BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028686
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 208 bits (529), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 122/157 (77%), Gaps = 1/157 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGK+C+L R KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 18 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V +G
Sbjct: 78 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERG 136
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ LA +YGIKF ETSAK N+NVE FF++ARDIK ++
Sbjct: 137 EKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 207 bits (528), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 122/157 (77%), Gaps = 1/157 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGK+C+L R KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct: 16 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 75
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V +G
Sbjct: 76 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERG 134
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ LA +YGIKF ETSAK N+NVE FF++ARDIK ++
Sbjct: 135 EKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 120/172 (69%), Gaps = 3/172 (1%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLLLR KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 26 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 85
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+ +K+ V +
Sbjct: 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTA 144
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD--TDSRSEPSTIK 182
+ AD GI F ETSAK NVEQ F ++A +IK+R+ T +E S +K
Sbjct: 145 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVK 196
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/157 (57%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLLLR KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 16 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 75
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+ +K+ V +
Sbjct: 76 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTA 134
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ AD GI F ETSAK NVEQ F ++A +IK+R+
Sbjct: 135 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/157 (57%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLLLR KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 16 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 75
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+ +K+ V +
Sbjct: 76 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTA 134
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ AD GI F ETSAK NVEQ F ++A +IK+R+
Sbjct: 135 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/157 (57%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLLLR KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 9 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 68
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+ +K+ V +
Sbjct: 69 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTA 127
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ AD GI F ETSAK NVEQ F ++A +IK+R+
Sbjct: 128 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/158 (56%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLLLR KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 35 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 94
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+ +K+ V +
Sbjct: 95 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTA 153
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 170
+ AD GI F ETSAK NVEQ F ++A +IK+R+
Sbjct: 154 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 191
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 183 bits (465), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGK+CLLLR KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 26 GVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 85
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+ +K+ V +
Sbjct: 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTA 144
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ AD GI F ETSAK NVEQ F ++A +IK+R+
Sbjct: 145 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLLLR KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 19 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 78
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+ +K+ V +
Sbjct: 79 YRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTA 137
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ AD GI F ETSAK NVEQ F ++A +IK+R+
Sbjct: 138 KEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLLLR KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 19 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 78
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+ +K+ V +
Sbjct: 79 YRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTA 137
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ AD GI F ETSAK NVEQ F ++A +IK+R+
Sbjct: 138 KEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/157 (57%), Positives = 115/157 (73%), Gaps = 1/157 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLLLR KIRTI L+ K +KLQIWDTAGQERFRTIT++Y
Sbjct: 19 GVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSY 78
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA GI++VYDVTD SF+N++ WI+ I+++A +NVNK+LVGNK D+ SKR V + +G
Sbjct: 79 YRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDL-VSKRVVTSDEG 137
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ LAD +GIKF ETSAK NVEQ F ++A +IK+R+
Sbjct: 138 RELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/156 (57%), Positives = 112/156 (71%), Gaps = 1/156 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLLLR KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 43 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 102
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+ +K+ V +
Sbjct: 103 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTA 161
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
+ AD GI F ETSAK NVEQ F + A +IK+R
Sbjct: 162 KEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKR 197
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 113/157 (71%), Gaps = 1/157 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLLLR KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVG K D+ +K+ V +
Sbjct: 78 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDL-TTKKVVDYTTA 136
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ AD GI F ETSAK NVEQ F ++A +IK+R+
Sbjct: 137 KEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 173
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 177 bits (448), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 114/157 (72%), Gaps = 2/157 (1%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLL+R KI+T++++GK++KLQIWDTAGQERFRTITTAY
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 72
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGAMGI+LVYD+TDE +F NI+ W + + +HA+D +LVGNK+DM+ R V +G
Sbjct: 73 YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQG 130
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ALA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 131 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 177 bits (448), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 114/157 (72%), Gaps = 2/157 (1%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLL+R KI+T++++GK++KLQ+WDTAGQERFRTITTAY
Sbjct: 30 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 89
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGAMGI+LVYDVTDE +F NI+ W + + +HA+D +LVGNK+DM+ R V +G
Sbjct: 90 YRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQG 147
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ALA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 148 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 176 bits (447), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 114/157 (72%), Gaps = 2/157 (1%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLL+R KI+T++++GK++KLQ+WDTAGQERFRTITTAY
Sbjct: 17 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 76
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGAMGI+LVYDVTDE +F NI+ W + + +HA+D +LVGNK+DM+ R V +G
Sbjct: 77 YRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQG 134
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ALA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 135 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 171
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 171 bits (433), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 112/157 (71%), Gaps = 2/157 (1%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLL+R KI+T++++GK++KLQIWDTAGQERFRTITTAY
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 72
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA GI+LVYD+TDE +F NI+ W + + +HA+D +LVGNK+D + R V +G
Sbjct: 73 YRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXE--TRVVTADQG 130
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ALA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 131 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 112/157 (71%), Gaps = 2/157 (1%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLL+R KI+T++++GK++KLQ+WDTAGQERFRTITTAY
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 72
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA GI+LVYDVTDE +F NI+ W + + +HA+D +LVGNK+D + R V +G
Sbjct: 73 YRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXE--TRVVTADQG 130
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ALA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 131 EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLLLR KI+T+ELDGK +KLQIWDTAGQERFRTIT++Y
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 77
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRG+ GI++VYDVTD+ SFN ++ W++ I+++A+ V K+LVGNK D+ + KR V
Sbjct: 78 YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL-KDKRVVEYDVA 136
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 170
+ AD + F ETSA + NVE F ++AR IK+ ++
Sbjct: 137 KEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLLLR KI+T+ELDGK +KLQIWDTAGQERFRTIT++Y
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 77
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRG+ GI++VYDVTD+ SFN ++ W++ I+++A+ V K+LVGNK D+ + KR V
Sbjct: 78 YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL-KDKRVVEYDVA 136
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 170
+ AD + F ETSA + NVE F ++AR IK+ ++
Sbjct: 137 KEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 160 bits (406), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 105/155 (67%), Gaps = 1/155 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLLLR KI+T+ELDGK +KLQIWDTAGQERFRTIT++Y
Sbjct: 31 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 90
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRG+ GI++VYDVTD+ SFN ++ W++ I+++A+ V K+LVGNK D+ + KR V
Sbjct: 91 YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL-KDKRVVEYDVA 149
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
+ AD + F ETSA + NVE F ++AR IK+
Sbjct: 150 KEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 157 bits (397), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Query: 14 VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
VGK+ L R K++T+ KR+KLQIWDTAGQER+RTITTAYY
Sbjct: 34 VGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYY 93
Query: 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
RGAMG +L+YD+T+E SFN +++W I+ ++ DN +LVGNK DM+E +R VPT KGQ
Sbjct: 94 RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGQ 152
Query: 134 ALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 172
LA++ G FFE SAK N++V Q F + I +++D+
Sbjct: 153 LLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 191
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 153 bits (387), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLLL+ R + +DGK+IKLQIWDTAGQE FR+IT +Y
Sbjct: 31 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 90
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA G LLVYD+T +FN++ +W+ + QH+S N+ +L+GNK+D+ ES+R V +G
Sbjct: 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL-ESRRDVKREEG 149
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+A A E+G+ F ETSAKT NVE+ F + A++I +++
Sbjct: 150 EAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLLL+ R I +DGK+IKLQIWDTAGQE FR+IT +Y
Sbjct: 20 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSY 79
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA G LLVYD+T +FN++ W+ + QH++ N+ +L+GNK+D+ ES+R V +G
Sbjct: 80 YRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEG 138
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
+A A E+G+ F ETSAKT NVE+ F + A++I ++
Sbjct: 139 EAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 97/147 (65%), Gaps = 1/147 (0%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
VGK+ L R K++TI + KRIKLQIWDTAGQER+RTITTA
Sbjct: 14 SSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTA 73
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YYRGAMG +L+YD+T+E SFN +++W I+ ++ DN +LVGNK DM E +R V + +
Sbjct: 74 YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSER 132
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVF 158
G+ LAD G +FFE SAK N+NV+Q F
Sbjct: 133 GRQLADHLGFEFFEASAKDNINVKQTF 159
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 95/145 (65%), Gaps = 1/145 (0%)
Query: 14 VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
VGK+ L R K++T+ KRIKLQIWDTAGQER+RTITTAYY
Sbjct: 33 VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYY 92
Query: 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
RGAMG LL+YD+ ++ SF +++W I+ ++ DN +LVGNK D+ E +R VP G+
Sbjct: 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL-EDERVVPAEDGR 151
Query: 134 ALADEYGIKFFETSAKTNLNVEQVF 158
LAD+ G +FFE SAK N+NV+QVF
Sbjct: 152 RLADDLGFEFFEASAKENINVKQVF 176
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 147 bits (371), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 84/108 (77%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLLLR KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct: 8 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 67
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 120
YRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+
Sbjct: 68 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 146 bits (368), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 98/150 (65%), Gaps = 2/150 (1%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS LLLR KIRT+E++G+++KLQIWDTAGQERFRTIT+ Y
Sbjct: 19 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTY 78
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRG G+++VYDVT SF N++ W+ I Q+ D+V ++LVGNK D D ++ V T
Sbjct: 79 YRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKND-DPERKVVETEDA 136
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIA 162
A + GI+ FETSAK N+NVE++F I
Sbjct: 137 YKFAGQMGIQLFETSAKENVNVEEMFNCIT 166
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 106/175 (60%), Gaps = 1/175 (0%)
Query: 14 VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
VGK+ L R K++TI + KRIKLQIWDTAG ER+RTITTAYY
Sbjct: 19 VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYY 78
Query: 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
RGA G +L YD+T+E SFN +++W I+ ++ DN +LVGNK D E +R V + +G+
Sbjct: 79 RGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDX-EDERVVSSERGR 137
Query: 134 ALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQ 188
LAD G +FFE SAK N+NV+Q F + I ++ +++ ++P+ Q Q
Sbjct: 138 QLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTADPAVTGAKQGPQ 192
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXX-XXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GVGK+CLL+R + + +++DG ++KLQ+WDTAGQERFR++T A
Sbjct: 20 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHA 79
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YYR A +LL+YDVT+++SF+NI+ W+ I ++A +V +L+GNK D +R V
Sbjct: 80 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD-SAHERVVKRED 138
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
G+ LA EYG+ F ETSAKT LNV+ F +IA+++K+R
Sbjct: 139 GEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS LL R R+I++DGK IK QIWDTAGQER+R IT+AY
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 98
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA+G LLVYD+ ++ N+ W++ + HA N+ +LVGNK+D+ RAVPT +
Sbjct: 99 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEA 157
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+A A++ G+ F ETSA + NVE F +I +I
Sbjct: 158 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS LL R R+I++DGK IK QIWDTAGQER+R IT+AY
Sbjct: 30 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 89
