Query 028685
Match_columns 205
No_of_seqs 176 out of 1145
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 15:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02945 nicotinamide-nucleoti 100.0 1.5E-49 3.3E-54 323.1 20.3 200 1-200 37-236 (236)
2 TIGR00482 nicotinate (nicotina 100.0 5E-48 1.1E-52 305.9 17.6 179 1-199 12-193 (193)
3 PRK06973 nicotinic acid mononu 100.0 4.7E-48 1E-52 314.4 17.2 183 1-201 37-243 (243)
4 cd09286 NMNAT_Eukarya Nicotina 100.0 5.6E-47 1.2E-51 305.7 18.3 197 1-199 15-225 (225)
5 COG1057 NadD Nicotinic acid mo 100.0 5.7E-47 1.2E-51 298.3 15.6 176 1-201 18-197 (197)
6 PRK00071 nadD nicotinic acid m 100.0 7E-46 1.5E-50 295.8 17.0 181 1-200 19-202 (203)
7 cd02165 NMNAT Nicotinamide/nic 100.0 5.9E-43 1.3E-47 276.7 16.8 178 1-199 14-192 (192)
8 PRK07152 nadD putative nicotin 100.0 3.3E-42 7.1E-47 294.3 15.9 169 1-201 16-186 (342)
9 PRK08887 nicotinic acid mononu 100.0 9.3E-42 2E-46 265.5 13.2 153 1-203 17-174 (174)
10 KOG3199 Nicotinamide mononucle 100.0 6.3E-35 1.4E-39 225.4 16.6 202 1-202 23-233 (234)
11 TIGR01510 coaD_prev_kdtB pante 100.0 3.2E-28 6.9E-33 186.3 10.6 140 1-196 14-154 (155)
12 cd02163 PPAT Phosphopantethein 99.9 3.7E-27 7.9E-32 180.0 9.3 139 1-195 14-153 (153)
13 PRK00168 coaD phosphopantethei 99.9 3.3E-26 7.1E-31 175.8 11.4 140 1-196 16-156 (159)
14 PF01467 CTP_transf_2: Cytidyl 99.9 8.7E-24 1.9E-28 160.2 6.4 144 1-174 12-157 (157)
15 COG0669 CoaD Phosphopantethein 99.7 5.7E-18 1.2E-22 126.5 9.1 141 1-196 17-157 (159)
16 cd02168 NMNAT_Nudix Nicotinami 99.5 3.8E-14 8.1E-19 110.9 10.1 144 1-197 14-166 (181)
17 cd02166 NMNAT_Archaea Nicotina 99.5 1.7E-13 3.7E-18 105.6 12.1 137 1-198 14-158 (163)
18 TIGR01527 arch_NMN_Atrans nico 99.5 1.5E-13 3.2E-18 105.9 11.6 140 1-197 14-155 (165)
19 PRK13964 coaD phosphopantethei 99.5 8.7E-14 1.9E-18 104.2 8.9 125 1-179 16-140 (140)
20 cd02039 cytidylyltransferase_l 99.5 3E-13 6.5E-18 101.1 9.1 127 1-174 14-143 (143)
21 TIGR00339 sopT ATP sulphurylas 99.5 1.5E-12 3.3E-17 112.5 14.3 160 1-194 198-382 (383)
22 PRK01153 nicotinamide-nucleoti 99.5 1.1E-12 2.5E-17 102.0 11.9 140 1-197 15-158 (174)
23 smart00764 Citrate_ly_lig Citr 99.4 3.3E-12 7.2E-17 100.0 11.7 50 1-60 14-63 (182)
24 cd02169 Citrate_lyase_ligase C 99.4 1E-12 2.2E-17 110.2 8.3 157 1-193 129-297 (297)
25 PRK05379 bifunctional nicotina 99.3 2.7E-11 5.9E-16 103.7 9.8 146 1-197 21-172 (340)
26 cd02167 NMNAT_NadR Nicotinamid 99.1 1.2E-09 2.6E-14 83.8 9.8 58 1-65 14-73 (158)
27 PRK13793 nicotinamide-nucleoti 98.9 1.8E-08 3.8E-13 79.4 10.8 47 1-53 19-66 (196)
28 TIGR00124 cit_ly_ligase [citra 98.9 2.2E-09 4.7E-14 91.5 6.0 159 1-197 154-330 (332)
29 cd02170 cytidylyltransferase c 98.9 7E-09 1.5E-13 77.4 7.5 118 1-176 16-134 (136)
30 PF08218 Citrate_ly_lig: Citra 98.7 8E-08 1.7E-12 73.9 6.8 155 1-193 14-182 (182)
31 PRK08099 bifunctional DNA-bind 98.6 7.5E-07 1.6E-11 77.9 11.1 62 1-64 67-132 (399)
32 TIGR01526 nadR_NMN_Atrans nico 98.3 9E-07 2E-11 75.5 5.7 56 1-63 16-74 (325)
33 PRK13671 hypothetical protein; 98.3 2.9E-06 6.3E-11 71.2 7.6 45 1-50 15-61 (298)
34 PRK00777 phosphopantetheine ad 98.2 4.8E-06 1E-10 63.5 6.9 47 1-53 16-65 (153)
35 COG3053 CitC Citrate lyase syn 98.2 3.5E-06 7.5E-11 69.6 5.8 50 1-60 160-209 (352)
36 cd02064 FAD_synthetase_N FAD s 98.2 3.3E-05 7.1E-10 60.4 11.1 91 1-107 14-112 (180)
37 cd02171 G3P_Cytidylyltransfera 97.9 4.9E-05 1.1E-09 56.0 7.7 47 1-50 16-62 (129)
38 TIGR00125 cyt_tran_rel cytidyl 97.6 0.00012 2.5E-09 47.3 4.4 50 1-54 14-64 (66)
39 cd02174 CCT CTP:phosphocholine 97.5 0.0015 3.2E-08 49.6 10.3 83 1-107 17-101 (150)
40 COG1056 NadR Nicotinamide mono 97.4 0.0002 4.4E-09 55.3 4.7 47 1-53 18-65 (172)
41 PF01747 ATP-sulfurylase: ATP- 97.2 0.0062 1.3E-07 49.0 11.0 160 1-195 35-213 (215)
42 PRK05627 bifunctional riboflav 97.2 0.0047 1E-07 52.3 10.5 89 1-104 28-124 (305)
43 PRK07143 hypothetical protein; 97.2 0.0039 8.6E-08 52.1 9.7 131 1-179 30-163 (279)
44 cd02164 PPAT_CoAS phosphopante 97.1 0.0013 2.9E-08 49.5 6.0 49 1-54 14-66 (143)
45 TIGR00083 ribF riboflavin kina 97.0 0.012 2.5E-07 49.5 11.5 91 1-107 13-111 (288)
46 cd00517 ATPS ATP-sulfurylase. 96.9 0.033 7.2E-07 48.1 13.4 163 1-195 171-352 (353)
47 TIGR01518 g3p_cytidyltrns glyc 96.8 0.0026 5.5E-08 46.6 5.2 46 1-49 13-58 (125)
48 PRK04149 sat sulfate adenylylt 96.4 0.16 3.4E-06 44.5 14.0 160 1-196 201-380 (391)
49 TIGR02199 rfaE_dom_II rfaE bif 96.3 0.042 9.1E-07 41.3 8.7 46 1-50 26-74 (144)
50 cd02173 ECT CTP:phosphoethanol 96.2 0.011 2.4E-07 45.0 5.3 81 1-106 17-100 (152)
51 COG2046 MET3 ATP sulfurylase ( 95.5 0.57 1.2E-05 40.5 13.0 160 1-196 198-376 (397)
52 PRK05537 bifunctional sulfate 95.3 0.67 1.5E-05 42.7 13.9 163 1-195 201-383 (568)
53 cd02156 nt_trans nucleotidyl t 95.0 0.042 9.1E-07 38.8 4.1 43 1-50 14-58 (105)
54 PTZ00308 ethanolamine-phosphat 94.5 0.25 5.3E-06 42.8 8.3 44 1-49 26-71 (353)
55 COG0196 RibF FAD synthase [Coe 94.3 0.55 1.2E-05 39.8 9.8 61 1-63 30-95 (304)
56 PLN02406 ethanolamine-phosphat 93.8 0.23 4.9E-06 43.9 6.9 83 1-104 68-151 (418)
57 COG0615 TagD Cytidylyltransfer 93.5 0.16 3.5E-06 38.0 4.7 43 1-48 16-61 (140)
58 PTZ00308 ethanolamine-phosphat 93.4 0.16 3.5E-06 43.9 5.3 79 1-105 207-289 (353)
59 PF05636 HIGH_NTase1: HIGH Nuc 93.2 0.093 2E-06 46.0 3.6 45 1-48 16-60 (388)
60 PLN02413 choline-phosphate cyt 89.8 3 6.5E-05 35.0 8.7 49 1-53 42-92 (294)
61 PRK11316 bifunctional heptose 88.0 3.9 8.4E-05 36.5 8.9 52 1-57 355-409 (473)
62 KOG0564 5,10-methylenetetrahyd 85.4 3.2 7E-05 37.3 6.7 74 3-85 66-146 (590)
63 COG1323 Predicted nucleotidylt 83.3 4.6 9.9E-05 35.0 6.7 33 164-196 203-237 (358)
64 PF06574 FAD_syn: FAD syntheta 80.4 2.3 4.9E-05 32.4 3.5 93 1-107 20-119 (157)
65 PRK15364 pathogenicity island 74.5 3.6 7.8E-05 32.0 3.0 22 178-199 92-113 (196)
66 PRK13670 hypothetical protein; 68.3 2.6 5.7E-05 37.0 1.3 32 164-195 199-232 (388)
67 cd02172 RfaE_N N-terminal doma 68.1 7.5 0.00016 29.0 3.5 44 1-49 19-64 (144)
68 PRK13660 hypothetical protein; 66.3 62 0.0013 25.3 11.4 131 45-194 34-176 (182)
69 PF02201 SWIB: SWIB/MDM2 domai 51.9 7.2 0.00016 25.8 0.8 16 187-202 27-42 (76)
70 PLN02388 phosphopantetheine ad 50.7 9.1 0.0002 29.8 1.4 49 1-53 34-85 (177)
71 PRK01170 phosphopantetheine ad 50.1 20 0.00043 30.7 3.4 47 1-53 15-63 (322)
72 smart00151 SWIB SWI complex, B 43.1 22 0.00048 23.4 2.2 17 185-201 25-41 (77)
73 PLN02660 pantoate--beta-alanin 42.0 39 0.00084 28.4 3.9 47 1-50 35-84 (284)
74 KOG1946 RNA polymerase I trans 41.0 18 0.00038 29.7 1.7 20 183-202 122-141 (240)
75 COG1167 ARO8 Transcriptional r 40.5 58 0.0013 29.1 5.1 27 25-52 232-258 (459)
76 PLN02388 phosphopantetheine ad 39.6 69 0.0015 24.9 4.7 15 163-177 152-166 (177)
77 cd00560 PanC Pantoate-beta-ala 39.4 46 0.001 27.9 4.0 47 1-50 36-85 (277)
78 COG1019 Predicted nucleotidylt 39.1 48 0.001 25.2 3.6 51 125-175 92-146 (158)
79 COG2247 LytB Putative cell wal 38.6 1.4E+02 0.003 25.7 6.7 58 57-139 55-112 (337)
80 PF03433 EspA: EspA-like secre 37.9 11 0.00023 29.6 0.0 18 182-199 96-113 (188)
81 PF07875 Coat_F: Coat F domain 36.8 14 0.00031 23.3 0.5 39 164-202 25-63 (64)
82 TIGR00018 panC pantoate--beta- 36.0 51 0.0011 27.7 3.7 47 1-50 36-85 (282)
83 PF10828 DUF2570: Protein of u 34.3 51 0.0011 23.4 3.0 31 165-195 77-107 (110)
84 PRK05718 keto-hydroxyglutarate 33.9 2.4E+02 0.0053 22.5 8.4 120 38-195 24-148 (212)
85 PF12518 DUF3721: Protein of u 32.7 38 0.00082 18.9 1.6 25 6-30 7-31 (34)
86 PF06908 DUF1273: Protein of u 32.4 1.3E+02 0.0028 23.3 5.3 111 69-193 55-175 (177)
87 PRK13670 hypothetical protein; 32.2 65 0.0014 28.3 3.9 46 1-50 16-62 (388)
88 PRK00380 panC pantoate--beta-a 31.5 72 0.0016 26.8 3.9 47 1-50 36-85 (281)
89 TIGR01182 eda Entner-Doudoroff 29.8 2.7E+02 0.0059 22.1 6.8 120 38-195 17-141 (204)
90 PRK06015 keto-hydroxyglutarate 29.5 2.5E+02 0.0054 22.3 6.5 121 38-195 13-137 (201)
91 PRK13477 bifunctional pantoate 26.8 1.1E+02 0.0023 28.1 4.5 47 1-50 34-83 (512)
92 PLN02406 ethanolamine-phosphat 25.6 1.1E+02 0.0024 27.2 4.2 52 1-58 266-321 (418)
93 PF03564 DUF1759: Protein of u 23.2 89 0.0019 22.7 2.8 49 34-85 21-69 (145)
94 PF02569 Pantoate_ligase: Pant 22.5 90 0.002 26.2 2.9 47 1-50 36-85 (280)
95 PF11868 DUF3388: Protein of u 22.3 50 0.0011 25.6 1.2 14 164-177 83-96 (192)
96 PRK00979 tetrahydromethanopter 21.5 1.1E+02 0.0024 26.0 3.3 58 39-107 161-231 (308)
97 KOG0037 Ca2+-binding protein, 21.0 1.1E+02 0.0024 24.8 2.9 30 164-196 139-168 (221)
No 1
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=100.00 E-value=1.5e-49 Score=323.15 Aligned_cols=200 Identities=73% Similarity=1.235 Sum_probs=170.2
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||+.+|+.|.+.+++|++++||++++|++++|+|+..++++||++||++|++++++++|++||+++++++||++||++|+
T Consensus 37 gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~~~~~~V~~~E~~~~~~syT~dtL~~l~ 116 (236)
T PLN02945 37 MHLRMFELARDALMSEGYHVLGGYMSPVNDAYKKKGLASAEHRIQMCQLACEDSDFIMVDPWEARQSTYQRTLTVLARVE 116 (236)
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEecHHHhCCCCCccHHHHHHHHH
Confidence 89999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred HHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcC
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE 160 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~ 160 (205)
++||+.++.+.+..++|||||+|++.+|++|+.|++++.++|++.|+|+|+.|+|.+......+...+.....++++++.
T Consensus 117 ~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~~~~W~~~~~~~l~~~~~~vV~~R~g~~~~~~~~~~~~l~~~~~~i~~~~~ 196 (236)
T PLN02945 117 TSLNNNGLASEESVRVMLLCGSDLLESFSTPGVWIPDQVRTICRDYGVVCIRREGQDVEKLVSQDEILNENRGNILVVDD 196 (236)
T ss_pred HHhccccccCCCCceEEEEechhHHHhcCCCCcCCHHHHHHHHHhCCEEEEeCCCCCHHHHhhcchhhhhCcCCEEEecc
Confidence 99962111111225899999999999999998899875566999999999999998754322111223333346777743
Q ss_pred CCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCC
Q 028685 161 LVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYL 200 (205)
Q Consensus 161 ~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~ 200 (205)
.+..+||||+||+++++|+++.++||++|.+||++|+||.
T Consensus 197 ~~~~~ISST~IR~~l~~g~~i~~lvP~~V~~YI~~~~LY~ 236 (236)
T PLN02945 197 LVPNSISSTRVRECISRGLSVKYLTPDGVIDYIKEHGLYM 236 (236)
T ss_pred cccccccHHHHHHHHHcCCCchhhCCHHHHHHHHHcCCCC
Confidence 3457899999999999999999999999999999999995
No 2
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=100.00 E-value=5e-48 Score=305.92 Aligned_cols=179 Identities=28% Similarity=0.434 Sum_probs=155.3
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC--CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSR 78 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~--~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~ 78 (205)
||+.+|+.|++.+++|+|++| |++.+|+|+ ..+++++|++|+++|+++++++.|+++|++++++|||++||++
T Consensus 12 GHl~l~~~a~~~~~~d~v~~~-----p~~~~p~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~syT~~tl~~ 86 (193)
T TIGR00482 12 GHLLLAEEALDHLDLDKVIFV-----PTANPPHKKTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGPSYTIDTLKH 86 (193)
T ss_pred HHHHHHHHHHHHcCCCEEEEE-----eCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCCCCHHHHHHH
Confidence 899999999999999999987 455666775 4689999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHh-hhhhhhhhcCCcEEE
Q 028685 79 VKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKII-SDNEILDKNKGNIKL 157 (205)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~-~~~~~l~~~~~~i~~ 157 (205)
|+++||+ .+++||||+|++.+|++|++| ++|++.|+|+|++|+|++..... .....+ ....++++
T Consensus 87 l~~~~p~--------~~~~~iiG~D~l~~l~~W~~~-----~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~-~~~~~i~~ 152 (193)
T TIGR00482 87 LKKKYPD--------VELYFIIGADALRSFPLWKDW-----QELLELVHLVIVPRPGYTLDKALLEKAILR-MHHGNLTL 152 (193)
T ss_pred HHHHCCC--------CeEEEEEcHHHhhhhccccCH-----HHHHHhCcEEEEeCCCCCcchhhhHHHHhc-ccCCcEEE
Confidence 9999986 389999999999999987777 99999999999999997643210 100001 12346888
Q ss_pred EcCCCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCC
Q 028685 158 VDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 199 (205)
Q Consensus 158 ~~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY 199 (205)
++ .+..+||||+||+++++|+++.++||++|.+||++|+||
T Consensus 153 ~~-~~~~~iSST~IR~~l~~g~~~~~lvP~~V~~YI~~~~LY 193 (193)
T TIGR00482 153 LH-NPRVPISSTEIRQRIRQGKSIEYLLPDPVIKYIKQHGLY 193 (193)
T ss_pred Ec-CCccccCHHHHHHHHHcCCCchhhCCHHHHHHHHHhCCC
Confidence 86 677999999999999999999999999999999999999
No 3
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=4.7e-48 Score=314.41 Aligned_cols=183 Identities=22% Similarity=0.283 Sum_probs=154.0
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCC----CCeeeChhhhcCCCccchHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS----DFIMVDPWEANQSGYQRTLTVL 76 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~----~~~~v~~~E~~~~~~syT~dtl 76 (205)
||+.+|+.|.+.+++|+|+|| |++++|+|+..+++++|++|+++|+++. ++|+|+++|++++|+|||++||
T Consensus 37 GHl~ia~~~~~~l~ld~v~~i-----P~~~pp~K~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~~~Ei~~~g~syTidTL 111 (243)
T PRK06973 37 GHLALARRFADVLDLTELVLI-----PAGQPWQKADVSAAEHRLAMTRAAAASLVLPGVTVRVATDEIEHAGPTYTVDTL 111 (243)
T ss_pred HHHHHHHHHHHHcCCCEEEEE-----ECCcCCCCCCCCCHHHHHHHHHHHHHhccCCCceEEEeHhhhhCCCCCcHHHHH
Confidence 899999999999999999987 5667778877899999999999999964 4799999999999999999999
Q ss_pred HHHHHHh-hhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHh---h--------h
Q 028685 77 SRVKNFL-IEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKII---S--------D 144 (205)
Q Consensus 77 ~~l~~~~-~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~---~--------~ 144 (205)
++|+++| |+ .++|||||+|++.+|++|++| ++|++.|+|+|+.|+|++..... . .
T Consensus 112 ~~l~~~~~p~--------~~~~fiiG~D~l~~l~~W~~~-----~~L~~~~~lvV~~R~g~~~~~~~~~~~~~l~~~~~~ 178 (243)
T PRK06973 112 ARWRERIGPD--------ASLALLIGADQLVRLDTWRDW-----RRLFDYAHLCAATRPGFDLGAASPAVAAEIAARQAD 178 (243)
T ss_pred HHHHHHcCCC--------CCEEEEEchhhHhhcCCcccH-----HHHHHhCCEEEEECCCCCcccchhHHHHHHhhhhhh
Confidence 9999999 65 389999999999999988777 99999999999999997532110 0 0
Q ss_pred hhhhhhcCCcEEEEcCCCCCccchHHHHHHHHcC--------CCCCccChHHHHHHHHhCCCCCC
Q 028685 145 NEILDKNKGNIKLVDELVPNQISSTRIRDCICRG--------LSIKYLTEDKVIDYIRESRLYLN 201 (205)
Q Consensus 145 ~~~l~~~~~~i~~~~~~~~~~ISST~IR~~~~~g--------~~i~~~vp~~V~~yI~~~~LY~~ 201 (205)
...+.....+.+++...+..+||||+||+++++| +++.++||++|++||++|+||+.
