=0.016 Score=44.57 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=34.4
Q ss_pred cEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHHhcc
Q 028684 29 VLVLMISTPNRDDLVFPKGGWEDDETVSEAACREALEEAGV 69 (205)
Q Consensus 29 ~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi 69 (205)
..|||+|-.+ ..+.+|||.+++||+-.+++.|-+-|-.|-
T Consensus 84 PHvLLLQig~-tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr 123 (221)
T KOG1689|consen 84 PHVLLLQIGN-TFFKLPGGRLRPGEDEADGLKRLLTESLGR 123 (221)
T ss_pred CeEEEEeeCC-EEEecCCCccCCCcchhHHHHHHHHHHhcc
Confidence 5788887543 357899999999999999999999999993
No 101
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=95.81 E-value=0.036 Score=46.46 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=47.8
Q ss_pred EecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEEEEEEEeccc
Q 028684 43 VFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYMFALEVTEE 111 (205)
Q Consensus 43 ~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~ 111 (205)
++-||.++..-|+.+-|..|+.||+|.++.... ++..+.|........ ...++|.+++++.
T Consensus 82 elc~g~idke~s~~eia~eev~eecgy~v~~d~-l~hv~~~~~g~~~s~-------sa~~l~y~ei~es 142 (405)
T KOG4432|consen 82 ELCAGLIDKELSPREIASEEVAEECGYRVDPDD-LIHVITFVVGAHQSG-------SAQHLYYAEIDES 142 (405)
T ss_pred eeeccccccccCHHHHhHHHHHHHhCCcCChhH-ceEEEEEEeccccCc-------cchheeeeecchh
Confidence 456999999999999999999999999998774 888888877655442 2445666776653
No 102
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=94.34 E-value=0.23 Score=40.72 Aligned_cols=104 Identities=16% Similarity=0.148 Sum_probs=64.2
Q ss_pred ccEEEEEEeCCC-CCE-----EecCccccCCCCHHHHHHHHHHHHhcccceeCC--CCeEEEEeeccCccccCCCCCCcE
Q 028684 28 KVLVLMISTPNR-DDL-----VFPKGGWEDDETVSEAACREALEEAGVRGLLDE--NPLGEWEFRSKSRMNSCNSKEGGC 99 (205)
Q Consensus 28 ~~~VLLi~~~~~-~~W-----~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~--~~lg~~~~~~~~~~~~~~~~~~~~ 99 (205)
..++.+-+|.+. ..| ..-+|++-.|-...++|+.|..||+.+...... ...|..+|....+.. +. ...
T Consensus 147 ~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~---~~-~pe 222 (306)
T KOG4313|consen 147 PLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQ---GL-FPE 222 (306)
T ss_pred ceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhh---cc-Ccc
Confidence 355655555443 334 246899999999999999999999999863222 244555544211111 11 114
Q ss_pred EEEEEEEEecccccCCCCccce-eeEEEehhHHhhhc
Q 028684 100 RGYMFALEVTEELESWPEQANY-KRIWLSVEEAFKSC 135 (205)
Q Consensus 100 ~~~~f~~~v~~~~~~~~~~e~~-~~~Wv~~~el~~l~ 135 (205)
..|+|.+.++......+.+.+. .+.-+++.+..+.+
T Consensus 223 ~qYVfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v~~l 259 (306)
T KOG4313|consen 223 TQYVFDLELPLDFIPQNNDGEVQAFELLTLKDCVERL 259 (306)
T ss_pred ceEEEeccCchhhcCCCCCCceeeEeeecHHHHHHHH
Confidence 6788988877654444444443 44888888776654
No 103
>PRK10880 adenine DNA glycosylase; Provisional
Probab=94.00 E-value=0.88 Score=39.51 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=49.0
Q ss_pred ccEEEEEEeCCC----CCEEecCccccCCCCHHHHHHHHHHHHhcccceeCCCCeEEEEeeccCccccCCCCCCcEEEEE
Q 028684 28 KVLVLMISTPNR----DDLVFPKGGWEDDETVSEAACREALEEAGVRGLLDENPLGEWEFRSKSRMNSCNSKEGGCRGYM 103 (205)
Q Consensus 28 ~~~VLLi~~~~~----~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 103 (205)
++++||.+|... |.|+||.. +.. + ..++..|+.|+...... .++.+.+..++.. .....
T Consensus 241 ~~~~~l~~r~~~gl~~gl~~fP~~--~~~----~-~~~~~~~~~~~~~~~~~-~~~~~~H~fTH~~---------~~~~~ 303 (350)
T PRK10880 241 GDEVWLEQRPPSGLWGGLFCFPQF--ADE----E-ELRQWLAQRGIAADNLT-QLTAFRHTFSHFH---------LDIVP 303 (350)
T ss_pred CCEEEEEECCccChhhccccCCCC--cch----h-hHHHHHHhcCCchhhhc-ccCceEEEEeeEE---------EEEEE
Confidence 357888887654 66999963 211 1 24556677787532111 2333332222211 12223
Q ss_pred EEEEecccccCCCCccceeeEEEehhHHhhhcCChHHHHHHHH
Q 028684 104 FALEVTEELESWPEQANYKRIWLSVEEAFKSCRYDWMIDALKK 146 (205)
Q Consensus 104 f~~~v~~~~~~~~~~e~~~~~Wv~~~el~~l~~~~~~~~~l~~ 146 (205)
|.+........ ... ....|++++++.++.....++.+++.