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA+G LLVYD+ ++ N+ W++ + HA N+ +LVGNK+D+ RAVPT +
Sbjct: 90 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEA 148
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+A A++ G+ F ETSA + NVE F +I +I
Sbjct: 149 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 104/158 (65%), Gaps = 2/158 (1%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGK+ L+ R KI+T+EL GK+I+LQIWDTAGQERF +IT+AY
Sbjct: 36 GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 95
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YR A GI+LVYD+T + +F+++ W++ I+++AS++ +LVGNK D E+ R + +G
Sbjct: 96 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC-ETDREITRQQG 154
Query: 133 QALADEY-GIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ A + G++F E SAK N NV+++F + DI +++
Sbjct: 155 EKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 103/171 (60%), Gaps = 6/171 (3%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GVGKS LL R R+I++DGK IK QIWDTAGQER+R IT+A
Sbjct: 14 SGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSA 73
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YYRGA+G LLVYD+ ++ N+ W++ + HA N+ +LVGNK+D+ RAVPT +
Sbjct: 74 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDE 132
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI-----KQRLADTDSRSE 177
+A A++ + F ETSA + NVE+ F +I +I ++++AD + E
Sbjct: 133 ARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDE 183
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS LL R RT+E++GKRIK QIWDTAGQER+R IT+AY
Sbjct: 23 GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAY 82
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA+G L+VYD++ SS+ N +W+ + ++A DNV L+GNK+D+ RAVPT +
Sbjct: 83 YRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDL-AHLRAVPTEES 141
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 170
+ A E + F ETSA + NV++ F + I Q+++
Sbjct: 142 KTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVS 179
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 94/153 (61%), Gaps = 1/153 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS LL R R+I++DGK IK QIWDTAG ER+R IT+AY
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 98
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA+G LLVYD+ ++ N+ W++ + HA N+ +LVGNK+D+ RAVPT +
Sbjct: 99 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEA 157
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+A A++ G+ F ETSA + NVE F +I +I
Sbjct: 158 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 94/153 (61%), Gaps = 1/153 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS LL R R+I++DGK IK QIWDTAG ER+R IT+AY
Sbjct: 18 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 77
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA+G LLVYD+ ++ N+ W++ + HA N+ +LVGNK+D+ RAVPT +
Sbjct: 78 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEA 136
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+A A++ G+ F ETSA + NVE F +I +I
Sbjct: 137 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 100/161 (62%), Gaps = 2/161 (1%)
Query: 3 FLLRIYF-ERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 61
FL +I GVGK+CL+ R I+T+E++G+++KLQIWDTAG
Sbjct: 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 84
Query: 62 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 121
QERFR+IT +YYR A ++L YD+T E SF + W+R IEQ+AS+ V VLVGNK D+
Sbjct: 85 QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144
Query: 122 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162
E +R V + + ++ + + ETSAK + NVE++F +A
Sbjct: 145 E-RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 100/156 (64%), Gaps = 2/156 (1%)
Query: 14 VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
VGK+C++ R ++T+E+ GKR+KLQIWDTAGQERFRTIT +YY
Sbjct: 40 VGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYY 99
Query: 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
R A G +L YD+T SSF ++ +WI ++ ++A N+ ++L+GNK+D+ E R V ++ Q
Sbjct: 100 RSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE-LREVSLAEAQ 158
Query: 134 ALADEYGIKF-FETSAKTNLNVEQVFFSIARDIKQR 168
+LA+ Y I ETSAK + NVE+ F +A ++ R
Sbjct: 159 SLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS LL R R+I++DGK IK QIWDTAG ER+R IT+AY
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 74
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA+G LLVYD+ ++ N+ W++ + HA N+ LVGNK+D+ RAVPT +
Sbjct: 75 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL-RHLRAVPTDEA 133
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+A A++ G+ F ETSA + NVE F +I +I
Sbjct: 134 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS LL R R+I++DGK IK QIWDTAG ER+R IT+AY
Sbjct: 21 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 80
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA+G LLVYD+ ++ N+ W++ + HA N+ LVGNK+D+ RAVPT +
Sbjct: 81 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL-RHLRAVPTDEA 139
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+A A++ G+ F ETSA + NVE F +I +I
Sbjct: 140 RAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 94/155 (60%), Gaps = 1/155 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLL + R IE+ G++IKLQIWDTAGQERFR +T +Y
Sbjct: 25 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSY 84
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA G L+VYD+T S++N++ +W+ + + N +L+GNKAD+ E++R V +
Sbjct: 85 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL-EAQRDVTYEEA 143
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
+ A+E G+ F E SAKT NVE F A+ I Q
Sbjct: 144 KQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 96/162 (59%), Gaps = 5/162 (3%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
VGKS L+R +++T+ +DG+R LQ+WDTAGQERFR+I +
Sbjct: 37 AAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKS 96
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM-----DESKRA 126
Y+R A G+LL+YDVT E SF NIR W+ IE A + V +LVGNKAD+ E ++
Sbjct: 97 YFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKC 156
Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
VP G+ LA YG F ETSAK N+ + +AR++K+R
Sbjct: 157 VPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 94/157 (59%), Gaps = 1/157 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKSCLL + R IE+ G++IKLQIWDTAGQ RFR +T +Y
Sbjct: 40 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSY 99
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA G L+VYD+T S++N++ +W+ + + N +L+GNKAD+ E++R V +
Sbjct: 100 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL-EAQRDVTYEEA 158
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ A+E G+ F E SAKT NVE F A+ I Q +
Sbjct: 159 KQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 195
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 95/157 (60%), Gaps = 1/157 (0%)
Query: 11 RGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
VGKS L+LR +T+ LD +K +IWDTAGQER+ ++
Sbjct: 14 ESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAP 73
Query: 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
YYRGA ++VYD+T+E SF +NW++ +++ AS N+ L GNKAD+ +KRAV
Sbjct: 74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQ 132
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
+ Q+ AD+ + F ETSAKT++NV ++F +IA+ + +
Sbjct: 133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
Query: 11 RGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
VGKS L+LR +T+ LD +K +IWDTAGQER+ ++
Sbjct: 13 ESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAP 72
Query: 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
YYRGA ++VYD+T+ +F +NW++ +++ AS N+ L GNKAD+ SKRAV
Sbjct: 73 MYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL-ASKRAVEFQ 131
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+ QA AD+ + F ETSAKT +NV ++F +IA+ +
Sbjct: 132 EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 95/157 (60%), Gaps = 1/157 (0%)
Query: 11 RGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
VGKS L+LR +T+ LD +K +IWDTAGQER+ ++
Sbjct: 15 ESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAP 74
Query: 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
YYRGA ++VYD+T+E SF +NW++ +++ AS N+ L GNKAD+ +KRAV
Sbjct: 75 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQ 133
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
+ Q+ AD+ + F ETSAKT++NV ++F +IA+ + +
Sbjct: 134 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 14 VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
VGKS L+LR +T+ LD +K +IWDTAGQER+ ++ YY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
RGA ++VYD+T+E SF +NW++ +++ AS N+ L GNKAD+ +KRAV + Q
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQ 135
Query: 134 ALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
+ AD+ + F ETSAKT++NV ++F +IA+ + +
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 14 VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
VGKS L+LR +T+ LD +K +IWDTAGQER+ ++ YY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
RGA ++VYD+T+E SF +NW++ +++ AS N+ L GNKAD+ +KRAV + Q
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQ 135
Query: 134 ALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
+ AD+ + F ETSAKT++NV ++F +IA+ + +
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 14 VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
VGKS L+LR +T+ LD +K +IWDTAGQER+ ++ YY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
RGA ++VYD+T+E SF +NW++ +++ AS N+ L GNKAD+ +KRAV + Q
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQ 135
Query: 134 ALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
+ AD+ + F ETSAKT++NV ++F +IA+ + +
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
Query: 11 RGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
VGKS L+LR +T+ LD +K +IWDTAGQER+ ++
Sbjct: 11 ESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAP 70
Query: 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
YYRGA ++VYD+T+ +F +NW++ +++ AS N+ L GNKAD+ SKRAV
Sbjct: 71 MYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL-ASKRAVEFQ 129
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+ QA AD+ + F ETSAKT +NV ++F +IA+ +
Sbjct: 130 EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 14 VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
VGKS L+LR +T+ LD +K +IWDTAGQER+ ++ YY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
RGA ++VYD+T+E SF +NW++ +++ AS N+ L GNKAD+ +KRAV + Q
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQ 135
Query: 134 ALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
+ AD+ + F ETSAKT++NV ++F +IA+ + +
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 14 VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73
VGKS L+LR +T+ LD +K +IWDTAGQER+ ++ YY
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 133
RGA ++VYD+T+E SF +NW++ +++ AS N+ L GNKAD+ +KRAV + Q
Sbjct: 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQ 135
Query: 134 ALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
+ AD+ + F ETSAKT++NV ++F +IA+ + +
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 1/157 (0%)
Query: 11 RGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
VGKS L+LR +T+ LD +K +IWDTAGQER+ ++
Sbjct: 15 ESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAP 74
Query: 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
YYRGA ++VYD+T+E SF +NW++ +++ AS N+ L GNKAD+ +KRAV
Sbjct: 75 XYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQ 133
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
+ Q+ AD+ + F ETSAKT+ NV ++F +IA+ + +
Sbjct: 134 EAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 94/157 (59%), Gaps = 1/157 (0%)
Query: 11 RGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
VGKS L+LR +T+ LD +K +IWDTAG ER+ ++
Sbjct: 13 ESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAP 72
Query: 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
YYRGA ++VYD+T+E SF +NW++ +++ AS N+ L GNKAD+ +KRAV
Sbjct: 73 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQ 131
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
+ Q+ AD+ + F ETSAKT++NV ++F +IA+ + +
Sbjct: 132 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
Query: 49 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SD 107
G+RI LQ+WDTAG ERFR++TTA++R AMG LL++D+T+E SF N+RNWI ++ HA S+
Sbjct: 67 GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE 126
Query: 108 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
N + VL GNK+D+ E +RAV + + LA++YGI +FETSA N+ + I +
Sbjct: 127 NPDIVLCGNKSDL-EDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK 185
Query: 168 RL 169
R+
Sbjct: 186 RM 187
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Query: 11 RGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITT 70
VGKS L+LR +T+ LD +K +IWDTAG ER+ ++
Sbjct: 13 ESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAP 72
Query: 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
YYRGA ++VYD+T+ +F +NW++ +++ AS N+ L GNKAD+ SKRAV
Sbjct: 73 MYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL-ASKRAVEFQ 131
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+ QA AD+ + F ETSAKT +NV ++F +IA+ +
Sbjct: 132 EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 90/146 (61%), Gaps = 1/146 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS LL R RTIE++ K+IK QIWDTAG ER+R IT+AY
Sbjct: 20 GVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAY 79
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA+G L+VYD++ SS+ N +W+ + ++A DNV L+GNK+D+ RAVPT +
Sbjct: 80 YRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDL-AHLRAVPTDEA 138
Query: 133 QALADEYGIKFFETSAKTNLNVEQVF 158
+ A E + F ETSA + NV++ F
Sbjct: 139 KNFAMENQMLFTETSALNSDNVDKAF 164
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 88/158 (55%), Gaps = 1/158 (0%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GKSCLL + + I + GK +KLQIWDTAGQERFR++T +
Sbjct: 19 AGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRS 78
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YYRGA G LLVYD+T ++N + NW+ + AS N+ +L GNK D+D + R V +
Sbjct: 79 YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-ADREVTFLE 137
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
A E + F ETSA T NVE+ F AR I ++
Sbjct: 138 ASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 175
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 123 bits (308), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
G GKSCLL + R + + GK +KLQIWDTAGQERFR++T +Y
Sbjct: 35 GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSY 94
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA G LLVYD+T ++N++ W+ + AS N+ +L GNK D+D +R V +
Sbjct: 95 YRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD-PEREVTFLEA 153
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
A E + F ETSA T NVE+ F AR I ++
Sbjct: 154 SRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 100/153 (65%), Gaps = 3/153 (1%)
Query: 51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNV 109
++ LQ+WDTAG ERFR++TTA++R AMG LL++D+T + SF N+RNW+ ++ +A +N
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 110 NKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ VL+GNKAD+ + +R V + + LA++YGI +FETSA T NVE+ ++ I +R+
Sbjct: 129 DIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRM 187
Query: 170 ADTDSRSE-PSTIKINQPDQAGGVGQAAQKSAC 201
+++ P T+ + G A +K AC
Sbjct: 188 EKCVEKTQVPDTVNGGNSGKLDGEKPAEKKCAC 220
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 94/133 (70%), Gaps = 3/133 (2%)
Query: 51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNV 109
++ LQ+WDTAGQERFR++TTA++R AMG LL++D+T + SF N+RNW+ ++ +A +N
Sbjct: 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142
Query: 110 NKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ VL+GNKAD+ + +R V + + LAD+YGI +FETSA T NVE+ ++ I +R+
Sbjct: 143 DIVLIGNKADLPD-QREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 201
Query: 170 ADTDSRSE-PSTI 181
+++ P T+
Sbjct: 202 EQCVEKTQIPDTV 214
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 86/154 (55%), Gaps = 1/154 (0%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GKSCLL + + I + GK +KLQIWDTAGQERFR++T +
Sbjct: 20 AGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRS 79
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YYRGA G LLVYD+T ++N + NW+ + AS N+ +L GNK D+D + R V +
Sbjct: 80 YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-ADREVTFLE 138
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
A E + F ETSA T +VE+ F AR I
Sbjct: 139 ASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 119 bits (299), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 95/169 (56%), Gaps = 9/169 (5%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
VGKS L+LR +++ LD +K +IWDTAGQER+ ++ Y
Sbjct: 18 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMY 77
