Query 028685
Match_columns 205
No_of_seqs 176 out of 1145
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 01:55:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nup_A FKSG76; NAD biosynthesi 100.0 1.8E-45 6.1E-50 301.2 19.6 202 1-202 21-236 (252)
2 1kqn_A Nmnat, nicotinamide mon 100.0 2.7E-45 9.2E-50 303.8 16.7 201 1-201 23-256 (279)
3 1yum_A 'probable nicotinate-nu 100.0 3.5E-42 1.2E-46 280.0 17.3 182 1-202 38-233 (242)
4 3h05_A Uncharacterized protein 100.0 2.8E-43 9.6E-48 273.7 8.5 153 1-203 17-174 (177)
5 2h29_A Probable nicotinate-nuc 100.0 4.2E-41 1.4E-45 264.3 13.0 170 1-200 17-188 (189)
6 1k4m_A NAMN adenylyltransferas 100.0 4.1E-40 1.4E-44 263.2 17.4 181 1-200 18-213 (213)
7 1kam_A Deamido-NAD(+), nicotin 100.0 3.8E-39 1.3E-43 254.1 15.9 170 1-200 22-193 (194)
8 2qtr_A Nicotinate (nicotinamid 100.0 2E-38 6.9E-43 248.7 14.8 170 1-200 17-188 (189)
9 3nd5_A Phosphopantetheine aden 99.9 9E-28 3.1E-32 185.2 7.5 145 1-201 17-163 (171)
10 3f3m_A Phosphopantetheine aden 99.9 2.2E-26 7.6E-31 176.9 9.6 139 1-196 18-158 (168)
11 1vlh_A Phosphopantetheine aden 99.9 3.6E-26 1.2E-30 176.8 4.2 141 1-197 27-168 (173)
12 1o6b_A Phosphopantetheine aden 99.9 1.4E-25 4.7E-30 172.7 5.7 146 1-202 17-163 (169)
13 3nbk_A Phosphopantetheine aden 99.9 9.2E-24 3.2E-28 162.9 8.2 140 1-196 36-175 (177)
14 1qjc_A Phosphopantetheine aden 99.9 8.5E-24 2.9E-28 160.7 7.0 140 1-196 16-156 (158)
15 1od6_A PPAT, phosphopantethein 99.9 2.8E-23 9.4E-28 158.3 7.1 140 1-196 15-157 (160)
16 1jhd_A Sulfate adenylyltransfe 99.9 1.1E-21 3.9E-26 168.5 10.3 161 1-196 207-390 (396)
17 1ej2_A Nicotinamide mononucleo 99.9 2E-22 6.7E-27 156.8 3.7 143 1-200 18-164 (181)
18 1v47_A ATP sulfurylase; produc 99.8 3.2E-21 1.1E-25 163.4 10.0 160 1-196 170-348 (349)
19 4f3r_A Phosphopantetheine aden 99.8 2.4E-21 8.3E-26 148.0 5.2 139 1-196 20-159 (162)
20 1f9a_A Hypothetical protein MJ 99.8 4.1E-21 1.4E-25 147.7 6.0 139 1-200 15-158 (168)
21 3k9w_A Phosphopantetheine aden 99.8 1.1E-20 3.8E-25 147.4 7.0 140 1-196 37-177 (187)
22 3nv7_A Phosphopantetheine aden 99.8 4.4E-20 1.5E-24 140.2 -0.4 139 1-195 17-156 (157)
23 2qjo_A Bifunctional NMN adenyl 99.7 1.2E-18 4E-23 147.1 4.7 143 1-198 22-173 (341)
24 2qjt_B Nicotinamide-nucleotide 99.6 3.5E-15 1.2E-19 126.4 7.4 145 1-196 22-176 (352)
25 2b7l_A Glycerol-3-phosphate cy 99.3 7.6E-13 2.6E-17 97.2 4.7 115 1-179 16-130 (132)
26 1coz_A Protein (glycerol-3-pho 99.2 6.4E-12 2.2E-16 91.8 4.0 80 1-104 16-95 (129)
27 1lw7_A Transcriptional regulat 99.1 1E-11 3.5E-16 105.8 0.3 58 1-65 17-84 (365)
28 1r6x_A ATP:sulfate adenylyltra 98.6 2.2E-07 7.7E-12 79.5 11.1 161 1-200 202-388 (395)
29 1g8f_A Sulfate adenylyltransfe 98.4 1.3E-06 4.3E-11 77.6 10.2 158 1-195 203-386 (511)
30 3do8_A Phosphopantetheine aden 98.4 1.7E-07 5.9E-12 70.0 3.0 57 1-63 15-76 (148)
31 3glv_A Lipopolysaccharide core 98.0 1.7E-06 5.7E-11 64.1 2.1 53 1-60 17-72 (143)
32 3hl4_A Choline-phosphate cytid 97.9 1.5E-05 5E-10 63.6 6.2 53 1-59 91-147 (236)
33 2x0k_A Riboflavin biosynthesis 97.7 5.8E-05 2E-09 63.6 6.7 137 1-179 30-175 (338)
34 3op1_A Macrolide-efflux protei 97.4 0.002 6.9E-08 53.4 11.3 88 1-104 35-132 (308)
35 1mrz_A Riboflavin kinase/FMN a 97.3 0.00019 6.3E-09 59.3 4.6 126 1-179 14-148 (293)
36 3gmi_A UPF0348 protein MJ0951; 97.1 0.0031 1E-07 53.3 9.9 32 165-196 226-259 (357)
37 3elb_A Ethanolamine-phosphate 96.5 0.0062 2.1E-07 51.1 6.9 53 1-58 22-75 (341)
38 3elb_A Ethanolamine-phosphate 95.3 0.0049 1.7E-07 51.8 1.5 51 1-60 213-272 (341)
39 2gks_A Bifunctional SAT/APS ki 95.2 0.13 4.6E-06 45.7 10.3 162 1-195 178-363 (546)
40 1m8p_A Sulfate adenylyltransfe 93.3 1 3.5E-05 40.2 11.9 163 1-195 205-387 (573)
41 1x6v_B Bifunctional 3'-phospho 91.8 1.1 3.9E-05 40.5 10.2 162 1-195 427-616 (630)
42 3cr8_A Sulfate adenylyltranfer 91.4 0.84 2.9E-05 40.6 8.8 163 1-195 178-360 (552)
43 1v8f_A Pantoate-beta-alanine l 46.2 22 0.00076 28.6 4.3 47 1-50 31-80 (276)
44 2ejc_A Pantoate--beta-alanine 45.3 17 0.00057 29.4 3.4 47 1-50 36-85 (280)
45 1xou_A ESPA; coiled coil, heli 38.5 6.6 0.00023 29.5 0.0 19 181-199 99-119 (192)
46 3inn_A Pantothenate synthetase 37.5 36 0.0012 27.9 4.2 47 1-50 57-106 (314)
47 3ag6_A Pantothenate synthetase 36.8 33 0.0011 27.6 3.9 47 1-50 37-86 (283)
48 3uk2_A Pantothenate synthetase 36.0 23 0.0008 28.6 2.9 47 1-50 36-85 (283)
49 1v31_A Hypothetical protein RA 34.3 13 0.00045 24.6 1.0 20 182-201 29-48 (93)
50 1v32_A AT5G08430, hypothetical 29.8 20 0.00067 24.3 1.3 19 183-201 38-56 (101)
51 3cov_A Pantothenate synthetase 29.2 33 0.0011 27.9 2.7 47 1-50 47-97 (301)
52 1uhr_A SWI/SNF related, matrix 27.3 26 0.00088 23.2 1.5 18 184-201 31-48 (93)
53 4e38_A Keto-hydroxyglutarate-a 25.4 40 0.0014 26.3 2.5 120 39-195 44-167 (232)
54 3tvz_A Putative uncharacterize 25.2 34 0.0012 25.2 2.0 30 72-109 15-44 (172)
No 1
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=100.00 E-value=1.8e-45 Score=301.23 Aligned_cols=202 Identities=40% Similarity=0.732 Sum_probs=165.9
Q ss_pred CcHHHHHHHHHHhccCCe-EEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGY-CVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRV 79 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v-~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l 79 (205)
||+.+++.|.+.+++++. .+|+..++|++.+|+|+..+++++|++|+++|++++|+|.|++||+.+.+++||++||+++
T Consensus 21 GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~m~~~ai~~~~~~~v~~~E~~~~~~syTidtL~~l 100 (252)
T 1nup_A 21 MHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRVDPWESEQAQWMETVKVLRHH 100 (252)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSSSCCCCHHHHHHHHHHHGGGCSSEEECCHHHHSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCceEEEEEEeCCCCcccCCCCCCHHHHHHHHHHHhcCCCceEeehHHhcCCCCCCHHHHHHHH
Confidence 899999999999998862 3333356788888888888999999999999999999999999999999999999999999
Q ss_pred HHHhhh---------hc----cccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhh
Q 028685 80 KNFLIE---------AG----LISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNE 146 (205)
Q Consensus 80 ~~~~~~---------~~----~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~ 146 (205)
+++|.. .+ +.|+.+.+++||||+|++.+|++|++|+++++++|++.|+|+|+.|+|.+......+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~fiiGaD~l~~l~~p~~W~~~~~~~i~~~~~lvv~~R~g~~~~~~~~~~~ 180 (252)
T 1nup_A 101 HSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVSHDPKGYIAESP 180 (252)
T ss_dssp HHHHC--------------------CCCEEEEEEEHHHHHHTTSTTTSCHHHHHHHHHHTCEEEECCTTCCHHHHHHHCH
T ss_pred HHHHhhccccccccccccccccCCCCCceEEEEEecchHhHCCCcCccCcchHHHHHhhCcEEEEECCCCChHHhhhhHH
Confidence 999910 00 00111148999999999999999999998445899999999999999988654322223
Q ss_pred hhhhcCCcEEEEcCCCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCCCC
Q 028685 147 ILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNS 202 (205)
Q Consensus 147 ~l~~~~~~i~~~~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~~~ 202 (205)
.+..+.++|++++.....+||||.||++++.|++++++||++|++||++|+||+..
T Consensus 181 ~l~~~~~~i~~~~~~~~~~ISST~IR~~~~~g~~i~~lvP~~V~~yI~~~~LY~~~ 236 (252)
T 1nup_A 181 ILRMHQHNIHLAKEPVQNEISATYIRRALGQGQSVKYLIPDAVITYIKDHGLYTKG 236 (252)
T ss_dssp HHHHTGGGEEEECCCSCCCCCHHHHHHHHHTTCCCBTTBCHHHHHHHHHTTCSCC-
T ss_pred HHHhcCCCEEEEcCCCCCccCHHHHHHHHHcCCCchhcCCHHHHHHHHHcCCcCCC
Confidence 34444568999863235799999999999999999999999999999999999864
No 2
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=100.00 E-value=2.7e-45 Score=303.80 Aligned_cols=201 Identities=45% Similarity=0.784 Sum_probs=165.7
Q ss_pred CcHHHHHHHHHHhccCCe-EEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGY-CVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRV 79 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v-~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l 79 (205)
||+.|++.|++.+++|+. .++.+.|+|++.+|+|+..+++++|++|+++|+++.+++.|++||+.+.+++||++||++|
T Consensus 23 GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~~~~~K~~l~s~~~R~~ml~~ai~~~~~~~v~~~E~~~~~~syTidtL~~l 102 (279)
T 1kqn_A 23 MHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAYHRVIMAELATKNSKWVEVDTWESLQKEWKETLKVLRHH 102 (279)
T ss_dssp HHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGGCCTTCCCHHHHHHHHHHHTTTCSSEEECCTGGGCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCceEEEEEEcCCCCCccccCCCCHHHHHHHHHHHhcCCCcEEEeccccccCCCCcHHHHHHHH
Confidence 899999999999998862 2322346788888888778999999999999999999999999999999999999999999
Q ss_pred HHHhhhhc--------------------------------cccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhccc
Q 028685 80 KNFLIEAG--------------------------------LISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFG 127 (205)
Q Consensus 80 ~~~~~~~~--------------------------------~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~ 127 (205)
+++|...+ +.|+.+.+++||||+|++.+|++|+.|+++++++|++.|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~GaD~l~~~~~p~~W~~~~~e~il~~~~ 182 (279)
T 1kqn_A 103 QEKLEASDCDHQQNSPTLERPGRKRKWTETQDSSQKKSLEPKTKAVPKVKLLCGADLLESFAVPNLWKSEDITQIVANYG 182 (279)
T ss_dssp HHHHTC--------------------------------------CCCEEEEEEEHHHHHHTTSTTTSCHHHHHHHHHHTC
T ss_pred HHHHhhcccccccccccccccccccccccccccccccccccCCCCCccEEEEEehhhHhhCcCccccCcchHHHHHhhCc
Confidence 99991000 0011114899999999999999999999854589999999
Q ss_pred EEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcCCCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCCC
Q 028685 128 VICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLN 201 (205)
Q Consensus 128 ~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~~ 201 (205)
|+|+.|+|++........+.+.++..+|++++.....+||||+||+++++|++++++||++|++||++|+||+.
T Consensus 183 lvv~~R~g~~~~~~~~~~~~l~~~~~~i~~v~~~~~~~ISST~IR~~l~~g~si~~lvP~~V~~YI~~~~LY~~ 256 (279)
T 1kqn_A 183 LICVTRAGNDAQKFIYESDVLWKHRSNIHVVNEWIANDISSTKIRRALRRGQSIRYLVPDLVQEYIEKHNLYSS 256 (279)
T ss_dssp EEEEESCHHHHHHHHHTCHHHHHTGGGEEEEECCSCCCCCHHHHHHHHHTTCCCBTTBCHHHHHHHHHHTCCSH
T ss_pred EEEEeCCCCChHhhhhhHHHHhhcCCcEEEECCCCCCccCHHHHHHHHHcCCChhhcCCHHHHHHHHHcCCcCC
Confidence 99999998765433323334555567899986333589999999999999999999999999999999999974
No 3
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=100.00 E-value=3.5e-42 Score=280.03 Aligned_cols=182 Identities=20% Similarity=0.315 Sum_probs=154.8
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC-CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRV 79 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~-~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l 79 (205)
||+.+++.|.+.+++|+|+|+| +.++|+|+ ..+++++|++|+++|+++.+++.|+++|++++|++||++|++++
T Consensus 38 GHl~li~~a~~~~~ld~v~v~~-----~~~~p~K~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~~~sytvdtl~~l 112 (242)
T 1yum_A 38 GHMRSAVEMAEQFALDELRLLP-----NARPPHRETPQVSAAQRLAMVERAVAGVERLTVDPRELQRDKPSYTIDTLESV 112 (242)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEE-----CCCCGGGSCTTCCHHHHHHHHHHHHTTCTTEEECCGGGGSSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEE-----cCCCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEeeeeecCCCCCCHHHHHHHH
Confidence 8999999999999999998864 55556775 58999999999999999999999999999999999999999999
Q ss_pred HHHh-hhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhH---hhh--hh-------
Q 028685 80 KNFL-IEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKI---ISD--NE------- 146 (205)
Q Consensus 80 ~~~~-~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~---~~~--~~------- 146 (205)
+++| |+ .++|||||+|++.+|++|+.| ++|++.|+|+|++|+ +...+. ... ..