T Consensus 179 ~~~l~~~~~g~~~~~~~~~~~ISST~IR~~l~~g~~~~~~~~~~i~~lvP~~V~~YI~~~~LY~~ 243 (243)
T PRK06973 179 ADVLQATPAGHLLIDTTLAFDLSATDIRAHLRACIARRAQVPDASAEHVPAAVWAYILQHRLYHR 243 (243)
T ss_pred hhhhhcCCCceEEEcCCCcccccHHHHHHHHHcCCCcccccCCChhHhCCHHHHHHHHHcCCCCC
Confidence 1112222223444443567899999999999999 99999999999999999999963
No 4
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=100.00 E-value=5.6e-47 Score=305.71 Aligned_cols=197 Identities=49% Similarity=0.879 Sum_probs=166.4
Q ss_pred CcHHHHHHHHHHhccCC-eEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEG-YCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRV 79 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~-v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l 79 (205)
||+.+|+.|++.+++++ +.++|++++|++++|+|+..+++++|++|+++|++++++++|+++|+.+++++||++||+++
T Consensus 15 gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~~~~~~v~~~E~~~~~~syT~~TL~~l 94 (225)
T cd09286 15 MHLRMFELARDHLHETGRYEVVGGIISPVNDAYGKKGLASAKHRVAMCRLAVQSSDWIRVDDWESLQPEWMRTAKVLRHH 94 (225)
T ss_pred HHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCCCCCCCHHHHHHHHHHHHccCCCEEEEehhccCCccccHHHHHHHH
Confidence 89999999999999987 77888889999999999888999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcccc-------------CCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhh
Q 028685 80 KNFLIEAGLIS-------------TESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNE 146 (205)
Q Consensus 80 ~~~~~~~~~~~-------------~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~ 146 (205)
++.||+. +| .+..+++||||+|++.+|++|+.|++..+++|++.|+|+|+.|+|++........+
T Consensus 95 ~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~~~~W~~~~~e~ll~~~~~vv~~R~g~~~~~~~~~~~ 172 (225)
T cd09286 95 REEINNK--YGGIEGAAKRVLDGSRREVKIMLLCGADLLESFGIPGLWKDADLEEILGEFGLVVVERTGSDPENFIASSD 172 (225)
T ss_pred HHHhccc--ccccccccccccccccCCceEEEEecHhHHHhcCCCCcCCHHHHHHHHHhCCEEEEeCCCCCHHHhhhccc
Confidence 9999731 00 00148999999999999999888985223999999999999999986433221112
Q ss_pred hhhhcCCcEEEEcCCCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCC
Q 028685 147 ILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 199 (205)
Q Consensus 147 ~l~~~~~~i~~~~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY 199 (205)
.+.....++.+++..+..+||||+||+++++|+++.++||++|.+||++|+||
T Consensus 173 ~l~~~~~~i~~~~~~~~~~ISST~IR~~l~~g~~~~~llp~~V~~YI~~~~LY 225 (225)
T cd09286 173 ILRKYQDNIHLVKDWIPNDISSTKVRRALRRGMSVKYLLPDPVIEYIEQHQLY 225 (225)
T ss_pred hhHHhhCCEEEEecCcccccChHHHHHHHHcCCCchhcCCHHHHHHHHHcCCC
Confidence 23344457777752244599999999999999999999999999999999999
No 5
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=5.7e-47 Score=298.30 Aligned_cols=176 Identities=31% Similarity=0.389 Sum_probs=153.6
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC--CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSR 78 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~--~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~ 78 (205)
||+.+|+.|.+.+++|+|+++ |++.||+|+ ..+|.+||++|+++|+++++.++|+++|++++|+|||+|||++
T Consensus 18 GHl~ia~~~~~~l~ld~vi~~-----ps~~~p~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~~r~g~sYT~dTl~~ 92 (197)
T COG1057 18 GHLLIAEEALDQLGLDKVIFL-----PSPVPPHKKKKELASAEHRLAMLELAIEDNPRFEVSDREIKRGGPSYTIDTLEH 92 (197)
T ss_pred HHHHHHHHHHHhcCCCeEEEe-----cCCCCCCCCCccCCCHHHHHHHHHHHHhcCCCcceeHHHHHcCCCcchHHHHHH
Confidence 899999999999999999986 556666876 4899999999999999999999999999999999999999999
Q ss_pred HHHHh-hhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCC-hhhHhhhhhhhhhcCCcEE
Q 028685 79 VKNFL-IEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQD-VEKIISDNEILDKNKGNIK 156 (205)
Q Consensus 79 l~~~~-~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~-~~~~~~~~~~l~~~~~~i~ 156 (205)
+++++ |+ .++|||||+|++.+|++|++| ++|++.|+|+|++|+|+. .... +....+.+.
T Consensus 93 ~~~~~~p~--------~~~~fIiGaD~l~~l~~W~~~-----~ell~~~~~vv~~Rp~~~~~~~~------~~~~~~~~~ 153 (197)
T COG1057 93 LRQEYGPD--------VELYFIIGADNLASLPKWYDW-----DELLKLVTFVVAPRPGYGELELS------LLSSGGAII 153 (197)
T ss_pred HHHHhCCC--------CcEEEEEehHHhhhhhhhhhH-----HHHHHhCCEEEEecCCchhhhhh------hhcCCceEE
Confidence 99555 43 489999999999999988777 999999999999999984 2111 111123466
Q ss_pred EEcCCCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCCC
Q 028685 157 LVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLN 201 (205)
Q Consensus 157 ~~~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~~ 201 (205)
+++ .+..+||||.||++++.|+++.+++|++|.+||.+|+||+.
T Consensus 154 ~~~-~~~~~ISSt~IR~~~~~~~~~~~llP~~V~~YI~~~~LY~~ 197 (197)
T COG1057 154 LLD-LPRLDISSTEIRERIRRGASVDYLLPDSVLSYIEERGLYRG 197 (197)
T ss_pred Ecc-CccccCchHHHHHHHhCCCCchhcCCHHHHHHHHHhccccC
Confidence 665 68899999999999999999999999999999999999973
No 6
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=7e-46 Score=295.80 Aligned_cols=181 Identities=26% Similarity=0.344 Sum_probs=156.2
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC--CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSR 78 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~--~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~ 78 (205)
||+.|++.|++.+++|+++++| +..+|+|+ ..+++++|++|+++|+++.+++.|+++|+++++++||++||++
T Consensus 19 GH~~l~~~a~~~~~~d~v~~~p-----~~~~~~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~syT~~tl~~ 93 (203)
T PRK00071 19 GHLAIAEEAAERLGLDEVWFLP-----NPGPPHKPQKPLAPLEHRLAMLELAIADNPRFSVSDIELERPGPSYTIDTLRE 93 (203)
T ss_pred HHHHHHHHHHHHcCCCEEEEEe-----CCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceEEeHHHHhCCCCCCHHHHHHH
Confidence 8999999999999999999874 45556665 5899999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHh-hhhhhhhhcCCcEEE
Q 028685 79 VKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKII-SDNEILDKNKGNIKL 157 (205)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~-~~~~~l~~~~~~i~~ 157 (205)
|++.||+. +++||||+|++.+|++|++| ++|++.|+|+|++|+|....... .....+....+++.+
T Consensus 94 l~~~~p~~--------~~~fiiG~D~l~~l~~W~~~-----~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~i~~ 160 (203)
T PRK00071 94 LRARYPDV--------ELVFIIGADALAQLPRWKRW-----EEILDLVHFVVVPRPGYPLEALALPALQQLLEAAGAITL 160 (203)
T ss_pred HHHHCCCC--------cEEEEEcHHHhhhcccccCH-----HHHHHhCcEEEEeCCCCCccccchhHHHHhhccCCCEEE
Confidence 99999863 89999999999999987766 99999999999999997642211 000112112457888
Q ss_pred EcCCCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCC
Q 028685 158 VDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYL 200 (205)
Q Consensus 158 ~~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~ 200 (205)
++ .+..+||||+||+++++|+++.++||++|.+||++|+||+
T Consensus 161 ~~-~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~YI~~~~LY~ 202 (203)
T PRK00071 161 LD-VPLLAISSTAIRERIKEGRPIRYLLPEAVLDYIEKHGLYR 202 (203)
T ss_pred Ee-CCCCccCHHHHHHHHHcCCChhHhCCHHHHHHHHHhCccC
Confidence 86 6789999999999999999999999999999999999996
No 7
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=100.00 E-value=5.9e-43 Score=276.74 Aligned_cols=178 Identities=27% Similarity=0.307 Sum_probs=153.9
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC-CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRV 79 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~-~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l 79 (205)
||+.+++.|.+.+++|+|+++| +.++++|+ ..+++++|++|+++++++.+++.|+++|+++++++||++||+++
T Consensus 14 GH~~~~~~a~~~~~~d~v~~~~-----~~~~~~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~~~~t~~tl~~l 88 (192)
T cd02165 14 GHLAIAEEALEELGLDRVLLLP-----SANPPHKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDGPSYTIDTLEEL 88 (192)
T ss_pred HHHHHHHHHHHHcCCCEEEEEe-----CCCCCCCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCCCCCHHHHHHHH
Confidence 8999999999999999999874 55566675 68999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEc
Q 028685 80 KNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVD 159 (205)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~ 159 (205)
++.||+ .+++||||+|++.+|++|++| ++|++.++|+|+.|+|++....... .......++.+++
T Consensus 89 ~~~~p~--------~~~~~liG~D~l~~~~~W~~~-----~~i~~~~~~iv~~R~g~~~~~~~~~--~~~~~~~~~~~~~ 153 (192)
T cd02165 89 RERYPN--------AELYFIIGSDNLIRLPKWYDW-----EELLSLVHLVVAPRPGYPIEDASLE--KLLLPGGRIILLD 153 (192)
T ss_pred HHhccC--------CCEEEEEcHHHhhhcccccCH-----HHHHHhCcEEEEeCCCCCcccchhh--hhccCCCcEEEec
Confidence 999986 389999999999999976666 8999999999999998754321110 0111234677775
Q ss_pred CCCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCC
Q 028685 160 ELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 199 (205)
Q Consensus 160 ~~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY 199 (205)
.+..+||||+||+++++|+++.++||++|.+||++|+||
T Consensus 154 -~~~~~iSST~IR~~~~~g~~~~~lvp~~V~~yI~~~~lY 192 (192)
T cd02165 154 -NPLLNISSTEIRERLKNGKSIRYLLPPAVADYIKEHGLY 192 (192)
T ss_pred -CCccccCHHHHHHHHHcCCChhHhCCHHHHHHHHHccCC
Confidence 577899999999999999999999999999999999999
No 8
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=100.00 E-value=3.3e-42 Score=294.30 Aligned_cols=169 Identities=27% Similarity=0.298 Sum_probs=148.2
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC-CCCC-HHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-GLIS-AEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSR 78 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~-~~~~-~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~ 78 (205)
||+.+|+.|++.+++|+|+|| |++.||+|+ ..++ +++|++|+++|++++|++.|+++|+++++++||++||++
T Consensus 16 GHl~la~~a~~~~~~d~v~~~-----p~~~~p~K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~syt~~tl~~ 90 (342)
T PRK07152 16 GHINIAKKAIKKLKLDKLFFV-----PTYINPFKKKQKASNGEHRLNMLKLALKNLPKMEVSDFEIKRQNVSYTIDTIKY 90 (342)
T ss_pred HHHHHHHHHHHHhCCCEEEEE-----eCCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHhCCCCCcHHHHHHH
Confidence 899999999999999999987 566677886 3444 599999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEE
Q 028685 79 VKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLV 158 (205)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~ 158 (205)
|+++||+. +++||||+|++.+|++|++| ++|++.|+|+|++|+|+..... +. ..+++++
T Consensus 91 l~~~~p~~--------~~~~iiG~D~~~~l~~W~~~-----~~l~~~~~~iv~~R~g~~~~~~------~~--~~~i~~~ 149 (342)
T PRK07152 91 FKKKYPND--------EIYFIIGSDNLEKFKKWKNI-----EEILKKVQIVVFKRKKNINKKN------LK--KYNVLLL 149 (342)
T ss_pred HHHhCCCC--------cEEEEecHHHhhhcccccCH-----HHHHHhCCEEEEECCCCCcccc------cc--cCcEEEe
Confidence 99999863 89999999999999987777 9999999999999998753211 11 1368888
Q ss_pred cCCCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCCC
Q 028685 159 DELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLN 201 (205)
Q Consensus 159 ~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~~ 201 (205)
+ .+..+||||+||+++++|+ ||++|.+||++|+||..
T Consensus 150 ~-~~~~~iSST~IR~~~~~~~-----vP~~V~~YI~~~~LY~e 186 (342)
T PRK07152 150 K-NKNLNISSTKIRKGNLLGK-----LDPKVNDYINENFLYLE 186 (342)
T ss_pred c-CCccccCHHHHHHHHHcCC-----CCHHHHHHHHHcCcccc
Confidence 6 6779999999999999886 99999999999999964
No 9
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=9.3e-42 Score=265.52 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=134.4
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCC--CCeeeChhhhcC---CCccchHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS--DFIMVDPWEANQ---SGYQRTLTV 75 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~--~~~~v~~~E~~~---~~~syT~dt 75 (205)
||+.+|+++ .++|+|+|+| +.++|.|+..+++++|++|+++|+++. ++++|+++|+++ ++++||++|
T Consensus 17 GHl~ia~~~---~~~d~v~~vP-----~~~~~~~k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~~~~~~~~~~yT~~t 88 (174)
T PRK08887 17 GHKSVIESL---SHFDLVLLVP-----SIAHAWGKTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQELYAPDESVTTYAL 88 (174)
T ss_pred HHHHHHHHh---hcCCEEEEEE-----CCCCcccCCCCCHHHHHHHHHHHHhccCCCceEEehHHhhhccCCCCcchHHH
Confidence 899999984 3679999975 443333447789999999999999985 799999999988 789999999
Q ss_pred HHHHHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcE
Q 028685 76 LSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNI 155 (205)
Q Consensus 76 l~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i 155 (205)
|++|+++||+. +++||||+|++.+|++|++| ++|++.|+|+|++|
T Consensus 89 l~~l~~~~p~~--------~~~~iiG~D~l~~l~~W~~~-----~~i~~~~~l~~~~~---------------------- 133 (174)
T PRK08887 89 LTRLQELYPEA--------DLTFVIGPDNFLKFAKFYKA-----DEITQRWTVMACPE---------------------- 133 (174)
T ss_pred HHHHHHHCCCC--------eEEEEEccchHHHHHHhCCH-----HHHHhhCeEEEeCC----------------------
Confidence 99999999863 89999999999999987777 89999999988754
Q ss_pred EEEcCCCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCCCCC
Q 028685 156 KLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNSN 203 (205)
Q Consensus 156 ~~~~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~~~~ 203 (205)
..+||||+||++++.|+++.++||++|.+||++|+||++++
T Consensus 134 -------~~~ISST~IR~~l~~g~~i~~lvp~~V~~yI~~~~LY~~~~ 174 (174)
T PRK08887 134 -------KVPIRSTDIRNALQNGKDISHLTTPGVARLLKEHQLYTEPS 174 (174)
T ss_pred -------CCCcCHHHHHHHHHcCCChhHhCCHHHHHHHHHccccCCCC
Confidence 13699999999999999999999999999999999998764
No 10
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.3e-35 Score=225.44 Aligned_cols=202 Identities=48% Similarity=0.847 Sum_probs=172.2
Q ss_pred CcHHHHHHHHHHh-ccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHH
Q 028685 1 MHLRMFELARDTL-NSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRV 79 (205)
Q Consensus 1 gHl~ia~~a~~~~-~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l 79 (205)
+||.|++.|+..+ +-.+..||.++++|+++.++|+.+++..||+.|+++|++...++.+|+||..|+..+-|++.|+|.
T Consensus 23 ~HLrmfElAkd~l~~t~~~~Vv~GimSPV~DaYkKKgLipa~hrv~~~ElAt~~Skwl~vD~weslQ~~wt~T~~vlrHh 102 (234)
T KOG3199|consen 23 LHLRMFELAKDYLNETGRYRVVKGIMSPVGDAYKKKGLIPAYHRVRMVELATETSKWLMVDGWESLQKEWTRTVKVLRHH 102 (234)
T ss_pred HHHHHHHHHHHHHhccCCeEEEeeEecccchhhhccccchhhhHHHHHHhhhccccceecchhhhccHHHhhhhHHHHHH
Confidence 5999999999999 567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhh----cccc--CCCceEEEEEccchhhcCCCCCC-CChhhHHHHhhcccEEEEeCCCCChhhHhhhhh-hhhhc
Q 028685 80 KNFLIEA----GLIS--TESLKVMLVCGSDLLESFAIPGF-WMPEQVWTICRNFGVICIRREGQDVEKIISDNE-ILDKN 151 (205)
Q Consensus 80 ~~~~~~~----~~~~--~~~~~~~fiiG~D~~~~l~~w~~-W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~-~l~~~ 151 (205)
++..... ..+| -.+....+++|.|.+.+|..+.- |+..++..++..++++|+.|.|.+...++...+ .+...
T Consensus 103 qe~~~~kr~~~~~~~~~k~~~kVmLlcG~Dliesf~~p~~~w~~~dl~~i~~~yGl~cv~r~gsD~~~~i~~~d~i~~~~ 182 (234)
T KOG3199|consen 103 QEELNRKRGGTELSPGTKSDVKVMLLCGGDLIESFGEPNLVWKDEDLRTILGEYGLVCVTREGSDVENFLSSHDIILEKR 182 (234)
T ss_pred HHHHHHHhccccccccccCCceEEEEeCchHHHhccCCCCCcchhhHHHHHhhCcEEEEeccCCCHHHHHhccHHHHHhh
Confidence 8744221 0111 12468999999999999998865 887778899999999999999999888776644 34434
Q ss_pred CCcEEEEcCCCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCCCC
Q 028685 152 KGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNS 202 (205)
Q Consensus 152 ~~~i~~~~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~~~ 202 (205)
...+.+.++...++||||.||+++++|+++++++|+.|++||++|+||...
T Consensus 183 ~~~l~ikn~~~~N~ISStklr~ai~r~~SVkYl~PD~Vi~yI~~h~LY~~~ 233 (234)
T KOG3199|consen 183 RNILHIKNEIVPNDISSTKLRQAIRRGQSVKYLTPDSVIEYIREHNLYSSE 233 (234)
T ss_pred cceEEEeeeeecCCcchHHHHHHHHcCCeeEeeCcHHHHHHHHHhhchhcc
Confidence 445555554445899999999999999999999999999999999999863
No 11
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.95 E-value=3.2e-28 Score=186.29 Aligned_cols=140 Identities=16% Similarity=0.116 Sum_probs=111.9
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||+.+|+.|.+.+ |+|+++| + .+|+|+..++.++|++|+++|++++|+++|+++| +||+||+++++
T Consensus 14 GHl~l~~~a~~~~--d~v~~~~-----~-~~p~k~~~~~~~~R~~m~~~a~~~~~~~~v~~~e------~yt~dt~~~l~ 79 (155)
T TIGR01510 14 GHLDIIKRAAALF--DEVIVAV-----A-KNPSKKPLFSLEERVELIKDATKHLPNVRVDVFD------GLLVDYAKELG 79 (155)
T ss_pred HHHHHHHHHHHhC--CEEEEEE-----c-CCCCCCCCcCHHHHHHHHHHHHhhCCCeEEcCcc------chHHHHHHHcC
Confidence 8999999999997 9999874 3 3467778899999999999999999999999999 59999999886
Q ss_pred HHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcC
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE 160 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~ 160 (205)
. .+||+|.|++. .| +++++.+. ++|.... ....++++.