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA ++VYD+T++ +F + W++ +++ AS ++ L GNKAD+ +KR V +
Sbjct: 78 YRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADL-ANKRMVEYEEA 136
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTI 181
QA AD+ + F ETSAKT +NV +F +IA+ + +SEP +
Sbjct: 137 QAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL--------PKSEPQNL 177
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 94/160 (58%), Gaps = 6/160 (3%)
Query: 14 VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR-TITTAY 72
VGK+CL R + R +++DG+RIK+Q+WDTAGQERFR ++ Y
Sbjct: 31 VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHY 90
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSK 131
YR ++ VYD+T+ +SF+++ WI +QH ++++ ++LVGNK D+ S VPT
Sbjct: 91 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL-RSAIQVPTDL 149
Query: 132 GQALADEYGIKFFETSAKT---NLNVEQVFFSIARDIKQR 168
Q AD + + FETSAK N +VE +F ++A +K
Sbjct: 150 AQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGK+ LL R RT+ L +K QIWDTAG ER+R IT+AY
Sbjct: 35 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 94
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA+G LLV+D+T ++ + W++ + HA + +LVGNK+D+ ++ R VPT +
Sbjct: 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA-REVPTEEA 153
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 170
+ A+ G+ F ETSA + NVE F ++ ++I +++
Sbjct: 154 RMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 85/154 (55%), Gaps = 1/154 (0%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GKSCLL + + I + GK +KLQIWDTAG ERFR++T +
Sbjct: 17 AGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRS 76
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YYRGA G LLVYD+T ++N + NW+ + AS N+ +L GNK D+D + R V +
Sbjct: 77 YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-ADREVTFLE 135
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
A E + F ETSA T +VE+ F AR I
Sbjct: 136 ASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGK+ LL R RT+ L +K QIWDTAG ER+R IT+AY
Sbjct: 20 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 79
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA+G LLV+D+T ++ + W++ + HA + +LVGNK+D+ ++ R VPT +
Sbjct: 80 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA-REVPTEEA 138
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 170
+ A+ G+ F ETSA + NVE F ++ ++I +++
Sbjct: 139 RMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 176
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 89/156 (57%), Gaps = 3/156 (1%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS LLLR K++TI +DG + KL IWDTAGQERFRT+T +Y
Sbjct: 25 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 84
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN-VNKVLVGNKADMDESKRAVPTSK 131
YRGA G++LVYDVT +F + NW+ +E + + N + LVGNK +D+ R V ++
Sbjct: 85 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNK--IDKENREVDRNE 142
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167
G A ++ F E SAKT V+ F + I Q
Sbjct: 143 GLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ 178
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 117 bits (292), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 6/160 (3%)
Query: 14 VGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR-TITTAY 72
VGK+CL R + R +++DG+RIK+Q+WDTAGQERFR ++ Y
Sbjct: 40 VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHY 99
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSK 131
YR ++ VYD T+ +SF+++ WI +QH ++++ ++LVGNK D+ S VPT
Sbjct: 100 YRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL-RSAIQVPTDL 158
Query: 132 GQALADEYGIKFFETSAKT---NLNVEQVFFSIARDIKQR 168
Q AD + FETSAK N +VE +F ++A +K
Sbjct: 159 AQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLKSH 198
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 93/133 (69%), Gaps = 3/133 (2%)
Query: 51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNV 109
++ LQ+WDTAG ERFR++TTA++R AMG LL++D+T + SF N+RNW+ ++ +A +N
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 110 NKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ VL+GNKAD+ + +R V + + LA++YGI +FETSA T NVE+ ++ I +R+
Sbjct: 129 DIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRM 187
Query: 170 ADTDSRSE-PSTI 181
+++ P T+
Sbjct: 188 EKCVEKTQVPDTV 200
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 5/161 (3%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+ L+LR + + + GKR+ L IWDTAGQERF +
Sbjct: 29 GCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPI 88
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YYR + G +LVYD+TDE SF ++NW++ + + + + +VGNK D+ E +R V +
Sbjct: 89 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EKERHVSIQE 147
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 172
++ A+ G K + TSAK N +E++F D+ +R+ +T
Sbjct: 148 AESYAESVGAKHYHTSAKQNKGIEELFL----DLCKRMIET 184
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 5/161 (3%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+ L+LR + + + GKR+ L IWDTAGQERF +
Sbjct: 15 GCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPI 74
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YYR + G +LVYD+TDE SF ++NW++ + + + + +VGNK D+ E +R V +
Sbjct: 75 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EKERHVSIQE 133
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 172
++ A+ G K + TSAK N +E++F D+ +R+ +T
Sbjct: 134 AESYAESVGAKHYHTSAKQNKGIEELFL----DLCKRMIET 170
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
G GKS L+LR +T+ ++ +K +IWDTAGQER+ ++ Y
Sbjct: 22 GAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMY 81
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRGA ++V+DVT+++SF + W++ ++ + N+ L GNK+D+ ++++ V
Sbjct: 82 YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARK-VTAEDA 140
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIAR 163
Q A E G+ F ETSAKT NV+++F+ IAR
Sbjct: 141 QTYAQENGLFFMETSAKTATNVKEIFYEIAR 171
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 5/161 (3%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+ L+LR + + + GKR+ L IWDTAGQERF +
Sbjct: 15 GCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPI 74
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YYR + G +LVYD+TDE SF ++NW++ + + + + +VGNK D+ E +R V +
Sbjct: 75 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EKERHVSIQE 133
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 172
++ A+ G K + TSAK N +E++F D+ +R+ +T
Sbjct: 134 AESYAESVGAKHYHTSAKQNKGIEELFL----DLCKRMIET 170
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 89/155 (57%), Gaps = 2/155 (1%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIEL-DGKRIKLQIWDTAGQERFRTITT 70
GVGKS LL R ++I+L + K IK QIWDTAGQER+R IT+
Sbjct: 16 SGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITS 75
Query: 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
AYYRGA+G LLVYD+T ++SF NI W++ + +A N+ +LVGNK+D+ + R + +
Sbjct: 76 AYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDL-KHLRVINDN 134
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
A + + F ETSA NVE F + +I
Sbjct: 135 DATQYAKKEKLAFIETSALEATNVELAFHQLLNEI 169
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 84/156 (53%), Gaps = 2/156 (1%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
VGKS ++LR + + ++ +K +IWDTAGQERF ++
Sbjct: 12 AAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPX 71
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD--MDESKRAVPT 129
YYR A L+VYDVT SF R+W++ + + AS ++ LVGNK D + +R V
Sbjct: 72 YYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAR 131
Query: 130 SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+G+ LA+E G+ FFETSAKT NV VF I I
Sbjct: 132 EEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 87/142 (61%), Gaps = 9/142 (6%)
Query: 51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNV 109
++ LQ+WDTAG ERFR++TTA++R A G LL +D+T + SF N+RNW ++ +A +N
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 110 NKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169
+ VL+GNKAD+ + +R V + + LA++YGI +FETSA T NVE + ++ L
Sbjct: 129 DIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVE-------KSVETLL 180
Query: 170 ADTDSRSEPSTIKINQPDQAGG 191
R E K PD G
Sbjct: 181 DLIXKRXEKCVEKTQVPDTVNG 202
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 90/164 (54%), Gaps = 10/164 (6%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIK-LQIWDTAGQERFRTITTA 71
GVGK+ L+ R + + +DG ++ +Q+WDTAGQERF+++ A
Sbjct: 18 GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVA 77
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK------VLVGNKADMDESKR 125
+YRGA +LVYDVT+ SSF NI++W HA NVN V++GNK D +ESK+
Sbjct: 78 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA--NVNSPETFPFVILGNKIDAEESKK 135
Query: 126 AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQR 168
V Q LA G I F TSAK +NV+ F IAR Q+
Sbjct: 136 IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNV 109
++ LQ+WDTAG ERFR++TTA++R A G LL +D+T + SF N+RNW ++ +A +N
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 110 NKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 156
+ VL+GNKAD+ + +R V + + LA++YGI +FETSA T NVE+
Sbjct: 129 DIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEK 174
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS ++ R +T+ + K IWDTAGQERF ++ Y
Sbjct: 33 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY 92
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRG+ ++VYD+T + SF ++ W++ +++H +N+ + GNK D+ + R VP
Sbjct: 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI-REVPLKDA 151
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+ A+ G ETSAK +N+E++F I+R I
Sbjct: 152 KEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS ++ R +T++ + K IWDTAGQERFR + Y
Sbjct: 15 GVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMY 74
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRG+ ++VYD+T E +F+ ++NW+R + QH ++ + GNK D+ + R V
Sbjct: 75 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV-REVMERDA 133
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+ AD F ETSAK +N+ ++F I+R I
Sbjct: 134 KDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 1/153 (0%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS ++ R +T++ + K IWDTAG ERFR + Y
Sbjct: 16 GVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMY 75
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132
YRG+ ++VYD+T E +F+ ++NW+R + QH ++ + GNK D+ + R V
Sbjct: 76 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV-REVMERDA 134
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+ AD F ETSAK +N+ ++F I+R I
Sbjct: 135 KDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Query: 7 IYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR 66
++ VGK+ L+ R +T+ L+ + ++LQ+WDTAGQERFR
Sbjct: 18 VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 77
Query: 67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 126
++ +Y R + ++VYD+T+ +SF+ WI ++ +V +LVGNK D+ + KR
Sbjct: 78 SLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-KRQ 136
Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162
V T +G+ A E + F ETSAK NV+Q+F +A
Sbjct: 137 VSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 107/197 (54%), Gaps = 12/197 (6%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GVGK+ L+ + + + +D + + +QIWDTAGQERF+++ A
Sbjct: 17 SGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVA 76
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAV 127
+YRGA +LV+DVT ++F + +W AS +N V++GNK D + R V
Sbjct: 77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDFE--NRQV 134
Query: 128 PTSKGQALA-DEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE-PSTIKINQ 185
T + QA + I +FETSAK +NVEQ F +IAR+ ++ + + +E P IK+++
Sbjct: 135 ATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDK 194
Query: 186 PDQAGGVGQAAQKSACC 202
D+A +A+ +S C
Sbjct: 195 NDRA----KASAESCSC 207
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 108/197 (54%), Gaps = 12/197 (6%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GVGK+ L+ + + + +D + + +QIWDTAGQERF+++ A
Sbjct: 17 SGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVA 76
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAV 127
+YRGA +LV+DVT ++F + +W AS +N V++GNK D++ R V
Sbjct: 77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQV 134
Query: 128 PTSKGQALA-DEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE-PSTIKINQ 185
T + QA + I +FETSAK +NVEQ F +IAR+ ++ + + +E P IK+++
Sbjct: 135 ATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDK 194
Query: 186 PDQAGGVGQAAQKSACC 202
++A +A+ +S C
Sbjct: 195 NERA----KASAESCSC 207
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 2/183 (1%)
Query: 7 IYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR 66
++ VGK+ L+ R +T+ L+ + I+LQ+WDTAG ERFR
Sbjct: 17 VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR 76
Query: 67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 126
++ +Y R + ++VYD+T+ +SF WI ++ +V +LVGNK D+ + KR
Sbjct: 77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQ 135
Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTD-SRSEPSTIKINQ 185
V +G+ A E + F ETSAK NV+Q+F +A + + D SR + IK+ +
Sbjct: 136 VSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEK 195
Query: 186 PDQ 188
P +
Sbjct: 196 PQE 198
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 1/156 (0%)
Query: 7 IYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR 66
++ VGK+ L+ R +T+ L+ + I+LQ+WDTAGQERFR
Sbjct: 10 VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFR 69
Query: 67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 126
++ +Y R + ++VYD+T+ +SF WI ++ +V +LVGNK D+ + KR
Sbjct: 70 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQ 128
Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162
V +G+ A E + F ETSAK NV+Q+F +A
Sbjct: 129 VSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 107/197 (54%), Gaps = 12/197 (6%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GVGK+ L+ + + + +D + + +QIWDTAG ERF+++ A
Sbjct: 17 SGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVA 76
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAV 127
+YRGA +LV+DVT ++F + +W AS +N V++GNK D++ R V
Sbjct: 77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQV 134
Query: 128 PTSKGQALA-DEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE-PSTIKINQ 185
T + QA + I +FETSAK +NVEQ F +IAR+ ++ + + +E P IK+++
Sbjct: 135 ATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDK 194
Query: 186 PDQAGGVGQAAQKSACC 202
D+A +A+ +S C
Sbjct: 195 NDRA----KASAESCSC 207
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 7 IYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR 66
++ VGK+ L+ R +T+ L+ + ++LQ+WDTAGQERFR
Sbjct: 6 VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 65
Query: 67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 126
++ +Y R + ++VYD+T+ +SF WI ++ +V +LVGNK D+ + KR
Sbjct: 66 SLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQ 124
Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162
+ +G+ A E + F ETSAKT NV+Q+F +A
Sbjct: 125 ITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVA 160
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 83/159 (52%), Gaps = 7/159 (4%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GGVGKS L+ R + +E+DG + +QIWDTAGQERFR++ T
Sbjct: 20 GGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTP 79
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAV 127
+YRG+ LL + V D SF N+ NW + +A ++ V++GNK D+ E R V
Sbjct: 80 FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKE--RQV 137
Query: 128 PTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 165
T + QA + G +FETSAK + NV F R I
Sbjct: 138 STEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 7/197 (3%)
Query: 7 IYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR 66
++ VGK+ L+ R +T+ L+ + ++LQ+WDTAG ERFR
Sbjct: 20 VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFR 79
Query: 67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 126
++ +Y R + ++VYD+T+ +SF WI ++ +V +LVGNK D+ + KR
Sbjct: 80 SLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQ 138
Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTD-SRSEPSTIKINQ 185
V +G+ A E + F ETSAK NV+Q+F +A + + D SR + IK+ +
Sbjct: 139 VSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEK 198
Query: 186 PDQAGGVGQAAQKSACC 202
P + Q + C
Sbjct: 199 PQE-----QPVSEGGCL 210
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 91/160 (56%), Gaps = 6/160 (3%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GGVGKS L L+ + + + LDG+ +++ I DTAG E + I
Sbjct: 12 GGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIRDN 70
Query: 72 YYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP 128
Y+R G LLV+ +T+ SF R I ++ D + ++VGNK+D++E +R VP
Sbjct: 71 YFRSGEGFLLVFSITEHESFTATAEFREQILRVKAE-EDKIPLLVVGNKSDLEE-RRQVP 128
Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