T Consensus 113 ~~~~~p~--------~~~~fI~G~D~l~~l~~W~~~-----~~i~~~~~~vv~~R~-~~~~~~~~e~~~~~~~~~~~~~~ 178 (242)
T 1yum_A 113 RAELAAD--------DQLFMLIGWDAFCGLPTWHRW-----EALLDHCHIVVLQRP-DADSEPPESLRDLLAARSVADPQ 178 (242)
T ss_dssp HHHSCTT--------CEEEEEEEHHHHTTGGGSTTG-----GGSTTTCEEEEEECS-SSCCCCCGGGHHHHHHHBCSCGG
T ss_pred HHHhCCC--------CcEEEEEehhHhhhhhhhcCH-----HHHHhhCcEEEEECC-CchhhhhHHHHHHHHHhhccchh
Confidence 9999 76 389999999999999987776 899999999999998 321110 000 00
Q ss_pred hhhhcCCcEEEEcCCCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCCCC
Q 028685 147 ILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNS 202 (205)
Q Consensus 147 ~l~~~~~~i~~~~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~~~ 202 (205)
.+....++|++++ .+..+||||+||++++.|++++++||++|.+||++|+||+.+
T Consensus 179 ~L~~~~~~i~~~~-~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yI~~~~LY~~~ 233 (242)
T 1yum_A 179 ALKGPGGQITFVW-QTPLAVSATQIRALLGAGRSVRFLVPDAVLNYIEAHHLYRAP 233 (242)
T ss_dssp GCCSSSCCEEEEE-CCCCSCCHHHHHHHHHTTCCCBTTBCHHHHHHHHHTTTTCCC
T ss_pred hhccCCCeEEEec-CCCCcCcHHHHHHHHHcCCChhHcCCHHHHHHHHHhCCcCCC
Confidence 1111234798886 577899999999999999999999999999999999999864
No 4
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=100.00 E-value=2.8e-43 Score=273.72 Aligned_cols=153 Identities=18% Similarity=0.173 Sum_probs=123.5
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCC--CeeeChhhhc--CCC-ccchHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD--FIMVDPWEAN--QSG-YQRTLTV 75 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~--~~~v~~~E~~--~~~-~syT~dt 75 (205)
||+.+|+ |.+.+ |+|+|+| ++++|.|+..+++++|++|+++|+++++ +++|+++|.+ ++| +|||+||
T Consensus 17 GHl~i~~-a~~~~--d~v~~~p-----~~~~~~k~~~~~~~~R~~m~~~a~~~~~~~~~~v~~~E~~l~~~~~~syT~dT 88 (177)
T 3h05_A 17 GHKSVIE-SLSHF--DLVLLEP-----SIAHAWGKNMLDYPIRCKLVDAFIKDMGLSNVQRSDLEQALYQPGQSVTTYAL 88 (177)
T ss_dssp HHHHHHT-TCTTS--SEEEEEE-----CC-------CCCHHHHHHHHHHHHHHHCCTTEEECCHHHHHC----CCCHHHH
T ss_pred HHHHHHH-HHHHC--CEEEEEE-----CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEehhhhcccCCCCcchHHH
Confidence 8999998 77766 9999875 4445567778999999999999999875 8999999987 666 9999999
Q ss_pred HHHHHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcE
Q 028685 76 LSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNI 155 (205)
Q Consensus 76 l~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i 155 (205)
|++|++.||+ .+++||||+|++.+|++|++| ++|++.|+++|++|
T Consensus 89 l~~l~~~~p~--------~~~~~iiG~D~l~~l~~W~~~-----~~l~~~~~~vv~~r---------------------- 133 (177)
T 3h05_A 89 LEKIQEIYPT--------ADITFVIGPDNFFKFAKFYKA-----EEITERWTVMACPE---------------------- 133 (177)
T ss_dssp HHHHHHHSTT--------SEEEEEECHHHHHTGGGSTTH-----HHHHHHSEEEECCC----------------------
T ss_pred HHHHHHHhcC--------CCeEEEEecchhhhcccchhH-----HHHHHhCCEEEEcC----------------------
Confidence 9999999986 389999999999999987776 99999999999876
Q ss_pred EEEcCCCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCCCCC
Q 028685 156 KLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNSN 203 (205)
Q Consensus 156 ~~~~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~~~~ 203 (205)
..+||||+||+++++|++++++||++|.+||++|+||+.++
T Consensus 134 -------~~~iSST~IR~~i~~g~~~~~lvp~~V~~yI~~~~LY~~~~ 174 (177)
T 3h05_A 134 -------KVKIRSTDIRNALIEGKDISTYTTPTVSELLLNEGLYRETL 174 (177)
T ss_dssp -------SSCCCHHHHHHHHHHTCCCTTTSCHHHHHHHHC--------
T ss_pred -------CCCCcHHHHHHHHHcCCChhHhCCHHHHHHHHHcCCCCCcc
Confidence 23899999999999999999999999999999999998764
No 5
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=100.00 E-value=4.2e-41 Score=264.28 Aligned_cols=170 Identities=18% Similarity=0.233 Sum_probs=151.8
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC--CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSR 78 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~--~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~ 78 (205)
||+.+++.|.+.+++|+++++ |+.++++|. ..+++++|++|+++|+++.|++.|+++|++++|++||++|+++
T Consensus 17 GH~~l~~~a~~~~~~d~v~~~-----~~~~~~~k~~~~~~~~~~R~~m~~~a~~~~~~v~v~~~e~~~~~~syt~dtl~~ 91 (189)
T 2h29_A 17 AHMIVASEVFHELQPDEFYFL-----PSFMSPLKKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKA 91 (189)
T ss_dssp HHHHHHHHHHHHHCCSEEEEE-----ECSBCTTSCCCSSCCCHHHHHHHHHHHHHHTCCEECCHHHHHCSBCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEE-----ECCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCEEEehHHhcCCCCCCHHHHHHH
Confidence 899999999999999998875 556666774 4789999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEE
Q 028685 79 VKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLV 158 (205)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~ 158 (205)
++++||+ .+++||+|+|++.+|+.|+.| ++|++.++++|++|+++... ...+++++
T Consensus 92 l~~~~p~--------~~~~~i~G~D~~~~~~~W~~~-----~~i~~~~~~~v~~R~~~~~~-----------~~~~i~~~ 147 (189)
T 2h29_A 92 FKEQHKD--------SELYFVIGTDQYNQLEKWYQI-----EYLKEMVTFVVVNRDKNSQN-----------VENAMIAI 147 (189)
T ss_dssp HHHHSTT--------EEEEEEEEHHHHTTGGGSTTH-----HHHHHHCEEEEECCSSSCCC-----------CCTTSEEE
T ss_pred HHHHCCC--------CcEEEEEecchhhhhccccCH-----HHHHhhCcEEEEECCCCccc-----------cCCcEEEE
Confidence 9999986 389999999999999976555 89999999999999986521 13467788
Q ss_pred cCCCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCC
Q 028685 159 DELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYL 200 (205)
Q Consensus 159 ~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~ 200 (205)
+ .+..+||||.||+.++.|++++++||++|.+||++|+||+
T Consensus 148 ~-~~~~~ISST~IR~~i~~g~~~~~lvP~~V~~yI~~~~LY~ 188 (189)
T 2h29_A 148 Q-IPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYE 188 (189)
T ss_dssp C-CCCBCCCHHHHHHHHHTTCCCBTTBCHHHHHHHHHHTTTC
T ss_pred c-CCCCccCHHHHHHHHHcCCChhhcCCHHHHHHHHHhCCcc
Confidence 6 5678999999999999999999999999999999999997
No 6
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=100.00 E-value=4.1e-40 Score=263.22 Aligned_cols=181 Identities=24% Similarity=0.249 Sum_probs=154.1
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC-CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRV 79 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~-~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l 79 (205)
||+.+++.|.+.+++|+++++ |+.++|+|. ..+++++|++|+++|+++.+++.|+++|.++.+++||++|++++
T Consensus 18 GH~~l~~~a~~~~~~d~v~~~-----~~~~~~~k~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~~~s~t~~~l~~l 92 (213)
T 1k4m_A 18 GHLKPVETLANLIGLTRVTII-----PNNVPPHRPQPEANSVQRKHMLELAIADKPLFTLDERELKRNAPSYTAQTLKEW 92 (213)
T ss_dssp HHHHHHHHHHHHHTCSCEEEE-----ECSSCTTSCCCSSCHHHHHHHHHHHHTTCTTEEECCHHHHCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEE-----ECCCCCCCCCCCCCHHHHHHHHHHHhccCCCEEEeHHHhcCCCCCcHHHHHHHH
Confidence 899999999999999999876 455566775 68999999999999999999999999999999999999999999
Q ss_pred HHHh-hhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhh---Hhh---h------hh
Q 028685 80 KNFL-IEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEK---IIS---D------NE 146 (205)
Q Consensus 80 ~~~~-~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~---~~~---~------~~ 146 (205)
++.| |+ .+++||+|.|++.+|++|++| ++|++.|+|+|++|+|.+... ... . .+
T Consensus 93 ~~~~~~~--------~~~~~i~G~D~~~~l~~W~~~-----~~i~~~~~~vv~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (213)
T 1k4m_A 93 RQEQGPD--------VPLAFIIGQDSLLTFPTWYEY-----ETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPE 159 (213)
T ss_dssp HHHHCTT--------SCEEEEEEHHHHHHGGGSTTH-----HHHHHHCEEEEECCTTCCSSCSSHHHHHHHHHHBCSCTT
T ss_pred HHHhCCC--------CcEEEEEehhhhhhhhccCCH-----HHHHhhCcEEEEECCCCchhhhhhHHHHHHhhhhcchhh
Confidence 9986 54 389999999999999976666 899999999999999975211 000 0 00
Q ss_pred hhhh-cCCcEEEEcCCCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCC
Q 028685 147 ILDK-NKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYL 200 (205)
Q Consensus 147 ~l~~-~~~~i~~~~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~ 200 (205)
.+.. ..++|++++ .+..+||||.||++++.|++++++||++|.+||++|+||+
T Consensus 160 ~l~~~~~~~i~~~~-~~~~~iSST~IR~~i~~g~~i~~lvP~~V~~yI~~~~LY~ 213 (213)
T 1k4m_A 160 DLHLQPAGKIYLAE-TPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLYR 213 (213)
T ss_dssp HHHHSSSCCEEEEC-CCCCCCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHHTTTC
T ss_pred hhhhccCCeEEEEe-CCcccCCHHHHHHHHHcCCCchhcCCHHHHHHHHHcCCCC
Confidence 1111 234788886 5778999999999999999999999999999999999995
No 7
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=100.00 E-value=3.8e-39 Score=254.13 Aligned_cols=170 Identities=22% Similarity=0.277 Sum_probs=145.9
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC--CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSR 78 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~--~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~ 78 (205)
||+.+++.|.+.+++|+++++| +..+|+|. ..+++++|++|+++|+++.+++.|+++|+++.+++||++|+++
T Consensus 22 GH~~l~~~a~~~~~~d~v~~~~-----~~~~~~k~~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~~~~~t~~~l~~ 96 (194)
T 1kam_A 22 GHLLMANEVLYQAGLDEIWFMP-----NQIPPHKQNEDYTDSFHRVEMLKLAIQSNPSFKLELVEMEREGPSYTFDTVSL 96 (194)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEE-----CCCC---------CHHHHHHHHHHHHTTCTTEEECCGGGSTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEE-----CCCCCCcCCcCCCCHHHHHHHHHHHHcCCCCeEEeHHHhcCCCCCChHHHHHH
Confidence 8999999999999999988865 44456773 5799999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEE
Q 028685 79 VKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLV 158 (205)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~ 158 (205)
++++||+. +++||+|.|++.+|++ |+++ ++|++.++++|++|+|.... + +.++.++
T Consensus 97 l~~~~p~~--------~~~~v~G~D~~~~~~~---W~~~--e~i~~~~~~~v~~R~g~~~~--------l---~~~i~~~ 152 (194)
T 1kam_A 97 LKQRYPND--------QLFFIIGADMIEYLPK---WYKL--DELLNLIQFIGVKRPGFHVE--------T---PYPLLFA 152 (194)
T ss_dssp HHHHSTTS--------EEEEEEETTTTTTCCC---CHHH--HHHHHHSEEEEEECSSCCCC--------C---SSCCEEE
T ss_pred HHHHCCCC--------cEEEEEecchhhhhcc---ccCH--HHHHHhCcEEEEECCCcchh--------c---CCCEEEe
Confidence 99999863 8999999999999995 5554 89999999999999986420 1 2467788
Q ss_pred cCCCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCC
Q 028685 159 DELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYL 200 (205)
Q Consensus 159 ~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~ 200 (205)
+ .+..+||||.||++++.|++++++||++|.+||++|+||+
T Consensus 153 ~-~~~~~ISST~IR~~i~~g~~~~~lvP~~V~~yI~~~~LY~ 193 (194)
T 1kam_A 153 D-VPEFEVSSTMIRERFKSKKPTDYLIPDKVKKYVEENGLYE 193 (194)
T ss_dssp E-CCCBCCCHHHHHHHHHHTCCCTTTSCHHHHHHHHHTTCSC
T ss_pred C-CCCCCcCHHHHHHHHHcCCCchhhCCHHHHHHHHHcCCcc
Confidence 6 4667999999999999999999999999999999999997
No 8
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=100.00 E-value=2e-38 Score=248.65 Aligned_cols=170 Identities=20% Similarity=0.233 Sum_probs=149.3
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC--CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSR 78 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~--~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~ 78 (205)
||+.+++.|.+.+++|+++++ |+..+|+|. ..+++++|++|+++|+++.+++.|+++|.++.+++||++|+++
T Consensus 17 GH~~li~~a~~~~~~d~v~~~-----~~~~~~~k~~~~~~~~~~R~~ml~~~~~~~~~v~v~~~e~~~~~~~~~~~~l~~ 91 (189)
T 2qtr_A 17 GHLLIANEVYHALNLEEVWFL-----PNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQ 91 (189)
T ss_dssp HHHC-CHHHHHHTTCSEEEEE-----ECSSCTTCTTSCCCCHHHHHHHHHHHHTTCTTEEECCTGGGSCSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEE-----ECCCCCCccCCCCCCHHHHHHHHHHHhCCCCCEEEehHHhcCCCCCCHHHHHHH
Confidence 899999999999999999876 444556773 5899999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEE
Q 028685 79 VKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLV 158 (205)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~ 158 (205)
++.+||+ .+++||+|.|++.++..|+.| ++|++.++++|++|+|.... ...++.++
T Consensus 92 l~~~~p~--------~~~~~v~G~D~~~~~~~w~~~-----~~l~~~~~~~v~~r~~~~~~-----------~~~~v~~~ 147 (189)
T 2qtr_A 92 LTKKYPD--------VQFHFIIGGDMVEYLPKWYNI-----EALLDLVTFVGVARPGYKLR-----------TPYPITTV 147 (189)
T ss_dssp HHHHCTT--------CEEEEEEEHHHHHHGGGSTTH-----HHHTTTCEEEEECCTTCCCC-----------CSSCCEEE
T ss_pred HHHHCCC--------CCEEEEEehhhhhhhhccCCH-----HHHHHhCCEEEEECCCCCcc-----------CCceEEEE
Confidence 9999986 389999999999999965555 89999999999999986421 01267777
Q ss_pred cCCCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCC
Q 028685 159 DELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYL 200 (205)
Q Consensus 159 ~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~ 200 (205)
+ .+..+||||.||+++++|++++++||++|.+||++|+||+
T Consensus 148 ~-~~~~~iSST~IR~~l~~g~~~~~lvP~~V~~yI~~~~lY~ 188 (189)
T 2qtr_A 148 E-IPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYE 188 (189)
T ss_dssp C-CCCCCCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHTTGGG
T ss_pred c-CCCCccCHHHHHHHHHcCCCchhcCCHHHHHHHHHcCCcC
Confidence 5 5667999999999999999999999999999999999997
No 9
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=99.94 E-value=9e-28 Score=185.19 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=108.7
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeee-ChhhhcCCCccchHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMV-DPWEANQSGYQRTLTVLSRV 79 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v-~~~E~~~~~~syT~dtl~~l 79 (205)
||+.+++.|.+.+ |+|+|+|+ .+|+|+..++.++|++|+++|+++.|+++| +++| +||+||++.+
T Consensus 17 GHl~i~~~a~~~~--D~viv~v~------~~~~K~~~~~~~~R~~ml~~a~~~~~~v~v~~~~e------~~tvd~~~~l 82 (171)
T 3nd5_A 17 GHLNLIERSAKLF--DEVIIGVF------INTSKQTLFTPEEKKYLIEEATKEMPNVRVIMQET------QLTVESAKSL 82 (171)
T ss_dssp HHHHHHHHHHTTC--SEEEEEEE------C------CCCHHHHHHHHHHHHTTCTTEEEEEECS------SCHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CCeEEEEe------cCCCCCCCCCHHHHHHHHHHHHccCCCEEEeeCCC------CcHHHHHHHC
Confidence 8999999999998 99988752 345787889999999999999999999999 9888 5999998866
Q ss_pred HHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEc
Q 028685 80 KNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVD 159 (205)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~ 159 (205)
+. + +||+|.|++.+|+ ..++.+.+ +|. +....+++++++
T Consensus 83 ~~-------------~-~~i~G~~~~~d~~-----------~e~~la~~---nr~-------------l~~~~etv~l~~ 121 (171)
T 3nd5_A 83 GA-------------N-FLIRGIRNVKDYE-----------YEKDIAKM---NQH-------------LAPEIETVFLLA 121 (171)
T ss_dssp TC-------------C-EEEEEECSHHHHH-----------HHHHHHHH---HHH-------------HCTTSEEEEEEC
T ss_pred CC-------------C-EEEECCCchhhhH-----------HHHHHHHH---hhh-------------hcCCccEEEEeC
Confidence 31 2 8999999876643 34444443 442 111125788876
Q ss_pred CCCC-CccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCCC
Q 028685 160 ELVP-NQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLN 201 (205)
Q Consensus 160 ~~~~-~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~~ 201 (205)
.+. .+||||.||+.++.|++++++||++|.+||++++||-+
T Consensus 122 -~~~~~~ISST~IRe~~~~g~~i~~lVP~~V~~~i~~~~~y~~ 163 (171)
T 3nd5_A 122 -EEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHALKQKKNDWS 163 (171)
T ss_dssp -CGGGTTCCHHHHHHHHHTTCCCGGGSCHHHHHHHHHC-----
T ss_pred -CccccccchHHHHHHHHcCCChhHhCCHHHHHHHHHhhcccc
Confidence 455 49999999999999999999999999999999999953
No 10
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=99.93 E-value=2.2e-26 Score=176.92 Aligned_cols=139 Identities=17% Similarity=0.228 Sum_probs=108.0
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||+.+++.|.+.+ |+|+|+|+ . +|+|+..++.++|++|+++|+++.|++.|+++| +||+||++.++
T Consensus 18 GHl~i~~~a~~~~--d~viv~v~-----~-~p~K~~~~~~~~R~~ml~~a~~~~~~v~v~~~e------~~tvd~~~~l~ 83 (168)
T 3f3m_A 18 GHLDIIERSTDRF--DEIHVCVL-----K-NSKKEGTFSLEERMDLIEQSVKHLPNVKVHQFS------GLLVDYCEQVG 83 (168)
T ss_dssp HHHHHHHHHGGGS--SEEEEEEC-----C------CCSCHHHHHHHHHHHTTTCTTEEEEECC------SCHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--CEEEEEEc-----C-CCCCCCCCCHHHHHHhHHHHhcCCCCEEEEEcC------CCHHHHHHHcC
Confidence 8999999999998 99998753 2 457778899999999999999999999999998 39999998763
Q ss_pred HHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHH-HHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEc
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVW-TICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVD 159 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e-~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~ 159 (205)
. -+||+|.|++.+|. | + ++.. ++|. +....++|++++
T Consensus 84 ~--------------~~~I~G~d~~~d~~----~-----e~~~a~------~~r~-------------l~~~~e~v~l~~ 121 (168)
T 3f3m_A 84 A--------------KTIIRGLRAVSDFE----Y-----ELRLTS------MNKK-------------LNNEIETLYMMS 121 (168)
T ss_dssp C--------------CEEEEEECTTCCHH----H-----HHHHHH------HHHH-------------HCTTSEEEEEEC
T ss_pred C--------------CEEEEcCCchhhhh----H-----HHHHhH------HhHh-------------hCCCCcEEEEeC
Confidence 2 37999999986644 3 3 2222 2331 111124688886
Q ss_pred CCCCCc-cchHHHHHHHHcCCCCCccChHHHHHHHHhC
Q 028685 160 ELVPNQ-ISSTRIRDCICRGLSIKYLTEDKVIDYIRES 196 (205)
Q Consensus 160 ~~~~~~-ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~ 196 (205)
.+..+ ||||.||+.++.|++++++||++|.+||+++
T Consensus 122 -~p~~~~ISST~IRe~~~~g~~i~~lvP~~V~~~i~~~ 158 (168)
T 3f3m_A 122 -STNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKK 158 (168)
T ss_dssp -CTTTTTCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHH
T ss_pred -CcccccccHHHHHHHHHcCCChhHHCCHHHHHHHHHh
Confidence 57666 9999999999999999999999999999976
No 11
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=99.92 E-value=3.6e-26 Score=176.82 Aligned_cols=141 Identities=16% Similarity=0.127 Sum_probs=111.0
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||+.+++.|.+.+ |+|+|+|+. ++ .|+..+++++|++|+++|+++.+++.|+++| + ||++|+++++
T Consensus 27 GHl~l~~~A~~~~--D~viv~v~~-----~~-~kk~~~~~~~R~~ml~~a~~~~~~v~v~~~e----~--~tvd~l~~l~ 92 (173)
T 1vlh_A 27 GHVDIIKRALSIF--DELVVLVTE-----NP-RKKCMFTLEERKKLIEEVLSDLDGVKVDVHH----G--LLVDYLKKHG 92 (173)
T ss_dssp HHHHHHHHHHTTC--SEEEEEEEC-----CT-TCCCSSCHHHHHHHHHHHTTTCTTEEEEEEC----S--CHHHHHHHHT
T ss_pred HHHHHHHHHHHHC--CEEEEEEeC-----CC-CCCCCCCHHHHHHHHHHHhcCCCCEEEecCc----c--hHHHHHHHhC
Confidence 8999999999998 999987533 33 4557899999999999999999999999998 3 9999998774
Q ss_pred HHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcC
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE 160 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~ 160 (205)
. + +||.| |.+|+.| +.++ ++++++|++... ...++++.