T Consensus 80 ~--------------~~~i~G~~~~~------~~-----~~~~~~~~---~~r~~~~-------------~~~~i~~~~- 117 (155)
T TIGR01510 80 A--------------TFIVRGLRAAT------DF-----EYELQMAL---MNKHLAP-------------EIETVFLMA- 117 (155)
T ss_pred C--------------CEEEecCcchh------hH-----HHHHHHHh---hCccccc-------------CCcEEEEeC-
Confidence 2 25788887653 45 56676666 4552100 112466655
Q ss_pred CCC-CccchHHHHHHHHcCCCCCccChHHHHHHHHhC
Q 028685 161 LVP-NQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 196 (205)
Q Consensus 161 ~~~-~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~ 196 (205)
.+. .+||||.||++++.|+++.++||++|.+||+++
T Consensus 118 ~~~~~~iSST~IR~~i~~g~~~~~lvP~~V~~YI~~~ 154 (155)
T TIGR01510 118 SPEYAFVSSSLVKEIASFGGDVSNLVPPAVARRLKAK 154 (155)
T ss_pred CcchhhccHHHHHHHHHcCCChhHHCCHHHHHHHHHh
Confidence 344 499999999999999999999999999999985
No 12
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.94 E-value=3.7e-27 Score=180.02 Aligned_cols=139 Identities=18% Similarity=0.155 Sum_probs=112.3
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||+.++++|.+.+ |+++++| +.+ |+|+..++.++|++|+++|+++.|++.|+++| +||++|+++++
T Consensus 14 GHl~l~~~a~~~~--d~v~v~~-----~~~-~~k~~~~~~~~R~~ml~~a~~~~~~~~v~~~e------s~t~~~l~~l~ 79 (153)
T cd02163 14 GHLDIIERASKLF--DEVIVAV-----AVN-PSKKPLFSLEERVELIREATKHLPNVEVDGFD------GLLVDFARKHG 79 (153)
T ss_pred HHHHHHHHHHHHC--CEEEEEE-----cCC-CCCCCCCCHHHHHHHHHHHHcCCCCEEecCCc------chHHHHHHHcC
Confidence 8999999999987 9999875 332 35767899999999999999999999999986 79999999775
Q ss_pred HHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcC
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE 160 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~ 160 (205)
. + +|++|.|++.+ | ++++ ++++++|++... ...+++++
T Consensus 80 ~-------------~-~~i~G~d~~~~------~-----e~~~---~~~~~~r~~~~~-------------~~~i~~~~- 117 (153)
T cd02163 80 A-------------N-VIVRGLRAVSD------F-----EYEF---QMAGMNRKLAPE-------------IETVFLMA- 117 (153)
T ss_pred C-------------C-EEEECCcchhh------H-----HHHH---HHHHhCCCCCCC-------------CcEEEEeC-
Confidence 3 2 58999998755 4 3443 555688987321 12466665
Q ss_pred CCC-CccchHHHHHHHHcCCCCCccChHHHHHHHHh
Q 028685 161 LVP-NQISSTRIRDCICRGLSIKYLTEDKVIDYIRE 195 (205)
Q Consensus 161 ~~~-~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~ 195 (205)
.+. .+||||+||++++.|+++.++||++|.+||++
T Consensus 118 ~~~~~~iSST~IR~~~~~g~~i~~lvP~~V~~yI~~ 153 (153)
T cd02163 118 SPEYSFISSSLVKEIARFGGDVSGFVPPVVAKALKE 153 (153)
T ss_pred CCccceecHHHHHHHHHcCCChhHhCCHHHHHHHhC
Confidence 455 46999999999999999999999999999975
No 13
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.94 E-value=3.3e-26 Score=175.83 Aligned_cols=140 Identities=18% Similarity=0.130 Sum_probs=112.4
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||+.++++|.+.+ |+|+++| +. +|+|+..+++++|++|+++|+++.+++.|+++| +||++|+++++
T Consensus 16 GHl~~~~~a~~~~--d~v~v~~-----~~-~~~k~~~~~~~~R~~ml~~a~~~~~~v~v~~~e------~~t~~~~~~~~ 81 (159)
T PRK00168 16 GHLDIIERASRLF--DEVIVAV-----AI-NPSKKPLFSLEERVELIREATAHLPNVEVVSFD------GLLVDFAREVG 81 (159)
T ss_pred HHHHHHHHHHHHC--CEEEEEE-----CC-CCCCCCCCCHHHHHHHHHHHHcCCCCEEEecCC------ccHHHHHHHcC
Confidence 8999999999997 9999863 33 346777899999999999999999999999987 69999987664
Q ss_pred HHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcC
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE 160 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~ 160 (205)
. -+|+.|.|+ |+.| +.+++.+. ++|++.+. .+.++++.
T Consensus 82 ~--------------~~~~~gl~~------w~d~-----e~~~~~~~---~~r~~~~~-------------~~~i~~~~- 119 (159)
T PRK00168 82 A--------------TVIVRGLRA------VSDF-----EYEFQMAG---MNRKLAPE-------------IETVFLMP- 119 (159)
T ss_pred C--------------CEEEecCcc------hhhH-----HHHHHHHH---hCCCCCCC-------------CcEEEEeC-
Confidence 2 257888774 4456 66655554 88886431 13566665
Q ss_pred CCC-CccchHHHHHHHHcCCCCCccChHHHHHHHHhC
Q 028685 161 LVP-NQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 196 (205)
Q Consensus 161 ~~~-~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~ 196 (205)
.+. .+||||.||++++.|++++++||++|.+||+++
T Consensus 120 ~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yI~~~ 156 (159)
T PRK00168 120 SPEYSFISSSLVKEVARLGGDVSGFVPPAVAKALKEK 156 (159)
T ss_pred CCCcceecHHHHHHHHHcCCChhHHCCHHHHHHHHHH
Confidence 344 689999999999999999999999999999986
No 14
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.89 E-value=8.7e-24 Score=160.18 Aligned_cols=144 Identities=33% Similarity=0.447 Sum_probs=110.6
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC--CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSR 78 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~--~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~ 78 (205)
||+.+++.|.+.++.+.++++|+..+| +|. ..++.++|++|++.++.+.+++.|++||..++
T Consensus 12 GH~~~l~~a~~~~~~~~vi~v~~~~~~-----~k~~~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~----------- 75 (157)
T PF01467_consen 12 GHLNLLREARELFDEDLVIVVPSDNSP-----HKDKKPIFSFEERLEMLRAAFKDDPNIEVDDWELEQD----------- 75 (157)
T ss_dssp HHHHHHHHHHHHSSESEEEEEEEEHHC-----HSTTSSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSS-----------
T ss_pred HHHHHHHHHHHhccccccccccccccc-----cccccccCcHHHHHHHHHHHHhhcCCccccchhHHhH-----------
Confidence 899999999999988778888766555 553 58999999999999999999999999999876
Q ss_pred HHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEE
Q 028685 79 VKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLV 158 (205)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~ 158 (205)
++.+++ .+++|++|+|++.+|..|+.| ++++..++++|+.|++............+......+.++
T Consensus 76 -~~~~~~--------~~~~~v~g~D~~~~~~~~~~~-----~~~~~~~~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (157)
T PF01467_consen 76 -KKKYPD--------VKIYFVIGADNLRNFPKWRDW-----QEILKEVNIIVVSRGGDDPIETISDDEILEKYPLGIIFI 141 (157)
T ss_dssp -HHHSTS--------SCEEEEEECTHHEEEEESTTH-----HHHHHHHHEEEEEHHHTTTHEEEEHCHHHHHTTCEEEEE
T ss_pred -hhhccc--------cccceeccCCceeeecCCCcH-----HHHHHhCCEEEEEcCCCCccchhhhccccccccceeEEE
Confidence 567765 489999999999999965555 899999999999998654321111111222233334444
Q ss_pred cCCCCCccchHHHHHH
Q 028685 159 DELVPNQISSTRIRDC 174 (205)
Q Consensus 159 ~~~~~~~ISST~IR~~ 174 (205)
...+..+||||+||++
T Consensus 142 ~~~~~~~iSST~IR~~ 157 (157)
T PF01467_consen 142 LDPPRNEISSTEIRER 157 (157)
T ss_dssp EEGGGTTSSHHHHHHH
T ss_pred ecCCCCccCHHHHhcC
Confidence 3345578999999985
No 15
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.75 E-value=5.7e-18 Score=126.51 Aligned_cols=141 Identities=21% Similarity=0.200 Sum_probs=110.3
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||+.|+++|.+.+ |+|++. ...||.|++++|.++|++|++.++++.|+++|..++- .+.++.
T Consensus 17 GHlDii~RA~~~F--d~viVa------V~~np~K~plFsleER~~l~~~~~~~l~nV~V~~f~~----------Llvd~a 78 (159)
T COG0669 17 GHLDIIKRASALF--DEVIVA------VAINPSKKPLFSLEERVELIREATKHLPNVEVVGFSG----------LLVDYA 78 (159)
T ss_pred chHHHHHHHHHhc--cEEEEE------EEeCCCcCCCcCHHHHHHHHHHHhcCCCceEEEeccc----------HHHHHH
Confidence 9999999999999 898874 4566789999999999999999999999999997762 333333
Q ss_pred HHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcC
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE 160 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~ 160 (205)
++.. .-.+|.|..+..+|+ | |--+. -++|. |...-+++++...
T Consensus 79 k~~~----------a~~ivRGLR~~sDfe----Y-----E~qma-----~~N~~-------------L~~eveTvFl~~s 121 (159)
T COG0669 79 KKLG----------ATVLVRGLRAVSDFE----Y-----ELQMA-----HMNRK-------------LAPEVETVFLMPS 121 (159)
T ss_pred HHcC----------CCEEEEeccccchHH----H-----HHHHH-----HHHHh-------------hcccccEEEecCC
Confidence 3332 358999999999999 6 42222 13332 2112368888864
Q ss_pred CCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhC
Q 028685 161 LVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 196 (205)
Q Consensus 161 ~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~ 196 (205)
.....||||.+|+....|.+++.+||+.|..-+++.
T Consensus 122 ~~~~~iSSs~Vreia~~ggdvs~~VP~~V~~~l~~k 157 (159)
T COG0669 122 PEYSFISSSLVREIAAFGGDVSEFVPEAVARALRAK 157 (159)
T ss_pred cceehhhHHHHHHHHHhCCCchhhCCHHHHHHHHHh
Confidence 344899999999999999999999999999998764
No 16
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.55 E-value=3.8e-14 Score=110.95 Aligned_cols=144 Identities=15% Similarity=0.150 Sum_probs=84.3
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCC-CCcCCCCCCHHHHHHHHHHHHcCC----CCeeeChhhhcC-CCccchHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVND-AYKKRGLISAEHRINLCNLACKSS----DFIMVDPWEANQ-SGYQRTLT 74 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~-~~~K~~~~~~~~Rl~Ml~la~~~~----~~~~v~~~E~~~-~~~syT~d 74 (205)
||+.+++.|++.+ ++|++++ ++++ ++.|+..+++++|++|+++++.+. .++.+..++-.. ....+
T Consensus 14 GHl~~i~~a~~~~--~~vii~i----~s~~~~~~~~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~~~~~~~W--- 84 (181)
T cd02168 14 GHLAVVLIALEKA--KKVIILI----GSARTARNIKNPWTSEEREVMIEAALSDAGADLARVHFRPLRDHLYSDNLW--- 84 (181)
T ss_pred HHHHHHHHHHHHC--CeEEEEe----CCCCCCCCCCCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCCCCChHHH---
Confidence 8999999999998 6888863 3443 335567899999999999998874 234444433221 11111
Q ss_pred HHHHHHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCc
Q 028685 75 VLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGN 154 (205)
Q Consensus 75 tl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~ 154 (205)
+.++++.-|.. . +.+.++. ++|.|.=.+ . .| .+++. .
T Consensus 85 -~~~v~~~v~~~--~-~~~~~i~-~~g~~kd~~-~---~~-----~~lfp-----------------------------e 121 (181)
T cd02168 85 -LAEVQQQVLEI--A-GGSASVG-LVGHRKDAS-S---YY-----LRSFP-----------------------------Q 121 (181)
T ss_pred -HHHHHHhChHh--h-CCCCcEE-EeCCccCCC-c---cc-----eeecC-----------------------------C
Confidence 12222111110 0 0012333 336443111 0 01 11111 1
Q ss_pred EEEEcCCCCC-ccchHHHHHHHHc--CCCCCccChHHHHHHHHhCC
Q 028685 155 IKLVDELVPN-QISSTRIRDCICR--GLSIKYLTEDKVIDYIRESR 197 (205)
Q Consensus 155 i~~~~~~~~~-~ISST~IR~~~~~--g~~i~~~vp~~V~~yI~~~~ 197 (205)
+.+++ .+.. +||||.||+++.. |.++.++||++|.+||++.+
T Consensus 122 ~~~~~-~p~~~~iSsT~IR~~i~~~~g~~~~~lvP~~V~~~I~~~~ 166 (181)
T cd02168 122 WDYLE-VPNYPDLNATDIRRAYFEGKEAMYRAALPAGVYDFLTAFQ 166 (181)
T ss_pred cCeec-CccccccCHHHHHHHHHhcCCCChhHhCCHHHHHHHHHhC
Confidence 11222 2333 7999999999999 67999999999999999864
No 17
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.53 E-value=1.7e-13 Score=105.60 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=85.6
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC-CCCCHHHHHHHHHHHHcCCC----CeeeChhhhcCCCccchHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-GLISAEHRINLCNLACKSSD----FIMVDPWEANQSGYQRTLTV 75 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~-~~~~~~~Rl~Ml~la~~~~~----~~~v~~~E~~~~~~syT~dt 75 (205)
||+.+++.|++.+ |+++++ +|++++++|. ..+++++|++|+++++++.. ++.+...+
T Consensus 14 GHl~~i~~a~~~~--d~l~v~----v~s~~~~~~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~------------ 75 (163)
T cd02166 14 GHLKVIKWILEEV--DELIIG----IGSAQESHTLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVP------------ 75 (163)
T ss_pred HHHHHHHHHHHHC--CEEEEE----ecCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecC------------
Confidence 8999999999997 999884 4677777765 57999999999999997642 33332221
Q ss_pred HHHHHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcE
Q 028685 76 LSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNI 155 (205)
Q Consensus 76 l~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i 155 (205)
|. ..|..|... ++..+..++++++.++-. ...+..++ +
T Consensus 76 ---------------------------d~----~~~~~w~~~-v~~~vp~~div~~g~~~~--------~~~f~~~g--~ 113 (163)
T cd02166 76 ---------------------------DI----ERNSLWVSY-VESLTPPFDVVYSGNPLV--------ARLFKEAG--Y 113 (163)
T ss_pred ---------------------------CC----CchHHHHHH-HHHHCCCCCEEEECchHH--------HHhhhhcC--C
Confidence 11 111123211 122222334444433100 00112221 2
Q ss_pred EEEcCCCC---CccchHHHHHHHHcCCCCCccChHHHHHHHHhCCC
Q 028685 156 KLVDELVP---NQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRL 198 (205)
Q Consensus 156 ~~~~~~~~---~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~L 198 (205)
.+.. .+. ..||||.||+.+.+|+++..+||++|.+||.+.+.
T Consensus 114 ~v~~-~p~~~~~~~s~t~iR~~~~~~~~~~~~vp~~v~~~l~~~~~ 158 (163)
T cd02166 114 EVRR-PPMFNREEYSGTEIRRLMLGGEDWEELVPKSVAEVIKEIGG 158 (163)
T ss_pred eEec-CCcccCCCCCHHHHHHHHHcCCchhhcCCHHHHHHHHHcCC
Confidence 2221 222 35999999999999999999999999999998765
No 18
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.53 E-value=1.5e-13 Score=105.89 Aligned_cols=140 Identities=15% Similarity=0.138 Sum_probs=85.4
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC-CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHH-HHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTV-LSR 78 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~-~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dt-l~~ 78 (205)
||+.+++.|++.+ |+++++ +|++++++|. ..+++++|++|++.++++.+...+...-+ +.. ...+. ..+
T Consensus 14 GHl~ii~~a~~~~--D~lii~----i~s~~~~~k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~--~d~-~~~~~w~~~ 84 (165)
T TIGR01527 14 GHLEVIKKIAEEV--DELIIG----IGSAQESHTLENPFTAGERILMITQSLKEVGDLTYYIIPI--EDI-ERNSIWVSY 84 (165)
T ss_pred HHHHHHHHHHHHC--CEEEEE----EcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCceEEEEec--CCc-cHHHHHHHH
Confidence 8999999999996 999884 4667777775 67899999999999998765222111111 000 01111 122
Q ss_pred HHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEE
Q 028685 79 VKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLV 158 (205)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~ 158 (205)
++..-|. .+. +..|. + .| +++++..++- +..+
T Consensus 85 v~~~~p~--------~D~-vf~~~------~---~~-----~~~f~e~g~~-------------------------v~~~ 116 (165)
T TIGR01527 85 VESMTPP--------FDV-VYSNN------P---LV-----RRLFKEAGYE-------------------------VKRP 116 (165)
T ss_pred HHHhCCC--------CCE-EEECC------H---HH-----HHHHHHcCCE-------------------------EEEC
Confidence 2222121 222 22331 1 13 3444333221 2221
Q ss_pred cCCCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhCC
Q 028685 159 DELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESR 197 (205)
Q Consensus 159 ~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~ 197 (205)
.......+|||+||+.+.+|.+++.|||++|++||++-+
T Consensus 117 p~~~r~~~S~T~IR~~i~~~~~W~~lVP~~v~~~i~~i~ 155 (165)
T TIGR01527 117 PMFNRKEYSGTEIRRRMLNGEDWEHLVPKAVADVIKEIK 155 (165)
T ss_pred CCcCCCcccHHHHHHHHHcCCChhhhCCHHHHHHHHHcC
Confidence 101124789999999999999999999999999999864
No 19
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.51 E-value=8.7e-14 Score=104.18 Aligned_cols=125 Identities=16% Similarity=0.047 Sum_probs=90.3
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||+.+++.|.+.+ |+|+++| +. +|+|+..++.++|++|+++++++.|+++|..++- | .+++ ..+
T Consensus 16 GHl~ii~~A~~~~--D~v~v~v-----~~-np~K~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~---~--l~v~---~~~ 79 (140)
T PRK13964 16 GHLNILKKALKLF--DKVYVVV-----SI-NPDKSNASDLDSRFKNVKNKLKDFKNVEVLINEN---K--LTAE---IAK 79 (140)
T ss_pred HHHHHHHHHHHhC--CEEEEEe-----cc-CCCCCCCCCHHHHHHHHHHHHcCCCCcEEecCcC---C--cHHH---HHH
Confidence 8999999999997 9999874 32 3578788999999999999999999999876532 1 3333 333
Q ss_pred HHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcC
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE 160 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~ 160 (205)
++. .-+.|.|.++..+|+ | |.-+. .++|. +....++++++..
T Consensus 80 -~~~----------a~~ivrGlR~~~Dfe----y-----E~~~a-----~~n~~-------------l~~~ietvfl~~~ 121 (140)
T PRK13964 80 -KLG----------ANFLIRSARNNIDFQ----Y-----EIVLA-----AGNKS-------------LNNDLETILIIPD 121 (140)
T ss_pred -HCC----------CeEEEEecCCCccHH----H-----HHHHH-----HHHHh-------------hcCCCeEEEeecC
Confidence 332 359999999999998 6 32211 12332 2223367888864
Q ss_pred CCCCccchHHHHHHHHcCC
Q 028685 161 LVPNQISSTRIRDCICRGL 179 (205)
Q Consensus 161 ~~~~~ISST~IR~~~~~g~ 179 (205)
.....||||.||+..+.|+
T Consensus 122 ~~~~~iSSs~vre~~~~~~ 140 (140)
T PRK13964 122 YDKIEYSSTLLRHKKFLKK 140 (140)
T ss_pred CCCCEEeHHHHHHHHHccC
Confidence 4448999999999987663
No 20
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.47 E-value=3e-13 Score=101.07 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=89.3
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC---CCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLS 77 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K---~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~ 77 (205)
||+.++++|.+.. .|++++++ +.+++.+ +..++.++|++|++.+.++.. .+..++......+++.+.+.