T Consensus 304 ~~~~~~~~~~~-~~~--~~~~w~~~~~~~~~~~p~~~~k~l~~ 343 (350)
T PRK10880 304 MWLPVSSFTGC-MDE--GNGLWYNLAQPPSVGLAAPVERLLQQ 343 (350)
T ss_pred EEEEccccccc-cCC--cCCeEechHHhcccCCcHHHHHHHHH
Confidence 33332211110 011 13369999999987665555555543
No 104
>PRK13910 DNA glycosylase MutY; Provisional
Probab=87.41 E-value=14 Score=31.26 Aligned_cols=27 Identities=7% Similarity=-0.079 Sum_probs=19.3
Q ss_pred eEEEehhHHhhhcCChHHHHHHHHHHH
Q 028684 123 RIWLSVEEAFKSCRYDWMIDALKKFLL 149 (205)
Q Consensus 123 ~~Wv~~~el~~l~~~~~~~~~l~~~~~ 149 (205)
.+|++++++.++.....++.+++.+..
T Consensus 257 ~~w~~~~~~~~~~~p~~~~k~~~~l~~ 283 (289)
T PRK13910 257 IRFYSLKDLETLPISSMTLKILNFLKQ 283 (289)
T ss_pred ceEecHHHhhhcCCcHHHHHHHHHHhh
Confidence 489999999987666656666655443
No 105
>PF14443 DBC1: DBC1
Probab=81.85 E-value=13 Score=27.35 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=30.4
Q ss_pred cEEEEEEeCC-----CCCEE--ecCccccCC-CCHHHHHHHHHHHHhccccee
Q 028684 29 VLVLMISTPN-----RDDLV--FPKGGWEDD-ETVSEAACREALEEAGVRGLL 73 (205)
Q Consensus 29 ~~VLLi~~~~-----~~~W~--lPGG~ve~g-Es~~eaa~REl~EEtGi~~~~ 73 (205)
.++|+.++-+ +|.|. +=||-...+ .++..+|+|=+++-|||+...
T Consensus 8 lkFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~ 60 (126)
T PF14443_consen 8 LKFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSN 60 (126)
T ss_pred eeeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhh
Confidence 4666665433 35675 335555443 368999999999999999753
No 106
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=69.75 E-value=4.5 Score=23.46 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=12.1
Q ss_pred EecCccccCCCCHHHHHHHHHHHHh
Q 028684 43 VFPKGGWEDDETVSEAACREALEEA 67 (205)
Q Consensus 43 ~lPGG~ve~gEs~~eaa~REl~EEt 67 (205)
..-||..-+|--+..+++||+-||.
T Consensus 12 tClggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 12 TCLGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp -----------S-HHHHHHHHHHHH
T ss_pred HHhcccCCCCCCCchHHHHHHHHHH
Confidence 3458888899989999999999996
No 107
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=65.97 E-value=12 Score=23.59 Aligned_cols=33 Identities=18% Similarity=0.130 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCEEecCccccCCCCHHHHHHHHHHHH
Q 028684 31 VLMISTPNRDDLVFPKGGWEDDETVSEAACREALEE 66 (205)
Q Consensus 31 VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl~EE 66 (205)
+-|..+.....|.+|||.+-.+- -.|+|++.|-
T Consensus 13 itl~ys~~~~GWl~Pgg~vi~NP---lkAqR~AE~~ 45 (60)
T PF07026_consen 13 ITLPYSHFKNGWLMPGGKVITNP---LKAQRLAEEL 45 (60)
T ss_pred EEEEEEeccceeecCCCeeEcCH---HHHHHHHHHH
Confidence 44444444566999999987653 2456655443
No 108
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=39.49 E-value=11 Score=32.30 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=33.8
Q ss_pred EEEEEeCC--CCCEEecCccccCCCCHHHHHHHHHHHHhcccce
Q 028684 31 VLMISTPN--RDDLVFPKGGWEDDETVSEAACREALEEAGVRGL 72 (205)
Q Consensus 31 VLLi~~~~--~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~ 72 (205)
+..++++. ...|.||.|++..||-+..+++|+..||+|....
T Consensus 253 ~~~aqS~~~~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~ 296 (348)
T KOG2937|consen 253 VVTAQSYFAKPENWTFPKGKISRGEKPRDASIRSTFEEPGFPFG 296 (348)
T ss_pred ceeecccccccccccCcccccccCCccccchhhhcCCCcCCccc
Confidence 33444433 3459999999999999999999999999998743
No 109
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=34.27 E-value=1.1e+02 Score=26.67 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=16.8
Q ss_pred ccEEEEEEeCCC----CCEEecCccccC
Q 028684 28 KVLVLMISTPNR----DDLVFPKGGWED 51 (205)
Q Consensus 28 ~~~VLLi~~~~~----~~W~lPGG~ve~ 51 (205)
+++++|.++... |.|.||....+.