T Consensus 93 ~-------------~-~~i~g------l~~w~d~-----~~~~---~~~~~~r~~~~~-------------~~~i~l~~- 130 (173)
T 1vlh_A 93 I-------------K-VLVRG------LRAVTDY-----EYEL---QMALANKKLYSD-------------LETVFLIA- 130 (173)
T ss_dssp C-------------C-EEEEE------ECTTSCH-----HHHH---HHHHHHHHHSTT-------------CEEEEEEC-
T ss_pred C-------------C-eEEeC------CCcccch-----hhcc---chhhcCCCCCCC-------------CcEEEEeC-
Confidence 3 2 36654 5665555 5655 566778865320 13566665
Q ss_pred CCCCc-cchHHHHHHHHcCCCCCccChHHHHHHHHhCC
Q 028685 161 LVPNQ-ISSTRIRDCICRGLSIKYLTEDKVIDYIRESR 197 (205)
Q Consensus 161 ~~~~~-ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~ 197 (205)
.+..+ ||||.||+.++.|++++++||++|.+||+++.
T Consensus 131 ~~~~~~iSST~IR~~i~~g~~i~~lvP~~V~~yI~~~~ 168 (173)
T 1vlh_A 131 SEKFSFISSSLVKEVALYGGDVTEWVPPEVARALNEKL 168 (173)
T ss_dssp CGGGTTCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHHT
T ss_pred CCCCCceeHHHHHHHHHcCCChhHcCCHHHHHHHHHHH
Confidence 45545 99999999999999999999999999999873
No 12
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=99.91 E-value=1.4e-25 Score=172.71 Aligned_cols=146 Identities=16% Similarity=0.114 Sum_probs=111.3
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||+.+++.|.+.+ |+++++| +. +|.|+..++.++|++|+++|+++.+++.|+++| +||++|++.++
T Consensus 17 GH~~li~~a~~~~--d~v~v~~-----~~-~p~k~~l~~~~~R~~ml~~a~~~~~~v~v~~~e------~~~~~~l~~l~ 82 (169)
T 1o6b_A 17 GHLDIIKRGAHIF--EQVYVCV-----LN-NSSKKPLFSVEERCELLREVTKDIPNITVETSQ------GLLIDYARRKN 82 (169)
T ss_dssp HHHHHHHHHHHHS--SEEEEEE-----CC-CCSSCCSSCHHHHHHHHHHHHTTCTTEEEEECS------SCHHHHHHHTT
T ss_pred HHHHHHHHHHHhC--CEEEEEE-----CC-CCccCCCCCHHHHHHHHHHHHhcCCCEEEcccc------hHHHHHHHHcC
Confidence 8999999999998 8888765 32 246667899999999999999999999999988 59999876543
Q ss_pred HHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcC
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE 160 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~ 160 (205)
+ + +|++|.|.+.++. .... +++++|.+.. ..+.+.++.
T Consensus 83 ---~----------~-~~i~G~d~~~~~~-----------~~~~---~~~~~r~~~~-------------~~~~i~~~~- 120 (169)
T 1o6b_A 83 ---A----------K-AILRGLRAVSDFE-----------YEMQ---GTSVNRVLDE-------------SIETFFMMA- 120 (169)
T ss_dssp ---C----------S-EEEEEECSGGGHH-----------HHHH---HHHHHHHHCT-------------TSEEEEEEC-
T ss_pred ---C----------C-EEEEcCccccchH-----------HHHH---HHHHhccccC-------------CCCEEEEEC-
Confidence 1 2 7999999876543 1111 2233443210 012455554
Q ss_pred CCC-CccchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCCCC
Q 028685 161 LVP-NQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNS 202 (205)
Q Consensus 161 ~~~-~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~~~ 202 (205)
.+. .+||||.||+.+++|++++++||++|.+||++++||+.+
T Consensus 121 ~~~~~~ISST~IR~~l~~G~~~~~~vP~~V~~yi~~~~ly~~~ 163 (169)
T 1o6b_A 121 NNQYSFLSSSIVKEVARYDGSVSEFVPPEVELALQQKFRQGGS 163 (169)
T ss_dssp CSTTTTCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHHHHSCSC
T ss_pred CCCCCcCcHHHHHHHHHcCCChhHHCCHHHHHHHHHhhCcCCC
Confidence 343 479999999999999999999999999999999999864
No 13
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=99.89 E-value=9.2e-24 Score=162.94 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=109.2
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||+.+++.|.+.+ |+|+|+| +. +|+|+..++.++|++|+++|+++.|+++|++|| .||+|+++.+.
T Consensus 36 GHl~ii~~A~~~~--D~Viv~v-----~~-np~K~~~~s~eeR~~mv~~a~~~~~~v~V~~~e------~l~vd~~~~~~ 101 (177)
T 3nbk_A 36 GHVDIFERAAAQF--DEVVVAI-----LV-NPAKTGMFDLDERIAMVKESTTHLPNLRVQVGH------GLVVDFVRSCG 101 (177)
T ss_dssp HHHHHHHHHHHHS--SEEEEEE-----CC-CTTSCCSSCHHHHHHHHHHHCTTCTTEEEEECC------SCHHHHHHHTT
T ss_pred HHHHHHHHHHHHC--CEEEEEE-----cC-CCCCCCCCCHHHHHHHHHHHhCCCCCEEEEecC------chHHHHHHHcC
Confidence 8999999999998 9999874 32 357888999999999999999999999999988 38999877532
Q ss_pred HHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcC
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE 160 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~ 160 (205)
.-++|.|.|++.+|+ ..++.+.+ +|. + ...++++++..
T Consensus 102 --------------a~~ivrGlr~~~Dfe-----------ye~~~a~~---nr~-------------l-~~ietvfl~~~ 139 (177)
T 3nbk_A 102 --------------MTAIVKGLRTGTDFE-----------YELQMAQM---NKH-------------I-AGVDTFFVATA 139 (177)
T ss_dssp --------------CCEEEEEECTTCCHH-----------HHHHHHHH---HHH-------------H-HCCEEEEEECC
T ss_pred --------------CCEEEECCCchhHHH-----------HHHHHHHH---HHh-------------c-CCCceEEEeCC
Confidence 237888888765544 33333332 331 2 22357877753
Q ss_pred CCCCccchHHHHHHHHcCCCCCccChHHHHHHHHhC
Q 028685 161 LVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 196 (205)
Q Consensus 161 ~~~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~ 196 (205)
.....||||.||+.++.|++++++||++|.+||+++
T Consensus 140 ~~~~~ISST~IRe~~~~ggdv~~lVP~~V~~~l~~~ 175 (177)
T 3nbk_A 140 PRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRDR 175 (177)
T ss_dssp GGGSSCCHHHHHHHHHTTCCCGGGSCHHHHHHHHHH
T ss_pred CcccccchHHHHHHHHcCCChhHhCCHHHHHHHHHH
Confidence 334699999999999999999999999999999874
No 14
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=99.89 E-value=8.5e-24 Score=160.71 Aligned_cols=140 Identities=12% Similarity=0.077 Sum_probs=104.6
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||+.+++.|.+.+ |+++++|++ . |+|+..+++++|++|+++|+++.+++.|+++| +||++|+++++
T Consensus 16 GH~~l~~~a~~~~--d~v~v~~~~-~-----p~k~~~~~~~~R~~ml~~a~~~~~~v~v~~~~------~~~~~~l~~l~ 81 (158)
T 1qjc_A 16 GHIDIVTRATQMF--DHVILAIAA-S-----PSKKPMFTLEERVALAQQATAHLGNVEVVGFS------DLMANFARNQH 81 (158)
T ss_dssp HHHHHHHHHHTTS--SEEEEEEES-C-----CSSCCSSCHHHHHHHHHHHTTTCTTEEEEEEC------SCHHHHHHHTT
T ss_pred HHHHHHHHHHHhC--CEEEEEECC-C-----CCCCCCCCHHHHHHHHHHHHhcCCCeEEcccc------hHHHHHHHHcC
Confidence 8999999999988 889887654 2 35667899999999999999999999999998 38888876542
Q ss_pred HHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcC
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE 160 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~ 160 (205)
+ + +|++|.|.+ ..| +.+.+.+ +++|.... ....+.+++
T Consensus 82 ---~----------~-~~v~G~d~~------~~~-----~~~~~~~---~~~r~~~~-------------~~~~i~~~~- 119 (158)
T 1qjc_A 82 ---A----------T-VLIRGLRAV------ADF-----EYEMQLA---HMNRHLMP-------------ELESVFLMP- 119 (158)
T ss_dssp ---C----------C-EEEEECCTT------CCH-----HHHHHHH---HHHHHHCT-------------TSEEEEECC-
T ss_pred ---C----------C-EEEEeccch------hhh-----HHHHHHH---HhCccCCC-------------CCCEEEEEC-
Confidence 2 3 899998743 334 3333322 12332110 112455554
Q ss_pred CCC-CccchHHHHHHHHcCCCCCccChHHHHHHHHhC
Q 028685 161 LVP-NQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 196 (205)
Q Consensus 161 ~~~-~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~ 196 (205)
.+. ..||||.||+++++|++++++||++|.+||++|
T Consensus 120 ~~~~~~iSST~IR~~i~~g~~~~~~vP~~V~~yI~~~ 156 (158)
T 1qjc_A 120 SKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAK 156 (158)
T ss_dssp CGGGTTCCHHHHHHHHHTTCCCGGGSCHHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHcCCChhHhCCHHHHHHHHHh
Confidence 344 479999999999999999999999999999986
No 15
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=99.88 E-value=2.8e-23 Score=158.26 Aligned_cols=140 Identities=17% Similarity=0.134 Sum_probs=102.9
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC--CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSR 78 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~--~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~ 78 (205)
||+.+++.|.+.+ |+++++|+ .. |+|+ ..+++++|++|+++|+++.+++.|+++| + ||++|+++
T Consensus 15 GH~~l~~~a~~~~--d~v~v~~~-~~-----p~k~~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e----~--~~~~~l~~ 80 (160)
T 1od6_A 15 GHLDVIQRASRLF--EKVTVAVL-EN-----PSKRGQYLFSAEERLAIIREATAHLANVEAATFS----G--LLVDFVRR 80 (160)
T ss_dssp HHHHHHHHHHHHS--SEEEEEEE-CC----------CCSSCHHHHHHHHHHHTTTCTTEEEEEEC----S--CHHHHHHH
T ss_pred HHHHHHHHHHHHC--CEEEEEEc-CC-----CCCCCCCCCCHHHHHHHHHHHhcCCCCEEEEecC----c--hHHHHHHH
Confidence 8999999999988 88888764 22 3564 5899999999999999999999999998 2 99998865
Q ss_pred HHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEE
Q 028685 79 VKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLV 158 (205)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~ 158 (205)
++. + +|++|.| .|+.| +.+...+ +++|.+.. ....+.++
T Consensus 81 l~~-------------~-~~v~G~d------~~~~~-----~~~~~~~---~~~r~~~~-------------~~~~i~~~ 119 (160)
T 1od6_A 81 VGA-------------Q-AIVKGLR------AVSDY-----EYELQMA---HLNRQLYP-------------GLETLFIL 119 (160)
T ss_dssp TTC-------------S-EEEEEEC------TTSCH-----HHHHHHH---HHHHHHTT-------------TCEEEEEE
T ss_pred cCC-------------C-EEEEeCC------cccch-----HHHHHHH---HhCcCCCC-------------CCCEEEEe
Confidence 431 2 7899987 44445 4443321 23332110 01245555
Q ss_pred cCCCC-CccchHHHHHHHHcCCCCCccChHHHHHHHHhC
Q 028685 159 DELVP-NQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 196 (205)
Q Consensus 159 ~~~~~-~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~ 196 (205)
. .+. .+||||.||+++++|++++++||++|.+||++|
T Consensus 120 ~-~~~~~~ISST~IR~~l~~G~~~~~~vP~~V~~~I~~~ 157 (160)
T 1od6_A 120 A-ATRYSFVSSTMVKEIARYGGDVSKLVPPATLRALKAK 157 (160)
T ss_dssp C-CGGGTTCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHH
T ss_pred C-CCCCCcccHHHHHHHHHcCCChhHHCCHHHHHHHHHH
Confidence 4 443 589999999999999999999999999999987
No 16
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=99.86 E-value=1.1e-21 Score=168.50 Aligned_cols=161 Identities=14% Similarity=0.143 Sum_probs=126.3
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCC-CC----eeeChhhhcCCCccchHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS-DF----IMVDPWEANQSGYQRTLTV 75 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~-~~----~~v~~~E~~~~~~syT~dt 75 (205)
||+.+++.|++.+++|+|+++|. .. |+|...++.++|++|++++++++ |. +.+.++|....|++||+
T Consensus 207 gH~~l~~~Ale~~~~D~vll~P~-----~g-~~K~~di~~~~R~~~~~~~~~~~~p~~~v~l~~~p~~m~~aGPreai-- 278 (396)
T 1jhd_A 207 AHEELCRMAMESLDADGVVVHML-----LG-KLKKGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYGFDMLYAGPREAV-- 278 (396)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEE-----EC-CCCTTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEECCCCCCTHHHHH--
T ss_pred HHHHHHHHHHHHcCCCeEEEEEC-----CC-CCCCCCCCHHHHHHHHHHHHHhcCCCcceEEEechHHhhcCCchHHH--
Confidence 79999999999999999998753 33 36777899999999999999984 76 88889999999999987
Q ss_pred HHH-HHHHhhhhccccCCCceEEEEEccchh--hcCCCCCCCChhhHHHHhhc--------ccEEEEeCCCCChhhHhhh
Q 028685 76 LSR-VKNFLIEAGLISTESLKVMLVCGSDLL--ESFAIPGFWMPEQVWTICRN--------FGVICIRREGQDVEKIISD 144 (205)
Q Consensus 76 l~~-l~~~~~~~~~~~~~~~~~~fiiG~D~~--~~l~~w~~W~~~~~e~l~~~--------~~~iv~~R~~~~~~~~~~~ 144 (205)
+.. +++.| + +. +||+|.|.. .+|. .|+++ ++|++. +.++++.|.++...