+ ++ A+E+G+++ ETSAKT NV++VFF + R+I+ +
Sbjct: 129 VEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 91/160 (56%), Gaps = 6/160 (3%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GGVGKS L L+ + + + LDG+ +++ I DTAG E + I
Sbjct: 16 GGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIRDN 74
Query: 72 YYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP 128
Y+R G LLV+ +T+ SF R I ++ D + ++VGNK+D++E +R VP
Sbjct: 75 YFRSGEGFLLVFSITEHESFTATAEFREQILRVKAE-EDKIPLLVVGNKSDLEE-RRQVP 132
Query: 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
+ ++ A+E+G+++ ETSAKT NV++VFF + R+I+ +
Sbjct: 133 VEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 1/156 (0%)
Query: 7 IYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR 66
++ VGK+ L+ R +T+ L+ + ++LQ+WDTAGQERFR
Sbjct: 5 VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 64
Query: 67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 126
++ +Y R + ++VYD+T+ +SF WI ++ +V +LVGNK D+ + KR
Sbjct: 65 SLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQ 123
Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162
V +G+ A E + F ETSAK NV+Q+F +A
Sbjct: 124 VSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 159
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 83/159 (52%), Gaps = 7/159 (4%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GGVGKS L+ R + +E+DG + +QIWDTAGQERFR++ T
Sbjct: 18 GGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTP 77
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAV 127
+YRG+ LL + V D SF N+ NW + +A ++ V++GNK D+ S+R V
Sbjct: 78 FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI--SERQV 135
Query: 128 PTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 165
T + QA + G +FETSAK NV F R +
Sbjct: 136 STEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GGVGKS L+ R + +E+DG + +QIWDTAGQERFR++ T
Sbjct: 16 GGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTP 75
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAV 127
+YRG+ LL + V D SF N+ NW + +A ++ V++GNK D+ S+R V
Sbjct: 76 FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI--SERQV 133
Query: 128 PTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
T + QA + G +FETSAK NV F
Sbjct: 134 STEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 85/169 (50%), Gaps = 7/169 (4%)
Query: 2 LFLLRIYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 61
L L I GGVGKS L+ R R +E+DG+ + LQIWDTAG
Sbjct: 6 LLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAG 65
Query: 62 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNK 117
QERF+++ T +YRGA LL + V D SF N+ NW + +A ++ V++GNK
Sbjct: 66 QERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNK 125
Query: 118 ADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 165
D ++ R V T + Q E G + ETSAK + NV F R +
Sbjct: 126 VDKED--RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 2/177 (1%)
Query: 7 IYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFR 66
++ VGK+ L+ R +T+ L+ + ++LQ+WDTAG ERFR
Sbjct: 10 VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFR 69
Query: 67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 126
++ +Y R + ++VYD+T+ +SF WI ++ +V +LVGNK D+ + KR
Sbjct: 70 SLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQ 128
Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKI 183
V +G+ A E + F ETSAK NV+Q+F +A + + T RS I I
Sbjct: 129 VSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MESTQDRSREDMIDI 184
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GGVGKS L L+ + + + LDG+ +++ I DTAGQE + I
Sbjct: 13 GGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDN 71
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADMDESKRAVPTS 130
Y+R G L V+ +T+ SF ++ I + D NV +LVGNK+D+ E KR V
Sbjct: 72 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVE 130
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
+ + AD++ + + ETSAKT NV++VFF + R+I+ R
Sbjct: 131 EAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 7/158 (4%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GVGK+ L+ + + + +D + + +QIWDTAGQERF+++ A
Sbjct: 17 SGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVA 76
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAV 127
+YRGA +LV+DVT ++F + +W AS +N V++GNK D++ R V
Sbjct: 77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQV 134
Query: 128 PTSKGQALA-DEYGIKFFETSAKTNLNVEQVFFSIARD 164
T + QA + I +FETSAK +NVEQ F +IAR+
Sbjct: 135 ATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 172
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 81/149 (54%), Gaps = 13/149 (8%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQRLADTDSRSEPSTIKINQPDQAG 190
R+I+Q K+N PD++G
Sbjct: 160 VREIRQH----------KLRKLNPPDESG 178
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+T+ LD ++LQ+WDTAGQERFR++ +Y R + ++VYD+T+ SF N WI++I
Sbjct: 41 KTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDIL 100
Query: 103 QHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
+V LVGNK D+ + R V +G A EY F ETSAK N++ +F
Sbjct: 101 NERGKDVIIALVGNKTDLGDL-RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GGVGKS L L+ + + + LDG+ +++ I DTAGQE + I
Sbjct: 27 GGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDN 85
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADMDESKRAVPTS 130
Y+R G L V+ +T+ SF ++ I + D NV +LVGNK+D+ E KR V
Sbjct: 86 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVE 144
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
+ + A+++ + + ETSAKT NV++VFF + R+I+ R
Sbjct: 145 EAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GGVGKS L L+ + + + LDG+ +++ I DTAGQE + I
Sbjct: 15 GGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDN 73
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADMDESKRAVPTS 130
Y+R G L V+ +T+ SF ++ I + D NV +LVGNK+D+ E KR V
Sbjct: 74 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVE 132
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
+ + A+++ + + ETSAKT NV++VFF + R+I+ R
Sbjct: 133 EAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GGVGKS L L+ + + + LDG+ +++ I DTAGQE + I
Sbjct: 23 GGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDN 81
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADMDESKRAVPTS 130
Y+R G L V+ +T+ SF ++ I + D NV +LVGNK+D+ E KR V
Sbjct: 82 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVE 140
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
+ + A+++ + + ETSAKT NV++VFF + R+I+ R
Sbjct: 141 EAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS L ++ + + + +DG+ L I DTAGQE + + Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSK 131
R G L V+ + + SF +I + I++ SD+V VLVGNK D+ + R V + +
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQ 129
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
Q LA YGI + ETSAKT VE F+++ R+I+Q
Sbjct: 130 AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GGVGKS L L+ + + + LDG+ +++ I DTAG E + I
Sbjct: 15 GGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIRDN 73
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADMDESKRAVPTS 130
Y+R G L V+ +T+ SF ++ I + D NV +LVGNK+D+ E KR V
Sbjct: 74 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVE 132
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
+ + A+++ + + ETSAKT NV++VFF + R+I+ R
Sbjct: 133 EAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS L ++ + + + +DG+ L I DTAGQE + + Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSK 131
R G L V+ + + SF +I + I++ SD+V VLVGNK D+ + R V + +
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQ 129
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
Q LA YGI + ETSAKT VE F+++ R+I+Q
Sbjct: 130 AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS L ++ + + + +DG+ L I DTAGQE + + Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSK 131
R G L V+ + + SF +I + I++ SD+V VLVGNK D+ + R V + +
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQ 129
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
Q LA YGI + ETSAKT VE F+++ R+I+Q
Sbjct: 130 AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS L ++ + + + +DG+ L I DTAGQE + + Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQY 71
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSK 131
R G L V+ + + SF +I + I++ SD+V VLVGNK D+ + R V + +
Sbjct: 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AGRTVESRQ 129
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
Q LA YGI + ETSAKT VE F+++ R+I+Q
Sbjct: 130 AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 49 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 108
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 109 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 166
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 167 VREIRQH 173
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK+D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKSDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 48 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 107
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 108 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 165
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 166 VREIRQH 172
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 47 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 107 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 165 VREIRQH 171
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 47 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 107 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 165 VREIRQH 171
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK+D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKSDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGKS ++ R R I+++ + ++L +WDTAGQE F IT A
Sbjct: 14 GAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKA 73
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD-MDESKRAVPTS 130
YYRGA +LV+ TD SF I +W + D + LV NK D +D+S +
Sbjct: 74 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTALVQNKIDLLDDS--CIKNE 130
Query: 131 KGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
+ + LA ++F+ TS K +LNV +VF +A Q+
Sbjct: 131 EAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 4/157 (2%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS L ++ + + + +DG+ L I DTAGQE + + Y
Sbjct: 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQY 72
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSK 131
R G L V+ + + SF +I ++ I++ S++V VLVGNK+D+ R V T +
Sbjct: 73 MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL--PSRTVDTKQ 130
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
Q LA YGI F ETSAKT V+ F+++ R+I++
Sbjct: 131 AQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GVGKS L ++ + + + +DG+ L I DTAGQE + + Y
Sbjct: 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQY 72
Query: 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSK 131
R G L V+ + + SF +I ++ I++ S++V VLVGNK D+ R V T +
Sbjct: 73 MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL--PSRTVDTKQ 130
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
Q LA YGI F ETSAKT V+ F+++ R+I++
Sbjct: 131 AQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 60 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK 119
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ R V T + LA YGI F ETSAKT VE F+++
Sbjct: 120 RVKDSDDVPMVLVGNKCDL--PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177
Query: 162 ARDIKQ 167
R+I+Q
Sbjct: 178 VREIRQ 183
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGN+ D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNRCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DT GQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAG E + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DT GQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I ++ I+
Sbjct: 43 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ S++V VLVGNK+D+ R V T + Q LA YGI F ETSAKT V+ F+++
Sbjct: 103 RVKDSEDVPMVLVGNKSDL--PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160
Query: 162 ARDIKQR 168
R+I++
Sbjct: 161 VREIRKH 167
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I ++ I+
Sbjct: 43 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ S++V VLVGNK+D+ R V T + Q LA YGI F ETSAKT V+ F+++
Sbjct: 103 RVKDSEDVPMVLVGNKSDL--PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160
Query: 162 ARDIKQR 168
R+I++
Sbjct: 161 VREIRKH 167
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+ +Q
Sbjct: 160 VREFRQH 166
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAG+E + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAGQE + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 47 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HA 105
+DG +L I DTAGQE F + Y R G LLV+ + D SFN + I +
Sbjct: 52 VDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD 111
Query: 106 SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
D+ VLVGNKAD+ ES+R VP S+ A + + +FE SAK LNV++ F + R +
Sbjct: 112 RDDFPVVLVGNKADL-ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
Query: 166 KQ 167
++
Sbjct: 171 RK 172
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAG E + + Y R G L V+ + + SF +I + I+
Sbjct: 47 KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 107 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 165 VREIRQH 171
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GGVGKS L ++ + + +E+D ++ L+I DTAG E+F +
Sbjct: 12 GGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
Y + G LVY +T +S+FN++++ I + +D+V +LVGNK D+ E +R V
Sbjct: 71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL-EDERVVGKE 129
Query: 131 KGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDI 165
+GQ LA ++ F E+SAK+ +NV ++F+ + R I
Sbjct: 130 QGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTA QE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKXDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTA QE + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKXDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAG E + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAG E + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAG E + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAG E + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAG E + + Y R G L V+ + + SF +I + I+
Sbjct: 42 KQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ SD+V VLVGNK D+ + R V + + Q LA YGI + ETSAKT VE F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 162 ARDIKQR 168
R+I+Q
Sbjct: 160 VREIRQH 166
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ + +DG+ L I DTAG E + + Y R G L V+ + + SF +I ++ I+
Sbjct: 60 KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 119
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
+ S++V VLVGNK D+ R V T + Q LA YGI F ETSAKT V+ F+++
Sbjct: 120 RVKDSEDVPMVLVGNKCDL--PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 177
Query: 162 ARDIKQR 168
R+I++
Sbjct: 178 VREIRKH 184
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 47 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HA 105
+D + +L I DTAGQE F + Y R G LLV+ VTD SF I + R I +
Sbjct: 48 IDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKD 107
Query: 106 SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
D +L+GNKAD+D +R V +GQ LA + + + E SAK +NV+Q F + R I
Sbjct: 108 RDEFPMILIGNKADLD-HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
Query: 166 KQ 167
++
Sbjct: 167 RK 168
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ +E+D ++ L+I DTAG E+F + Y + G LVY +T +S+FN++++ I
Sbjct: 44 KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL 103
Query: 103 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFS 160
+ +D+V +LVGNK D+ E +R V +GQ LA ++ F E+SAK+ +NV ++F+
Sbjct: 104 RVKDTDDVPMILVGNKCDL-EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYD 162
Query: 161 IARDI 165
+ R I
Sbjct: 163 LVRQI 167
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GGVGKS L ++ + + +E+D ++ L+I DTAG E+F +
Sbjct: 12 GGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
Y + G LVY +T +S+FN++++ I + +++V +LVGNK D+ E +R V
Sbjct: 71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-EDERVVGKE 129
Query: 131 KGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDI 165
+GQ LA ++ F E+SAK+ +NV ++F+ + R I
Sbjct: 130 QGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GGVGKS L ++ + + +E+D ++ L+I DTAG E+F +
Sbjct: 12 GGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTS 130
Y + G LVY +T +S+FN++++ I + +++V +LVGNK D+ E +R V
Sbjct: 71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-EDERVVGKE 129
Query: 131 KGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDI 165
+GQ LA ++ F E+SAK+ +NV ++F+ + R I
Sbjct: 130 QGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 9 FERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTI 68