T Consensus 14 GH~~ll~~a~~~~-~~~~~v~~-----~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~--~v~~~~~~~~~~~~~~~~~~ 85 (143)
T cd02039 14 GHLKLIKEALEEA-LDEVIIII-----VSNPPKKKRNKDPFSLHERVEMLKEILKDRL--KVVPVDFPEVKILLAVVFIL 85 (143)
T ss_pred HHHHHHHHHHHHc-CCceEEEE-----cCCChhhcccccCCCHHHHHHHHHHhccCCc--EEEEEecChhhccCHHHHHH
Confidence 8999999999988 67888764 3444433 368999999999999987333 44555555555677776666
Q ss_pred HHHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEE
Q 028685 78 RVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKL 157 (205)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~ 157 (205)
.+...++ ..++++|.|....+.. |++...+++...+.++++.|.+
T Consensus 86 ~~~~~~~----------~~~~v~G~d~~~~~~~---~~~~~~~~~~~~~~vv~~~~~~---------------------- 130 (143)
T cd02039 86 KILLKVG----------PDKVVVGEDFAFGKNA---SYNKDLKELFLDIEIVEVPRVR---------------------- 130 (143)
T ss_pred HHHHHcC----------CcEEEECCccccCCch---hhhHHHHHhCCceEEEeeEecC----------------------
Confidence 5555553 4699999999999995 5422225565566777777642
Q ss_pred EcCCCCCccchHHHHHH
Q 028685 158 VDELVPNQISSTRIRDC 174 (205)
Q Consensus 158 ~~~~~~~~ISST~IR~~ 174 (205)
....||||.||++
T Consensus 131 ----~~~~iSSt~IR~~ 143 (143)
T cd02039 131 ----DGKKISSTLIREL 143 (143)
T ss_pred ----CCcEEehHHhhcC
Confidence 1237899999973
No 21
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=99.46 E-value=1.5e-12 Score=112.45 Aligned_cols=160 Identities=16% Similarity=0.221 Sum_probs=116.4
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCC-----eeeChhhhcCCCccchHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDF-----IMVDPWEANQSGYQRTLTV 75 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~-----~~v~~~E~~~~~~syT~dt 75 (205)
||+.+++.|++.++.|+++++| ... |+|...++.+.|++|+++++++++. +.+.++|....|++ +|
T Consensus 198 ~H~~l~~~a~e~l~~d~lll~P-----~~g-~~k~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~em~~agpr---ea 268 (383)
T TIGR00339 198 AHEELTKRAARSLPNAGVLVHP-----LVG-LTKPGDIPAEVRMRAYEVLKEGYPNPERVMLTFLPLAMRYAGPR---EA 268 (383)
T ss_pred HHHHHHHHHHHHcCCCeEEEEe-----CCC-CCCCCCCCHHHHHHHHHHHHhhCCCCCceEEEecchHhhcCCcH---HH
Confidence 7999999999999889999875 444 5777899999999999999999876 89999999999988 99
Q ss_pred HHH--HHHHhhhhccccCCCceEEEEEccchhhcC------CCCCCCChhhHHHHhhccc----E--EEEeCCCCChhhH
Q 028685 76 LSR--VKNFLIEAGLISTESLKVMLVCGSDLLESF------AIPGFWMPEQVWTICRNFG----V--ICIRREGQDVEKI 141 (205)
Q Consensus 76 l~~--l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l------~~w~~W~~~~~e~l~~~~~----~--iv~~R~~~~~~~~ 141 (205)
+.+ +++.|+. . +||+|.|..--- . .|..++.++|++.+. + +.+.---|-
T Consensus 269 ll~Aiir~nyG~---------t-h~IiG~Dhag~g~~~~~~~---~Y~~~~aq~i~~~~~~~l~I~~v~~~~~~Yc---- 331 (383)
T TIGR00339 269 IWHAIIRKNYGA---------T-HFIVGRDHAGPGSNSKGQD---FYGPYDAQELFEKYKAELGIKIVPFEHVAYC---- 331 (383)
T ss_pred HHHHHHHHHCCC---------C-EEEECCCCCCCCCCCcccc---CCCcchHHHHHHhCccccCceEEecceeEEE----
Confidence 999 9999973 3 999999987543 2 243445588886531 1 111111000
Q ss_pred hhhhhhhhhcCCcEEEEcCC-----CCCccchHHHHHHHHcCCCC-CccChHHHHHHHH
Q 028685 142 ISDNEILDKNKGNIKLVDEL-----VPNQISSTRIRDCICRGLSI-KYLTEDKVIDYIR 194 (205)
Q Consensus 142 ~~~~~~l~~~~~~i~~~~~~-----~~~~ISST~IR~~~~~g~~i-~~~vp~~V~~yI~ 194 (205)
...+.+...+.. ....+|.|.||++++.|..+ ..++.++|.+-++
T Consensus 332 --------~~c~~~~~~~~cph~~~~~~~~sgt~ir~~L~~G~~pP~~f~rpeV~~~L~ 382 (383)
T TIGR00339 332 --------PDEDEYAPADQAGHTNLRTLNISGTKLRGMLREGVFPPEWFSRPEVVKILR 382 (383)
T ss_pred --------cccCcEeecccCCCCccceeeeCHHHHHHHHHCCCCCCCccCcHHHHHHHh
Confidence 001222222211 12479999999999999865 5688889987654
No 22
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.46 E-value=1.1e-12 Score=101.96 Aligned_cols=140 Identities=14% Similarity=0.200 Sum_probs=83.4
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC-CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRV 79 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~-~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l 79 (205)
||+.+++.|++. +|+|+++ ++++++++|. ..+++++|++|+++++.+... ..+
T Consensus 15 GHl~~i~~a~~~--~d~v~v~----i~s~~~~~~~~~p~~~~~R~~mi~~a~~~~~~-~~~------------------- 68 (174)
T PRK01153 15 GHLEVIKWILEE--VDELIIG----IGSAQESHTLKNPFTAGERILMIRKALEEEGI-DLS------------------- 68 (174)
T ss_pred HHHHHHHHHHHh--CCEEEEE----ecCCCCCCCCCCCCCHHHHHHHHHHHHhcCCC-Ccc-------------------
Confidence 899999999995 5999985 3566666654 579999999999999975431 100
Q ss_pred HHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEc
Q 028685 80 KNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVD 159 (205)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~ 159 (205)
++.++-..|.. .|..|..+ ++.....++++...= . .. ...+.++ ++..+.
T Consensus 69 ---------------~~~~~pi~D~~----~~~~w~~~-v~~~~~~~d~v~~~~---~---y~--~~~f~~~--g~~v~~ 118 (174)
T PRK01153 69 ---------------RYYIIPIPDIE----FNSIWVSH-VESYTPPFDVVYTGN---P---LV--ARLFREA--GYEVRQ 118 (174)
T ss_pred ---------------eeeEecCCCcc----hHHHHHHH-HHHhCCCCCEEEECC---h---HH--HHhchhh--CCeEec
Confidence 23333333321 12234221 122222223322221 0 00 0011111 222222
Q ss_pred CCC---CCccchHHHHHHHHcCCCCCccChHHHHHHHHhCC
Q 028685 160 ELV---PNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESR 197 (205)
Q Consensus 160 ~~~---~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~ 197 (205)
.+ ...||||+||+++.+|++++.+||++|.+||.+-+
T Consensus 119 -~p~~~~~~iSsT~IR~~i~~g~~w~~~VPp~V~~~i~~~~ 158 (174)
T PRK01153 119 -PPMFNREEYSGTEIRRRMIEGDPWEELVPKSVAEVIKEID 158 (174)
T ss_pred -CCccccCCCCHHHHHHHHHcCCchhhhCCHHHHHHHHHhC
Confidence 12 23799999999999999999999999999998764
No 23
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=99.41 E-value=3.3e-12 Score=100.03 Aligned_cols=50 Identities=22% Similarity=0.195 Sum_probs=43.1
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeC
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVD 60 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~ 60 (205)
||+.+++.|.+.++++.|+++| + ++..+++++|++|+++|++++++++|.
T Consensus 14 GHl~i~~~a~~~~d~~~V~v~p-----~-----~~~~~s~e~R~~Mi~~a~~~~~~v~v~ 63 (182)
T smart00764 14 GHRYLVEQAAAECDWVHLFVVS-----E-----DASLFSFDERFALVKKGTKDLDNVTVH 63 (182)
T ss_pred HHHHHHHHHHHHCCceEEEEEe-----C-----CCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 8999999999999888888764 3 345789999999999999999987764
No 24
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.39 E-value=1e-12 Score=110.20 Aligned_cols=157 Identities=13% Similarity=0.052 Sum_probs=97.0
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||+.+++.|.+.++++.|+++ |+ ++..+|+++|++|++++++++|+++|..++- ++++.+
T Consensus 129 GHl~ii~~a~~~~d~~~V~i~-----~~-----~~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~------l~v~~~---- 188 (297)
T cd02169 129 GHRYLVEKAAAENDWVHLFVV-----SE-----DKSLFSFADRFKLVKKGTKHLKNVTVHSGGD------YIISSA---- 188 (297)
T ss_pred HHHHHHHHHHhhCCeEEEEEE-----cC-----CCCCCCHHHHHHHHHHHhCCCCCEEEEecCC------eeeccc----
Confidence 899999999999988888875 32 3457899999999999999999998887662 444442
Q ss_pred HHhhhhccccCCCceEEEEEccchhhc-CCCCCCCChhh-HHHHh-h--cccEEEEe---CCCCChhhHhhhhhhhhhcC
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDLLES-FAIPGFWMPEQ-VWTIC-R--NFGVICIR---REGQDVEKIISDNEILDKNK 152 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~~~~-l~~w~~W~~~~-~e~l~-~--~~~~iv~~---R~~~~~~~~~~~~~~l~~~~ 152 (205)
.||. |||--.|.... |. +...-+ ++ ++ + .+.-+|+. |-|............-.+..
T Consensus 189 -~~~~-----------~~~~~~~~~~~~~a---~lsa~~Fi~-iL~~~l~~~~ivvG~Df~FG~~r~G~~~l~~~~~~~g 252 (297)
T cd02169 189 -TFPS-----------YFIKEQDVVIKAQT---ALDARIFRK-YIAPALNITKRYVGEEPFSRVTAIYNQTMQEELLSPA 252 (297)
T ss_pred -cChh-----------hhcCChhHHHHHHh---cCCHHHHHH-HHHHHcCCcEEEEcCCCCCCCcchhHHHHHHhcccCC
Confidence 3553 77777765432 22 222211 12 33 2 23444443 22221110000000011112
Q ss_pred CcEEEEcCC--CCCccchHHHHHHHHcCC--CCCccChHHHHHHH
Q 028685 153 GNIKLVDEL--VPNQISSTRIRDCICRGL--SIKYLTEDKVIDYI 193 (205)
Q Consensus 153 ~~i~~~~~~--~~~~ISST~IR~~~~~g~--~i~~~vp~~V~~yI 193 (205)
-.+..++.. ....||||.||+.|.+|. .+..+||++|++++
T Consensus 253 f~v~~v~~~~~~g~~ISST~IR~~l~~G~v~~A~~lLp~~~~~~~ 297 (297)
T cd02169 253 IEVIEIERKKYDGQPISASTVRQLLKEGNLEEIAKLVPETTYEFL 297 (297)
T ss_pred CEEEEecccccCCcEEcHHHHHHHHHcCCHHHHHHhCCHHhHhhC
Confidence 234444321 124799999999999997 67899999999864
No 25
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.26 E-value=2.7e-11 Score=103.72 Aligned_cols=146 Identities=15% Similarity=0.133 Sum_probs=86.0
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCC--CeeeChhhhcC-CCccchHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD--FIMVDPWEANQ-SGYQRTLTVLS 77 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~--~~~v~~~E~~~-~~~syT~dtl~ 77 (205)
||+.+++.|++.+ |+|+|+|+. +..++.|++.+++++|++|++.++++.+ ++.+-.++-.. ....+..+ ++
T Consensus 21 GHl~~i~~a~~~~--d~l~v~i~s---~~~~~~~~~~~~~~~R~~mi~~~~~~~~~~r~~~~pi~d~~~~~~~W~~~-v~ 94 (340)
T PRK05379 21 GHLAVIREALSRA--KKVIVLIGS---ADLARSIKNPFSFEERAQMIRAALAGIDLARVTIRPLRDSLYNDSLWLAE-VQ 94 (340)
T ss_pred HHHHHHHHHHHHC--CEEEEEEcc---CCCCCcCCCCCCHHHHHHHHHHHhhcCCCceEEEEECCCCCcChHHHHHH-HH
Confidence 8999999999998 999998532 3344456678999999999999998543 44444444321 11111111 11
Q ss_pred HHHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEE
Q 028685 78 RVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKL 157 (205)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~ 157 (205)
..-+..- +++.++. ++|.|.=. . .++ .+++...+ +..
T Consensus 95 ~~v~~~~------~~~~~~~-~~g~~~~~--~---~~~----~~~f~~~~---------------------------~~~ 131 (340)
T PRK05379 95 AAVAEHA------GADARIG-LIGHEKDA--S---SYY----LRSFPQWE---------------------------LVD 131 (340)
T ss_pred HHHHhcc------CCCCcEE-EECCcCCC--C---hHH----HHhccccc---------------------------ccc
Confidence 1111110 0112443 33654411 1 110 22221111 111
Q ss_pred EcCCCCCccchHHHHHHHHcCCCCCc---cChHHHHHHHHhCC
Q 028685 158 VDELVPNQISSTRIRDCICRGLSIKY---LTEDKVIDYIRESR 197 (205)
Q Consensus 158 ~~~~~~~~ISST~IR~~~~~g~~i~~---~vp~~V~~yI~~~~ 197 (205)
+ .....+|||.||+++..|..+.. +||++|.+||.+-+
T Consensus 132 ~--~~~~~~s~T~iR~~~~~~~~~~~~~~~vP~~v~~~l~~~~ 172 (340)
T PRK05379 132 V--PNTEDLSATEIRDAYFEGRISSFYGWAVPAPVYAFLEAFR 172 (340)
T ss_pred C--CcccccCccHHHHHHHcCCCchhhhhcCCHHHHHHHHHhc
Confidence 1 12357999999999999998665 89999999998753
No 26
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.07 E-value=1.2e-09 Score=83.81 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=49.4
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC--CCCCCHHHHHHHHHHHHcCCCCeeeChhhhc
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK--RGLISAEHRINLCNLACKSSDFIMVDPWEAN 65 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K--~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~ 65 (205)
||+.+++.|++.+ |+|+++| ++.+++| +..+++++|++|+++++++.+++.|+.+|+.
T Consensus 14 GHl~li~~a~~~~--d~v~vi~-----~~~~~~~~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~ 73 (158)
T cd02167 14 GHVYLIYKALSQV--DELLIIV-----GSDDTRDDARTGLPLEKRLRWLREIFPDQENIVVHTLNEP 73 (158)
T ss_pred HHHHHHHHHHHHC--CEEEEEE-----CCCCcccccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence 8999999999997 9999975 3444444 4689999999999999999999999998874
No 27
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.91 E-value=1.8e-08 Score=79.43 Aligned_cols=47 Identities=11% Similarity=-0.016 Sum_probs=37.0
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCc-CCCCCCHHHHHHHHHHHHcC
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK-KRGLISAEHRINLCNLACKS 53 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~-K~~~~~~~~Rl~Ml~la~~~ 53 (205)
||+.+++.|++.+ |+|++.- -+++..+ .++.+++.+|+.|++.++.+
T Consensus 19 GHl~~I~~al~~~--devII~I----GSA~~s~t~~NPFTa~ER~~MI~~aL~e 66 (196)
T PRK13793 19 AHMQTIEIALQQS--RYVILAL----GSAQMERNIKNPFLAIEREQMILSNFSL 66 (196)
T ss_pred HHHHHHHHHHHhC--CEEEEEE----ccCCCCCCCCCCCCHHHHHHHHHHhcch
Confidence 8999999999998 7877753 3343333 45789999999999999864
No 28
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.90 E-value=2.2e-09 Score=91.53 Aligned_cols=159 Identities=13% Similarity=0.163 Sum_probs=96.4
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||+.|+++|.+.++.+.|+|+ . .|+..+|+++|++|++.++++.++++|.... .|++..
T Consensus 154 GH~~li~~A~~~~d~~~v~v~----~------~~~~~f~~~~R~~~v~~~~~~~~nv~v~~~~------~~~is~----- 212 (332)
T TIGR00124 154 GHRYLIEQAARQCDWLHLFVV----K------EDASLFSYDERFALVKQGIQDLSNVTVHNGS------AYIISR----- 212 (332)
T ss_pred HHHHHHHHHHHHCCEEEEEEE----e------CCCCCCCHHHHHHHHHHHhcCCCCEEEEecC------Cceecc-----
Confidence 899999999999966666653 1 2457999999999999999999998887533 244433
Q ss_pred HHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhc--ccEEEEeCC--CCChh-hHhhh-hhhhh----h
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRN--FGVICIRRE--GQDVE-KIISD-NEILD----K 150 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~--~~~iv~~R~--~~~~~-~~~~~-~~~l~----~ 150 (205)
..||. ||+-..|.+...+. .- + -.|+.. +..+-++|. |.++. ..... +..+. .
T Consensus 213 atfp~-----------yflk~~~~~~~~~~--~l---d-~~~f~~~ia~~l~i~~r~vg~ep~~~~t~~yn~~m~~~~~~ 275 (332)
T TIGR00124 213 ATFPA-----------YFLKEQDVADDCYT--EI---D-LKLFRYKIAPALGITHRFVGTEPLCPVTALYNQKMKYWLEE 275 (332)
T ss_pred ccchh-----------hhcCChhHHHHHHH--HH---H-HHHHHHhchHhhCCccceeCCCCCCHhHHHHHHHHHHhhhc
Confidence 35663 77777765554221 00 0 123322 333333332 32211 10000 11111 0
Q ss_pred -c-CCcEE--EEc--CCCCCccchHHHHHHHHcCC--CCCccChHHHHHHHHhCC
Q 028685 151 -N-KGNIK--LVD--ELVPNQISSTRIRDCICRGL--SIKYLTEDKVIDYIRESR 197 (205)
Q Consensus 151 -~-~~~i~--~~~--~~~~~~ISST~IR~~~~~g~--~i~~~vp~~V~~yI~~~~ 197 (205)
. ...|. .+. ......+|+|.||+.+++|. .+..+||+...+|++++.
T Consensus 276 ~~~~~~I~~~~I~R~~~~~~~~SASaIR~~L~~~~~~~i~~~VP~~t~~~l~~~~ 330 (332)
T TIGR00124 276 PNDAPPIEVVEIQRKLAAGGPISASTVRELLAKGDWAAWAKLVPETTLHFLQNLL 330 (332)
T ss_pred cCCCCCcEEEEEeeecCCCCeeCHHHHHHHHHcCCHHHHHHhCCHHHHHHHHHhh
Confidence 0 01222 221 01123699999999998874 688999999999998874
No 29
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=98.88 E-value=7e-09 Score=77.44 Aligned_cols=118 Identities=19% Similarity=0.154 Sum_probs=73.7
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC-CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRV 79 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~-~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l 79 (205)
||+.+++.|.+.. +.+++++++- +. .++.|+ ...+.++|++|++. ++..+.+.+. . +.++++.+
T Consensus 16 GH~~ll~~a~~~~--~~l~v~v~~~-~~-~~~~~~~~~~~~~eR~~~l~~-~~~vd~v~~~-----~-----~~~~~~~l 80 (136)
T cd02170 16 GHIRFLEEAKKLG--DYLIVGVARD-ET-VAKIKRRPILPEEQRAEVVEA-LKYVDEVILG-----H-----PWSYFKPL 80 (136)
T ss_pred HHHHHHHHHHHhC--CEEEEEECCc-HH-HHhcCCCCCCCHHHHHHHHHc-CCCcCEEEEC-----C-----CCCHhHHH
Confidence 8999999999986 5666654221 11 112333 68999999999995 5444433332 1 23566667
Q ss_pred HHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEc
Q 028685 80 KNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVD 159 (205)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~ 159 (205)
.+.+|+ ++++|.|...... +|.++ +.+-+....+++.| .
T Consensus 81 ~~~~~~-----------~vv~G~d~~fg~~---~~~~~--~~l~~~g~~~~~~~--~----------------------- 119 (136)
T cd02170 81 EELKPD-----------VIVLGDDQKNGVD---EEEVY--EELKKRGKVIEVPR--K----------------------- 119 (136)
T ss_pred HHHCCC-----------EEEECCCCCCCCc---chhHH--HHHHHCCeEEEECC--C-----------------------
Confidence 665542 8999999876666 45443 55554433333332 0
Q ss_pred CCCCCccchHHHHHHHH
Q 028685 160 ELVPNQISSTRIRDCIC 176 (205)
Q Consensus 160 ~~~~~~ISST~IR~~~~ 176 (205)
. ...||||.||+++.
T Consensus 120 ~--~~~vSSt~Ir~~i~ 134 (136)
T cd02170 120 K--TEGISSSDIIKRIL 134 (136)
T ss_pred C--CCCCcHHHHHHHHH
Confidence 1 23799999999985
No 30
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=98.65 E-value=8e-08 Score=73.88 Aligned_cols=155 Identities=19% Similarity=0.207 Sum_probs=89.5
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||..++++|.+.. |.+++. +.- ..++.+|+++|++|++.-+++.+++.|-. |-.|-+..
T Consensus 14 GH~yLiE~Aa~~~--d~l~vF---VV~-----eD~S~Fpf~~R~~LVk~G~~~L~NV~V~~------~g~YiIS~----- 72 (182)
T PF08218_consen 14 GHRYLIEQAAKEC--DWLHVF---VVS-----EDRSLFPFADRYELVKEGTADLPNVTVHP------GGDYIISS----- 72 (182)
T ss_pred HHHHHHHHHHHhC--CEEEEE---EEc-----cccCcCCHHHHHHHHHHHhCcCCCEEEEc------CCCeeeec-----
Confidence 8999999999999 665542 111 23478999999999999999999988753 22233322
Q ss_pred HHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhc--ccEEEEeCC--CCChh-hHhhh-----hhhhhh
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRN--FGVICIRRE--GQDVE-KIISD-----NEILDK 150 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~--~~~iv~~R~--~~~~~-~~~~~-----~~~l~~ 150 (205)
..||. ||+-..+.....+. .- + -.|+.. +.-+-+.|. |.++. ..... .+.|+.