T Consensus 279 lhaiirkn~-G--------~t-~fIVGrDhag~~~~y---~~~~a--q~il~~~~~~~~l~i~iv~~~~~~Y~~~----- 338 (396)
T 1jhd_A 279 LHAYFRQNM-G--------AT-HFIIGRDHAGVGDYY---GAFDA--QTIFDDEVPEGAMEIEIFRADHTAYSKK----- 338 (396)
T ss_dssp HHHHHHHHT-T--------CS-EEEECTTTTCCTTCS---CTTHH--HHHHHHTSCTTSCSCEEEECCCEEEETT-----
T ss_pred HHHHHHHcC-C--------Cc-EEEECCCCCCccccC---CcchH--HHHHHhcccccccceeEEecccceecCC-----
Confidence 333 44544 3 35 999999997 6666 57766 899885 68899999765321
Q ss_pred hhhhhhcCCcEEEEcC------CCCCccchHHHHHHHHcCC-CCCccChHHHHHHHHhC
Q 028685 145 NEILDKNKGNIKLVDE------LVPNQISSTRIRDCICRGL-SIKYLTEDKVIDYIRES 196 (205)
Q Consensus 145 ~~~l~~~~~~i~~~~~------~~~~~ISST~IR~~~~~g~-~i~~~vp~~V~~yI~~~ 196 (205)
...+..++. .+..+||||+||+++++|+ .+..++|++|.+||+++
T Consensus 339 -------~~~~~~~~~~p~~~~~~~~~ISgT~IR~~L~~G~~pP~~f~~peV~~~I~~~ 390 (396)
T 1jhd_A 339 -------LNKIVMMRDVPDHTKEDFVLLSGTKVREMLGQGIAPPPEFSRPEVAKILMDY 390 (396)
T ss_dssp -------TTEEEEGGGCTTCCGGGEECCCHHHHHHHHHTTCCCCTTTCCHHHHHHHHHH
T ss_pred -------CCeEEEccccCcccCCCccccCHHHHHHHHHCCCCCCcccCCHHHHHHHHHh
Confidence 123434321 2236899999999999998 45889999999999884
No 17
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=99.85 E-value=2e-22 Score=156.82 Aligned_cols=143 Identities=12% Similarity=0.121 Sum_probs=108.4
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC-CCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-GLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRV 79 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~-~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l 79 (205)
||+.+++.|.+.+ |+++++ +|+.++|+|+ ..++.++|++|++.|+++.+ +
T Consensus 18 GH~~l~~~a~~~~--d~v~v~----v~~~~~p~~~~~~~~~~~R~~~~~~a~~~~~-~---------------------- 68 (181)
T 1ej2_A 18 GHLQVIKSILEEV--DELIIC----IGSAQLSHSIRDPFTAGERVMMLTKALSENG-I---------------------- 68 (181)
T ss_dssp HHHHHHHHHTTTC--SEEEEE----ECSTTCCSSSSSCSCHHHHHHHHHHHHHHTT-C----------------------
T ss_pred HHHHHHHHHHHhC--CeeEEE----ECCCCCCcCCCCCCCHHHHHHHHHHHHhhCC-C----------------------
Confidence 8999999999985 888774 2555566664 57899999999999999876 3
Q ss_pred HHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEc
Q 028685 80 KNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVD 159 (205)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~ 159 (205)
+. +.++++|.|.+..... |.+. ++++...+++++++|++. .. .+.. .++.++.
T Consensus 69 ----~~---------~~v~v~~~d~~~~~~~---w~~~-~~~l~~~~~~~v~gr~~~--~~------~~~~--~~i~~~~ 121 (181)
T 1ej2_A 69 ----PA---------SRYYIIPVQDIECNAL---WVGH-IKMLTPPFDRVYSGNPLV--QR------LFSE--DGYEVTA 121 (181)
T ss_dssp ----CG---------GGEEEEECCCCSCHHH---HHHH-HHHHSCCCSEEECCCHHH--HH------HHHH--TTCCEEC
T ss_pred ----CC---------CcEEEEecCccCCHHH---HHHH-HHHHCCCCCEEEECCHHH--HH------HHHh--CCeEEEe
Confidence 11 3588999998877764 5442 467788899999998641 11 1111 1343443
Q ss_pred CCCCCc---cchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCC
Q 028685 160 ELVPNQ---ISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYL 200 (205)
Q Consensus 160 ~~~~~~---ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~ 200 (205)
.+..+ ||||.||+.+++|++++++||++|.+||++|+||.
T Consensus 122 -~~~~~~~~ISST~IR~~l~~G~~i~~lvP~~V~~yI~~~~l~~ 164 (181)
T 1ej2_A 122 -PPLFYRDRYSGTEVRRRMLDDGDWRSLLPESVVEVIDEINGVE 164 (181)
T ss_dssp -CCCSSTTTSSHHHHHHHHHHTCCCGGGSCHHHHHHHHHTTHHH
T ss_pred -cCCCccCcCcHHHHHHHHHcCCChhHhCCHHHHHHHHHcCChH
Confidence 34445 99999999999999999999999999999999994
No 18
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=99.84 E-value=3.2e-21 Score=163.45 Aligned_cols=160 Identities=14% Similarity=0.092 Sum_probs=125.2
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCC-CC----eeeChhhhcCCCccchHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS-DF----IMVDPWEANQSGYQRTLTV 75 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~-~~----~~v~~~E~~~~~~syT~dt 75 (205)
||+.|++.|++. +|+|+++| ...+ +|...++.++|++|++++++++ |. +.+.++|....|++||+
T Consensus 170 gH~~l~~~ale~--~d~vll~P-----~~g~-~K~~d~~~~~R~~~~~~~i~~~~p~~~~~l~~~p~~m~~aGPreai-- 239 (349)
T 1v47_A 170 AHEYLIRLGLEL--ADGVLVHP-----ILGA-KKPDDFPTEVIVEAYQALIRDFLPQERVAFFGLATPMRYAGPKEAV-- 239 (349)
T ss_dssp HHHHHHHHHHHH--SSEEEEEE-----BCSC-CCTTSCCHHHHHHHHHHHHHHHSCGGGEEECCBCSCCCCCTHHHHH--
T ss_pred HHHHHHHHHHHh--CCcEEEEE-----CCCC-CCCCCCCHHHHHHHHHHHHhhcCCCcceEEEechHHhhcCCcHHHH--
Confidence 799999999997 59998865 4333 6777899999999999999996 87 77889999999999985
Q ss_pred HHHHHHHhhhhccccCCCceEEEEEccchh--hcCCCCCCCChhhHHHHhhcc-----cEEEEeCCCCChhhHhhhhhhh
Q 028685 76 LSRVKNFLIEAGLISTESLKVMLVCGSDLL--ESFAIPGFWMPEQVWTICRNF-----GVICIRREGQDVEKIISDNEIL 148 (205)
Q Consensus 76 l~~l~~~~~~~~~~~~~~~~~~fiiG~D~~--~~l~~w~~W~~~~~e~l~~~~-----~~iv~~R~~~~~~~~~~~~~~l 148 (205)
+..+.+++++ +. +||+|.|.. .+|. .|+++ ++|++.+ .++++.|.++...
T Consensus 240 lhaiirkn~G--------~t-~fIVGrDhag~~~~y---~~~~a--q~i~~~~~~l~i~~v~~~~~~Y~~~--------- 296 (349)
T 1v47_A 240 FHALVRKNFG--------AT-HFLVGRDHAGVGDFY---DPYAA--HRIFDRLPPLGIEIVKVGAVFHCPL--------- 296 (349)
T ss_dssp HHHHHHHHTT--------CS-EEEECTTTTCSTTCS---CTTHH--HHGGGGSCCCSSEEEECCCEEEETT---------
T ss_pred HHHHHHHcCC--------Cc-EEEECcCCCCccccc---CcccH--HHHHHhhhhcCceEEeccccEEccc---------
Confidence 6665544443 34 999999997 6555 67776 8999997 7888888765321
Q ss_pred hhcCCcEEEEcC------CCCCccchHHHHHHHHcCCC-CCccChHHHHHHHHhC
Q 028685 149 DKNKGNIKLVDE------LVPNQISSTRIRDCICRGLS-IKYLTEDKVIDYIRES 196 (205)
Q Consensus 149 ~~~~~~i~~~~~------~~~~~ISST~IR~~~~~g~~-i~~~vp~~V~~yI~~~ 196 (205)
.+.+..++. .+..+||||+||+++++|+. +..++|++|.+||++.
T Consensus 297 ---~~~~~~~~~~p~~~~~~~~~ISgT~iR~~L~~G~~pp~~f~~peV~~~I~~~ 348 (349)
T 1v47_A 297 ---CGGIASERTCPEGHREKRTAISMTKVRALLREGKAPPSELVRPELLPILRRG 348 (349)
T ss_dssp ---TTEEEETTTSCGGGGGGCEECCHHHHHHHHHTTCCCCTTTSCGGGHHHHHTT
T ss_pred ---CCceEEccccCccCCCcccccCHHHHHHHHHCcCCCchhcCCHHHHHHHHhh
Confidence 123434321 22478999999999999984 5799999999999873
No 19
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=99.83 E-value=2.4e-21 Score=148.01 Aligned_cols=139 Identities=16% Similarity=0.152 Sum_probs=99.1
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||+.+++.|.+.+ |+++++++ .+|+|+..++.++|++|+++++++ +++.|++|| + +|+++++.+
T Consensus 20 GHl~li~~A~~~~--d~viv~v~------~~~~K~~~~~~~~R~~m~~~~~~~-~~v~V~~~~----~--l~~~~~~~~- 83 (162)
T 4f3r_A 20 GHVDIIERALPLF--NKIIVACA------PTSRKDPHLKLEERVNLIADVLTD-ERVEVLPLT----G--LLVDFAKTH- 83 (162)
T ss_dssp HHHHHHHHHGGGC--SEEEEEEC------CC------CCHHHHHHHHHHHCCC-TTEEEEECC----S--CHHHHHHHT-
T ss_pred HHHHHHHHHHHHC--CcEEEEEe------cCCccCCCCCHHHHHHHHHHhhCC-CCEEEEecc----c--hHHHHHHHc-
Confidence 8999999999998 89888643 245787889999999999999999 999999887 2 666665432
Q ss_pred HHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcC
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE 160 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~ 160 (205)
.+ -+|++|.|++.+|. + +.-+.. ++|. +....+++++..
T Consensus 84 --~~-----------~~~v~G~r~~~Df~----~-----e~~~a~-----~nr~-------------l~~~ietv~l~~- 122 (162)
T 4f3r_A 84 --QA-----------NFILRGLRAVSDFD----Y-----EFQLAH-----MNYQ-------------LSPEIETIFLPA- 122 (162)
T ss_dssp --TC-----------CEEEEEECSHHHHH----H-----HHHHHH-----HHHH-------------HCTTCEEEEEEC-
T ss_pred --CC-----------CEEEECCCchhhhh----h-----HHHHHH-----HHHH-------------hCCCccEEEEEC-
Confidence 22 38999999998877 3 211111 1221 211234677775
Q ss_pred CCC-CccchHHHHHHHHcCCCCCccChHHHHHHHHhC
Q 028685 161 LVP-NQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 196 (205)
Q Consensus 161 ~~~-~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~ 196 (205)
.+. ..||||.||+.++.|++++++||+.|.+||+++
T Consensus 123 ~~~~~~ISST~IRe~~~~g~~i~~~VP~~V~~~l~~~ 159 (162)
T 4f3r_A 123 REGYSYVSGTMVREIVTLGGDVSPFVPPLVARHLQKR 159 (162)
T ss_dssp CGGGSSCCHHHHHHHHHTTCCCTTTSCHHHHHHC---
T ss_pred CcccccccHHHHHHHHHcCCChhHhCCHHHHHHHHHH
Confidence 343 699999999999999999999999999999875
No 20
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=99.83 E-value=4.1e-21 Score=147.65 Aligned_cols=139 Identities=15% Similarity=0.132 Sum_probs=99.2
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCC-CCCCHHHHHHHHHHHHcCCC-CeeeChhhhcCCCccchHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-GLISAEHRINLCNLACKSSD-FIMVDPWEANQSGYQRTLTVLSR 78 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~-~~~~~~~Rl~Ml~la~~~~~-~~~v~~~E~~~~~~syT~dtl~~ 78 (205)
||+.+++.|.+.+ |+++++ +|++++|+|+ ..++.++|++|+++++++++ ++.+
T Consensus 15 GH~~l~~~a~~~~--d~v~v~----v~~~~~p~~~~~~~~~~~R~~m~~~~~~~~~~~v~v------------------- 69 (168)
T 1f9a_A 15 GHLEVIKKIAEEV--DEIIIG----IGSAQKSHTLENPFTAGERILMITQSLKDYDLTYYP------------------- 69 (168)
T ss_dssp HHHHHHHHHTTTC--SEEEEE----ECSTTCCSSSSCCSCHHHHHHHHHHHHTTSSCEEEE-------------------
T ss_pred HHHHHHHHHHHhC--CeEEEE----EcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCceEE-------------------
Confidence 8999999999985 888874 3566666665 57899999999999999886 3321
Q ss_pred HHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEE
Q 028685 79 VKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLV 158 (205)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~ 158 (205)
.+.|++..+. .|.++ ++++...+++++++|++. .. .+.. .++.++
T Consensus 70 ---------------------~~~d~l~~~~---~w~~~-~~~~~~~~~~~~~~~~~~--~~------~~~~--~~i~~~ 114 (168)
T 1f9a_A 70 ---------------------IPIKDIEFNS---IWVSY-VESLTPPFDIVYSGNPLV--RV------LFEE--RGYEVK 114 (168)
T ss_dssp ---------------------EECCCCSCGG---GHHHH-HHHHSCCCSEEECCCHHH--HH------HHHH--TTCEEE
T ss_pred ---------------------EeeCCcccHH---HHHHH-HHHhccCCCEEEECcHHH--HH------hhhh--cCcEEE
Confidence 2223333334 35442 356666778887776431 11 1111 245566
Q ss_pred cCCCCCc---cchHHHHHHHHcCCCCCccChHHHHHHHHhCCCCC
Q 028685 159 DELVPNQ---ISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYL 200 (205)
Q Consensus 159 ~~~~~~~---ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~~LY~ 200 (205)
. .+..+ ||||+||+.++.|++++++||++|.+||++|+||.
T Consensus 115 ~-~~~~~~~~ISST~IR~~~~~g~~i~~lvP~~V~~yI~~~~l~~ 158 (168)
T 1f9a_A 115 R-PEMFNRKEYSGTEIRRRMLNGEKWEHLVPKAVVDVIKEIKGVE 158 (168)
T ss_dssp C-CCCCSTTTSSHHHHHHHHHHTCCCGGGSCHHHHHHHHHHTHHH
T ss_pred e-CCccccCcccHHHHHHHHHcCCChhHcCCHHHHHHHHHcCChH
Confidence 4 45555 99999999999999999999999999999999873
No 21
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=99.82 E-value=1.1e-20 Score=147.39 Aligned_cols=140 Identities=16% Similarity=0.108 Sum_probs=106.1
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||+.+++.|.+.+ |+++++++ .+|.|+.+++.++|++|++.++++.+++.|++|+ .||+++++.+
T Consensus 37 GHl~li~~A~~~~--d~viv~v~------~~p~K~~l~s~eeR~~ml~~~~~~v~~v~v~~f~------~~~~d~l~~l- 101 (187)
T 3k9w_A 37 GHEDLVRRASSIF--DTLVVGVA------DSRAKKPFFSLEERLKIANEVLGHYPNVKVMGFT------GLLKDFVRAN- 101 (187)
T ss_dssp HHHHHHHHHHHHS--SEEEEEEE------CCGGGCCSSCHHHHHHHHHHHHTTCTTEEEEEES------SCHHHHHHHT-
T ss_pred HHHHHHHHHHHHC--CcEEEEEe------cCCccCCCCCHHHHHHHHHHHhccCCcEEEEech------hhHHHHHHHc-
Confidence 8999999999998 88887642 1357778999999999999999999999999886 3777776533
Q ss_pred HHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcC
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE 160 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~ 160 (205)
. .-++|+|.|++.+|. + |.-+.. ++|. +....+.+++..