F R GVGKS L++R + + +D + + ++I DTAGQE TI
Sbjct: 34 FGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED--TI 90
Query: 69 T-TAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASDNVNKVLVGNKADMDESKR 125
+ R G +LVYD+TD SF + ++NI E NV +LVGNKAD+D S R
Sbjct: 91 QREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHS-R 148
Query: 126 AVPTSKGQALADEYGIKFFETSAKTNL-NVEQVFFSIARDIKQR 168
V T +G+ LA E F+E SA T N+ ++F+ + R++++R
Sbjct: 149 QVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 73/120 (60%), Gaps = 4/120 (3%)
Query: 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 111
IK IWDTAGQER+ +I YYRGA ++V+D+++ ++ + + W+ ++ S N
Sbjct: 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYII 150
Query: 112 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD 171
+LV NK +D++K V + Q A + + F +TSAKT N++ +F+ +A +I + + +
Sbjct: 151 ILVANK--IDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNIIN 208
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GG GK+ + R + IK +WDTAGQE+F +
Sbjct: 24 GGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 83
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ + K +K
Sbjct: 84 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 139
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+ +++++ SAK+N N E+ F +AR +
Sbjct: 140 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GG GK+ + R + IK +WDTAGQE+F +
Sbjct: 12 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 71
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ + K +K
Sbjct: 72 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 127
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+ +++++ SAK+N N E+ F +AR +
Sbjct: 128 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GG GK+ + R + IK +WDTAGQE+F +
Sbjct: 19 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDG 78
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ + K +K
Sbjct: 79 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 134
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+ +++++ SAK+N N E+ F +AR +
Sbjct: 135 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GG GK+ + R + IK +WDTAGQE+F +
Sbjct: 24 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 83
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ + K +K
Sbjct: 84 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 139
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+ +++++ SAK+N N E+ F +AR +
Sbjct: 140 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GG GK+ + R + IK +WDTAGQE+F +
Sbjct: 19 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 78
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ + K +K
Sbjct: 79 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 134
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+ +++++ SAK+N N E+ F +AR +
Sbjct: 135 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GG GK+ + R + IK +WDTAGQE+F +
Sbjct: 19 GGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 78
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ + K +K
Sbjct: 79 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 134
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+ +++++ SAK+N N E+ F +AR +
Sbjct: 135 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GG GK+ + R + IK +WDTAGQE+F +
Sbjct: 19 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 78
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ + K +K
Sbjct: 79 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 134
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+ +++++ SAK+N N E+ F +AR +
Sbjct: 135 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Query: 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 111
IK +WDTAGQE+F + YY A ++++DVT ++ N+ NW R++ + +N+
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPI 117
Query: 112 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
VL GNK D+ + K +K + +++++ SAK+N N E+ F +AR +
Sbjct: 118 VLCGNKVDIKDRKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GG GK+ + R + IK +WDTAGQE+F +
Sbjct: 19 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 78
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ + K +K
Sbjct: 79 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKVK---AK 134
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+ +++++ SAK+N N E+ F +AR +
Sbjct: 135 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 4/154 (2%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GG GK+ + R + IK +WDTAGQE+F +
Sbjct: 19 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 78
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YY A ++ +DVT ++ N+ NW R++ + +N+ VL GNK D+ + K +K
Sbjct: 79 YYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 134
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+ +++++ SAK+N N E+ F +AR +
Sbjct: 135 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GG GK+ + R + IK +WDTAGQE++ +
Sbjct: 19 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDG 78
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ + K +K
Sbjct: 79 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 134
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+ +++++ SAK+N N E+ F +AR +
Sbjct: 135 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 77/126 (61%), Gaps = 6/126 (4%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI---RNWIR 99
+ IE+D L+I DTAG E+F ++ Y + G +LVY + ++ SF +I R+ I
Sbjct: 42 KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII 101
Query: 100 NIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159
++++ + V +LVGNK D++ + +S+G+ALA+E+G F ETSAK+ V+++F
Sbjct: 102 RVKRY--EKVPVILVGNKVDLESEREVS-SSEGRALAEEWGCPFMETSAKSKTMVDELFA 158
Query: 160 SIARDI 165
I R +
Sbjct: 159 EIVRQM 164
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 4/154 (2%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GG GK+ + R + + IK +WDTAG E+F +
Sbjct: 21 GGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDG 80
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ E K +K
Sbjct: 81 YYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKERKV---KAK 136
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+ +++++ SAK+N N E+ F +AR +
Sbjct: 137 TITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 101
++ E+D + L + DTAGQE F + Y R G L+VY VTD++SF ++ + + I
Sbjct: 56 LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 115
Query: 102 EQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFF 159
+ ++ +LV NK D+ R V +G+ +A +Y I + ETSAK LNV++ F
Sbjct: 116 LRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174
Query: 160 SIARDIKQR 168
+ R I+Q+
Sbjct: 175 DLVRVIRQQ 183
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 111
IK +WDTAG E+F + YY A ++++DVT ++ N+ NW R++ + +N+
Sbjct: 54 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPI 112
Query: 112 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
VL GNK D+ E K +K + +++++ SAK+N N E+ F +AR +
Sbjct: 113 VLCGNKVDVKERKVK---AKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 163
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 111
IK +WDTAG E+F + YY A ++++DVT ++ N+ NW R++ + +N+
Sbjct: 53 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPI 111
Query: 112 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
VL GNK D+ E K +K + +++++ SAK+N N E+ F +AR +
Sbjct: 112 VLCGNKVDVKERKVK---AKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 162
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 101
++ E+D + L + DTAGQE F + Y R G L+VY VTD++SF ++ + + I
Sbjct: 56 LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 115
Query: 102 EQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFF 159
+ ++ +LV NK D+ R V +G+ +A +Y I + ETSAK LNV++ F
Sbjct: 116 LRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174
Query: 160 SIARDIKQR 168
+ R I+Q+
Sbjct: 175 DLVRVIRQQ 183
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 111
IK +WDTAG E+F + YY A ++++DVT ++ N+ NW R++ + +N+
Sbjct: 61 IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPI 119
Query: 112 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
VL GNK D+ + K +K + +++++ SAK+N N E+ F +AR +
Sbjct: 120 VLCGNKVDIKDRKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 4/154 (2%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GG GK+ + R + IK +WDTAG E+F +
Sbjct: 19 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDG 78
Query: 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131
YY A ++++DVT ++ N+ NW R++ + +N+ VL GNK D+ + K +K
Sbjct: 79 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV---KAK 134
Query: 132 GQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+ +++++ SAK+N N E+ F +AR +
Sbjct: 135 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 111
IK +WDTAG E+F + YY A ++++DVT ++ N+ NW R++ + +N+
Sbjct: 55 IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPI 113
Query: 112 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
VL GNK D+ + K +K + +++++ SAK+N N E+ F +AR +
Sbjct: 114 VLCGNKVDIKDRKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 101
++ E+D + L + DTAGQE F + Y R G L+VY VTD++SF ++ + + I
Sbjct: 51 LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 110
Query: 102 EQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFF 159
+ ++ +LV NK D+ R V +G+ +A +Y I + ETSAK LNV++ F
Sbjct: 111 LRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 169
Query: 160 SIARDIKQR 168
+ R I+Q+
Sbjct: 170 DLVRVIRQQ 178
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 15/165 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GK+CLL+ + +E+DG+R++L +WDTAGQE + +
Sbjct: 19 GACGKTCLLI-VNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRPL 77
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y + +L+ + + S N++ WI + H V +LVG K D+
Sbjct: 78 SYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVDLRNDPQTIEQL 136
Query: 121 -DESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQVFFSIAR 163
E ++ V + +GQ++AD+ G ++E SAKT V +VF + R
Sbjct: 137 RQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATR 181
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 46 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-H 104
E+D + L + DTAGQE F + Y R G L+VY VTD++SF ++ + + I +
Sbjct: 60 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 105 ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFFSIAR 163
++ +LV NK D+ R V +G+ +A +Y I + ETSAK LNV++ F + R
Sbjct: 120 DRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
Query: 164 DIKQR 168
I+Q+
Sbjct: 179 VIRQQ 183
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+C+L+ + +DG + L +WDTAGQE + +
Sbjct: 15 GAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPL 73
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESKR----- 125
YRGA LL + + ++S+ NI + W+ + +H + + VLVG K D+ + K+
Sbjct: 74 SYRGADVFLLAFSLISKASYENIHKKWLPEL-KHYAPGIPIVLVGTKLDLRDDKQFLKDH 132
Query: 126 ----AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
++ T++G+ L G +++ E S+KT NV+ VF
Sbjct: 133 PGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI- 101
+ + L L + DTAGQ+ + + ++ G G +LVY VT SF I + + +
Sbjct: 63 KIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLH 122
Query: 102 EQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161
E H V VLVGNKAD+ +R V +G+ LA+ +G F E+SA+ N + +F +
Sbjct: 123 EGHGKTRVPVVLVGNKADLS-PEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV 181
Query: 162 ARDI 165
++I
Sbjct: 182 IQEI 185
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+C+L+ + +DG + L +WDTAGQE + +
Sbjct: 15 GAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQEDYNRLRPL 73
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESKR----- 125
YRGA +L + + ++S+ N+ + WI + +H + V +LVG K D+ + K+
Sbjct: 74 SYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFFIDH 132
Query: 126 --AVP--TSKGQALADEYGIK-FFETSAKTNLNVEQVF 158
AVP T++G+ L G + E S+KT NV+ VF
Sbjct: 133 PGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
GG GK+ LL+ + +++ GK + L IWDTAGQ+ + +
Sbjct: 43 GGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDDYDRLRPL 101
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESKRAV--- 127
+Y A +LL +DVT +SF+NI N W + H V ++VG K D+ + K V
Sbjct: 102 FYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKDKSLVNKL 160
Query: 128 ------PTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
P + +GQ +A G + + E SA+ + NV VF
Sbjct: 161 RRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GK+CLL+ + IE+DGK+++L +WDTAGQE + +
Sbjct: 14 GACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 72
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
Y IL+ + + S NI W + +H NV +LVGNK D+ DE R
Sbjct: 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 131
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
V +G+ +A+ G + E SAKT V +VF
Sbjct: 132 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GK+CLL+ + IE+DGK+++L +WDTAGQE + +
Sbjct: 12 GACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
Y IL+ + + S NI W + +H NV +LVGNK D+ DE R
Sbjct: 71 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 129
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
V +G+ +A+ G + E SAKT V +VF
Sbjct: 130 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GK+CLL+ + IE+DGK+++L +WDTAGQE + +
Sbjct: 16 GACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 74
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
Y IL+ + + S NI W + +H NV +LVGNK D+ DE R
Sbjct: 75 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 133
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
V +G+ +A+ G + E SAKT V +VF
Sbjct: 134 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GK+CLL+ + IE+DGK+++L +WDTAGQE + +
Sbjct: 14 GACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 72
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
Y IL+ + + S NI W + +H NV +LVGNK D+ DE R
Sbjct: 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 131
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
V +G+ +A+ G + E SAKT V +VF
Sbjct: 132 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 76/170 (44%), Gaps = 15/170 (8%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GK+CLL+ + IE+DGK+++L +WDTAGQE + +
Sbjct: 34 GACGKTCLLI-VFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 92
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
Y IL+ + V S NI W+ + +H NV +LV NK D+ DE R
Sbjct: 93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEV-KHFCPNVPIILVANKKDLRSDEHVRTEL 151
Query: 126 ------AVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDIKQR 168
V T G+A+A + E SAKT V +VF + R Q+
Sbjct: 152 ARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GK+CLL+ + IE+DGK+++L +WDTAGQE + +
Sbjct: 15 GACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 73
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
Y IL+ + + S NI W + +H NV +LVGNK D+ DE R
Sbjct: 74 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 132
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
V +G+ +A+ G + E SAKT V +VF
Sbjct: 133 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GK+CLL+ + IE+DGK+++L +WDTAGQE + +
Sbjct: 18 GACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 76
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
Y IL+ + + S NI W + +H NV +LVGNK D+ DE R
Sbjct: 77 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 135
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
V +G+ +A+ G + E SAKT V +VF
Sbjct: 136 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GK+CLL+ + IE+DGK+++L +WDTAGQE + +
Sbjct: 12 GACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
Y IL+ + + S NI W + +H NV +LVGNK D+ DE R
Sbjct: 71 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 129
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
V +G+ +A+ G + E SAKT V +VF
Sbjct: 130 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GK+CLL+ + IE+DGK+++L +WDTAGQE + +
Sbjct: 16 GACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 74
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
Y IL+ + + S NI W + +H NV +LVGNK D+ DE R
Sbjct: 75 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 133
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
V +G+ +A+ G + E SAKT V +VF
Sbjct: 134 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GK+CLL+ + IE+DGK+++L +WDTAGQE + +
Sbjct: 17 GACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 75
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
Y IL+ + + S NI W + +H NV +LVGNK D+ DE R
Sbjct: 76 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 134
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
V +G+ +A+ G + E SAKT V +VF
Sbjct: 135 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GK+CLL+ + IE+DGK+++L +WDTAGQE + +
Sbjct: 14 GACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 72
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
Y IL+ + + S NI W + +H NV +LVGNK D+ DE R