T Consensus 246 ~~~~~l~kr~~~gl~~gl~~fP~~e~~~ 273 (342)
T COG1194 246 DGEVLLEKRPEKGLLGGLWCFPQFEDEA 273 (342)
T ss_pred CcchhhhhCcccCceecccccccccccc
Confidence 457888877654 568999875443
No 110
>PF06453 LT-IIB: Type II heat-labile enterotoxin , B subunit (LT-IIB); InterPro: IPR010503 These are B subunits from the type II heat-labile enterotoxin. The B subunits form a pentameric ring, which interacts with one A subunit. Thus, the structural arrangement of type I and type II heat-labile enterotoxins are very similar [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TII_F 1QCB_E 1QB5_D.
Probab=27.13 E-value=62 Score=23.04 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=16.0
Q ss_pred ccEEEEEEeCCCCCEEecCccccCCCCHHHHHHHHH
Q 028684 28 KVLVLMISTPNRDDLVFPKGGWEDDETVSEAACREA 63 (205)
Q Consensus 28 ~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~REl 63 (205)
+.+=+-+....++.|.+|||.--| +....+-.|-+
T Consensus 56 ~t~GiYv~sstG~~w~Ipgg~~YP-dN~ls~EmRKi 90 (122)
T PF06453_consen 56 NTKGIYVVSSTGGVWFIPGGQDYP-DNYLSNEMRKI 90 (122)
T ss_dssp TT-EEEEEETTS-EEEE---SSTT-HHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCeEEccCCCcCc-hhHhhHHHHHH
Confidence 334344555556789999997443 44444444433
No 111
>PF12860 PAS_7: PAS fold
Probab=26.91 E-value=31 Score=24.01 Aligned_cols=44 Identities=7% Similarity=0.024 Sum_probs=32.8
Q ss_pred eeeeEEEEEeeCCCcccccccCCccEEEEEEeCCCCCEEecCccccCCCCHHHHHHH
Q 028684 5 EQYRCIPYKFEKNDENKNCKMEKKVLVLMISTPNRDDLVFPKGGWEDDETVSEAACR 61 (205)
Q Consensus 5 ~~vg~i~~~~~~~~~~~~~~~~~~~~VLLi~~~~~~~W~lPGG~ve~gEs~~eaa~R 61 (205)
...|+++|+ .++++++..++....|.+|...+.+|-+..+.+.+
T Consensus 4 l~~Gv~v~D-------------~~~rl~~~N~~~~~l~~~~~~~~~~G~~~~~l~~~ 47 (115)
T PF12860_consen 4 LPQGVAVFD-------------SDGRLVFWNQRFRELFGLPPEMLRPGASFRDLLRR 47 (115)
T ss_pred cCceEEEEc-------------CCCeEEeEcHHHHHHhCCCHHHhcCCCCHHHHHHH
Confidence 345777776 35678888777777799999999889887666554
No 112
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=26.52 E-value=39 Score=29.19 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=20.0
Q ss_pred cccCCCCHHHHHHHHHHHHhcccc
Q 028684 48 GWEDDETVSEAACREALEEAGVRG 71 (205)
Q Consensus 48 ~ve~gEs~~eaa~REl~EEtGi~~ 71 (205)
.|+..+-..+.+.||++||++|-+
T Consensus 408 ~V~~~dLsDe~~MrelReeL~IG~ 431 (466)
T PF09505_consen 408 GVEPMDLSDEYVMRELREELNIGV 431 (466)
T ss_pred CCChhhcccHHHHHHHHHhcCcce
Confidence 467777778999999999998853
No 113
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=23.77 E-value=36 Score=28.88 Aligned_cols=32 Identities=16% Similarity=-0.104 Sum_probs=28.9
Q ss_pred CEEecCccccCCCCHHHHHHHHHHHHhccccee
Q 028684 41 DLVFPKGGWEDDETVSEAACREALEEAGVRGLL 73 (205)
Q Consensus 41 ~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~ 73 (205)
.|.. .|+.+-++++.+++.|++.++||.-...
T Consensus 56 ~W~~-~Gr~~iwl~l~~~~~~lV~~a~~~gf~~ 87 (295)
T KOG0648|consen 56 KWYL-QGRKGIWLKLPEELARLVEEAAKYGFDY 87 (295)
T ss_pred HHHH-ccCcccceechHHHHhHHHHHHhcCcEE
Confidence 5888 9999999999999999999999987553
No 114
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=21.66 E-value=1.2e+02 Score=25.50 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=14.8
Q ss_pred CccEEEEEEeCCC----CCEEecCc
Q 028684 27 KKVLVLMISTPNR----DDLVFPKG 47 (205)
Q Consensus 27 ~~~~VLLi~~~~~----~~W~lPGG 47 (205)
+++++||.++... |.|+||+.
T Consensus 237 ~~~~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 237 YDGEVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred CCCeEEEEeCCCCchhhccccCCCC
Confidence 3567888877653 66999973
Done!