BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028685
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KQN|A Chain A, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|B Chain B, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|C Chain C, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|D Chain D, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|E Chain E, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|F Chain F, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQO|A Chain A, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|B Chain B, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|C Chain C, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|D Chain D, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|E Chain E, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|F Chain F, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KR2|A Chain A, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|B Chain B, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|C Chain C, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|D Chain D, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|E Chain E, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|F Chain F, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
Length = 279
Score = 173 bits (438), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 133/232 (57%), Gaps = 33/232 (14%)
Query: 1 MHLRMFELARDTLNSEG-YCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMV 59
MHLR+FELA+D +N G Y V+ G +SPV DAYKK+GLI A HR+ + LA K+S ++ V
Sbjct: 23 MHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAYHRVIMAELATKNSKWVEV 82
Query: 60 DPWEANQSGYQRTLTVL------------------------SRVKNFLIEAGLISTESL- 94
D WE+ Q ++ TL VL R + + +SL
Sbjct: 83 DTWESLQKEWKETLKVLRHHQEKLEASDCDHQQNSPTLERPGRKRKWTETQDSSQKKSLE 142
Query: 95 -------KVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEI 147
KV L+CG+DLLESFA+P W E + I N+G+IC+ R G D +K I ++++
Sbjct: 143 PKTKAVPKVKLLCGADLLESFAVPNLWKSEDITQIVANYGLICVTRAGNDAQKFIYESDV 202
Query: 148 LDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 199
L K++ NI +V+E + N ISST+IR + RG SI+YL D V +YI + LY
Sbjct: 203 LWKHRSNIHVVNEWIANDISSTKIRRALRRGQSIRYLVPDLVQEYIEKHNLY 254
>pdb|1KKU|A Chain A, Crystal Structure Of Nuclear Human Nicotinamide
Mononucleotide Adenylyltransferase
Length = 279
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 132/232 (56%), Gaps = 33/232 (14%)
Query: 1 MHLRMFELARDTLNSEG-YCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMV 59
MHLR+FELA+D +N G Y V+ G +SPV DAYKK+GLI A HR+ + LA K+S ++ V
Sbjct: 23 MHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAYHRVIMAELATKNSKWVEV 82
Query: 60 DPWEANQSGYQRTLTVL------------------------SRVKNFLIEAGLISTESL- 94
D WE+ Q ++ TL VL R + + +SL
Sbjct: 83 DTWESLQKEWKETLKVLRHHQEKLEASDCDHQQNSPTLERPGRKRKWTETQDSSQKKSLE 142
Query: 95 -------KVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEI 147
KV L+CG+DLLESFA+P W E + I N+G+IC+ R G D +K I ++++
Sbjct: 143 PKTKAVPKVKLLCGADLLESFAVPNLWKSEDITQIVANYGLICVTRAGNDAQKFIYESDV 202
Query: 148 LDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 199
L K++ NI +V+E N ISST+IR + RG SI+YL D V +YI + LY
Sbjct: 203 LWKHRSNIHVVNEWFANDISSTKIRRALRRGQSIRYLVPDLVQEYIEKHNLY 254
>pdb|1GZU|A Chain A, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|B Chain B, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|C Chain C, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
Length = 290
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 130/231 (56%), Gaps = 33/231 (14%)
Query: 2 HLRMFELARDTLNSEG-YCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVD 60
HLR+FELA+D N G Y V+ G +SPV DAYKK+GLI A HR+ LA K+S ++ VD
Sbjct: 35 HLRLFELAKDYXNGTGRYTVVKGIISPVGDAYKKKGLIPAYHRVIXAELATKNSKWVEVD 94
Query: 61 PWEANQSGYQRTLTVL------------------------SRVKNFLIEAGLISTESL-- 94
WE+ Q ++ TL VL R + + +SL
Sbjct: 95 TWESLQKEWKETLKVLRHHQEKLEASDCDHQQNSPTLERPGRKRKWTETQDSSQKKSLEP 154
Query: 95 ------KVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEIL 148
KV L+CG+DLLESFA+P W E + I N+G+IC+ R G D +K I ++++L
Sbjct: 155 KTKAVPKVKLLCGADLLESFAVPNLWKSEDITQIVANYGLICVTRAGNDAQKFIYESDVL 214
Query: 149 DKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 199
K++ NI +V+E + N ISST+IR + RG SI+YL D V +YI + LY
Sbjct: 215 WKHRSNIHVVNEWIANDISSTKIRRALRRGQSIRYLVPDLVQEYIEKHNLY 265
>pdb|1NUP|A Chain A, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complex With Nmn
pdb|1NUP|B Chain B, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complex With Nmn
pdb|1NUQ|A Chain A, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Naad