Sbjct: 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 131
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
V +G+ +A+ G + E SAKT V +VF
Sbjct: 132 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GK+CLL+ + IE+DGK+++L +WDTAGQE + +
Sbjct: 14 GACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 72
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
Y IL+ + + S NI W + +H NV +LVGNK D+ DE R
Sbjct: 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 131
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
V +G+ +A+ G + E SAKT V +VF
Sbjct: 132 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GK+CLL+ + IE+DGK+++L +WDTAGQE + +
Sbjct: 16 GACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 74
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
Y IL+ + + S NI W + +H NV +LVGNK D+ DE R
Sbjct: 75 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 133
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
V +G+ +A+ G + E SAKT V +VF
Sbjct: 134 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GK+CLL+ I IE+DGK+++L +WDTAGQE + +
Sbjct: 14 GACGKTCLLI-VNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPL 72
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM---DESKRAV 127
Y IL+ + + S NI W + +H NV +LVGNK D+ + ++R +
Sbjct: 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRQDEHTRREL 131
Query: 128 PTSKGQALADEYG---------IKFFETSAKTNLNVEQVF 158
K + + E G + E SAKT V +VF
Sbjct: 132 AKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GK+CLL+ I IE+DGK+++L +WDTAGQE + +
Sbjct: 34 GACGKTCLLI-VFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPL 92
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM---DESKRAV 127
Y IL+ + + S NI W + +H NV +LVGNK D+ + ++R +
Sbjct: 93 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRQDEHTRREL 151
Query: 128 PTSKGQALADEYG---------IKFFETSAKTNLNVEQVF 158
K + + E G + E SAKT V +VF
Sbjct: 152 AKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + ++G + L +WDTAGQE + +
Sbjct: 17 GAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQEDYNRLRPL 75
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESKR----- 125
YRGA +L + + ++S+ N+ + WI + +H + V VLVG K D+ + K+
Sbjct: 76 SYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDLRDDKQFFIDH 134
Query: 126 --AVP--TSKGQALADEYGIK-FFETSAKTNLNVEQVFFSIARDIKQ 167
AVP T +G+ L G + E S+K+ NV+ VF + R + Q
Sbjct: 135 PGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GK+CLL+ I IE+DGK+++L +WDTAGQE + +
Sbjct: 34 GACGKTCLLI-VFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPL 92
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM---DESKRAV 127
Y IL+ + + S NI W + +H NV +LVGNK D+ + ++R +
Sbjct: 93 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFXPNVPIILVGNKKDLRQDEHTRREL 151
Query: 128 PTSKGQALADEYG---------IKFFETSAKTNLNVEQVF 158
K + + E G + E SAKT V +VF
Sbjct: 152 AKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 42 IRTIELDGK-RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW--- 97
+R I L G + LQIWD GQ + Y GA G+LLVYD+T+ SF N+ +W
Sbjct: 45 LRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTV 104
Query: 98 IRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 157
++ + + + LVGNK D+ E R + K E G SAKT +V
Sbjct: 105 VKKVSEESETQPLVALVGNKIDL-EHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163
Query: 158 FFSIARDI 165
F +A +I
Sbjct: 164 FQKVAAEI 171
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 15/159 (9%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GK+CLL+ + IE+DGK+++L +WDTAGQE + +
Sbjct: 16 ACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLS 74
Query: 73 YRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR---- 125
Y IL+ + + S NI W + +H NV +LVGNK D+ DE R
Sbjct: 75 YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRRELA 133
Query: 126 -----AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
V +G+ +A+ G + E SAKT V +VF
Sbjct: 134 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 11/156 (7%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+C+L+ + +DG+ + L +WDTAGQE + +
Sbjct: 18 GAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQEDYSRLRPL 76
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESK------ 124
YRGA +L + + ++S+ N+ + W+ + + A NV VLVG K D+ + K
Sbjct: 77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADH 135
Query: 125 -RAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
+ +++G+ L + G + E S+KT NV+ VF
Sbjct: 136 TNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G GK+CLL+ + IE+DGK+++L +WDTAG E + +
Sbjct: 17 GACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPL 75
Query: 72 YYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DESKR--- 125
Y IL+ + + S NI W + +H NV +LVGNK D+ DE R
Sbjct: 76 SYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTRREL 134
Query: 126 ------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
V +G+ +A+ G + E SAKT V +VF
Sbjct: 135 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 69/152 (45%), Gaps = 4/152 (2%)
Query: 9 FERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTI 68
F GGVGKS L+LR + + I D LQI DT G +F +
Sbjct: 9 FGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAM 67
Query: 69 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKVLVGNKADMDESKRA 126
+LVY +T S ++ I + D ++ +LVGNK D S R
Sbjct: 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS-RE 126
Query: 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
V +S+ +ALA + F ETSAK N NV+++F
Sbjct: 127 VQSSEAEALARTWKCAFMETSAKLNHNVKELF 158
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 71 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
K+ P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 71 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
K+ P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV--- 127
Y L+ + + +SF N+R W + H N +LVG K D+ + K +
Sbjct: 71 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 128 ------PTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV--- 127
Y L+ + + +SF N+R W + H N +LVG K D+ + K +
Sbjct: 71 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 128 ------PTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 31 GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 89
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 90 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 148
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
K+ P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 149 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV--- 127
Y L+ + + +SF N+R W + H N +LVG K D+ + K +
Sbjct: 71 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 128 ------PTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 39 GAVGKTCLLISYTTNALPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 97
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 156
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
K+ P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 157 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 71 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
K+ P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 22 GAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPL 80
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV--- 127
Y L+ + + +SF N+R W + H N +LVG K D+ + K +
Sbjct: 81 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 139
Query: 128 ------PTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 140 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 39 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPL 97
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 156
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
K+ P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 157 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 15/159 (9%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
GK+CLL+ + IE+DGK+++L +WDTAGQE +
Sbjct: 15 ACGKTCLLI-VFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRARPLS 73
Query: 73 YRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--DES------ 123
Y IL+ + + S NI W + +H NV +LVGNK D+ DE
Sbjct: 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRNDEHTARELA 132
Query: 124 ---KRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
+ V ++G+ +A+ G + E SAKT V +VF
Sbjct: 133 KMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 19 GAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPL 77
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV--- 127
Y L+ + + +SF N+R W + H N +LVG K D+ + K +
Sbjct: 78 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 136
Query: 128 ------PTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 137 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 71 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
K+ P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 71 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
K+ P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 14 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLRPL 72
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 131
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
K+ P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 132 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 16 GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 74
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 75 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 133
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
K+ P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 134 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIR 99
R+I +DG+ L ++D Q+ R + ++VY VTD+ SF + +R +R
Sbjct: 40 RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 99
Query: 100 NIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159
Q +D+V +LVGNK+D+ S R V +G+A A + KF ETSA + NV+ +F
Sbjct: 100 RARQ--TDDVPIILVGNKSDLVRS-REVSVDEGRACAVVFDCKFIETSAALHHNVQALFE 156
Query: 160 SIARDIKQR 168
+ R I+ R
Sbjct: 157 GVVRQIRLR 165
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIR 99
R+I +DG+ L ++D Q+ R + ++VY VTD+ SF + +R +R
Sbjct: 45 RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 104
Query: 100 NIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159
Q +D+V +LVGNK+D+ S R V +G+A A + KF ETSA + NV+ +F
Sbjct: 105 RARQ--TDDVPIILVGNKSDLVRS-REVSVDEGRACAVVFDCKFIETSAALHHNVQALFE 161
Query: 160 SIARDIKQR 168
+ R I+ R
Sbjct: 162 GVVRQIRLR 170
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIR 99
R+I +DG+ L ++D Q+ R + ++VY VTD+ SF + +R +R
Sbjct: 45 RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 104
Query: 100 NIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159
Q +D+V +LVGNK+D+ S R V +G+A A + KF ETSA + NV+ +F
Sbjct: 105 RARQ--TDDVPIILVGNKSDLVRS-REVSVDEGRACAVVFDCKFIETSAALHHNVQALFE 161
Query: 160 SIARDIKQR 168
+ R I+ R
Sbjct: 162 GVVRQIRLR 170
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 6/156 (3%)
Query: 49 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 108
G IK +WDTAGQE+ + YY GA G +L +DVT + N+ W++ + +
Sbjct: 58 GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE 117
Query: 109 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
V+ NK D+ ++ + L + ++FE SAKT N F +AR R
Sbjct: 118 APIVVCANKIDIKNRQKISKKLVMEVLKGK-NYEYFEISAKTAHNFGLPFLHLARIFTGR 176
Query: 169 ---LADTDSRSEPSTIK--INQPDQAGGVGQAAQKS 199
+ ++ EP+ + + P+++ + Q S
Sbjct: 177 PDLIFVSNVNLEPTEVNYDYHSPEESKYIDYMEQAS 212
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 44 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIE 102
+ +DG+ ++LQ+ DTAGQ+ F + Y LL + V SSF N+ W+ I
Sbjct: 60 VVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR 119
Query: 103 QHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEY-GIKFFETSAKT 150
H +LVG ++D+ E ++ VP + LA+E + E SA T
Sbjct: 120 CHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALT 178
Query: 151 NLNVEQVF 158
N+++VF
Sbjct: 179 QKNLKEVF 186
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAG E + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 71 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
K+ P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAG E + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 71 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 129
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
K+ P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 130 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + + +SF N+R W + H + +LVG K D+
Sbjct: 71 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLVGTKLDLRDDKDTIERL 129
Query: 121 -DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
D+ + +G A+A E G +K+ E SA T ++ VF
Sbjct: 130 RDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 13 GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 71
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + + +SF N+R W + H + +LVG K D+
Sbjct: 72 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLVGTKLDLRDDKDTIERL 130
Query: 121 -DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
D+ + +G A+A E G +K+ E SA T ++ VF
Sbjct: 131 RDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 13 GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 71
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + + +SF N+R W + H + +LVG K D+
Sbjct: 72 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLVGTKLDLRDDKDTIERL 130
Query: 121 -DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
D+ + +G A+A E G +K+ E SA T ++ VF
Sbjct: 131 RDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAG E + +
Sbjct: 15 GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLEDYDRLRPL 73
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV--- 127
Y L+ + + +SF N+R W + H N +LVG K D+ + K +
Sbjct: 74 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 132
Query: 128 ------PTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 133 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAG E + +
Sbjct: 39 GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLEDYDRLRPL 97
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
Y L+ + + +SF N+R W + H N +LVG K D+ +
Sbjct: 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 156
Query: 123 -SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
K+ P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 157 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ I D LQI DT G +F + +LV+ VT + S + + I
Sbjct: 47 QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIV 106
Query: 103 Q--HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
Q + +++ +LVGNK D E++R V T + QA+A E+ F ETSAK N NV+++F
Sbjct: 107 QIKGSVEDIPVMLVGNKCD--ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ I ++G+ LQ+ DTAGQ+ + Y G +LVY VT SF I+ I
Sbjct: 45 KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIH 100
Query: 103 QHASDNVNKV-----LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 157
D V KV LVGNK D+ +R + +G+ALA+ + F E+SAK N V
Sbjct: 101 GKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAESWNAAFLESSAKENQTAVDV 159
Query: 158 F 158
F
Sbjct: 160 F 160
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAG E + +
Sbjct: 164 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPL 222
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
Y L+ + + +SF+++R W + H N +LVG K D+ + K +
Sbjct: 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 281
Query: 131 K-----------GQALADEYG-IKFFETSAKTNLNVEQVF 158
K G A+A E G +K+ E SA T ++ VF
Sbjct: 282 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAG E + +
Sbjct: 164 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPL 222
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
Y L+ + + +SF+++R W + H N +LVG K D+ + K +
Sbjct: 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 281
Query: 131 K-----------GQALADEYG-IKFFETSAKTNLNVEQVF 158
K G A+A E G +K+ E SA T ++ VF
Sbjct: 282 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ I ++G+ LQ+ DTAGQ+ + Y G +LVY VT SF I+ I
Sbjct: 40 KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIH 95
Query: 103 QHASDNVNKV-----LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 157
D V KV LVGNK D+ +R + +G+ALA+ + F E+SAK N V
Sbjct: 96 GKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAESWNAAFLESSAKENQTAVDV 154
Query: 158 F 158
F
Sbjct: 155 F 155
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAG E + +
Sbjct: 164 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRLRPL 222
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130
Y L+ + + +SF+++R W + H N +LVG K D+ + K +
Sbjct: 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKL 281
Query: 131 K-----------GQALADEYG-IKFFETSAKTNLNVEQVF 158
K G A+A E G +K+ E SA T ++ VF
Sbjct: 282 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ I ++G+ LQ+ DTAGQ+ + Y G +LVY VT SF I+ I
Sbjct: 45 KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIH 100