T Consensus 102 --~-----------~~~iv~G~r~~~Df~----~-----E~~la~-----~nr~-------------l~~~ietv~l~~- 140 (187)
T 3k9w_A 102 --D-----------ARVIVRGLRAVSDFE----Y-----EFQMAG-----MNRY-------------LLPDVETMFMTP- 140 (187)
T ss_dssp --T-----------CSEEEEECCTTSCHH----H-----HHHHHH-----HHHH-------------HCTTCEEEEECC-
T ss_pred --C-----------CCEEEECCCcccccc----h-----HHHHHH-----HHHH-------------hCCCCcEEEEec-
Confidence 2 238999999887766 3 332211 1221 111224566654
Q ss_pred CC-CCccchHHHHHHHHcCCCCCccChHHHHHHHHhC
Q 028685 161 LV-PNQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 196 (205)
Q Consensus 161 ~~-~~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~~ 196 (205)
.+ ...||||.||+.++.|++++++||+.|.+||+++
T Consensus 141 ~~~~~~ISST~IRe~~~~g~~i~~lVP~~V~~~i~~k 177 (187)
T 3k9w_A 141 SDQYQFISGTIVREIAQLGGDVSKFVFPSVEKWLTEK 177 (187)
T ss_dssp CGGGTTCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHcCCChhHHCCHHHHHHHHHH
Confidence 34 3799999999999999999999999999999875
No 22
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=99.76 E-value=4.4e-20 Score=140.20 Aligned_cols=139 Identities=18% Similarity=0.235 Sum_probs=102.4
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||+.+++.|.+.+ |++++.+ +.+|+|+..++.++|++|++.++++.+++.|++++ + . ++..++
T Consensus 17 GHl~ii~~A~~~~--D~viv~v------~~~~~K~~~~~~~eR~~ml~~a~~~~~~v~v~~~~----~--l---~~~~~~ 79 (157)
T 3nv7_A 17 GHIDIIHRSSELF--EKLIVAV------AHSSAKNPMFSLDERLKMIQLATKSFKNVECVAFE----G--L---LAYLAK 79 (157)
T ss_dssp HHHHHHHHHHTTS--SEEEEEE------ECCGGGCCSSCHHHHHHHHHHHHTTSTTEEEEEEC----S--C---HHHHHH
T ss_pred HHHHHHHHHHHhC--CceEEEE------ccCCCCCCCCCHHHHHHHHHHHhcCCCcEEEEecC----c--h---HHHHHH
Confidence 8999999999998 8888753 33457888899999999999999999999998875 2 3 344454
Q ss_pred HHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcC
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE 160 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~ 160 (205)
+..+ -+++.|.++..+|. | |.-+. .++|. |....+++++..
T Consensus 80 ~~~~-----------~~ivrG~r~~~D~~----y-----e~~~a-----~~n~~-------------l~~~ietv~l~~- 120 (157)
T 3nv7_A 80 EYHC-----------KVLVRGLRVVSDFE----Y-----ELQMG-----YANKS-------------LNHELETLYFMP- 120 (157)
T ss_dssp HTTC-----------CCBCCCCSCCCCHH----H-----HHHHH-----HHHHH-------------SSCCCCCCCCCC-
T ss_pred HcCC-----------CEEEECCcccchhh----h-----hHHHH-----HHHHH-------------hCCCceEEEEcC-
Confidence 5443 37999999887766 4 32111 12221 211124565553
Q ss_pred CCC-CccchHHHHHHHHcCCCCCccChHHHHHHHHh
Q 028685 161 LVP-NQISSTRIRDCICRGLSIKYLTEDKVIDYIRE 195 (205)
Q Consensus 161 ~~~-~~ISST~IR~~~~~g~~i~~~vp~~V~~yI~~ 195 (205)
.+. ..||||.||+.++.|++++++||+.|.++|++
T Consensus 121 ~~~~~~iSSt~vRe~~~~ggdv~~~VP~~V~~~l~~ 156 (157)
T 3nv7_A 121 TLQNAFISSSIVRSIIAHKGDASHLVPKEIYPLISK 156 (157)
T ss_dssp CHHHHTCCHHHHHHHHHTTCCCTTTSCTTTHHHHCC
T ss_pred CcccceeeHHHHHHHHHcCCChHHhCCHHHHHHHhh
Confidence 232 58999999999999999999999999999865
No 23
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.73 E-value=1.2e-18 Score=147.12 Aligned_cols=143 Identities=17% Similarity=0.115 Sum_probs=102.9
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC-CCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK-RGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRV 79 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K-~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l 79 (205)
||+.+++.|++.+ |+++++ +|++++|+| +..+++++|++|+++++++.+
T Consensus 22 GH~~li~~a~~~~--d~v~v~----v~~~~~p~~~~~~~~~~~R~~m~~~~~~~~~------------------------ 71 (341)
T 2qjo_A 22 GHLRTLNLALEKA--EQVIII----LGSHRVAADTRNPWRSPERMAMIEACLSPQI------------------------ 71 (341)
T ss_dssp HHHHHHHHHHHHE--EEEEEE----EEEETCCCCSSSCSCHHHHHHHHHTTSCHHH------------------------
T ss_pred HHHHHHHHHHHhC--CeEEEE----ECCcccCCCCCCCCCHHHHHHHHHHHhhhcc------------------------
Confidence 8999999999998 888762 234444454 467999999999999876543
Q ss_pred HHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhc-----ccEEEEeCCCCChhhHhhhhhhhhhcCCc
Q 028685 80 KNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRN-----FGVICIRREGQDVEKIISDNEILDKNKGN 154 (205)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~-----~~~iv~~R~~~~~~~~~~~~~~l~~~~~~ 154 (205)
. + +++|++|.|.+.++.+|+.| .+++++. ++++++.++...... ..+...+
T Consensus 72 ---~-~---------~~~~i~~~d~~~~~~~w~~~----~~~l~~~l~r~~~~~~~~g~~~~~~~~-------~~~~~~~ 127 (341)
T 2qjo_A 72 ---L-K---------RVHFLTVRDWLYSDNLWLAA----VQQQVLKITGGSNSVVVLGHRKDASSY-------YLNLFPQ 127 (341)
T ss_dssp ---H-T---------TEEEEEEECCTTCHHHHHHH----HHHHHHHHHTTCSCEEEEECCCSGGGG-------GGGSCTT
T ss_pred ---C-C---------eEEEEECCCCcCChHHHHHH----HHHHhHHhcCCCceEEEEcCCCCCChH-------HHHhccc
Confidence 1 1 69999999998888865444 2456655 678888765421111 1111123
Q ss_pred EEEEcCCC-CCccchHHHHHHHHcCCCCCc--cChHHHHHHHHhCCC
Q 028685 155 IKLVDELV-PNQISSTRIRDCICRGLSIKY--LTEDKVIDYIRESRL 198 (205)
Q Consensus 155 i~~~~~~~-~~~ISST~IR~~~~~g~~i~~--~vp~~V~~yI~~~~L 198 (205)
+..+. .+ ..+||||.||+.+++|+++.+ +||++|.+||.++++
T Consensus 128 ~~~~~-~~~~~~iSST~IR~~l~~g~~~~~~~lvp~~v~~~i~~~~~ 173 (341)
T 2qjo_A 128 WDYLE-TGHYPDFSSTAIRGAYFEGKEGDYLDKVPPAIADYLQTFQK 173 (341)
T ss_dssp SEEEE-CCCCTTCCHHHHHHHHHHTCGGGTTTTSCHHHHHHHHHHTT
T ss_pred cceee-cccCCCCCcHHHHHHHHcCCCcchhhhCCHHHHHHHHHhcc
Confidence 44443 34 579999999999999998777 999999999998865
No 24
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.56 E-value=3.5e-15 Score=126.40 Aligned_cols=145 Identities=8% Similarity=0.001 Sum_probs=98.4
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC-CCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK-RGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRV 79 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K-~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l 79 (205)
||+.+++.|.+.+ |+++|++ ++++++++ +..+++++|++|+++|+++.+
T Consensus 22 GHl~~~~~a~~~~--d~~~~~v----~~~~~~~~~~~~~~~~~R~~m~~~~~~~~~------------------------ 71 (352)
T 2qjt_B 22 GHLHNIIIALQNS--KKVIINI----GSCFNTPNIKNPFSFEQRKQMIESDLQVAG------------------------ 71 (352)
T ss_dssp HHHHHHHHHHHSE--EEEEEEE----EEESCCCCSSSCSCHHHHHHHHHHHHHHTT------------------------
T ss_pred HHHHHHHHHHHhC--CcEEEEE----CCCCCCcccCCCCCHHHHHHHHHHHhcccc------------------------
Confidence 8999999999986 8888764 33333443 467999999999999997653
Q ss_pred HHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhc----ccEEEEeCCCCChhhHhhhhhhhhhcCCcE
Q 028685 80 KNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRN----FGVICIRREGQDVEKIISDNEILDKNKGNI 155 (205)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~----~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i 155 (205)
+|+ .++++++|.|.+..... |.+..-+.+.+. ..++++.|........ + .....+
T Consensus 72 ---~~~--------~~~~~~~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~------~-~~~~~~ 130 (352)
T 2qjt_B 72 ---IDL--------DTVVIEPLADYFYQEQK---WQDELRKNVYKHAKNNNSIAIVGHIKDSSSYY------I-RSFPEW 130 (352)
T ss_dssp ---CCG--------GGEEEEEEECCTTCHHH---HHHHHHHHHTTTSCSSCCEEECCBSSSSHHHH------H-HHCTTS
T ss_pred ---Ccc--------ceEEEEEcCCCcCChHH---HHHHHHHHHHHhcccCCeEEEEcCCCCcchhh------h-hcCCcc
Confidence 143 27899999998877774 544211333332 4677777654322111 1 011123
Q ss_pred EEEcCCCCCccchHHHHHHHHc-C--CC-CCccChH-HHHHHHHhC
Q 028685 156 KLVDELVPNQISSTRIRDCICR-G--LS-IKYLTED-KVIDYIRES 196 (205)
Q Consensus 156 ~~~~~~~~~~ISST~IR~~~~~-g--~~-i~~~vp~-~V~~yI~~~ 196 (205)
..+......+||||.||+.+.. | .+ ++++||+ +|.+||.+.
T Consensus 131 ~~~~~~~~~~iSST~IR~~~~~~g~~~~~i~~lvP~~~va~~I~~w 176 (352)
T 2qjt_B 131 DYIGVDNYKNFNATEFRQKFYNGIISKQYMCSNDPKLGTYNFLTKF 176 (352)
T ss_dssp EECCBCCTTCCCHHHHHHHHHTTCCCGGGCSCSSTTSHHHHHHHHH
T ss_pred ceeccCCCCCCCchHHHHHHhccCcccchhhhcCChHHHHHHHHHH
Confidence 3332112357999999999997 8 78 9999999 999999864
No 25
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=99.33 E-value=7.6e-13 Score=97.23 Aligned_cols=115 Identities=16% Similarity=0.148 Sum_probs=62.8
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||+.+++.|.+.+ +++++++++- |....+.|...++.++|++|++ ++.+.+.+.+ +.+|+ ++++.++
T Consensus 16 GH~~li~~a~~~~--~~~~v~v~~~-~~~~~~~~~~l~~~~eR~~~l~-~~~~~d~v~~--------~~~~~-~~~~~~~ 82 (132)
T 2b7l_A 16 GHIELLRRAREMG--DYLIVALSTD-EFNQIKHKKSYYDYEQRKMMLE-SIRYVDLVIP--------EKGWG-QKEDDVE 82 (132)
T ss_dssp HHHHHHHHHHHTS--SEEEEEEECH-HHHHHTTCCCSSCHHHHHHHHH-TBTTCCEEEE--------ECCGG-GHHHHHH
T ss_pred HHHHHHHHHHHhC--CcEEEEEECC-HHHhccCCCCCCCHHHHHHHHH-hcCCCCEEEE--------CCChH-HHHHHHH
Confidence 8999999999987 6677776542 2110123445799999999999 7776676655 34566 7888777
Q ss_pred HHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcC
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE 160 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~ 160 (205)
+..+ + ++++|.|... .+ +.|.+.+ .+.+++
T Consensus 83 ~~~~----------~-~iv~G~D~~~------~~-----~~L~~~~---------------------------~v~~i~- 112 (132)
T 2b7l_A 83 KFDV----------D-VFVMGHDWEG------EF-----DFLKDKC---------------------------EVIYLK- 112 (132)
T ss_dssp HTTC----------C-EEEECGGGTT------TT-----GGGTTTS---------------------------EEEECS-
T ss_pred HcCC----------C-EEEECCCCcC------cH-----HHHHhCC---------------------------EEEEEC-
Confidence 6554 3 5889999721 23 2222111 233332
Q ss_pred CCCCccchHHHHHHHHcCC
Q 028685 161 LVPNQISSTRIRDCICRGL 179 (205)
Q Consensus 161 ~~~~~ISST~IR~~~~~g~ 179 (205)
+...||||.||+.+++|.
T Consensus 113 -~~~~iSST~IR~~i~~g~ 130 (132)
T 2b7l_A 113 -RTEGISTTKIKQELYGKD 130 (132)
T ss_dssp -SCC---------------
T ss_pred -CCCCcCHHHHHHHHHhcC
Confidence 234799999999999885
No 26
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=99.21 E-value=6.4e-12 Score=91.82 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=55.2
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVK 80 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~dtl~~l~ 80 (205)
||+.+++.|.+.+ |++++++++- |....+.|...++.++|++|++ ++.+.+.+.+ +.+|+ ++++.++
T Consensus 16 GH~~li~~a~~~~--d~~~v~v~~~-~~~~~~~~~~l~~~~eR~~~l~-~~~~~d~v~~--------~~~~~-~~~~~l~ 82 (129)
T 1coz_A 16 GHIKLLERAKQLG--DYLVVAISTD-EFNLQKQKKAYHSYEHRKLILE-TIRYVDEVIP--------EKNWE-QKKQDII 82 (129)
T ss_dssp HHHHHHHHHHTTS--SEEEEEEECH-HHHHHHTCCCSSCHHHHHHHHT-TBTTCCEEEE--------ECCST-THHHHHH
T ss_pred HHHHHHHHHHHhC--CCeEEEEECC-HHHhcCCCCCCCCHHHHHHHHH-hcCCCCEEEe--------CCCHH-HHHHHHH
Confidence 8999999999987 7888876552 2100112346899999999999 6776666543 23455 6777776
Q ss_pred HHhhhhccccCCCceEEEEEccch
Q 028685 81 NFLIEAGLISTESLKVMLVCGSDL 104 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~~fiiG~D~ 104 (205)
+..+ + ++++|.|.
T Consensus 83 ~~~~----------~-~iv~G~D~ 95 (129)
T 1coz_A 83 DHNI----------D-VFVMGDDW 95 (129)
T ss_dssp HTTC----------S-EEEEEGGG
T ss_pred HhCC----------c-EEEECCCC
Confidence 5332 4 78999995
No 27
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.09 E-value=1e-11 Score=105.81 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=48.3
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCc-----C----CCCCCHHHHHHHHHHHHcCCCC-eeeChhhhc
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK-----K----RGLISAEHRINLCNLACKSSDF-IMVDPWEAN 65 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~-----K----~~~~~~~~Rl~Ml~la~~~~~~-~~v~~~E~~ 65 (205)
||+.+++.|.+.+ |+|+|+|+ +++++ | +..+++++|++|+++|+++.++ ++|+.+|..
T Consensus 17 GHl~~~~~a~~~~--d~v~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~R~~m~~~~~~~~~~~~~v~~~~~~ 84 (365)
T 1lw7_A 17 GHINMIYEAFSKV--DELHVIVC-----SDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFKYQKNQIFIHHLVED 84 (365)
T ss_dssp HHHHHHHHHHTTC--SEEEEEEE-----ECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTSTTTTTEEEEEEECS
T ss_pred HHHHHHHHHHHHC--CEEEEEEC-----CCCccccccccccccCCCCCHHHHHHHHHHHhhcCCCcEEEEEeccC
Confidence 8999999999986 99999754 44443 1 3359999999999999999999 999988754
No 28
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=98.63 E-value=2.2e-07 Score=79.54 Aligned_cols=161 Identities=17% Similarity=0.192 Sum_probs=105.8
Q ss_pred Cc-HHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCC----eeeChhhhcCCCccchHHH
Q 028685 1 MH-LRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDF----IMVDPWEANQSGYQRTLTV 75 (205)
Q Consensus 1 gH-l~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~----~~v~~~E~~~~~~syT~dt 75 (205)
|| ..+.+.|++. .+.+++. |.-. +.|...++.+-|++..+.+++.+|. +.+-.....-.|+...+
T Consensus 202 aH~e~~~r~a~e~--~~~lllh-----PlvG-~tK~~Dip~~vR~~~~~~~l~~yp~~~v~l~~~p~~mryAGPrEai-- 271 (395)
T 1r6x_A 202 AHRELTVRAAREA--NAKVLIH-----PVVG-LTKPGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAMRMSGDREAV-- 271 (395)
T ss_dssp HHHHHHHHHHHHT--TCEEEEC-----CBCS-BCCTTCCCHHHHHHHHHHHGGGSSTTCEEECCBCCBCCCCHHHHHH--
T ss_pred hhHHHHHHHHHHc--CCcEEEE-----ECCC-CCCCCCCCHHHHHHHHHHHHHhCCCccEEEEecchhhhhcCcHHHH--
Confidence 57 5666666663 2566654 4332 3576789999999999999998875 44455555567776553
Q ss_pred HHH-HHHHhhhhccccCCCceEEEEEccchhh--------cCCCCCCCChhhHHHHhhcc------cEEEEeCCCCChhh
Q 028685 76 LSR-VKNFLIEAGLISTESLKVMLVCGSDLLE--------SFAIPGFWMPEQVWTICRNF------GVICIRREGQDVEK 140 (205)
Q Consensus 76 l~~-l~~~~~~~~~~~~~~~~~~fiiG~D~~~--------~l~~w~~W~~~~~e~l~~~~------~~iv~~R~~~~~~~ 140 (205)
+-. +++.|+ + -.||+|-|..- +|= .|+++ ++|++.+ .++.+.+-.|...