pdb|1NUQ|B Chain B, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Naad
pdb|1NUR|A Chain A, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE
pdb|1NUR|B Chain B, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE
pdb|1NUS|A Chain A, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Atp Analog And Nmn
pdb|1NUS|B Chain B, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Atp Analog And Nmn
pdb|1NUT|A Chain A, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Atp Analog
pdb|1NUT|B Chain B, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Atp Analog
pdb|1NUU|A Chain A, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Nad
pdb|1NUU|B Chain B, Crystal Structure Of Human Cytosolic NmnNAMN
ADENYLYLTRANSFERASE Complexed With Nad
Length = 252
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 127/213 (59%), Gaps = 14/213 (6%)
Query: 1 MHLRMFELARDTLNSEG-YCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMV 59
MHLRMFE+ARD L+ G Y VI G +SPVND Y K+ L ++ HR+ + LA ++SD+I V
Sbjct: 21 MHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRV 80
Query: 60 DPWEANQSGYQRTLTVLSRVKNFLIEA-----------GLISTESL--KVMLVCGSDLLE 106
DPWE+ Q+ + T+ VL + L+ + L ST + ++ L+CG+D+L+
Sbjct: 81 DPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLK 140
Query: 107 SFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQI 166
+F P W + I FG++C+ R D + I+++ IL ++ NI L E V N+I
Sbjct: 141 TFQTPNLWKDAHIQEIVEKFGLVCVGRVSHDPKGYIAESPILRMHQHNIHLAKEPVQNEI 200
Query: 167 SSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 199
S+T IR + +G S+KYL D VI YI++ LY
Sbjct: 201 SATYIRRALGQGQSVKYLIPDAVITYIKDHGLY 233
>pdb|1YUM|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
pdb|1YUM|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
pdb|1YUM|C Chain C, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
pdb|1YUM|D Chain D, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
pdb|1YUN|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
pdb|1YUN|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
Length = 242
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 32/183 (17%)
Query: 32 YKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLIST 91
+++ +SA R+ + A + + VDP E + T+ L V+ A L +
Sbjct: 65 HRETPQVSAAQRLAMVERAVAGVERLTVDPRELQRDKPSYTIDTLESVR-----AELAAD 119
Query: 92 ESLKVML----VCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVE-------- 139
+ L +++ CG +P + E + C ++ ++R D E
Sbjct: 120 DQLFMLIGWDAFCG--------LPTWHRWEALLDHCH---IVVLQRPDADSEPPESLRDL 168
Query: 140 ---KIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 196
+ ++D + L G I V + P +S+T+IR + G S+++L D V++YI
Sbjct: 169 LAARSVADPQALKGPGGQITFVWQ-TPLAVSATQIRALLGAGRSVRFLVPDAVLNYIEAH 227
Query: 197 RLY 199
LY
Sbjct: 228 HLY 230
>pdb|1YUL|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Pseudomonas Aeruginosa
Length = 242
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 32/183 (17%)
Query: 32 YKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLIST 91
+++ +SA R+ A + + VDP E + T+ L V+ A L +
Sbjct: 65 HRETPQVSAAQRLAXVERAVAGVERLTVDPRELQRDKPSYTIDTLESVR-----AELAAD 119
Query: 92 ESLKVML----VCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVE-------- 139
+ L ++ CG +P + E + C ++ ++R D E
Sbjct: 120 DQLFXLIGWDAFCG--------LPTWHRWEALLDHCH---IVVLQRPDADSEPPESLRDL 168
Query: 140 ---KIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 196
+ ++D + L G I V + P +S+T+IR + G S+++L D V++YI
Sbjct: 169 LAARSVADPQALKGPGGQITFVWQ-TPLAVSATQIRALLGAGRSVRFLVPDAVLNYIEAH 227
Query: 197 RLY 199
LY
Sbjct: 228 HLY 230
>pdb|1KAM|A Chain A, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAM|B Chain B, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAM|C Chain C, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAM|D Chain D, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|A Chain A, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|B Chain B, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|C Chain C, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|D Chain D, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|E Chain E, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|F Chain F, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
Length = 194
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 27/159 (16%)
Query: 42 HRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCG 101
HR+ + LA +S+ ++ E + G T +S +K + ++ + G
Sbjct: 60 HRVEMLKLAIQSNPSFKLELVEMEREGPSYTFDTVSLLKQ--------RYPNDQLFFIIG 111
Query: 102 SDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDEL 161
+D++E +P ++ +++ + + GV +R G VE L+
Sbjct: 112 ADMIE--YLPKWYKLDELLNLIQFIGV---KRPGFHVET-------------PYPLLFAD 153