T Consensus 73 aTFPs-----------YFlK~~~~~~~~~~--~l-D---~~iF~~~IAp~L~It~RfVG~EP~~~vT~~YN~~M~~~Lp~ 135 (182)
T PF08218_consen 73 ATFPS-----------YFLKDEDDVIKAQA--EL-D---ATIFKKYIAPALGITKRFVGEEPFSPVTRIYNEAMKEILPP 135 (182)
T ss_pred ccChh-----------hhccchhHHHHHHH--HH-H---HHHHHHHhhHhcCcccceeCCCCCCHHHHHHHHHHHHhccc
Confidence 23442 66666555543331 00 0 122221 222223322 22211 11000 112333
Q ss_pred cCCcEEEEcC--CCCCccchHHHHHHHHcCC--CCCccChHHHHHHH
Q 028685 151 NKGNIKLVDE--LVPNQISSTRIRDCICRGL--SIKYLTEDKVIDYI 193 (205)
Q Consensus 151 ~~~~i~~~~~--~~~~~ISST~IR~~~~~g~--~i~~~vp~~V~~yI 193 (205)
.+-.+..++- .....||+|.+|+.+++|. .+..+||+..++|+
T Consensus 136 ~gi~v~ei~R~~~~g~~ISAS~VR~~l~~~~~~~i~~lVP~tT~~yl 182 (182)
T PF08218_consen 136 YGIEVVEIPRKEINGEPISASRVRKLLKEGDFEEIKKLVPETTYDYL 182 (182)
T ss_pred cCCEEEEEecccCCCcEEcHHHHHHHHHcCCHHHHHHhCCHhhHhhC
Confidence 3222233321 1225899999999999996 68899999999885
No 31
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.55 E-value=7.5e-07 Score=77.92 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=47.7
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCC---Cc-CCCCCCHHHHHHHHHHHHcCCCCeeeChhhh
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDA---YK-KRGLISAEHRINLCNLACKSSDFIMVDPWEA 64 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~---~~-K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~ 64 (205)
||+.+++.|.+.+ |+++++++...|.... +. ++..++.++|++|++.++++.++++|..++-
T Consensus 67 GH~~lI~~A~~~~--d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~v~~~~~ 132 (399)
T PRK08099 67 GHIYLIQRACSQV--DELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIKIHAFNE 132 (399)
T ss_pred HHHHHHHHHHHHC--CeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 8999999999997 7988886554432110 11 2357999999999999999999999886654
No 32
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=98.32 E-value=9e-07 Score=75.49 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=47.8
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCc-C-CCCCCHHHHHHHHHHHHcCCCC-eeeChhh
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK-K-RGLISAEHRINLCNLACKSSDF-IMVDPWE 63 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~-K-~~~~~~~~Rl~Ml~la~~~~~~-~~v~~~E 63 (205)
||+.+++.|.+.+ |+|+|+|+ +.+|+ | +..+++++|++|+++++++.++ ++|++++
T Consensus 16 GHl~ii~~a~~~~--d~v~v~~~-----~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~v~v~~~~ 74 (325)
T TIGR01526 16 GHIYLIYEAFSKV--DELHIVVG-----SLFYDSKAKRPPPVQDRLRWLREIFKYQKNQIFIHHLN 74 (325)
T ss_pred HHHHHHHHHHHHC--CEEEEEEC-----CCCcCccCCCCCCHHHHHHHHHHHhccCCCeEEEEEcC
Confidence 8999999999996 99999754 33334 3 4689999999999999999999 9998887
No 33
>PRK13671 hypothetical protein; Provisional
Probab=98.28 E-value=2.9e-06 Score=71.15 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=39.1
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC-C-CCCHHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-G-LISAEHRINLCNLA 50 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~-~-~~~~~~Rl~Ml~la 50 (205)
||+.+++.|++.+++|.|++| |++++++|. . .++..+|++|+...
T Consensus 15 GHl~~~~~a~~~~~~d~vi~v-----pSg~~~qrg~pa~~~~~~R~~ma~~~ 61 (298)
T PRK13671 15 GHIYQINYIKNKFPNEKIIVI-----LSGKYTQRGEIAVASFEKRKKIALKY 61 (298)
T ss_pred HHHHHHHHHHHhcCCCEEEEE-----ECcCCCCCCCCCCCCHHHHHHHHHHc
Confidence 899999999999999999986 567777886 3 55999999999876
No 34
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=98.21 E-value=4.8e-06 Score=63.48 Aligned_cols=47 Identities=13% Similarity=-0.030 Sum_probs=35.8
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCC--CCCcCC-CCCCHHHHHHHHHHHHcC
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVN--DAYKKR-GLISAEHRINLCNLACKS 53 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~--~~~~K~-~~~~~~~Rl~Ml~la~~~ 53 (205)
||+.+++.|.+.. |++++.. ++. .+++|+ ...|+++|++|++.+++.
T Consensus 16 GH~~ll~~A~~~~--d~livgi----~~d~~~~~~K~~~i~~~e~R~~~v~~~~~~ 65 (153)
T PRK00777 16 GHRALLRKAFELG--KRVTIGL----TSDEFAKSYKKHKVRPYEVRLKNLKKFLKA 65 (153)
T ss_pred HHHHHHHHHHHcC--CEEEEEE----cCCccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 8999999999874 7787742 222 234454 578999999999998876
No 35
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.18 E-value=3.5e-06 Score=69.57 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=39.4
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeC
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVD 60 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~ 60 (205)
||-.++++|..+. |-+++ |++- ...+.+|+++|++|++.-+++.+++.+.
T Consensus 160 GH~YLVEqAaaqc--DwlHL---FvV~-----eD~S~f~y~~R~~Lv~~G~~~l~Nvt~H 209 (352)
T COG3053 160 GHRYLVEQAAAQC--DWLHL---FVVK-----EDSSLFPYEDRLDLVKKGTADLPNVTVH 209 (352)
T ss_pred hhHHHHHHHHhhC--CEEEE---EEEe-----cccccCCHHHHHHHHHHhhccCCceEEe
Confidence 8999999999999 65554 1211 2236899999999999999999998663
No 36
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=98.17 E-value=3.3e-05 Score=60.43 Aligned_cols=91 Identities=14% Similarity=0.172 Sum_probs=50.1
Q ss_pred CcHHHHHHHHHHhc---cCCeEEeccccCCCCC---CCcCC--CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccch
Q 028685 1 MHLRMFELARDTLN---SEGYCVIGGYMSPVND---AYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRT 72 (205)
Q Consensus 1 gHl~ia~~a~~~~~---ld~v~~vp~~~~P~~~---~~~K~--~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT 72 (205)
||+.+++.|.+..+ ++.+.+. +.|... .+++. ...+.++|++|++.. . .+.+.+-+++-.....+.
T Consensus 14 GH~~ll~~a~~~a~~~~~~~vvv~---f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l-~-vd~v~~~~f~~~~~~~s~- 87 (180)
T cd02064 14 GHQALIKTLKKIARERGLPSAVLT---FDPHPREVFLPDKAPPRLTTLEEKLELLESL-G-VDYLLVLPFDKEFASLSA- 87 (180)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEE---ECCCHHHHhCCCCCCCcCCCHHHHHHHHHHc-C-CCEEEEeCCCHHHHcCCH-
Confidence 89999999999864 3444443 233211 12332 478999999999964 2 455555444321111111
Q ss_pred HHHHHHHHHHhhhhccccCCCceEEEEEccchhhc
Q 028685 73 LTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLES 107 (205)
Q Consensus 73 ~dtl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~ 107 (205)
-+.++.+....+ --.+++|.|---.
T Consensus 88 ~~Fi~~il~~~~----------~~~ivvG~Df~FG 112 (180)
T cd02064 88 EEFVEDLLVKLN----------AKHVVVGFDFRFG 112 (180)
T ss_pred HHHHHHHHhhcC----------CeEEEEccCCCCC
Confidence 123333322221 2479999987544
No 37
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=97.94 E-value=4.9e-05 Score=56.02 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLA 50 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la 50 (205)
||..++++|.+.. +++.++..+ -+......+....+.++|++|++..
T Consensus 16 GH~~ll~~a~~~~--~~l~v~v~~-d~~~~~~~~~~~~~~~~R~~~l~~~ 62 (129)
T cd02171 16 GHLNLLERAKALG--DKLIVAVST-DEFNAGKGKKAVIPYEQRAEILESI 62 (129)
T ss_pred HHHHHHHHHHHhC--CEEEEEEec-cHhHHhcCCCCCCCHHHHHHHHHcC
Confidence 8999999999886 556555322 1211111223578999999999754
No 38
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=97.60 E-value=0.00012 Score=47.35 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=36.5
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC-CCCCHHHHHHHHHHHHcCC
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-GLISAEHRINLCNLACKSS 54 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~-~~~~~~~Rl~Ml~la~~~~ 54 (205)
||+.++++|.+..+ +.+++|++ .. ..+++|+ ..++.++|.+|++.++...
T Consensus 14 GH~~~l~~a~~~~~-~~vv~i~~--~~-~~~~~~~~~~~~~~~R~~~~~~~~~~~ 64 (66)
T TIGR00125 14 GHLDLLERAKELFD-ELIVGVGS--DQ-FVNPLKGEPVFSLEERLEMLKALKYVD 64 (66)
T ss_pred HHHHHHHHHHHhCC-EEEEEECc--hH-hccccCCCCCCCHHHHHHHHHHhcccc
Confidence 89999999999986 45555431 00 2344565 6899999999999887654
No 39
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=97.53 E-value=0.0015 Score=49.62 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=48.5
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCC-CCCcC-CCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVN-DAYKK-RGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSR 78 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~-~~~~K-~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~ 78 (205)
||+.++++|.+...-|.+++. +..-. ....| .+..+.++|.+|++. ++.-+.+.+.. ...++.+.++.
T Consensus 17 GHi~~L~~A~~lg~~d~LiVg---V~sD~~~~~~k~~pi~~~~eR~~~l~~-~~~Vd~Vi~~~------~~~~~~~~i~~ 86 (150)
T cd02174 17 GHANALRQAKKLGPNDYLIVG---VHSDEEIHKHKGPPVMTEEERYEAVRH-CKWVDEVVEGA------PYVTTPEFLDK 86 (150)
T ss_pred HHHHHHHHHHHhCCCCEEEEE---EecCHHHhhcCCCCcCCHHHHHHHHHh-cCCCCeEEECC------CCCChHHHHHH
Confidence 899999999987643455542 22110 00012 268999999999994 45444444321 12345556553
Q ss_pred HHHHhhhhccccCCCceEEEEEccchhhc
Q 028685 79 VKNFLIEAGLISTESLKVMLVCGSDLLES 107 (205)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~fiiG~D~~~~ 107 (205)
+ -|+ +++.|.|...+
T Consensus 87 ~---~~d-----------~vv~G~d~~~~ 101 (150)
T cd02174 87 Y---KCD-----------YVAHGDDIYLD 101 (150)
T ss_pred h---CCC-----------EEEECCCCCCC
Confidence 3 232 78899776543
No 40
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=97.45 E-value=0.0002 Score=55.26 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=37.2
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCc-CCCCCCHHHHHHHHHHHHcC
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK-KRGLISAEHRINLCNLACKS 53 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~-K~~~~~~~~Rl~Ml~la~~~ 53 (205)
||+.+++.|++.. |+++++- -+++..+ .+..+++.+|+.|++.++++
T Consensus 18 GHl~vi~~al~~v--DeliI~i----GSa~~~~t~~nPfTagER~~mi~~~L~~ 65 (172)
T COG1056 18 GHLYVIKRALSKV--DELIIVI----GSAQESHTLKNPFTAGERIPMIRDRLRE 65 (172)
T ss_pred hHHHHHHHHHHhC--CEEEEEE----ccCcccccccCCCCccchhHHHHHHHHh
Confidence 8999999999996 9988863 3443333 34679999999999999875
No 41
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=97.22 E-value=0.0062 Score=48.97 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=90.6
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCC-C--CeeeChhhh--cCCCccchHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS-D--FIMVDPWEA--NQSGYQRTLTV 75 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~-~--~~~v~~~E~--~~~~~syT~dt 75 (205)
||..|.+.|++.+ -|.+.+.| .- .+.|...++.+-|++=.+..++.+ | ++.++.+.. .-.|+. +-
T Consensus 35 aHe~l~~~a~e~~-~~~lll~p-----lv-G~~k~~d~~~~~r~~~~~~~~~~y~p~~~v~l~~lp~~mr~aGPr---Ea 104 (215)
T PF01747_consen 35 AHEYLMRRALEKA-GDGLLLHP-----LV-GPTKPGDIPYEVRVRCYEALIDNYFPKNRVLLSPLPLPMRYAGPR---EA 104 (215)
T ss_dssp HHHHHHHHHHHHH-TSEEEEEE-----BE-SB-STTSCCHHHHHHHHHHHHHHCSSTTGEEEEBBESB---SHHH---HH
T ss_pred HHHHHHHHHHHHh-cCcEEEEe-----cc-CCCCcCCCCHHHHHHHHHHHHHHhCCCCcEEEeccCchhcccCcH---HH
Confidence 5889999999998 56777654 11 124667899999999999999883 3 455555444 223433 22
Q ss_pred H--HHHHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhc------ccEEEEeCCCCChhhHhhhhhh
Q 028685 76 L--SRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRN------FGVICIRREGQDVEKIISDNEI 147 (205)
Q Consensus 76 l--~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~------~~~iv~~R~~~~~~~~~~~~~~ 147 (205)
+ ..+++.|+ --.||+|-|..---. -|..++.++|++. +.++.+..-.+..
T Consensus 105 llhAiirkN~G----------cTh~IvGrdhAg~g~---~Y~~~~a~~i~~~~~~el~I~~v~~~~~~Yc~--------- 162 (215)
T PF01747_consen 105 LLHAIIRKNYG----------CTHFIVGRDHAGVGD---FYDPYEAQEIFDEYAGELGIEPVPFPEMVYCP--------- 162 (215)
T ss_dssp HHHHHHHHHTT-----------SEEEE-TTTT-SCB---SS-TTHHHHHHHHHHHHCTSEEEE---EEEET---------
T ss_pred HHHHHHHHHCC----------CceEEeCCcCCCccc---cCCccHHHHHHHcCcccCCceEEecceEEEEc---------
Confidence 2 33456664 347889999885544 2434455777764 3333333221110
Q ss_pred hhhcCCcEEEEcCCCC-----CccchHHHHHHHHcCCCC-CccChHHHHHHHHh
Q 028685 148 LDKNKGNIKLVDELVP-----NQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 195 (205)
Q Consensus 148 l~~~~~~i~~~~~~~~-----~~ISST~IR~~~~~g~~i-~~~vp~~V~~yI~~ 195 (205)
..+.+......+. ..||+|.||+++++|..+ ..++.++|.+-|.+
T Consensus 163 ---~~~~~~~~~~cp~~~~~~~~iSgt~ir~~L~~G~~pP~~f~rpeV~~~L~~ 213 (215)
T PF01747_consen 163 ---KCGQYVSAKTCPHGKHHHISISGTEIRELLREGEEPPEWFMRPEVAAILRR 213 (215)
T ss_dssp ---TTTEEEECGGSSTTTGGGEE--HHHHHHHHHTT----TTTS-HHHHHHHHH
T ss_pred ---CCCeEeeccccCCCCCcceeeCHHHHHHHHHCcCCCCCCcCcHHHHHHHHH
Confidence 0122222221111 479999999999999865 56889999988765
No 42
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=97.19 E-value=0.0047 Score=52.31 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=47.1
Q ss_pred CcHHHHHHHHHHhccCCeEE-eccccCCCCC---CCcC--CCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchH-
Q 028685 1 MHLRMFELARDTLNSEGYCV-IGGYMSPVND---AYKK--RGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTL- 73 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~-vp~~~~P~~~---~~~K--~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~- 73 (205)
||..+++.|.+..+...+.. +- -+.|... .+.+ ..+.+.++|+++++.. +-+.+.+-++.-+... .|.
T Consensus 28 GHq~Ll~~a~~~a~~~~~~~~vi-tFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~--gVD~~~~~~F~~~~~~--ls~e 102 (305)
T PRK05627 28 GHQALLARAREIARERGLPSVVM-TFEPHPREVFAPDKAPARLTPLRDKAELLAEL--GVDYVLVLPFDEEFAK--LSAE 102 (305)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEE-EecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc--CCCEEEEecCCHHHhc--CCHH
Confidence 89999999998765332211 11 1333211 0122 2478999999999754 2444544444211111 122
Q ss_pred HHHHH-HHHHhhhhccccCCCceEEEEEccch
Q 028685 74 TVLSR-VKNFLIEAGLISTESLKVMLVCGSDL 104 (205)
Q Consensus 74 dtl~~-l~~~~~~~~~~~~~~~~~~fiiG~D~ 104 (205)
+.++. |.+.+. --++++|.|-
T Consensus 103 ~Fi~~~l~~~l~----------~~~iVvG~Df 124 (305)
T PRK05627 103 EFIEDLLVKGLN----------AKHVVVGFDF 124 (305)
T ss_pred HHHHHHHHhccC----------CCEEEECCCC
Confidence 23443 333343 2369999987
No 43
>PRK07143 hypothetical protein; Provisional
Probab=97.17 E-value=0.0039 Score=52.08 Aligned_cols=131 Identities=15% Similarity=0.246 Sum_probs=66.7
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC-CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRV 79 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~-~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l 79 (205)
||..+++.|.+. + +...++ ++-.|......+. .+.+.++|+++++.. +.+.+.+-++.-+....|. -+-++.+
T Consensus 30 GHq~Ll~~a~~~-~-~~~vV~-tF~~P~~~~~~~~~~l~~~~er~~~l~~~--Gvd~~~~~~F~~~~a~ls~-e~Fi~~l 103 (279)
T PRK07143 30 GHLELFKKAKES-N-DEIVIV-IFKNPENLPKNTNKKFSDLNSRLQTLANL--GFKNIILLDFNEELQNLSG-NDFIEKL 103 (279)
T ss_pred HHHHHHHHHHHC-C-CcEEEE-EeCChHHhcccCcccCCCHHHHHHHHHHC--CCCEEEEeCCCHHHhCCCH-HHHHHHH
Confidence 899999999963 2 232222 1212221111111 378899999998743 4445555555322111111 1334444
Q ss_pred HHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEc
Q 028685 80 KNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVD 159 (205)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~ 159 (205)
.+ .. ++ .+++|.|---.-.. .+. ++.|-+.+. .+..++
T Consensus 104 l~-l~---------~~-~iVvG~Df~FG~~r--~G~---~~~L~~~~~--------------------------~v~~v~ 141 (279)
T PRK07143 104 TK-NQ---------VS-FFVVGKDFRFGKNA--SWN---ADDLKEYFP--------------------------NVHIVE 141 (279)
T ss_pred Hh-cC---------CC-EEEECCCcccCCCC--CCC---HHHHHHhCC--------------------------cEEEeC
Confidence 33 32 13 79999986544221 222 233333321 111221
Q ss_pred C--CCCCccchHHHHHHHHcCC
Q 028685 160 E--LVPNQISSTRIRDCICRGL 179 (205)
Q Consensus 160 ~--~~~~~ISST~IR~~~~~g~ 179 (205)
. .....||||.||+.|++|.
T Consensus 142 ~~~~~g~~ISST~IR~~l~~G~ 163 (279)
T PRK07143 142 ILKINQQKISTSLLKEFIEFGD 163 (279)
T ss_pred CEEcCCcEEcHHHHHHHHHcCC
Confidence 0 1124799999999999984
No 44
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=97.14 E-value=0.0013 Score=49.52 Aligned_cols=49 Identities=14% Similarity=-0.050 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCC-CCcCC---CCCCHHHHHHHHHHHHcCC
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVND-AYKKR---GLISAEHRINLCNLACKSS 54 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~-~~~K~---~~~~~~~Rl~Ml~la~~~~ 54 (205)
||+.++..|.+..+ ++++++. +... .++|+ ...+.++|++|++.+++..
T Consensus 14 GH~~Ll~~a~~~~~-d~v~vgv----t~d~~~~~k~~~~~i~s~e~R~~~l~~~l~~~ 66 (143)
T cd02164 14 GHKILLSVAFLLAG-EKLIIGV----TSDELLKNKSLKELIEPYEERIANLHEFLVDL 66 (143)
T ss_pred HHHHHHHHHHHHhc-CCcEEEE----eCchhcccCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 89999999999887 6777742 2222 22333 2579999999999999874
No 45
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=97.05 E-value=0.012 Score=49.50 Aligned_cols=91 Identities=11% Similarity=0.187 Sum_probs=48.1
Q ss_pred CcHHHHHHHHHHhc---cCCeEEeccccCCCCC---CCcCC-CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchH
Q 028685 1 MHLRMFELARDTLN---SEGYCVIGGYMSPVND---AYKKR-GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTL 73 (205)
Q Consensus 1 gHl~ia~~a~~~~~---ld~v~~vp~~~~P~~~---~~~K~-~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~ 73 (205)
||..+++.|.+... +..+.+. |.|... .+.+. .+.+.++|+++++.. +.+.+.+-++.-.....|..
T Consensus 13 GHq~Li~~~~~~a~~~~~~~~V~t---F~phP~~~~~~~~~~~l~~~~~k~~~l~~~--Gvd~~~~~~F~~~~a~ls~e- 86 (288)
T TIGR00083 13 GHQALLQELKQIAEEKGLPPAVLL---FEPHPSEQFNWLTAPALTPLEDKARQLQIK--GVEQLLVVVFDEEFANLSAL- 86 (288)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEE---eCCChHHHhCccCCCCCCCHHHHHHHHHHc--CCCEEEEeCCCHHHHcCCHH-
Confidence 89999999997543 3333332 334211 00111 278889999998864 44455555543221121111
Q ss_pred HHHHHH-HHHhhhhccccCCCceEEEEEccchhhc
Q 028685 74 TVLSRV-KNFLIEAGLISTESLKVMLVCGSDLLES 107 (205)
Q Consensus 74 dtl~~l-~~~~~~~~~~~~~~~~~~fiiG~D~~~~ 107 (205)
+.++.+ .+++. --.+++|.|---.