T Consensus 272 ~HAiiRkN~G---------c-thfIVGRDhAG~g~~~~~~d~Y---~~~~a--q~i~~~~~~el~I~~v~f~~~~Y~~~- 335 (395)
T 1r6x_A 272 WHAIIRKNYG---------A-SHFIVGRDHAGPGKNSKGVDFY---GPYDA--QELVESYKHELDIEVVPFRMVTYLPD- 335 (395)
T ss_dssp HHHHHHHHTT---------C-SEEEECTTTTCCCBCTTSCBSS---CTTHH--HHHHHHHHHHHTCEEEECCCEEEEGG-
T ss_pred HHHHHHHHcC---------C-ceEEECCCCCCCCCCCcccccC---CcchH--HHHHHhchhccCceEEEecceEEecc-
Confidence 333 567775 2 38999999874 333 45554 7888765 4555554332211
Q ss_pred HhhhhhhhhhcCCcEEEEcCCC-----CCccchHHHHHHHHcCCCC-CccChHHHHHHHHhCCCCC
Q 028685 141 IISDNEILDKNKGNIKLVDELV-----PNQISSTRIRDCICRGLSI-KYLTEDKVIDYIRESRLYL 200 (205)
Q Consensus 141 ~~~~~~~l~~~~~~i~~~~~~~-----~~~ISST~IR~~~~~g~~i-~~~vp~~V~~yI~~~~LY~ 200 (205)
.+.+...+..| ...||+|.+|+++++|..+ ..+++++|.+.+.+ +|.
T Consensus 336 -----------~~~~~~~~~~p~~~~~~~~iSGT~~R~~L~~G~~pP~~f~rpeV~~iL~~--~~~ 388 (395)
T 1r6x_A 336 -----------EDRYAPIDQIDTTKTRTLNISGTELRRRLRVGGEIPEWFSYPEVVKILRE--SNP 388 (395)
T ss_dssp -----------GTEEEETTTSCSSSCCCBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHTT--C--
T ss_pred -----------cCeEEEcccCCCCccceEccCHHHHHHHHHCcCCCCcccCCHHHHHHHHH--hcC
Confidence 12333332112 3689999999999999987 78999999998877 554
No 29
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.41 E-value=1.3e-06 Score=77.58 Aligned_cols=158 Identities=17% Similarity=0.179 Sum_probs=106.0
Q ss_pred Cc-HHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCC----eeeChhhhcCCCccchHHH
Q 028685 1 MH-LRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDF----IMVDPWEANQSGYQRTLTV 75 (205)
Q Consensus 1 gH-l~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~----~~v~~~E~~~~~~syT~dt 75 (205)
|| ..+.+.|++.. +.+++.| .-. +.|...++.+-|++..+.+++.+|. +.+-.++..-.|+...+
T Consensus 203 aH~e~~~~~a~e~~--~~lll~p-----l~g-~~k~~di~~~~r~~~~~~~~~~yp~~~~~l~~~p~~m~yaGprea~-- 272 (511)
T 1g8f_A 203 AHRELTVRAAREAN--AKVLIHP-----VVG-LTKPGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAMRMSGDREAV-- 272 (511)
T ss_dssp HHHHHHHHHHHHHT--CEEEEEE-----BCS-BCSTTCCCHHHHHHHHHHHGGGSCTTSEEECCBCCBCCCCHHHHHH--
T ss_pred HHHHHHHHHHHHcC--CcEEEEE-----CCC-CCCCCCCCHHHHHHHHHHHHHhCCcccEEEEecchhhhccCcHHHH--
Confidence 57 56666677643 6666654 222 3576789999999999999998875 44456666667777553
Q ss_pred HHH-HHHHhhhhccccCCCceEEEEEccchhh--------cCCCCCCCChhhHHHHhhcc------cEEEEeCCCCChhh
Q 028685 76 LSR-VKNFLIEAGLISTESLKVMLVCGSDLLE--------SFAIPGFWMPEQVWTICRNF------GVICIRREGQDVEK 140 (205)
Q Consensus 76 l~~-l~~~~~~~~~~~~~~~~~~fiiG~D~~~--------~l~~w~~W~~~~~e~l~~~~------~~iv~~R~~~~~~~ 140 (205)
+.. +++.|+ + -.||+|-|..- +|= .|+++ ++|++.+ ..+.+.+-.+..
T Consensus 273 ~hai~r~n~G---------~-th~IvGrdhAg~g~~~~~~~~Y---~~~~a--q~i~~~~~~~l~i~pv~fd~~~y~~-- 335 (511)
T 1g8f_A 273 WHAIIRKNYG---------A-SHFIVGRDHAGPGKNSKGVDFY---GPYDA--QELVESYKHELDIEVVPFRMVTYLP-- 335 (511)
T ss_dssp HHHHHHHHTT---------C-SEEECCTTTTCCCBCTTSCBSS---CTTHH--HHHHHHTHHHHCSEEECCCCEEEEG--
T ss_pred HHHHHHHhCC---------C-ceEEeCCCCCCCCCCCcccccC---CcchH--HHHHHhCccccCceEEeecceeEec--
Confidence 333 567775 2 38999999874 333 45554 8888765 444443322211
Q ss_pred HhhhhhhhhhcCCcEEEEcCCCC-----CccchHHHHHHHHcCCCC-CccChHHHHHHHHh
Q 028685 141 IISDNEILDKNKGNIKLVDELVP-----NQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 195 (205)
Q Consensus 141 ~~~~~~~l~~~~~~i~~~~~~~~-----~~ISST~IR~~~~~g~~i-~~~vp~~V~~yI~~ 195 (205)
..+.+..++..+. ..||+|+||++++.|..+ ..+++++|.+.+++
T Consensus 336 ----------~~g~~i~~d~~p~~~~~~~~iSgt~IR~~Lr~G~~~P~~f~rpeV~~vLr~ 386 (511)
T 1g8f_A 336 ----------DEDRYAPIDQIDTTKTRTLNISGTELRRRLRVGGEIPEWFSYPEVVKILRE 386 (511)
T ss_dssp ----------GGTEEEEGGGCSSSCCCCBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHHH
T ss_pred ----------ccCeEEEcccCCCCcccccccCHHHHHHHHhCCCCCCccccChhhHHHHHH
Confidence 0134445542232 689999999999999987 68999999999887
No 30
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=98.36 E-value=1.7e-07 Score=69.97 Aligned_cols=57 Identities=9% Similarity=-0.001 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCc-C--CCCCCHHHHHHHHHHHH-cCC-CCeeeChhh
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK-K--RGLISAEHRINLCNLAC-KSS-DFIMVDPWE 63 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~-K--~~~~~~~~Rl~Ml~la~-~~~-~~~~v~~~E 63 (205)
||+.+++.|.+. ++|+|+|+| ++++++ | +..+++++|++|+++|+ +++ +++.+..++
T Consensus 15 GHl~l~~~a~~~-~~d~viv~v-----~~~~~~~k~~~~~~~~~~R~~ml~~a~~~~~~~~~~i~~i~ 76 (148)
T 3do8_A 15 GHKKLIDVAIKL-GGRDITIGV-----TSDRMARARIRSVLPFAIRAENVKRYVMRKYGFEPEIVKIT 76 (148)
T ss_dssp HHHHHHHHHHHH-HTTCEEEEE-----ECHHHHHHHSCCCSCHHHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred HHHHHHHHHHHh-CCCEEEEEE-----CCCccccccCCCCCCHHHHHHHHHHHHhcccCCcEEEEeec
Confidence 899999999998 789999975 444454 3 45899999999999999 764 456665555
No 31
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=98.02 E-value=1.7e-06 Score=64.06 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=34.5
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCc---CCCCCCHHHHHHHHHHHHcCCCCeeeC
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK---KRGLISAEHRINLCNLACKSSDFIMVD 60 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~---K~~~~~~~~Rl~Ml~la~~~~~~~~v~ 60 (205)
||+.+++.|.+.. ++++++.++ .+.|. ++..++.++|++|++. +...+.+.+.
T Consensus 17 GH~~li~~a~~~~--~~~~v~v~~----~~~~~~~~~~~l~~~~eR~~~l~~-~~~vd~v~~~ 72 (143)
T 3glv_A 17 GHIHYLKESKKLG--DELVVVVAR----DSTARNNGKIPIFDENSRLALISE-LKVVDRAILG 72 (143)
T ss_dssp HHHHHHHHHHTTS--SEEEEEECC----HHHHHHTTCCCSSCHHHHHHHHTT-BTTCSEEEEC
T ss_pred HHHHHHHHHHHhC--CCcEEEEEC----CcchhhcCCCCCCCHHHHHHHHHh-cCCCCEEEEc
Confidence 8999999999976 556554321 11111 2358999999999986 4434454443
No 32
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=97.93 E-value=1.5e-05 Score=63.59 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=37.1
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCC---CcC-CCCCCHHHHHHHHHHHHcCCCCeee
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDA---YKK-RGLISAEHRINLCNLACKSSDFIMV 59 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~---~~K-~~~~~~~~Rl~Ml~la~~~~~~~~v 59 (205)
||+.++++|.+.+..|.+++.. +.+. ..| ...++.++|++|++ +++..+.+.+
T Consensus 91 GHl~iL~rAk~lf~gD~LIVgV-----~~D~~v~~~Kg~pi~s~eER~e~v~-~~k~VD~Vvv 147 (236)
T 3hl4_A 91 GHARALMQAKNLFPNTYLIVGV-----CSDELTHNFKGFTVMNENERYDAVQ-HCRYVDEVVR 147 (236)
T ss_dssp HHHHHHHHHHTSSSSEEEEEEE-----CCHHHHHHHTCCCSSCHHHHHHHHH-TBTTCSEEES
T ss_pred HHHHHHHHHHHhcCCCeEEEEE-----cccHHHhhcCCCCCCCHHHHHHHHH-HhCCCCeEEE
Confidence 8999999999987557766642 1111 134 36899999999999 4555555544
No 33
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=97.72 E-value=5.8e-05 Score=63.56 Aligned_cols=137 Identities=15% Similarity=0.149 Sum_probs=73.4
Q ss_pred CcHHHHHHHHHHhccCCe-EEeccccCCCCC---CCcC--CCCCCHHHHHHHHHHHHcCCCCeeeChhhhcCCCccchHH
Q 028685 1 MHLRMFELARDTLNSEGY-CVIGGYMSPVND---AYKK--RGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTLT 74 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v-~~vp~~~~P~~~---~~~K--~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~~~~~syT~d 74 (205)
||..+++.|.+.....++ .++-+ |.|.-. .+.+ ..+++.++|++|++.+ +.+.+.+.+|.......+.. +
T Consensus 30 GHq~Li~~a~~~a~~~~~~~vvvt-FdphP~~v~~~~~~~~~L~~~~eR~~ll~~~--gVD~v~v~~F~~~~a~ls~e-~ 105 (338)
T 2x0k_A 30 GHQKLINATVEKAREVGAKAIMVT-FDPHPVSVFLPRRAPLGITTLAERFALAESF--GIDGVLVIDFTRELSGTSPE-K 105 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEE-ESSCHHHHHSTTCSCCBSSCHHHHHHHHHHT--TCSEEEEECTTTSSSSCCHH-H
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEE-ecCCHHHHcCCccCCCCCCCHHHHHHHHHhc--CCCEEEEccccHHHHhCCHH-H
Confidence 899999999987643222 22222 233210 0122 2478999999999974 45556555554333222211 2
Q ss_pred HHHH-HHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCC
Q 028685 75 VLSR-VKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKG 153 (205)
Q Consensus 75 tl~~-l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~ 153 (205)
.++. |.+.+. --++++|.|....-. +|.+. +.|-+.+. + |.
T Consensus 106 Fi~~il~~~l~----------~~~ivvG~Df~FG~~---r~g~~--~~L~~~~~-----~-g~----------------- 147 (338)
T 2x0k_A 106 YVEFLLEDTLH----------ASHVVVGANFTFGEN---AAGTA--DSLRQICQ-----S-RL----------------- 147 (338)
T ss_dssp HHHHCCCCCTC----------EEEEEEETTCEESGG---GCEEH--HHHHHHTT-----T-TS-----------------
T ss_pred HHHHHHHhhcC----------CCEEEEeecCCCCCC---CCCCH--HHHHHHhc-----C-Ce-----------------
Confidence 3333 222221 248999999876655 34332 33333221 1 11
Q ss_pred cEEEEcC--CCCCccchHHHHHHHHcCC
Q 028685 154 NIKLVDE--LVPNQISSTRIRDCICRGL 179 (205)
Q Consensus 154 ~i~~~~~--~~~~~ISST~IR~~~~~g~ 179 (205)
.+..++. .....||||.||+.+++|.
T Consensus 148 ~V~~v~~~~~~~~~ISST~IR~~L~~G~ 175 (338)
T 2x0k_A 148 TVDVIDLLDDEGVRISSTTVREFLSEGD 175 (338)
T ss_dssp EEEEECCCEETTEECSHHHHHHHHHTTC
T ss_pred EEEEECcEecCCcccccchHHHHHhcCc
Confidence 1111110 0124799999999999885
No 34
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=97.36 E-value=0.002 Score=53.36 Aligned_cols=88 Identities=10% Similarity=0.083 Sum_probs=47.5
Q ss_pred CcHHHHHHHHHHhccCCe-EEeccccCCCCC---CC---c-CCCCCCHHHHHHHHHHHHcCCCCeeeChhh--hcCCCcc
Q 028685 1 MHLRMFELARDTLNSEGY-CVIGGYMSPVND---AY---K-KRGLISAEHRINLCNLACKSSDFIMVDPWE--ANQSGYQ 70 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v-~~vp~~~~P~~~---~~---~-K~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E--~~~~~~s 70 (205)
||..+++.|.+.....++ .+|-+ |.|.-. .+ . ...+++.++|+++++.. +-+.+.+-+|. +..-.+.
T Consensus 35 GHq~li~~a~~~a~~~~~~~vV~T-FdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~l--GVD~v~~~~F~~~~a~ls~e 111 (308)
T 3op1_A 35 GHQELFRVANKAARKDLLPIVVMT-FNESPKIALEPYHPDLFLHILNPAERERKLKRE--GVEELYLLDFSSQFASLTAQ 111 (308)
T ss_dssp HHHHHHHHHHHHSSTTCCCEEEEE-ESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHH--TCCEEEEECCCHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHhcCCceEEEE-ecCCHHHHhCccccCCcccCCCHHHHHHHHHHc--CCCEEEEecCCHHHHcCCHH
Confidence 899999999987654321 12211 344211 11 1 12478999999999865 34444444443 2111111
Q ss_pred chHHHHHHHHHHhhhhccccCCCceEEEEEccch
Q 028685 71 RTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDL 104 (205)
Q Consensus 71 yT~dtl~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 104 (205)
+.++.+-+.+. --.+++|.|.
T Consensus 112 ---~Fv~~ll~~l~----------~~~ivvG~Df 132 (308)
T 3op1_A 112 ---EFFATYIKAMN----------AKIIVAGFDY 132 (308)
T ss_dssp ---HHHHHHHHHHT----------EEEEEEETTC
T ss_pred ---HHHHHHHHHcC----------CCEEEECcCC
Confidence 23333323342 3588999993
No 35
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=97.32 E-value=0.00019 Score=59.28 Aligned_cols=126 Identities=13% Similarity=0.062 Sum_probs=67.7
Q ss_pred CcHHHHHHHHHHhcc---CCeEEeccccCCCC--CCCcC-CCCCCHHHHHHHHHHHHcCCCCeeeChh-hhcCCCccchH
Q 028685 1 MHLRMFELARDTLNS---EGYCVIGGYMSPVN--DAYKK-RGLISAEHRINLCNLACKSSDFIMVDPW-EANQSGYQRTL 73 (205)
Q Consensus 1 gHl~ia~~a~~~~~l---d~v~~vp~~~~P~~--~~~~K-~~~~~~~~Rl~Ml~la~~~~~~~~v~~~-E~~~~~~syT~ 73 (205)
||..+++.|.+.... .-+.+. |-|.. -.+.+ ..+++.++|++|++.+ . .+.+-.+ |+....+.