Query: 162 VPN-QISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 199
VP ++SST IR+ YL DKV Y+ E+ LY
Sbjct: 154 VPEFEVSSTMIRERFKSKKPTDYLIPDKVKKYVEENGLY 192
>pdb|2H2A|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Staphylococcus Aureus: Product
Bound Form 2
pdb|2H2A|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Staphylococcus Aureus: Product
Bound Form 2
Length = 189
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 65/187 (34%), Gaps = 28/187 (14%)
Query: 13 LNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRT 72
L + + + +MSP+ K I +HR+ + + F + E + G T
Sbjct: 29 LQPDEFYFLPSFMSPLK---KHHDFIDVQHRLTMIQMIIDELGFGDIXDDEIKRGGQSYT 85
Query: 73 LTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIR 132
+ K + ++ V G+D W + F V+
Sbjct: 86 YDTIKAFKE--------QHKDSELYFVIGTDQYNQLEK---WYQIEYLKEMVTFVVVNRD 134
Query: 133 REGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDY 192
+ Q+VE N + ++ ISST IR + G SI+ L V +Y
Sbjct: 135 KNSQNVE--------------NAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENY 180
Query: 193 IRESRLY 199
I+ LY
Sbjct: 181 IKGEGLY 187
>pdb|2H29|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Staphylococcus Aureus: Product
Bound Form 1
pdb|2H29|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Staphylococcus Aureus: Product
Bound Form 1
Length = 189
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 149 DKNKGNIK--LVDELVPN-QISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 199
DKN N++ ++ +P ISST IR + G SI+ L V +YI+ LY
Sbjct: 134 DKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLY 187
>pdb|2V6Z|M Chain M, Solution Structure Of Amino Terminal Domain Of Human Dna
Polymerase Epsilon Subunit B
Length = 99
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 149 DKNKGNIKLVDELVPNQI-----SSTRIRDCICRGLSIKYLTE 186
D N + +L ++ P ++ S+ ++R + RG +IKYLTE
Sbjct: 13 DPNSSSARLQVDMAPERLRSRALSAFKLRGLLLRGEAIKYLTE 55
>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation
Length = 293
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 67 SGYQRTLTVLSRVKNF-LIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRN 125
SG R L R +F LI + + L + L E A FW + C N
Sbjct: 73 SGVIRLLDWFERPDSFVLILERMEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHN 132
Query: 126 FGVICIRREGQDVEKIISDNEILDKNKGNIKLVD 159
GV+ R+ +D +N ++D N+G +KL+D
Sbjct: 133 CGVL--HRDIKD------ENILIDLNRGELKLID 158
>pdb|1B25|A Chain A, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|B Chain B, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|C Chain C, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|D Chain D, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B4N|A Chain A, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|B Chain B, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|C Chain C, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|D Chain D, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
Length = 619
Score = 26.9 bits (58), Expect = 8.1, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 127 GVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTE 186
G + + EGQ+ E + +L N G KL + V N+I+ D I G+SI ++ E
Sbjct: 292 GNVVLDAEGQESELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVME 351
>pdb|1VRP|A Chain A, The 2.1 Structure Of T. Californica Creatine Kinase
Complexed With The Transition-State Analogue Complex,
Adp- Mg 2+ NO3-CREATINE
pdb|1VRP|B Chain B, The 2.1 Structure Of T. Californica Creatine Kinase
Complexed With The Transition-State Analogue Complex,
Adp- Mg 2+ NO3-CREATINE
Length = 381
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 143 SDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIK 182
+D D N+ N+K D+L PN + S+R+R G SIK
Sbjct: 103 TDKHKTDLNQENLKGGDDLDPNYVLSSRVR----TGRSIK 138
>pdb|1I0E|A Chain A, Crystal Structure Of Creatine Kinase From Human Muscle
pdb|1I0E|B Chain B, Crystal Structure Of Creatine Kinase From Human Muscle
pdb|1I0E|C Chain C, Crystal Structure Of Creatine Kinase From Human Muscle
pdb|1I0E|D Chain D, Crystal Structure Of Creatine Kinase From Human Muscle
Length = 381
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 143 SDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLT 185
+D D N N+K D+L PN + S+R+R G SIK T
Sbjct: 103 TDKHKTDLNHENLKGGDDLDPNYVLSSRVR----TGRSIKGYT 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,887,445
Number of Sequences: 62578
Number of extensions: 226281
Number of successful extensions: 732
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 712
Number of HSP's gapped (non-prelim): 45
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)