T Consensus 87 ~Fi~~~l~~~l~----------~~~ivvG~Df~FG 111 (288)
T TIGR00083 87 QFIDQLIVKHLH----------VKFLVVGDDFRFG 111 (288)
T ss_pred HHHHHHHHhccC----------CcEEEECCCccCC
Confidence 234332 33332 2478999986544
No 46
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=96.92 E-value=0.033 Score=48.08 Aligned_cols=163 Identities=16% Similarity=0.207 Sum_probs=98.1
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCC---CeeeChhhh--cCCCccchHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD---FIMVDPWEA--NQSGYQRTLTV 75 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~---~~~v~~~E~--~~~~~syT~dt 75 (205)
||..+.+.|++.++-+.+.+. |.-. +.|...++.+-|++=.+.+++.++ +..+..+.. .-.|+. +-
T Consensus 171 aHe~l~~~a~~~~~~~~lll~-----plvG-~~k~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~lp~~mryAGPr---Ea 241 (353)
T cd00517 171 AHEELMKRAAEKLLNDGLLLH-----PLVG-WTKPGDVPDEVRMRAYEALLEEYYLPERTVLAILPLPMRYAGPR---EA 241 (353)
T ss_pred hhHHHHHHHHHHcCCCcEEEE-----eccC-CCCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEeccchhcccCcH---HH
Confidence 689999999998754566664 3221 246678999999999999999854 344444433 345544 23
Q ss_pred H--HHHHHHhhhhccccCCCceEEEEEccchhhcCCCCC-CCChhhHHHHhhccc------EEEEeCCCCChhhHhhhhh
Q 028685 76 L--SRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPG-FWMPEQVWTICRNFG------VICIRREGQDVEKIISDNE 146 (205)
Q Consensus 76 l--~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~-~W~~~~~e~l~~~~~------~iv~~R~~~~~~~~~~~~~ 146 (205)
+ ..+++.|+ --.||+|-|..---+. . .|..++.++|++... ++.+.---|.
T Consensus 242 llhAiirkN~G----------cThfIvGrDHAG~g~~-~~yY~~y~aq~i~~~~~~~l~I~~v~~~~~~Yc--------- 301 (353)
T cd00517 242 LWHAIIRKNYG----------ATHFIVGRDHAGVGHP-GDYYGPYDAQEIFKKLAPELGIEPVPFREAAYC--------- 301 (353)
T ss_pred HHHHHHHHhCC----------CCeEEECCCCCCCCCc-cccCCcchhHHHHHhCcccCCceEEecceeEEe---------
Confidence 2 34556664 3589999887533300 1 233345577877542 1111110000
Q ss_pred hhhhcCCcEEEEcCCC----CCccchHHHHHHHHcCCCC-CccChHHHHHHHHh
Q 028685 147 ILDKNKGNIKLVDELV----PNQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 195 (205)
Q Consensus 147 ~l~~~~~~i~~~~~~~----~~~ISST~IR~~~~~g~~i-~~~vp~~V~~yI~~ 195 (205)
...+.+...+..+ ...+|+|.||++++.|..+ ..++.++|.+-|.+
T Consensus 302 ---~~c~~~~~~~~cp~~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~~L~~ 352 (353)
T cd00517 302 ---PKCDGMASEDTCPHGEDFLNISGTKLRKMLREGEKPPEWFMRPEVAKVLRE 352 (353)
T ss_pred ---cCCCeEEecccCCCCCceeeeCHHHHHHHHHCCCCCCCccCcHHHHHHHhh
Confidence 0012222222122 2589999999999999865 56889999987765
No 47
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=96.84 E-value=0.0026 Score=46.64 Aligned_cols=46 Identities=22% Similarity=0.138 Sum_probs=28.0
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNL 49 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~l 49 (205)
||..++++|.+.. +.+.+.- .+-|......+....+.++|+++++.
T Consensus 13 GH~~~l~~a~~~~--~~~iv~v-~~d~~~~~~~~~~i~~~eeR~~~l~~ 58 (125)
T TIGR01518 13 GHINLLERAKQLG--DYLIVAL-STDEFNLQKQKKAYHSYEHRKLILET 58 (125)
T ss_pred HHHHHHHHHHHcC--CEEEEEE-echHHHhhcCCCCCCCHHHHHHHHHc
Confidence 8999999999865 4444321 11222211112356899999998874
No 48
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=96.38 E-value=0.16 Score=44.53 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=96.8
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcC-CC--CeeeChhhh--cCCCccchHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS-SD--FIMVDPWEA--NQSGYQRTLTV 75 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~-~~--~~~v~~~E~--~~~~~syT~dt 75 (205)
||..|.+.|++.. |.+.+ .|.-. +.|...++.+-|++=.+.++++ +| ++.+..+.. .-.|+. +-
T Consensus 201 aHe~l~~~a~e~~--d~lll-----~plvG-~~k~~di~~~~r~~~~~~~~~~y~p~~~v~l~~lp~~mryAGPr---Ea 269 (391)
T PRK04149 201 AHEYLQKCALEIV--DGLLL-----NPLVG-ETKSGDIPAEVRMEAYEALLKNYYPKDRVLLSVTPAAMRYAGPR---EA 269 (391)
T ss_pred HHHHHHHHHHHhc--CeEEE-----ecCcC-CCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccchhcccCcH---HH
Confidence 6889999998876 55544 34322 2466789999999999999884 33 344444443 334544 22
Q ss_pred H--HHHHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcc-------cEEEEeCCCCChhhHhhhhh
Q 028685 76 L--SRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNF-------GVICIRREGQDVEKIISDNE 146 (205)
Q Consensus 76 l--~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~-------~~iv~~R~~~~~~~~~~~~~ 146 (205)
+ ..+++.|+ --.||+|-|..---. .|..++.++|++.. .++.+..--|.
T Consensus 270 ~lhAivrkN~G----------cTh~IvGrDHAG~g~---~Y~~~~aq~i~~~~~~~~l~I~~v~~~~~~Yc--------- 327 (391)
T PRK04149 270 IFHAIVRKNYG----------CTHFIVGRDHAGVGD---YYGPYDAQEIFDEFTEEELGITPLKFEEAFYC--------- 327 (391)
T ss_pred HHHHHHHHhCC----------CCeEEECCCCCCccc---cCCCchHHHHHHhCCcccCCceEEecceeEEe---------
Confidence 2 34556664 358999999864433 23344557888764 11111111110
Q ss_pred hhhhcCCcEEEEcCC-----CCCccchHHHHHHHHcCCCC-CccChHHHHHHHHhC
Q 028685 147 ILDKNKGNIKLVDEL-----VPNQISSTRIRDCICRGLSI-KYLTEDKVIDYIRES 196 (205)
Q Consensus 147 ~l~~~~~~i~~~~~~-----~~~~ISST~IR~~~~~g~~i-~~~vp~~V~~yI~~~ 196 (205)
...+.+...... ....||+|.||++++.|..+ ..++.++|.+-|.+.
T Consensus 328 ---~~c~~~~~~~~cphg~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~iL~~~ 380 (391)
T PRK04149 328 ---PKCGGMASEKTCPHGKEDRVHLSGTKVREMLREGEKPPPEFSRPEVAEVLIKG 380 (391)
T ss_pred ---cCCCeEEEcccCCCCCCceEeeCHHHHHHHHHCcCCCCCccCcHHHHHHHHHH
Confidence 001223222111 12589999999999999865 578999999887764
No 49
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=96.27 E-value=0.042 Score=41.30 Aligned_cols=46 Identities=17% Similarity=0.072 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC---CCCCCHHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLA 50 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K---~~~~~~~~Rl~Ml~la 50 (205)
||..++++|.+..+ .+.++- .+-|.... .| ....+.++|+++++..
T Consensus 26 GH~~ll~~a~~~~~--~~~v~v-~~d~~~~~-~k~~~~~l~~~eeR~~~l~~~ 74 (144)
T TIGR02199 26 GHVSYLQQARALGD--RLVVGV-NSDASVKR-LKGETRPINPEEDRAEVLAAL 74 (144)
T ss_pred HHHHHHHHHHHhCC--ccEEEE-ECCcCHHH-hCCCCCCcCCHHHHHHHHHhc
Confidence 89999999998763 333321 11221110 12 2478999999999854
No 50
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=96.23 E-value=0.011 Score=44.99 Aligned_cols=81 Identities=20% Similarity=0.175 Sum_probs=50.1
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC---CCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLS 77 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K---~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~ 77 (205)
||+.+.++|.+.. |.+++. ..+-...+..| .+..+.++|++|+ ++++.-+.+.+...+ ..+.+.++
T Consensus 17 GHi~~L~~A~~lg--d~liVg--V~~D~~~~~~K~~~~pi~~~~eR~~~v-~~~~~Vd~V~v~~~~------~~~~~~~~ 85 (152)
T cd02173 17 GHIEFLEKARELG--DYLIVG--VHDDQTVNEYKGSNYPIMNLHERVLSV-LACRYVDEVVIGAPY------VITKELIE 85 (152)
T ss_pred HHHHHHHHHHHcC--CEEEEE--EeCcHHHHhhcCCCCCCCCHHHHHHHH-HhcCCCCEEEECCCC------cchHHHHH
Confidence 8999999999875 665553 11111112234 2589999999999 678876766664322 12334433
Q ss_pred HHHHHhhhhccccCCCceEEEEEccchhh
Q 028685 78 RVKNFLIEAGLISTESLKVMLVCGSDLLE 106 (205)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~fiiG~D~~~ 106 (205)
+.-| -+++.|.|...
T Consensus 86 ---~~~~-----------d~vv~G~d~~~ 100 (152)
T cd02173 86 ---HFKI-----------DVVVHGKTEET 100 (152)
T ss_pred ---HhCC-----------CEEEECCCCcc
Confidence 3223 27899988764
No 51
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=95.47 E-value=0.57 Score=40.48 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=96.9
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCC---C--eeeChhhhcCCCccchHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD---F--IMVDPWEANQSGYQRTLTV 75 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~---~--~~v~~~E~~~~~~syT~dt 75 (205)
||-.|.+.|++.. |++.+-| +.- -.|...++++-|++-.+..++.+. + +.+-.+..+-.|+. +-
T Consensus 198 aHEyl~K~Al~~v--dgllv~p--lVG----~tk~gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~~~aMRyagPr---Ea 266 (397)
T COG2046 198 AHEYLQKRALEKV--DGLLVHP--LVG----ATKPGDIPDEVRMEYYEALLKHYYPPDRVFLSVLPAAMRYAGPR---EA 266 (397)
T ss_pred HHHHHHHHHHHhc--CcEEEEe--eec----cccCCCchHHHHHHHHHHHHHhCCCCCcEEEEecHHHhhhcCcH---HH
Confidence 6888999999988 7766543 122 145578999999999999998742 2 44555555555543 22
Q ss_pred H--HHHHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCCh-hhHHHHhhccc----EEEEe-CCCCChhhHhhhhhh
Q 028685 76 L--SRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMP-EQVWTICRNFG----VICIR-REGQDVEKIISDNEI 147 (205)
Q Consensus 76 l--~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~-~~~e~l~~~~~----~iv~~-R~~~~~~~~~~~~~~ 147 (205)
+ .-+++.|. .--||+|-|..--=+ ||. ++.++|++.+. +.++. |...-+
T Consensus 267 ~~HaIIRkNyG----------cTHfIVGRDHAGvG~----yYg~Y~aq~if~~f~~eLgI~p~~f~e~~YC--------- 323 (397)
T COG2046 267 LLHAIIRKNYG----------CTHFIVGRDHAGVGD----YYGPYDAQEIFDEFSPELGITPVFFEEFFYC--------- 323 (397)
T ss_pred HHHHHHHhhcC----------CeeeeecCCCCCccc----cCCcccHHHHHHhcccccCcEEEeccceeec---------
Confidence 2 22446664 358999999874433 443 45588887543 21111 110000
Q ss_pred hhhcCCcEEEEc---CC--CCCccchHHHHHHHHcCC-CCCccChHHHHHHHHhC
Q 028685 148 LDKNKGNIKLVD---EL--VPNQISSTRIRDCICRGL-SIKYLTEDKVIDYIRES 196 (205)
Q Consensus 148 l~~~~~~i~~~~---~~--~~~~ISST~IR~~~~~g~-~i~~~vp~~V~~yI~~~ 196 (205)
++. +.+.-.. .. ....+|+|.+|+.++.|. ....+.-|+|.+-|.+.
T Consensus 324 -~~c-~~~~~~~~cph~~~~~~~~SGt~lR~~Lr~G~~PP~~f~RPEV~~vl~k~ 376 (397)
T COG2046 324 -PKC-GQMVSTKTCPHGDEHHLHISGTKLREMLRAGVKPPEEFSRPEVADVLRKS 376 (397)
T ss_pred -ccc-cCCcccccCCCCCcceEEEccHHHHHHHHcCCCCCcccccHHHHHHHHHh
Confidence 000 1111111 01 125799999999999996 45677888998887753
No 52
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.29 E-value=0.67 Score=42.69 Aligned_cols=163 Identities=16% Similarity=0.184 Sum_probs=95.1
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCC--eeeChhhh--cCCCccchHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDF--IMVDPWEA--NQSGYQRTLTVL 76 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~--~~v~~~E~--~~~~~syT~dtl 76 (205)
||..+.+.|++.++. .+.+ .|.-- ..|...++.+-|++=.+.+++.+|. +.+..+.. .-.|+. +-+
T Consensus 201 ~He~l~~~a~~~~d~-~lll-----~p~~G-~~k~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~mryaGpr---eai 270 (568)
T PRK05537 201 AHEELTKRAAREVGA-NLLI-----HPVVG-MTKPGDIDHFTRVRCYEALLDKYPPATTLLSLLPLAMRMAGPR---EAL 270 (568)
T ss_pred HHHHHHHHHHHhcCC-eEEE-----ecCCC-CCCCCCCCHHHHHHHHHHHHHhCCCCcEEEEeccchhcccCcH---HHH
Confidence 689999999998732 4433 45332 2466789999999999999988763 33444333 334543 222
Q ss_pred --HHHHHHhhhhccccCCCceEEEEEccchhhcCC--CCCCCC-hhhHHHHhhccc------EEEEeCCCCChhhHhhhh
Q 028685 77 --SRVKNFLIEAGLISTESLKVMLVCGSDLLESFA--IPGFWM-PEQVWTICRNFG------VICIRREGQDVEKIISDN 145 (205)
Q Consensus 77 --~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~--~w~~W~-~~~~e~l~~~~~------~iv~~R~~~~~~~~~~~~ 145 (205)
..+++.|+ --.||+|-|..---. +-+.+| .++.++|++.+. ++.+..--|.
T Consensus 271 ~hAi~r~N~G----------cth~ivGrdhAg~~~~~~~g~~Y~~~~a~~i~~~~~~~l~i~~~~~~~~~Y~-------- 332 (568)
T PRK05537 271 WHAIIRRNYG----------CTHFIVGRDHAGPGKDSRGKPFYGPYDAQELFAKYADEIGITMVPFKEMVYV-------- 332 (568)
T ss_pred HHHHHHHhCC----------CCeEEECCCCCCCCCCCcCcccCCchHHHHHHHhCccccCceEEecceeEEE--------
Confidence 33455564 347999988653311 001233 345578887641 1111110000
Q ss_pred hhhhhcCCcEEEEcCC----CCCccchHHHHHHHHcCCCC-CccChHHHHHHHHh
Q 028685 146 EILDKNKGNIKLVDEL----VPNQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 195 (205)
Q Consensus 146 ~~l~~~~~~i~~~~~~----~~~~ISST~IR~~~~~g~~i-~~~vp~~V~~yI~~ 195 (205)
...+.+...+.. ....+|+|.||++++.|..+ ..++.++|.+-+.+
T Consensus 333 ----~~~~~~~~~~~cph~~~~~~~sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~ 383 (568)
T PRK05537 333 ----QDKAQYVPVDEVPQGATVLTISGTELRRRLREGLEIPEWFSFPEVVAELRR 383 (568)
T ss_pred ----cCCCeEEecCcCCCCcceeccCHHHHHHHHHCCCCCChhhcHHHHHHHHHH
Confidence 011223222211 12589999999999999865 57899999995554
No 53
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=94.97 E-value=0.042 Score=38.79 Aligned_cols=43 Identities=14% Similarity=-0.008 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC--CCCCHHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR--GLISAEHRINLCNLA 50 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~--~~~~~~~Rl~Ml~la 50 (205)
||+.+++.|.+.+ |++++.+ +.+++.+. ...+.++|++|++.+
T Consensus 14 GH~~l~~~a~~~~--d~~i~~i-----~~~~~~~~~~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 14 GHAKLICRAKGIA--DQCVVRI-----DDNPPVKVWQDPHELEERKESIEED 58 (105)
T ss_pred HHHHHHHHHHHhC--CcEEEEE-----cCCCcccccCChHHHHHHHHHHHHH
Confidence 8999999999988 7877753 33333432 478999999999976
No 54
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=94.45 E-value=0.25 Score=42.81 Aligned_cols=44 Identities=16% Similarity=0.036 Sum_probs=29.2
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCC-CCCcCC-CCCCHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVN-DAYKKR-GLISAEHRINLCNL 49 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~-~~~~K~-~~~~~~~Rl~Ml~l 49 (205)
||..++++|.+.. +.+.|- +.|-. ....|. ...+.++|++|++.
T Consensus 26 GH~~~L~qAk~~g--~~Livg---v~~d~~i~~~K~~pi~~~eeR~~~l~~ 71 (353)
T PTZ00308 26 GHANALRQARALG--DELFVG---CHSDEEIMRNKGPPVMHQEERYEALRA 71 (353)
T ss_pred HHHHHHHHHHHhC--CEEEEE---eCCHHHHhhcCCCCCCCHHHHHHHHHh
Confidence 8999999999976 455442 12211 111233 57899999999884
No 55
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=94.27 E-value=0.55 Score=39.79 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC-----CCCCHHHHHHHHHHHHcCCCCeeeChhh
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-----GLISAEHRINLCNLACKSSDFIMVDPWE 63 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~-----~~~~~~~Rl~Ml~la~~~~~~~~v~~~E 63 (205)
||..+++.|.+....+.+-.+---+.|......+. .+++.++|+++++.. +-+.+.+.++.
T Consensus 30 GHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~--gvd~~~v~~F~ 95 (304)
T COG0196 30 GHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGY--GVDALVVLDFD 95 (304)
T ss_pred hHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhc--CCcEEEEEeCC
Confidence 89999999997765544321111133421111111 268899999987753 33355555554
No 56
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=93.80 E-value=0.23 Score=43.87 Aligned_cols=83 Identities=18% Similarity=0.109 Sum_probs=50.4
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC-CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRV 79 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~-~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l 79 (205)
||+.++++|.+.. |.++|- ..+=......|. +..+.++|++|++. ++.-+.+.+.. ...++.++++.+
T Consensus 68 GH~~~L~qAk~lG--d~LIVG--V~SDe~i~~~Kg~PV~~~eER~~~v~a-lk~VD~Vv~~a------py~~~~d~~~~l 136 (418)
T PLN02406 68 GHANALRQARALG--DELVVG--VVSDEEIIANKGPPVTPMHERMIMVSG-VKWVDEVIPDA------PYAITEEFMNKL 136 (418)
T ss_pred HHHHHHHHHHHhC--CEEEEE--EecChhhhccCCCCcCCHHHHHHHHHh-cCCCceEEeCC------ccccchHHHHHH
Confidence 8999999999976 555542 111111112344 68999999999986 55544443321 122455666555
Q ss_pred HHHhhhhccccCCCceEEEEEccch
Q 028685 80 KNFLIEAGLISTESLKVMLVCGSDL 104 (205)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~fiiG~D~ 104 (205)
-+++.- =|++.|.|-
T Consensus 137 i~~~~~----------D~vVhGdD~ 151 (418)
T PLN02406 137 FNEYNI----------DYIIHGDDP 151 (418)
T ss_pred HHHhCC----------CEEEECCCc
Confidence 455531 278999883
No 57
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=93.53 E-value=0.16 Score=37.96 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCC--cCC-CCCCHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAY--KKR-GLISAEHRINLCN 48 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~--~K~-~~~~~~~Rl~Ml~ 48 (205)
||+...++|.+.. |++.|+. ++....- +|+ +..+.++|++|++
T Consensus 16 GHi~~L~~Ak~lG--d~liVv~---a~de~~~~~~k~~pi~~~~qR~evl~ 61 (140)
T COG0615 16 GHIEFLRQAKKLG--DELIVVV---ARDETVIKRKKRKPIMPEEQRAEVLE 61 (140)
T ss_pred hHHHHHHHHHHhC--CeEEEEE---eccHHHHHhcCCCCCCCHHHHHHHHH
Confidence 8999999999977 8877763 4544333 233 6799999999987
No 58
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=93.40 E-value=0.16 Score=43.93 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCC-CCCCcCC---CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPV-NDAYKKR---GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVL 76 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~-~~~~~K~---~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl 76 (205)
||+.++++|.+.. |.+++- +..- ..+..|. +..+.++|.+|+. +++.-+.+.+...+ ..|.+.+
T Consensus 207 GHi~~L~~A~~lg--d~LIVg---V~sD~~v~~~Kg~~~Pi~~~~eR~~~v~-a~~~Vd~Vvi~~~~------~~~~~~i 274 (353)
T PTZ00308 207 GHIRVLQKARELG--DYLIVG---VHEDQVVNEQKGSNYPIMNLNERVLGVL-SCRYVDEVVIGAPF------DVTKEVI 274 (353)
T ss_pred HHHHHHHHHHHhC--CEEEEE---EcchHHhHhhcCCCCCCCCHHHHHHHHH-hhCCCCeEEEcCCC------CChHHHH
Confidence 8999999999876 655542 2111 1222343 5899999999994 88776666554222 2344444
Q ss_pred HHHHHHhhhhccccCCCceEEEEEccchh
Q 028685 77 SRVKNFLIEAGLISTESLKVMLVCGSDLL 105 (205)
Q Consensus 77 ~~l~~~~~~~~~~~~~~~~~~fiiG~D~~ 105 (205)
+.+ -| =+++.|.|..