T Consensus 14 GH~~ll~~a~~~a~~~~~~~vVvt---FdphP~~l~~~~~~~l~~~~eR~~ll~~l-g---~~~v~~F~~~a~ls~~--- 83 (293)
T 1mrz_A 14 GHQKVLRTMKEIAFFRKDDSLIYT---ISYPPEYFLPDFPGLLMTVESRVEMLSRY-A---RTVVLDFFRIKDLTPE--- 83 (293)
T ss_dssp HHHHHHHHHHHHHHHHTCCCEEEE---ESSCGGGGSTTCCCBSSCHHHHHHHHTTT-S---CEEEECHHHHTTCCHH---
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEE---ecCCHHHhCCCCCCCCCCHHHHHHHHHhC-C---CEEEEEhHHhhcCCHH---
Confidence 899999999987643 222321 22311 01111 2489999999999864 2 4444445 22221221
Q ss_pred HHHHHHHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChhhHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCC
Q 028685 74 TVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEILDKNKG 153 (205)
Q Consensus 74 dtl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~ 153 (205)
+.++.+. +. --++++|.|.-..-. +|.+. +.|-+ +++-
T Consensus 84 ~Fi~~il--l~----------~~~iVvG~Df~fG~~---~~g~~--~~L~~-~G~~------------------------ 121 (293)
T 1mrz_A 84 GFVERYL--SG----------VSAVVVGRDFRFGKN---ASGNA--SFLRK-KGVE------------------------ 121 (293)
T ss_dssp HHHHHHC--TT----------CCEEEEETTCCBSGG---GCBCH--HHHHH-TTCE------------------------
T ss_pred HHHHHHh--cC----------CCEEEECCCCCCCCC---CCCCH--HHHHh-CCCE------------------------
Confidence 2333322 22 137999999865544 34332 33332 2221
Q ss_pred cEEEEcC--CCCCccchHHHHHHHHcCC
Q 028685 154 NIKLVDE--LVPNQISSTRIRDCICRGL 179 (205)
Q Consensus 154 ~i~~~~~--~~~~~ISST~IR~~~~~g~ 179 (205)
+..++. .....||||.||+.+++|.
T Consensus 122 -V~~v~~~~~~~~~iSST~IR~~L~~G~ 148 (293)
T 1mrz_A 122 -VYEIEDVVVQGKRVSSSLIRNLVQEGR 148 (293)
T ss_dssp -EEEECCCEETTEECCHHHHHHHHHTTC
T ss_pred -EEEECCEEeCCccccHhHHHHHHhcCc
Confidence 222210 0124799999999999985
No 36
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}
Probab=97.10 E-value=0.0031 Score=53.33 Aligned_cols=32 Identities=31% Similarity=0.498 Sum_probs=29.5
Q ss_pred ccchHHHHHHHHcCC--CCCccChHHHHHHHHhC
Q 028685 165 QISSTRIRDCICRGL--SIKYLTEDKVIDYIRES 196 (205)
Q Consensus 165 ~ISST~IR~~~~~g~--~i~~~vp~~V~~yI~~~ 196 (205)
.+|+|.||+.+.+|. .+..+||+.+.+|+++.
T Consensus 226 ~~SAS~IR~~i~~g~~~~~~~lVP~~t~~~l~~~ 259 (357)
T 3gmi_A 226 GISGTKIREAIFSGKFEDIKNMLPKTTLSILKEL 259 (357)
T ss_dssp CCCHHHHHHHHHTTCGGGTGGGSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHcCChhHHHhcCChHHHHHHHHH
Confidence 799999999999995 79999999999999863
No 37
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=96.46 E-value=0.0062 Score=51.14 Aligned_cols=53 Identities=19% Similarity=0.044 Sum_probs=34.4
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC-CCCCCHHHHHHHHHHHHcCCCCee
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK-RGLISAEHRINLCNLACKSSDFIM 58 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K-~~~~~~~~Rl~Ml~la~~~~~~~~ 58 (205)
||+.++++|.+.. |++.+..+. .|. ....| ....+.++|++|++. ++.-+.+.
T Consensus 22 GH~~lL~~A~~l~--d~LiVgV~~-d~~-v~~~K~~pi~s~eER~~~l~~-l~~VD~Vv 75 (341)
T 3elb_A 22 GHSNQLRQARAMG--DYLIVGVHT-DEE-IAKHKGPPVFTQEERYKMVQA-IKWVDEVV 75 (341)
T ss_dssp HHHHHHHHHHHTS--SEEEEEECC-HHH-HHHHSSCCSSCHHHHHHHHHH-BTTCCEEE
T ss_pred HHHHHHHHHHHhC--CcCEEEeec-CHH-HhccCCCCCCCHHHHHHHHHH-cCCCCEEE
Confidence 8999999999987 666554211 111 00124 368999999999995 55444443
No 38
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=95.34 E-value=0.0049 Score=51.78 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHHhccC--CeEEeccccCCCCCC----CcC---CCCCCHHHHHHHHHHHHcCCCCeeeC
Q 028685 1 MHLRMFELARDTLNSE--GYCVIGGYMSPVNDA----YKK---RGLISAEHRINLCNLACKSSDFIMVD 60 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld--~v~~vp~~~~P~~~~----~~K---~~~~~~~~Rl~Ml~la~~~~~~~~v~ 60 (205)
||+.++++|.+.+ | .++|- .+.+ +.| .+.++.++|++|++ +++..+++.+.
T Consensus 213 GHl~~L~rA~~l~--D~~~LiVg------V~~d~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~vd~V~v~ 272 (341)
T 3elb_A 213 GHVDFLEKVHRLA--ERPYIIAG------LHFDQEVNHYKGKNYPIMNLHERTLSVL-ACRYVSEVVIG 272 (341)
T ss_dssp HHHHHHHHHHTTS--SSEEEEEE------EECHHHHHHHHCTTCCSSCHHHHHHHHH-TBTTCCEEEEE
T ss_pred HHHHHHHHHHHhC--CCCEEEEE------EccCHhhHhhcCCCCCCCCHHHHHHHHH-HcCCCCCEEEC
Confidence 8999999999987 7 44431 2222 234 36899999999999 57776777663
No 39
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.17 E-value=0.13 Score=45.71 Aligned_cols=162 Identities=15% Similarity=0.202 Sum_probs=84.7
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCC-C--CeeeChhhh--cCCCccchHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS-D--FIMVDPWEA--NQSGYQRTLTV 75 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~-~--~~~v~~~E~--~~~~~syT~dt 75 (205)
||..++..|+... .+.+.+. |.... .|...++.+-|++..+.+++.+ | .+.+..+.. .-.||.-. .
T Consensus 178 ~H~~l~~~a~~~~-~~~llv~-----p~~g~-~k~~di~~~~R~~~~~~~~~~~~p~~~v~~~~~p~~m~~agprea--~ 248 (546)
T 2gks_A 178 VHEELTKRAMEKV-GGGLLLH-----PVVGL-TKPGDVDVYTRMRIYKVLYEKYYDKKKTILAFLPLAMRMAGPREA--L 248 (546)
T ss_dssp HHHHHHHHHHHHH-TSEEEEC-----CBCSB-CCTTSCCHHHHHHHHHHHHHHHSCTTTEEECBBCCBCCCCTHHHH--H
T ss_pred HHHHHHHHHHHhc-CCcEEEE-----eCcCC-CCCCCCCHHHHHHHHHHHHHhcCCCCcEEEeecCchhhccCchHH--H
Confidence 6888888888753 2666664 33222 3556899999999999998874 4 344454443 33454411 1
Q ss_pred H-HHHHHHhhhhccccCCCceEEEEEccchhhcCC-----CCCCCChhhHHHHhhc------ccEEEEeCCCCChhhHhh
Q 028685 76 L-SRVKNFLIEAGLISTESLKVMLVCGSDLLESFA-----IPGFWMPEQVWTICRN------FGVICIRREGQDVEKIIS 143 (205)
Q Consensus 76 l-~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~-----~w~~W~~~~~e~l~~~------~~~iv~~R~~~~~~~~~~ 143 (205)
+ ..+++.|+ +. .||+|-|..---. . .|..++.++|++. +..+.+.--.+.
T Consensus 249 ~ha~ir~n~G---------~t-h~ivgrdhag~g~~~~~~~--~Y~~~~a~~~~~~~~~~lgi~~v~fd~~~y~------ 310 (546)
T 2gks_A 249 WHGIIRRNYG---------AT-HFIVGRDHASPGKDSKGKP--FYDPYEAQELFKKYEDEIGIKMVPFEELVYV------ 310 (546)
T ss_dssp HHHHHHHHTT---------CS-EEEECTTTTCCCBCTTSCB--SSCTTHHHHHHHHHHHHHTCEEEECCCCEEE------
T ss_pred HHHHHHHhCC---------CC-eEEECCCCCCCCCCCCCcc--cCCcchHHHHHHhcccccCceEEeccceEEE------
Confidence 2 23456664 34 7788977653221 1 1222333666643 222222211110
Q ss_pred hhhhhhhcCCcEEEEcCCC-----CCccchHHHHHH-HHcCCCC-CccChHHHHHHHHh
Q 028685 144 DNEILDKNKGNIKLVDELV-----PNQISSTRIRDC-ICRGLSI-KYLTEDKVIDYIRE 195 (205)
Q Consensus 144 ~~~~l~~~~~~i~~~~~~~-----~~~ISST~IR~~-~~~g~~i-~~~vp~~V~~yI~~ 195 (205)
...+.+..++..+ ...||+|+||+. ++.|..+ ..+..++|.+-+++
T Consensus 311 ------~~~g~~i~id~~~~~~~~~~~iSgt~iR~~~L~~g~~~p~~~~r~eV~~~lr~ 363 (546)
T 2gks_A 311 ------PELDQYVEINEAKKRNLKYINISGTEIRENFLKQGRKLPEWFTRPEVAEILAE 363 (546)
T ss_dssp ------TTTTEEECSCC---------------CTHHHHTTTCCCCTTTSCHHHHHHHHH
T ss_pred ------cCCCeEEeeeccCCCCceeeecchhhhhhhhhcCCCCCCccccchhHHHHHHH
Confidence 0113333333112 247999999999 9999877 44555777766655
No 40
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.30 E-value=1 Score=40.21 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=89.6
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCC--eeeChhhh--cCCCccchHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDF--IMVDPWEA--NQSGYQRTLTVL 76 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~--~~v~~~E~--~~~~~syT~dtl 76 (205)
||..++..|.+..+ +.+.+. |... +.|...++.+.|++..+.+++.+|. +.+..+.. .-.|+.=.+--
T Consensus 205 ~H~~l~~~a~~~~~-~~llv~-----pl~g-~~k~~di~~~~R~~~~~~~~~~~p~~~v~l~~~p~~m~~agprea~~h- 276 (573)
T 1m8p_A 205 AHRELTVRAARSRQ-ANVLIH-----PVVG-LTKPGDIDHFTRVRAYQALLPRYPNGMAVLGLLGLAMRMGGPREAIWH- 276 (573)
T ss_dssp HHHHHHHHHHHHTT-CEEEEC-----CBCC-CCCTTCHHHHHHHHHHHHHGGGSSTTSEEECBBCCCCCCCHHHHHHHH-
T ss_pred hhHHHHHHHHHhcC-CcEEEE-----eCCC-CCCCCCCCHHHHHHHHHHHHHhCCCCcEEEEecCchhhccCchHHHHH-
Confidence 68888888887642 556654 4322 2356779999999999999988764 33343332 22333211111
Q ss_pred HHHHHHhhhhccccCCCceEEEEEccchhhcCC-----CCCCCChhhHHHHhhc------ccEEEEeCCCCChhhHhhhh
Q 028685 77 SRVKNFLIEAGLISTESLKVMLVCGSDLLESFA-----IPGFWMPEQVWTICRN------FGVICIRREGQDVEKIISDN 145 (205)
Q Consensus 77 ~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~-----~w~~W~~~~~e~l~~~------~~~iv~~R~~~~~~~~~~~~ 145 (205)
..+++.|+ +. .||+|-|..---. . .|..++.++|++. +..+.+.--.+..
T Consensus 277 a~ir~n~G---------~t-h~ivgrdhag~g~~~~~~~--~Y~~~~a~~i~~~~~~~l~i~~v~fd~~~y~~------- 337 (573)
T 1m8p_A 277 AIIRKNHG---------AT-HFIVGRDHAGPGSNSKGED--FYGPYDAQHAVEKYKDELGIEVVEFQMVTYLP------- 337 (573)
T ss_dssp HHHHHHHT---------CS-EEEECTTTTCCCCCTTCCC--SSCTTHHHHHHHHHHHHHCCEEEECCCCCBBT-------
T ss_pred HHHHHHCC---------CC-eEEECCCCCCCCCCCCCcc--cCCcchHHHHHHhhhhhcCceeEeccceEEEc-------
Confidence 34566674 34 7888988643221 1 2323334666653 2233332211110
Q ss_pred hhhhhcCCcEEEEcCC----CCCccchHHHHHHHHcCCCCC-ccChHHHHHHHHh
Q 028685 146 EILDKNKGNIKLVDEL----VPNQISSTRIRDCICRGLSIK-YLTEDKVIDYIRE 195 (205)
Q Consensus 146 ~~l~~~~~~i~~~~~~----~~~~ISST~IR~~~~~g~~i~-~~vp~~V~~yI~~ 195 (205)
..+.+..++.. ....||.|.||+.+..|..+. .+..+.|..-.++
T Consensus 338 -----~~g~~i~id~~~~~~~~~~iSgt~ir~~l~~g~~~p~w~~~~eVsr~lRe 387 (573)
T 1m8p_A 338 -----DTDEYRPVDQVPAGVKTLNISGTELRRRLRSGAHIPEWFSYPEVVKILRE 387 (573)
T ss_dssp -----TTTBCCCSSSSCTTSCCBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHHT
T ss_pred -----CCCcEEecccCCCCceeecCChHHHHHHHhccCCCCcccccccccHHHHH
Confidence 01223233211 125799999999999998763 3443567665554
No 41
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.84 E-value=1.1 Score=40.48 Aligned_cols=162 Identities=15% Similarity=0.097 Sum_probs=93.2
Q ss_pred CcHHHHHHHHHHhcc-----CCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcC--CC--CeeeChhhh--cCCCc
Q 028685 1 MHLRMFELARDTLNS-----EGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS--SD--FIMVDPWEA--NQSGY 69 (205)
Q Consensus 1 gHl~ia~~a~~~~~l-----d~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~--~~--~~~v~~~E~--~~~~~ 69 (205)
||-.|.+.|++.+.. +.+.+- |.-- +.|...++.+-|++=.+..++. +| ++.+..+.. .-.||
T Consensus 427 aHe~l~~~a~~~~~d~g~~~~~lll~-----pl~G-~tk~~di~~~~r~~~~~~~~~~~y~p~~~~~l~~~p~~mryaGP 500 (630)
T 1x6v_B 427 GHALLMQDTHKQLLERGYRRPVLLLH-----PLGG-WTKDDDVPLMWRMKQHAAVLEEGVLNPETTVVAIFPSPMMYAGP 500 (630)
T ss_dssp HHHHHHHHHHHHHHHHTCSSEEEEEE-----EBCS-CCCTTSCCHHHHHHHHHHHHHTTSSCGGGEEECCBCCCCCCCHH
T ss_pred HHHHHHHHHHHHHHhhccCCCcEEEE-----eCcC-CCCCCCCCHHHHHHHHHHHHHcCCCCCcceEEeeccchhhhcCc
Confidence 588888888875421 135553 3322 2466789999999999999984 44 355555443 22343
Q ss_pred cchHHHHH--HHHHHhhhhccccCCCceEEEEEccchhhcCC-----CCCCCChhhHHHHhhcc----cE--EEEeCCCC
Q 028685 70 QRTLTVLS--RVKNFLIEAGLISTESLKVMLVCGSDLLESFA-----IPGFWMPEQVWTICRNF----GV--ICIRREGQ 136 (205)
Q Consensus 70 syT~dtl~--~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~-----~w~~W~~~~~e~l~~~~----~~--iv~~R~~~ 136 (205)
. +-+- -+++.|. --.||+|-|..---+ . .|..++.++|++.. .+ +.+.---|
T Consensus 501 r---Ea~~hai~rkN~G----------cth~IVGrdhAG~g~~~~~~~--~Y~~~~aq~i~~~~~~~l~i~~~~~~~~~Y 565 (630)
T 1x6v_B 501 T---EVQWHCRARMVAG----------ANFYIVGRDPAGMPHPETGKD--LYEPSHGAKVLTMAPGLITLEIVPFRVAAY 565 (630)
T ss_dssp H---HHHHHHHHHHHTT----------CSEEEECSSTTCCBCTTTCSB--SSCTTHHHHHHHHCTTCTTCEEEECCCEEE
T ss_pred H---HHHHHHHHHHhCC----------CCeEEECCCCCCCCCCCCccc--cCCcchHHHHHhcCcccCCceEEEcceeEE
Confidence 3 2232 2456664 358899999864331 1 23334557887632 11 11111000
Q ss_pred ChhhHhhhhhhhhhcCCcEEEEcCC---CCCccchHHHHHHHHcCCCC-CccChHHHHHHHHh
Q 028685 137 DVEKIISDNEILDKNKGNIKLVDEL---VPNQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 195 (205)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~i~~~~~~---~~~~ISST~IR~~~~~g~~i-~~~vp~~V~~yI~~ 195 (205)
. ...+.+...++. ....||.|.+|++++.|..+ ..+.-|+|.+-|.+
T Consensus 566 -----------~-~~~~~~~~~~p~~~~~~~~isgt~~R~~l~~G~~pP~~f~rpev~~~l~~ 616 (630)
T 1x6v_B 566 -----------N-KKKKRMDYYDSEHHEDFEFISGTRMRKLAREGQKPPEGFMAPKAWTVLTE 616 (630)
T ss_dssp -----------E-TTTTEEEECCSTTGGGEECCCHHHHHHHHHTTCCCCTTSSCHHHHHHHHH
T ss_pred -----------E-cccCceeccCCCCCceeeecCHHHHHHHHHCCCCCCcccCcHHHHHHHHH
Confidence 0 001222222211 11479999999999999865 57788888887765
No 42
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.37 E-value=0.84 Score=40.63 Aligned_cols=163 Identities=10% Similarity=0.000 Sum_probs=81.1
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcCCCCCCHHHHHHHHHHHHcCCCC--ee--eChhhhcCCCccchHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDF--IM--VDPWEANQSGYQRTLTVL 76 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K~~~~~~~~Rl~Ml~la~~~~~~--~~--v~~~E~~~~~~syT~dtl 76 (205)
||..+...|....+ |.+.+ .|.-. +.|...++.+-|++=.+.+++.+|. +. +-.++-.-.|+. +-+
T Consensus 178 ah~~~~~~~~~~~~-~~lll-----~pl~g-~~k~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~m~~agpr---ea~ 247 (552)
T 3cr8_A 178 AQYEFCLKSAIENE-ANLLL-----HPQVG-GDITEAPAYFGLVRSFLAIRDRFPAATTQLSLLPAPPPEASGR---ALL 247 (552)
T ss_dssp HHHHHHHHHHHHTT-CEEEE-----CCBCC-CCTTTCTTHHHHHHHHHHHGGGSCGGGEEECBBCSCCCCSCSH---HHH
T ss_pred HHHHHHHHHHHhcC-CeEEE-----EeccC-CCCCCCCCHHHHHHHHHHHHHhCCCccEEEeecchhhcccCcH---HHH
Confidence 57677777775442 55555 34322 2466789999999999999998874 22 333444445554 333
Q ss_pred --HHHHHHhhhhccccCCCceEEEEEccchhhcCCC--CCCCC-hhhHHHHhhcc----c--EEEEeCCCCChhhHhhhh
Q 028685 77 --SRVKNFLIEAGLISTESLKVMLVCGSDLLESFAI--PGFWM-PEQVWTICRNF----G--VICIRREGQDVEKIISDN 145 (205)
Q Consensus 77 --~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~--w~~W~-~~~~e~l~~~~----~--~iv~~R~~~~~~~~~~~~ 145 (205)
..+++.|. --.||+|-|..---+. =..+| .++.++|++.+ . .+.+.--.+.