Query: 103 QHASDNVNKV-----LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 157
D V KV LVGNK D+ +R + +G+ALA+ + F E+SAK N V
Sbjct: 101 GKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAESWNAAFLESSAKENQTAVDV 159
Query: 158 F 158
F
Sbjct: 160 F 160
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 102
+ I ++G+ LQ+ DTAGQ+ + Y G +LVY VT SF I+ I
Sbjct: 43 KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIH 98
Query: 103 QHASDNVNKV-----LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 157
D V KV LVGNK D+ +R + +G+ALA+ + F E+SAK N V
Sbjct: 99 GKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAESWNAAFLESSAKENQTAVDV 157
Query: 158 F 158
F
Sbjct: 158 F 158
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 15/170 (8%)
Query: 2 LFLLRIYFERGGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 61
L L + G VGK+CLL+ + ++ + GK+ L ++DTAG
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAG 75
Query: 62 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADM 120
QE + + Y L+ + V + +SF N++ W+ ++++A NV +L+G + D+
Sbjct: 76 QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDL 134
Query: 121 -----------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158
D ++ + +GQ LA E G + E SA T ++ VF
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 34/179 (18%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +DGK + L +WDTAGQE + +
Sbjct: 14 GAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPL 72
Query: 72 YYRGAMG-------------------ILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNK 111
Y +G L+ + + +SF N+R W + H N
Sbjct: 73 SYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPI 131
Query: 112 VLVGNKADMDESKRAV---------PTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 158
+LVG K D+ + K + P + +G A+A E G +K+ E SA T ++ VF
Sbjct: 132 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 190
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + +D K + L +WDTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE-------- 122
Y L+ + + +S+ N+R W + H + +LVG K D+ +
Sbjct: 71 SYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRDDKDTIEKL 129
Query: 123 -SKRAVPTS--KGQALADEY-GIKFFETSAKTNLNVEQVF 158
K+ P + +G ALA E +K+ E SA T ++ VF
Sbjct: 130 KEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 11/132 (8%)
Query: 43 RTIELDGKR---IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRN 96
RT+ +DG+ I L +W+ G+ + + + L+VY +TD +SF + +R
Sbjct: 47 RTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI 104
Query: 97 WIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 156
+R Q ++++ +LVGNK+D+ R V S+G+A A + KF ETSA NV++
Sbjct: 105 QLRRARQ--TEDIPIILVGNKSDLVRC-REVSVSEGRACAVVFDCKFIETSAAVQHNVKE 161
Query: 157 VFFSIARDIKQR 168
+F I R ++ R
Sbjct: 162 LFEGIVRQVRLR 173
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 11/132 (8%)
Query: 43 RTIELDGKR---IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRN 96
RT+ +DG+ I L +W+ G+ + + + L+VY +TD +SF + +R
Sbjct: 78 RTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI 135
Query: 97 WIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 156
+R Q ++++ +LVGNK+D+ R V S+G+A A + KF ETSA NV++
Sbjct: 136 QLRRARQ--TEDIPIILVGNKSDLVRC-REVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192
Query: 157 VFFSIARDIKQR 168
+F I R ++ R
Sbjct: 193 LFEGIVRQVRLR 204
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 11/132 (8%)
Query: 43 RTIELDGKR---IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRN 96
RT+ +DG+ I L +W+ G+ + + + L+VY +TD +SF + +R
Sbjct: 47 RTLMVDGESATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRI 104
Query: 97 WIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 156
+R Q ++++ +LVGNK+D+ R V S+G+A A + KF ETSA NV++
Sbjct: 105 QLRRARQ--TEDIPIILVGNKSDL-VRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKE 161
Query: 157 VFFSIARDIKQR 168
+F I R ++ R
Sbjct: 162 LFEGIVRQVRLR 173
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 11/132 (8%)
Query: 43 RTIELDGKR---IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRN 96
RT+ +DG+ I L +W+ G+ + + + L+VY +TD +SF + +R
Sbjct: 47 RTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI 104
Query: 97 WIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 156
+R Q ++++ +LVGNK+D+ R V S+G+A A + KF ETSA NV++
Sbjct: 105 QLRRARQ--TEDIPIILVGNKSDL-VRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKE 161
Query: 157 VFFSIARDIKQR 168
+F I R ++ R
Sbjct: 162 LFEGIVRQVRLR 173
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 15/159 (9%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
VGK+CLL+ + +D K + L +WDTAGQE + +
Sbjct: 19 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQEDYDRLRPLS 77
Query: 73 YRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV---- 127
Y L+ + + +S+ N+R W + H + +LVG K D+ + K +
Sbjct: 78 YPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRDDKDTIEKLK 136
Query: 128 -----PTS--KGQALADEY-GIKFFETSAKTNLNVEQVF 158
P + +G ALA E +K+ E SA T ++ VF
Sbjct: 137 EKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 15/159 (9%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
VGK+CLL+ + +D K + L +WDTAGQE + +
Sbjct: 20 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQEDYDRLRPLS 78
Query: 73 YRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV---- 127
Y L+ + + +S+ N+R W + H + +LVG K D+ + K +
Sbjct: 79 YPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRDDKDTIEKLK 137
Query: 128 -----PTS--KGQALADEY-GIKFFETSAKTNLNVEQVF 158
P + +G ALA E +K+ E SA T ++ VF
Sbjct: 138 EKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITT--AYYRGAMGILLVYDVTDESSFNN---IRNW 97
RT+ +DG+ L + DT E+ + + +G ++VY + D SF + +R
Sbjct: 43 RTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQ 102
Query: 98 IRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 157
+R H +D+V +LVGNKAD+ R V +G+A A + KF ETSA NV ++
Sbjct: 103 LRRT--HQADHVPIILVGNKADLARC-REVSVEEGRACAVVFDCKFIETSATLQHNVAEL 159
Query: 158 F 158
F
Sbjct: 160 F 160
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 5/150 (3%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLLL ++ + L +WDTAGQE + +
Sbjct: 32 GAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPL 90
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-DESKRAVPT 129
Y + +LL + V + +SF+NI W I +H D VLVG K D+ + V
Sbjct: 91 SYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDTAKTVLVGLKVDLRKDGSDDVTK 149
Query: 130 SKGQALADEYG-IKFFETSAKTNLNVEQVF 158
+G L + G + + E S+ + + +VF
Sbjct: 150 QEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 5/150 (3%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLLL ++ + L +WDTAGQE + +
Sbjct: 31 GAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPL 89
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-DESKRAVPT 129
Y + +LL + V + +SF+NI W I +H D VLVG K D+ + V
Sbjct: 90 SYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDTAKTVLVGLKVDLRKDGSDDVTK 148
Query: 130 SKGQALADEYG-IKFFETSAKTNLNVEQVF 158
+G L + G + + E S+ + + +VF
Sbjct: 149 QEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 13 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 71
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 72 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 130
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 131 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 14 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 72
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 73 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 131
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 132 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 22 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 80
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 81 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 139
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 140 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 15 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 73
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 74 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 132
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 133 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 15 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 73
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 74 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 132
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 133 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 19 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 77
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 78 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 136
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 137 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 14 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 72
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 73 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 131
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 132 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 16 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 74
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 75 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 133
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 134 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 19 GAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPL 77
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 78 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 136
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 137 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L + DTAGQE + +
Sbjct: 12 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 15/159 (9%)
Query: 13 GVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 72
VGK+CLL+ + T+ + G+ L ++DTAGQE + +
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLS 71
Query: 73 YRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM----------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 72 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKLA 130
Query: 121 -DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 131 KNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAG E + +
Sbjct: 16 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLEDYDRLRPL 74
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 75 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 133
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 134 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 15/160 (9%)
Query: 12 GGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTA 71
G VGK+CLL+ + T+ + G+ L ++DTAG E + +
Sbjct: 12 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLEDYDRLRPL 70
Query: 72 YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---------- 120
Y L+ + V SSF N++ W+ I H +LVG + D+
Sbjct: 71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKL 129
Query: 121 --DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158
++ K P + + D +K+ E SA T ++ VF
Sbjct: 130 AKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD---N 108
++L + DTAG + ++ + Y+ G +LV+DV+ SF + + W ++ D
Sbjct: 73 VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP 132
Query: 109 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA-KTNLNVEQVFFSIA 162
+ VLV NK D+ + V Q A + FF+ SA + + F SIA
Sbjct: 133 LRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
Query: 47 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS 106
+D + + L++ DTA + R Y A L+VY V SF++ +++ + HA
Sbjct: 64 VDHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAK 122
Query: 107 D---NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEQVFFSIA 162
+ ++ +L+GNK DM + R V ++G ALA +G FFE SA + +V+ VF
Sbjct: 123 ETQRSIPALLLGNKLDMAQY-RQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181
Query: 163 RDIKQ 167
R+ ++
Sbjct: 182 REARR 186
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 44 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIE 102
+ E+D +RI+L +WDT+G + + Y + +L+ +D++ + +++ + W I+
Sbjct: 68 SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 127
Query: 103 QHASDNVNKVLVGNKADMD---------ESKRAVPTS--KGQALADEYG-IKFFETSAKT 150
+ N +LVG K+D+ + R P S +G +A + G + E SA
Sbjct: 128 EFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 186
Query: 151 NLNVEQVFFSIA 162
+ N + F +A
Sbjct: 187 SENSVRDIFHVA 198
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 44 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIE 102
+ E+D +RI+L +WDT+G + + Y + +L+ +D++ + +++ + W I+
Sbjct: 63 SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 122
Query: 103 QHASDNVNKVLVGNKADMD---------ESKRAVPTS--KGQALADEYG-IKFFETSAKT 150
+ N +LVG K+D+ + R P S +G +A + G + E SA
Sbjct: 123 EFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 181
Query: 151 NLNVEQVFFSIA 162
+ N + F +A
Sbjct: 182 SENSVRDIFHVA 193
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 44 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIE 102
+ E+D +RI+L +WDT+G + + Y + +L+ +D++ + +++ + W I+
Sbjct: 47 SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 106
Query: 103 QHASDNVNKVLVGNKADMD---------ESKRAVPTS--KGQALADEYG-IKFFETSAKT 150
+ N +LVG K+D+ + R P S +G +A + G + E SA
Sbjct: 107 EFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 165
Query: 151 NLNVEQVFFSIA 162
+ N + F +A
Sbjct: 166 SENSVRDIFHVA 177
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 79 ILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD 137
L+V+ VTD SF+ + +R ++ +LVGNK+D+ S R V +G+ LA
Sbjct: 89 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS-REVSLEEGRHLAG 147
Query: 138 EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
K ETSA + N ++F R I+ R
Sbjct: 148 TLSCKHIETSAALHHNTRELFEGAVRQIRLR 178
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 79 ILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD 137
L+V+ VTD SF+ + +R ++ +LVGNK+D+ S R V +G+ LA
Sbjct: 79 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS-REVSLEEGRHLAG 137
Query: 138 EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
K ETSA + N ++F R I+ R
Sbjct: 138 TLSCKHIETSAALHHNTRELFEGAVRQIRLR 168
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 79 ILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD 137
L+V+ VTD SF+ + +R ++ +LVGNK+D+ S R V +G+ LA
Sbjct: 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS-REVSLEEGRHLAG 158
Query: 138 EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168
K ETSA + N ++F R I+ R
Sbjct: 159 TLSCKHIETSAALHHNTRELFEGAVRQIRLR 189
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDN 108
K I +WD GQ+R R++ YYR G++ V D D S R + R + + N
Sbjct: 59 KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRN 118
Query: 109 VNKVLVGNKADMDESKRAVPTSKGQAL 135
++ NK D+ E+ A ++ L
Sbjct: 119 AAWLVFANKQDLPEAMSAAEITEKLGL 145
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDN 108
K I +WD GQ+R R++ YYR G++ V D D S R + R + + N
Sbjct: 42 KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRN 101
Query: 109 VNKVLVGNKADMDESKRAVPTSKGQAL 135
++ NK D+ E+ A ++ L
Sbjct: 102 AAWLVFANKQDLPEAMSAAEITEKLGL 128
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDN 108
K I +WD GQ+R R++ YYR G++ V D D S R + R + + N
Sbjct: 59 KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRN 118
Query: 109 VNKVLVGNKADMDESKRAVPTSKGQAL 135
++ NK D+ E+ A ++ L
Sbjct: 119 AVWLVFANKQDLPEAMSAAEITEKLGL 145
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVN 110
+ ++IWD GQ RFR++ Y RG I+ + D D RN + N +++ +
Sbjct: 67 VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIP 126
Query: 111 KVLVGNKADM 120
+++GNK D+
Sbjct: 127 VLVLGNKRDL 136
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVN 110
+ +++WD GQ RFR++ Y RG I+ + D D+ +N + N +++ +
Sbjct: 67 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 126
Query: 111 KVLVGNKADM 120
+++GNK D+
Sbjct: 127 VLVLGNKRDL 136
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVN 110
+ +++WD GQ RFR++ Y RG I+ + D D+ +N + N +++ +
Sbjct: 76 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 135
Query: 111 KVLVGNKADM 120
+++GNK D+
Sbjct: 136 VLVLGNKRDL 145
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 107
K +K +WD GQ++ R + YY G G++ V D D + R + I ++ D
Sbjct: 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 423
Query: 108 NVNKVLVGNKADMDESKRA 126
+ ++ NK D+ ++ +
Sbjct: 424 AI-ILIFANKQDLPDAMKP 441
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 45 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQ 103
+E + +R++L +WDT+G + + Y + +LL +D++ + ++ ++ W I
Sbjct: 51 LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD 110
Query: 104 HASDNVNKVLVGNKADMD---------ESKRAVPTS--KGQALADEYGIK-FFETSAKTN 151
+ + +L+G K D+ ++ P S +G A+A + G + + E SA T+