T Consensus 275 ~~~---~~-----------d~vv~G~d~~ 289 (353)
T PTZ00308 275 DSL---HI-----------NVVVGGKFSD 289 (353)
T ss_pred HHh---CC-----------CEEEECCCCc
Confidence 332 23 2788998765
No 59
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=93.24 E-value=0.093 Score=45.98 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=26.2
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCN 48 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~ 48 (205)
||+..++++++..+.|.+++| +|..-..-.-...++--.|.+|.=
T Consensus 16 GH~y~i~~~k~~~~ad~ii~v---MSGnFvQRGEPAi~dKw~RA~~AL 60 (388)
T PF05636_consen 16 GHLYQIEQAKKITGADVIIAV---MSGNFVQRGEPAIIDKWTRAEMAL 60 (388)
T ss_dssp HHHHHHHHHH---TSSEEEEE---E--TTSBTSSB-SS-HHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCEEEEE---ECCCcccCCCeeeCCHHHHHHHHH
Confidence 899999999999999986654 333211111124788899998843
No 60
>PLN02413 choline-phosphate cytidylyltransferase
Probab=89.83 E-value=3 Score=34.99 Aligned_cols=49 Identities=20% Similarity=0.250 Sum_probs=30.2
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCC-CCCcC-CCCCCHHHHHHHHHHHHcC
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVN-DAYKK-RGLISAEHRINLCNLACKS 53 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~-~~~~K-~~~~~~~~Rl~Ml~la~~~ 53 (205)
||+...++|.+.++-+.+++ . +..-. ....| ++..+.++|.+|+. +++-
T Consensus 42 GHir~L~qAK~lg~~d~LIV-G--V~sDe~v~~~KGrPIm~~~ER~e~V~-acKy 92 (294)
T PLN02413 42 GHARSLEQAKKLFPNTYLLV-G--CCNDELTHKYKGKTVMTEDERYESLR-HCKW 92 (294)
T ss_pred HHHHHHHHHHHhCCCCEEEE-E--ecccHHHHhcCCCCCCCHHHHHHHHH-hccc
Confidence 89999999999764344333 1 11111 01112 36789999999987 4444
No 61
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=87.96 E-value=3.9 Score=36.54 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=30.9
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC---CCCCCHHHHHHHHHHHHcCCCCe
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLACKSSDFI 57 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K---~~~~~~~~Rl~Ml~la~~~~~~~ 57 (205)
||+.+++.|.+.. +.+.+.-+ +-+. ....| .+..+.++|.++++ +++.-+++
T Consensus 355 GH~~~l~~a~~~~--~~l~v~v~-~d~~-~~~~k~~~~pi~~~~~R~~~~~-~~~~vd~v 409 (473)
T PRK11316 355 GHVSYLANARKLG--DRLIVAVN-SDAS-VKRLKGEGRPVNPLEQRMAVLA-ALEAVDWV 409 (473)
T ss_pred HHHHHHHHHHHhC--CeeEEEEe-Cchh-HHHhCCCCCCCCCHHHHHHHHH-hcCcCCEE
Confidence 7999999999876 44444321 1121 11123 24789999999984 44444443
No 62
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=85.45 E-value=3.2 Score=37.33 Aligned_cols=74 Identities=14% Similarity=0.222 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHH-------HHHcCCCCeeeChhhhcCCCccchHHH
Q 028685 3 LRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCN-------LACKSSDFIMVDPWEANQSGYQRTLTV 75 (205)
Q Consensus 3 l~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~-------la~~~~~~~~v~~~E~~~~~~syT~dt 75 (205)
+.+|..|...++++...=+ .|.+-+ | .-..++++=++ +|+.+.|-..-+.||-.-+|..|.+|.
T Consensus 66 ~~ias~~q~~~~v~t~mHl-----TCtn~~-~---~~Id~aLe~a~~~GirNILALRGDpP~g~d~~~~~e~gF~yA~DL 136 (590)
T KOG0564|consen 66 LGIASSAQNVCGLETCMHL-----TCTNMP-K---EMIDKALEQAKALGIRNILALRGDPPIGQDKWVEEEGGFRYAVDL 136 (590)
T ss_pred HHHHHHHHHhcCccceeee-----eccCcc-H---HHHHHHHHHHHHhCchhhhhhcCCCCCCccccccccCCchhHHHH
Confidence 5688888888887753221 222111 1 11112222211 233445545445588777889999999
Q ss_pred HHHHHHHhhh
Q 028685 76 LSRVKNFLIE 85 (205)
Q Consensus 76 l~~l~~~~~~ 85 (205)
++++|++|.+
T Consensus 137 Vr~Irs~YGD 146 (590)
T KOG0564|consen 137 VRYIRSKYGD 146 (590)
T ss_pred HHHHHHHhCC
Confidence 9999999976
No 63
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=83.35 E-value=4.6 Score=35.05 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=28.3
Q ss_pred CccchHHHHHHHHcCC--CCCccChHHHHHHHHhC
Q 028685 164 NQISSTRIRDCICRGL--SIKYLTEDKVIDYIRES 196 (205)
Q Consensus 164 ~~ISST~IR~~~~~g~--~i~~~vp~~V~~yI~~~ 196 (205)
...|+|.||+.+..|. .+..+||+.+.+-|.++
T Consensus 203 ~~aSaT~IR~~i~~~~~~~~~~~vP~~t~~~l~~~ 237 (358)
T COG1323 203 EGASATAIRKAIFSGDLERIANMVPKETLEILSSK 237 (358)
T ss_pred cccchHHHHHHHhcchHHHHHhhCCHHHHHHHHhc
Confidence 5789999999999875 57789999999988875
No 64
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=80.40 E-value=2.3 Score=32.42 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=47.6
Q ss_pred CcHHHHHHHHHHhccCCeE-EeccccCCCCC---CCcCC--CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHH
Q 028685 1 MHLRMFELARDTLNSEGYC-VIGGYMSPVND---AYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLT 74 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~-~vp~~~~P~~~---~~~K~--~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~d 74 (205)
||..+++.|.+.....++- +|- -|.|... .|.+. .+.+.++|+++++.. +.+.+.+-+++.+-..-+ .-+
T Consensus 20 GHq~Li~~~~~~a~~~~~~~~v~-tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~--Gvd~~~~~~F~~~~~~ls-~~~ 95 (157)
T PF06574_consen 20 GHQKLIKKAVEIAKEKGLKSVVL-TFDPHPKEVLNPDKPPKLLTSLEEKLELLESL--GVDYVIVIPFTEEFANLS-PED 95 (157)
T ss_dssp HHHHHHHHHHHHHHHCT-EEEEE-EESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT--TESEEEEE-CCCHHCCS--HHH
T ss_pred HHHHHHHHHhhhhhhcccceEEE-EcccCHHHHhcCCCcccCCCCHHHHHHHHHHc--CCCEEEEecchHHHHcCC-HHH
Confidence 8999999999988654421 111 1344210 11222 389999999999974 233444444432111111 113
Q ss_pred HHHH-HHHHhhhhccccCCCceEEEEEccchhhc
Q 028685 75 VLSR-VKNFLIEAGLISTESLKVMLVCGSDLLES 107 (205)
Q Consensus 75 tl~~-l~~~~~~~~~~~~~~~~~~fiiG~D~~~~ 107 (205)
-++. |++..+ --.+++|.|.--.
T Consensus 96 Fi~~iL~~~l~----------~~~ivvG~DfrFG 119 (157)
T PF06574_consen 96 FIEKILKEKLN----------VKHIVVGEDFRFG 119 (157)
T ss_dssp HHHHHCCCHCT----------EEEEEEETT-EES
T ss_pred HHHHHHHhcCC----------ccEEEEccCccCC
Confidence 3443 332332 4689999986533
No 65
>PRK15364 pathogenicity island 2 effector protein SseB; Provisional
Probab=74.53 E-value=3.6 Score=32.00 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=17.9
Q ss_pred CCCCCccChHHHHHHHHhCCCC
Q 028685 178 GLSIKYLTEDKVIDYIRESRLY 199 (205)
Q Consensus 178 g~~i~~~vp~~V~~yI~~~~LY 199 (205)
+.....-||+.|++||++|+.=
T Consensus 92 ddK~k~~LPddVI~YmrdNgI~ 113 (196)
T PRK15364 92 DAKTKEEVPEDVIKYMRDNGIL 113 (196)
T ss_pred CCcccccCCHHHHHHHHHcCce
Confidence 4455677999999999999863
No 66
>PRK13670 hypothetical protein; Provisional
Probab=68.29 E-value=2.6 Score=36.97 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=27.5
Q ss_pred CccchHHHHHHHHcC--CCCCccChHHHHHHHHh
Q 028685 164 NQISSTRIRDCICRG--LSIKYLTEDKVIDYIRE 195 (205)
Q Consensus 164 ~~ISST~IR~~~~~g--~~i~~~vp~~V~~yI~~ 195 (205)
..+|+|.||+.+.+| ..+..+||+...+++.+
T Consensus 199 ~~aSASaIR~~L~~~~~~~i~~~vP~~t~~il~~ 232 (388)
T PRK13670 199 EFASATAIRKALLEKDLDELKKFVPKATLELLKR 232 (388)
T ss_pred cChhHHHHHHHHHhCCHHHHHHhCCHHHHHHHHh
Confidence 359999999999776 46889999999998876
No 67
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=68.06 E-value=7.5 Score=29.02 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=28.5
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCC-CCCcC-CCCCCHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVN-DAYKK-RGLISAEHRINLCNL 49 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~-~~~~K-~~~~~~~~Rl~Ml~l 49 (205)
||..+++.|.+.. +.+.+. +.|.. -.+.| ....+.++|+++++.
T Consensus 19 GH~~ll~~a~~~~--~~~vv~---~~~d~~~~~~~~~~i~~~~eR~~~l~~ 64 (144)
T cd02172 19 GHVRHLQAARSLG--DILVVS---LTSDRYVNKGPGRPIFPEDLRAEVLAA 64 (144)
T ss_pred HHHHHHHHHHHhC--CeEEEE---EeChHHhccCCCCCCCCHHHHHHHHHc
Confidence 8999999999986 343332 23321 11223 257899999999964
No 68
>PRK13660 hypothetical protein; Provisional
Probab=66.25 E-value=62 Score=25.34 Aligned_cols=131 Identities=11% Similarity=0.110 Sum_probs=73.1
Q ss_pred HHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChh---hHHH
Q 028685 45 NLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPE---QVWT 121 (205)
Q Consensus 45 ~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~---~~e~ 121 (205)
+++++.=++..+|-++- ..+-..++.+.+..||++||+ .++..++=.-+. .. +|.+. -+..
T Consensus 34 ~l~~~~e~G~~wfi~gg---alG~d~wAaEvvl~LK~~yp~--------lkL~~~~PF~~q---~~--~W~e~~q~~y~~ 97 (182)
T PRK13660 34 KLIALLEEGLEWVIISG---QLGVELWAAEVVLELKEEYPD--------LKLAVITPFEEH---GE--NWNEANQEKLAN 97 (182)
T ss_pred HHHHHHHCCCCEEEECC---cchHHHHHHHHHHHHHhhCCC--------eEEEEEeCccch---hh--cCCHHHHHHHHH
Confidence 33333333455554442 122245778899999999985 466666544433 32 57653 2357
Q ss_pred HhhcccEEEEeCCCCC--hhhHhhhhhhhhhcCCc-EEEEcCCCCCccchH--HHHHHHHc----CCCCCccChHHHHHH
Q 028685 122 ICRNFGVICIRREGQD--VEKIISDNEILDKNKGN-IKLVDELVPNQISST--RIRDCICR----GLSIKYLTEDKVIDY 192 (205)
Q Consensus 122 l~~~~~~iv~~R~~~~--~~~~~~~~~~l~~~~~~-i~~~~~~~~~~ISST--~IR~~~~~----g~~i~~~vp~~V~~y 192 (205)
|++.|+++++.-+.+- ...+...+..+-...+. +.+-+. ... ++| .+|.+.+. |..+..+.|+...+.
T Consensus 98 i~~~aD~v~~vs~~~y~~p~q~~~rn~fmv~~sd~~i~~YD~-e~~--Ggt~y~~~~A~k~~~~~~y~i~~I~~~~l~~~ 174 (182)
T PRK13660 98 ILKQADFVKSISKRPYESPAQFRQYNQFMLEHTDGALLVYDE-ENE--GSPKYFYEAAKKKQEKEDYPLDLITFDDLQEI 174 (182)
T ss_pred HHHhCCEEEEecCCCCCChHHHHHHHHHHHHccCeEEEEEcC-CCC--CChHHHHHHHHHhhhccCceEEEeCHHHHHHH
Confidence 8888999888765532 33332223333223333 444442 211 444 46766666 777777778777775
Q ss_pred HH
Q 028685 193 IR 194 (205)
Q Consensus 193 I~ 194 (205)
+.
T Consensus 175 ~~ 176 (182)
T PRK13660 175 AE 176 (182)
T ss_pred HH
Confidence 54
No 69
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=51.88 E-value=7.2 Score=25.79 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=12.8
Q ss_pred HHHHHHHHhCCCCCCC
Q 028685 187 DKVIDYIRESRLYLNS 202 (205)
Q Consensus 187 ~~V~~yI~~~~LY~~~ 202 (205)
..+.+||++|+|+...
T Consensus 27 ~~lw~YIk~~~L~dp~ 42 (76)
T PF02201_consen 27 KRLWQYIKENNLQDPK 42 (76)
T ss_dssp HHHHHHHHHTTSBESS
T ss_pred HHHHHHHHHhcCCCcc
Confidence 3678999999999653
No 70
>PLN02388 phosphopantetheine adenylyltransferase
Probab=50.70 E-value=9.1 Score=29.84 Aligned_cols=49 Identities=20% Similarity=0.123 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC--C-CCCCHHHHHHHHHHHHcC
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK--R-GLISAEHRINLCNLACKS 53 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K--~-~~~~~~~Rl~Ml~la~~~ 53 (205)
||..++..|.+... +.+. |. |.|..-...| . ...+.+.|.++++..+..
T Consensus 34 GHq~LL~~A~~~a~-~~vv-Ig--ft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~ 85 (177)
T PLN02388 34 GHRLFLKAAAELAR-DRIV-IG--VCDGPMLSKKQFAELIQPIEERMHNVEEYIKS 85 (177)
T ss_pred HHHHHHHHHHHhhh-cCEE-Ee--cCCChhhcccCCCcccCCHHHHHHHHHHHHHH
Confidence 89999999998763 2332 21 3332111112 2 367999999999988875
No 71
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=50.13 E-value=20 Score=30.72 Aligned_cols=47 Identities=17% Similarity=0.062 Sum_probs=30.5
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCC--CCcCCCCCCHHHHHHHHHHHHcC
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVND--AYKKRGLISAEHRINLCNLACKS 53 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~--~~~K~~~~~~~~Rl~Ml~la~~~ 53 (205)
||..+.+.|.+.. |.+.+. +. +.. ...|+...|.++|+++++..++.
T Consensus 15 GH~~lL~~A~~~g--d~LiVg---vt-~D~~~~~~k~~~~~~e~R~~~v~~fl~~ 63 (322)
T PRK01170 15 GHKALLKKAIETG--DEVVIG---LT-SDEYVRKNKVYPIPYEDRKRKLENFIKK 63 (322)
T ss_pred HHHHHHHHHHHcC--CEEEEE---Ec-cHHHHHhcCCCCCCHHHHHHHHHHHHHh
Confidence 8999999997643 655543 21 111 11223239999999999998754
No 72
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=43.12 E-value=22 Score=23.44 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=12.9
Q ss_pred ChHHHHHHHHhCCCCCC
Q 028685 185 TEDKVIDYIRESRLYLN 201 (205)
Q Consensus 185 vp~~V~~yI~~~~LY~~ 201 (205)
+-..+.+||++|+|...
T Consensus 25 v~~~lw~YIk~n~L~d~ 41 (77)
T smart00151 25 IIKRLWEYIKEHNLQDP 41 (77)
T ss_pred HHHHHHHHHHHhcccCC
Confidence 33467899999999863
No 73
>PLN02660 pantoate--beta-alanine ligase
Probab=42.04 E-value=39 Score=28.45 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=30.5
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC---CCCCCHHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLA 50 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K---~~~~~~~~Rl~Ml~la 50 (205)
||+.+++.|.+..+ ..++--+..|..=+|.+ +.+.+.++|+++++.+
T Consensus 35 GH~~LI~~a~~~a~---~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~ 84 (284)
T PLN02660 35 GHLSLVRAARARAD---VVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL 84 (284)
T ss_pred HHHHHHHHHHHhCC---EEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc
Confidence 89999999999773 33332233444322212 2467899999998865
No 74
>KOG1946 consensus RNA polymerase I transcription factor UAF [Transcription]
Probab=41.04 E-value=18 Score=29.70 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=16.2
Q ss_pred ccChHHHHHHHHhCCCCCCC
Q 028685 183 YLTEDKVIDYIRESRLYLNS 202 (205)
Q Consensus 183 ~~vp~~V~~yI~~~~LY~~~ 202 (205)
.-|-..|++||++|+|+-..
T Consensus 122 ~~vvk~iw~YIke~nLqDP~ 141 (240)
T KOG1946|consen 122 TDVVKKIWAYIKEHNLQDPK 141 (240)
T ss_pred HHHHHHHHHHHHHhccCCcc
Confidence 44667899999999998654
No 75
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=40.48 E-value=58 Score=29.12 Aligned_cols=27 Identities=30% Similarity=0.228 Sum_probs=19.3
Q ss_pred cCCCCCCCcCCCCCCHHHHHHHHHHHHc
Q 028685 25 MSPVNDAYKKRGLISAEHRINLCNLACK 52 (205)
Q Consensus 25 ~~P~~~~~~K~~~~~~~~Rl~Ml~la~~ 52 (205)
++|+++||-- ...|.+.|.+++++|-+
T Consensus 232 ~~P~~qNPtG-~tms~~rR~~Ll~lA~~ 258 (459)
T COG1167 232 VTPTFQNPTG-VTMSLERRKALLALAEK 258 (459)
T ss_pred ECCCCCCCCC-CccCHHHHHHHHHHHHH
Confidence 3566666532 35899999999999944
No 76
>PLN02388 phosphopantetheine adenylyltransferase
Probab=39.60 E-value=69 Score=24.94 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=12.5
Q ss_pred CCccchHHHHHHHHc
Q 028685 163 PNQISSTRIRDCICR 177 (205)
Q Consensus 163 ~~~ISST~IR~~~~~ 177 (205)
...||||.||++..+
T Consensus 152 ~~kiSST~iR~~~~~ 166 (177)
T PLN02388 152 GNKLSSTTLRRLEAE 166 (177)
T ss_pred CCccCHHHHHHHHHH
Confidence 368999999998764
No 77
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=39.40 E-value=46 Score=27.85 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=30.4
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC---CCCCCHHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLA 50 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K---~~~~~~~~Rl~Ml~la 50 (205)
||+.+++.|.+.. +. .+|.-+..|..-++.+ +...+.++++++++.+
T Consensus 36 GH~~LI~~a~~~a--~~-vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~ 85 (277)
T cd00560 36 GHLSLVRRARAEN--DV-VVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA 85 (277)
T ss_pred HHHHHHHHHHHhC--CE-EEEEecCChhhcCCcccccccCCCHHHHHHHHHHC
Confidence 8999999999977 33 3333233443322212 2367889999998865
No 78
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=39.10 E-value=48 Score=25.24 Aligned_cols=51 Identities=25% Similarity=0.149 Sum_probs=26.6
Q ss_pred cccEEEEeCCCCChhhHhhhhhhhhh-cCCcEEEEcC---CCCCccchHHHHHHH
Q 028685 125 NFGVICIRREGQDVEKIISDNEILDK-NKGNIKLVDE---LVPNQISSTRIRDCI 175 (205)
Q Consensus 125 ~~~~iv~~R~~~~~~~~~~~~~~l~~-~~~~i~~~~~---~~~~~ISST~IR~~~ 175 (205)
.+..+|+.+..++....+++...-.. .+=.|+.++- ....+||||.||+..
T Consensus 92 ~~e~iVVS~ET~~~Al~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrrge 146 (158)
T COG1019 92 DFEAIVVSPETYPGALKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRRGE 146 (158)
T ss_pred ceeEEEEccccchhHHHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhhhc
Confidence 36788999887654332222110000 0113444431 122589999999754
No 79
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=38.63 E-value=1.4e+02 Score=25.67 Aligned_cols=58 Identities=17% Similarity=0.347 Sum_probs=46.1
Q ss_pred eeeChhhhcCCCccchHHHHHHHHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCC
Q 028685 57 IMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQ 136 (205)
Q Consensus 57 ~~v~~~E~~~~~~syT~dtl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~ 136 (205)
+-+..|.+ |+-.++..+.+..| +.++|||.-....-. + |+-++.+++=|..+.|.