T Consensus 248 ~ha~~r~n~G----------~th~ivGrdhag~g~~~~~~~~Y~~~~a~~i~~~~~~~l~i~pv~f~~~~y~-------- 309 (552)
T 3cr8_A 248 LRAIVARNFG----------CSLLIAGGEHQPDGGDCRRGEDLTQNRVDPSVAERAEKIGVRLIAYPRMVYV-------- 309 (552)
T ss_dssp HHHHHHHHHT----------CSEEEC----------------------CCSSHHHHHHHTCEEECCCCEEEE--------
T ss_pred HHHHHHHhCC----------CCeeeeCCCCCCCCCCCCccccCCcchHHHHHHhhhhhcCCeeeeccceEEe--------
Confidence 23567775 3478999986522100 00122 22224444432 1 1111110000
Q ss_pred hhhhhcCCcEEEEcCCC----CCccchHHHHHHHHcCCCC-CccChHHHHHHHHh
Q 028685 146 EILDKNKGNIKLVDELV----PNQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 195 (205)
Q Consensus 146 ~~l~~~~~~i~~~~~~~----~~~ISST~IR~~~~~g~~i-~~~vp~~V~~yI~~ 195 (205)
+ ..+.+..++..+ ...+|.|.||+.++.|..+ ..+.-+.|..-+++
T Consensus 310 ---~-~~g~~~~~d~~~~~~~~~~isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~ 360 (552)
T 3cr8_A 310 ---E-DRAEHLPEAEAPQGARLLTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHR 360 (552)
T ss_dssp ---G-GGTEEEEGGGSCTTCCEECCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHH
T ss_pred ---c-CCCeEEecccCCCCcccccCCHHHHHHHHhcCCCCCccccccchhhhhhh
Confidence 0 012343443212 1479999999999999876 34443667665554
No 43
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=46.24 E-value=22 Score=28.56 Aligned_cols=47 Identities=23% Similarity=0.157 Sum_probs=29.9
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC---CCCCCHHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLA 50 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K---~~~~~~~~Rl~Ml~la 50 (205)
||+.+++.|.+.. +. .+|--+..|..-.+.+ +.+.+.++|+++++.+
T Consensus 31 GH~~Li~~A~~~a--~~-vVvsff~nP~qf~~~ed~~~yp~tle~d~~ll~~~ 80 (276)
T 1v8f_A 31 GHLALVERARREN--PF-VVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEA 80 (276)
T ss_dssp HHHHHHHHHHHHC--SE-EEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--CE-EEEEEECCHHHhCCCcccCCCCcCHHHHHHHHHhC
Confidence 8999999999986 33 3332222333222222 2478899999999864
No 44
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=45.30 E-value=17 Score=29.37 Aligned_cols=47 Identities=19% Similarity=0.170 Sum_probs=29.4
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC---CCCCCHHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLA 50 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K---~~~~~~~~Rl~Ml~la 50 (205)
||+.+++.|++.. | ..+|--+..|..-.+.. +.+.+.++|+++++.+
T Consensus 36 GH~sLI~~A~~~a--d-~vVVSffvnP~qf~~~ed~~~yp~tle~d~~lL~~~ 85 (280)
T 2ejc_A 36 GHLSLVRRARAEN--D-VVVVSIFVNPTQFGPNEDYERYPRDFERDRKLLEKE 85 (280)
T ss_dssp HHHHHHHHHHHHS--S-EEEEEECCCGGGCCTTSCGGGSCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC--C-EEEEEEeCChHHhcCCcccccCCCCHHHHHHHHHHC
Confidence 8999999999987 3 33332222343222221 2367889999998743
No 45
>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.1
Probab=38.46 E-value=6.6 Score=29.46 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=0.0
Q ss_pred CCccChHHHHHHHHh--CCCC
Q 028685 181 IKYLTEDKVIDYIRE--SRLY 199 (205)
Q Consensus 181 i~~~vp~~V~~yI~~--~~LY 199 (205)
...-||+.|++||++ |+.=
T Consensus 99 ak~~LP~dVI~Ymrd~~NgIt 119 (192)
T 1xou_A 99 AKAQLPDEVISYINDPRNDIT 119 (192)
T ss_dssp ---------------------
T ss_pred ccccCCHHHHHHHHccCCCee
Confidence 356799999999999 8763
No 46
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=37.54 E-value=36 Score=27.88 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=32.8
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC---CCCCCHHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLA 50 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K---~~~~~~~~Rl~Ml~la 50 (205)
||+.+++.|++.. |. .+|--|+.|.-=+|.. +..-+.+..+++|+.+
T Consensus 57 GHlsLi~~A~~~~--d~-vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~ 106 (314)
T 3inn_A 57 GHLELVRRARVEN--DV-TLVSIFVNPLQFGANEDLGRYPRDLERDAGLLHDA 106 (314)
T ss_dssp HHHHHHHHHHHHC--SE-EEEEECCCGGGSCTTSSTTTCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--CE-EEEEECCChhhcCCCccccccCCCHHHHHHHHHhC
Confidence 8999999999986 43 3444455665433333 2467889999998865
No 47
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=36.75 E-value=33 Score=27.65 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC---CCCCCHHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLA 50 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K---~~~~~~~~Rl~Ml~la 50 (205)
||+.+++.|++.. + ..+|--+..|.--.+.. +.+.+.++++++++.+
T Consensus 37 GH~~LI~~a~~~a--~-~vVvsffvnP~qf~~~ed~~~yprtle~d~~ll~~~ 86 (283)
T 3ag6_A 37 GHLTMVRESVSTN--D-ITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEV 86 (283)
T ss_dssp HHHHHHHHHHTTS--S-EEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--C-EEEEEEeCChhhcCCccccccCCCCHHHHHHHHHhC
Confidence 8999999999876 3 33333233443322222 2378899999999865
No 48
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0
Probab=36.04 E-value=23 Score=28.57 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHHhccCCeEEeccccCCCCCCCcC---CCCCCHHHHHHHHHHH
Q 028685 1 MHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLA 50 (205)
Q Consensus 1 gHl~ia~~a~~~~~ld~v~~vp~~~~P~~~~~~K---~~~~~~~~Rl~Ml~la 50 (205)
||+.+++.|++.. |. .++--+..|.--.|.. +...+.+.++++++.+
T Consensus 36 GH~sLi~~A~~~~--d~-vVvSifvnP~qf~~~ed~~~yprt~e~d~~ll~~~ 85 (283)
T 3uk2_A 36 GHLSLMRLARQHG--DP-VVASIFVNRLQFGPNEDFDKYPRTLQEDIEKLQKE 85 (283)
T ss_dssp HHHHHHHHHHTTC--SS-EEEEECCCGGGSCTTSCTTTSCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC--CE-EEEEEcCCHHHcCCcccccccCCCHHHHHHHHHHc
Confidence 8999999999986 43 3333344554323322 2478899999998864
No 49
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=34.35 E-value=13 Score=24.63 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=15.8
Q ss_pred CccChHHHHHHHHhCCCCCC
Q 028685 182 KYLTEDKVIDYIRESRLYLN 201 (205)
Q Consensus 182 ~~~vp~~V~~yI~~~~LY~~ 201 (205)
+.-|-..+++||++|+|...
T Consensus 29 r~evvk~lW~YIK~n~Lqdp 48 (93)
T 1v31_A 29 RPRIIAAIWHYVKARKLQNP 48 (93)
T ss_dssp SHHHHHHHHHHHHHTTCBCS
T ss_pred HHHHHHHHHHHHHHccCcCc
Confidence 34466789999999999854
No 50
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=29.80 E-value=20 Score=24.27 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=15.4
Q ss_pred ccChHHHHHHHHhCCCCCC
Q 028685 183 YLTEDKVIDYIRESRLYLN 201 (205)
Q Consensus 183 ~~vp~~V~~yI~~~~LY~~ 201 (205)
.-|-..+.+||++|+|.-.
T Consensus 38 ~eVvk~lW~YIK~nnLQdp 56 (101)
T 1v32_A 38 YDVSDTIAKYISKEGLLDP 56 (101)
T ss_dssp HHHHHHHHHHHHHHTCBCS
T ss_pred HHHHHHHHHHHHhhcCcCc
Confidence 3467789999999999854
No 51
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=29.18 E-value=33 Score=27.90 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=29.9
Q ss_pred CcHHHHHHHHH-HhccCCeEEeccccCCCCCCCcC---CCCCCHHHHHHHHHHH
Q 028685 1 MHLRMFELARD-TLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLA 50 (205)
Q Consensus 1 gHl~ia~~a~~-~~~ld~v~~vp~~~~P~~~~~~K---~~~~~~~~Rl~Ml~la 50 (205)
||+.+++.|++ .. + +.+|--+..|.--.+.. +.+.+.++++++++.+
T Consensus 47 GH~sLI~~A~~~~a--~-~vVvSffvnP~qF~~~ed~~~yprtle~d~~lL~~~ 97 (301)
T 3cov_A 47 GHLALVRAAKRVPG--S-VVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAE 97 (301)
T ss_dssp HHHHHHHHHHTSTT--E-EEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcC--C-EEEEEEcCChhhcCCccccccCCCCHHHHHHHHHhC
Confidence 89999999998 65 3 33332233443322222 2478889999998864
No 52
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=27.34 E-value=26 Score=23.18 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=14.6
Q ss_pred cChHHHHHHHHhCCCCCC
Q 028685 184 LTEDKVIDYIRESRLYLN 201 (205)
Q Consensus 184 ~vp~~V~~yI~~~~LY~~ 201 (205)
-|-..+++||++|+|...
T Consensus 31 evvk~lW~YIK~n~Lqdp 48 (93)
T 1uhr_A 31 VIIQALWQYIKTHKLQDP 48 (93)
T ss_dssp HHHHHHHHHHHHTTCBCS
T ss_pred HHHHHHHHHHHhccCCCc
Confidence 356788999999999854
No 53
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=25.37 E-value=40 Score=26.29 Aligned_cols=120 Identities=9% Similarity=0.084 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHcC-CCCeeeChhhhcCCCccchHHHHHHHHHHhhhhccccCCCceEEEEEccchhhcCCCCCCCChh
Q 028685 39 SAEHRINLCNLACKS-SDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPE 117 (205)
Q Consensus 39 ~~~~Rl~Ml~la~~~-~~~~~v~~~E~~~~~~syT~dtl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~~w~~W~~~ 117 (205)
+.++=.+|++.++++ .+.++|. ...+ -..+.++.+++.+| + .++|+.++.+.+ .|+
T Consensus 44 ~~~~a~~~a~al~~gGi~~iEvt-----~~t~-~a~e~I~~l~~~~~----------~--~~iGaGTVlt~~---~a~-- 100 (232)
T 4e38_A 44 NAEDIIPLGKVLAENGLPAAEIT-----FRSD-AAVEAIRLLRQAQP----------E--MLIGAGTILNGE---QAL-- 100 (232)
T ss_dssp SGGGHHHHHHHHHHTTCCEEEEE-----TTST-THHHHHHHHHHHCT----------T--CEEEEECCCSHH---HHH--
T ss_pred CHHHHHHHHHHHHHCCCCEEEEe-----CCCC-CHHHHHHHHHHhCC----------C--CEEeECCcCCHH---HHH--
Confidence 345567888888875 4444442 2222 35688899999886 2 477888877655 452
Q ss_pred hHHHHhhcccEEEEeCCCCChhhHhhhhhhhhhcCCcEEEEcCCCCCccchHHHHHHHHcCCCCCccChHHH---HHHHH
Q 028685 118 QVWTICRNFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKV---IDYIR 194 (205)
Q Consensus 118 ~~e~l~~~~~~iv~~R~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~~~~g~~i~~~vp~~V---~~yI~ 194 (205)
.-+-..++|+|.+ +.+.+ .+. ...+. ++.++.. -.+.|++.+++..|-++-.+.|.+. .+||+
T Consensus 101 --~Ai~AGA~fIvsP--~~~~~-vi~---~~~~~--gi~~ipG----v~TptEi~~A~~~Gad~vK~FPa~~~gG~~~lk 166 (232)
T 4e38_A 101 --AAKEAGATFVVSP--GFNPN-TVR---ACQEI--GIDIVPG----VNNPSTVEAALEMGLTTLKFFPAEASGGISMVK 166 (232)
T ss_dssp --HHHHHTCSEEECS--SCCHH-HHH---HHHHH--TCEEECE----ECSHHHHHHHHHTTCCEEEECSTTTTTHHHHHH
T ss_pred --HHHHcCCCEEEeC--CCCHH-HHH---HHHHc--CCCEEcC----CCCHHHHHHHHHcCCCEEEECcCccccCHHHHH
Confidence 2344578999864 43322 111 11111 3444431 2388999999999987666666433 36665
Q ss_pred h
Q 028685 195 E 195 (205)
Q Consensus 195 ~ 195 (205)
.
T Consensus 167 a 167 (232)
T 4e38_A 167 S 167 (232)
T ss_dssp H
T ss_pred H
Confidence 4
No 54
>3tvz_A Putative uncharacterized protein YHGC; putative monooxygenase, ABM family, ferredoxin fold, monooxy oxidoreductase; 2.00A {Bacillus subtilis subsp}
Probab=25.22 E-value=34 Score=25.20 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHhhhhccccCCCceEEEEEccchhhcCC
Q 028685 72 TLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFA 109 (205)
Q Consensus 72 T~dtl~~l~~~~~~~~~~~~~~~~~~fiiG~D~~~~l~ 109 (205)
|.+.|+.++++||+. ++.+.-+.|+..-|+
T Consensus 15 t~~~L~~i~~~~~~~--------~l~l~~~~~~~~l~~ 44 (172)
T 3tvz_A 15 TADFLKTIVKKHPSE--------NILLMQGQENAILIH 44 (172)
T ss_dssp CHHHHHHHHHHCTTS--------EEEEEEESSCEEEEE
T ss_pred CHHHHHHHHHHCCCC--------ceEEEEcCCceEEEE
Confidence 678999999999974 899999999876555
Done!