Sbjct: 111 YCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS 169
Query: 152 LNVEQVFFSIAR 163
E+ SI R
Sbjct: 170 ---EKSIHSIFR 178
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 45 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQ 103
+E + +R++L +WDT+G + + Y + +LL +D++ + ++ ++ W I
Sbjct: 52 LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD 111
Query: 104 HASDNVNKVLVGNKADMD---------ESKRAVPTS--KGQALADEYGIK-FFETSAKTN 151
+ + +L+G K D+ ++ P S +G A+A + G + + E SA T+
Sbjct: 112 YCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS 170
Query: 152 LNVEQVFFSIAR 163
E+ SI R
Sbjct: 171 ---EKSIHSIFR 179
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 45 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQ 103
+E + +R++L +WDT+G + + Y + +LL +D++ + ++ ++ W I
Sbjct: 68 LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD 127
Query: 104 HASDNVNKVLVGNKADM-----------DESKRAVPTSKGQALADEYGIK-FFETSAKTN 151
+ + +L+G K D+ + + + +G A+A + G + + E SA T+
Sbjct: 128 YCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS 186
Query: 152 LNVEQVFFSIAR 163
E+ SI R
Sbjct: 187 ---EKSIHSIFR 195
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDN 108
K +K +WD GQ++ R + YY G G++ V D D + R + R I +
Sbjct: 42 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRD 101
Query: 109 VNKVLVGNKADMDESKRA 126
++ NK D+ ++ +
Sbjct: 102 AIILIFANKQDLPDAXKP 119
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVN 110
I +WD GQ+R R++ YY G++ V D D S R + R + + N
Sbjct: 61 ISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAA 120
Query: 111 KVLVGNKADMDESKRAVPTSKGQAL 135
++ NK D+ E+ A ++ L
Sbjct: 121 WLVFANKQDLPEAMSAAEITEKLGL 145
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 107
K +K +WD GQ++ R + YY G G++ V D D + R + I ++ D
Sbjct: 55 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 114
Query: 108 NVNKVLVGNKADMDESKRA 126
+ ++ NK D+ ++ +
Sbjct: 115 AI-ILIFANKQDLPDAMKP 132
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 107
K +K +WD GQ++ R + YY G G++ V D D + R + I ++ D
Sbjct: 54 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 113
Query: 108 NVNKVLVGNKADMDESKRA 126
+ ++ NK D+ ++ +
Sbjct: 114 AI-ILIFANKQDLPDAMKP 131
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 107
K +K +WD GQ++ R + YY G G++ V D D + R + I ++ D
Sbjct: 42 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
Query: 108 NVNKVLVGNKADMDESKRA 126
+ ++ NK D+ ++ +
Sbjct: 102 AI-ILIFANKQDLPDAMKP 119
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 107
K +K +WD GQ++ R + YY G G++ V D D + R + I ++ D
Sbjct: 42 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
Query: 108 NVNKVLVGNKADMDESKRA 126
+ ++ NK D+ ++ +
Sbjct: 102 AI-ILIFANKQDLPDAMKP 119
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 43 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW-IRNI 101
+ I +DG+ L I D G + + ++ V+ + DE SF + N+ +R
Sbjct: 58 KEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLC 112
Query: 102 EQHASDNVNKVLVGNKADMDES-KRAVPTSKGQALA-DEYGIKFFETSAKTNLNVEQVFF 159
+ V VLVG + + + R + S+ + L+ D ++ET A LNVE+VF
Sbjct: 113 SFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQ 172
Query: 160 SIARDI 165
+A+ +
Sbjct: 173 DVAQKV 178
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 107
K +K +WD G ++ R + YY G G++ V D D + R + I ++ D
Sbjct: 55 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 114
Query: 108 NVNKVLVGNKADMDESKRA 126
+ ++ NK D+ ++ +
Sbjct: 115 AI-ILIFANKQDLPDAMKP 132
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 107
K +K +WD G ++ R + YY G G++ V D D + R + I ++ D
Sbjct: 44 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 103
Query: 108 NVNKVLVGNKADMDESKRA 126
+ ++ NK D+ ++ +
Sbjct: 104 AI-ILIFANKQDLPDAMKP 121
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDN 108
K +K +WD G ++ R + YY G G++ V D D + R + R I +
Sbjct: 45 KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 104
Query: 109 VNKVLVGNKADMDESKRA 126
++ NK D+ ++ +
Sbjct: 105 AIILIFANKQDLPDAMKP 122
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRN 100
+ T+E K I +WD GQ++ R + Y++ G++ V D D N R +R
Sbjct: 201 VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 258
Query: 101 IEQHASDNVNKVLVGNKADMDESKRA 126
+ + + ++ NK D+ + A
Sbjct: 259 LAEDELRDAVLLVFANKQDLPNAMNA 284
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 54 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKV 112
L +WD AG+E F + + L VYD++ ++ + + W+ NI+ AS + +
Sbjct: 56 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVI 114
Query: 113 LVGNKADM-DESKRAVPTSK 131
LVG D+ DE +R SK
Sbjct: 115 LVGTHLDVSDEKQRKACXSK 134
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 101
+ T+E K I +WD GQ++ R + Y++ G++ V D D + ++ +
Sbjct: 65 VETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKM 122
Query: 102 EQHASDNVNKVLV-GNKADMDESKRAVPTSKGQALADEYGIKFFET 146
Q +LV NK DM A+P S+ L D+ G++ +
Sbjct: 123 LQEDELRDAVLLVFANKQDM---PNAMPVSE---LTDKLGLQHLRS 162
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRN 100
+ T+E K I +WD GQ++ R + Y++ G++ V D D N R +R
Sbjct: 53 VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 110
Query: 101 IEQHASDNVNKVLVGNKADMDESKRA 126
+ + + ++ NK D+ + A
Sbjct: 111 LAEDELRDAVLLVFANKQDLPNAMNA 136
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRN 100
+ T+E K I +WD GQ++ R + Y++ G++ V D D N R +R
Sbjct: 52 VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 109
Query: 101 IEQHASDNVNKVLVGNKADMDESKRA 126
+ + + ++ NK D+ + A
Sbjct: 110 LAEDELRDAVLLVFANKQDLPNAMNA 135
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRN 100
+ T+E K I +WD GQ++ R + YY+ I+ V D D R ++
Sbjct: 53 VETVEY--KNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKM 110
Query: 101 IEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFF-ETSAKTN 151
+ + N ++ NK D+ ++ ++ L K++ +TS TN
Sbjct: 111 LNEDEMRNAILLVFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATN 162
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 7/124 (5%)
Query: 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDN 108
K +K Q+WD GQ R YY ++ V D D ++ + +E+
Sbjct: 44 KNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRK 103
Query: 109 VNKVLVGNKADMDESKRAVPTSKGQALA----DEYGIKFFETSAKTNLNVEQVFFSIARD 164
V+ NK DM+++ P+ AL + + F+TSA +++ +
Sbjct: 104 AILVVFANKQDMEQA--MTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVET 161
Query: 165 IKQR 168
+K R
Sbjct: 162 LKSR 165
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 54 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKV 112
L +WD AG+E F + + L VYD++ ++ + + W+ NI+ AS + +
Sbjct: 58 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVI 116
Query: 113 LVGNKADM-DESKRAVPTSK 131
LVG D+ DE +R SK
Sbjct: 117 LVGTHLDVSDEKQRKACXSK 136
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRN 100
+ T+E K I +WD GQ++ R + Y++ G++ V D D N R +R
Sbjct: 36 VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 93
Query: 101 IEQHASDNVNKVLVGNKADMDESKRA 126
+ + + ++ NK D+ + A
Sbjct: 94 LAEDELRDAVLLVFANKQDLPNAMNA 119
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RN 100
+ T+E + I +WD GQ++ R + YY G++ V D D ++ R + R
Sbjct: 53 VETVEF--RNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRM 110
Query: 101 IEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL 135
I + + ++ NK D+ + A ++ L
Sbjct: 111 INEEELKDAIILVFANKQDLPNAMSAAEVTEKLHL 145
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 76 AMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKVLVGNKADMD-ESKRAVPTSK 131
A ++ V+ + DE+SF + + + ++ + LVG + + S R V ++
Sbjct: 73 ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR 132
Query: 132 GQAL-ADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+AL AD ++ET A LNV++VF +A+ +
Sbjct: 133 ARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 167
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 76 AMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKVLVGNKADMD-ESKRAVPTSK 131
A ++ V+ + DE+SF + + + ++ + LVG + + S R V ++
Sbjct: 73 ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR 132
Query: 132 GQAL-ADEYGIKFFETSAKTNLNVEQVFFSIARDI 165
+AL AD ++ET A LNV++VF +A+ +
Sbjct: 133 ARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 18/86 (20%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 101
+ T+E K I +WD GQ+R R + Y++ G++ V D D
Sbjct: 53 VETVEY--KNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERI---------- 100
Query: 102 EQHASDNVNKVLVGNKADMDESKRAV 127
Q +D + K+L+ +DE + AV
Sbjct: 101 -QEVADELQKMLL-----VDELRDAV 120
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Query: 46 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA 105
E+ K +WD GQE R+ YY I+LV D D + + + H
Sbjct: 54 EIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHE 113
Query: 106 SDNVNKVLV-GNKADMDESKRAVPTSKGQALA 136
VL+ NK DM A SK L+
Sbjct: 114 DLRKAAVLIFANKQDMKGCMTAAEISKYLTLS 145
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 101
+ T+E K I +WD GQ++ R + Y++ G++ V D D R+ + +
Sbjct: 56 VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 113
Query: 102 --EQHASDNVNKVLVGNKADMDESKRA 126
E D V V NK D+ + A
Sbjct: 114 LNEDELRDAVLLVF-ANKQDLPNAMNA 139
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRN 100
+ T+E K I +WD G ++ R + Y++ G++ V D D N R +R
Sbjct: 38 VETVEY--KNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 95
Query: 101 IEQHASDNVNKVLVGNKADMDESKRA 126
+ + + ++ NK D+ + A
Sbjct: 96 LAEDELRDAVLLVFANKQDLPNAMNA 121
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD 87
I+T+E G KL IWD GQ+ R+ Y+ G++ V D D
Sbjct: 54 IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 97
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 47 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE 88
L K +KL +WD GQ R YY ++ V D TD+
Sbjct: 57 LSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDK 98
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD 87
I+T+E G KL IWD GQ+ R+ Y+ G++ V D D
Sbjct: 54 IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 97
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD 87
I+T+E G KL IWD GQ+ R+ Y+ G++ V D D
Sbjct: 52 IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 95
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD 87
I+T+E G KL IWD GQ+ R+ Y+ G++ V D D
Sbjct: 54 IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 97
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 53 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV 112
+ +WD GQE R+ YY +++V D TD + R + + H +
Sbjct: 66 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 125
Query: 113 LV-GNKADMDESKRAVPTSK 131
L+ NK D+ E S+
Sbjct: 126 LIFANKQDVKECMTVAEISQ 145
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 53 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV 112
+ +WD GQE R+ YY +++V D TD + R + + H +
Sbjct: 67 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 126
Query: 113 LV-GNKADMDESKRAVPTSK 131
L+ NK D+ E S+
Sbjct: 127 LIFANKQDVKECMTVAEISQ 146
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Query: 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDN 108
K +K Q+WD G R YY ++ V D D ++ + +E+
Sbjct: 46 KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRK 105
Query: 109 VNKVLVGNKADMDESKRA--VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 166
V+ NK DM+++ + + S G + + F+TSA +++ + +K
Sbjct: 106 AILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 165
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 53 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV 112
+ +WD GQE R+ YY +++V D TD + R + + H +
Sbjct: 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120
Query: 113 LV-GNKADMDESKRAVPTSK 131
L+ NK D+ E S+
Sbjct: 121 LIFANKQDVKECMTVAEISQ 140
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 53 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV 112
+ +WD GQE R+ YY +++V D TD + R + + H +
Sbjct: 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120
Query: 113 LV-GNKADMDESKRAVPTSK 131
L+ NK D+ E S+
Sbjct: 121 LIFANKQDVKECMTVAEISQ 140
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 10/121 (8%)
Query: 48 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD 107
DG+ +L DT G F + G LLV D + N +E
Sbjct: 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM---- 122
Query: 108 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET---SAKTNLNVEQVFFSIARD 164
++ V V NK D+ A P + + D GI + SAKT + V+ V + RD
Sbjct: 123 DLEVVPVLNKIDL---PAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRD 179
Query: 165 I 165
I
Sbjct: 180 I 180
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 10/121 (8%)
Query: 48 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD 107
DG+ +L DT G F + G LLV D + N +E
Sbjct: 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM---- 122
Query: 108 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET---SAKTNLNVEQVFFSIARD 164
++ V V NK D+ A P + + D GI + SAKT + V+ V + RD
Sbjct: 123 DLEVVPVLNKIDL---PAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRD 179
Query: 165 I 165
I
Sbjct: 180 I 180
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 46 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIE 102
E+ G + + ++ GQ + RG GI+ V D ++ ++RN N+
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA 127
Query: 103 QHA--SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFF 159
++ D+V V+ NK D+ + A+P +A+ D G E A V +
Sbjct: 128 EYGLTLDDVPIVIQVNKRDLPD---ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLK 184
Query: 160 SIARDIKQRLA 170
++R + R+A
Sbjct: 185 EVSRLVLARVA 195
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 111
+ ++D +GQ R+R + YY+ I+ V D +D + + + H +
Sbjct: 67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRR 126
Query: 112 VLV---GNKADMDESKRAVPTSK 131
+ + NK D+ ++ +V S+
Sbjct: 127 IPILFFANKMDLRDAVTSVKVSQ 149
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 27/54 (50%)
Query: 51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH 104
R+ ++D G ++FR + YY ++ V D +D +++ I+ + +H
Sbjct: 62 RVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKH 115
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 91
I++++ G KL +WD GQ + R +Y+ ++ V D D F
Sbjct: 53 IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 100
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 91
I++++ G KL +WD GQ + R +Y+ ++ V D D F
Sbjct: 52 IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 99
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 46 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIE 102
E+ G + + ++ GQ + RG GI+ V D ++ + RN N+
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESXRNXRENLA 127
Query: 103 QHA--SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFF 159
++ D+V V+ NK D+ + A+P +A+ D G E A V +
Sbjct: 128 EYGLTLDDVPIVIQVNKRDLPD---ALPVEXVRAVVDPEGKFPVLEAVATEGKGVFETLK 184
Query: 160 SIARDIKQRLA 170
++R + R+A
Sbjct: 185 EVSRLVLARVA 195
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 91
I++++ G KL +WD GQ + R +Y+ ++ V D D F
Sbjct: 40 IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 87
>pdb|4AXG|C Chain C, Structure Of Eif4e-Cup Complex
pdb|4AXG|D Chain D, Structure Of Eif4e-Cup Complex
Length = 130
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 45 IELDGKRIKLQIWDTAGQERFRTITT 70
IEL+G+ ++ IW T+ RFRT +T
Sbjct: 67 IELEGRLRRMNIWRTSDGTRFRTRST 92
>pdb|3D1C|A Chain A, Crystal Structure Of Flavin-Containing Putative
Monooxygenase (Np_373108.1) From Staphylococcus Aureus
Mu50 At 2.40 A Resolution
Length = 369
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD 171
Q +A+ Y + FE + TN++ + +++IA + AD
Sbjct: 95 QVVANHYELNIFENTVVTNISADDAYYTIATTTETYHAD 133
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD 87
K +K Q+WD G R YY ++ V D D
Sbjct: 49 KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCD 86
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD 87
K I ++WD GQ R Y+ ++ V D TD
Sbjct: 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTD 101
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 57 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVG 115
+D G E+ R + Y GI+ + D D S + + + + NV +++G
Sbjct: 84 FDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILG 143
Query: 116 NKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 157
NK D + A+ K + + YG +T+ K N+ ++++
Sbjct: 144 NKIDRTD---AISEEKLREIFGLYG----QTTGKGNVTLKEL 178
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 42 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF 91
I++++ G KL +WD G + R +Y+ ++ V D D F
Sbjct: 40 IKSVQSQG--FKLNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRF 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,039,088
Number of Sequences: 62578
Number of extensions: 170555
Number of successful extensions: 1249
Number of sequences better than 100.0: 354
Number of HSP's better than 100.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 354
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)