T Consensus 55 Vlttpwg~------ynes~~~eI~~lnp----------d~VLIIGGp~AVs~~----y-----E~~Lks~GitV~RigG~ 109 (337)
T COG2247 55 VLTTPWGI------YNESVLDEIIELNP----------DLVLIIGGPIAVSPN----Y-----ENALKSLGITVKRIGGA 109 (337)
T ss_pred eEecCccc------ccHHHHHHHHhhCC----------ceEEEECCCCcCChh----H-----HHHHHhCCcEEEEecCc
Confidence 43555553 88889999998876 589999998888766 6 78888899999999987
Q ss_pred Chh
Q 028685 137 DVE 139 (205)
Q Consensus 137 ~~~ 139 (205)
+-.
T Consensus 110 nR~ 112 (337)
T COG2247 110 NRY 112 (337)
T ss_pred chH
Confidence 643
No 80
>PF03433 EspA: EspA-like secreted protein ; InterPro: IPR005095 EspA is the prototypical member of this family. EspA, together with EspB, EspD and Tir are exported by a type III secretion system. These proteins are essential for attaching and effacing lesion formation. EspA is a structural protein and a major component of a large, transiently expressed, filamentous surface organelle which forms a direct link between the bacterium and the host cell [, ].; PDB: 1XOU_A.
Probab=37.91 E-value=11 Score=29.64 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=0.0
Q ss_pred CccChHHHHHHHHhCCCC
Q 028685 182 KYLTEDKVIDYIRESRLY 199 (205)
Q Consensus 182 ~~~vp~~V~~yI~~~~LY 199 (205)
..-||+.|++|+++||+=
T Consensus 96 k~~lp~dVi~Ym~~ngI~ 113 (188)
T PF03433_consen 96 KAPLPDDVIDYMRDNGIK 113 (188)
T ss_dssp ------------------
T ss_pred cccCCHHHHHHHHHcCCe
Confidence 346999999999999873
No 81
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=36.75 E-value=14 Score=23.32 Aligned_cols=39 Identities=10% Similarity=0.188 Sum_probs=30.3
Q ss_pred CccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCCCC
Q 028685 164 NQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNS 202 (205)
Q Consensus 164 ~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~~~ 202 (205)
.+.|.-++|+.+.....-..-.-..|.+|+.++|-|..+
T Consensus 25 ~E~~np~lR~~l~~~~~~~~~~~~~l~~~m~~kGwY~~~ 63 (64)
T PF07875_consen 25 LECANPELRQILQQILNECQQMQYELFNYMNQKGWYQPP 63 (64)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 477888999988765433344678999999999999865
No 82
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=35.95 E-value=51 Score=27.70 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=30.1
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC---CCCCCHHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLA 50 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K---~~~~~~~~Rl~Ml~la 50 (205)
||+.+++.|.+.. + ..++.-+..|..-.+.. +...+.++++++++.+
T Consensus 36 GH~~LI~~a~~~a--~-~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~ 85 (282)
T TIGR00018 36 GHMSLIDRAVAEN--D-VVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL 85 (282)
T ss_pred HHHHHHHHHHHhC--C-eEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc
Confidence 8999999999977 3 33333233443322212 1367889999998865
No 83
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=34.29 E-value=51 Score=23.38 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=23.8
Q ss_pred ccchHHHHHHHHcCCCCCccChHHHHHHHHh
Q 028685 165 QISSTRIRDCICRGLSIKYLTEDKVIDYIRE 195 (205)
Q Consensus 165 ~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~ 195 (205)
+..-..||..++...+...-+|.+|++.++.
T Consensus 77 e~~~e~ik~~lk~d~Ca~~~~P~~V~d~L~~ 107 (110)
T PF10828_consen 77 EERRESIKTALKDDPCANTAVPDAVIDSLRR 107 (110)
T ss_pred HHHHHHHHHHHccCccccCCCCHHHHHHHHH
Confidence 3445567777777777777899999999875
No 84
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.91 E-value=2.4e+02 Score=22.46 Aligned_cols=120 Identities=9% Similarity=0.061 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHcC-CCCeeeChhhhcCCCccchHHHHHHHHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCCh
Q 028685 38 ISAEHRINLCNLACKS-SDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMP 116 (205)
Q Consensus 38 ~~~~~Rl~Ml~la~~~-~~~~~v~~~E~~~~~~syT~dtl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~ 116 (205)
.+.++=+++++.+.+. .+.++|. ... .+..+.++.++++|| + .++|+++..+-.+ =
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEit-----l~~-~~~~~~I~~l~~~~p----------~--~~IGAGTVl~~~~---a-- 80 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVT-----LRT-PAALEAIRLIAKEVP----------E--ALIGAGTVLNPEQ---L-- 80 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe-----cCC-ccHHHHHHHHHHHCC----------C--CEEEEeeccCHHH---H--
Confidence 4567778888888885 6666665 222 267889999999996 3 5799999987652 2
Q ss_pred hhHHHH-hhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcCCCCCccchHHHHHHHHcCCCCCccChHHH---HHH
Q 028685 117 EQVWTI-CRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKV---IDY 192 (205)
Q Consensus 117 ~~~e~l-~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V---~~y 192 (205)
+.. -..++|+|.+= .+. +.+.. -. ...+-+++ --.+-|+|.+....|-++-.+.|..+ .+|
T Consensus 81 ---~~a~~aGA~FivsP~--~~~-~vi~~---a~--~~~i~~iP----G~~TptEi~~a~~~Ga~~vKlFPa~~~gg~~~ 145 (212)
T PRK05718 81 ---AQAIEAGAQFIVSPG--LTP-PLLKA---AQ--EGPIPLIP----GVSTPSELMLGMELGLRTFKFFPAEASGGVKM 145 (212)
T ss_pred ---HHHHHcCCCEEECCC--CCH-HHHHH---HH--HcCCCEeC----CCCCHHHHHHHHHCCCCEEEEccchhccCHHH
Confidence 333 34688888873 332 22111 00 12333332 13456788888888888777777664 477
Q ss_pred HHh
Q 028685 193 IRE 195 (205)
Q Consensus 193 I~~ 195 (205)
|+.
T Consensus 146 lk~ 148 (212)
T PRK05718 146 LKA 148 (212)
T ss_pred HHH
Confidence 764
No 85
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=32.71 E-value=38 Score=18.91 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=20.3
Q ss_pred HHHHHHHhccCCeEEeccccCCCCC
Q 028685 6 FELARDTLNSEGYCVIGGYMSPVND 30 (205)
Q Consensus 6 a~~a~~~~~ld~v~~vp~~~~P~~~ 30 (205)
|+.+...++..+++-+...++||.+
T Consensus 7 Ae~~A~~~GC~G~H~mg~~WMPC~~ 31 (34)
T PF12518_consen 7 AEKRAKELGCKGAHKMGDKWMPCSN 31 (34)
T ss_pred HHHHHHHcCCcchhhccCccccCcc
Confidence 5666777999999988888899865
No 86
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=32.42 E-value=1.3e+02 Score=23.32 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=55.0
Q ss_pred ccchHHHHHHHHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChh---hHHHHhhcccEEEEeCCC--CChhhHhh
Q 028685 69 YQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPE---QVWTICRNFGVICIRREG--QDVEKIIS 143 (205)
Q Consensus 69 ~syT~dtl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~---~~e~l~~~~~~iv~~R~~--~~~~~~~~ 143 (205)
..+..+++..||+.||+ .++..++=.-+.. . +|.+. .+..|++.|+++++--+. +....+..
T Consensus 55 D~waae~vl~LK~~yp~--------ikL~~v~Pf~~q~---~--~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~~~~~~~ 121 (177)
T PF06908_consen 55 DLWAAEVVLELKKEYPE--------IKLALVLPFENQG---N--NWNEANQERYQSILEQADFVVVVSERPYYSPGQLQK 121 (177)
T ss_dssp HHHHHHHHHTTTTT-TT---------EEEEEESSB-TT---T--TS-HHHHHHHHHHHHH-SEEEESSSSB---HHHHHH
T ss_pred HHHHHHHHHHHHhhhhh--------eEEEEEEcccchh---h--cCCHHHHHHHHHHHHhCCEEEEccCCCCCCHHHHHH
Confidence 45788899999999986 5787777664443 2 57653 346788899999887553 33333322
Q ss_pred hhhhhhhcCCcEE-EEcCCCCCccchHHHHHHHHc----CCCCCccChHHHHHHH
Q 028685 144 DNEILDKNKGNIK-LVDELVPNQISSTRIRDCICR----GLSIKYLTEDKVIDYI 193 (205)
Q Consensus 144 ~~~~l~~~~~~i~-~~~~~~~~~ISST~IR~~~~~----g~~i~~~vp~~V~~yI 193 (205)
.+..+-...+.++ +.+. ....=....+|.+.+. |..+...-|+...+..
T Consensus 122 rn~fMvdhsd~~iavyD~-~~~G~t~~~~~~a~~~~~~~~y~i~~I~~d~l~~~~ 175 (177)
T PF06908_consen 122 RNRFMVDHSDGLIAVYDG-EPEGGTKYTVRAAKKYQEQKGYPIDLIDPDDLQEIA 175 (177)
T ss_dssp HHHHHHHHSSEEEEE--T-TT--TTHHHHHHHHHHHHHH---EEEE-HHHHHHHH
T ss_pred HhHHHHhCCCeEEEEEeC-CCCCcchHHHHHHHHHhhccCCeEEEecHHHHHHHh
Confidence 2233322233333 3342 2222234445655443 4566666666555443
No 87
>PRK13670 hypothetical protein; Provisional
Probab=32.18 E-value=65 Score=28.33 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHhccCC-eEEeccccCCCCCCCcCCCCCCHHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEG-YCVIGGYMSPVNDAYKKRGLISAEHRINLCNLA 50 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~-v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la 50 (205)
||..+++.|++..+.+- +.|||+.+.--+ ...+++..+|.+|+...
T Consensus 16 GH~~~i~~a~~~a~~~~~~~Vmp~~f~qrg----~p~i~~~~~R~~~a~~~ 62 (388)
T PRK13670 16 GHLYHLNQAKKLTNADVTIAVMSGNFVQRG----EPAIVDKWTRAKMALEN 62 (388)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecHHHhCCC----CCCCCCHHHHHHHHHHc
Confidence 89999999999887653 445555433111 12378999999997764
No 88
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=31.55 E-value=72 Score=26.75 Aligned_cols=47 Identities=19% Similarity=0.216 Sum_probs=29.5
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC---CCCCHHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR---GLISAEHRINLCNLA 50 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~---~~~~~~~Rl~Ml~la 50 (205)
||..+++.|.+.. + ..++.-+..|..-.+.+. .+.+.++|+++++.+
T Consensus 36 GH~~Li~~a~~~a--~-~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~ 85 (281)
T PRK00380 36 GHLSLVREARAEA--D-IVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA 85 (281)
T ss_pred HHHHHHHHHHHhC--C-EEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc
Confidence 8999999999876 3 333322223322111111 367889999998865
No 89
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=29.85 E-value=2.7e+02 Score=22.14 Aligned_cols=120 Identities=9% Similarity=0.072 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHcC-CCCeeeChhhhcCCCccchHHHHHHHHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCCh
Q 028685 38 ISAEHRINLCNLACKS-SDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMP 116 (205)
Q Consensus 38 ~~~~~Rl~Ml~la~~~-~~~~~v~~~E~~~~~~syT~dtl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~ 116 (205)
.+.++=+++++.+++. .+.++|. ... .-..+.++.++++|| + .++|+=++.+-++ =
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit-----~~t-~~a~~~i~~l~~~~~----------~--~~vGAGTVl~~~~---a-- 73 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVT-----LRT-PVALDAIRLLRKEVP----------D--ALIGAGTVLNPEQ---L-- 73 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe-----CCC-ccHHHHHHHHHHHCC----------C--CEEEEEeCCCHHH---H--
Confidence 4566777888888775 4555554 222 246788999999886 3 6688888877662 2
Q ss_pred hhHHHH-hhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcCCCCCccchHHHHHHHHcCCCCCccChHHH---HHH
Q 028685 117 EQVWTI-CRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKV---IDY 192 (205)
Q Consensus 117 ~~~e~l-~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V---~~y 192 (205)
+.. -..++|+|-+= .+.+ ... ... ..++.++. --.+.|+|.+++..|-++-.+-|..+ .+|
T Consensus 74 ---~~a~~aGA~FivsP~--~~~~-v~~---~~~--~~~i~~iP----G~~TptEi~~A~~~Ga~~vKlFPA~~~GG~~y 138 (204)
T TIGR01182 74 ---RQAVDAGAQFIVSPG--LTPE-LAK---HAQ--DHGIPIIP----GVATPSEIMLALELGITALKLFPAEVSGGVKM 138 (204)
T ss_pred ---HHHHHcCCCEEECCC--CCHH-HHH---HHH--HcCCcEEC----CCCCHHHHHHHHHCCCCEEEECCchhcCCHHH
Confidence 333 34688998763 2221 111 111 12344443 25689999999999988878888664 377
Q ss_pred HHh
Q 028685 193 IRE 195 (205)
Q Consensus 193 I~~ 195 (205)
|+.
T Consensus 139 ika 141 (204)
T TIGR01182 139 LKA 141 (204)
T ss_pred HHH
Confidence 764
No 90
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.47 E-value=2.5e+02 Score=22.30 Aligned_cols=121 Identities=9% Similarity=0.113 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHcC-CCCeeeChhhhcCCCccchHHHHHHHHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCCh
Q 028685 38 ISAEHRINLCNLACKS-SDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMP 116 (205)
Q Consensus 38 ~~~~~Rl~Ml~la~~~-~~~~~v~~~E~~~~~~syT~dtl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~ 116 (205)
.+.++=+++++.+++. .+.++|. ... ....+.++.++++|| + .++|+=++.+-++ =+
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit-----~~t-p~a~~~I~~l~~~~~----------~--~~vGAGTVl~~e~---a~- 70 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEIT-----LRT-PAALDAIRAVAAEVE----------E--AIVGAGTILNAKQ---FE- 70 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEe-----CCC-ccHHHHHHHHHHHCC----------C--CEEeeEeCcCHHH---HH-
Confidence 4567778888888876 4444444 332 246788999999886 3 6789998888773 21
Q ss_pred hhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcCCCCCccchHHHHHHHHcCCCCCccChHHH---HHHH
Q 028685 117 EQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKV---IDYI 193 (205)
Q Consensus 117 ~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V---~~yI 193 (205)
+-+-..++|+|-+= .+.+ ++. .-. ..++.++. --.+-|+|-+.+..|-++-.+-|..+ .+||
T Consensus 71 ---~ai~aGA~FivSP~--~~~~-vi~---~a~--~~~i~~iP----G~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yi 135 (201)
T PRK06015 71 ---DAAKAGSRFIVSPG--TTQE-LLA---AAN--DSDVPLLP----GAATPSEVMALREEGYTVLKFFPAEQAGGAAFL 135 (201)
T ss_pred ---HHHHcCCCEEECCC--CCHH-HHH---HHH--HcCCCEeC----CCCCHHHHHHHHHCCCCEEEECCchhhCCHHHH
Confidence 23445688998873 2221 111 011 12344443 14678999999999988777788655 3777
Q ss_pred Hh
Q 028685 194 RE 195 (205)
Q Consensus 194 ~~ 195 (205)
+.
T Consensus 136 ka 137 (201)
T PRK06015 136 KA 137 (201)
T ss_pred HH
Confidence 64
No 91
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=26.85 E-value=1.1e+02 Score=28.11 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=32.5
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC---CCCCCHHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLA 50 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K---~~~~~~~~Rl~Ml~la 50 (205)
||+.+++.|++.. | +.||--|+.|.-=+|.. +..-+.+.=+++|+.+
T Consensus 34 GHlsLi~~A~~~~--d-~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~ 83 (512)
T PRK13477 34 GHLSLIRRARQEN--D-VVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESA 83 (512)
T ss_pred HHHHHHHHHHHhC--C-EEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhc
Confidence 8999999999986 4 44555567776544433 2456677778887764
No 92
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=25.62 E-value=1.1e+02 Score=27.25 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCC-CCCcC---CCCCCHHHHHHHHHHHHcCCCCee
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVN-DAYKK---RGLISAEHRINLCNLACKSSDFIM 58 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~-~~~~K---~~~~~~~~Rl~Ml~la~~~~~~~~ 58 (205)
||+.+.++|.+.- |. .+|. +..-. .+..| .+..+.++|.+++.. ++--+.+.
T Consensus 266 GHi~~L~~Ak~lG--d~-LIVG--V~sD~~v~~~KG~~~Pi~~~~ER~~~v~a-ck~VD~VV 321 (418)
T PLN02406 266 GHVEILRLARALG--DF-LLVG--IHTDQTVSAHRGAHRPIMNLHERSLSVLA-CRYVDEVI 321 (418)
T ss_pred HHHHHHHHHHHhC--CE-EEEE--EeccHHHHHhcCCCCCCCCHHHHHHHHhc-cCcccEEE
Confidence 8999999998854 43 3332 21110 11123 357899999999873 54433333
No 93
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=23.16 E-value=89 Score=22.74 Aligned_cols=49 Identities=8% Similarity=-0.036 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHHHHhhh
Q 028685 34 KRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIE 85 (205)
Q Consensus 34 K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~~~~~~ 85 (205)
++...+..+++..++.++.+...-.|..+.+ ++..|. .+++.|+++|.+
T Consensus 21 ~n~~~~d~~K~~~L~~~L~G~A~~~i~~~~~--~~~~Y~-~a~~~L~~~yg~ 69 (145)
T PF03564_consen 21 ENPDLSDIEKLNYLRSCLKGEAKELIRGLPL--SEENYE-EAWELLEERYGN 69 (145)
T ss_pred cccCCCHHHHHHHHHHHhcchHHHHHHcccc--cchhhH-HHHHHHHHHhCC
Confidence 3456889999999999999976555555554 233343 567889999965
No 94
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=22.49 E-value=90 Score=26.22 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC---CCCCCHHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLA 50 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K---~~~~~~~~Rl~Ml~la 50 (205)
||+.+++.|++.. .+.+|-.|+.|.-=+|.. +..-+.+.=+++|+.+
T Consensus 36 GHlsLi~~A~~~~---d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~ 85 (280)
T PF02569_consen 36 GHLSLIRRARAEN---DVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA 85 (280)
T ss_dssp HHHHHHHHHHHHS---SEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC---CEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc
Confidence 8999999999876 344555566775434332 2345556667777654
No 95
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=22.34 E-value=50 Score=25.61 Aligned_cols=14 Identities=29% Similarity=0.233 Sum_probs=11.8
Q ss_pred CccchHHHHHHHHc
Q 028685 164 NQISSTRIRDCICR 177 (205)
Q Consensus 164 ~~ISST~IR~~~~~ 177 (205)
..+|||.|||-++.
T Consensus 83 ~f~SSTlikQTvRs 96 (192)
T PF11868_consen 83 LFLSSTLIKQTVRS 96 (192)
T ss_pred EEeeHHHHHHHHHH
Confidence 46899999998875
No 96
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=21.50 E-value=1.1e+02 Score=26.03 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHH--------Hc-----CCCCeeeChhhhcCCCccchHHHHHHHHHHhhhhccccCCCceEEEEEccchh
Q 028685 39 SAEHRINLCNLA--------CK-----SSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLL 105 (205)
Q Consensus 39 ~~~~Rl~Ml~la--------~~-----~~~~~~v~~~E~~~~~~syT~dtl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~ 105 (205)
+.+.|++|++.. ++ +...+-+|..=....+..-|+++++.+|++++ +-..+|.=|+
T Consensus 161 t~e~Rl~i~~~~~~~~~~gll~~a~~~GI~diliDplVlpvs~~~~tl~aI~~iK~~~G-----------~pt~~GlSNi 229 (308)
T PRK00979 161 SVEGRLKMLEEGGKGQDKGMLPLAEEAGIERPLVDTAVTPLPGSGAAIRAIFAVKAKFG-----------YPVGCAPHNA 229 (308)
T ss_pred CHHHHHHHHHhccccchHHHHHHHHHcCCCcEEeccCCCcCccHHHHHHHHHHHHHHcC-----------CCeEEEEeCC
Confidence 899999999972 32 24456666544444556678999999999883 5677887777
Q ss_pred hc
Q 028685 106 ES 107 (205)
Q Consensus 106 ~~ 107 (205)
..
T Consensus 230 S~ 231 (308)
T PRK00979 230 PS 231 (308)
T ss_pred ch
Confidence 44
No 97
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=20.96 E-value=1.1e+02 Score=24.75 Aligned_cols=30 Identities=13% Similarity=0.352 Sum_probs=24.0
Q ss_pred CccchHHHHHHHHcCCCCCccChHHHHHHHHhC
Q 028685 164 NQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 196 (205)
Q Consensus 164 ~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~ 196 (205)
-.|++|++|+++.+ ..+.|++.+.+.|.+.
T Consensus 139 G~I~~sEL~~Al~~---~Gy~Lspq~~~~lv~k 168 (221)
T KOG0037|consen 139 GTIDSSELRQALTQ---LGYRLSPQFYNLLVRK 168 (221)
T ss_pred CcccHHHHHHHHHH---cCcCCCHHHHHHHHHH
Confidence 47999999999964 3477899999888754
Done!